Psyllid ID: psy7542
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 762 | 2.2.26 [Sep-21-2011] | |||||||
| A1ZAI5 | 625 | Putative fatty acyl-CoA r | no | N/A | 0.576 | 0.702 | 0.347 | 2e-82 | |
| Q7ZXF5 | 515 | Fatty acyl-CoA reductase | N/A | N/A | 0.581 | 0.860 | 0.365 | 9e-78 | |
| Q922J9 | 515 | Fatty acyl-CoA reductase | yes | N/A | 0.582 | 0.862 | 0.361 | 5e-77 | |
| Q5R834 | 515 | Fatty acyl-CoA reductase | yes | N/A | 0.582 | 0.862 | 0.357 | 5e-76 | |
| Q8WVX9 | 515 | Fatty acyl-CoA reductase | yes | N/A | 0.582 | 0.862 | 0.357 | 5e-76 | |
| Q5ZM72 | 515 | Fatty acyl-CoA reductase | yes | N/A | 0.580 | 0.858 | 0.362 | 6e-76 | |
| Q66H50 | 515 | Fatty acyl-CoA reductase | yes | N/A | 0.581 | 0.860 | 0.350 | 8e-76 | |
| Q960W6 | 516 | Putative fatty acyl-CoA r | no | N/A | 0.566 | 0.837 | 0.341 | 2e-73 | |
| Q7TNT2 | 515 | Fatty acyl-CoA reductase | no | N/A | 0.583 | 0.864 | 0.321 | 1e-66 | |
| Q0P5J1 | 515 | Fatty acyl-CoA reductase | no | N/A | 0.590 | 0.873 | 0.317 | 3e-65 |
| >sp|A1ZAI5|FACR1_DROME Putative fatty acyl-CoA reductase CG5065 OS=Drosophila melanogaster GN=CG5065 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 307 bits (786), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 167/481 (34%), Positives = 275/481 (57%), Gaps = 42/481 (8%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVK-IYILLRPKKNKNSRERLEEIFQSPLYEALKK 120
+++FITG +GF+GKVL+EK+LR+C ++ IY+L+RPK+ + RL E+ +PL+E+L++
Sbjct: 126 RSVFITGGTGFMGKVLVEKLLRSCPEIRNIYLLIRPKRGQEVSARLTELLNAPLFESLRQ 185
Query: 121 EQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLN 180
E+ + KVIPI+GD+ +LGIS +D+ +L + +V+H AATV+FD+ ++ V +N
Sbjct: 186 EKPKE--LSKVIPISGDITSEELGISEKDQNLLCRNVSVVFHSAATVKFDEKLKLSVTIN 243
Query: 181 TRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNE 240
GT+ ++ L +M+ L ++VSTAYC+ + E Y PP +P ++I L ++
Sbjct: 244 MLGTKRLVELCHRMLSLDALIHVSTAYCNCDRTDVSEVIYAPPYNPDDIISLINWLPEDI 303
Query: 241 LELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAG-MPCMILRPSIIIPIWKDPLPGWTDN 299
L+ L L+ PN Y +TK L E ++ + EAG +P I+RPSI+ +P GW DN
Sbjct: 304 LDQLTPRLIGKRPNTYTFTKALAEHMLLK--EAGNLPVAIVRPSIVTASLNEPFAGWVDN 361
Query: 300 INGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359
NGPTGL+ KG+ RTM C+ + AD +PVD+++N ++ + W + N + + N
Sbjct: 362 FNGPTGLVSALAKGMFRTMMCEKNYVADMVPVDIVINLMIAAAWRTATRKSNNLLIYNCC 421
Query: 360 ANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAM-TNR------------------- 399
+ I W + +++ R K PL LWYP G + NR
Sbjct: 422 TGQRNPIIWSEFVKHAMTSVR-KHPLEGCLWYPTGDLRMNRPMNTLNCIAKHFLPAYILD 480
Query: 400 ------GYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMMNEKEAIRYEIAM 453
G +P + V N+I K + EY+ W FK++N+HAL + ++ K+ EI +
Sbjct: 481 GVARIMGKKPFVVNVQNKIAKAVECLEYFATRQWRFKDDNVHALLHTLSPKD---REIFV 537
Query: 454 F--RDLDEAKAYFEMCIHGARQYLLGEPPETLPGAKRHVRIMYYVHVITQ---VLLLGFF 508
F R ++ K Y E + G R++L + PE+LP +++ + +YY+H +T+ VLL F
Sbjct: 538 FDVRHINWDK-YVERYVLGFREFLFKQRPESLPASRKRMLRLYYLHQLTKLVAVLLTWRF 596
Query: 509 L 509
L
Sbjct: 597 L 597
|
Catalyzes the reduction of saturated fatty acyl-CoA to fatty alcohols. Drosophila melanogaster (taxid: 7227) EC: 1EC: .EC: 2EC: .EC: 1EC: .EC: nEC: 2 |
| >sp|Q7ZXF5|FACR1_XENLA Fatty acyl-CoA reductase 1 OS=Xenopus laevis GN=far1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (746), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 176/482 (36%), Positives = 270/482 (56%), Gaps = 39/482 (8%)
Query: 60 EHKNIFITGASGFVGKVLLEKILRTCENVK-IYILLRPKKNKNSRERLEEIFQSPLYEAL 118
+ KN+ ITGA+GF+GKVLLEK+LR+C N K +Y+L+R K + RER+ E+ L++ L
Sbjct: 9 QGKNVLITGATGFMGKVLLEKLLRSCPNTKAVYVLVRHKAGQKPRERVAEMMSCKLFDKL 68
Query: 119 KKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVF 178
+ EQ + A +KVI I+ ++ P+L +S ED+ L + I IV+H AATVRF++ ++ +
Sbjct: 69 RDEQPDCA--QKVIAISSELTQPELDMSKEDQDTLIDCIDIVFHCAATVRFNESLRDAMQ 126
Query: 179 LNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSK 238
LN TR +L L+++M L++F++VSTAY + K +EE YPPPV P +IE E +
Sbjct: 127 LNVIATRQLLYLAQKMKKLEVFIHVSTAYANCNRKQIEEVVYPPPVDPKKLIESLEWMDD 186
Query: 239 NELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTD 298
+ + + +L+ D PN Y YTK L E VV + + + I+RPSI+ WK+P PGW D
Sbjct: 187 SLVNDITPKLIGDRPNTYTYTKALAEYVVQQE-GSKLNIAIVRPSIVGASWKEPFPGWID 245
Query: 299 NINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358
N NGP+GL I AGKGI+RTM + AD +PVDV+VN L + W N M V N
Sbjct: 246 NFNGPSGLFIAAGKGILRTMRASNNAVADLIPVDVVVNTTLAAAWYSGVNRPKNMLVYNC 305
Query: 359 TANKDFQITW----YDIIENGK------DIARNKVPL--NNVLWYPGGAMTNR------- 399
T W Y +I K R V L N++L++ A++++
Sbjct: 306 TTGGTNPFHWGEVEYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVSHKAPALLYD 365
Query: 400 ------GYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMMN--EKEAIRYEI 451
G P + + R+ + + EY+T NSW + NEN + L + ++ +K+ +++
Sbjct: 366 VYLRITGRSPRMMKTITRLHRAMMLLEYFTSNSWVWNNENTNMLMSQLSPEDKKVFNFDV 425
Query: 452 AMFRDLDEAKAYFEMCIHGARQYLLGEPPETLPGAKRHV----RIMYYVHVITQVLLLGF 507
R L A+ Y E G ++Y+L E LP A++H+ I Y + I VL+
Sbjct: 426 ---RQLHWAE-YMENYCMGTKKYVLNEEMSGLPAARKHLNKLRNIRYGFNTILVVLIWRV 481
Query: 508 FL 509
F+
Sbjct: 482 FI 483
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Xenopus laevis (taxid: 8355) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q922J9|FACR1_MOUSE Fatty acyl-CoA reductase 1 OS=Mus musculus GN=Far1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 289 bits (740), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 174/481 (36%), Positives = 273/481 (56%), Gaps = 37/481 (7%)
Query: 60 EHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEAL 118
E KNI +TGA+GF+GKVLLEK+LR+C V +Y+L+R K + +ER+EEI S L++ L
Sbjct: 9 EGKNILLTGATGFLGKVLLEKLLRSCPRVNSVYVLVRQKAGQTPQERVEEILSSKLFDRL 68
Query: 119 KKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVF 178
+ E + EK+I IN ++ P L +S ED++++ ++ ++++H AATVRF++ ++ V
Sbjct: 69 RDENPD--FREKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNENLRDAVQ 126
Query: 179 LNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSK 238
LN TR ++ L++QM +L++F++VSTAY + K ++E YPPPV P +I+ E +
Sbjct: 127 LNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLEWMDD 186
Query: 239 NELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTD 298
+ + +L+ D PN Y YTK L E VV + A + I+RPSI+ WK+P PGW D
Sbjct: 187 GLVNDITPKLIGDRPNTYIYTKALAEYVVQQ-EGAKLNVAIVRPSIVGASWKEPFPGWID 245
Query: 299 NINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTW-NFLSNPGNTMRVIN 357
N NGP+GL I AGKGI+RTM + AD +PVDV+VN L + W + ++ P N M V N
Sbjct: 246 NFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNRPRNIM-VYN 304
Query: 358 LTANKDFQITW----YDIIENGK------DIARNKVPL--NNVLWYPGGAMTNR------ 399
T W Y +I K R V L N++L++ A++++
Sbjct: 305 CTTGSTNPFHWGEVEYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVSHKAPAFLY 364
Query: 400 -------GYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMMNEKEAIRYEIA 452
G P + + R+ K EY+T NSW + +N++ L N +N ++ + I
Sbjct: 365 DIYLRMTGRSPRMMKTITRLHKAMVFLEYFTSNSWVWNTDNVNMLMNQLNPEDKKTFNID 424
Query: 453 MFRDLDEAKAYFEMCIHGARQYLLGEPPETLPGAKRHV----RIMYYVHVITQVLLLGFF 508
+ R L A+ Y E G ++Y+L E LP A++H+ I Y + I +L+ F
Sbjct: 425 V-RQLHWAE-YIENYCMGTKKYVLNEEMSGLPAARKHLNKLRNIRYGFNTILVILIWRIF 482
Query: 509 L 509
+
Sbjct: 483 I 483
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q5R834|FACR1_PONAB Fatty acyl-CoA reductase 1 OS=Pongo abelii GN=FAR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 172/481 (35%), Positives = 272/481 (56%), Gaps = 37/481 (7%)
Query: 60 EHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEAL 118
E KN+ +TGA+GF+GKVLLEK+LR+C V +Y+L+R K + +ER+EE+ L++ L
Sbjct: 9 EGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEVLSGKLFDRL 68
Query: 119 KKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVF 178
+ E + EK+I IN ++ P L +S ED++++ E+ +I++H AATVRF++ ++ V
Sbjct: 69 RDENPD--FREKIIAINSELTQPKLALSEEDKEVIIESTNIIFHCAATVRFNENLRDAVQ 126
Query: 179 LNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSK 238
LN TR ++ L++QM +L++F++VSTAY + K ++E YPPPV P +I+ E +
Sbjct: 127 LNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLEWMDD 186
Query: 239 NELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTD 298
+ + +L+ D PN Y YTK L E VV + A + I+RPSI+ WK+P PGW D
Sbjct: 187 GLVNDITPKLIGDRPNTYIYTKALAEYVVQQ-EGAKLNVAIVRPSIVGASWKEPFPGWID 245
Query: 299 NINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTW-NFLSNPGNTMRVIN 357
N NGP+GL I AGKGI+RT+ + AD +PVDV+VN L + W + ++ P N M V N
Sbjct: 246 NFNGPSGLFIAAGKGILRTIRASNNALADLVPVDVVVNMSLAAAWYSGVNRPRNIM-VYN 304
Query: 358 LTANKDFQITW----YDIIENGK------DIARNKVPL--NNVLWYPGGAMTNR------ 399
T W Y +I K R V L N++L++ A++++
Sbjct: 305 CTTGSTNPFHWGEVEYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVSHKAPAFLY 364
Query: 400 -------GYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMMNEKEAIRYEIA 452
G P + + R+ K EY+T NSW + +N++ L N +N ++ + I
Sbjct: 365 DIYLRMTGRSPRMMKTITRLHKAMVFLEYFTSNSWVWNTDNVNMLMNQLNPEDKKTFNID 424
Query: 453 MFRDLDEAKAYFEMCIHGARQYLLGEPPETLPGAKRHV----RIMYYVHVITQVLLLGFF 508
+ R L A+ Y E G ++Y+L E LP A++H+ I Y + I +L+ F
Sbjct: 425 V-RQLHWAE-YIENYCLGTKKYVLNEEMSGLPAARKHLNKLRNIRYGFNTILVILIWRIF 482
Query: 509 L 509
+
Sbjct: 483 I 483
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q8WVX9|FACR1_HUMAN Fatty acyl-CoA reductase 1 OS=Homo sapiens GN=FAR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 172/481 (35%), Positives = 272/481 (56%), Gaps = 37/481 (7%)
Query: 60 EHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEAL 118
E KN+ +TGA+GF+GKVLLEK+LR+C V +Y+L+R K + +ER+EE+ L++ L
Sbjct: 9 EGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEVLSGKLFDRL 68
Query: 119 KKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVF 178
+ E + EK+I IN ++ P L +S ED++++ ++ +I++H AATVRF++ ++ V
Sbjct: 69 RDENPD--FREKIIAINSELTQPKLALSEEDKEVIIDSTNIIFHCAATVRFNENLRDAVQ 126
Query: 179 LNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSK 238
LN TR ++ L++QM +L++F++VSTAY + K ++E YPPPV P +I+ E +
Sbjct: 127 LNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLEWMDD 186
Query: 239 NELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTD 298
+ + +L+ D PN Y YTK L E VV + A + I+RPSI+ WK+P PGW D
Sbjct: 187 GLVNDITPKLIGDRPNTYIYTKALAEYVVQQ-EGAKLNVAIVRPSIVGASWKEPFPGWID 245
Query: 299 NINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTW-NFLSNPGNTMRVIN 357
N NGP+GL I AGKGI+RT+ + AD +PVDV+VN L + W + ++ P N M V N
Sbjct: 246 NFNGPSGLFIAAGKGILRTIRASNNALADLVPVDVVVNMSLAAAWYSGVNRPRNIM-VYN 304
Query: 358 LTANKDFQITW----YDIIENGK------DIARNKVPL--NNVLWYPGGAMTNR------ 399
T W Y +I K R V L N++L++ A++++
Sbjct: 305 CTTGSTNPFHWGEVEYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVSHKAPAFLY 364
Query: 400 -------GYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMMNEKEAIRYEIA 452
G P + + R+ K EY+T NSW + EN++ L N +N ++ + I
Sbjct: 365 DIYLRMTGRSPRMMKTITRLHKAMVFLEYFTSNSWVWNTENVNMLMNQLNPEDKKTFNID 424
Query: 453 MFRDLDEAKAYFEMCIHGARQYLLGEPPETLPGAKRHV----RIMYYVHVITQVLLLGFF 508
+ R L A+ Y E G ++Y+L E LP A++H+ I Y + I +L+ F
Sbjct: 425 V-RQLHWAE-YIENYCLGTKKYVLNEEMSGLPAARKHLNKLRNIRYGFNTILVILIWRIF 482
Query: 509 L 509
+
Sbjct: 483 I 483
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q5ZM72|FACR1_CHICK Fatty acyl-CoA reductase 1 OS=Gallus gallus GN=FAR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 175/483 (36%), Positives = 272/483 (56%), Gaps = 41/483 (8%)
Query: 60 EHKNIFITGASGFVGKVLLEKILRTCENVK-IYILLRPKKNKNSRERLEEIFQSPLYEAL 118
E KN+ +TGA+GF+GKVLLEK+LR+C VK +Y+L+RPK + R+EEI L++ L
Sbjct: 9 EGKNVLLTGATGFMGKVLLEKLLRSCPKVKAVYVLVRPKAGQTPEARIEEITSCKLFDRL 68
Query: 119 KKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVF 178
++EQ + EK+I I ++ P+L +S ++ L E I+I++H AATVRF++ ++ V
Sbjct: 69 REEQPDFK--EKIIVITSELTQPELDLSNPVKEKLIECINIIFHCAATVRFNETLRDAVQ 126
Query: 179 LNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSK 238
LN T+ +L+L++QM +L++F++VSTAY + K +EE YPPPV P +++ E +
Sbjct: 127 LNVLSTKQLLSLAQQMTNLEVFMHVSTAYAYCNRKHIEEVVYPPPVDPKKLMDSLEWMDD 186
Query: 239 NELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTD 298
+ + + +L+ D PN Y YTK L E VV + A + I+RPSI+ WK+P PGW D
Sbjct: 187 SLVNDITPKLIGDRPNTYTYTKALAEYVVQQ-EGARLNTAIIRPSIVGASWKEPFPGWID 245
Query: 299 NINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTW-NFLSNPGNTMRVIN 357
N NGP+GL I AGKGI+RTM AD +PVDV+VN L + W + ++ P N M V N
Sbjct: 246 NFNGPSGLFIAAGKGILRTMRASNGAVADLVPVDVVVNMTLAAAWYSGVNRPRNIM-VYN 304
Query: 358 LTANKDFQITW----YDIIENGK------DIARNKVPL--NNVLWYPGGAMTNR------ 399
T W Y +I K R V L N++L++ A++++
Sbjct: 305 CTTGGTNPFHWSEVEYHVISTFKRNPLEQAFRRPNVNLTSNHLLYHYWIAVSHKAPAFLY 364
Query: 400 -------GYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMMN--EKEAIRYE 450
G P + + R+ K EY+T NSW + EN+ L N ++ +K+ ++
Sbjct: 365 DIYLRITGRSPRMMKTITRLHKAMVFLEYFTSNSWIWNTENMTMLMNQLSPEDKKTFNFD 424
Query: 451 IAMFRDLDEAKAYFEMCIHGARQYLLGEPPETLPGAKRHV----RIMYYVHVITQVLLLG 506
+ R L A+ Y E G ++Y+L E LP A++H+ I Y + I +L+
Sbjct: 425 V---RQLHWAE-YMENYCMGTKKYVLNEEMSGLPAARKHLNKLRNIRYGFNTILVILIWR 480
Query: 507 FFL 509
F+
Sbjct: 481 IFI 483
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Gallus gallus (taxid: 9031) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q66H50|FACR1_RAT Fatty acyl-CoA reductase 1 OS=Rattus norvegicus GN=Far1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (730), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 169/482 (35%), Positives = 267/482 (55%), Gaps = 39/482 (8%)
Query: 60 EHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEAL 118
E KNI +TGA+GF+GKVLLEK+LR+C V +Y+L+R K + +ER+EEI L++ L
Sbjct: 9 EGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEILSGKLFDRL 68
Query: 119 KKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVF 178
+ E + +K+I IN ++ P L +S ED++++ ++ ++++H AATVRF++ ++ V
Sbjct: 69 RDENPD--FRQKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNENLRDAVQ 126
Query: 179 LNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSK 238
LN TR ++ L++QM +L++F++VSTAY + K ++E YPPPV P +I+ E +
Sbjct: 127 LNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLEWMDD 186
Query: 239 NELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTD 298
+ + +L+ D PN Y YTK L E VV + A + I+RPSI+ WK+P PGW D
Sbjct: 187 GLVNDITPKLIGDRPNTYIYTKALAEYVVQQ-EGAKLNVAIVRPSIVGASWKEPFPGWID 245
Query: 299 NINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTW-NFLSNPGNTMRVIN 357
N NGP+GL I AGKGI+RTM + AD +PVDV+VN L + W + ++ P N M V N
Sbjct: 246 NFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNRPRNIM-VYN 304
Query: 358 LTANKDFQITWYDIIENGKDIARNKVPLNNVLWYP------------------------- 392
T W ++ + + PLN V +P
Sbjct: 305 CTTGSTNPFHWGEVGDYLNHSFKTN-PLNQVFRHPYVKFYSNNLMLHYWKGVKHTVPALL 363
Query: 393 -GGAMTNRGYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMMNEKEAIRYEI 451
A+ G +P + + R+ K EY+T NSW + +N++ L N +N ++ + I
Sbjct: 364 LDLALRLTGQKPWMMKTITRLHKAMVFLEYFTSNSWVWNTDNVNMLMNQLNPEDKKTFNI 423
Query: 452 AMFRDLDEAKAYFEMCIHGARQYLLGEPPETLPGAKRHV----RIMYYVHVITQVLLLGF 507
+ R L A+ Y E G ++Y+L E LP A++H+ I Y + I +L+
Sbjct: 424 DV-RQLHWAE-YIENYCMGTKKYVLNEEMSGLPAARKHLNKLRNIRYGFNTILVILIWRI 481
Query: 508 FL 509
F+
Sbjct: 482 FI 483
|
Catalyzes the reduction of saturated fatty acyl-CoA with chain length C16 or C18 to fatty alcohols. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q960W6|FACR3_DROME Putative fatty acyl-CoA reductase CG8306 OS=Drosophila melanogaster GN=CG8306 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 163/478 (34%), Positives = 269/478 (56%), Gaps = 46/478 (9%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKK 120
+N+FITGA+GFVG ++EK+LR NV +Y+L+R KK K+ +ERLEE+ ++ +++ K+
Sbjct: 13 RNVFITGATGFVGVTIVEKLLRDVPNVGTLYLLMRAKKGKSVQERLEELKKNSVFDKFKE 72
Query: 121 EQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLN 180
Q +S + K++PI GDV + LGIS +DRQ L + +++V+H AAT+ F ++ +N
Sbjct: 73 LQLQSRL-SKIVPIEGDVGLEHLGISPKDRQTLIDNVNVVFHSAATLDFFQSLKETTNIN 131
Query: 181 TRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNE 240
RGTR ++ L +Q+ +L V+VS+AY + +EEK YP P P +I+ +E L+ +
Sbjct: 132 LRGTRRVVELCQQIKNLDALVHVSSAYVNAYLTKVEEKLYPAPEDPEKIIQLSETLNDDA 191
Query: 241 LELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNI 300
L+ L+ +LL+D PN Y +TK L E V + + PC I+RPS+I WK+P+PGWT +
Sbjct: 192 LKELEPKLLKDHPNTYTFTKHLAEHEVAN-VASKFPCGIVRPSMITAAWKEPIPGWTISK 250
Query: 301 NGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS----NPGN--TMR 354
NGP G +GA KG++R + D S D++P+DV+VNG++ + + S N G ++
Sbjct: 251 NGPQGFFMGASKGVLRRLPLDPSIIMDYIPIDVVVNGIITTGYYVNSLQAKNGGRPADLQ 310
Query: 355 VINLTAN--KDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMTNR------------- 399
+ +LT++ K F+ ++++ + + + PLN+ +WYP +
Sbjct: 311 IFHLTSSTYKPFR---FELMTDKINSYLHDYPLNSAVWYPNLRLVKSLWVFRLSAILFHF 367
Query: 400 -------------GYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMMNEKEA 446
G P+L R+H + + E + W F ++ L AL +N +
Sbjct: 368 IPAIILDLVTKIGGGRPILVRLHKNVWNSLNTLEKFIFTEWHFDSKRLLALSKTLNIVDK 427
Query: 447 IRYEIAMFRDLDEAK--AYFEMCIHGARQYLLGEPPETLPGAKRHVRIMYYVHVITQV 502
++ F D+ E YF I G RQYL EP + L A+R +I+ +HV Q+
Sbjct: 428 KKF----FIDIGELAWDEYFSNTILGVRQYLSKEPIKNLEKARRKDKILLGLHVALQL 481
|
Catalyzes the reduction of saturated fatty acyl-CoA to fatty alcohols. Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q7TNT2|FACR2_MOUSE Fatty acyl-CoA reductase 2 OS=Mus musculus GN=Far2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 255 bits (651), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 158/491 (32%), Positives = 258/491 (52%), Gaps = 46/491 (9%)
Query: 55 ISATLEHKNIFITGASGFVGKVLLEKILRTCENVK-IYILLRPKKNKNSRERLEEIFQSP 113
I+A +K+I ITGA+GF+GKVL+EK+ RT ++K IYIL+RPK + +ER+ +I S
Sbjct: 4 IAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILVRPKSGQTLQERVFQILNSK 63
Query: 114 LYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYM 173
L+E +K+ + EK+ PI+ D+ D IS ED Q L +I++H AATVRFD ++
Sbjct: 64 LFEKVKEVCPN--VHEKIRPISADLNQRDFAISKEDVQELLSCTNIIFHCAATVRFDAHL 121
Query: 174 QTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKA 233
+ V LN T+ +L ++ QM L+ F+++STA+ + ++E YP PV P +I+
Sbjct: 122 REAVQLNVTATQQLLLMASQMPKLEAFIHISTAFSNCNLSHIDEVIYPCPVEPRKIIDSM 181
Query: 234 ELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAG-MPCMILRPSIIIPIWKDP 292
E L + +E + +L+ D PN Y YTK L E VV + E+G + I+RPSI+ W++P
Sbjct: 182 EWLDDSIIEEITPKLIGDRPNTYTYTKALGEIVVQQ--ESGNLNVAIVRPSIVGATWQEP 239
Query: 293 LPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTW-NFLSNPGN 351
PGW DN+NGP+GL+I GKG +R++ AD +PVD +VN + W + P +
Sbjct: 240 FPGWVDNLNGPSGLIIATGKGFLRSIKATPMAVADVIPVDTVVNLTIAVGWYTAVHRPKS 299
Query: 352 TMRVINLTANKDFQITWYDIIENGKDIARN--KVPLNNVLWYPGGAMTNR---------- 399
T+ + + N + WY + G + K+P + P T
Sbjct: 300 TLIYHSTSGNLN-PCNWYKM---GLQVLATIEKIPFESAFRRPNADFTTSNFTTHYWNTV 355
Query: 400 ----------------GYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMMN- 442
G +P + ++ NR+ K + EY+ +SW + N L + ++
Sbjct: 356 SHRVPAIIYDFYLRLTGRKPRMLKLMNRLLKTISMLEYFINHSWEWSTNNTEMLLSELSP 415
Query: 443 -EKEAIRYEIAMFRDLDEAKAYFEMCIHGARQYLLGEPPETLPGAKRHVRIMYYVHVITQ 501
++ +++ L+ Y E + G ++YLL E +P AK+H+R + +H +
Sbjct: 416 EDQRVFNFDVRQLNWLE----YIENYVLGVKKYLLKEDLAGIPKAKQHLRRLRNIHYLFN 471
Query: 502 VLLLGFFLWVL 512
L +W L
Sbjct: 472 TALF-LIIWRL 481
|
Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C16, C18, C18:1 and C18:2 but low activity can be observed with C10-C14 substrates. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
| >sp|Q0P5J1|FACR2_BOVIN Fatty acyl-CoA reductase 2 OS=Bos taurus GN=FAR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 250 bits (639), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 156/491 (31%), Positives = 265/491 (53%), Gaps = 41/491 (8%)
Query: 55 ISATLEHKNIFITGASGFVGKVLLEKILRTCENVKI-YILLRPKKNKNSRERLEEIFQSP 113
I+A K+I ITGA+GF+GKVL+EK+ RT ++K+ YIL+RPK+ + ++R+ +I S
Sbjct: 4 IAAFYGGKSILITGATGFMGKVLMEKLFRTSPDLKVVYILVRPKQGQTLQQRVFQILDSK 63
Query: 114 LYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYM 173
L+E +K+ + EK+ I+ D+ D IS ED + L +I++H AATVRFDD++
Sbjct: 64 LFEKVKEVCPN--VHEKIRAISADLNQNDFAISKEDMKELLSHTNIIFHCAATVRFDDHL 121
Query: 174 QTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKA 233
+ V LN T+ +L ++ QM L+ F+++STA+ + K ++E YP PV P +I+
Sbjct: 122 RHAVQLNVTATQQLLLMASQMPKLEAFIHISTAFSNCNLKHIDEVVYPCPVEPKKIIDSM 181
Query: 234 ELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAG-MPCMILRPSIIIPIWKDP 292
E L ++ + +L+ D+PN Y YTK L E VV + E G + I+RPSI+ W++P
Sbjct: 182 EWLDDAIIDEITPKLIGDWPNTYTYTKALGEVVVQQ--EGGNLNIAIIRPSIMGATWQEP 239
Query: 293 LPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTW-NFLSNPGN 351
PGW DN+NGP+GL+I AGKG +R++ AD +P D +VN L W + P +
Sbjct: 240 FPGWVDNLNGPSGLIIAAGKGFLRSIRATPMAVADLIPADTVVNLTLAVGWYTAVHRPKS 299
Query: 352 TMRVINLTANKDFQITW----------YDIIENGKDIARNKVPL--NNVLWYPGGAMTNR 399
T+ V + T+ W ++ I + R NN+ + A+++R
Sbjct: 300 TL-VYHCTSGNLNPCNWGKMGLQVLATFEKIPFERAFRRPNADFTTNNITTHYWNAVSHR 358
Query: 400 -------------GYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMMN--EK 444
G +P + ++ NR+ + + EY+ SW + N L + ++ ++
Sbjct: 359 APAIIYDFYLRLTGRKPRMTKLMNRLLRTLSMLEYFVNRSWEWSTYNTEMLMSELSPEDQ 418
Query: 445 EAIRYEIAMFRDLDEAKAYFEMCIHGARQYLLGEPPETLPGAKRHVRIMYYVHVI--TQV 502
+++ L+ Y E + G ++YLL E +P AK+H++ + +H + T +
Sbjct: 419 RVFNFDVRQLNWLE----YIENYVLGVKKYLLKEDMAGIPEAKQHLKRLRNIHYLFNTAL 474
Query: 503 LLLGFFLWVLR 513
L+ + L + R
Sbjct: 475 FLIAWRLLIAR 485
|
Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. The preferred substrates are C16, C18, C18:1 and C18:2 but low activity can be observed with C10-C14 substrates. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 2 EC: . EC: 1 EC: . EC: n EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 762 | ||||||
| 328706792 | 559 | PREDICTED: putative fatty acyl-CoA reduc | 0.612 | 0.835 | 0.492 | 1e-145 | |
| 350423751 | 517 | PREDICTED: putative fatty acyl-CoA reduc | 0.606 | 0.893 | 0.505 | 1e-144 | |
| 340722988 | 517 | PREDICTED: putative fatty acyl-CoA reduc | 0.606 | 0.893 | 0.505 | 1e-143 | |
| 156551579 | 517 | PREDICTED: putative fatty acyl-CoA reduc | 0.628 | 0.926 | 0.480 | 1e-140 | |
| 66547347 | 516 | PREDICTED: putative fatty acyl-CoA reduc | 0.635 | 0.937 | 0.471 | 1e-139 | |
| 383858922 | 517 | PREDICTED: putative fatty acyl-CoA reduc | 0.604 | 0.891 | 0.491 | 1e-139 | |
| 298569765 | 516 | putative fatty acyl-CoA reductase [Apis | 0.635 | 0.937 | 0.470 | 1e-138 | |
| 298402913 | 525 | fatty-acyl CoA reductase 3 [Ostrinia nub | 0.602 | 0.874 | 0.482 | 1e-135 | |
| 307211548 | 517 | Fatty acyl-CoA reductase 1 [Harpegnathos | 0.587 | 0.866 | 0.494 | 1e-135 | |
| 332021355 | 544 | Putative fatty acyl-CoA reductase [Acrom | 0.598 | 0.838 | 0.483 | 1e-134 |
| >gi|328706792|ref|XP_001949683.2| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 245/497 (49%), Positives = 344/497 (69%), Gaps = 30/497 (6%)
Query: 43 AIPKKFKHLPDRISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKN 101
+P + HLPDR+S T K IFITG SGF+GKVL+EK+LR C ++ +IY+LLR KK N
Sbjct: 23 VLPDELSHLPDRVSKTFVGKTIFITGGSGFLGKVLIEKLLRKCPDIERIYLLLRTKKGSN 82
Query: 102 SRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVY 161
++R+E IF S L++ LK E + KV PI GDV+ P+L I+ DR++L++T+ IVY
Sbjct: 83 PKQRVETIFSSVLFDYLK-ELRGVEVLNKVYPIAGDVSEPNLAINESDRRLLADTVQIVY 141
Query: 162 HIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYP 221
H AAT+RFD+ ++ V LNTRGT+ +L L+K+M +LQ+FVYVST+YCH +EKVL EK YP
Sbjct: 142 HAAATIRFDEALKKAVLLNTRGTKMVLELAKEMKNLQVFVYVSTSYCHLEEKVLFEKAYP 201
Query: 222 PPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILR 281
PP PH +I+ E+L + +E + +E+L FPN YA+TKCL E +V E +EAG+PC+I R
Sbjct: 202 PPADPHKIIQSMEMLDEPFVETISKEILGSFPNSYAFTKCLSEHLVVEQIEAGLPCIIAR 261
Query: 282 PSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLS 341
PSI+IPIWK+PLPGWTDNINGPTGLLIGAGKG+IRTM+C AD+LPVD+ VNG++L
Sbjct: 262 PSIVIPIWKEPLPGWTDNINGPTGLLIGAGKGVIRTMFCHNQGYADYLPVDITVNGIILF 321
Query: 342 TWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMTN--- 398
TWN++ N T + +LT+++++++TW +II+ GK I +VPLN +WYPGG+M +
Sbjct: 322 TWNYIGNNDTTRTICHLTSSQEWRVTWQEIIDIGKSIVTTEVPLNGAVWYPGGSMKSSKL 381
Query: 399 -----------------------RGYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLH 435
G +P L R+ +RI KGF++FEYY N W F+NE++H
Sbjct: 382 VHNICVFFLHTIPAYFLDAVIYLSGNKPCLVRIQDRINKGFEVFEYYANNQWEFRNEHVH 441
Query: 436 ALRNMMNEKEAIRYEIAMFRDLDEAKAYFEMCIHGARQYLLGEPPETLPGAKRHVRIMYY 495
+R +MN++E Y++ D+D + YF CI AR Y+L E P+TLP A+ H++IMYY
Sbjct: 442 YMRRIMNQREKFEYKVDG-NDMD-IRNYFRDCIMAARIYILKETPDTLPRARIHMKIMYY 499
Query: 496 VHVITQVLLLGFFLWVL 512
V +I ++L LW +
Sbjct: 500 VDIIAKILFFSLLLWTI 516
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350423751|ref|XP_003493580.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 249/493 (50%), Positives = 345/493 (69%), Gaps = 31/493 (6%)
Query: 47 KFKHLPDRISATLEHKNIFITGASGFVGKVLLEKILRTCENVK-IYILLRPKKNKNSRER 105
K + +PDRI+ T E +NI ITG +GF+GKV++EK+LR +N K IY+L+R KK K+ + R
Sbjct: 5 KTEDIPDRIAETFEGQNILITGGTGFLGKVVIEKLLRCVQNTKQIYMLIRTKKEKDPKHR 64
Query: 106 LEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAA 165
LEEIF SPL+E +K+++ + + V ++GDV++P LGIS+EDR+ML E I+IVYH AA
Sbjct: 65 LEEIFNSPLFEKVKRQRGAEVLKKSVTVVSGDVSLPGLGISSEDRKMLCEKINIVYHAAA 124
Query: 166 TVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVS 225
TVRFD+ ++ V LNTRGT+ ML L+K+M HL+LF ++STAYCH +EK+L EK YPPP
Sbjct: 125 TVRFDELLKKAVLLNTRGTKQMLELAKEMKHLKLFAHISTAYCHLEEKILREKPYPPPAD 184
Query: 226 PHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSII 285
PH +I+ E + + +E + ++L PN YA+TK L EG+V E M +P +ILRPSI+
Sbjct: 185 PHKIIKCVEWMDDDVVEAMTDKILGHLPNTYAFTKALSEGLVEEAM-PHIPAIILRPSIV 243
Query: 286 IPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF 345
IPIWK+P+PGWTDNINGPTGLLIGAGKG+IRTMYC+ S+ AD+LPVD+ VN +L S+WNF
Sbjct: 244 IPIWKEPVPGWTDNINGPTGLLIGAGKGVIRTMYCNDSSYADYLPVDIAVNAILASSWNF 303
Query: 346 LSNPGNTMRVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMTNR------ 399
+ + RV NLT++ +F+++W +II G+ I KVPLN V+WYPGG+M
Sbjct: 304 IYCKDHEKRVYNLTSSSEFKVSWAEIIARGRKIT-EKVPLNGVVWYPGGSMKKSRLMHNI 362
Query: 400 --------------------GYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRN 439
GY+P++ RV RI+KGF++FEYY N W F N N+ LRN
Sbjct: 363 CVLLFHMIPAYLIDGLIFLAGYKPIMCRVQRRIQKGFEVFEYYANNQWDFDNSNIFELRN 422
Query: 440 MMNEKEAIRYEIAMFRDLDEAKAYFEMCIHGARQYLLGEPPETLPGAKRHVRIMYYVHVI 499
+N E +Y++ +D+D AYFE CI AR Y+L EPPETLP A+RH+RIMY+V VI
Sbjct: 423 KLNPVEYKKYQLHG-KDMD-IDAYFETCIRAARIYILNEPPETLPAARRHLRIMYWVDVI 480
Query: 500 TQVLLLGFFLWVL 512
T++L ++++
Sbjct: 481 TKILFFVLLIYMV 493
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340722988|ref|XP_003399881.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust.
Identities = 249/493 (50%), Positives = 344/493 (69%), Gaps = 31/493 (6%)
Query: 47 KFKHLPDRISATLEHKNIFITGASGFVGKVLLEKILRTCENVK-IYILLRPKKNKNSRER 105
K + +PDRI+ T E +NI ITG +GF+GKV++EK+LR +N K IY+L+R KK K+ + R
Sbjct: 5 KTEDIPDRIAETFEGQNILITGGTGFLGKVVIEKLLRCVQNTKQIYMLIRTKKEKDPKHR 64
Query: 106 LEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAA 165
LEEIF SPL+E +K+++ + + V I+GDV++P LGIS+EDR+ML E I+IVYH AA
Sbjct: 65 LEEIFNSPLFEKVKRQRGAEILKKSVTVISGDVSLPGLGISSEDRKMLCEKINIVYHAAA 124
Query: 166 TVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVS 225
TVRFD+ ++ V LNTRGT+ ML L+K+M HL+LF ++STAYCH +EK+L EK YPPP
Sbjct: 125 TVRFDELLKKAVLLNTRGTKQMLELAKEMKHLKLFAHISTAYCHLEEKILREKPYPPPAD 184
Query: 226 PHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSII 285
PH +I+ E + + +E + ++L PN YA+TK L E +V E M +P +ILRPSI+
Sbjct: 185 PHKIIKCVEWMDDDVVEAMTDKILGHLPNTYAFTKALSESLVEEAM-PHIPAIILRPSIV 243
Query: 286 IPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF 345
IPIWK+P+PGWTDNINGPTGLLIGAGKG+IRTMYC+ S+ AD+LPVD+ VN +L S+WNF
Sbjct: 244 IPIWKEPVPGWTDNINGPTGLLIGAGKGVIRTMYCNDSSYADYLPVDIAVNAILASSWNF 303
Query: 346 LSNPGNTMRVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMTNR------ 399
+ + RV NLT++ +F+++W +II G+ I KVPLN V+WYPGG+M
Sbjct: 304 IYCKDHEKRVYNLTSSSEFKVSWAEIIARGRRIT-EKVPLNGVVWYPGGSMKKSRLMHNI 362
Query: 400 --------------------GYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRN 439
GY+P++ RV RI+KGF++FEYY N W F N N+ LRN
Sbjct: 363 CVLLFHMIPAYLIDGLIFLAGYKPIMCRVQRRIQKGFEVFEYYANNQWDFDNSNIFELRN 422
Query: 440 MMNEKEAIRYEIAMFRDLDEAKAYFEMCIHGARQYLLGEPPETLPGAKRHVRIMYYVHVI 499
+N E +Y++ +D+D AYFE CI AR Y+L EPPETLP A+RH+RIMY+V VI
Sbjct: 423 KLNPVEYEKYQLHG-KDMD-IDAYFETCIRAARIYILNEPPETLPAARRHLRIMYWVDVI 480
Query: 500 TQVLLLGFFLWVL 512
T++L ++++
Sbjct: 481 TKILFFVLLIYMV 493
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156551579|ref|XP_001601970.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 246/512 (48%), Positives = 347/512 (67%), Gaps = 33/512 (6%)
Query: 48 FKHLPDRISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERL 106
+ LPDRI AT + ++I ITG +GF+GKVL+EK LR + ++Y+L+RPKK K+ + RL
Sbjct: 6 LEDLPDRIGATFKGRDILITGGTGFLGKVLVEKFLRCLPEINQLYLLVRPKKGKDPKHRL 65
Query: 107 EEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAAT 166
++IF S L+E +K+ + + +KV I+GDV+ P LGISAEDR++L E I IVYH AAT
Sbjct: 66 DDIFNSALFEKVKELRGVEGLKKKVTIISGDVSHPGLGISAEDRKLLCERISIVYHGAAT 125
Query: 167 VRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSP 226
VRFD+ ++ V LNTRGT+ ML+L+K M L+LF ++STAYCH +EKVL EK YPPP P
Sbjct: 126 VRFDELLKRAVILNTRGTKQMLDLAKDMKKLELFAHISTAYCHLEEKVLGEKPYPPPADP 185
Query: 227 HNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIII 286
H +I+ E + +E + ++L D PN YA+TK L EG+V E M +P +ILRPSI+I
Sbjct: 186 HKIIKCVEWMEDEVVEAMTDKILGDLPNTYAFTKALSEGLVEEVMN-DIPAIILRPSIVI 244
Query: 287 PIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346
PIWK+P+ GWTDNINGPTGLLIGAGKG+IRTMYC+ + AD++PVD+ VN +L TWN++
Sbjct: 245 PIWKEPVAGWTDNINGPTGLLIGAGKGVIRTMYCNENGYADYVPVDIGVNAILAVTWNYI 304
Query: 347 SNPGNTMRVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMTNR------- 399
N + RV NLT++ +F+++W +IIE G+ I KVPLN V+WYPGG+M
Sbjct: 305 GNKQHEKRVYNLTSSSEFKVSWAEIIERGRRITE-KVPLNGVVWYPGGSMKKSRLMHNIC 363
Query: 400 -------------------GYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNM 440
G++P++ RVH RI+KGF++FEYY N W F+N N+ LR++
Sbjct: 364 VLFFHMIPAYLIDMLIFLAGHKPIMCRVHRRIQKGFEVFEYYANNQWDFENANIAELRSL 423
Query: 441 MNEKEAIRYEI-AMFRDLDEAKAYFEMCIHGARQYLLGEPPETLPGAKRHVRIMYYVHVI 499
NEKE + Y++ DLD YFE CI AR ++L EPPETLP A+RH+R+MY+V ++
Sbjct: 424 QNEKEKVLYQLHGDDMDLDN---YFENCIRAARVFILNEPPETLPAARRHMRVMYWVDIV 480
Query: 500 TQVLLLGFFLWVLRHPGPKENCISVSGYRLIE 531
T++L ++ + + V G+RL++
Sbjct: 481 TKILFFVLLIYTMACWSDSFKALLVGGWRLLD 512
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|66547347|ref|XP_624493.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/517 (47%), Positives = 346/517 (66%), Gaps = 33/517 (6%)
Query: 53 DRISATLEHKNIFITGASGFVGKVLLEKILRTCENVK-IYILLRPKKNKNSRERLEEIFQ 111
DRI + +++NI ITG +GF+GKV++EK LR ++K IY+L+R K K+ + RLEEIF
Sbjct: 6 DRIEESFKNQNILITGGTGFLGKVIVEKFLRCLPDIKQIYLLIRTKHEKDPKYRLEEIFN 65
Query: 112 SPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDD 171
SPL+E +KK++ + + V INGD+ +P L +S EDR+ML E I+IVYH AA+VRFD+
Sbjct: 66 SPLFEKVKKQRGAETLKKSVTVINGDMTLPGLSLSLEDRKMLCEKINIVYHAAASVRFDE 125
Query: 172 YMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIE 231
++ V LNTRGT++ML L+K+M HL+LF Y+STAYCH +EK+LEEK YPPP+ PH +I+
Sbjct: 126 MLKKAVLLNTRGTKEMLELAKEMKHLKLFAYISTAYCHLEEKILEEKPYPPPIDPHKIIK 185
Query: 232 KAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKD 291
E + + +E + ++L FPN YA+TK L E +V E M +P +ILRPSI+IPIWK+
Sbjct: 186 CVEWMDDDVVEAMTGKILAHFPNTYAFTKALSEALVEEAMPY-IPAIILRPSIVIPIWKE 244
Query: 292 PLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGN 351
PLPGWTDNINGPTG+LIGAGKG++RTMYC+ S+ ADFLPVD+ VN +L S+WNF+ +
Sbjct: 245 PLPGWTDNINGPTGILIGAGKGVLRTMYCNGSSYADFLPVDIAVNAILASSWNFIYCKDH 304
Query: 352 TMRVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMTNR------------ 399
RV +LT++ +F++ W +II G+ I +VPLN V+WYPGG++
Sbjct: 305 EKRVYHLTSSNEFKVPWEEIIARGRKITE-RVPLNGVVWYPGGSIKKSRLMHNICVFFFH 363
Query: 400 --------------GYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMMNEKE 445
GY+P++ RV RI+KGF++FEYYT N W F N N +R+ +N E
Sbjct: 364 IIPAYFIDALIFLAGYKPIMCRVQRRIQKGFEVFEYYTNNQWDFDNSNFMEVRSKLNPVE 423
Query: 446 AIRYEIAMFRDLDEAKAYFEMCIHGARQYLLGEPPETLPGAKRHVRIMYYVHVITQVLLL 505
+Y++ D+D AYFE CI AR Y+L EPPETLP A+RH+RIMY++ VIT++ L
Sbjct: 424 YAKYQVHG-DDMD-IDAYFEACIRAARIYILNEPPETLPAARRHLRIMYWIDVITKIFFL 481
Query: 506 GFFLWVLRHPGPKENCISVSGYRLIECEKPYYVYVIH 542
+++ + + + I +PYY+ H
Sbjct: 482 ILLIYIFASWNESFKALLIGSWSFI--TQPYYINYSH 516
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383858922|ref|XP_003704948.1| PREDICTED: putative fatty acyl-CoA reductase CG5065-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 243/494 (49%), Positives = 343/494 (69%), Gaps = 33/494 (6%)
Query: 47 KFKHLPDRISATLEHKNIFITGASGFVGKVLLEKILRTCENV--KIYILLRPKKNKNSRE 104
K + +PDRI T + +NI ITG +GF+GKV++EK LR C V ++Y+L+R KKNK+ +
Sbjct: 5 KVEEIPDRILETFKDQNILITGGTGFLGKVIVEKFLR-CIPVTQQLYLLVRSKKNKDPKH 63
Query: 105 RLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIA 164
R+EEIF SPL+E +K+++ + + V +NGDV++P LG+S EDR+ML E I+IVYH A
Sbjct: 64 RIEEIFNSPLFEQVKQKRGMEELHKAVTVVNGDVSLPGLGLSPEDRRMLCEKINIVYHGA 123
Query: 165 ATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPV 224
ATVRFD+ ++ V LNTRGT+ ML L+K+M HL+LF ++STAYCH +EK+L EK YPPP
Sbjct: 124 ATVRFDELLKKAVLLNTRGTKQMLELAKEMKHLKLFAHISTAYCHLEEKILGEKPYPPPA 183
Query: 225 SPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSI 284
PH +I+ E + +E + ++L D PN YA+TK L EG+V E M + +P +ILRPSI
Sbjct: 184 DPHKIIKCVEWMDDEVVEAMTDKILGDLPNTYAFTKALSEGLVNEAM-SQIPAIILRPSI 242
Query: 285 IIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWN 344
+IP+WK+P+PGWTDNINGPTGLLI AGKG+IRTMYC+ + AD+LPVD+ VN +L S+WN
Sbjct: 243 VIPVWKEPIPGWTDNINGPTGLLIAAGKGVIRTMYCNENGYADYLPVDIAVNVILASSWN 302
Query: 345 FLSNPGNTMRVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMTNR----- 399
F+ + RV NLT++ +F+++W +II G+ I KVPLN V+WYPGG+M
Sbjct: 303 FIYLKDHEKRVYNLTSSSEFKVSWAEIIARGRKIT-EKVPLNGVVWYPGGSMKKSRLIHN 361
Query: 400 ---------------------GYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALR 438
GY+P++ RV RI+KGF++FEYY N W F+N+N++ +R
Sbjct: 362 ICVFLFHTIPAYLIDALIFLAGYKPIMCRVQRRIQKGFEVFEYYANNQWDFENKNIYEIR 421
Query: 439 NMMNEKEAIRYEIAMFRDLDEAKAYFEMCIHGARQYLLGEPPETLPGAKRHVRIMYYVHV 498
+N E +Y+I D+D AYFE CI AR Y+L EPPETLP A+RH+++MY+V V
Sbjct: 422 EKLNPIEYKKYQIHG-EDMD-IDAYFETCIRAARIYILNEPPETLPAARRHLKLMYWVDV 479
Query: 499 ITQVLLLGFFLWVL 512
IT+++ ++VL
Sbjct: 480 ITKIVFFILLIYVL 493
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|298569765|gb|ADI87411.1| putative fatty acyl-CoA reductase [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 243/517 (47%), Positives = 345/517 (66%), Gaps = 33/517 (6%)
Query: 53 DRISATLEHKNIFITGASGFVGKVLLEKILRTCENVK-IYILLRPKKNKNSRERLEEIFQ 111
DRI + +++NI ITG +GF+GKV++EK LR ++K IY+L+R K K+ + RL EIF
Sbjct: 6 DRIEESFKNQNILITGGTGFLGKVIVEKFLRCLPDIKQIYLLIRTKHEKDPKYRLGEIFN 65
Query: 112 SPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDD 171
SPL+E +KK++ + + V INGD+ +P L +S EDR+ML E I+IVYH AA+VRFD+
Sbjct: 66 SPLFEKVKKQRGAETLKKSVTVINGDMTLPGLSLSLEDRKMLCEKINIVYHAAASVRFDE 125
Query: 172 YMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIE 231
++ V LNTRGT++ML L+K+M HL+LF Y+STAYCH +EK+LEEK YPPP+ PH +I+
Sbjct: 126 MLKKAVLLNTRGTKEMLELAKEMKHLKLFAYISTAYCHLEEKILEEKPYPPPIDPHKIIK 185
Query: 232 KAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKD 291
E + + +E + ++L FPN YA+TK L E +V E M +P +ILRPSI+IPIWK+
Sbjct: 186 CVEWMDDDVVEAMTGKILAHFPNTYAFTKALSEALVEEAMPY-IPAIILRPSIVIPIWKE 244
Query: 292 PLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGN 351
PLPGWTDNINGPTG+LIGAGKG++RTMYC+ S+ ADFLPVD+ VN +L S+WNF+ +
Sbjct: 245 PLPGWTDNINGPTGILIGAGKGVLRTMYCNGSSYADFLPVDIAVNAILASSWNFIYCKDH 304
Query: 352 TMRVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMTNR------------ 399
RV +LT++ +F++ W +II G+ I +VPLN V+WYPGG++
Sbjct: 305 EKRVYHLTSSNEFKVPWEEIIARGRKITE-RVPLNGVVWYPGGSIKKSRLMHNICVFFFH 363
Query: 400 --------------GYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMMNEKE 445
GY+P++ RV RI+KGF++FEYYT N W F N N +R+ +N E
Sbjct: 364 IIPAYFIDALIFLAGYKPIMCRVQRRIQKGFEVFEYYTNNQWDFDNSNFMEVRSKLNPVE 423
Query: 446 AIRYEIAMFRDLDEAKAYFEMCIHGARQYLLGEPPETLPGAKRHVRIMYYVHVITQVLLL 505
+Y++ D+D AYFE CI AR Y+L EPPETLP A+RH+RIMY++ VIT++ L
Sbjct: 424 YAKYQVHG-DDMD-IDAYFEACIRAARIYILNEPPETLPAARRHLRIMYWIDVITKIFFL 481
Query: 506 GFFLWVLRHPGPKENCISVSGYRLIECEKPYYVYVIH 542
+++ + + + I +PYY+ H
Sbjct: 482 ILLIYIFASWNESFKALLIGSWSFI--TQPYYINYSH 516
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|298402913|gb|ADI82776.1| fatty-acyl CoA reductase 3 [Ostrinia nubilalis] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/491 (48%), Positives = 330/491 (67%), Gaps = 32/491 (6%)
Query: 51 LPDRISATLEHKNIFITGASGFVGKVLLEKILRTCENVK-IYILLRPKKNKNSRERLEEI 109
+ DRI+AT ++F+TG +GF+GKVL+EK+LR C ++ IY+L+RPKK K ++RLEE+
Sbjct: 14 MTDRIAATYAGLSVFVTGGTGFMGKVLIEKLLRKCTEIRQIYLLVRPKKGKTPKQRLEEL 73
Query: 110 FQSPLYEALKKEQSE-SAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVR 168
FQ L+E L+ + I EKV I+GDV+ PDL +S DRQ+L E + I+ H AAT+R
Sbjct: 74 FQGELFEQLRNLRGGVEPILEKVTLISGDVSEPDLAMSEADRQLLIENVDIIIHAAATIR 133
Query: 169 FDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHN 228
FD+ ++ V LN RGT+ ++ L+K L+LF+++STAYCH EK+LEEK YPPP PH
Sbjct: 134 FDEELKKAVLLNVRGTKLIVELAKTCKKLKLFIHISTAYCHLHEKLLEEKPYPPPADPHQ 193
Query: 229 VIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGM-PCMILRPSIIIP 287
+I+ E + + + L +LL PN YA+TK L E VV E MEA + P MILRPSI+IP
Sbjct: 194 IIQAMEWMDEETVAQLTPKLLDKLPNSYAFTKALGEAVVVEAMEADLIPAMILRPSIVIP 253
Query: 288 IWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347
IW++PLPGWTDNINGPTGLLIGAGKG+IRTMYC ++ AD+LPVDV +NG+++S WN+++
Sbjct: 254 IWQEPLPGWTDNINGPTGLLIGAGKGVIRTMYCKSNSYADYLPVDVFINGIMISAWNYIT 313
Query: 348 NPGNTMRVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMTNR-------- 399
RV+N T++ + ++TW ++I+ G++I N+VPLN V+WYPGG+M +
Sbjct: 314 YGDKKSRVVNFTSSAEIKVTWLEMIDAGREIIMNRVPLNGVVWYPGGSMKHSRLYHNICA 373
Query: 400 ------------------GYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMM 441
GY+P+L RVH RI KGF++FEYYT N W FK++ +R +
Sbjct: 374 LFFHWIPAILIDILLFCLGYKPILMRVHRRISKGFEVFEYYTNNQWDFKSDIAQTVRLRL 433
Query: 442 NEKEAIRYEIAMFRDLDEAKAYFEMCIHGARQYLLGEPPETLPGAKRHVRIMYYVHVITQ 501
N +E Y++ LD K YFE CI AR Y+L E +TLP A+RH+R+MY+V VI Q
Sbjct: 434 NTRERRDYKVDAV-GLDIMK-YFEDCIKAARIYILKEYDDTLPAARRHMRVMYWVDVIAQ 491
Query: 502 VLLLGFFL-WV 511
L G L W+
Sbjct: 492 CLFWGLILYWI 502
|
Source: Ostrinia nubilalis Species: Ostrinia nubilalis Genus: Ostrinia Family: Crambidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307211548|gb|EFN87626.1| Fatty acyl-CoA reductase 1 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/479 (49%), Positives = 331/479 (69%), Gaps = 31/479 (6%)
Query: 50 HLPDRISATLEHKNIFITGASGFVGKVLLEKILRTCENVK-IYILLRPKKNKNSRERLEE 108
+ DRI T + I +TG +GF+GKV++EK+LR+ N+ IY+L+RPKK K++++R+EE
Sbjct: 9 EVTDRIMETFAGRKIMVTGGTGFLGKVMIEKLLRSLPNIAHIYMLVRPKKGKDTKQRVEE 68
Query: 109 IFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVR 168
IF SPL+E +K E+ + + E V +NGDV +P LGIS ED++ML E ++IVYH AATVR
Sbjct: 69 IFDSPLFERVKAERGIATLREMVTVVNGDVLMPGLGISPEDKKMLCENVNIVYHAAATVR 128
Query: 169 FDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHN 228
FD+ ++T V +NTRGT+ M+ L+K+M +L LFVY+STAYCH +EK+L ++TYPPP +P +
Sbjct: 129 FDEMLKTAVLMNTRGTKMMVELAKEMKNLALFVYISTAYCHLEEKILRQRTYPPPANPDS 188
Query: 229 VIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPI 288
VI+ E + + +E + ++L PN YA+TK L E ++ + +P +ILRPSIIIPI
Sbjct: 189 VIKCVEWVDEEVIEAMTDKILGSCPNTYAFTKALAENIIEDSF-PHIPSIILRPSIIIPI 247
Query: 289 WKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSN 348
WK+PLPGWTDNINGPTGLLIGAGKG+IRTMYCD AD+LPVDV VN +L+++WNFL
Sbjct: 248 WKEPLPGWTDNINGPTGLLIGAGKGVIRTMYCDDKRYADYLPVDVAVNAILIASWNFLYF 307
Query: 349 PGNTMRVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMTNR--------- 399
RV NLT++ +FQI+W +II+ G+ I + +VPLN ++WYPGG+M
Sbjct: 308 KDYEKRVYNLTSSSEFQISWGEIIDRGRRITQ-RVPLNGIVWYPGGSMKKSRLMHNICMV 366
Query: 400 -----------------GYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMMN 442
GY+P++ RV RI KGF++FEYY N W F+N + +R +N
Sbjct: 367 LFHMIPAYIIDALIFLAGYKPIMCRVQRRINKGFEVFEYYANNQWDFENSYIIDIREKLN 426
Query: 443 EKEAIRYEIAMFRDLDEAKAYFEMCIHGARQYLLGEPPETLPGAKRHVRIMYYVHVITQ 501
E +Y++ D+D AYFE CI AR Y+L EPPETLP A+RH+RIMY+V VI +
Sbjct: 427 SLEFKKYQLH-GNDMD-IDAYFETCIRAARVYILNEPPETLPAARRHLRIMYWVDVIVK 483
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332021355|gb|EGI61729.1| Putative fatty acyl-CoA reductase [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/488 (48%), Positives = 337/488 (69%), Gaps = 32/488 (6%)
Query: 52 PDRISATLEHKNIFITGASGFVGKVLLEKILRTCENVK-IYILLRPKKNKNSRERLEEIF 110
PDR++ L + I +TG +GF+GKVL+EKILR +V+ IY+L+RPKK K+ ++RL+EIF
Sbjct: 38 PDRVAEILAGRKILVTGGTGFLGKVLIEKILRCLPDVEHIYMLVRPKKGKDPKQRLDEIF 97
Query: 111 QSPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFD 170
SPL+E ++ ++ SA+ + V INGDVA+P LG+S EDR++L E ++IVYH AATVRFD
Sbjct: 98 NSPLFEKVRTQRGLSALEKAVTAINGDVALPGLGLSPEDRKILIENVNIVYHGAATVRFD 157
Query: 171 DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVI 230
+ ++ V LNTRGT+ M+ L+K+M HL +F+++STAYCH +E++L EKTYPPP PH VI
Sbjct: 158 ELLKRAVLLNTRGTKLMIELAKEMKHLLVFLHISTAYCHLEEQILREKTYPPPADPHQVI 217
Query: 231 EKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWK 290
+ E + + +E + ++L PN YA+TK L E +V E M + +P +ILRPS+IIPIWK
Sbjct: 218 KCVEWMDDDVVEAMTDKILGKLPNTYAFTKALSESLVEESM-SHIPAIILRPSVIIPIWK 276
Query: 291 DPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPG 350
+P+PGWTDNINGPTGLLIGAGKG+IRTM+C+ + AD+LPVD+ VNG+LL+TWNF+
Sbjct: 277 EPIPGWTDNINGPTGLLIGAGKGVIRTMFCNENGYADYLPVDIAVNGLLLATWNFIYFK- 335
Query: 351 NTMRVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMTNR----------- 399
+ V N+T++ + +ITW +II+ G+ I ++PLN V WYPGG++
Sbjct: 336 DEKHVFNMTSSAEIKITWAEIIKRGRKIT-ERIPLNGVAWYPGGSLKKSRLMHNICILFF 394
Query: 400 ---------------GYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMMNEK 444
GY+P++ + RI KGF++FEYY N W F+N+ + LR +N
Sbjct: 395 HMIPAYIIDAFLFLAGYKPIMCHIQRRINKGFEVFEYYANNQWDFENKYVEELREKINST 454
Query: 445 EAIRYEIAMFRDLDEAKAYFEMCIHGARQYLLGEPPETLPGAKRHVRIMYYVHVITQVLL 504
E Y++ DLD K YFE CI AR Y+L E PETLP A+RH+R+MY+V V T++L
Sbjct: 455 ECKNYQVHG-NDLDIDK-YFEDCIRAARIYILKEMPETLPAARRHLRVMYWVDVFTKILF 512
Query: 505 LGFFLWVL 512
F +++L
Sbjct: 513 FVFIIYLL 520
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 762 | ||||||
| FB|FBgn0033464 | 517 | CG1441 [Drosophila melanogaste | 0.450 | 0.663 | 0.511 | 1.5e-120 | |
| FB|FBgn0043792 | 506 | CG30427 [Drosophila melanogast | 0.437 | 0.658 | 0.397 | 3.6e-82 | |
| FB|FBgn0034145 | 625 | CG5065 [Drosophila melanogaste | 0.437 | 0.532 | 0.363 | 4e-81 | |
| FB|FBgn0039131 | 531 | CG12268 [Drosophila melanogast | 0.442 | 0.634 | 0.376 | 2.4e-79 | |
| ZFIN|ZDB-GENE-060503-367 | 515 | si:dkey-97m3.1 "si:dkey-97m3.1 | 0.446 | 0.660 | 0.373 | 3.9e-77 | |
| FB|FBgn0029821 | 494 | CG4020 [Drosophila melanogaste | 0.442 | 0.682 | 0.405 | 1.1e-76 | |
| FB|FBgn0039620 | 517 | CG1443 [Drosophila melanogaste | 0.429 | 0.632 | 0.332 | 7.9e-75 | |
| RGD|1306647 | 515 | Far1 "fatty acyl CoA reductase | 0.430 | 0.636 | 0.397 | 2.9e-74 | |
| UNIPROTKB|Q66H50 | 515 | Far1 "Fatty acyl-CoA reductase | 0.430 | 0.636 | 0.397 | 2.9e-74 | |
| UNIPROTKB|E2R4R9 | 514 | FAR1 "Uncharacterized protein" | 0.433 | 0.642 | 0.402 | 3.7e-74 |
| FB|FBgn0033464 CG1441 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 938 (335.3 bits), Expect = 1.5e-120, Sum P(3) = 1.5e-120
Identities = 177/346 (51%), Positives = 240/346 (69%)
Query: 53 DRISATLEHKNIFITGASGFVGKVLLEKILRTCENVK-IYILLRPKKNKNSRERLEEIFQ 111
DRI+ + +++FITG +GF+GKVL+EK+LR+C +K IY+L+RPKK K+ +ER+++IFQ
Sbjct: 26 DRIAECFKGRSLFITGGTGFLGKVLVEKLLRSCGGLKRIYLLIRPKKGKDPQERIKDIFQ 85
Query: 112 SPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDD 171
+ L++ +K+ + E I ++V+ I GDV P LGIS +D + L + + IVYH AATVRFD+
Sbjct: 86 NVLFDQVKQMRGEEHILQQVVAIAGDVLSPGLGISEKDLETLRQEVSIVYHCAATVRFDE 145
Query: 172 YMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIX 231
++ VF+NTRGT+ ML L+ + HL F Y STAYCH K L EK Y PP PH V+
Sbjct: 146 PLRNAVFMNTRGTKYMLELALTLKHLDFFAYCSTAYCHLHVKTLYEKPYDPPADPHKVMQ 205
Query: 232 XXXXXXXXXXXXXXXXXXQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKD 291
PN YAYTK L E +V E E +P +ILRPSI+IPIWK+
Sbjct: 206 ACEWLTDDEVATIERKVLGAIPNTYAYTKSLAEALVVEKFEE-LPAVILRPSIVIPIWKE 264
Query: 292 PLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTW-NFLSNPG 350
P+PGWTDNINGPTGLLIGAGKG+IRTMYC+ S DFLPVDV VNG+L+++W N +
Sbjct: 265 PIPGWTDNINGPTGLLIGAGKGVIRTMYCNSSGYGDFLPVDVAVNGILVASWRNITAGTD 324
Query: 351 NTMRVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAM 396
T RV ++T++ D +++W +IIE G+ + NKVPLN V WYPGG+M
Sbjct: 325 KTNRVAHMTSSNDIKVSWAEIIELGRWVIENKVPLNGVAWYPGGSM 370
|
|
| FB|FBgn0043792 CG30427 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 651 (234.2 bits), Expect = 3.6e-82, Sum P(3) = 3.6e-82
Identities = 135/340 (39%), Positives = 212/340 (62%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVK-IYILLRPKKNKNSRERLEEIFQSPLYEALKK 120
K IFITGASGF+GKVLLEK+L +C ++K + I+ RPK+ K RLEE+F+ P+++ +K
Sbjct: 15 KTIFITGASGFMGKVLLEKLLYSCHSLKEVIIICRPKRGKAPETRLEEMFKLPIFQRIKD 74
Query: 121 EQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLN 180
E+ E + ++V GDV LG+S E + ++E +IV+H+AAT++ + ++ + +N
Sbjct: 75 ERPE--MLKRVTIYQGDVTFDQLGLSGESLKHVTENTNIVFHMAATLKLEGNLRDAIDMN 132
Query: 181 TRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIXXXXXXXXXX 240
GTR LN++K+M L+ F+++STA+C+ + V+ EK Y P P +++
Sbjct: 133 LLGTRRALNVAKEMKQLEAFIHLSTAFCNCDQDVMYEKVYEFPHKPEDLMRLAEWMDVKT 192
Query: 241 XXXXXXXXXQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNI 300
+ PN Y Y+K L E +V ++ E+ MP +I RPSI+ P +PLPGW DN+
Sbjct: 193 LDAITPDLLKPHPNTYTYSKRLAELLVRDHYES-MPVIIARPSIVTPAVAEPLPGWVDNM 251
Query: 301 NGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTW-NFLSNPGNT-MRVINL 358
NGPTG+LIGAGKG+IR+M C+ ++ +PVD+ +NG++L + N L+ + V NL
Sbjct: 252 NGPTGVLIGAGKGVIRSMICNGELKSEVIPVDIAINGLILLPYHNSLAEKRPLQIPVYNL 311
Query: 359 TANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMTN 398
T + + TW I++ G+D+ K P LWYP G MT+
Sbjct: 312 TVDDAKKRTWKWIMDVGRDLGI-KYPFEVGLWYPDGNMTS 350
|
|
| FB|FBgn0034145 CG5065 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 631 (227.2 bits), Expect = 4.0e-81, Sum P(3) = 4.0e-81
Identities = 124/341 (36%), Positives = 200/341 (58%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVK-IYILLRPKKNKNSRERLEEIFQSPLYEALKK 120
+++FITG +GF+GKVL+EK+LR+C ++ IY+L+RPK+ + RL E+ +PL+E+L++
Sbjct: 126 RSVFITGGTGFMGKVLVEKLLRSCPEIRNIYLLIRPKRGQEVSARLTELLNAPLFESLRQ 185
Query: 121 EQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLN 180
E+ + KVIPI+GD+ +LGIS +D+ +L + +V+H AATV+FD+ ++ V +N
Sbjct: 186 EKPKE--LSKVIPISGDITSEELGISEKDQNLLCRNVSVVFHSAATVKFDEKLKLSVTIN 243
Query: 181 TRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIXXXXXXXXXX 240
GT+ ++ L +M+ L ++VSTAYC+ + E Y PP +P ++I
Sbjct: 244 MLGTKRLVELCHRMLSLDALIHVSTAYCNCDRTDVSEVIYAPPYNPDDIISLINWLPEDI 303
Query: 241 XXXXXXXXXQDFPNGYAYTKCLCEGVVTEYMEAG-MPCMILRPSIIIPIWKDPLPGWTDN 299
PN Y +TK L E ++ + EAG +P I+RPSI+ +P GW DN
Sbjct: 304 LDQLTPRLIGKRPNTYTFTKALAEHMLLK--EAGNLPVAIVRPSIVTASLNEPFAGWVDN 361
Query: 300 INGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359
NGPTGL+ KG+ RTM C+ + AD +PVD+++N ++ + W + N + + N
Sbjct: 362 FNGPTGLVSALAKGMFRTMMCEKNYVADMVPVDIVINLMIAAAWRTATRKSNNLLIYNCC 421
Query: 360 ANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMT-NR 399
+ I W + +++ R K PL LWYP G + NR
Sbjct: 422 TGQRNPIIWSEFVKHAMTSVR-KHPLEGCLWYPTGDLRMNR 461
|
|
| FB|FBgn0039131 CG12268 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 629 (226.5 bits), Expect = 2.4e-79, Sum P(3) = 2.4e-79
Identities = 131/348 (37%), Positives = 199/348 (57%)
Query: 61 HKNIFITGASGFVGKVLLEKILRTCENVK-IYILLRPKKNKNSRERLEEIFQSPLYEALK 119
+K I ITGA+GF+GKVL+EK+LR+C ++ IY+L+R KK + R E+ F+ ++ L
Sbjct: 21 NKTILITGATGFMGKVLVEKLLRSCADLNVIYLLIRTKKGVDPSVRKEQYFKCVIFGKLL 80
Query: 120 KEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFL 179
++ I +KV + GD+ PDLG+SA D L+ + +V+H AA VRFD ++ V +
Sbjct: 81 EKNP--GIVDKVRVVKGDLLEPDLGLSANDTNTLASNVEVVFHCAANVRFDQPLRPMVMM 138
Query: 180 NTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIXXXXXXXXX 239
N GT +L L+++M LQ V+VST+YC E VLEE+ YP P +P ++I
Sbjct: 139 NVVGTLKVLRLAEKMSQLQALVHVSTSYCQCNESVLEERAYPAPQNPFSIIEMVETMDDE 198
Query: 240 XXXXXXXXXXQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDN 299
PN YAY+K L E ++ Y +P +I RPSI+ +PLPGW +
Sbjct: 199 ALAEITPKLLNGLPNTYAYSKALSEDLICRYNNK-LPIIITRPSIVTAAIHEPLPGWIEG 257
Query: 300 INGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWN---FLSNPGNTMRVI 356
+NGPTGL+IGA +G+IR+M+C+ + +PVD +NG++L + GN +
Sbjct: 258 VNGPTGLMIGAARGVIRSMHCNPDYASTVIPVDKAINGMILCGYQRGKASQEKGNKQTGV 317
Query: 357 ---NLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMTNRGY 401
NL + ++W D IE G+ + PL+ LWYPGG++ Y
Sbjct: 318 EFCNLCISSKALMSWGDSIETGRRFFY-ETPLSFALWYPGGSIKKNYY 364
|
|
| ZFIN|ZDB-GENE-060503-367 si:dkey-97m3.1 "si:dkey-97m3.1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 618 (222.6 bits), Expect = 3.9e-77, Sum P(3) = 3.9e-77
Identities = 129/345 (37%), Positives = 198/345 (57%)
Query: 55 ISATLEHKNIFITGASGFVGKVLLEKILRTCENVK-IYILLRPKKNKNSRERLEEIFQSP 113
IS KN+ ITGA+GF+GKVL+EK+LR+C +V +YIL+RPK ++ ER++++ +
Sbjct: 4 ISEWYAGKNVLITGATGFMGKVLVEKLLRSCPDVNALYILVRPKAGQSMSERVQDMMKCK 63
Query: 114 LYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYM 173
L++ ++++ E +K+I I+ ++ P L ISA+D + L+ +HIV+H AAT+RFD+ +
Sbjct: 64 LFDRVREDNPE--FHQKIIAISSELMQPGLAISAQDVETLTSRVHIVFHCAATIRFDEPL 121
Query: 174 QTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIXXX 233
+ + LN T+ +L+L++QM LQ F+++STAY + + ++E YPPPV P +I
Sbjct: 122 KHALQLNVMATQQLLSLAQQMQQLQAFIHISTAYANCNRRHIDELIYPPPVEPRKLIDSL 181
Query: 234 XXXXXXXXXXXXXXXXQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPL 293
D+PN Y YTK L E VV + A + I+RPSI+ W++P
Sbjct: 182 EWMDESIIRDITPRLIGDWPNTYTYTKALAECVVQQE-SAKLNVGIVRPSIVGASWQEPF 240
Query: 294 PGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353
PGW DN NGP+G+ I AGKGI+RTM AD +PVDV++N L + W N T
Sbjct: 241 PGWIDNFNGPSGVFIAAGKGILRTMRASNDAVADLIPVDVVINLTLAAGWYTAVNKPKTA 300
Query: 354 RVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMTN 398
V N T W +I + + PL P +T+
Sbjct: 301 LVYNCTTGGINPFHWGEIEHHVMSTFKRN-PLEQAFRRPNANITS 344
|
|
| FB|FBgn0029821 CG4020 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 655 (235.6 bits), Expect = 1.1e-76, Sum P(2) = 1.1e-76
Identities = 142/350 (40%), Positives = 201/350 (57%)
Query: 55 ISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSP 113
I E + IF+TGASGFVGK L+EK+LR+C + +IY+L+RPKK ERL+ ++S
Sbjct: 3 IPEAFEDQEIFVTGASGFVGKALIEKLLRSCPKLGRIYVLMRPKKGHTIEERLQLQWESR 62
Query: 114 LYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYM 173
LYE L++EQ + K++ I GDV LGI + D + L ++IVYH AA+VRFDD +
Sbjct: 63 LYERLRREQPNAR--SKLVAIAGDVEQLGLGIGSADLERL-RNVNIVYHSAASVRFDDAL 119
Query: 174 QTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIXXX 233
T + LNTRGT +++ L+ + L+ FV+VST Y +P +EE+ YPP I
Sbjct: 120 STAILLNTRGTHELVKLALEWPKLKAFVHVSTTYSNPGVLEVEERVYPPLADWRTTIKLA 179
Query: 234 XXXXXXXXXXXXXXXXQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPL 293
PN Y +TK L E VV EY + +P I RPSI++ ++P+
Sbjct: 180 ETYDAEILDIFNLKYGNFQPNTYTFTKSLAEQVVNEYRDR-LPIFIFRPSIVVSTIEEPV 238
Query: 294 PGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353
PGW DN NGPTGLL+ G GI+R+ CD + ADF+P D++ ++ S + F+ +
Sbjct: 239 PGWADNFNGPTGLLVACGVGILRSQNCDPNIVADFVPADIVARTLITSVYKFMGESKSRA 298
Query: 354 R-----VINL-TANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMT 397
+ V+N TAN IT ++I+ GK R K P LW PGG MT
Sbjct: 299 KDSDLYVVNCATANIS-PITMGEVIDIGKTFIR-KNPFEKTLWLPGGGMT 346
|
|
| FB|FBgn0039620 CG1443 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 7.9e-75, Sum P(3) = 7.9e-75
Identities = 110/331 (33%), Positives = 195/331 (58%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
K +F+TG +GF GK+++EK+LR E +IY+L+R KK K++ R+E++F P++ +K+
Sbjct: 39 KGVFLTGGTGFFGKIIIEKLLRVTEVGQIYLLIRTKKGKDAFARIEDLFNDPVFAKMKQV 98
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNT 181
+ ++ I+GD ++P LGISA++R+ + E ++IV H AATVRFD+ ++ + +N
Sbjct: 99 NPKYRC--QITIISGDCSLPGLGISADERETIMENVNIVLHSAATVRFDEKLKMAIAINV 156
Query: 182 RGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIXXXXXXXXXXX 241
GT++++ L+K++++L+ V+VSTA+ H + ++E+ Y +S N
Sbjct: 157 HGTKEIIKLAKEIVNLKALVHVSTAFAHCNMRHIQERFYSGTMSGENAFKLSECLDEHTL 216
Query: 242 XXXXXXXXQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNIN 301
+ +PN Y +TK L E VV + + +P I RP I+I +++P+ GW DN+
Sbjct: 217 NTLTPTIIKGYPNTYTFTKVLAENVVQQSAQ-NLPVTIFRPGIVITTYREPVTGWIDNMY 275
Query: 302 GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361
GP G+++G G G++R D A +PVD+ VN +L S W+ N T + N +
Sbjct: 276 GPCGVIVGIGSGVLRVFTGDMDNKAHIVPVDMCVNALLASAWDIARNKYETPPIYNYVPD 335
Query: 362 KDFQITWYDIIENGKDIARNKVPLNNVLWYP 392
+ +TW +E+G + + +P+ +WYP
Sbjct: 336 AENMVTWRRYMEDGFEYGCD-IPMRKSIWYP 365
|
|
| RGD|1306647 Far1 "fatty acyl CoA reductase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 133/335 (39%), Positives = 199/335 (59%)
Query: 60 EHKNIFITGASGFVGKVLLEKILRTCENVK-IYILLRPKKNKNSRERLEEIFQSPLYEAL 118
E KNI +TGA+GF+GKVLLEK+LR+C V +Y+L+R K + +ER+EEI L++ L
Sbjct: 9 EGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEILSGKLFDRL 68
Query: 119 KKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVF 178
+ E + +K+I IN ++ P L +S ED++++ ++ ++++H AATVRF++ ++ V
Sbjct: 69 RDENPDFR--QKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNENLRDAVQ 126
Query: 179 LNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIXXXXXXXX 238
LN TR ++ L++QM +L++F++VSTAY + K ++E YPPPV P +I
Sbjct: 127 LNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLEWMDD 186
Query: 239 XXXXXXXXXXXQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTD 298
D PN Y YTK L E VV + A + I+RPSI+ WK+P PGW D
Sbjct: 187 GLVNDITPKLIGDRPNTYIYTKALAEYVVQQE-GAKLNVAIVRPSIVGASWKEPFPGWID 245
Query: 299 NINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTW-NFLSNPGNTMRVIN 357
N NGP+GL I AGKGI+RTM + AD +PVDV+VN L + W + ++ P N M V N
Sbjct: 246 NFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNRPRNIM-VYN 304
Query: 358 LTANKDFQITWYDIIENGKDIARNKVPLNNVLWYP 392
T W ++ + + PLN V +P
Sbjct: 305 CTTGSTNPFHWGEVGDYLNHSFKTN-PLNQVFRHP 338
|
|
| UNIPROTKB|Q66H50 Far1 "Fatty acyl-CoA reductase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 133/335 (39%), Positives = 199/335 (59%)
Query: 60 EHKNIFITGASGFVGKVLLEKILRTCENVK-IYILLRPKKNKNSRERLEEIFQSPLYEAL 118
E KNI +TGA+GF+GKVLLEK+LR+C V +Y+L+R K + +ER+EEI L++ L
Sbjct: 9 EGKNILLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEILSGKLFDRL 68
Query: 119 KKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVF 178
+ E + +K+I IN ++ P L +S ED++++ ++ ++++H AATVRF++ ++ V
Sbjct: 69 RDENPDFR--QKIIAINSELTQPKLALSEEDKEIIIDSTNVIFHCAATVRFNENLRDAVQ 126
Query: 179 LNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIXXXXXXXX 238
LN TR ++ L++QM +L++F++VSTAY + K ++E YPPPV P +I
Sbjct: 127 LNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLEWMDD 186
Query: 239 XXXXXXXXXXXQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTD 298
D PN Y YTK L E VV + A + I+RPSI+ WK+P PGW D
Sbjct: 187 GLVNDITPKLIGDRPNTYIYTKALAEYVVQQE-GAKLNVAIVRPSIVGASWKEPFPGWID 245
Query: 299 NINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTW-NFLSNPGNTMRVIN 357
N NGP+GL I AGKGI+RTM + AD +PVDV+VN L + W + ++ P N M V N
Sbjct: 246 NFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNRPRNIM-VYN 304
Query: 358 LTANKDFQITWYDIIENGKDIARNKVPLNNVLWYP 392
T W ++ + + PLN V +P
Sbjct: 305 CTTGSTNPFHWGEVGDYLNHSFKTN-PLNQVFRHP 338
|
|
| UNIPROTKB|E2R4R9 FAR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 630 (226.8 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
Identities = 139/345 (40%), Positives = 202/345 (58%)
Query: 60 EHKNIFITGASGFVGKVLLEKILRTCENVK-IYILLRPKKNKNSRERLEEIFQSPLYEAL 118
E KN+ +TGA+GF+GKVLLEK+LR+C V +Y+L+R K + +ER+EE+ L++ L
Sbjct: 9 EGKNVLLTGATGFLGKVLLEKLLRSCPKVNSVYVLVRQKAGQTPQERVEEVISGKLFDRL 68
Query: 119 KKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVF 178
+ E + EKVI IN ++ P L +S ED++++ ++I+I++H AATVRF++ ++ V
Sbjct: 69 RDENPDFR--EKVIAINSELTQPKLALSEEDKEIIIDSINIIFHCAATVRFNENLRDAVQ 126
Query: 179 LNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIXXXXXXXX 238
LN TR ++ L++QM +L++F++VSTAY + K ++E YPPPV P +I
Sbjct: 127 LNVIATRQLILLAQQMKNLEVFMHVSTAYAYCNRKHIDEVVYPPPVDPKKLIDSLEWMDD 186
Query: 239 XXXXXXXXXXXQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTD 298
D PN Y YTK L E VV + A + I+RPSI+ WK+P PGW D
Sbjct: 187 GLVNDITPKLIGDRPNTYIYTKALAEYVVQQE-GAKLNVAIVRPSIVGASWKEPFPGWID 245
Query: 299 NINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTW-NFLSNPGNTMRVIN 357
N NGP+GL I AGKGI+RTM + AD +PVDV+VN L + W + ++ P N M V N
Sbjct: 246 NFNGPSGLFIAAGKGILRTMRASNNALADLVPVDVVVNTSLAAAWYSGVNRPRNIM-VYN 304
Query: 358 LTANKDFQITW----YDIIENGKDIARNKVPLNNVLWYPGGAMTN 398
T W Y +I K RN PL P +T+
Sbjct: 305 CTTGSTNPFHWGEVEYHVISTFK---RN--PLEQAFRRPNVNLTS 344
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 762 | |||
| cd05236 | 320 | cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F | 1e-109 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 4e-81 | |
| PLN02996 | 491 | PLN02996, PLN02996, fatty acyl-CoA reductase | 1e-47 | |
| PLN02503 | 605 | PLN02503, PLN02503, fatty acyl-CoA reductase 2 | 9e-35 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 3e-33 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 1e-25 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 1e-24 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 7e-22 | |
| cd09071 | 92 | cd09071, FAR_C, C-terminal domain of fatty acyl Co | 2e-17 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 2e-15 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 2e-13 | |
| cd06880 | 110 | cd06880, PX_SNX22, The phosphoinositide binding Ph | 1e-12 | |
| pfam03015 | 94 | pfam03015, Sterile, Male sterility protein | 8e-11 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 9e-10 | |
| TIGR03443 | 1389 | TIGR03443, alpha_am_amid, L-aminoadipate-semialdeh | 1e-09 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 3e-08 | |
| cd06880 | 110 | cd06880, PX_SNX22, The phosphoinositide binding Ph | 2e-05 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 4e-05 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 2e-04 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 3e-04 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 3e-04 | |
| cd06885 | 104 | cd06885, PX_SNX17_31, The phosphoinositide binding | 4e-04 | |
| cd06093 | 106 | cd06093, PX_domain, The Phox Homology domain, a ph | 0.002 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 0.003 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 0.004 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 0.004 |
| >gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 334 bits (859), Expect = e-109
Identities = 126/322 (39%), Positives = 191/322 (59%), Gaps = 4/322 (1%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKK 120
K++ ITGA+GF+GKVLLEK+LR+C ++ KIY+L+R K +++ ERL E+ + L++ +
Sbjct: 1 KSVLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLRELLKDKLFDRGRN 60
Query: 121 EQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLN 180
K++PI GD++ P+LG+S ED Q L E ++I+ H AATV FD+ + + +N
Sbjct: 61 LNPLF--ESKIVPIEGDLSEPNLGLSDEDLQTLIEEVNIIIHCAATVTFDERLDEALSIN 118
Query: 181 TRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNE 240
GT +L L+K+ L+ FV+VSTAY + +++EEK YPPP P +I+ EL+ E
Sbjct: 119 VLGTLRLLELAKRCKKLKAFVHVSTAYVNGDRQLIEEKVYPPPADPEKLIDILELMDDLE 178
Query: 241 LELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNI 300
LE +LL PN Y +TK L E +V + +P +I+RPSI+ K+P PGW DN
Sbjct: 179 LERATPKLLGGHPNTYTFTKALAERLVLKERG-NLPLVIVRPSIVGATLKEPFPGWIDNF 237
Query: 301 NGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360
NGP GL + GKGI+RTM D + AD +PVDV+ N +L + + V + +
Sbjct: 238 NGPDGLFLAYGKGILRTMNADPNAVADIIPVDVVANALLAAAAYSGVRKPRELEVYHCGS 297
Query: 361 NKDFQITWYDIIENGKDIARNK 382
+ TW + E +
Sbjct: 298 SDVNPFTWGEAEELINQYLKKN 319
|
SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 259 bits (663), Expect = 4e-81
Identities = 103/275 (37%), Positives = 151/275 (54%), Gaps = 32/275 (11%)
Query: 66 ITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERL-EEIFQSPLYEALKKEQSE 124
+TGA+GF+GKVLLEK+LR+ VKIY L+R K +++ ERL +E+ + L++ LK
Sbjct: 1 LTGATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLK----- 55
Query: 125 SAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGT 184
E++IP+ GD++ P+LG+S ED Q L+E + ++ H AATV F + N GT
Sbjct: 56 --ALERIIPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNAATVNFVEPYSDLRATNVLGT 113
Query: 185 RDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELL 244
R++L L+KQM L F +VSTAY + + + EK L +
Sbjct: 114 REVLRLAKQMKKLP-FHHVSTAYVNGER-------------GGLLEEKPYKLDE-----D 154
Query: 245 KQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNIN-GP 303
+ LL PNGY +K L E +V E G+P +I RPSII + GW + + GP
Sbjct: 155 EPALLGGLPNGYTQSKWLAEQLVREAAG-GLPVVIYRPSIITG---ESRTGWINGDDFGP 210
Query: 304 TGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGV 338
GLL GAG G++ + D D +PVD + N +
Sbjct: 211 RGLLGGAGLGVLPDILGDPDARLDLVPVDYVANAI 245
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|215538 PLN02996, PLN02996, fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Score = 176 bits (447), Expect = 1e-47
Identities = 100/324 (30%), Positives = 175/324 (54%), Gaps = 53/324 (16%)
Query: 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERL-EEIFQSPLYE 116
LE+K I +TGA+GF+ K+ +EKILR NV K+Y+LLR K++ +RL +E+ L++
Sbjct: 9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFK 68
Query: 117 ALKK---EQSESAIFEKVIPINGDVAVPDLGISAED--RQMLSETIHIVYHIAATVRFDD 171
L++ E S I EKV P+ GD++ DLG+ + +M E I IV ++AAT FD+
Sbjct: 69 VLREKLGENLNSLISEKVTPVPGDISYDDLGVKDSNLREEMWKE-IDIVVNLAATTNFDE 127
Query: 172 YMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAY-CHPKEKVLEEKTYPPPVSPHNVI 230
+ +NT G ++LN +K+ + +++ ++VSTAY C K ++ EK +
Sbjct: 128 RYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVCGEKSGLILEKPFH--------- 178
Query: 231 EKAELLSKN-------ELELLKQEL----------------LQDF----------PNGYA 257
E L+ N E +L+K++L ++D PN Y
Sbjct: 179 -MGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYV 237
Query: 258 YTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRT 317
+TK + E ++ + E +P +I+RP++I +K+P PGW + + +++G GKG +
Sbjct: 238 FTKAMGEMLLGNFKE-NLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTC 296
Query: 318 MYCDYSTCADFLPVDVLVNGVLLS 341
D ++ D +P D++VN ++++
Sbjct: 297 FLADPNSVLDVIPADMVVNAMIVA 320
|
Length = 491 |
| >gnl|CDD|215279 PLN02503, PLN02503, fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 9e-35
Identities = 100/326 (30%), Positives = 166/326 (50%), Gaps = 43/326 (13%)
Query: 55 ISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE-EIFQS 112
I+ L KN ITGA+GF+ KVL+EKILRT +V KIY+L++ K + + ERL+ E+ +
Sbjct: 113 IAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDA 172
Query: 113 PLYEALKK---EQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRF 169
L++ L++ + +S + K++P+ G+V +LG+ + +++ + ++ + AA F
Sbjct: 173 ELFKCLQETHGKSYQSFMLSKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTF 232
Query: 170 DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCH-PKEKVLEEKTY-------- 220
D+ + +NTRG +++ +K+ L+LF+ VSTAY + ++ + EK +
Sbjct: 233 DERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNGQRQGRIMEKPFRMGDCIAR 292
Query: 221 ---PPPVSPHNV----IE---KAELLSKNE---------------LELLKQELLQDFPNG 255
PHN IE K L SK LE K QD
Sbjct: 293 ELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQD---T 349
Query: 256 YAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGII 315
Y +TK + E V+ M +P +I+RPS+I WKDP PGW + +++ GKG +
Sbjct: 350 YVFTKAMGEMVINS-MRGDIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQL 408
Query: 316 RTMYCDYSTCADFLPVDVLVNGVLLS 341
D + D +P D++VN L +
Sbjct: 409 TGFLADPNGVLDVVPADMVVNATLAA 434
|
Length = 605 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 3e-33
Identities = 75/338 (22%), Positives = 135/338 (39%), Gaps = 58/338 (17%)
Query: 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQ 122
+ +TGA+GF+G LL ++L+ KIY L+R K + + ERL + +
Sbjct: 1 TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKE-----YGLNL 55
Query: 123 SESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTR 182
+ ++ + GD++ P+LG+S +D Q L+E + ++ H A V + + N
Sbjct: 56 WDELELSRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIHNGANVNWVYPYEELKPANVL 115
Query: 183 GTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELE 242
GT+++L L+ L+ +VST + AE + + E
Sbjct: 116 GTKELLKLAATG-KLKPLHFVSTLS----------------------VFSAEEYNALDDE 152
Query: 243 LLKQEL--LQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNI 300
L PNGY +K + E ++ E G+P I+RP I D+
Sbjct: 153 ESDDMLESQNGLPNGYIQSKWVAEKLLREAANRGLPVAIIRPGNIFG----------DSE 202
Query: 301 NGPT------GLLIGAGKGIIRT-MYCDYSTCADFLPVDVLV-NGVLLSTWNFLSNPGNT 352
G L+ KG ++ +Y D PVD + V L+ N N
Sbjct: 203 TGIGNTDDFFWRLL---KGCLQLGIYPISGAPLDLSPVDWVARAIVKLA-----LNESNE 254
Query: 353 MRVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLW 390
+ +L I+ D+++ ++ + ++ W
Sbjct: 255 FSIYHLLNPP--LISLNDLLDALEEKGYSIKEVSYEEW 290
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 74/304 (24%), Positives = 125/304 (41%), Gaps = 60/304 (19%)
Query: 64 IFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQS 123
+F+TG +GF+G+ L++++L K+ +L+R + + ER+EE
Sbjct: 1 VFVTGGTGFLGRHLVKRLLEN--GFKVLVLVRSESLGEAHERIEE--------------- 43
Query: 124 ESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRF----DDYMQTYVFL 179
++V + GD+ P+LG+SA + L+ + V H AA+ F +D +T
Sbjct: 44 AGLEADRVRVLEGDLTQPNLGLSAAASRELAGKVDHVIHCAASYDFQAPNEDAWRT---- 99
Query: 180 NTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKN 239
N GT +L L+ + + +Q F YVSTAY +
Sbjct: 100 NIDGTEHVLELAAR-LDIQRFHYVSTAYV------------AGNREGNI----------R 136
Query: 240 ELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDN 299
E EL Q+F N Y +K E +V +P + RPSI + D G +
Sbjct: 137 ETELNPG---QNFKNPYEQSKAEAEQLVRAAATQ-IPLTVYRPSI---VVGDSKTGRIEK 189
Query: 300 INGPTGLLIG-AGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358
I+G LL A G M + + +PVD + + ++ P ++ +L
Sbjct: 190 IDGLYELLNLLAKLGRWLPMPGNKGARLNLVPVDYVADAIVY----LSKKPEANGQIFHL 245
Query: 359 TANK 362
T
Sbjct: 246 TDPT 249
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-24
Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 35/227 (15%)
Query: 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQ 122
+ +TGA+GF+G LLE++LR K+ L+R +++ ERL E +S L
Sbjct: 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRS---YRL---W 54
Query: 123 SESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFL--- 179
E E++ + GD++ P LG+S + + L+E + + H A V +++ Y L
Sbjct: 55 HEDLARERIEVVAGDLSEPRLGLSDAEWERLAENVDTIVHNGALV---NWVYPYSELRGA 111
Query: 180 NTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKN 239
N GTR++L L+ + YVST V + V E ++
Sbjct: 112 NVLGTREVLRLA-ASGRAKPLHYVSTI------SVG------AAIDLSTVTEDDATVTP- 157
Query: 240 ELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIII 286
GYA +K + E +V E + G+P I+RP I+
Sbjct: 158 ---------PPGLAGGYAQSKWVAELLVREASDRGLPVTIVRPGRIL 195
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 7e-22
Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 33/228 (14%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
+N+ +TGA+GF+G LL ++L + K+ L+R + ++ + RLE+ F LY E
Sbjct: 1 RNVLLTGATGFLGAYLLLELLDR-SDAKVICLVRAQSDEAALARLEKTF--DLY-RHWDE 56
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFL-- 179
S ++V + GD+A PDLG+S Q L+E + ++ H AA V +++ Y L
Sbjct: 57 LSA----DRVEVVAGDLAEPDLGLSERTWQELAENVDLIIHNAALV---NHVFPYSELRG 109
Query: 180 -NTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSK 238
N GT ++L L+ + YVS+ V E N + +S
Sbjct: 110 ANVLGTAEVLRLA-ATGKPKPLHYVSSI------SVGE------TEYYSNFTVDFDEISP 156
Query: 239 NELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIII 286
+ + Q GY +K + E +V E + G+P I RP I
Sbjct: 157 T------RNVGQGLAGGYGRSKWVAEKLVREAGDRGLPVTIFRPGYIT 198
|
Length = 382 |
| >gnl|CDD|176924 cd09071, FAR_C, C-terminal domain of fatty acyl CoA reductases | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 2e-17
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 399 RGYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMMNEKEAIRYEIAMFRDLD 458
G +P L +++ +I K D+ EY+T N W F N+N AL ++E++ + + R +D
Sbjct: 17 LGRKPRLLKLYRKIHKLLDLLEYFTTNEWRFDNDNTRALWERLSEEDRELFNFDI-RSID 75
Query: 459 EAKAYFEMCIHGARQYLL 476
YFE I G R+YLL
Sbjct: 76 WDD-YFENYIPGLRKYLL 92
|
C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear. Length = 92 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 2e-15
Identities = 62/251 (24%), Positives = 103/251 (41%), Gaps = 69/251 (27%)
Query: 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQ 122
F+TG +GF+G+ L+ ++L +++L+R + S RLE AL
Sbjct: 2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQ----SLSRLE---------ALAAYW 48
Query: 123 SESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAA----TVRFDDYMQTYVF 178
++V+P+ GD+ P LG+S D L + H V H+AA T +
Sbjct: 49 GA----DRVVPLVGDLTEPGLGLSEADIAELGDIDH-VVHLAAIYDLTADEEAQRAA--- 100
Query: 179 LNTRGTRDMLNLSKQMIHLQLFVYVST---AYCHP---KEKVLEEKTYPPPVSPHNVIEK 232
N GTR+++ L+++ + F +VS+ A + +E +E
Sbjct: 101 -NVDGTRNVVELAER-LQAATFHHVSSIAVAGDYEGVFREDDFDEG-------------- 144
Query: 233 AELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDP 292
Q P Y TK E +V E E G+P + RP++++ D
Sbjct: 145 -----------------QGLPTPYHRTKFEAEKLVRE--ECGLPWRVYRPAVVV---GDS 182
Query: 293 LPGWTDNINGP 303
G D I+GP
Sbjct: 183 RTGEMDKIDGP 193
|
Length = 657 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.5 bits (175), Expect = 2e-13
Identities = 67/336 (19%), Positives = 118/336 (35%), Gaps = 86/336 (25%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
I +TG +GF+G L+E++L +V+ LR +
Sbjct: 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL------------------- 41
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYM----QTYV 177
V + D+ DL ++ V H+AA D ++
Sbjct: 42 -------SGVEFVVLDLTDRDL-----VDELAKGVPDAVIHLAAQSSVPDSNASDPAEFL 89
Query: 178 FLNTRGTRDMLNLSKQMIHLQLFVYVSTAYC----HPKEKVLEEKTYPPPVSPHNVIEKA 233
+N GT ++L ++ ++ FV+ S+ P + E+ P P++P
Sbjct: 90 DVNVDGTLNLLEAARAA-GVKRFVFASSVSVVYGDPPPLPIDEDLGPPRPLNP------- 141
Query: 234 ELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDP 292
Y +K E ++ Y G+P +ILRP +
Sbjct: 142 ----------------------YGVSKLAAEQLLRAYARLYGLPVVILRPFNVYG----- 174
Query: 293 LPGWTDNING--PTGLLIGAGKGI-IRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNP 349
PG +++ + + KG I + D S DF+ VD + + +LL L NP
Sbjct: 175 -PGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLL----ALENP 229
Query: 350 GNTMRVINLTANKDFQITWYDIIENGKDIARNKVPL 385
V N+ + IT ++ E + +K PL
Sbjct: 230 DG--GVFNIGSGTAE-ITVRELAEAVAEAVGSKAPL 262
|
Length = 314 |
| >gnl|CDD|132790 cd06880, PX_SNX22, The phosphoinositide binding Phox Homology domain of Sorting Nexin 22 | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 1e-12
Identities = 27/59 (45%), Positives = 35/59 (59%)
Query: 638 KTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGPSRNQVLAFLGVNSKNSQP 696
K TP FPPK++R+ PKVL++RR LE YL+ + K Q+L FLGV S P
Sbjct: 50 KKSIKTPDFPPKRVRNWNPKVLEQRRQGLEAYLQGLLKINELPKQLLDFLGVRHFPSLP 108
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known. Length = 110 |
| >gnl|CDD|111859 pfam03015, Sterile, Male sterility protein | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 8e-11
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 400 GYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMMNEKEAIRYEIAMFRDLDE 459
G +P L +++ +I KG ++ + ++ N W F N+N LR M+E++ + M LD
Sbjct: 18 GQKPRLVKLYRKIHKGLEVLQPFSLNEWIFDNKNTRELREKMSEEDKKLFNFDM-ESLD- 75
Query: 460 AKAYFEMCIHGARQYLLGE 478
YF I G R+YLL E
Sbjct: 76 WDEYFRNAIRGIRKYLLKE 94
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 94 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 9e-10
Identities = 44/193 (22%), Positives = 71/193 (36%), Gaps = 51/193 (26%)
Query: 159 IVYHIAATVRFDDYMQ--TYVFL-NTRGTRDMLNLSKQMIHLQLFVYVSTA--YCHPKEK 213
+V H+AA V F N GT ++L +++ ++ FVY S+A Y P+
Sbjct: 33 VVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKA-GVKRFVYASSASVYGSPEGL 91
Query: 214 VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA 273
EE+T P P+SP Y +K E ++ Y E+
Sbjct: 92 PEEEETPPRPLSP-----------------------------YGVSKLAAEHLLRSYGES 122
Query: 274 -GMPCMILRPSIII-----PIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCAD 327
G+P +ILR + + P + + L + G R D
Sbjct: 123 YGLPVVILRLANVYGPGQRPRLDGVVNDFIRRALEGKPLTVFGGGNQTR----------D 172
Query: 328 FLPVDVLVNGVLL 340
F+ VD +V +L
Sbjct: 173 FIHVDDVVRAILH 185
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-09
Identities = 59/253 (23%), Positives = 109/253 (43%), Gaps = 38/253 (15%)
Query: 40 IVKAIPKKFKHLPDRISATLEH-KNIFITGASGFVGKVLLEKIL--RTCENVKIYILLRP 96
+V ++PK + P R +F+TGA+GF+G +L +L R+ N K++ +R
Sbjct: 952 LVDSLPKSY---PSRKELDASTPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRA 1008
Query: 97 KKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSET 156
K + ERL + + Y +E + ++ + GD++ G+S E L+
Sbjct: 1009 KSEEAGLERLRKTGTT--YGIWDEEWAS-----RIEVVLGDLSKEKFGLSDEKWSDLTNE 1061
Query: 157 IHIVYHIAATVRFDDYMQTYVFL---NTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK 213
+ ++ H A V ++ Y L N GT ++LNL + + F +VS+
Sbjct: 1062 VDVIIHNGALVH---WVYPYSKLRDANVIGTINVLNLCAEG-KAKQFSFVSST------S 1111
Query: 214 VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQ----DFPNGYAYTKCLCEGVVTE 269
L+ + Y V EL+ + + + L GY +K + E ++ E
Sbjct: 1112 ALDTEYY--------VNLSDELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIRE 1163
Query: 270 YMEAGMPCMILRP 282
+ G+ I+RP
Sbjct: 1164 AGKRGLRGCIVRP 1176
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. Length = 1389 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 48/232 (20%), Positives = 81/232 (34%), Gaps = 73/232 (31%)
Query: 64 IFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQS 123
I +TGA+GF+G L+ +L V+ L+R + P+
Sbjct: 1 ILVTGATGFLGSNLVRALLAQGYRVR--ALVRSG------SDAVLLDGLPV--------- 43
Query: 124 ESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRF-----DDYMQTYVF 178
E V GD+ ++ M + V+H+AA + +T
Sbjct: 44 -----EVVE---GDLTDA----ASLAAAM--KGCDRVFHLAAFTSLWAKDRKELYRT--- 86
Query: 179 LNTRGTRDMLN--LSKQMIHLQLFVYVST--AYCHPKEKVLEEKTYPPPVSPHNVIEKAE 234
N GTR++L+ L ++ V+ S+ A P + ++E T
Sbjct: 87 -NVEGTRNVLDAALEAG---VRRVVHTSSIAALGGPPDGRIDETTPWNE----------- 131
Query: 235 LLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIII 286
+ FPN Y +K L E V E G+ +I+ PS +
Sbjct: 132 ---------------RPFPNDYYRSKLLAELEVLEAAAEGLDVVIVNPSAVF 168
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|132790 cd06880, PX_SNX22, The phosphoinositide binding Phox Homology domain of Sorting Nexin 22 | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 520 NCISVSGYRLI--ECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSE 565
+S+ YRL E EKPY V+ I V + + + VEKRYSE + H +
Sbjct: 1 IEVSIPSYRLEVDESEKPYTVFTIEVLVNGRRHTVEKRYSEFHALHKK 48
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known. Length = 110 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 43/226 (19%), Positives = 81/226 (35%), Gaps = 66/226 (29%)
Query: 64 IFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQS 123
I +TG +GF+G L+ ++L+ E ++ +L R +++++ + L +
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQ--EGYEVIVLGRRRRSESLNTGRIRFHEGDL---TDPDAL 55
Query: 124 ESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQT---YVFLN 180
E + +V P V H+AA + ++ N
Sbjct: 56 E-RLLAEVQP------------------------DAVIHLAAQSGVGASFEDPADFIRAN 90
Query: 181 TRGTRDMLNLSKQMIHLQLFVYVSTA--YCHPKEKVLEEKTYPPPVSPHNVIEKAELLSK 238
GT +L +++ ++ FV+ S++ Y + + E T P+SP
Sbjct: 91 VLGTLRLLEAARRA-GVKRFVFASSSEVYGDVADPPITEDTPLGPLSP------------ 137
Query: 239 NELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPS 283
YA K E +V Y A G+ +ILR
Sbjct: 138 -----------------YAAAKLAAERLVEAYARAYGLRAVILRLF 166
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 47/172 (27%), Positives = 69/172 (40%), Gaps = 43/172 (25%)
Query: 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQ 122
+ ITGASGFVG+ L E++L N ++ IL+ SP +
Sbjct: 2 KVLITGASGFVGQRLAERLLSDVPNERL-ILID--------------VVSPKAPSGAPR- 45
Query: 123 SESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVR------FDDYMQTY 176
V I GD+AVP A + + +V+H+AA V FD +
Sbjct: 46 --------VTQIAGDLAVP-----ALIEALANGRPDVVFHLAAIVSGGAEADFDLGYRV- 91
Query: 177 VFLNTRGTRDMLN-LSKQMIHLQLFVYVST--AYCHPKEKVLEEKTYPPPVS 225
N GTR++L L K + FV+ S+ Y P + + T P S
Sbjct: 92 ---NVDGTRNLLEALRKNGPKPR-FVFTSSLAVYGLPLPNPVTDHTALDPAS 139
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 3e-04
Identities = 59/229 (25%), Positives = 96/229 (41%), Gaps = 49/229 (21%)
Query: 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYE 116
AT E KNI ITGA+GF+ + +++R + KI +L + N + L SP ++
Sbjct: 2 ATYEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKN-LNPSKSSPNFK 60
Query: 117 ALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDD-YMQT 175
+K GD+A DL + +++E I + H AA D+ + +
Sbjct: 61 FVK----------------GDIASADL----VNYLLITEGIDTIMHFAAQTHVDNSFGNS 100
Query: 176 YVFL--NTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKA 233
+ F N GT +L K ++ F++VST ++V E V H E +
Sbjct: 101 FEFTKNNIYGTHVLLEACKVTGQIRRFIHVST------DEVYGETDEDADVGNH---EAS 151
Query: 234 ELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILR 281
+LL N Y+ TK E +V Y + G+P + R
Sbjct: 152 QLLPTNP---------------YSATKAGAEMLVMAYGRSYGLPVITTR 185
|
Length = 668 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 20/104 (19%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
K I +TG +G +G L+ +IL+ K+ + + ++ L+E L +E
Sbjct: 3 KTILVTGGAGSIGSELVRQILKFGPK-KLIVF--------------DRDENKLHE-LVRE 46
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAA 165
+K+ I GDV + R IV+H AA
Sbjct: 47 LRSRFPHDKLRFIIGDVRDKER----LRRAFKERGPDIVFHAAA 86
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|132795 cd06885, PX_SNX17_31, The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31 | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 636 QNKTKFS---TPSFPPKKIRSNQPKVLDERRHLLEIYLKEM 673
Q K +F P FPPKK+ P L+ERR LE YL+ +
Sbjct: 44 QLKKEFGNRKLPPFPPKKLLPLTPAQLEERRLQLEKYLQAV 84
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some members of the low-density lipoprotein receptor (LDLR) family such as LDLR, VLDLR, ApoER2, and others, regulating their endocytosis. It also binds P-selectin and may regulate its lysosomal degradation. SNX17 is highly expressed in neurons. It binds amyloid precursor protein (APP) and may be involved in its intracellular trafficking and processing to amyloid beta peptide, which plays a central role in the pathogenesis of Alzheimer's disease. The biological function of SNX31 is unknown. Length = 104 |
| >gnl|CDD|132768 cd06093, PX_domain, The Phox Homology domain, a phosphoinositide binding module | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.002
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 644 PSFPPKKIRSNQ-PKVLDERRHLLEIYLKEMFKFGPSRN--QVLAFL 687
P PPKK+ N P+ ++ERR LE YL+ + RN ++ FL
Sbjct: 58 PPLPPKKLFGNLDPEFIEERRKQLEQYLQSLLNHPELRNSEELKEFL 104
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting. Length = 106 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 30/146 (20%)
Query: 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQ 122
N+ +TGA GF+G L E++LR E ++ L N + L
Sbjct: 1 NVLVTGADGFIGSHLTERLLR--EGHEVRAL--DIYNSFNSWGLL--------------- 41
Query: 123 SESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQ---TYVFL 179
++A+ ++ I+GDV L + +V+H+AA + +YV
Sbjct: 42 -DNAVHDRFHFISGDVRDASEVEY------LVKKCDVVFHLAALIAIPYSYTAPLSYVET 94
Query: 180 NTRGTRDMLNLSKQMIHLQLFVYVST 205
N GT ++L + + + + V+ ST
Sbjct: 95 NVFGTLNVLEAACVL-YRKRVVHTST 119
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.004
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 39/172 (22%)
Query: 64 IFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQS 123
I I GA+GF+G+ L ++L + ++ +L+R + +RL + Q P+
Sbjct: 1 ILILGATGFIGRALARELLE--QGHEVTLLVR------NTKRLSKEDQEPVAV------- 45
Query: 124 ESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRG 183
+ GD+ D A +V H+A R + ++ G
Sbjct: 46 ----------VEGDLRDLDSLSDAVQGV------DVVIHLAGAPRDTRD---FCEVDVEG 86
Query: 184 TRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAEL 235
TR++L +K+ ++ F+++S+ + L E+T P P SP+ KA+
Sbjct: 87 TRNVLEAAKE-AGVKHFIFISSLG-AYGD--LHEETEPSPSSPYLA-VKAKT 133
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 53/224 (23%), Positives = 86/224 (38%), Gaps = 54/224 (24%)
Query: 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQ 122
++ +TG SGF G+ L++++L E Y+ R +I +P EAL Q
Sbjct: 1 SVLVTGGSGFFGERLVKQLL---ERGGTYV------------RSFDI--APPGEALSAWQ 43
Query: 123 SESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTR 182
+ F + GD+ + A V+H AA V Y +N
Sbjct: 44 HPNIEF-----LKGDITDRNDVEQALSG------ADCVFHTAAIVPLAGPRDLYWEVNVG 92
Query: 183 GTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELE 242
GT+++L+ ++ +Q FVY S++ +VI + + N E
Sbjct: 93 GTQNVLDACQRC-GVQKFVYTSSS---------------------SVIFGGQNI-HNGDE 129
Query: 243 LLKQELLQDFPNGYAYTKCLCEGVVTEYM-EAGMPCMILRPSII 285
L L YA TK + E +V E + LRP+ I
Sbjct: 130 TLPYPPLDSDM--YAETKAIAEIIVLEANGRDDLLTCALRPAGI 171
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 762 | |||
| KOG1221|consensus | 467 | 100.0 | ||
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 100.0 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 99.98 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.97 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 99.97 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 99.97 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.97 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 99.97 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.97 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.97 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 99.97 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.97 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.97 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.97 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.97 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.97 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.97 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.97 | |
| KOG1502|consensus | 327 | 99.96 | ||
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.96 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.96 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.96 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.96 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.96 | |
| KOG0747|consensus | 331 | 99.96 | ||
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.96 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.96 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.96 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 99.96 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.96 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 99.95 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.95 | |
| KOG1429|consensus | 350 | 99.95 | ||
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.95 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 99.95 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.95 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.94 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 99.94 | |
| KOG1430|consensus | 361 | 99.94 | ||
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.94 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 99.94 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.94 | |
| KOG1371|consensus | 343 | 99.94 | ||
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.93 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.93 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.93 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 99.93 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.91 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.91 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.91 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 99.91 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 99.9 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.9 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 99.89 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.89 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.88 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.83 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.8 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.79 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.79 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.79 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.79 | |
| cd06880 | 110 | PX_SNX22 The phosphoinositide binding Phox Homolog | 99.78 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.78 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.77 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.75 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.75 | |
| KOG1431|consensus | 315 | 99.74 | ||
| KOG2865|consensus | 391 | 99.74 | ||
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.73 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.73 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.72 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.72 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.72 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.72 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.72 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.7 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.69 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.68 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.68 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.67 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.67 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.66 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.66 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.66 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.65 | |
| PF03015 | 94 | Sterile: Male sterility protein; InterPro: IPR0042 | 99.65 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.65 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.65 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.65 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.63 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.63 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.63 | |
| cd06875 | 116 | PX_IRAS The phosphoinositide binding Phox Homology | 99.63 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.62 | |
| cd06870 | 109 | PX_CISK The phosphoinositide binding Phox Homology | 99.62 | |
| cd07276 | 110 | PX_SNX16 The phosphoinositide binding Phox Homolog | 99.61 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.61 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.61 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.61 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.61 | |
| KOG1372|consensus | 376 | 99.61 | ||
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.61 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.59 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.59 | |
| cd06877 | 119 | PX_SNX14 The phosphoinositide binding Phox Homolog | 99.59 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.59 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.59 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.58 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.58 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.58 | |
| cd06872 | 107 | PX_SNX19_like_plant The phosphoinositide binding P | 99.58 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.58 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.57 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.56 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.56 | |
| cd06897 | 108 | PX_SNARE The phosphoinositide binding Phox Homolog | 99.56 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.56 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.56 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.55 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.55 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.55 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.55 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.55 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.55 | |
| cd09071 | 92 | FAR_C C-terminal domain of fatty acyl CoA reductas | 99.54 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.54 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.54 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.54 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.54 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.54 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.54 | |
| cd06886 | 106 | PX_SNX27 The phosphoinositide binding Phox Homolog | 99.53 | |
| cd06878 | 127 | PX_SNX25 The phosphoinositide binding Phox Homolog | 99.53 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.53 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.53 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.53 | |
| cd07277 | 118 | PX_RUN The phosphoinositide binding Phox Homology | 99.53 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.52 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.52 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.52 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.52 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.52 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.52 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.52 | |
| cd06885 | 104 | PX_SNX17_31 The phosphoinositide binding Phox Homo | 99.52 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.51 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.51 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.51 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.51 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.51 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.51 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.51 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.51 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.5 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.5 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.5 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.5 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.5 | |
| cd06868 | 120 | PX_HS1BP3 The phosphoinositide binding Phox Homolo | 99.5 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.49 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.49 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.49 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.49 | |
| cd07301 | 112 | PX_SNX21 The phosphoinositide binding Phox Homolog | 99.49 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.48 | |
| cd07280 | 120 | PX_YPT35 The phosphoinositide binding Phox Homolog | 99.47 | |
| cd07300 | 114 | PX_SNX20 The phosphoinositide binding Phox Homolog | 99.47 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.47 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.47 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.47 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.46 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.46 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.46 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.46 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.46 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.46 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.46 | |
| cd06883 | 109 | PX_PI3K_C2 The phosphoinositide binding Phox Homol | 99.46 | |
| cd06873 | 120 | PX_SNX13 The phosphoinositide binding Phox Homolog | 99.46 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.46 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.45 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.45 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.45 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.45 | |
| cd06882 | 123 | PX_p40phox The phosphoinositide binding Phox Homol | 99.45 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.44 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.44 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.44 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.43 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.43 | |
| cd06881 | 117 | PX_SNX15_like The phosphoinositide binding Phox Ho | 99.43 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.43 | |
| cd06874 | 127 | PX_KIF16B_SNX23 The phosphoinositide binding Phox | 99.43 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.42 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.42 | |
| cd06876 | 133 | PX_MDM1p The phosphoinositide binding Phox Homolog | 99.42 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.41 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.41 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.41 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.41 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.41 | |
| cd06864 | 129 | PX_SNX4 The phosphoinositide binding Phox Homology | 99.41 | |
| cd07287 | 118 | PX_RPK118_like The phosphoinositide binding Phox H | 99.4 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.4 | |
| cd07279 | 112 | PX_SNX20_21_like The phosphoinositide binding Phox | 99.4 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.39 | |
| cd06887 | 118 | PX_p47phox The phosphoinositide binding Phox Homol | 99.39 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.39 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.39 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.39 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.38 | |
| cd06898 | 113 | PX_SNX10 The phosphoinositide binding Phox Homolog | 99.38 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.38 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.38 | |
| cd06867 | 112 | PX_SNX41_42 The phosphoinositide binding Phox Homo | 99.38 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.38 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.38 | |
| cd07281 | 124 | PX_SNX1 The phosphoinositide binding Phox Homology | 99.37 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.37 | |
| cd06895 | 140 | PX_PLD The phosphoinositide binding Phox Homology | 99.37 | |
| cd06884 | 111 | PX_PI3K_C2_68D The phosphoinositide binding Phox H | 99.37 | |
| cd06879 | 138 | PX_UP1_plant The phosphoinositide binding Phox Hom | 99.37 | |
| cd06893 | 132 | PX_SNX19 The phosphoinositide binding Phox Homolog | 99.37 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.36 | |
| cd06871 | 120 | PX_MONaKA The phosphoinositide binding Phox Homolo | 99.36 | |
| cd06865 | 120 | PX_SNX_like The phosphoinositide binding Phox Homo | 99.36 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.35 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.35 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.34 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.34 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.34 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.34 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.34 | |
| cd06861 | 112 | PX_Vps5p The phosphoinositide binding Phox Homolog | 99.33 | |
| cd07282 | 124 | PX_SNX2 The phosphoinositide binding Phox Homology | 99.33 | |
| KOG1259|consensus | 490 | 99.32 | ||
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.32 | |
| KOG1205|consensus | 282 | 99.32 | ||
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.32 | |
| cd06862 | 125 | PX_SNX9_18_like The phosphoinositide binding Phox | 99.31 | |
| cd06894 | 123 | PX_SNX3_like The phosphoinositide binding Phox Hom | 99.31 | |
| cd07295 | 116 | PX_Grd19 The phosphoinositide binding Phox Homolog | 99.3 | |
| KOG2774|consensus | 366 | 99.3 | ||
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.3 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.3 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.3 | |
| cd06863 | 118 | PX_Atg24p The phosphoinositide binding Phox Homolo | 99.3 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.3 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.29 | |
| cd06866 | 105 | PX_SNX8_Mvp1p_like The phosphoinositide binding Ph | 99.29 | |
| cd07293 | 123 | PX_SNX3 The phosphoinositide binding Phox Homology | 99.28 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.28 | |
| cd07289 | 109 | PX_PI3K_C2_alpha The phosphoinositide binding Phox | 99.27 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.27 | |
| cd07288 | 118 | PX_SNX15 The phosphoinositide binding Phox Homolog | 99.27 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.27 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.26 | |
| cd06859 | 114 | PX_SNX1_2_like The phosphoinositide binding Phox H | 99.25 | |
| cd06869 | 119 | PX_UP2_fungi The phosphoinositide binding Phox Hom | 99.24 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.24 | |
| cd06860 | 116 | PX_SNX7_30_like The phosphoinositide binding Phox | 99.24 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.24 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.22 | |
| cd07290 | 109 | PX_PI3K_C2_beta The phosphoinositide binding Phox | 99.22 | |
| cd07294 | 132 | PX_SNX12 The phosphoinositide binding Phox Homolog | 99.22 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.21 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.21 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.21 | |
| smart00312 | 105 | PX PhoX homologous domain, present in p47phox and | 99.21 | |
| KOG4039|consensus | 238 | 99.2 | ||
| cd06093 | 106 | PX_domain The Phox Homology domain, a phosphoinosi | 99.2 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.2 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.19 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.18 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.16 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.15 | |
| KOG1201|consensus | 300 | 99.11 | ||
| PRK05599 | 246 | hypothetical protein; Provisional | 99.11 | |
| PF00787 | 113 | PX: PX domain; InterPro: IPR001683 The PX (phox) d | 99.1 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.1 | |
| cd06890 | 112 | PX_Bem1p The phosphoinositide binding Phox Homolog | 99.09 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.09 | |
| cd07296 | 135 | PX_PLD1 The phosphoinositide binding Phox Homology | 99.08 | |
| cd06888 | 119 | PX_FISH The phosphoinositide binding Phox Homology | 99.08 | |
| cd07283 | 116 | PX_SNX30 The phosphoinositide binding Phox Homolog | 99.07 | |
| KOG4288|consensus | 283 | 99.03 | ||
| cd07286 | 127 | PX_SNX18 The phosphoinositide binding Phox Homolog | 99.03 | |
| KOG1203|consensus | 411 | 99.03 | ||
| PLN00015 | 308 | protochlorophyllide reductase | 99.0 | |
| cd07284 | 116 | PX_SNX7 The phosphoinositide binding Phox Homology | 98.99 | |
| KOG1208|consensus | 314 | 98.97 | ||
| cd07285 | 126 | PX_SNX9 The phosphoinositide binding Phox Homology | 98.93 | |
| KOG1200|consensus | 256 | 98.9 | ||
| KOG0725|consensus | 270 | 98.87 | ||
| KOG4169|consensus | 261 | 98.85 | ||
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 98.84 | |
| KOG1611|consensus | 249 | 98.82 | ||
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 98.81 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 98.77 | |
| KOG1610|consensus | 322 | 98.75 | ||
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 98.73 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 98.73 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 98.67 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 98.64 | |
| KOG2527|consensus | 144 | 98.62 | ||
| KOG1207|consensus | 245 | 98.6 | ||
| KOG3019|consensus | 315 | 98.52 | ||
| KOG1210|consensus | 331 | 98.48 | ||
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 98.48 | |
| PLN00106 | 323 | malate dehydrogenase | 98.46 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 98.41 | |
| cd06891 | 140 | PX_Vps17p The phosphoinositide binding Phox Homolo | 98.38 | |
| KOG3784|consensus | 407 | 98.38 | ||
| KOG1209|consensus | 289 | 98.36 | ||
| cd06889 | 121 | PX_NoxO1 The phosphoinositide binding Phox Homolog | 98.25 | |
| KOG1014|consensus | 312 | 98.24 | ||
| PRK06720 | 169 | hypothetical protein; Provisional | 98.14 | |
| cd07297 | 130 | PX_PLD2 The phosphoinositide binding Phox Homology | 98.12 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.07 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.05 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.04 | |
| KOG1204|consensus | 253 | 98.03 | ||
| cd06896 | 101 | PX_PI3K_C2_gamma The phosphoinositide binding Phox | 97.95 | |
| KOG1199|consensus | 260 | 97.85 | ||
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 97.78 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 97.69 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.61 | |
| cd06892 | 141 | PX_SNX5_like The phosphoinositide binding Phox Hom | 97.53 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.48 | |
| KOG1478|consensus | 341 | 97.42 | ||
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.31 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.29 | |
| cd07291 | 141 | PX_SNX5 The phosphoinositide binding Phox Homology | 97.29 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.26 | |
| KOG2101|consensus | 362 | 97.24 | ||
| KOG2273|consensus | 503 | 97.21 | ||
| cd07292 | 141 | PX_SNX6 The phosphoinositide binding Phox Homology | 97.19 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.19 | |
| KOG2733|consensus | 423 | 97.13 | ||
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 97.07 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.05 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.01 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.78 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 96.75 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 96.64 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.53 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 96.52 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.51 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 96.51 | |
| KOG1202|consensus | 2376 | 96.49 | ||
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.23 | |
| COG5391 | 524 | Phox homology (PX) domain protein [Intracellular t | 96.07 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 95.91 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.9 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 95.89 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 95.88 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 95.87 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 95.65 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.51 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 95.42 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 95.42 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 95.41 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 95.39 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.33 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 95.32 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.29 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 95.26 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 95.21 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.19 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.0 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 94.99 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 94.8 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 94.65 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 94.59 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 94.52 | |
| cd07298 | 115 | PX_RICS The phosphoinositide binding Phox Homology | 94.46 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 94.42 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 94.19 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 94.12 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 94.07 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 94.06 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 93.99 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 93.95 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 93.51 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 93.26 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 93.26 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 93.24 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 93.22 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 93.21 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 93.19 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 93.18 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 93.06 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 93.01 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 92.97 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 92.94 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 92.87 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 92.65 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 92.52 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 92.52 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 92.48 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 92.45 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.44 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 92.42 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 92.34 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 92.3 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 92.21 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 92.15 | |
| KOG0905|consensus | 1639 | 92.13 | ||
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 91.91 | |
| cd07278 | 114 | PX_RICS_like The phosphoinositide binding Phox Hom | 91.85 | |
| PRK07411 | 390 | hypothetical protein; Validated | 91.78 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 91.7 | |
| PLN02602 | 350 | lactate dehydrogenase | 91.4 | |
| cd07299 | 113 | PX_TCGAP The phosphoinositide binding Phox Homolog | 91.23 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 91.22 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 90.94 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 90.93 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 90.62 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 90.5 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 90.36 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 90.32 | |
| KOG4022|consensus | 236 | 89.89 | ||
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 89.6 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.48 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.39 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 89.34 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 89.23 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 88.98 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 88.88 | |
| KOG1494|consensus | 345 | 88.74 | ||
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 88.69 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 88.44 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 87.68 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 87.68 | |
| KOG2528|consensus | 490 | 87.65 | ||
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 87.28 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 87.13 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 86.85 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 86.8 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 86.8 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 86.79 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 86.77 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 86.76 | |
| KOG1178|consensus | 1032 | 86.37 | ||
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 86.25 | |
| KOG1496|consensus | 332 | 86.17 | ||
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 86.15 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 86.13 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 85.54 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 85.52 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 85.48 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 85.41 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 85.26 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 85.14 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 85.07 |
| >KOG1221|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-85 Score=724.84 Aligned_cols=434 Identities=41% Similarity=0.752 Sum_probs=418.6
Q ss_pred hhhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCe
Q psy7542 53 DRISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKV 131 (762)
Q Consensus 53 ~~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV 131 (762)
+++++||+||+|||||||||+|+.|+|+||+.+|++ +||+|+|+++++++++|+++++.+++|+.+++.+ ++..+|+
T Consensus 4 ~~i~~f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~--p~~l~Kv 81 (467)
T KOG1221|consen 4 SDIVQFYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKK--PEALEKV 81 (467)
T ss_pred ccHHHHhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhC--ccceecc
Confidence 348899999999999999999999999999999999 9999999999999999999999999999999999 8899999
Q ss_pred EEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC
Q psy7542 132 IPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK 211 (762)
Q Consensus 132 ~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~ 211 (762)
.+|.||+++++||++++|++.+.++||+|||+||+++|+++++.++.+|+.||++++++|+++++++.|+||||+|++|.
T Consensus 82 ~pi~GDi~~~~LGis~~D~~~l~~eV~ivih~AAtvrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~ 161 (467)
T KOG1221|consen 82 VPIAGDISEPDLGISESDLRTLADEVNIVIHSAATVRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCN 161 (467)
T ss_pred eeccccccCcccCCChHHHHHHHhcCCEEEEeeeeeccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCC--ChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCC
Q psy7542 212 EKVLEEKTYPPPV--SPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIW 289 (762)
Q Consensus 212 ~~~i~E~~~~~p~--~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~ 289 (762)
...++|+.|+.+. ++++++++.++++++.++.+++++.++|||+|++||++||+++.++++ ++|++|+||++|+++.
T Consensus 162 ~~~i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~-~lPivIiRPsiI~st~ 240 (467)
T KOG1221|consen 162 VGHIEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAE-NLPLVIIRPSIITSTY 240 (467)
T ss_pred cccccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhcc-CCCeEEEcCCceeccc
Confidence 9999999999988 899999999999999999999999999999999999999999999988 9999999999999999
Q ss_pred CCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCC-CCceEEEecCCCCCcccH
Q psy7542 290 KDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPG-NTMRVINLTANKDFQITW 368 (762)
Q Consensus 290 ~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~-~~~~iyNi~s~~~~piT~ 368 (762)
++|+|||+||.+||.+++.++++|.++.+.+|++...|+||||+|||++++++|......+ ++..|||++++..||++|
T Consensus 241 ~EP~pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~~~IY~~tss~~Np~t~ 320 (467)
T KOG1221|consen 241 KEPFPGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKTPPIYHLTSSNDNPVTW 320 (467)
T ss_pred cCCCCCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCCCcEEEecccccCcccH
Confidence 9999999999999999999999999999999999999999999999999999987654322 246799999999999999
Q ss_pred HHHHHHHHHhhccCCCCccccccCCccccc--------------------------cCCCchhhHHHHHHhhhhhhhccc
Q psy7542 369 YDIIENGKDIARNKVPLNNVLWYPGGAMTN--------------------------RGYEPVLKRVHNRIKKGFDIFEYY 422 (762)
Q Consensus 369 ~el~~~i~~~~G~~~P~~~~~w~p~~~~~~--------------------------lG~kP~l~~l~~ki~~~~~~l~~f 422 (762)
+++.+...++. .+.|+...+|+|...+.+ .|++|.+.++++++.+..+.+++|
T Consensus 321 ~~~~e~~~~~~-~~~Pl~~~iw~P~~~~~sn~~~f~~~~~~~h~lPa~~~d~~~~i~g~k~~~~k~~~ki~~~~~~l~~f 399 (467)
T KOG1221|consen 321 GDFIELALRYF-EKIPLEKMIWYPFGTLTSNPWLFNLAAFLYHTLPAYILDLLLRLLGKKPRLVKLYRKIHKLVKLLEPF 399 (467)
T ss_pred HHHHHHHHHhc-ccCCcccceeccCceeeecHhHHHHHHHHHHHhhHHHHHHHHHHhCCChhhhHHHHHHHHHHHhhhhh
Confidence 99999999999 899999999999998775 699999999999999999999999
Q ss_pred ccCceeeecHHHHHHHhhcchhhhhcccccccCCCchHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHH
Q psy7542 423 TKNSWSFKNENLHALRNMMNEKEAIRYEIAMFRDLDEAKAYFEMCIHGARQYLLGEPPETLPGAKRHVRI 492 (762)
Q Consensus 423 ~~~~w~Fd~~n~~~L~~~ls~~Dr~~F~fD~~~~id~W~~Y~~~~~~Girkyllke~~~~l~~ar~~~~~ 492 (762)
+.++|.||++|+.+|+..|+++|++.|+||+ +++| |++|+.+|+.|+|+|++||+++++|+||++++|
T Consensus 400 ~~~~w~Fd~~n~~~L~~~~~~~d~~~f~fd~-~~ld-W~ey~~~~i~G~r~~llKe~~e~l~~~r~~~kr 467 (467)
T KOG1221|consen 400 SLFKWIFDNKNTEKLREKMSEEDKRLFNFDM-KQLD-WEEYFNRHLLGLRKYLLKESPESLPQARKRLKR 467 (467)
T ss_pred eeceEEecCccHHHHHHhCCHHHHhhcCCCc-ccCC-HHHHHHHHHHHHHHHHhcCChhhhHHHHHhhcC
Confidence 9999999999999999999999999999999 9999 999999999999999999999999999999875
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-69 Score=621.80 Aligned_cols=421 Identities=27% Similarity=0.450 Sum_probs=367.1
Q ss_pred hhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHH-HHhcChhHHHHHhhhhc---cccc
Q psy7542 54 RISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE-EIFQSPLYEALKKEQSE---SAIF 128 (762)
Q Consensus 54 ~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~-~ll~~~~f~~l~~~~~~---~~~~ 128 (762)
.|++||+|++|||||||||||++|+++||+.+|++ +||+|+|++++.++++|++ ++++.++|++++++.+. ....
T Consensus 112 ~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~ 191 (605)
T PLN02503 112 GIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFML 191 (605)
T ss_pred chhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCcccccccc
Confidence 48899999999999999999999999999998998 9999999999999999995 78889999999987621 1125
Q ss_pred CCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcc
Q psy7542 129 EKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYC 208 (762)
Q Consensus 129 ~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~ 208 (762)
.|++++.||+++++|||++++++.+.+++|+|||+||.++++.+++.++++|+.||.+++++|++++++++|||+||+|+
T Consensus 192 ~Ki~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayV 271 (605)
T PLN02503 192 SKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYV 271 (605)
T ss_pred ccEEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCcee
Confidence 79999999999999999999999999999999999999999999999999999999999999999877899999999999
Q ss_pred cCCCc-ccccccCC-------------------CCCChhhHHHHH----H--hhhHHHHHH-----HHHhhhcCCCchhH
Q psy7542 209 HPKEK-VLEEKTYP-------------------PPVSPHNVIEKA----E--LLSKNELEL-----LKQELLQDFPNGYA 257 (762)
Q Consensus 209 ~~~~~-~i~E~~~~-------------------~p~~p~~~~~~~----e--~l~~e~l~~-----~tp~l~~~~pn~Y~ 257 (762)
++... .+.|+.|+ .+.|+++.++++ + +.+++..+. ++++++++|||+|+
T Consensus 272 yG~~~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt 351 (605)
T PLN02503 272 NGQRQGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYV 351 (605)
T ss_pred ecCCCCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHH
Confidence 99884 89999887 456888888876 2 223344444 77889999999999
Q ss_pred hhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHH
Q psy7542 258 YTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNG 337 (762)
Q Consensus 258 ~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~a 337 (762)
+||++||+++.++.. ++|++|+||++|.++.++|+|||+||.......+..+++|.++.++++++...|+||||.|||+
T Consensus 352 ~TK~lAE~lV~~~~~-~LPv~IvRPsiV~st~~eP~pGw~d~~~~~~p~~~~~g~G~lr~~~~~~~~~~DiVPVD~vvna 430 (605)
T PLN02503 352 FTKAMGEMVINSMRG-DIPVVIIRPSVIESTWKDPFPGWMEGNRMMDPIVLYYGKGQLTGFLADPNGVLDVVPADMVVNA 430 (605)
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEcCCEecccccCCccccccCccccchhhhheeccceeEEEeCCCeeEeEEeecHHHHH
Confidence 999999999998776 9999999999999999999999999944444444445699999999999999999999999999
Q ss_pred HHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHhhccCCCCccccccCCccccc-------------------
Q psy7542 338 VLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMTN------------------- 398 (762)
Q Consensus 338 ii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~~G~~~P~~~~~w~p~~~~~~------------------- 398 (762)
++++++.........+++||++++..+|++|.++.+.+.+++ .+.|+....|+|......
T Consensus 431 ~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~-~~~P~~~~~~~~~~~~~~~~~~~~~~~~~h~~~d~~~ 509 (605)
T PLN02503 431 TLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHY-KSSPYMDSKGRPIHVPPMKLFSSMEDFSSHLWRDALL 509 (605)
T ss_pred HHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHH-hhCCcccccCcceeccCceehhhHHHHHHHHHHHHHH
Confidence 999955432211224789999999889999999999999998 889998877776521111
Q ss_pred -c------CCCchhhHHHHHH--------hhhhhhhcccccCceeeecHHHHHHHhhcchhhhhcccccccCCCchHHHH
Q psy7542 399 -R------GYEPVLKRVHNRI--------KKGFDIFEYYTKNSWSFKNENLHALRNMMNEKEAIRYEIAMFRDLDEAKAY 463 (762)
Q Consensus 399 -l------G~kP~l~~l~~ki--------~~~~~~l~~f~~~~w~Fd~~n~~~L~~~ls~~Dr~~F~fD~~~~id~W~~Y 463 (762)
+ +.+|++.+.++++ .+..+.++||+.++|.|+++|+++|++.|+++||+.|+||+ +.+| |++|
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ft~~~w~F~~~n~~~L~~~ms~~Dr~~F~~D~-~~id-W~~Y 587 (605)
T PLN02503 510 RSGLAGMSSSDRKLSQKLENICAKSVEQAKYLASIYEPYTFYGGRFDNSNTQRLMERMSEEEKAEFGFDV-GSID-WRDY 587 (605)
T ss_pred HHhhhcccccChHHHHHHHHHHHHHHHHHHHHHHHHhhheeCeEEEechHHHHHHHhCCHHHhhccCCCc-CCCC-HHHH
Confidence 1 3788887777654 44889999999999999999999999999999999999999 9999 9999
Q ss_pred HHH-HHHHHhhcccCC
Q psy7542 464 FEM-CIHGARQYLLGE 478 (762)
Q Consensus 464 ~~~-~~~Girkyllke 478 (762)
+.+ |+.|+|+|++|+
T Consensus 588 ~~~~~i~G~rky~lk~ 603 (605)
T PLN02503 588 ITNVHIPGLRRHVMKG 603 (605)
T ss_pred HHHhhhhHHHHHHhcc
Confidence 997 999999999997
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=602.60 Aligned_cols=418 Identities=26% Similarity=0.481 Sum_probs=371.0
Q ss_pred hhhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHH-HHhcChhHHHHHhhhhcccc---
Q psy7542 53 DRISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE-EIFQSPLYEALKKEQSESAI--- 127 (762)
Q Consensus 53 ~~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~-~ll~~~~f~~l~~~~~~~~~--- 127 (762)
++|.+||+||+|||||||||||++|+++||+.++++ +||||+|++++.++++|+. ++.+..+|+++++.. +..
T Consensus 3 ~~i~~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~--~~~~~~ 80 (491)
T PLN02996 3 GSCVQFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKL--GENLNS 80 (491)
T ss_pred ccHHHHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhc--chhhhh
Confidence 468999999999999999999999999999998999 9999999999999999996 788899999888765 322
Q ss_pred --cCCeEEEEeecCCCCCCCCHHH-HHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEe
Q psy7542 128 --FEKVIPINGDVAVPDLGISAED-RQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVS 204 (762)
Q Consensus 128 --~~kV~~V~GDl~~~~LGLs~~~-l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vS 204 (762)
..+++++.||+++++|||++.+ ++.+++++|+|||+||.++++.++..+.++|+.||.+++++|++++++++|||+|
T Consensus 81 ~~~~kv~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vS 160 (491)
T PLN02996 81 LISEKVTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVS 160 (491)
T ss_pred hhhcCEEEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 3799999999999999998877 6788889999999999999998899999999999999999999987789999999
Q ss_pred CCcccCCCc-ccccccCCCCC--------Chh--------hHHHHHHh-hhHHHHHH------HHHhhhcCCCchhHhhh
Q psy7542 205 TAYCHPKEK-VLEEKTYPPPV--------SPH--------NVIEKAEL-LSKNELEL------LKQELLQDFPNGYAYTK 260 (762)
Q Consensus 205 Say~~~~~~-~i~E~~~~~p~--------~p~--------~~~~~~e~-l~~e~l~~------~tp~l~~~~pn~Y~~SK 260 (762)
|+++++... .++|..++.+. +++ ++.+.+++ ++++.++. +++....+|||+|++||
T Consensus 161 T~~vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK 240 (491)
T PLN02996 161 TAYVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTK 240 (491)
T ss_pred eeEEecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhH
Confidence 999887644 67888777554 343 23334433 66666663 67888899999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHH
Q psy7542 261 CLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLL 340 (762)
Q Consensus 261 ~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~ 340 (762)
++||+++.+++. ++|++|+||++|+|+.++|.|||+++..++.+++.+++.|.++.++|++++.+|+|||||||++++.
T Consensus 241 ~~aE~lv~~~~~-~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg~~~~D~v~Vddvv~a~l~ 319 (491)
T PLN02996 241 AMGEMLLGNFKE-NLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFLADPNSVLDVIPADMVVNAMIV 319 (491)
T ss_pred HHHHHHHHHhcC-CCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEecCCCeecceecccHHHHHHHH
Confidence 999999998876 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHhhccCCCCc----cccccCCccccc------------------
Q psy7542 341 STWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIARNKVPLN----NVLWYPGGAMTN------------------ 398 (762)
Q Consensus 341 a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~~G~~~P~~----~~~w~p~~~~~~------------------ 398 (762)
+++..... ...+++||++++..+++||.|+++.+.+++ .+.|+. ..+|+|...+..
T Consensus 320 a~~~~~~~-~~~~~vYNi~s~~~~~~s~~ei~~~~~~~~-~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~lp~~ 397 (491)
T PLN02996 320 AMAAHAGG-QGSEIIYHVGSSLKNPVKFSNLHDFAYRYF-SKNPWINKEGSPVKVGKGTILSTMASFSLYMTIRYLLPLK 397 (491)
T ss_pred HHHHhhcc-CCCCcEEEecCCCCCcccHHHHHHHHHHHh-hhCCCcCCCCCeEeeCCceecCcHHHHHHHHHHHHHhHHH
Confidence 99864211 113579999998888999999999999999 788887 589999887655
Q ss_pred ----------cCCCchhhHHHHHH---hhhhhhhcccccCceeeecHHHHHHHhhcchhh---hhcccccccCCCchHHH
Q psy7542 399 ----------RGYEPVLKRVHNRI---KKGFDIFEYYTKNSWSFKNENLHALRNMMNEKE---AIRYEIAMFRDLDEAKA 462 (762)
Q Consensus 399 ----------lG~kP~l~~l~~ki---~~~~~~l~~f~~~~w~Fd~~n~~~L~~~ls~~D---r~~F~fD~~~~id~W~~ 462 (762)
.|++|++.++++++ ++.++.+++|+.++|.|+++|+++|++.|+++| |++|+||+ +.+| |++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~w~f~~~n~~~l~~~~~~~d~~d~~~f~~d~-~~~~-w~~ 475 (491)
T PLN02996 398 ALQLVNIILPKRYGDKYTDLNRKIKLVMRLVDLYKPYVFFKGIFDDTNTEKLRIKRKETGKEEADMFDFDP-KSID-WED 475 (491)
T ss_pred HHHHHHHHhhhccChHHHHHHHHHHHHHHHHHHhhccccceEEEccHHHHHHHHHCCccccccccEeccCc-ccCC-HHH
Confidence 45899999999999 666999999999999999999999999999955 99999999 9999 999
Q ss_pred HHHH-HHHHHhhcccC
Q psy7542 463 YFEM-CIHGARQYLLG 477 (762)
Q Consensus 463 Y~~~-~~~Girkyllk 477 (762)
|+++ |+.|+|+|++|
T Consensus 476 y~~~~~~~g~~~y~~k 491 (491)
T PLN02996 476 YMTNVHIPGLVKYVLK 491 (491)
T ss_pred HHHHhhHHHHHHHhcC
Confidence 9999 99999999987
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=334.80 Aligned_cols=245 Identities=35% Similarity=0.568 Sum_probs=167.9
Q ss_pred EECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhc-ChhHHHHHhhhhcccccCCeEEEEeecCCCCCC
Q psy7542 66 ITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQ-SPLYEALKKEQSESAIFEKVIPINGDVAVPDLG 144 (762)
Q Consensus 66 VTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~-~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~LG 144 (762)
|||||||||++|+++|++++++++|+||+|+++...+.+|+.+.+. ..+++....+ ..+||+++.||+++++||
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~-----~~~ri~~v~GDl~~~~lG 75 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKE-----ALSRIEVVEGDLSQPNLG 75 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HH-----HTTTEEEEE--TTSGGGG
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhh-----hhccEEEEeccccccccC
Confidence 7999999999999999999655699999999988889999976554 4455443211 258999999999999999
Q ss_pred CCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc-ccccccCCCC
Q psy7542 145 ISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK-VLEEKTYPPP 223 (762)
Q Consensus 145 Ls~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~-~i~E~~~~~p 223 (762)
|++++++.+.+++|+||||||.++|..+++++.++||.||++++++|.+. +.++|+|+||+++.+... .+.|+.++
T Consensus 76 L~~~~~~~L~~~v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~-~~~~~~~iSTa~v~~~~~~~~~~~~~~-- 152 (249)
T PF07993_consen 76 LSDEDYQELAEEVDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQG-KRKRFHYISTAYVAGSRPGTIEEKVYP-- 152 (249)
T ss_dssp --HHHHHHHHHH--EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSS-S---EEEEEEGGGTTS-TTT--SSS-H--
T ss_pred CChHHhhccccccceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhc-cCcceEEeccccccCCCCCcccccccc--
Confidence 99999999999999999999999999999999999999999999999976 445999999987776654 33333211
Q ss_pred CChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCCCCCCCCCC-
Q psy7542 224 VSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPGWTDNIN- 301 (762)
Q Consensus 224 ~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~pGWidn~~- 301 (762)
.+.........++|+|..||++||+++.++.++ |+|++|+|||+|+|. +.+||.+...
T Consensus 153 -----------------~~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~---~~~G~~~~~~~ 212 (249)
T PF07993_consen 153 -----------------EEEDDLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGD---SRTGWWNSDDF 212 (249)
T ss_dssp -----------------HH--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-S---SSSS---TTBH
T ss_pred -----------------cccccchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCccccc---CCCceeeccch
Confidence 011112233467899999999999999999987 999999999999994 4568887776
Q ss_pred CchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHH
Q psy7542 302 GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGV 338 (762)
Q Consensus 302 gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~ai 338 (762)
.+..+...+..|..+...++++...|++|||.||++|
T Consensus 213 ~~~~~~~~~~~~~~p~~~~~~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 213 FPYLLRSCIALGAFPDLPGDPDARLDLVPVDYVARAI 249 (249)
T ss_dssp HHHHHHHHHHH-EEES-SB---TT--EEEHHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccCCCCceEeEECHHHHHhhC
Confidence 5666777777888888888888889999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=295.03 Aligned_cols=300 Identities=20% Similarity=0.228 Sum_probs=238.2
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|++|||||.||||+.+++.+++..++.+|++++.-.-... .+-|..+. ..++..+++||++|.
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn-~~~l~~~~----------------~~~~~~fv~~DI~D~ 63 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGN-LENLADVE----------------DSPRYRFVQGDICDR 63 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCC-HHHHHhhh----------------cCCCceEEeccccCH
Confidence 5799999999999999999999988878999987543221 12222221 236899999999987
Q ss_pred CCCCCHHHHHhhcC--CccEEEEcccccCcccc---HHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc---
Q psy7542 142 DLGISAEDRQMLSE--TIHIVYHIAATVRFDDY---MQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK--- 213 (762)
Q Consensus 142 ~LGLs~~~l~~l~~--~vDiViH~AA~v~f~~~---l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~--- 213 (762)
. .+.++++ ++|+|+|.||..+.+.+ ...++++||.||.+||++|++.-...+|+||||--++++..
T Consensus 64 ~------~v~~~~~~~~~D~VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~ 137 (340)
T COG1088 64 E------LVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDD 137 (340)
T ss_pred H------HHHHHHHhcCCCeEEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCC
Confidence 6 5788887 59999999999887744 45699999999999999999973335899999985555432
Q ss_pred -ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCC
Q psy7542 214 -VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKD 291 (762)
Q Consensus 214 -~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~e 291 (762)
..+|+.+-.|. ++|++||+.++++++.+... |+|++|.|+++-|||++.
T Consensus 138 ~~FtE~tp~~Ps-----------------------------SPYSASKAasD~lVray~~TYglp~~ItrcSNNYGPyqf 188 (340)
T COG1088 138 DAFTETTPYNPS-----------------------------SPYSASKAASDLLVRAYVRTYGLPATITRCSNNYGPYQF 188 (340)
T ss_pred CCcccCCCCCCC-----------------------------CCcchhhhhHHHHHHHHHHHcCCceEEecCCCCcCCCcC
Confidence 35565444444 78999999999999999998 999999999999999988
Q ss_pred CCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHH
Q psy7542 292 PLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDI 371 (762)
Q Consensus 292 P~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el 371 (762)
|- .-...++..++.|....++|+|.+.+||++|+|-|+|+-.++.+... +++|||+++ +..+-.|+
T Consensus 189 pE-------KlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~kg~~-----GE~YNIgg~--~E~~Nlev 254 (340)
T COG1088 189 PE-------KLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLTKGKI-----GETYNIGGG--NERTNLEV 254 (340)
T ss_pred ch-------hhhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHHHHHHHhcCcC-----CceEEeCCC--ccchHHHH
Confidence 63 22335677888999999999999999999999999999999988765 799999999 88999999
Q ss_pred HHHHHHhhccCCC-----CccccccCCcccc----------ccCCCchhhHHHHHHhhhhhhhcccccCceeeec
Q psy7542 372 IENGKDIARNKVP-----LNNVLWYPGGAMT----------NRGYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKN 431 (762)
Q Consensus 372 ~~~i~~~~G~~~P-----~~~~~w~p~~~~~----------~lG~kP~l~~l~~ki~~~~~~l~~f~~~~w~Fd~ 431 (762)
++.+.+.+|...| +..+.-.|.-... .+||+|.. .+..++++ ..+||..++|.+..
T Consensus 255 v~~i~~~l~~~~~~~~~li~~V~DRpGHD~RYaid~~Ki~~eLgW~P~~-~fe~Glrk---Tv~WY~~N~~Ww~~ 325 (340)
T COG1088 255 VKTICELLGKDKPDYRDLITFVEDRPGHDRRYAIDASKIKRELGWRPQE-TFETGLRK---TVDWYLDNEWWWEP 325 (340)
T ss_pred HHHHHHHhCccccchhhheEeccCCCCCccceeechHHHhhhcCCCcCC-CHHHHHHH---HHHHHHhchHHHhh
Confidence 9999999987766 3333333332211 19999965 88888877 66777888876543
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=300.17 Aligned_cols=265 Identities=20% Similarity=0.197 Sum_probs=198.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|||||||||||++|+++|++. +.+|++++|...+.. ..+.+... .. . .....++.++.||+
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~--g~~V~~~d~~~~~~~--~~~~~~~~-----~~---~--~~~~~~~~~~~~Di 78 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFL--NQTVIGLDNFSTGYQ--HNLDDVRT-----SV---S--EEQWSRFIFIQGDI 78 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCCCcch--hhhhhhhh-----cc---c--cccCCceEEEEccC
Confidence 47799999999999999999999998 678899998654321 11211110 00 0 11124688999999
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC--Cc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK--EK 213 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~--~~ 213 (762)
.+.. ++..+++++|+|||+||..... .+.....++|+.||.+++++|++. ++++|||+||+.+++. ..
T Consensus 79 ~d~~------~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~~~v~~SS~~vyg~~~~~ 151 (348)
T PRK15181 79 RKFT------DCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDA-HVSSFTYAASSSTYGDHPDL 151 (348)
T ss_pred CCHH------HHHHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEeechHhhCCCCCC
Confidence 9864 6888888999999999975432 334567899999999999999997 7899999999855543 22
Q ss_pred ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCC
Q psy7542 214 VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDP 292 (762)
Q Consensus 214 ~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP 292 (762)
++.|+....|. +.|+.||.++|.++..+.+. +++++++||+.|||+...|
T Consensus 152 ~~~e~~~~~p~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~ 202 (348)
T PRK15181 152 PKIEERIGRPL-----------------------------SPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNP 202 (348)
T ss_pred CCCCCCCCCCC-----------------------------ChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCC
Confidence 34443322222 67999999999999988766 9999999999999997653
Q ss_pred CCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHH
Q psy7542 293 LPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDII 372 (762)
Q Consensus 293 ~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~ 372 (762)
...+ ......++..+..|....+.+++++.+|++||||+|++++.++..... ...+++||++++ +++|+.|++
T Consensus 203 ~~~~---~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a~~~~~~~~~~--~~~~~~yni~~g--~~~s~~e~~ 275 (348)
T PRK15181 203 NGAY---SAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQANLLSATTNDL--ASKNKVYNVAVG--DRTSLNELY 275 (348)
T ss_pred CCcc---ccCHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhcccc--cCCCCEEEecCC--CcEeHHHHH
Confidence 2110 011234555666677667788999999999999999999887754321 013689999998 889999999
Q ss_pred HHHHHhhc
Q psy7542 373 ENGKDIAR 380 (762)
Q Consensus 373 ~~i~~~~G 380 (762)
+.+.+..+
T Consensus 276 ~~i~~~~~ 283 (348)
T PRK15181 276 YLIRDGLN 283 (348)
T ss_pred HHHHHHhC
Confidence 99998874
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=285.51 Aligned_cols=288 Identities=20% Similarity=0.293 Sum_probs=224.7
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCC--eEEEEeecC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEK--VIPINGDVA 139 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~k--V~~V~GDl~ 139 (762)
|+||||||+||||+|.+.+|++. +.+|.+++.-..+.. ....+ +.+++||+.
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~--G~~vvV~DNL~~g~~------------------------~~v~~~~~~f~~gDi~ 54 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKT--GHEVVVLDNLSNGHK------------------------IALLKLQFKFYEGDLL 54 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHC--CCeEEEEecCCCCCH------------------------HHhhhccCceEEeccc
Confidence 58999999999999999999998 667777777655421 11122 689999999
Q ss_pred CCCCCCCHHHHHhhcC--CccEEEEcccccCcccc---HHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCC--cccCCC
Q psy7542 140 VPDLGISAEDRQMLSE--TIHIVYHIAATVRFDDY---MQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA--YCHPKE 212 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~--~vDiViH~AA~v~f~~~---l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSa--y~~~~~ 212 (762)
|.. .+.++++ ++|.|||+||.....++ .-..++.||.||.+|++++++. +++.|||-||+ |+.+..
T Consensus 55 D~~------~L~~vf~~~~idaViHFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~-gv~~~vFSStAavYG~p~~ 127 (329)
T COG1087 55 DRA------LLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQT-GVKKFIFSSTAAVYGEPTT 127 (329)
T ss_pred cHH------HHHHHHHhcCCCEEEECccccccchhhhCHHHHHhhchHhHHHHHHHHHHh-CCCEEEEecchhhcCCCCC
Confidence 876 4677665 58999999998765543 3468999999999999999998 89999999998 555555
Q ss_pred cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCC
Q psy7542 213 KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKD 291 (762)
Q Consensus 213 ~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~e 291 (762)
.||.|+.+..|. |+|+.||.+.|++++.+++. +++++++|..++.|...+
T Consensus 128 ~PI~E~~~~~p~-----------------------------NPYG~sKlm~E~iL~d~~~a~~~~~v~LRYFN~aGA~~~ 178 (329)
T COG1087 128 SPISETSPLAPI-----------------------------NPYGRSKLMSEEILRDAAKANPFKVVILRYFNVAGACPD 178 (329)
T ss_pred cccCCCCCCCCC-----------------------------CcchhHHHHHHHHHHHHHHhCCCcEEEEEecccccCCCC
Confidence 689998777665 88999999999999999987 999999999999999766
Q ss_pred CCCC-CCCCCCCchHHHHHHhcCCeE--EEee------CCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCC
Q psy7542 292 PLPG-WTDNINGPTGLLIGAGKGIIR--TMYC------DYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANK 362 (762)
Q Consensus 292 P~pG-Widn~~gp~~li~~~~~G~l~--~i~g------d~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~ 362 (762)
..-| |..+......++..+..|... .++| ||..++|+|||.|+|+|.+.|+..-... ....+||+++|
T Consensus 179 G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~DLA~aH~~Al~~L~~~--g~~~~~NLG~G- 255 (329)
T COG1087 179 GTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDLADAHVLALKYLKEG--GSNNIFNLGSG- 255 (329)
T ss_pred CccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhHHHHHHHHHHHHHHhC--CceeEEEccCC-
Confidence 4333 333333333445555566544 3444 6789999999999999999998865431 13479999999
Q ss_pred CCcccHHHHHHHHHHhhccCCCCccccccCCccccc----------cCCCchhhHHHHHHhhh
Q psy7542 363 DFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMTN----------RGYEPVLKRVHNRIKKG 415 (762)
Q Consensus 363 ~~piT~~el~~~i~~~~G~~~P~~~~~w~p~~~~~~----------lG~kP~l~~l~~ki~~~ 415 (762)
+..|..|+++.+++..|.+.|.+.....+...... +||+|....+..-+..+
T Consensus 256 -~G~SV~evi~a~~~vtg~~ip~~~~~RR~GDpa~l~Ad~~kA~~~Lgw~p~~~~L~~ii~~a 317 (329)
T COG1087 256 -NGFSVLEVIEAAKKVTGRDIPVEIAPRRAGDPAILVADSSKARQILGWQPTYDDLEDIIKDA 317 (329)
T ss_pred -CceeHHHHHHHHHHHhCCcCceeeCCCCCCCCceeEeCHHHHHHHhCCCcccCCHHHHHHHH
Confidence 89999999999999999888887655554432221 99999987776666553
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=301.25 Aligned_cols=281 Identities=25% Similarity=0.325 Sum_probs=205.6
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++||+||||||+|.+|+++||.+ .+.+|+||+|..+.+.+.+||++.+.. +.... ....++|+++.||++++
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~-~~~kv~cLVRA~s~E~a~~RL~~~~~~--~~~~~-----e~~~~ri~vv~gDl~e~ 72 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDR-SDAKVICLVRAQSDEAALARLEKTFDL--YRHWD-----ELSADRVEVVAGDLAEP 72 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhc-CCCcEEEEEecCCHHHHHHHHHHHhhh--hhhhh-----hhhcceEEEEecccccc
Confidence 57999999999999999999998 457999999999999999999998761 11111 34568999999999999
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccCC
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYP 221 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~~ 221 (762)
+|||++.+++.|.++||.|||+||.+++..++.+....||.||.+++++|... +.|.|+||||+.+......-..+.-.
T Consensus 73 ~lGL~~~~~~~La~~vD~I~H~gA~Vn~v~pYs~L~~~NVlGT~evlrLa~~g-k~Kp~~yVSsisv~~~~~~~~~~~~~ 151 (382)
T COG3320 73 DLGLSERTWQELAENVDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLAATG-KPKPLHYVSSISVGETEYYSNFTVDF 151 (382)
T ss_pred cCCCCHHHHHHHhhhcceEEecchhhcccCcHHHhcCcchHhHHHHHHHHhcC-CCceeEEEeeeeeccccccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999985 78999999999664433211111000
Q ss_pred CCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCCC
Q psy7542 222 PPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNIN 301 (762)
Q Consensus 222 ~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~~ 301 (762)
... .-+......++++|+.|||+||.+++++.++|+|++|+|||.|.|+.+.+. .....
T Consensus 152 ~~~------------------~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~rGLpv~I~Rpg~I~gds~tG~---~n~~D 210 (382)
T COG3320 152 DEI------------------SPTRNVGQGLAGGYGRSKWVAEKLVREAGDRGLPVTIFRPGYITGDSRTGA---LNTRD 210 (382)
T ss_pred ccc------------------cccccccCccCCCcchhHHHHHHHHHHHhhcCCCeEEEecCeeeccCccCc---cccch
Confidence 000 001112345679999999999999999999999999999999999987421 11112
Q ss_pred CchHHHHHHh-cCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC-------CCCCCceEEEecCCCCCcccHHHHHH
Q psy7542 302 GPTGLLIGAG-KGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS-------NPGNTMRVINLTANKDFQITWYDIIE 373 (762)
Q Consensus 302 gp~~li~~~~-~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~-------~~~~~~~iyNi~s~~~~piT~~el~~ 373 (762)
..+.++..+. .|..+ +.+...|.+|+|.++.++...+..... ........|+ .......+...++.+
T Consensus 211 ~~~Rlv~~~~~lg~~P----~~~~~~~~~p~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~-~~~~~~~i~l~~~~~ 285 (382)
T COG3320 211 FLTRLVLGLLQLGIAP----DSEYSLDMLPVDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLH-MLTHPDEIGLDEYVD 285 (382)
T ss_pred HHHHHHHHHHHhCCCC----CcccchhhCccceeeEEeehhhhhHHHHHHHhccCccchhhhee-cccCCCccchhHHHH
Confidence 2223333222 33332 445567788877777666554443320 0001123444 222237899999999
Q ss_pred HHHH
Q psy7542 374 NGKD 377 (762)
Q Consensus 374 ~i~~ 377 (762)
++.+
T Consensus 286 w~~~ 289 (382)
T COG3320 286 WLIS 289 (382)
T ss_pred hHhh
Confidence 9887
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.3e-31 Score=280.42 Aligned_cols=256 Identities=21% Similarity=0.227 Sum_probs=196.9
Q ss_pred EEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCCCC
Q psy7542 65 FITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLG 144 (762)
Q Consensus 65 LVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~LG 144 (762)
|||||+||||++|+++|+++++..+|.+++|........ . .......+++.||+++++
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~----~----------------~~~~~~~~~~~~Di~d~~-- 58 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLK----D----------------LQKSGVKEYIQGDITDPE-- 58 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccch----h----------------hhcccceeEEEeccccHH--
Confidence 699999999999999999996424889998876542110 0 011233449999999977
Q ss_pred CCHHHHHhhcCCccEEEEcccccCcc--ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC---Cccc---c
Q psy7542 145 ISAEDRQMLSETIHIVYHIAATVRFD--DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK---EKVL---E 216 (762)
Q Consensus 145 Ls~~~l~~l~~~vDiViH~AA~v~f~--~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~---~~~i---~ 216 (762)
++.++++++|+|||+||.+... .+.+..+++||.||++++++|++. ++++|||+||+.+..+ ..++ +
T Consensus 59 ----~l~~a~~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~-~VkrlVytSS~~vv~~~~~~~~~~~~d 133 (280)
T PF01073_consen 59 ----SLEEALEGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKA-GVKRLVYTSSISVVFDNYKGDPIINGD 133 (280)
T ss_pred ----HHHHHhcCCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEcCcceeEeccCCCCcccCC
Confidence 8999999999999999987654 356779999999999999999997 8999999999976554 2222 2
Q ss_pred cccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH------cCCCEEEEeeeeeccCCC
Q psy7542 217 EKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME------AGMPCMILRPSIIIPIWK 290 (762)
Q Consensus 217 E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~------~glpv~IvRPs~V~G~~~ 290 (762)
|..+ .|. .+.+.|+.||++||+++.++.. ..+.++++||+.|||+..
T Consensus 134 E~~~-~~~--------------------------~~~~~Y~~SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d 186 (280)
T PF01073_consen 134 EDTP-YPS--------------------------SPLDPYAESKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGD 186 (280)
T ss_pred cCCc-ccc--------------------------cccCchHHHHHHHHHHHHhhcccccccccceeEEEEeccEEeCccc
Confidence 3211 111 1337899999999999999876 259999999999999965
Q ss_pred CCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCC---CCCCceEEEecCCCCCccc
Q psy7542 291 DPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSN---PGNTMRVINLTANKDFQIT 367 (762)
Q Consensus 291 eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~---~~~~~~iyNi~s~~~~piT 367 (762)
.. ....+...+..|......+++....|+++|+|||.|++.|+..-... ....++.|+|+++ +|+.
T Consensus 187 ~~---------~~~~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~~G~~y~itd~--~p~~ 255 (280)
T PF01073_consen 187 QR---------LVPRLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQALLEPGKPERVAGQAYFITDG--EPVP 255 (280)
T ss_pred cc---------ccchhhHHHHhcccceeecCCCceECcEeHHHHHHHHHHHHHHhccccccccCCCcEEEEECC--CccC
Confidence 31 11224445556666677888889999999999999999988643221 2236899999999 8999
Q ss_pred -HHHHHHHHHHhhccCCCC
Q psy7542 368 -WYDIIENGKDIARNKVPL 385 (762)
Q Consensus 368 -~~el~~~i~~~~G~~~P~ 385 (762)
+.||...+.+.+|.+.|.
T Consensus 256 ~~~~f~~~~~~~~G~~~~~ 274 (280)
T PF01073_consen 256 SFWDFMRPLWEALGYPPPK 274 (280)
T ss_pred cHHHHHHHHHHHCCCCCCc
Confidence 999999999999776554
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=283.20 Aligned_cols=278 Identities=24% Similarity=0.310 Sum_probs=202.6
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccc-cCCeEEEEeecCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAI-FEKVIPINGDVAVP 141 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~-~~kV~~V~GDl~~~ 141 (762)
+|||||||||||++|+++|++.++..+|+|++|+.....+.+|+++.+...... . ... ..+++++.||++++
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~-----~--~~~~~~~v~~~~~D~~~~ 73 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLW-----Q--EDLARERIEVVAGDLSEP 73 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCC-----C--chhhhCCEEEEeCCcCcc
Confidence 589999999999999999999965469999999876555566776544311100 0 011 15899999999999
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc--cccccc
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK--VLEEKT 219 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~--~i~E~~ 219 (762)
.+||+.+++..+.+++|+|||+||.+++..++....++|+.|+.+++++|.+. +.++|||+||..+.+... .+.|..
T Consensus 74 ~~gl~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~~-~~~~~v~iSS~~v~~~~~~~~~~~~~ 152 (367)
T TIGR01746 74 RLGLSDAEWERLAENVDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAASG-RAKPLHYVSTISVLAAIDLSTVTEDD 152 (367)
T ss_pred cCCcCHHHHHHHHhhCCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhhC-CCceEEEEccccccCCcCCCCccccc
Confidence 99999999999999999999999999888888889999999999999999986 678899999997665422 112211
Q ss_pred CCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCC
Q psy7542 220 YPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDN 299 (762)
Q Consensus 220 ~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn 299 (762)
...+. .....++|+.||+.+|.++.++.+.|++++++|||.|+|+... |....
T Consensus 153 ~~~~~------------------------~~~~~~~Y~~sK~~~E~~~~~~~~~g~~~~i~Rpg~v~G~~~~---g~~~~ 205 (367)
T TIGR01746 153 AIVTP------------------------PPGLAGGYAQSKWVAELLVREASDRGLPVTIVRPGRILGNSYT---GAINS 205 (367)
T ss_pred ccccc------------------------ccccCCChHHHHHHHHHHHHHHHhcCCCEEEECCCceeecCCC---CCCCc
Confidence 10000 0112378999999999999988766999999999999997433 21111
Q ss_pred CCCchHHHHHHh-cCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHh
Q psy7542 300 INGPTGLLIGAG-KGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDI 378 (762)
Q Consensus 300 ~~gp~~li~~~~-~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~ 378 (762)
......++.... .|. ++.......+++||||+|++++.++...... ..+++||++++ ++++|.|+++.+.+
T Consensus 206 ~~~~~~~~~~~~~~~~---~p~~~~~~~~~~~vddva~ai~~~~~~~~~~--~~~~~~~v~~~--~~~s~~e~~~~i~~- 277 (367)
T TIGR01746 206 SDILWRMVKGCLALGA---YPDSPELTEDLTPVDYVARAIVALSSQPAAS--AGGPVFHVVNP--EPVSLDEFLEWLER- 277 (367)
T ss_pred hhHHHHHHHHHHHhCC---CCCCCccccCcccHHHHHHHHHHHHhCCCcc--cCCceEEecCC--CCCCHHHHHHHHHH-
Confidence 111111222222 222 2222223678999999999999988765420 02689999998 89999999999998
Q ss_pred hccCC
Q psy7542 379 ARNKV 383 (762)
Q Consensus 379 ~G~~~ 383 (762)
.|.+.
T Consensus 278 ~g~~~ 282 (367)
T TIGR01746 278 AGYNL 282 (367)
T ss_pred cCCCC
Confidence 65543
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=282.84 Aligned_cols=286 Identities=15% Similarity=0.117 Sum_probs=193.7
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
+.|+|||||||||||++|+++|++++ +.+|++++|.... ...+.... . .....+++++.||+.
T Consensus 13 ~~~~VlVTGgtGfIGs~lv~~L~~~~-g~~V~~l~r~~~~------~~~l~~~~--------~--~~~~~~~~~~~~Dl~ 75 (386)
T PLN02427 13 KPLTICMIGAGGFIGSHLCEKLMTET-PHKVLALDVYNDK------IKHLLEPD--------T--VPWSGRIQFHRINIK 75 (386)
T ss_pred cCcEEEEECCcchHHHHHHHHHHhcC-CCEEEEEecCchh------hhhhhccc--------c--ccCCCCeEEEEcCCC
Confidence 56899999999999999999999982 3688999886421 11111100 0 112347999999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--cc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--KV 214 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~~ 214 (762)
++. ++.++++++|+|||+||.... .......+..|+.|+.+++++|++. + ++|||+||..+++.. ..
T Consensus 76 d~~------~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~-~-~r~v~~SS~~vYg~~~~~~ 147 (386)
T PLN02427 76 HDS------RLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSEN-N-KRLIHFSTCEVYGKTIGSF 147 (386)
T ss_pred ChH------HHHHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhc-C-CEEEEEeeeeeeCCCcCCC
Confidence 865 688888899999999997542 2333456678999999999999986 4 799999998665532 23
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPL 293 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~ 293 (762)
++|+.+..+..... -.+++. ......-.....+.|+.||.++|+++..+++. +++++|+||++|||+.....
T Consensus 148 ~~e~~p~~~~~~~~------~~~e~~-~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~ 220 (386)
T PLN02427 148 LPKDHPLRQDPAFY------VLKEDE-SPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFI 220 (386)
T ss_pred CCcccccccccccc------cccccc-cccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCcc
Confidence 33332211100000 000000 00000000112367999999999999988765 99999999999999976433
Q ss_pred CCC-CC--CCCC-chHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHH
Q psy7542 294 PGW-TD--NING-PTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWY 369 (762)
Q Consensus 294 pGW-id--n~~g-p~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~ 369 (762)
+|- .. .... ...++..+..|....+.+++++.+|+|||+|+|++++.++.+.... .+++||++++. .++|+.
T Consensus 221 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~g~~~r~~i~V~Dva~ai~~al~~~~~~---~g~~yni~~~~-~~~s~~ 296 (386)
T PLN02427 221 PGIDGPSEGVPRVLACFSNNLLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARA---NGHIFNVGNPN-NEVTVR 296 (386)
T ss_pred ccccccccccchHHHHHHHHHhcCCCeEEECCCCceECcEeHHHHHHHHHHHHhCcccc---cCceEEeCCCC-CCccHH
Confidence 320 00 0000 1123345556766677888888999999999999999998765311 35799999861 389999
Q ss_pred HHHHHHHHhhcc
Q psy7542 370 DIIENGKDIARN 381 (762)
Q Consensus 370 el~~~i~~~~G~ 381 (762)
|+++.+.+.+|.
T Consensus 297 el~~~i~~~~g~ 308 (386)
T PLN02427 297 QLAEMMTEVYAK 308 (386)
T ss_pred HHHHHHHHHhcc
Confidence 999999998863
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=275.92 Aligned_cols=253 Identities=18% Similarity=0.206 Sum_probs=188.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++|||||||||||++|+++|++.+.. .|.++.|..+.. ...++... ....++.++.+|++++
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~-~v~~~~~~~~~~-~~~~~~~~----------------~~~~~~~~~~~Dl~d~ 63 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSD-AVVVVDKLTYAG-NLMSLAPV----------------AQSERFAFEKVDICDR 63 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCC-EEEEEecCcccc-chhhhhhc----------------ccCCceEEEECCCcCh
Confidence 58999999999999999999998432 233444432111 11111110 0124688899999987
Q ss_pred CCCCCHHHHHhhcCC--ccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHc--------CCccEEEEEeCCcc
Q psy7542 142 DLGISAEDRQMLSET--IHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQM--------IHLQLFVYVSTAYC 208 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~--vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~--------~~lk~fV~vSSay~ 208 (762)
+ ++.+++++ +|+|||+||..... +.....+++|+.||.+++++|++. +++++|||+||..+
T Consensus 64 ~------~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~v 137 (355)
T PRK10217 64 A------ELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEV 137 (355)
T ss_pred H------HHHHHHhhcCCCEEEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhh
Confidence 6 67777764 89999999986543 245678999999999999999863 35689999999755
Q ss_pred cCC----CcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeee
Q psy7542 209 HPK----EKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPS 283 (762)
Q Consensus 209 ~~~----~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs 283 (762)
++. ..+++|+....|. +.|+.||..+|.++..+++. +++++++||+
T Consensus 138 yg~~~~~~~~~~E~~~~~p~-----------------------------s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~ 188 (355)
T PRK10217 138 YGDLHSTDDFFTETTPYAPS-----------------------------SPYSASKASSDHLVRAWLRTYGLPTLITNCS 188 (355)
T ss_pred cCCCCCCCCCcCCCCCCCCC-----------------------------ChhHHHHHHHHHHHHHHHHHhCCCeEEEeee
Confidence 442 2246665433332 68999999999999998765 9999999999
Q ss_pred eeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCC
Q psy7542 284 IIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKD 363 (762)
Q Consensus 284 ~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~ 363 (762)
+|||+...|. .....++..+..|....+++++++.+|++||+|+|.+++.++.... .+++||++++
T Consensus 189 ~v~Gp~~~~~-------~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~-----~~~~yni~~~-- 254 (355)
T PRK10217 189 NNYGPYHFPE-------KLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHARALYCVATTGK-----VGETYNIGGH-- 254 (355)
T ss_pred eeeCCCCCcc-------cHHHHHHHHHhcCCCceEeCCCCeeeCcCcHHHHHHHHHHHHhcCC-----CCCeEEeCCC--
Confidence 9999875321 1122344555666655677899999999999999999999887633 2589999999
Q ss_pred CcccHHHHHHHHHHhhcc
Q psy7542 364 FQITWYDIIENGKDIARN 381 (762)
Q Consensus 364 ~piT~~el~~~i~~~~G~ 381 (762)
+++|+.|+++.+.+..|.
T Consensus 255 ~~~s~~~~~~~i~~~~~~ 272 (355)
T PRK10217 255 NERKNLDVVETICELLEE 272 (355)
T ss_pred CcccHHHHHHHHHHHhcc
Confidence 899999999999998863
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=300.37 Aligned_cols=297 Identities=22% Similarity=0.212 Sum_probs=214.8
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
.+|++|+|||||||||||++|+++|++.+++++|++++|..... ++..+.. .....+++++.+
T Consensus 2 ~~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~----~~~~l~~-------------~~~~~~v~~~~~ 64 (668)
T PLN02260 2 ATYEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCS----NLKNLNP-------------SKSSPNFKFVKG 64 (668)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccc----hhhhhhh-------------cccCCCeEEEEC
Confidence 47899999999999999999999999987778999998853211 1111100 111357899999
Q ss_pred ecCCCCCCCCHHHHHhhc--CCccEEEEcccccCccc---cHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC
Q psy7542 137 DVAVPDLGISAEDRQMLS--ETIHIVYHIAATVRFDD---YMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK 211 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~--~~vDiViH~AA~v~f~~---~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~ 211 (762)
|+++++ .+..++ .++|+|||+||....+. ......++|+.||.+++++|++.+.+++|||+||..+++.
T Consensus 65 Dl~d~~------~~~~~~~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~ 138 (668)
T PLN02260 65 DIASAD------LVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGE 138 (668)
T ss_pred CCCChH------HHHHHHhhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCC
Confidence 999875 344443 57999999999876543 2346789999999999999999855899999999866554
Q ss_pred Ccc-----cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeee
Q psy7542 212 EKV-----LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSII 285 (762)
Q Consensus 212 ~~~-----i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V 285 (762)
... ..|+....| .+.|+.||..+|+++..+.+. +++++|+||++|
T Consensus 139 ~~~~~~~~~~E~~~~~p-----------------------------~~~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~V 189 (668)
T PLN02260 139 TDEDADVGNHEASQLLP-----------------------------TNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNV 189 (668)
T ss_pred CccccccCccccCCCCC-----------------------------CCCcHHHHHHHHHHHHHHHHHcCCCEEEECcccc
Confidence 321 122211111 268999999999999998765 999999999999
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCc
Q psy7542 286 IPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQ 365 (762)
Q Consensus 286 ~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~p 365 (762)
||+.+.+. .....++..+..|....+++++++.+++|||+|+|+++..++.... .+++||++++ ++
T Consensus 190 yGp~~~~~-------~~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a~~~~l~~~~-----~~~vyni~~~--~~ 255 (668)
T PLN02260 190 YGPNQFPE-------KLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGE-----VGHVYNIGTK--KE 255 (668)
T ss_pred cCcCCCcc-------cHHHHHHHHHhCCCCeEEecCCCceEeeEEHHHHHHHHHHHHhcCC-----CCCEEEECCC--Ce
Confidence 99865321 1112344555667666678899999999999999999998886543 2579999998 88
Q ss_pred ccHHHHHHHHHHhhccCCCC--ccccccCC--------c-cccccCCCchhhHHHHHHhhhhhhhc
Q psy7542 366 ITWYDIIENGKDIARNKVPL--NNVLWYPG--------G-AMTNRGYEPVLKRVHNRIKKGFDIFE 420 (762)
Q Consensus 366 iT~~el~~~i~~~~G~~~P~--~~~~w~p~--------~-~~~~lG~kP~l~~l~~ki~~~~~~l~ 420 (762)
+|+.|+++.+.+.+|.+.+. ....-.|. . ....+||+|.. .+.+.+.+.+++++
T Consensus 256 ~s~~el~~~i~~~~g~~~~~~i~~~~~~p~~~~~~~~d~~k~~~lGw~p~~-~~~egl~~~i~w~~ 320 (668)
T PLN02260 256 RRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDDQKLKKLGWQERT-SWEEGLKKTMEWYT 320 (668)
T ss_pred eEHHHHHHHHHHHhCCCCcceeeecCCCCCCcceeecCHHHHHHcCCCCCC-CHHHHHHHHHHHHH
Confidence 99999999999998754221 10000010 0 01128999985 77888877555443
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=282.53 Aligned_cols=286 Identities=19% Similarity=0.197 Sum_probs=206.9
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+|||||||||||++|+++|+++ +.+|++++|...+. .+.+.... ...+++++.+|+.
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~--G~~V~~ldr~~~~~--~~~~~~~~----------------~~~~~~~~~~Di~ 178 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGR--GDEVIVIDNFFTGR--KENLVHLF----------------GNPRFELIRHDVV 178 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCCCcc--HhHhhhhc----------------cCCceEEEECccc
Confidence 4689999999999999999999998 67888898864321 11111110 1246788999987
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--cc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--KV 214 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~~ 214 (762)
++. +.++|+|||+||.... ..+....+++|+.||.+++++|++. + .+|||+||.+++++. .+
T Consensus 179 ~~~-----------~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~-g-~r~V~~SS~~VYg~~~~~p 245 (436)
T PLN02166 179 EPI-----------LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-G-ARFLLTSTSEVYGDPLEHP 245 (436)
T ss_pred ccc-----------ccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHh-C-CEEEEECcHHHhCCCCCCC
Confidence 653 2579999999996542 2345678999999999999999987 4 489999998666543 34
Q ss_pred cccccCC--CCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCC
Q psy7542 215 LEEKTYP--PPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKD 291 (762)
Q Consensus 215 i~E~~~~--~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~e 291 (762)
++|+.+. .|.++. +.|+.||..+|+++..+.+. +++++++||++|||+...
T Consensus 246 ~~E~~~~~~~p~~p~--------------------------s~Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~ 299 (436)
T PLN02166 246 QKETYWGNVNPIGER--------------------------SCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMC 299 (436)
T ss_pred CCccccccCCCCCCC--------------------------CchHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCC
Confidence 5554321 122221 68999999999999998776 999999999999998643
Q ss_pred CCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHH
Q psy7542 292 PLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDI 371 (762)
Q Consensus 292 P~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el 371 (762)
+..+ .....++..+..|....+++++++.+||++|+|+|++++.++.... .++||++++ +++|+.|+
T Consensus 300 ~~~~-----~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~~~~~~~~------~giyNIgs~--~~~Si~el 366 (436)
T PLN02166 300 LDDG-----RVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVALMEGEH------VGPFNLGNP--GEFTMLEL 366 (436)
T ss_pred CCcc-----chHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhcCC------CceEEeCCC--CcEeHHHH
Confidence 2110 1123466667777777788999999999999999999999886432 369999998 88999999
Q ss_pred HHHHHHhhccCCCCcccc------ccCCccccc----cCCCchhhHHHHHHhhhhhh
Q psy7542 372 IENGKDIARNKVPLNNVL------WYPGGAMTN----RGYEPVLKRVHNRIKKGFDI 418 (762)
Q Consensus 372 ~~~i~~~~G~~~P~~~~~------w~p~~~~~~----lG~kP~l~~l~~ki~~~~~~ 418 (762)
++.+.+..|.+..+.... +........ +||+|+. .+.+.+....++
T Consensus 367 a~~I~~~~g~~~~i~~~p~~~~~~~~~~~d~~Ka~~~LGw~P~~-sl~egl~~~i~~ 422 (436)
T PLN02166 367 AEVVKETIDSSATIEFKPNTADDPHKRKPDISKAKELLNWEPKI-SLREGLPLMVSD 422 (436)
T ss_pred HHHHHHHhCCCCCeeeCCCCCCCccccccCHHHHHHHcCCCCCC-CHHHHHHHHHHH
Confidence 999999997543322110 100011111 7999987 688887764444
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-29 Score=282.15 Aligned_cols=274 Identities=16% Similarity=0.120 Sum_probs=192.1
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCc-c-------------hHHHHHHHhcChhHHHHHhhh
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNK-N-------------SRERLEEIFQSPLYEALKKEQ 122 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~-~-------------~~eRl~~ll~~~~f~~l~~~~ 122 (762)
.-.++|+|||||||||||++|+++|++. +.+|++++|..... . ..++++.+ .
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~--- 108 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKR--GYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRW---------K--- 108 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHC--CCeEEEEeccccccccccccccccccccchHHHHHHH---------H---
Confidence 4468899999999999999999999998 66778876532111 0 01112111 0
Q ss_pred hcccccCCeEEEEeecCCCCCCCCHHHHHhhcC--CccEEEEcccccCcc----c--cHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 123 SESAIFEKVIPINGDVAVPDLGISAEDRQMLSE--TIHIVYHIAATVRFD----D--YMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 123 ~~~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~--~vDiViH~AA~v~f~----~--~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
.....+++++.+|+++++ .+..+++ ++|+|||+||..... . .....+++|+.||.+++++|++.
T Consensus 109 --~~~~~~v~~v~~Dl~d~~------~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~ 180 (442)
T PLN02572 109 --EVSGKEIELYVGDICDFE------FLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEF 180 (442)
T ss_pred --HhhCCcceEEECCCCCHH------HHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 001246899999999875 6777766 589999999875422 1 12345789999999999999987
Q ss_pred CCcc-EEEEEeCCcccCCC-cccccccC-----------CCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhH
Q psy7542 195 IHLQ-LFVYVSTAYCHPKE-KVLEEKTY-----------PPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKC 261 (762)
Q Consensus 195 ~~lk-~fV~vSSay~~~~~-~~i~E~~~-----------~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~ 261 (762)
+++ +||++||..+++.. .+++|... +.|..| -+.|+.||.
T Consensus 181 -gv~~~~V~~SS~~vYG~~~~~~~E~~i~~~~~~~e~~~~~~~~P--------------------------~s~Yg~SK~ 233 (442)
T PLN02572 181 -APDCHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQA--------------------------SSFYHLSKV 233 (442)
T ss_pred -CCCccEEEEecceecCCCCCCCcccccccccccccccccCCCCC--------------------------CCcchhHHH
Confidence 564 89999998666532 23333211 011111 268999999
Q ss_pred HHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCC---CCCC-----CCC--CCchHHHHHHhcCCeEEEeeCCCccccccc
Q psy7542 262 LCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPL---PGWT-----DNI--NGPTGLLIGAGKGIIRTMYCDYSTCADFLP 330 (762)
Q Consensus 262 ~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~---pGWi-----dn~--~gp~~li~~~~~G~l~~i~gd~~~~~d~Vp 330 (762)
++|.++..+++. |++++++||+.|||+.+.+. +.-+ ++. .....++..+..|....+++++++.+||++
T Consensus 234 a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~~~~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~ 313 (442)
T PLN02572 234 HDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLD 313 (442)
T ss_pred HHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcccchhhHHHHHHHHHhcCCCceecCCCCEEECeEE
Confidence 999999998877 99999999999999975431 0000 000 112234556666776667889999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHh---hccCCC
Q psy7542 331 VDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDI---ARNKVP 384 (762)
Q Consensus 331 VDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~---~G~~~P 384 (762)
|||+|++++.++...... ....+||+++ ..+|+.|+++.+.+. .|.+.+
T Consensus 314 V~Dva~a~~~al~~~~~~--g~~~i~Nigs---~~~si~el~~~i~~~~~~~g~~~~ 365 (442)
T PLN02572 314 IRDTVRCIEIAIANPAKP--GEFRVFNQFT---EQFSVNELAKLVTKAGEKLGLDVE 365 (442)
T ss_pred HHHHHHHHHHHHhChhhc--CceeEEEeCC---CceeHHHHHHHHHHHHHhhCCCCC
Confidence 999999999998754221 1236899975 469999999999998 764433
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-29 Score=273.00 Aligned_cols=265 Identities=17% Similarity=0.160 Sum_probs=190.5
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++.+ +.+|++++|... ++..+. ...+++++.+|+.++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~-~~~V~~~~r~~~------~~~~~~----------------~~~~~~~~~~Dl~~~ 58 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETT-DWEVYGMDMQTD------RLGDLV----------------NHPRMHFFEGDITIN 58 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCC-CCeEEEEeCcHH------HHHHhc----------------cCCCeEEEeCCCCCC
Confidence 589999999999999999999872 578999988532 111111 124688999999742
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--cccc
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--KVLE 216 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~~i~ 216 (762)
. +.+..+++++|+|||+||.... ..+....+++|+.||.+++++|++. + ++|||+||+.+++.. .++.
T Consensus 59 ~-----~~~~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~-~-~~~v~~SS~~vyg~~~~~~~~ 131 (347)
T PRK11908 59 K-----EWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G-KHLVFPSTSEVYGMCPDEEFD 131 (347)
T ss_pred H-----HHHHHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhc-C-CeEEEEecceeeccCCCcCcC
Confidence 2 2566778899999999996432 3344567899999999999999987 4 799999998665532 2344
Q ss_pred cccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCCCC
Q psy7542 217 EKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPG 295 (762)
Q Consensus 217 E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~pG 295 (762)
|+..+.+..| .....+.|+.||.++|+++..++.. +++++++||+.|||+...+...
T Consensus 132 ee~~~~~~~~----------------------~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~ 189 (347)
T PRK11908 132 PEASPLVYGP----------------------INKPRWIYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYT 189 (347)
T ss_pred ccccccccCc----------------------CCCccchHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCc
Confidence 4322110000 0011267999999999999998765 9999999999999997654210
Q ss_pred CCCCC-CCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHH
Q psy7542 296 WTDNI-NGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIEN 374 (762)
Q Consensus 296 Widn~-~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~ 374 (762)
-.+.. .-...++..+..|....+.+++++.+|||||+|+|++++.++.+.... ..+++||++++. +.+|+.|+++.
T Consensus 190 ~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~D~a~a~~~~~~~~~~~--~~g~~yni~~~~-~~~s~~e~~~~ 266 (347)
T PRK11908 190 PKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDGIDALMKIIENKDGV--ASGKIYNIGNPK-NNHSVRELANK 266 (347)
T ss_pred cccCCcchHHHHHHHHhCCCceEEecCCceeeccccHHHHHHHHHHHHhCcccc--CCCCeEEeCCCC-CCcCHHHHHHH
Confidence 00000 012245556666766667778899999999999999999998865310 136899999851 47999999999
Q ss_pred HHHhhcc
Q psy7542 375 GKDIARN 381 (762)
Q Consensus 375 i~~~~G~ 381 (762)
+.+.+|.
T Consensus 267 i~~~~~~ 273 (347)
T PRK11908 267 MLELAAE 273 (347)
T ss_pred HHHHhcC
Confidence 9998863
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-29 Score=280.67 Aligned_cols=287 Identities=18% Similarity=0.170 Sum_probs=205.2
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+|||||||||||++|++.|+++ +.+|++++|...+. .+.+... ....+++++.+|+.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~--G~~V~~ld~~~~~~--~~~~~~~----------------~~~~~~~~i~~D~~ 177 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMAR--GDSVIVVDNFFTGR--KENVMHH----------------FSNPNFELIRHDVV 177 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHC--cCEEEEEeCCCccc--hhhhhhh----------------ccCCceEEEECCcc
Confidence 6799999999999999999999998 67788888754321 1111111 01246788999987
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccC---ccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--cc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVR---FDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--KV 214 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~---f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~~ 214 (762)
++. +.++|+|||+||... ...+....+++|+.||.+++++|++. +. +|||+||..++++. .+
T Consensus 178 ~~~-----------l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~-g~-r~V~~SS~~VYg~~~~~p 244 (442)
T PLN02206 178 EPI-----------LLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV-GA-RFLLTSTSEVYGDPLQHP 244 (442)
T ss_pred Chh-----------hcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHh-CC-EEEEECChHHhCCCCCCC
Confidence 653 247999999999654 22345678899999999999999997 44 89999998665532 24
Q ss_pred cccccCC--CCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCC
Q psy7542 215 LEEKTYP--PPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKD 291 (762)
Q Consensus 215 i~E~~~~--~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~e 291 (762)
..|+.+. .|..+ .+.|+.||..+|.++..+.+. +++++++||++|||+...
T Consensus 245 ~~E~~~~~~~P~~~--------------------------~s~Y~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~ 298 (442)
T PLN02206 245 QVETYWGNVNPIGV--------------------------RSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMC 298 (442)
T ss_pred CCccccccCCCCCc--------------------------cchHHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCC
Confidence 4554321 12211 168999999999999988765 999999999999998643
Q ss_pred CCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHH
Q psy7542 292 PLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDI 371 (762)
Q Consensus 292 P~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el 371 (762)
...+ .....++..+..+....+++++++.+|+++|+|+|++++.++.... .++||++++ +++|+.|+
T Consensus 299 ~~~~-----~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~~a~e~~~------~g~yNIgs~--~~~sl~El 365 (442)
T PLN02206 299 IDDG-----RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH------VGPFNLGNP--GEFTMLEL 365 (442)
T ss_pred cccc-----chHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHHHHHhcCC------CceEEEcCC--CceeHHHH
Confidence 2111 1123455666666666778899999999999999999999886432 358999998 88999999
Q ss_pred HHHHHHhhccCCCCccc------cccCCccccc----cCCCchhhHHHHHHhhhhhhh
Q psy7542 372 IENGKDIARNKVPLNNV------LWYPGGAMTN----RGYEPVLKRVHNRIKKGFDIF 419 (762)
Q Consensus 372 ~~~i~~~~G~~~P~~~~------~w~p~~~~~~----lG~kP~l~~l~~ki~~~~~~l 419 (762)
++.+.+..|.+..+... .+........ +||+|++ .+.+.+.+.++++
T Consensus 366 ae~i~~~~g~~~~i~~~p~~~~~~~~~~~d~sKa~~~LGw~P~~-~l~egl~~~~~~~ 422 (442)
T PLN02206 366 AKVVQETIDPNAKIEFRPNTEDDPHKRKPDITKAKELLGWEPKV-SLRQGLPLMVKDF 422 (442)
T ss_pred HHHHHHHhCCCCceeeCCCCCCCccccccCHHHHHHHcCCCCCC-CHHHHHHHHHHHH
Confidence 99999998643222110 0111111111 8999987 7777777655443
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=290.85 Aligned_cols=266 Identities=25% Similarity=0.332 Sum_probs=198.3
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++...+.+|++++|... ..++..+.. .....+++++.||++++
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~----~~~~~~~~~-------------~~~~~~v~~~~~Dl~~~ 63 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQS----LSRLEALAA-------------YWGADRVVPLVGDLTEP 63 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcch----HHHHHHHHH-------------hcCCCcEEEEecccCCc
Confidence 5799999999999999999996433679999999542 233332211 00125799999999999
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc-ccccccC
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK-VLEEKTY 220 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~-~i~E~~~ 220 (762)
++|++.++++.+ +++|+||||||..++........++|+.||.+++++|++. ++++|||+||..+++... ..+|+..
T Consensus 64 ~~~~~~~~~~~l-~~~D~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~v~~SS~~v~g~~~~~~~e~~~ 141 (657)
T PRK07201 64 GLGLSEADIAEL-GDIDHVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERL-QAATFHHVSSIAVAGDYEGVFREDDF 141 (657)
T ss_pred cCCcCHHHHHHh-cCCCEEEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhc-CCCeEEEEeccccccCccCccccccc
Confidence 999999888888 8999999999998877777788999999999999999997 689999999987655322 2233211
Q ss_pred CCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCC
Q psy7542 221 PPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNI 300 (762)
Q Consensus 221 ~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~ 300 (762)
+.+ ...+++|+.||+.+|+++.+. . +++++|+||+.|||+... |..++.
T Consensus 142 ~~~--------------------------~~~~~~Y~~sK~~~E~~~~~~-~-g~~~~ilRp~~v~G~~~~---g~~~~~ 190 (657)
T PRK07201 142 DEG--------------------------QGLPTPYHRTKFEAEKLVREE-C-GLPWRVYRPAVVVGDSRT---GEMDKI 190 (657)
T ss_pred hhh--------------------------cCCCCchHHHHHHHHHHHHHc-C-CCcEEEEcCCeeeecCCC---CccccC
Confidence 111 123478999999999999753 2 899999999999998643 333333
Q ss_pred CCchHH---HHHHhc-CCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHH
Q psy7542 301 NGPTGL---LIGAGK-GIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGK 376 (762)
Q Consensus 301 ~gp~~l---i~~~~~-G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~ 376 (762)
.++..+ +..... .....+.+.+....+++||||+|++++.++..... .+++||++++ +++|+.|+++.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~----~g~~~ni~~~--~~~s~~el~~~i~ 264 (657)
T PRK07201 191 DGPYYFFKVLAKLAKLPSWLPMVGPDGGRTNIVPVDYVADALDHLMHKDGR----DGQTFHLTDP--KPQRVGDIYNAFA 264 (657)
T ss_pred CcHHHHHHHHHHhccCCcccccccCCCCeeeeeeHHHHHHHHHHHhcCcCC----CCCEEEeCCC--CCCcHHHHHHHHH
Confidence 333222 222211 11112345556678999999999999998875443 4689999998 8999999999999
Q ss_pred HhhccCC
Q psy7542 377 DIARNKV 383 (762)
Q Consensus 377 ~~~G~~~ 383 (762)
+.+|.+.
T Consensus 265 ~~~g~~~ 271 (657)
T PRK07201 265 RAAGAPP 271 (657)
T ss_pred HHhCCCc
Confidence 9997654
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=274.08 Aligned_cols=286 Identities=21% Similarity=0.268 Sum_probs=204.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+|||||||||||++|++.|++. +++|++++|...... +.....++++.+|++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~--G~~V~~v~r~~~~~~-----------------------~~~~~~~~~~~~Dl~ 74 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAE--GHYIIASDWKKNEHM-----------------------SEDMFCHEFHLVDLR 74 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhC--CCEEEEEEecccccc-----------------------ccccccceEEECCCC
Confidence 6799999999999999999999998 678899998643210 000113567889998
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccC---cc-ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcc-
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVR---FD-DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKV- 214 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~---f~-~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~- 214 (762)
+.+ .+..+++++|+|||+||.+. +. .........|+.|+.+++++|++. ++++|||+||..+++....
T Consensus 75 d~~------~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~-~vk~~V~~SS~~vYg~~~~~ 147 (370)
T PLN02695 75 VME------NCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARIN-GVKRFFYASSACIYPEFKQL 147 (370)
T ss_pred CHH------HHHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHh-CCCEEEEeCchhhcCCcccc
Confidence 754 67777789999999999753 21 223456788999999999999987 7899999999866554321
Q ss_pred -----cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccC
Q psy7542 215 -----LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPI 288 (762)
Q Consensus 215 -----i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~ 288 (762)
+.|+.. .|..| -+.|+.+|..+|+++..++.. |++++++||+.|||+
T Consensus 148 ~~~~~~~E~~~-~p~~p--------------------------~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp 200 (370)
T PLN02695 148 ETNVSLKESDA-WPAEP--------------------------QDAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGP 200 (370)
T ss_pred CcCCCcCcccC-CCCCC--------------------------CCHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCC
Confidence 223210 12211 168999999999999998776 999999999999998
Q ss_pred CCCCCCCCCCC-CCCchHHHHHHhc-CCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcc
Q psy7542 289 WKDPLPGWTDN-INGPTGLLIGAGK-GIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQI 366 (762)
Q Consensus 289 ~~eP~pGWidn-~~gp~~li~~~~~-G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~pi 366 (762)
... |..+ ...+..++..+.. +....+++++++.++++||+|++++++.++.... .++||++++ +++
T Consensus 201 ~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~ai~~~~~~~~------~~~~nv~~~--~~~ 268 (370)
T PLN02695 201 FGT----WKGGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEGVLRLTKSDF------REPVNIGSD--EMV 268 (370)
T ss_pred CCC----ccccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHHHHHHHhccC------CCceEecCC--Cce
Confidence 643 2111 1123445555544 3455678899999999999999999998876532 468999998 899
Q ss_pred cHHHHHHHHHHhhccCCCCcccc-------ccCCcc-cc-ccCCCchhhHHHHHHhhhhh
Q psy7542 367 TWYDIIENGKDIARNKVPLNNVL-------WYPGGA-MT-NRGYEPVLKRVHNRIKKGFD 417 (762)
Q Consensus 367 T~~el~~~i~~~~G~~~P~~~~~-------w~p~~~-~~-~lG~kP~l~~l~~ki~~~~~ 417 (762)
|+.|+++.+.+..|.+.|+.... +..+.. .. .+||+|.+ .+.+.+.+..+
T Consensus 269 s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~d~sk~~~~lgw~p~~-~l~e~i~~~~~ 327 (370)
T PLN02695 269 SMNEMAEIALSFENKKLPIKHIPGPEGVRGRNSDNTLIKEKLGWAPTM-RLKDGLRITYF 327 (370)
T ss_pred eHHHHHHHHHHHhCCCCCceecCCCCCccccccCHHHHHHhcCCCCCC-CHHHHHHHHHH
Confidence 99999999999887654432110 010000 00 07999976 67777766443
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=265.10 Aligned_cols=257 Identities=14% Similarity=0.193 Sum_probs=185.3
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+|||||||||||++|+++|++. +.+|++++|...... ....+.. . .....+++++.+|++
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~--g~~V~~~~r~~~~~~---~~~~~~~---------~---~~~~~~~~~~~~Dl~ 65 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQR--GYTVKATVRDPNDPK---KTEHLLA---------L---DGAKERLHLFKANLL 65 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHC--CCEEEEEEcCCCchh---hHHHHHh---------c---cCCCCceEEEecccc
Confidence 5789999999999999999999998 678888898653211 1111110 0 111257899999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCc--cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCc--ccCCC---
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRF--DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAY--CHPKE--- 212 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f--~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay--~~~~~--- 212 (762)
++. .+..+++++|+|||+||.... ..+....+++|+.||.+++++|++..++++||++||+. +++..
T Consensus 66 ~~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~ 139 (322)
T PLN02662 66 EEG------SFDSVVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLT 139 (322)
T ss_pred Ccc------hHHHHHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCC
Confidence 977 688888999999999997643 23334788999999999999998865788999999964 23221
Q ss_pred --cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCC
Q psy7542 213 --KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIW 289 (762)
Q Consensus 213 --~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~ 289 (762)
.+++|+....|.. .....+.|+.||.++|+++..+.+. +++++++||+.|||+.
T Consensus 140 ~~~~~~E~~~~~p~~-----------------------~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~ 196 (322)
T PLN02662 140 PDVVVDETWFSDPAF-----------------------CEESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPL 196 (322)
T ss_pred CCCcCCcccCCChhH-----------------------hhcccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCC
Confidence 1344442222210 0112257999999999999988765 9999999999999997
Q ss_pred CCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHH
Q psy7542 290 KDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWY 369 (762)
Q Consensus 290 ~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~ 369 (762)
..+.. .....++..+..|.. . .++..+|||+|+|+|++++.++..+.. .+.||++ + .++|+.
T Consensus 197 ~~~~~------~~~~~~~~~~~~~~~--~--~~~~~~~~i~v~Dva~a~~~~~~~~~~-----~~~~~~~-g--~~~s~~ 258 (322)
T PLN02662 197 LQPTL------NTSAEAILNLINGAQ--T--FPNASYRWVDVRDVANAHIQAFEIPSA-----SGRYCLV-E--RVVHYS 258 (322)
T ss_pred CCCCC------CchHHHHHHHhcCCc--c--CCCCCcCeEEHHHHHHHHHHHhcCcCc-----CCcEEEe-C--CCCCHH
Confidence 54321 112233444444432 1 235678999999999999999876543 3478886 4 579999
Q ss_pred HHHHHHHHhhc
Q psy7542 370 DIIENGKDIAR 380 (762)
Q Consensus 370 el~~~i~~~~G 380 (762)
|+++.+.+..+
T Consensus 259 e~~~~i~~~~~ 269 (322)
T PLN02662 259 EVVKILHELYP 269 (322)
T ss_pred HHHHHHHHHCC
Confidence 99999999874
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=267.81 Aligned_cols=301 Identities=13% Similarity=0.149 Sum_probs=199.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++|||||||||||++|+++|++. +.+|++++|..... ..+..+.. + + ...+++++.+|+
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~--g~~V~~~~r~~~~~---~~~~~~~~------~------~-~~~~~~~~~~Dl 68 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQK--GYAVNTTVRDPENQ---KKIAHLRA------L------Q-ELGDLKIFGADL 68 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHC--CCEEEEEECCCCCH---HHHHHHHh------c------C-CCCceEEEEcCC
Confidence 36899999999999999999999998 66888888875321 11111000 0 1 113688999999
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCcc--ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC----
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRFD--DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE---- 212 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~--~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~---- 212 (762)
++++ ++.++++++|+|||+||...+. .+....+++|+.|+.+++++|.+..++++|||+||+.+++..
T Consensus 69 ~d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~ 142 (338)
T PLN00198 69 TDEE------SFEAPIAGCDLVFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSG 142 (338)
T ss_pred CChH------HHHHHHhcCCEEEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCC
Confidence 9876 6788888999999999976543 333457799999999999999886568899999998554421
Q ss_pred --cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCC
Q psy7542 213 --KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIW 289 (762)
Q Consensus 213 --~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~ 289 (762)
.+++|+.... . ..++.. ....++|+.||.++|.++..+++. +++++++||+.|||+.
T Consensus 143 ~~~~~~E~~~~~----~-----------~~~~~~-----~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~ 202 (338)
T PLN00198 143 TGLVMNEKNWTD----V-----------EFLTSE-----KPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS 202 (338)
T ss_pred CCceeccccCCc----h-----------hhhhhc-----CCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence 2344432110 0 000000 011257999999999999998876 9999999999999997
Q ss_pred CCCCCCCCCCCCCchHHHHHHhcCCeEEEee-CC----CcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCC
Q psy7542 290 KDPLPGWTDNINGPTGLLIGAGKGIIRTMYC-DY----STCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDF 364 (762)
Q Consensus 290 ~eP~pGWidn~~gp~~li~~~~~G~l~~i~g-d~----~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~ 364 (762)
..+. ......++..+..|....+.+ ++ +..+||+||||+|++++.++..... .+.|+ +++ .
T Consensus 203 ~~~~------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~V~D~a~a~~~~~~~~~~-----~~~~~-~~~--~ 268 (338)
T PLN00198 203 LTSD------IPSSLSLAMSLITGNEFLINGLKGMQMLSGSISITHVEDVCRAHIFLAEKESA-----SGRYI-CCA--A 268 (338)
T ss_pred ccCC------CCCcHHHHHHHHcCCccccccccccccccCCcceeEHHHHHHHHHHHhhCcCc-----CCcEE-Eec--C
Confidence 5421 111112333444554333333 22 2247999999999999999876533 34675 445 5
Q ss_pred cccHHHHHHHHHHhhcc-CCCCcccc------c-cCCccccccCCCchhhHHHHHHhhhhhh
Q psy7542 365 QITWYDIIENGKDIARN-KVPLNNVL------W-YPGGAMTNRGYEPVLKRVHNRIKKGFDI 418 (762)
Q Consensus 365 piT~~el~~~i~~~~G~-~~P~~~~~------w-~p~~~~~~lG~kP~l~~l~~ki~~~~~~ 418 (762)
++++.|+++.+.+..+. +.|..... + ........+||+|+. .+.+.+.+..++
T Consensus 269 ~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~G~~p~~-~l~~gi~~~~~~ 329 (338)
T PLN00198 269 NTSVPELAKFLIKRYPQYQVPTDFGDFPSKAKLIISSEKLISEGFSFEY-GIEEIYDQTVEY 329 (338)
T ss_pred CCCHHHHHHHHHHHCCCCCCCccccccCCCCccccChHHHHhCCceecC-cHHHHHHHHHHH
Confidence 78999999999988742 22221110 0 000001117999987 688888765444
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=265.17 Aligned_cols=257 Identities=18% Similarity=0.233 Sum_probs=188.2
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.|++|||||||||||++++++|++. +.+|++++|..... +++.++... .....+++++.+|++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~---~~~~~~~~~------------~~~~~~~~~~~~Dl~ 66 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLR--GYTVKATVRDLTDR---KKTEHLLAL------------DGAKERLKLFKADLL 66 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEECCCcch---HHHHHHHhc------------cCCCCceEEEecCCC
Confidence 5789999999999999999999998 67889899975432 222222110 111257899999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCcc--ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCccc--CCC---
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFD--DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCH--PKE--- 212 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~--~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~--~~~--- 212 (762)
++. .+..+++++|+|||+||..... ++....+++|+.||.+++++|++.+++++|||+||..+. +..
T Consensus 67 ~~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~ 140 (322)
T PLN02986 67 EES------SFEQAIEGCDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIE 140 (322)
T ss_pred Ccc------hHHHHHhCCCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCC
Confidence 876 6888888999999999976432 344457899999999999999986578999999997432 211
Q ss_pred --cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCC
Q psy7542 213 --KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIW 289 (762)
Q Consensus 213 --~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~ 289 (762)
..++|+....|. ......+.|+.||.++|.++.++.+. +++++++||+.|||+.
T Consensus 141 ~~~~~~E~~~~~p~-----------------------~~~~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~ 197 (322)
T PLN02986 141 ANDVVDETFFSDPS-----------------------LCRETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPL 197 (322)
T ss_pred CCCCcCcccCCChH-----------------------HhhccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCC
Confidence 123443222111 00112368999999999999998776 9999999999999997
Q ss_pred CCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHH
Q psy7542 290 KDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWY 369 (762)
Q Consensus 290 ~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~ 369 (762)
..|..+ ....++..+..|... . +...+++|+|+|+|++++.++..+.. +++||++ + .++|+.
T Consensus 198 ~~~~~~------~~~~~~~~~~~g~~~--~--~~~~~~~v~v~Dva~a~~~al~~~~~-----~~~yni~-~--~~~s~~ 259 (322)
T PLN02986 198 LQPTLN------FSVELIVDFINGKNL--F--NNRFYRFVDVRDVALAHIKALETPSA-----NGRYIID-G--PIMSVN 259 (322)
T ss_pred CCCCCC------ccHHHHHHHHcCCCC--C--CCcCcceeEHHHHHHHHHHHhcCccc-----CCcEEEe-c--CCCCHH
Confidence 654211 112345555555431 2 24568999999999999999987643 3589995 4 579999
Q ss_pred HHHHHHHHhhc
Q psy7542 370 DIIENGKDIAR 380 (762)
Q Consensus 370 el~~~i~~~~G 380 (762)
|+++.+.+.++
T Consensus 260 e~~~~i~~~~~ 270 (322)
T PLN02986 260 DIIDILRELFP 270 (322)
T ss_pred HHHHHHHHHCC
Confidence 99999999884
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=263.34 Aligned_cols=253 Identities=20% Similarity=0.217 Sum_probs=191.0
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPD 142 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~ 142 (762)
+|||||||||||++|+++|++.+++++|+++.|..... ..+++.++. ...+++++.+|+++++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~-~~~~~~~~~----------------~~~~~~~~~~Dl~~~~ 63 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAG-NLENLADLE----------------DNPRYRFVKGDIGDRE 63 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcch-hhhhhhhhc----------------cCCCcEEEEcCCcCHH
Confidence 59999999999999999999985557899888753211 112222210 1246888999999876
Q ss_pred CCCCHHHHHhhcCC--ccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc---c
Q psy7542 143 LGISAEDRQMLSET--IHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK---V 214 (762)
Q Consensus 143 LGLs~~~l~~l~~~--vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~---~ 214 (762)
++.+++++ +|+|||+||....+ +..+.++++|+.|+.+++++|++...-.++||+||..+++... +
T Consensus 64 ------~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~ 137 (317)
T TIGR01181 64 ------LVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDA 137 (317)
T ss_pred ------HHHHHHhhcCCCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCC
Confidence 77887776 89999999976543 3455688999999999999998852223799999986554322 3
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPL 293 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~ 293 (762)
+.|.....|. +.|+.+|+.+|.++..++.. +++++++||+.|||+...+.
T Consensus 138 ~~e~~~~~~~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~ 188 (317)
T TIGR01181 138 FTETTPLAPS-----------------------------SPYSASKAASDHLVRAYHRTYGLPALITRCSNNYGPYQFPE 188 (317)
T ss_pred cCCCCCCCCC-----------------------------CchHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCcc
Confidence 4454322222 68999999999999987765 99999999999999864321
Q ss_pred CCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHH
Q psy7542 294 PGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIE 373 (762)
Q Consensus 294 pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~ 373 (762)
.....++..+..|....+.++++..++++|+||+|+++..++.... .+++||++++ .++|+.|+++
T Consensus 189 -------~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~~~~-----~~~~~~~~~~--~~~s~~~~~~ 254 (317)
T TIGR01181 189 -------KLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLEKGR-----VGETYNIGGG--NERTNLEVVE 254 (317)
T ss_pred -------cHHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHHcCCC-----CCceEEeCCC--CceeHHHHHH
Confidence 1122455566666655667888899999999999999999886543 3579999998 8899999999
Q ss_pred HHHHhhcc
Q psy7542 374 NGKDIARN 381 (762)
Q Consensus 374 ~i~~~~G~ 381 (762)
.+.+.+|.
T Consensus 255 ~i~~~~~~ 262 (317)
T TIGR01181 255 TILELLGK 262 (317)
T ss_pred HHHHHhCC
Confidence 99999964
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=269.09 Aligned_cols=258 Identities=17% Similarity=0.117 Sum_probs=189.9
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++. +++|++++|..... ..+++..+... .. .....+++++.||+++.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~--G~~V~~~~r~~~~~-~~~~~~~~~~~-----~~-----~~~~~~~~~~~~Dl~d~ 67 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEK--GYEVHGLIRRSSSF-NTQRIEHIYED-----PH-----NVNKARMKLHYGDLTDS 67 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHC--CCEEEEEecCCccc-chhhhhhhhhc-----cc-----cccccceeEEEeccCCH
Confidence 58999999999999999999998 67889999875421 11233322110 00 01124689999999986
Q ss_pred CCCCCHHHHHhhcCC--ccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCc---cEEEEEeCCcccCCC-
Q psy7542 142 DLGISAEDRQMLSET--IHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHL---QLFVYVSTAYCHPKE- 212 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~--vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~l---k~fV~vSSay~~~~~- 212 (762)
+ .+.+++++ +|+|||+||..... +.....+++|+.||.+++++|++. ++ ++|||+||..+++..
T Consensus 68 ~------~l~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~-~~~~~~~~v~~SS~~vyg~~~ 140 (343)
T TIGR01472 68 S------NLRRIIDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTL-GLIKSVKFYQASTSELYGKVQ 140 (343)
T ss_pred H------HHHHHHHhCCCCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHh-CCCcCeeEEEeccHHhhCCCC
Confidence 6 67777774 69999999976532 223456788999999999999986 43 489999998555432
Q ss_pred -cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCC
Q psy7542 213 -KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWK 290 (762)
Q Consensus 213 -~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~ 290 (762)
.+++|+....|. +.|+.||..+|.+++.+++. ++++++.|+..++|+..
T Consensus 141 ~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~ 191 (343)
T TIGR01472 141 EIPQNETTPFYPR-----------------------------SPYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRR 191 (343)
T ss_pred CCCCCCCCCCCCC-----------------------------ChhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCC
Confidence 245565433332 78999999999999998776 89999999999998853
Q ss_pred CCCCCCCCCCCC--chHHHHHHhcCC-eEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCccc
Q psy7542 291 DPLPGWTDNING--PTGLLIGAGKGI-IRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQIT 367 (762)
Q Consensus 291 eP~pGWidn~~g--p~~li~~~~~G~-l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT 367 (762)
.. +... ...++..+..|. ...+.+++++.+||+||+|+|++++.++.+.. .++||++++ .++|
T Consensus 192 ~~------~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~V~D~a~a~~~~~~~~~------~~~yni~~g--~~~s 257 (343)
T TIGR01472 192 GE------NFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDYVEAMWLMLQQDK------PDDYVIATG--ETHS 257 (343)
T ss_pred Cc------cccchHHHHHHHHHHcCCCCceeeCCCccccCceeHHHHHHHHHHHHhcCC------CccEEecCC--Ccee
Confidence 21 1111 122334455564 34566889999999999999999999887542 258999999 8999
Q ss_pred HHHHHHHHHHhhccC
Q psy7542 368 WYDIIENGKDIARNK 382 (762)
Q Consensus 368 ~~el~~~i~~~~G~~ 382 (762)
+.|+++.+.+..|.+
T Consensus 258 ~~e~~~~i~~~~g~~ 272 (343)
T TIGR01472 258 VREFVEVSFEYIGKT 272 (343)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999998754
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >KOG1502|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-28 Score=262.21 Aligned_cols=261 Identities=19% Similarity=0.262 Sum_probs=205.0
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+++|+|||||||||++|+++||.+ |++|...+|........+-|.++ +...+++..+.+|+.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~r--GY~V~gtVR~~~~~k~~~~L~~l---------------~~a~~~l~l~~aDL~ 67 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSR--GYTVRGTVRDPEDEKKTEHLRKL---------------EGAKERLKLFKADLL 67 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhC--CCEEEEEEcCcchhhhHHHHHhc---------------ccCcccceEEecccc
Confidence 5789999999999999999999999 78899999987653322233332 334567999999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCcccc--HHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC-----
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFDDY--MQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE----- 212 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~--l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~----- 212 (762)
+++ .+...+++||.|||+|+.+.++.. -++.++.+|.||.++|++|++.+.++|||++||+.+....
T Consensus 68 d~~------sf~~ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~ 141 (327)
T KOG1502|consen 68 DEG------SFDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIG 141 (327)
T ss_pred ccc------hHHHHHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCC
Confidence 998 799999999999999999988643 4579999999999999999999779999999998543222
Q ss_pred --cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCC
Q psy7542 213 --KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIW 289 (762)
Q Consensus 213 --~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~ 289 (762)
..++|+.+.+ ++...... +.|..||.+||+...+++++ +++.+.+-|+.|+||.
T Consensus 142 ~~~vvdE~~wsd---------------~~~~~~~~--------~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~ 198 (327)
T KOG1502|consen 142 ENSVVDEESWSD---------------LDFCRCKK--------LWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPG 198 (327)
T ss_pred CCcccccccCCc---------------HHHHHhhH--------HHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCC
Confidence 2445543321 11111111 68999999999999999998 8999999999999998
Q ss_pred CCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHH
Q psy7542 290 KDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWY 369 (762)
Q Consensus 290 ~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~ 369 (762)
-.| ..+.....+....+|...... +....+|+|+|||+|.+.|.+++.. .+.|.|.+. ..++.
T Consensus 199 l~~------~l~~s~~~~l~~i~G~~~~~~---n~~~~~VdVrDVA~AHv~a~E~~~a-----~GRyic~~~---~~~~~ 261 (327)
T KOG1502|consen 199 LQP------SLNSSLNALLKLIKGLAETYP---NFWLAFVDVRDVALAHVLALEKPSA-----KGRYICVGE---VVSIK 261 (327)
T ss_pred ccc------ccchhHHHHHHHHhcccccCC---CCceeeEeHHHHHHHHHHHHcCccc-----CceEEEecC---cccHH
Confidence 765 223444566777777655433 3344599999999999999999887 478988886 45699
Q ss_pred HHHHHHHHhhccCCC
Q psy7542 370 DIIENGKDIARNKVP 384 (762)
Q Consensus 370 el~~~i~~~~G~~~P 384 (762)
|+++.+.+.+ ..++
T Consensus 262 ei~~~l~~~~-P~~~ 275 (327)
T KOG1502|consen 262 EIADILRELF-PDYP 275 (327)
T ss_pred HHHHHHHHhC-CCCC
Confidence 9999999998 5544
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=266.12 Aligned_cols=315 Identities=16% Similarity=0.215 Sum_probs=214.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcc-hHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKN-SRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~-~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++++|||||||||||++|+++|++. +.+|++++|...... ..+++.+.. .....++.++.+|
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~--g~~V~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~D 66 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLA--GYKVVVIDNLDNSSEEALRRVKELA--------------GDLGDNLVFHKVD 66 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCCcchHHHHHHHHHhh--------------cccCccceEEecC
Confidence 46789999999999999999999998 678888887543211 112222211 1112468899999
Q ss_pred cCCCCCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccC--
Q psy7542 138 VAVPDLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHP-- 210 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~-- 210 (762)
++++. ++..+++ ++|+|||+||..... ......+++|+.|+.+++++|++. ++++||++||+.+++
T Consensus 67 ~~~~~------~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~vyg~~ 139 (352)
T PLN02240 67 LRDKE------ALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKH-GCKKLVFSSSATVYGQP 139 (352)
T ss_pred cCCHH------HHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEccHHHhCCC
Confidence 98865 6666654 689999999975432 345568999999999999999886 788999999985544
Q ss_pred CCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--CCCEEEEeeeeeccC
Q psy7542 211 KEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--GMPCMILRPSIIIPI 288 (762)
Q Consensus 211 ~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--glpv~IvRPs~V~G~ 288 (762)
...+++|+....|. +.|+.||..+|++++.++.. +++++++|++.|||+
T Consensus 140 ~~~~~~E~~~~~~~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~ 190 (352)
T PLN02240 140 EEVPCTEEFPLSAT-----------------------------NPYGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGA 190 (352)
T ss_pred CCCCCCCCCCCCCC-----------------------------CHHHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCC
Confidence 23356665433222 68999999999999987643 789999999999997
Q ss_pred CCCCCCCCCCCC--CCchHHHHHHhcCCe--EEEee------CCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 289 WKDPLPGWTDNI--NGPTGLLIGAGKGII--RTMYC------DYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 289 ~~eP~pGWidn~--~gp~~li~~~~~G~l--~~i~g------d~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
.....-|+..+. .....++..+..+.. ..+.+ ++.+.+++|+++|+|++++.++..........+++||+
T Consensus 191 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~D~a~a~~~a~~~~~~~~~~~~~~yni 270 (352)
T PLN02240 191 HPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDGTGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNL 270 (352)
T ss_pred CccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCCCCCCCEEEeeEEHHHHHHHHHHHHhhhhhccCCCCceEEc
Confidence 643222221110 011123344444432 22333 67889999999999999998886531111113579999
Q ss_pred cCCCCCcccHHHHHHHHHHhhccCCCCccccccCCc--------c-ccc-cCCCchhhHHHHHHhhhhhhhcccccCcee
Q psy7542 359 TANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGG--------A-MTN-RGYEPVLKRVHNRIKKGFDIFEYYTKNSWS 428 (762)
Q Consensus 359 ~s~~~~piT~~el~~~i~~~~G~~~P~~~~~w~p~~--------~-~~~-lG~kP~l~~l~~ki~~~~~~l~~f~~~~w~ 428 (762)
+++ +++|+.|+++.+.+..|.+.|+......+.. . ... +||+|+. .+.+.+.+ .++|+..+.|.
T Consensus 271 ~~~--~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~-~l~~~l~~---~~~~~~~~~~~ 344 (352)
T PLN02240 271 GTG--KGTSVLEMVAAFEKASGKKIPLKLAPRRPGDAEEVYASTEKAEKELGWKAKY-GIDEMCRD---QWNWASKNPYG 344 (352)
T ss_pred cCC--CcEeHHHHHHHHHHHhCCCCCceeCCCCCCChhhhhcCHHHHHHHhCCCCCC-CHHHHHHH---HHHHHHhCccc
Confidence 998 8999999999999999765554322111110 0 111 7999986 67777766 44455556666
Q ss_pred eec
Q psy7542 429 FKN 431 (762)
Q Consensus 429 Fd~ 431 (762)
|..
T Consensus 345 ~~~ 347 (352)
T PLN02240 345 YGS 347 (352)
T ss_pred cCC
Confidence 543
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=266.87 Aligned_cols=254 Identities=17% Similarity=0.193 Sum_probs=185.3
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++.+.. .|+++.|..... ..+++..+ ....+++++.+|+++.
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~-~v~~~~~~~~~~-~~~~~~~~----------------~~~~~~~~~~~Dl~d~ 62 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAG-NLESLADV----------------SDSERYVFEHADICDR 62 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCC-eEEEecCCCccc-hHHHHHhc----------------ccCCceEEEEecCCCH
Confidence 57999999999999999999998422 355555432111 11111111 0124678899999987
Q ss_pred CCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHc--------CCccEEEEEeCCcc
Q psy7542 142 DLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQM--------IHLQLFVYVSTAYC 208 (762)
Q Consensus 142 ~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~--------~~lk~fV~vSSay~ 208 (762)
+ ++..+++ ++|+|||+||..... ......+++|+.||.+++++|++. +++++|||+||..+
T Consensus 63 ~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~v 136 (352)
T PRK10084 63 A------ELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEV 136 (352)
T ss_pred H------HHHHHHHhcCCCEEEECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhh
Confidence 5 6777665 489999999976532 335678999999999999999874 24679999999855
Q ss_pred cCCCc------------ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CC
Q psy7542 209 HPKEK------------VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GM 275 (762)
Q Consensus 209 ~~~~~------------~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-gl 275 (762)
++... +++|+....| -+.|+.||+.+|+++..+++. ++
T Consensus 137 yg~~~~~~~~~~~~~~~~~~E~~~~~p-----------------------------~~~Y~~sK~~~E~~~~~~~~~~g~ 187 (352)
T PRK10084 137 YGDLPHPDEVENSEELPLFTETTAYAP-----------------------------SSPYSASKASSDHLVRAWLRTYGL 187 (352)
T ss_pred cCCCCccccccccccCCCccccCCCCC-----------------------------CChhHHHHHHHHHHHHHHHHHhCC
Confidence 54321 1223221111 278999999999999998776 99
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
+++++||+.|||+...+. .....++..+..|....+++++++.+|+|+|+|+|++++.++.... .+++
T Consensus 188 ~~vilr~~~v~Gp~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v~D~a~a~~~~l~~~~-----~~~~ 255 (352)
T PRK10084 188 PTIVTNCSNNYGPYHFPE-------KLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALYKVVTEGK-----AGET 255 (352)
T ss_pred CEEEEeccceeCCCcCcc-------chHHHHHHHHhcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHhcCC-----CCce
Confidence 999999999999864321 1122344555556555677889999999999999999998887532 3689
Q ss_pred EEecCCCCCcccHHHHHHHHHHhhccC
Q psy7542 356 INLTANKDFQITWYDIIENGKDIARNK 382 (762)
Q Consensus 356 yNi~s~~~~piT~~el~~~i~~~~G~~ 382 (762)
||++++ +++|+.|+++.+.+..|..
T Consensus 256 yni~~~--~~~s~~~~~~~i~~~~~~~ 280 (352)
T PRK10084 256 YNIGGH--NEKKNLDVVLTICDLLDEI 280 (352)
T ss_pred EEeCCC--CcCcHHHHHHHHHHHhccc
Confidence 999998 8899999999999988653
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-28 Score=288.62 Aligned_cols=272 Identities=16% Similarity=0.134 Sum_probs=199.3
Q ss_pred hhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEE
Q psy7542 54 RISATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIP 133 (762)
Q Consensus 54 ~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~ 133 (762)
+...+.++|+|||||||||||++|+++|++.+ +++|++++|..... ... ....++++
T Consensus 308 ~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~-g~~V~~l~r~~~~~------~~~----------------~~~~~~~~ 364 (660)
T PRK08125 308 PACSAKRRTRVLILGVNGFIGNHLTERLLRDD-NYEVYGLDIGSDAI------SRF----------------LGHPRFHF 364 (660)
T ss_pred chhhhhcCCEEEEECCCchHHHHHHHHHHhCC-CcEEEEEeCCchhh------hhh----------------cCCCceEE
Confidence 34567789999999999999999999999862 57899999865321 000 01246889
Q ss_pred EEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccC
Q psy7542 134 INGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHP 210 (762)
Q Consensus 134 V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~ 210 (762)
+.||++++. ..++.+++++|+|||+||.... .......+++|+.||.+++++|++. + ++|||+||+++++
T Consensus 365 ~~gDl~d~~-----~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~-~-~~~V~~SS~~vyg 437 (660)
T PRK08125 365 VEGDISIHS-----EWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKY-N-KRIIFPSTSEVYG 437 (660)
T ss_pred EeccccCcH-----HHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhc-C-CeEEEEcchhhcC
Confidence 999999854 1246677899999999997653 3344568899999999999999997 4 7999999986665
Q ss_pred C--CcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeecc
Q psy7542 211 K--EKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIP 287 (762)
Q Consensus 211 ~--~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G 287 (762)
. ..+++|+....+..|. ....+.|+.||.++|+++..+++. +++++++||++|||
T Consensus 438 ~~~~~~~~E~~~~~~~~p~----------------------~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyG 495 (660)
T PRK08125 438 MCTDKYFDEDTSNLIVGPI----------------------NKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMG 495 (660)
T ss_pred CCCCCCcCccccccccCCC----------------------CCCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeC
Confidence 3 2345665432111110 001157999999999999998766 99999999999999
Q ss_pred CCCCCCCCCCCCCCC-chHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCC-c
Q psy7542 288 IWKDPLPGWTDNING-PTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDF-Q 365 (762)
Q Consensus 288 ~~~eP~pGWidn~~g-p~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~-p 365 (762)
+.+.+.........+ ...++..+..|....+.+++++.+|+|+|+|+|++++.++.+.... ..+++||++++ + +
T Consensus 496 p~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~Dva~a~~~~l~~~~~~--~~g~iyni~~~--~~~ 571 (660)
T PRK08125 496 PRLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIEALFRIIENKDNR--CDGQIINIGNP--DNE 571 (660)
T ss_pred CCccccccccccccchHHHHHHHhcCCCCeEEeCCCceeeceeeHHHHHHHHHHHHhccccc--cCCeEEEcCCC--CCc
Confidence 975421110000001 2235555666766667888999999999999999999998764210 13689999987 4 6
Q ss_pred ccHHHHHHHHHHhhcc
Q psy7542 366 ITWYDIIENGKDIARN 381 (762)
Q Consensus 366 iT~~el~~~i~~~~G~ 381 (762)
+|+.|+++.+.+..|.
T Consensus 572 ~s~~el~~~i~~~~g~ 587 (660)
T PRK08125 572 ASIRELAEMLLASFEK 587 (660)
T ss_pred eeHHHHHHHHHHHhcc
Confidence 9999999999999864
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-28 Score=262.32 Aligned_cols=295 Identities=14% Similarity=0.164 Sum_probs=203.9
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+|+||||||+||||++|+++|++. +.+|++++|..... +....+... .....+++++.+|++
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~--G~~V~~~~r~~~~~---~~~~~~~~~------------~~~~~~~~~~~~D~~ 66 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFR--GYTINATVRDPKDR---KKTDHLLAL------------DGAKERLKLFKADLL 66 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHC--CCEEEEEEcCCcch---hhHHHHHhc------------cCCCCceEEEeCCCC
Confidence 4789999999999999999999998 66788888865421 111111100 111247889999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC-----
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK----- 211 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~----- 211 (762)
+++ ++.++++++|+|||+||..... +.+...+++|+.|+.+++++|.+..+.++||++||..++..
T Consensus 67 d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~ 140 (325)
T PLN02989 67 DEG------SFELAIDGCETVFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKL 140 (325)
T ss_pred Cch------HHHHHHcCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccC
Confidence 876 6888888999999999975432 34567889999999999999988545789999999744322
Q ss_pred --CcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccC
Q psy7542 212 --EKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPI 288 (762)
Q Consensus 212 --~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~ 288 (762)
..+++|+....|... ....+.|+.||..+|+++..+.+. +++++++||+.|||+
T Consensus 141 ~~~~~~~E~~~~~p~~~-----------------------~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp 197 (325)
T PLN02989 141 GPNDVVDETFFTNPSFA-----------------------EERKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGP 197 (325)
T ss_pred CCCCccCcCCCCchhHh-----------------------cccccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCC
Confidence 123555533322210 011267999999999999998776 999999999999999
Q ss_pred CCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccH
Q psy7542 289 WKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITW 368 (762)
Q Consensus 289 ~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~ 368 (762)
...+..+ ....++..+..|.... + ...++|++|+|+|++++.++..... +++||++ + .++|+
T Consensus 198 ~~~~~~~------~~~~~i~~~~~~~~~~--~--~~~r~~i~v~Dva~a~~~~l~~~~~-----~~~~ni~-~--~~~s~ 259 (325)
T PLN02989 198 ILQPTLN------FSVAVIVELMKGKNPF--N--TTHHRFVDVRDVALAHVKALETPSA-----NGRYIID-G--PVVTI 259 (325)
T ss_pred CCCCCCC------chHHHHHHHHcCCCCC--C--CcCcCeeEHHHHHHHHHHHhcCccc-----CceEEEe-c--CCCCH
Confidence 7654211 1223444555554321 2 3457999999999999999876543 3589995 5 57999
Q ss_pred HHHHHHHHHhhccCC-CCcc-cc-------ccCCcc-ccccCCCchhhHHHHHHhhhhhhh
Q psy7542 369 YDIIENGKDIARNKV-PLNN-VL-------WYPGGA-MTNRGYEPVLKRVHNRIKKGFDIF 419 (762)
Q Consensus 369 ~el~~~i~~~~G~~~-P~~~-~~-------w~p~~~-~~~lG~kP~l~~l~~ki~~~~~~l 419 (762)
.|+++.+.+.++... +... .. ..++.. ...+||.|.. .+.+.+.+.++++
T Consensus 260 ~ei~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~p~~-~l~~gi~~~~~~~ 319 (325)
T PLN02989 260 KDIENVLREFFPDLCIADRNEDITELNSVTFNVCLDKVKSLGIIEFT-PTETSLRDTVLSL 319 (325)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCcccccccCcCCCHHHHHHcCCCCCC-CHHHHHHHHHHHH
Confidence 999999999985221 1000 00 011111 1128998887 6888887755543
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-28 Score=264.90 Aligned_cols=291 Identities=16% Similarity=0.196 Sum_probs=200.2
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+|||||||||||++|+++|++. +.+|.+++|...... ...+..+ .....+++++.+|++
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~--G~~V~~~~r~~~~~~-~~~~~~~---------------~~~~~~~~~~~~Dl~ 70 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLER--GYTVKGTVRNPDDPK-NTHLREL---------------EGGKERLILCKADLQ 70 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeCCchhhh-HHHHHHh---------------hCCCCcEEEEecCcC
Confidence 6789999999999999999999998 678899998643211 0111111 111246889999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCc-ccCC--C---c
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAY-CHPK--E---K 213 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay-~~~~--~---~ 213 (762)
++. ++.++++++|+|||+||... ......+++|+.||.+++++|++. ++++|||+||.. +++. . .
T Consensus 71 d~~------~~~~~~~~~d~Vih~A~~~~--~~~~~~~~~nv~gt~~ll~aa~~~-~v~r~V~~SS~~avyg~~~~~~~~ 141 (342)
T PLN02214 71 DYE------ALKAAIDGCDGVFHTASPVT--DDPEQMVEPAVNGAKFVINAAAEA-KVKRVVITSSIGAVYMDPNRDPEA 141 (342)
T ss_pred ChH------HHHHHHhcCCEEEEecCCCC--CCHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEeccceeeeccCCCCCCc
Confidence 876 78888899999999999753 345678999999999999999987 788999999962 3322 1 1
Q ss_pred ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCC
Q psy7542 214 VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDP 292 (762)
Q Consensus 214 ~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP 292 (762)
.++|+.... .+ ......+.|+.||..+|+++..+.+. |++++++||+.|||+...+
T Consensus 142 ~~~E~~~~~-~~----------------------~~~~p~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~ 198 (342)
T PLN02214 142 VVDESCWSD-LD----------------------FCKNTKNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQP 198 (342)
T ss_pred ccCcccCCC-hh----------------------hccccccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCC
Confidence 245543211 00 00011268999999999999998776 9999999999999997543
Q ss_pred CCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHH
Q psy7542 293 LPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDII 372 (762)
Q Consensus 293 ~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~ 372 (762)
. .......+..+..|.... . ++..+|||+|+|+|++++.++.+... ++.||++++ ++++.|++
T Consensus 199 ~------~~~~~~~~~~~~~g~~~~-~--~~~~~~~i~V~Dva~a~~~al~~~~~-----~g~yn~~~~---~~~~~el~ 261 (342)
T PLN02214 199 T------INASLYHVLKYLTGSAKT-Y--ANLTQAYVDVRDVALAHVLVYEAPSA-----SGRYLLAES---ARHRGEVV 261 (342)
T ss_pred C------CCchHHHHHHHHcCCccc-C--CCCCcCeeEHHHHHHHHHHHHhCccc-----CCcEEEecC---CCCHHHHH
Confidence 1 111112223344554332 2 35578999999999999999987543 458999864 58999999
Q ss_pred HHHHHhhcc-CCCCcccc---------ccCCccccccCCCchhhHHHHHHhhhhhhh
Q psy7542 373 ENGKDIARN-KVPLNNVL---------WYPGGAMTNRGYEPVLKRVHNRIKKGFDIF 419 (762)
Q Consensus 373 ~~i~~~~G~-~~P~~~~~---------w~p~~~~~~lG~kP~l~~l~~ki~~~~~~l 419 (762)
+.+.+.++. ..|..... ++.......+||+|. .+.+.+.+..+++
T Consensus 262 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~LG~~p~--~lee~i~~~~~~~ 316 (342)
T PLN02214 262 EILAKLFPEYPLPTKCKDEKNPRAKPYKFTNQKIKDLGLEFT--STKQSLYDTVKSL 316 (342)
T ss_pred HHHHHHCCCCCCCCCCccccCCCCCccccCcHHHHHcCCccc--CHHHHHHHHHHHH
Confidence 999998842 22221110 111111112888883 7777777755443
|
|
| >KOG0747|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-29 Score=255.67 Aligned_cols=292 Identities=21% Similarity=0.259 Sum_probs=220.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+..++|+||||.||||++.+..+....|+.++.+++.-.-... ..-+++. ....+-.++.+|+
T Consensus 4 ~~~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~-~~~l~~~----------------~n~p~ykfv~~di 66 (331)
T KOG0747|consen 4 YKEKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSN-LKNLEPV----------------RNSPNYKFVEGDI 66 (331)
T ss_pred CccceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccc-cchhhhh----------------ccCCCceEeeccc
Confidence 3458999999999999999999999988887777765332221 1222221 2246788999999
Q ss_pred CCCCCCCCHHHHHhh--cCCccEEEEcccccCcc----ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCC--cccC
Q psy7542 139 AVPDLGISAEDRQML--SETIHIVYHIAATVRFD----DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA--YCHP 210 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l--~~~vDiViH~AA~v~f~----~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSa--y~~~ 210 (762)
.+... +..+ .+++|.|+|.||....+ +++ ++...|+.+|..|++.++..+++++|||+||. |+.+
T Consensus 67 ~~~~~------~~~~~~~~~id~vihfaa~t~vd~s~~~~~-~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds 139 (331)
T KOG0747|consen 67 ADADL------VLYLFETEEIDTVIHFAAQTHVDRSFGDSF-EFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDS 139 (331)
T ss_pred cchHH------HHhhhccCchhhhhhhHhhhhhhhhcCchH-HHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCc
Confidence 98762 3332 34799999999987644 343 57788999999999999999999999999998 5444
Q ss_pred CCcccc-cccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccC
Q psy7542 211 KEKVLE-EKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPI 288 (762)
Q Consensus 211 ~~~~i~-E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~ 288 (762)
+..... |...+.|. |+|+.||++||++++.+... |+|++++|.++||||
T Consensus 140 ~~~~~~~E~s~~nPt-----------------------------npyAasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP 190 (331)
T KOG0747|consen 140 DEDAVVGEASLLNPT-----------------------------NPYAASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGP 190 (331)
T ss_pred cccccccccccCCCC-----------------------------CchHHHHHHHHHHHHHHhhccCCcEEEEeccCccCC
Confidence 444444 66666555 88999999999999999988 999999999999999
Q ss_pred CCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccH
Q psy7542 289 WKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITW 368 (762)
Q Consensus 289 ~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~ 368 (762)
.+-|. .....|+..+..+....+.|++.+.+++++|+|+++|+-+++.+.. .++||||++. .+.+.
T Consensus 191 ~q~~~-------klipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ea~~~v~~Kg~-----~geIYNIgtd--~e~~~ 256 (331)
T KOG0747|consen 191 NQYPE-------KLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAVLEKGE-----LGEIYNIGTD--DEMRV 256 (331)
T ss_pred CcChH-------HHhHHHHHHHHhCCCcceecCcccceeeEeHHHHHHHHHHHHhcCC-----ccceeeccCc--chhhH
Confidence 87642 1222455656677777899999999999999999999999998843 3899999998 88999
Q ss_pred HHHHHHHHHhhccCCCCc----cccccCCcc------------ccccCCCchhhHHHHHHhhhhhh
Q psy7542 369 YDIIENGKDIARNKVPLN----NVLWYPGGA------------MTNRGYEPVLKRVHNRIKKGFDI 418 (762)
Q Consensus 369 ~el~~~i~~~~G~~~P~~----~~~w~p~~~------------~~~lG~kP~l~~l~~ki~~~~~~ 418 (762)
.|+++.+.+.++...|-. ....+++-. +..+||+|.. .+.+++++.++.
T Consensus 257 ~~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd~Ry~~~~eKik~LGw~~~~-p~~eGLrktie~ 321 (331)
T KOG0747|consen 257 IDLAKDICELFEKRLPNIDTEPFIFFVEDRPYNDLRYFLDDEKIKKLGWRPTT-PWEEGLRKTIEW 321 (331)
T ss_pred HHHHHHHHHHHHHhccCCCCCCcceecCCCCcccccccccHHHHHhcCCcccC-cHHHHHHHHHHH
Confidence 999999999885433211 111111111 1119999988 488888875554
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-28 Score=265.16 Aligned_cols=300 Identities=15% Similarity=0.164 Sum_probs=207.6
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
|++||+|||||||||||++|++.|++. +.+|++++|....... ..+.+ ....++.++.+|
T Consensus 1 ~~~~k~ilItGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~---~~~~~---------------~~~~~~~~~~~D 60 (349)
T TIGR02622 1 FWQGKKVLVTGHTGFKGSWLSLWLLEL--GAEVYGYSLDPPTSPN---LFELL---------------NLAKKIEDHFGD 60 (349)
T ss_pred CcCCCEEEEECCCChhHHHHHHHHHHC--CCEEEEEeCCCccchh---HHHHH---------------hhcCCceEEEcc
Confidence 468899999999999999999999998 6678888887543211 11100 012367789999
Q ss_pred cCCCCCCCCHHHHHhhcCC--ccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC
Q psy7542 138 VAVPDLGISAEDRQMLSET--IHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE 212 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~--vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~ 212 (762)
+++++ ++..++++ +|+|||+||..... ......+++|+.|+.+++++|++.+.+++||++||..+++..
T Consensus 61 l~~~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~ 134 (349)
T TIGR02622 61 IRDAA------KLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRND 134 (349)
T ss_pred CCCHH------HHHHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCC
Confidence 99865 67777764 69999999965332 234568899999999999999887447899999998555432
Q ss_pred ---cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--------CCCEEEEe
Q psy7542 213 ---KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--------GMPCMILR 281 (762)
Q Consensus 213 ---~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--------glpv~IvR 281 (762)
.++.|.....|. +.|+.||..+|.+++.++.. +++++++|
T Consensus 135 ~~~~~~~e~~~~~p~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR 185 (349)
T TIGR02622 135 EWVWGYRETDPLGGH-----------------------------DPYSSSKACAELVIASYRSSFFGVANFHGIKIASAR 185 (349)
T ss_pred CCCCCCccCCCCCCC-----------------------------CcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEc
Confidence 134444322222 68999999999999887642 79999999
Q ss_pred eeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 282 PSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 282 Ps~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
|+.|||+.... .. .....++..+..|.... .+++++.+||+||||+|++++.++..........+++||++++
T Consensus 186 ~~~vyGp~~~~-----~~-~~~~~~~~~~~~g~~~~-~~~g~~~rd~i~v~D~a~a~~~~~~~~~~~~~~~~~~yni~s~ 258 (349)
T TIGR02622 186 AGNVIGGGDWA-----ED-RLIPDVIRAFSSNKIVI-IRNPDATRPWQHVLEPLSGYLLLAEKLFTGQAEFAGAWNFGPR 258 (349)
T ss_pred cCcccCCCcch-----hh-hhhHHHHHHHhcCCCeE-ECCCCcccceeeHHHHHHHHHHHHHHHhhcCccccceeeeCCC
Confidence 99999985311 00 11234555566665544 4678999999999999999998876532110012479999985
Q ss_pred CCCcccHHHHHHHHHHhhcc-CCCCcc--ccccCCc------ccc---c-cCCCchhhHHHHHHhhhhhhhc
Q psy7542 362 KDFQITWYDIIENGKDIARN-KVPLNN--VLWYPGG------AMT---N-RGYEPVLKRVHNRIKKGFDIFE 420 (762)
Q Consensus 362 ~~~piT~~el~~~i~~~~G~-~~P~~~--~~w~p~~------~~~---~-lG~kP~l~~l~~ki~~~~~~l~ 420 (762)
..++++..|+++.+.+..+. ..++.. ....+.. ... . +||+|+. ++.+.+.+..+++.
T Consensus 259 ~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~~-~l~~gi~~~i~w~~ 329 (349)
T TIGR02622 259 ASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHEARLLKLDSSKARTLLGWHPRW-GLEEAVSRTVDWYK 329 (349)
T ss_pred cccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCcccceeecCHHHHHHHhCCCCCC-CHHHHHHHHHHHHH
Confidence 33689999999999887642 112211 0011110 111 1 7999988 88888877655544
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-28 Score=264.60 Aligned_cols=298 Identities=15% Similarity=0.200 Sum_probs=197.2
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
..++|||||||||||++|+++|++. +.+|++++|..... +++..+... +....+++++.+|++
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~--G~~V~~~~r~~~~~---~~~~~~~~~------------~~~~~~~~~v~~Dl~ 66 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLER--GYTVRATVRDPANV---KKVKHLLDL------------PGATTRLTLWKADLA 66 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHC--CCEEEEEEcCcchh---HHHHHHHhc------------cCCCCceEEEEecCC
Confidence 4578999999999999999999998 67889888864321 122221100 111236889999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCcc--ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC---cc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFD--DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE---KV 214 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~--~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~---~~ 214 (762)
+++ .+..+++++|+|||+||..... .+....+++|+.||.+++++|++...+++|||+||+.+.... .+
T Consensus 67 d~~------~~~~~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~ 140 (351)
T PLN02650 67 VEG------SFDDAIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKP 140 (351)
T ss_pred Chh------hHHHHHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCC
Confidence 876 6788888999999999976532 233468899999999999999987447899999998543321 12
Q ss_pred -cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCC
Q psy7542 215 -LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDP 292 (762)
Q Consensus 215 -i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP 292 (762)
++|+... +.+. +.......+.|+.||..+|.++..+++. |++++++||++|||+...+
T Consensus 141 ~~~E~~~~-~~~~-------------------~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~ 200 (351)
T PLN02650 141 VYDEDCWS-DLDF-------------------CRRKKMTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFIST 200 (351)
T ss_pred ccCcccCC-chhh-------------------hhccccccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCC
Confidence 2443111 0000 0000001157999999999999998876 9999999999999997542
Q ss_pred CCCCCCCCCCchHHHHH--HhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHH
Q psy7542 293 LPGWTDNINGPTGLLIG--AGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYD 370 (762)
Q Consensus 293 ~pGWidn~~gp~~li~~--~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~e 370 (762)
. .+..++.. ...|.... .+. ...+||++|+|+|++++.++..... +++| ++++ .++|+.|
T Consensus 201 ~--------~~~~~~~~~~~~~~~~~~-~~~-~~~r~~v~V~Dva~a~~~~l~~~~~-----~~~~-i~~~--~~~s~~e 262 (351)
T PLN02650 201 S--------MPPSLITALSLITGNEAH-YSI-IKQGQFVHLDDLCNAHIFLFEHPAA-----EGRY-ICSS--HDATIHD 262 (351)
T ss_pred C--------CCccHHHHHHHhcCCccc-cCc-CCCcceeeHHHHHHHHHHHhcCcCc-----CceE-EecC--CCcCHHH
Confidence 1 11222221 12232221 222 2347999999999999999876543 3478 4555 6799999
Q ss_pred HHHHHHHhhccC-CCCcccc-------ccCCcc-ccccCCCchhhHHHHHHhhhhhhh
Q psy7542 371 IIENGKDIARNK-VPLNNVL-------WYPGGA-MTNRGYEPVLKRVHNRIKKGFDIF 419 (762)
Q Consensus 371 l~~~i~~~~G~~-~P~~~~~-------w~p~~~-~~~lG~kP~l~~l~~ki~~~~~~l 419 (762)
+++.+.+..+.. .|..... +..... ...+||+|+. .+.+.+.+.++++
T Consensus 263 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~-~l~egl~~~i~~~ 319 (351)
T PLN02650 263 LAKMLREKYPEYNIPARFPGIDEDLKSVEFSSKKLTDLGFTFKY-SLEDMFDGAIETC 319 (351)
T ss_pred HHHHHHHhCcccCCCCCCCCcCcccccccCChHHHHHhCCCCCC-CHHHHHHHHHHHH
Confidence 999999987421 2211100 000000 1118999987 6888887755543
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=252.37 Aligned_cols=249 Identities=24% Similarity=0.312 Sum_probs=193.8
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPD 142 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~ 142 (762)
+|||||||||||++|+++|++. +.+|+.+.|....... . ...+.++.+|+++.+
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~--g~~V~~~~r~~~~~~~-----------------------~-~~~~~~~~~d~~~~~ 55 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA--GHDVRGLDRLRDGLDP-----------------------L-LSGVEFVVLDLTDRD 55 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC--CCeEEEEeCCCccccc-----------------------c-ccccceeeecccchH
Confidence 4999999999999999999998 7788999987543211 1 146788999999875
Q ss_pred CCCCHHHHHhhcCCc-cEEEEcccccCcccc----HHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC---cc
Q psy7542 143 LGISAEDRQMLSETI-HIVYHIAATVRFDDY----MQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE---KV 214 (762)
Q Consensus 143 LGLs~~~l~~l~~~v-DiViH~AA~v~f~~~----l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~---~~ 214 (762)
....+.+.+ |+|||+||....... ......+|+.||.+++++|++. ++++|||.||.++.... .+
T Consensus 56 ------~~~~~~~~~~d~vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~-~~~~~v~~ss~~~~~~~~~~~~ 128 (314)
T COG0451 56 ------LVDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAA-GVKRFVFASSVSVVYGDPPPLP 128 (314)
T ss_pred ------HHHHHHhcCCCEEEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEeCCCceECCCCCCCC
Confidence 567777777 999999998865433 3358999999999999999994 89999998876544322 25
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPL 293 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~ 293 (762)
++|+. .|..|. +.|+.||+.+|+++..+... |++++++||+.|||+...+.
T Consensus 129 ~~E~~--~~~~p~--------------------------~~Yg~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~ 180 (314)
T COG0451 129 IDEDL--GPPRPL--------------------------NPYGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKPD 180 (314)
T ss_pred ccccc--CCCCCC--------------------------CHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCC
Confidence 66653 222221 46999999999999999875 89999999999999976542
Q ss_pred CCCCCCCCCchHHHHHHhcCCe-EEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCC-cccHHHH
Q psy7542 294 PGWTDNINGPTGLLIGAGKGII-RTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDF-QITWYDI 371 (762)
Q Consensus 294 pGWidn~~gp~~li~~~~~G~l-~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~-piT~~el 371 (762)
+ ++ .....++.....+.. ..+.+++...++++++||+|.+++.++.+... . +||++++ . +.+..|+
T Consensus 181 --~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~-----~-~~ni~~~--~~~~~~~e~ 248 (314)
T COG0451 181 --L-SS-GVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPDG-----G-VFNIGSG--TAEITVREL 248 (314)
T ss_pred --C-Cc-CcHHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHHHhCCCC-----c-EEEeCCC--CCcEEHHHH
Confidence 1 00 112234444566664 66777888889999999999999999998765 3 9999998 5 8999999
Q ss_pred HHHHHHhhccCCC
Q psy7542 372 IENGKDIARNKVP 384 (762)
Q Consensus 372 ~~~i~~~~G~~~P 384 (762)
++.+.+..|...+
T Consensus 249 ~~~~~~~~~~~~~ 261 (314)
T COG0451 249 AEAVAEAVGSKAP 261 (314)
T ss_pred HHHHHHHhCCCCc
Confidence 9999999976655
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=257.08 Aligned_cols=280 Identities=16% Similarity=0.188 Sum_probs=186.0
Q ss_pred EEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCCC
Q psy7542 64 IFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDL 143 (762)
Q Consensus 64 VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~L 143 (762)
|||||||||||++|+++|++. +.+++++.|...... .... .+.+|+.|..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~--g~~~v~~~~~~~~~~---~~~~------------------------~~~~~~~d~~- 51 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDK--GITDILVVDNLKDGT---KFVN------------------------LVDLDIADYM- 51 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhC--CCceEEEecCCCcch---HHHh------------------------hhhhhhhhhh-
Confidence 899999999999999999998 565566666543211 0000 1123443321
Q ss_pred CCCHHH-HHhhc-----CCccEEEEcccccCcc-ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--cc
Q psy7542 144 GISAED-RQMLS-----ETIHIVYHIAATVRFD-DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--KV 214 (762)
Q Consensus 144 GLs~~~-l~~l~-----~~vDiViH~AA~v~f~-~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~~ 214 (762)
+.++ +..++ .++|+|||+||..... ......++.|+.||.+++++|++. ++ +|||+||++++++. .+
T Consensus 52 --~~~~~~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~-~~-~~i~~SS~~vyg~~~~~~ 127 (308)
T PRK11150 52 --DKEDFLAQIMAGDDFGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSAATYGGRTDDF 127 (308)
T ss_pred --hHHHHHHHHhcccccCCccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEcchHHhCcCCCCC
Confidence 1112 23333 2689999999864322 233457899999999999999997 55 69999999665543 24
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPL 293 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~ 293 (762)
++|+.+..|. +.|+.||..+|+++++++.. +++++++||+.|||+...+.
T Consensus 128 ~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~ 178 (308)
T PRK11150 128 IEEREYEKPL-----------------------------NVYGYSKFLFDEYVRQILPEANSQICGFRYFNVYGPREGHK 178 (308)
T ss_pred CccCCCCCCC-----------------------------CHHHHHHHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCC
Confidence 5554333332 68999999999999998765 99999999999999875431
Q ss_pred CCCCCCCCCc-hHHHHHHhcCCeEEE-eeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHH
Q psy7542 294 PGWTDNINGP-TGLLIGAGKGIIRTM-YCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDI 371 (762)
Q Consensus 294 pGWidn~~gp-~~li~~~~~G~l~~i-~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el 371 (762)
+ ..... ..+...+..|....+ .++++..+|++||||+|++++.++.... +++||++++ .++|+.|+
T Consensus 179 -~---~~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a~~~~~~~~~------~~~yni~~~--~~~s~~el 246 (308)
T PRK11150 179 -G---SMASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVGDVAAVNLWFWENGV------SGIFNCGTG--RAESFQAV 246 (308)
T ss_pred -C---ccchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHHHHHHHHHHHHhcCC------CCeEEcCCC--CceeHHHH
Confidence 1 11111 123345566654433 4667788999999999999998887532 369999998 88999999
Q ss_pred HHHHHHhhccC-C---CCccccc-------cCCcc-ccccCCCchhhHHHHHHhhhhhh
Q psy7542 372 IENGKDIARNK-V---PLNNVLW-------YPGGA-MTNRGYEPVLKRVHNRIKKGFDI 418 (762)
Q Consensus 372 ~~~i~~~~G~~-~---P~~~~~w-------~p~~~-~~~lG~kP~l~~l~~ki~~~~~~ 418 (762)
++.+.+..|.. . |.+.... ..+.. ...+||+|....+.+.+.+.+++
T Consensus 247 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~g~~p~~~~~~~gl~~~~~~ 305 (308)
T PRK11150 247 ADAVLAYHKKGEIEYIPFPDKLKGRYQAFTQADLTKLRAAGYDKPFKTVAEGVAEYMAW 305 (308)
T ss_pred HHHHHHHhCCCcceeccCccccccccceecccCHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 99999988632 1 1111000 00000 01178887755677777665544
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=258.95 Aligned_cols=294 Identities=16% Similarity=0.108 Sum_probs=204.9
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+|||||||||||++|+++|++. +.+|+++.|...... .++++.+... . .....++.++.+|++
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~--G~~V~~~~r~~~~~~-~~~~~~~~~~---------~--~~~~~~~~~~~~Dl~ 70 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSK--GYEVHGIIRRSSNFN-TQRLDHIYID---------P--HPNKARMKLHYGDLS 70 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHC--CCEEEEEeccccccc-ccchhhhccc---------c--ccccCceEEEEecCC
Confidence 6789999999999999999999998 778899988653211 1122221100 0 111246889999999
Q ss_pred CCCCCCCHHHHHhhcCC--ccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCcc-----EEEEEeCCccc
Q psy7542 140 VPDLGISAEDRQMLSET--IHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQ-----LFVYVSTAYCH 209 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~--vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk-----~fV~vSSay~~ 209 (762)
+.. ++..++++ +|+|||+||..... ......+++|+.||.+++++|++. +++ +||++||..++
T Consensus 71 d~~------~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~-~~~~~~~~~~v~~Ss~~vy 143 (340)
T PLN02653 71 DAS------SLRRWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLH-GQETGRQIKYYQAGSSEMY 143 (340)
T ss_pred CHH------HHHHHHHHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHh-ccccccceeEEEeccHHHh
Confidence 865 56666664 69999999976432 334556789999999999999987 443 89999998554
Q ss_pred CCCc-ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeecc
Q psy7542 210 PKEK-VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIP 287 (762)
Q Consensus 210 ~~~~-~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G 287 (762)
+... +++|+....|. +.|+.||+.+|.+++.++.. +++++..|+..+||
T Consensus 144 g~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~g 194 (340)
T PLN02653 144 GSTPPPQSETTPFHPR-----------------------------SPYAVAKVAAHWYTVNYREAYGLFACNGILFNHES 194 (340)
T ss_pred CCCCCCCCCCCCCCCC-----------------------------ChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccC
Confidence 4322 45565433332 68999999999999998876 88889999998888
Q ss_pred CCCCCCCCCCCCCCC--chHHHHHHhcCCe-EEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCC
Q psy7542 288 IWKDPLPGWTDNING--PTGLLIGAGKGII-RTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDF 364 (762)
Q Consensus 288 ~~~eP~pGWidn~~g--p~~li~~~~~G~l-~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~ 364 (762)
+...+ ++.. ...++..+..|.. ..+.+++++.+||++|+|+|++++.++.... +++||++++ +
T Consensus 195 p~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~a~a~~~~~~~~~------~~~yni~~g--~ 260 (340)
T PLN02653 195 PRRGE------NFVTRKITRAVGRIKVGLQKKLFLGNLDASRDWGFAGDYVEAMWLMLQQEK------PDDYVVATE--E 260 (340)
T ss_pred CCCCc------ccchhHHHHHHHHHHcCCCCceEeCCCcceecceeHHHHHHHHHHHHhcCC------CCcEEecCC--C
Confidence 75321 1111 0112233445543 3455889999999999999999999987532 368999999 8
Q ss_pred cccHHHHHHHHHHhhccCC--C--CccccccCCc------ccc----ccCCCchhhHHHHHHhhhhhh
Q psy7542 365 QITWYDIIENGKDIARNKV--P--LNNVLWYPGG------AMT----NRGYEPVLKRVHNRIKKGFDI 418 (762)
Q Consensus 365 piT~~el~~~i~~~~G~~~--P--~~~~~w~p~~------~~~----~lG~kP~l~~l~~ki~~~~~~ 418 (762)
++|+.|+++.+.+..|... + +......+.. ... .+||+|+. .+.+.+.+..+.
T Consensus 261 ~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~~-~l~~gi~~~~~~ 327 (340)
T PLN02653 261 SHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLKGDASKAREVLGWKPKV-GFEQLVKMMVDE 327 (340)
T ss_pred ceeHHHHHHHHHHHcCCCCCcceeeCcccCCccccccccCCHHHHHHHhCCCCCC-CHHHHHHHHHHH
Confidence 9999999999999986431 1 1110001110 000 17999988 788888775554
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-27 Score=251.92 Aligned_cols=225 Identities=20% Similarity=0.151 Sum_probs=170.7
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++.+ +|++++|... .+.||++++
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~----------------------------------~~~~Dl~d~ 43 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST----------------------------------DYCGDFSNP 43 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc----------------------------------cccCCCCCH
Confidence 579999999999999999999884 5788877421 236899876
Q ss_pred CCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--cc
Q psy7542 142 DLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--KV 214 (762)
Q Consensus 142 ~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~~ 214 (762)
+ .+.++++ ++|+||||||....+ .....++.+|+.||.+++++|++. +. +|||+||.++++.. .+
T Consensus 44 ~------~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~-g~-~~v~~Ss~~Vy~~~~~~p 115 (299)
T PRK09987 44 E------GVAETVRKIRPDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEV-GA-WVVHYSTDYVFPGTGDIP 115 (299)
T ss_pred H------HHHHHHHhcCCCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEccceEECCCCCCC
Confidence 5 6777766 589999999987643 234567889999999999999997 54 79999998776543 35
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLP 294 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~p 294 (762)
++|+..+.|. +.|+.||..+|+++..+. .+.+|+||++|||+...
T Consensus 116 ~~E~~~~~P~-----------------------------~~Yg~sK~~~E~~~~~~~---~~~~ilR~~~vyGp~~~--- 160 (299)
T PRK09987 116 WQETDATAPL-----------------------------NVYGETKLAGEKALQEHC---AKHLIFRTSWVYAGKGN--- 160 (299)
T ss_pred cCCCCCCCCC-----------------------------CHHHHHHHHHHHHHHHhC---CCEEEEecceecCCCCC---
Confidence 6776544444 789999999999998873 47899999999998532
Q ss_pred CCCCCCCCchHHHHHHhcCCeEEEeeC--CCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHH
Q psy7542 295 GWTDNINGPTGLLIGAGKGIIRTMYCD--YSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDII 372 (762)
Q Consensus 295 GWidn~~gp~~li~~~~~G~l~~i~gd--~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~ 372 (762)
+ ....++..+..|....+.++ +....+...+||++.++..++..... .++||++++ +++||.|++
T Consensus 161 ----~--~~~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~~~~~~~~~-----~giyni~~~--~~~s~~e~~ 227 (299)
T PRK09987 161 ----N--FAKTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAIRVALNKPEV-----AGLYHLVAS--GTTTWHDYA 227 (299)
T ss_pred ----C--HHHHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHHHhhccCCC-----CCeEEeeCC--CCccHHHHH
Confidence 1 12344555556666666666 55555666678888888877654322 369999998 889999999
Q ss_pred HHHHHhh
Q psy7542 373 ENGKDIA 379 (762)
Q Consensus 373 ~~i~~~~ 379 (762)
+.+.+..
T Consensus 228 ~~i~~~~ 234 (299)
T PRK09987 228 ALVFEEA 234 (299)
T ss_pred HHHHHHH
Confidence 9997754
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=249.20 Aligned_cols=298 Identities=16% Similarity=0.160 Sum_probs=200.5
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++. +.+|+++.|..... ..++..+. .....++.++.+|++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~~~~~~~--~~~~~~~~--------------~~~~~~~~~~~~Dl~d~ 62 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQN--GHDVVILDNLCNSK--RSVLPVIE--------------RLGGKHPTFVEGDIRNE 62 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHC--CCeEEEEecCCCch--HhHHHHHH--------------HhcCCCceEEEccCCCH
Confidence 57999999999999999999998 66778777653321 11121110 00123577889999986
Q ss_pred CCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--cc
Q psy7542 142 DLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--KV 214 (762)
Q Consensus 142 ~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~~ 214 (762)
+ .+..+++ ++|+|||+|+..... ......+++|+.|+.+++++|++. ++++||++||+.+++.. .+
T Consensus 63 ~------~~~~~~~~~~~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~~yg~~~~~~ 135 (338)
T PRK10675 63 A------LLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNLIFSSSATVYGDQPKIP 135 (338)
T ss_pred H------HHHHHHhcCCCCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccHHhhCCCCCCc
Confidence 5 5666655 589999999976532 234568899999999999999987 78899999998655432 24
Q ss_pred cccccCC-CCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--CCCEEEEeeeeeccCCCC
Q psy7542 215 LEEKTYP-PPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--GMPCMILRPSIIIPIWKD 291 (762)
Q Consensus 215 i~E~~~~-~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--glpv~IvRPs~V~G~~~e 291 (762)
++|+... .| .+.|+.+|..+|+++..+++. +++++++|++.|||+...
T Consensus 136 ~~E~~~~~~p-----------------------------~~~Y~~sK~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~ 186 (338)
T PRK10675 136 YVESFPTGTP-----------------------------QSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPS 186 (338)
T ss_pred cccccCCCCC-----------------------------CChhHHHHHHHHHHHHHHHHhcCCCcEEEEEeeeecCCCcc
Confidence 5555322 12 268999999999999998753 799999999999997532
Q ss_pred CCCCCCCCC--CCchHHHHHHhcCCe--EEEee------CCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 292 PLPGWTDNI--NGPTGLLIGAGKGII--RTMYC------DYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 292 P~pGWidn~--~gp~~li~~~~~G~l--~~i~g------d~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
..-|--+.. ......+..+..+.. ..+.+ ++.+.+++|+|+|+|++++.++...... ..+++||++++
T Consensus 187 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v~D~a~~~~~~~~~~~~~--~~~~~~ni~~~ 264 (338)
T PRK10675 187 GDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVAAMEKLANK--PGVHIYNLGAG 264 (338)
T ss_pred cccccCCCCChhHHHHHHHHHHhcCCCceEEeCCcCCCCCCcEEEeeEEHHHHHHHHHHHHHhhhcc--CCCceEEecCC
Confidence 111100000 001122333443322 22333 5678899999999999999988752110 13579999998
Q ss_pred CCCcccHHHHHHHHHHhhccCCCCccccccCC---------cccc-ccCCCchhhHHHHHHhhhhhh
Q psy7542 362 KDFQITWYDIIENGKDIARNKVPLNNVLWYPG---------GAMT-NRGYEPVLKRVHNRIKKGFDI 418 (762)
Q Consensus 362 ~~~piT~~el~~~i~~~~G~~~P~~~~~w~p~---------~~~~-~lG~kP~l~~l~~ki~~~~~~ 418 (762)
+++|+.|+++.+.+..|.+.++......+. .... .+||+|.. .+.+.+.+..++
T Consensus 265 --~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~k~~~~lg~~p~~-~~~~~~~~~~~~ 328 (338)
T PRK10675 265 --VGSSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTR-TLDEMAQDTWHW 328 (338)
T ss_pred --CceeHHHHHHHHHHHhCCCCCeeeCCCCCCchhhhhcCHHHHHHHhCCCCcC-cHHHHHHHHHHH
Confidence 899999999999999976544322111110 0011 17888876 677777665444
|
|
| >KOG1429|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=242.09 Aligned_cols=284 Identities=22% Similarity=0.257 Sum_probs=215.0
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+++|+||||.||||+||+++|+.. +..|++++--..+. .+-+... ......+.+.-|+.
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~e--gh~VIa~Dn~ftg~--k~n~~~~----------------~~~~~fel~~hdv~ 85 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTE--GHEVIALDNYFTGR--KENLEHW----------------IGHPNFELIRHDVV 85 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhc--CCeEEEEecccccc--hhhcchh----------------ccCcceeEEEeech
Confidence 5689999999999999999999999 56778887654431 1111111 12356677777776
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccC---ccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc--c
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVR---FDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK--V 214 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~---f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~--~ 214 (762)
.+ ++.+||.|+|+||..+ +..+.-..+.+|+.||.+++.+|++. + ++|++.||+-++++.. +
T Consensus 86 ~p-----------l~~evD~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv-~-aR~l~aSTseVYgdp~~hp 152 (350)
T KOG1429|consen 86 EP-----------LLKEVDQIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRV-G-ARFLLASTSEVYGDPLVHP 152 (350)
T ss_pred hH-----------HHHHhhhhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHh-C-ceEEEeecccccCCcccCC
Confidence 54 5678999999999764 45555567889999999999999997 3 8999999996666532 3
Q ss_pred cccccC--CCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCC
Q psy7542 215 LEEKTY--PPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKD 291 (762)
Q Consensus 215 i~E~~~--~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~e 291 (762)
..|... ..|.+|+ ..|...|.++|.++..|.+. |+.+.|.|+.+.|||.-.
T Consensus 153 q~e~ywg~vnpigpr--------------------------~cydegKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~ 206 (350)
T KOG1429|consen 153 QVETYWGNVNPIGPR--------------------------SCYDEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMH 206 (350)
T ss_pred CccccccccCcCCch--------------------------hhhhHHHHHHHHHHHHhhcccCcEEEEEeeecccCCccc
Confidence 344322 2244443 68999999999999999987 999999999999998643
Q ss_pred CCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHH
Q psy7542 292 PLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDI 371 (762)
Q Consensus 292 P~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el 371 (762)
|.|+ .....++.++.++....++|+|.+.++|++|+|++++++.++..... .-+|++++ +.+|+.|+
T Consensus 207 ----~~dg-rvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegll~Lm~s~~~------~pvNiGnp--~e~Tm~el 273 (350)
T KOG1429|consen 207 ----MDDG-RVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGLLRLMESDYR------GPVNIGNP--GEFTMLEL 273 (350)
T ss_pred ----cCCC-hhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHHHHHhcCCCc------CCcccCCc--cceeHHHH
Confidence 5442 22345777888999999999999999999999999999999998765 34999999 88999999
Q ss_pred HHHHHHhhccCCCCcc--------ccccCCccccc--cCCCchhhHHHHHHhhhh
Q psy7542 372 IENGKDIARNKVPLNN--------VLWYPGGAMTN--RGYEPVLKRVHNRIKKGF 416 (762)
Q Consensus 372 ~~~i~~~~G~~~P~~~--------~~w~p~~~~~~--lG~kP~l~~l~~ki~~~~ 416 (762)
++++.+..|...-... .-..|+..... +||.|++ ++.+++....
T Consensus 274 Aemv~~~~~~~s~i~~~~~~~Ddp~kR~pDit~ake~LgW~Pkv-~L~egL~~t~ 327 (350)
T KOG1429|consen 274 AEMVKELIGPVSEIEFVENGPDDPRKRKPDITKAKEQLGWEPKV-SLREGLPLTV 327 (350)
T ss_pred HHHHHHHcCCCcceeecCCCCCCccccCccHHHHHHHhCCCCCC-cHHHhhHHHH
Confidence 9999999853322111 11233333333 9999998 7888876633
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=252.34 Aligned_cols=300 Identities=13% Similarity=0.166 Sum_probs=194.8
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+|||||||||||++|+++|++. +.+|++++|.... .+++...+ . ...+++++.+|++
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~--G~~V~~~~r~~~~---~~~~~~~~--------------~-~~~~~~~~~~Dl~ 68 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQR--GYTVHATLRDPAK---SLHLLSKW--------------K-EGDRLRLFRADLQ 68 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCChHH---HHHHHHhh--------------c-cCCeEEEEECCCC
Confidence 6789999999999999999999998 6788888886421 11111110 1 1246889999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCcc-----ccHHH-----HHHHhHHHHHHHHHHHHHcCCccEEEEEeCCccc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFD-----DYMQT-----YVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCH 209 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~-----~~l~~-----~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~ 209 (762)
+++ ++.++++++|+|||+||..... .+... .++.|+.|+.+++++|++..++++||++||..++
T Consensus 69 ~~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vy 142 (353)
T PLN02896 69 EEG------SFDEAVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTL 142 (353)
T ss_pred CHH------HHHHHHcCCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhc
Confidence 865 6888888999999999986432 12332 4455679999999999887557899999998555
Q ss_pred CCC-------cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEe
Q psy7542 210 PKE-------KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILR 281 (762)
Q Consensus 210 ~~~-------~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvR 281 (762)
+.. .+++|+ .+.|.+. ..+ .....+.|+.||.++|+++..+++. +++++++|
T Consensus 143 g~~~~~~~~~~~~~E~-~~~p~~~-----------------~~~--~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR 202 (353)
T PLN02896 143 TAKDSNGRWRAVVDET-CQTPIDH-----------------VWN--TKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVI 202 (353)
T ss_pred cccccCCCCCCccCcc-cCCcHHH-----------------hhc--cCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEc
Confidence 421 234443 1111110 000 0011247999999999999999876 99999999
Q ss_pred eeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEE--Eee---CCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 282 PSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRT--MYC---DYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 282 Ps~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~--i~g---d~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
|+.|||+...+. .......+.....|.... ..+ .....+|||+|+|+|++++.++..... ..+|
T Consensus 203 ~~~vyGp~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~dfi~v~Dva~a~~~~l~~~~~-----~~~~ 271 (353)
T PLN02896 203 TTTVAGPFLTPS------VPSSIQVLLSPITGDSKLFSILSAVNSRMGSIALVHIEDICDAHIFLMEQTKA-----EGRY 271 (353)
T ss_pred CCcccCCCcCCC------CCchHHHHHHHhcCCccccccccccccccCceeEEeHHHHHHHHHHHHhCCCc-----CccE
Confidence 999999975431 111111111122333211 111 111246999999999999999876433 3468
Q ss_pred EecCCCCCcccHHHHHHHHHHhhccC-CCCcccccc----CC-ccc---cccCCCchhhHHHHHHhhhhhhhc
Q psy7542 357 NLTANKDFQITWYDIIENGKDIARNK-VPLNNVLWY----PG-GAM---TNRGYEPVLKRVHNRIKKGFDIFE 420 (762)
Q Consensus 357 Ni~s~~~~piT~~el~~~i~~~~G~~-~P~~~~~w~----p~-~~~---~~lG~kP~l~~l~~ki~~~~~~l~ 420 (762)
++ ++ .++++.|+++.+.+..+.. .++...... +. ... ..+||+|.. .+.+.+.+.++++.
T Consensus 272 ~~-~~--~~~s~~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGw~p~~-~l~~~i~~~~~~~~ 340 (353)
T PLN02896 272 IC-CV--DSYDMSELINHLSKEYPCSNIQVRLDEEKRGSIPSEISSKKLRDLGFEYKY-GIEEIIDQTIDCCV 340 (353)
T ss_pred Ee-cC--CCCCHHHHHHHHHHhCCCCCccccccccccCccccccCHHHHHHcCCCccC-CHHHHHHHHHHHHH
Confidence 65 45 6799999999999988422 111111000 11 010 118999987 67777777555443
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=246.04 Aligned_cols=236 Identities=17% Similarity=0.218 Sum_probs=170.9
Q ss_pred EEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCCCC
Q psy7542 65 FITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLG 144 (762)
Q Consensus 65 LVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~LG 144 (762)
||||||||||++|++.|++. +..|+++.+. ..+|+++..
T Consensus 1 lItGa~GfiG~~l~~~L~~~--g~~v~~~~~~-------------------------------------~~~Dl~~~~-- 39 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEAL--GFTNLVLRTH-------------------------------------KELDLTRQA-- 39 (306)
T ss_pred CcccCCCcccHHHHHHHHhC--CCcEEEeecc-------------------------------------ccCCCCCHH--
Confidence 69999999999999999998 4444444321 147887754
Q ss_pred CCHHHHHhhcC--CccEEEEcccccCc----cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--cccc
Q psy7542 145 ISAEDRQMLSE--TIHIVYHIAATVRF----DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--KVLE 216 (762)
Q Consensus 145 Ls~~~l~~l~~--~vDiViH~AA~v~f----~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~~i~ 216 (762)
++..+++ ++|+||||||.... .......++.|+.||.+++++|++. ++++||++||+++++.. .+++
T Consensus 40 ----~l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~i~~SS~~vyg~~~~~~~~ 114 (306)
T PLN02725 40 ----DVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRH-GVKKLLFLGSSCIYPKFAPQPIP 114 (306)
T ss_pred ----HHHHHHhccCCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHc-CCCeEEEeCceeecCCCCCCCCC
Confidence 6766655 57999999997542 1334568899999999999999997 78999999998766532 2455
Q ss_pred cccCCC-CCChhhHHHHHHhhhHHHHHHHHHhhhcCCCc-hhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCC
Q psy7542 217 EKTYPP-PVSPHNVIEKAELLSKNELELLKQELLQDFPN-GYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPL 293 (762)
Q Consensus 217 E~~~~~-p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn-~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~ 293 (762)
|+.... |.+| ++ .|+.||.++|++++.+.+. +++++++||+.|||+...-
T Consensus 115 E~~~~~~~~~p--------------------------~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~- 167 (306)
T PLN02725 115 ETALLTGPPEP--------------------------TNEWYAIAKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHDNF- 167 (306)
T ss_pred HHHhccCCCCC--------------------------CcchHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCC-
Confidence 542111 1111 13 4999999999999888765 9999999999999996421
Q ss_pred CCCCCCCCCchHHHH----HHhcCCeEEE-eeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccH
Q psy7542 294 PGWTDNINGPTGLLI----GAGKGIIRTM-YCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITW 368 (762)
Q Consensus 294 pGWidn~~gp~~li~----~~~~G~l~~i-~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~ 368 (762)
.+ ++......++. ....|....+ ++++++.+++|||+|+|++++.++..... .+.||++++ .++|+
T Consensus 168 ~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~~~~~~~~~~~~~-----~~~~ni~~~--~~~s~ 238 (306)
T PLN02725 168 HP--ENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAVVFLMRRYSG-----AEHVNVGSG--DEVTI 238 (306)
T ss_pred CC--CCCcccHHHHHHHHHHhhcCCCeEEEcCCCCeeeccccHHHHHHHHHHHHhcccc-----CcceEeCCC--CcccH
Confidence 10 00011112222 2234444333 67889999999999999999998876432 467899988 89999
Q ss_pred HHHHHHHHHhhccC
Q psy7542 369 YDIIENGKDIARNK 382 (762)
Q Consensus 369 ~el~~~i~~~~G~~ 382 (762)
.|+++.+.+.+|.+
T Consensus 239 ~e~~~~i~~~~~~~ 252 (306)
T PLN02725 239 KELAELVKEVVGFE 252 (306)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999998643
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=294.43 Aligned_cols=293 Identities=21% Similarity=0.286 Sum_probs=207.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcC--CCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTC--ENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~g--p~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
..++|||||||||+|++|+++|++.+ ..++|+|++|........+|+.+.+..... .. .....+++++.||
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~-----~~--~~~~~~i~~~~gD 1042 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGI-----WD--EEWASRIEVVLGD 1042 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCC-----Cc--hhhhcceEEEecc
Confidence 45899999999999999999999984 235999999987666666676554321110 00 2223589999999
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCccc--
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVL-- 215 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i-- 215 (762)
++++.+||+.+.+..+..++|+|||+||.+++..++......|+.||.+++++|++. ++++|+|+||..+++.....
T Consensus 1043 l~~~~lgl~~~~~~~l~~~~d~iiH~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~v~vSS~~v~~~~~~~~~ 1121 (1389)
T TIGR03443 1043 LSKEKFGLSDEKWSDLTNEVDVIIHNGALVHWVYPYSKLRDANVIGTINVLNLCAEG-KAKQFSFVSSTSALDTEYYVNL 1121 (1389)
T ss_pred CCCccCCcCHHHHHHHHhcCCEEEECCcEecCccCHHHHHHhHHHHHHHHHHHHHhC-CCceEEEEeCeeecCcccccch
Confidence 999999999999999999999999999999998888888889999999999999987 78899999998665421100
Q ss_pred ccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCC
Q psy7542 216 EEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPG 295 (762)
Q Consensus 216 ~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pG 295 (762)
.+........ .+.++. .. .......+++|+.||+++|+++..+.+.|++++|+|||.|+|+...+.
T Consensus 1122 ~~~~~~~~~~---------~~~e~~--~~-~~~~~~~~~~Y~~sK~~aE~l~~~~~~~g~~~~i~Rpg~v~G~~~~g~-- 1187 (1389)
T TIGR03443 1122 SDELVQAGGA---------GIPESD--DL-MGSSKGLGTGYGQSKWVAEYIIREAGKRGLRGCIVRPGYVTGDSKTGA-- 1187 (1389)
T ss_pred hhhhhhccCC---------CCCccc--cc-ccccccCCCChHHHHHHHHHHHHHHHhCCCCEEEECCCccccCCCcCC--
Confidence 0000000000 000000 00 000122347899999999999998876699999999999999865431
Q ss_pred CCCCCCCchHHHHHHhcCCeE-EEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHH
Q psy7542 296 WTDNINGPTGLLIGAGKGIIR-TMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIEN 374 (762)
Q Consensus 296 Widn~~gp~~li~~~~~G~l~-~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~ 374 (762)
| ....++..+..+... ...++....+|++||||+|++++.++...... ....+||++++ .+++|.++++.
T Consensus 1188 ~-----~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~Vddva~ai~~~~~~~~~~--~~~~i~~~~~~--~~~~~~~~~~~ 1258 (1389)
T TIGR03443 1188 T-----NTDDFLLRMLKGCIQLGLIPNINNTVNMVPVDHVARVVVAAALNPPKE--SELAVAHVTGH--PRIRFNDFLGT 1258 (1389)
T ss_pred C-----CchhHHHHHHHHHHHhCCcCCCCCccccccHHHHHHHHHHHHhCCccc--CCCCEEEeCCC--CCCcHHHHHHH
Confidence 2 122233333322111 12234556789999999999999998755321 13469999988 78999999999
Q ss_pred HHHhhccCCC
Q psy7542 375 GKDIARNKVP 384 (762)
Q Consensus 375 i~~~~G~~~P 384 (762)
+.+. |.+.+
T Consensus 1259 l~~~-g~~~~ 1267 (1389)
T TIGR03443 1259 LKTY-GYDVE 1267 (1389)
T ss_pred HHHh-CCCCC
Confidence 9875 34433
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-26 Score=235.32 Aligned_cols=227 Identities=25% Similarity=0.350 Sum_probs=180.7
Q ss_pred EEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCCC
Q psy7542 64 IFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDL 143 (762)
Q Consensus 64 VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~L 143 (762)
|||||||||||++|+++|+++ +..|+.+.|.+....... ...++.++.+|+.+.+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~--g~~v~~~~~~~~~~~~~~----------------------~~~~~~~~~~dl~~~~- 55 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKK--GHEVIVLSRSSNSESFEE----------------------KKLNVEFVIGDLTDKE- 55 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TTEEEEEESCSTGGHHHH----------------------HHTTEEEEESETTSHH-
T ss_pred EEEEccCCHHHHHHHHHHHHc--CCcccccccccccccccc----------------------ccceEEEEEeeccccc-
Confidence 799999999999999999999 667788898775432110 0127899999999765
Q ss_pred CCCHHHHHhhcCCc--cEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--cccc
Q psy7542 144 GISAEDRQMLSETI--HIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--KVLE 216 (762)
Q Consensus 144 GLs~~~l~~l~~~v--DiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~~i~ 216 (762)
.+.+++++. |+|||+||.... .......++.|+.++.+++++|++. ++++||++||+.+++.. .+++
T Consensus 56 -----~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~~~~i~~sS~~~y~~~~~~~~~ 129 (236)
T PF01370_consen 56 -----QLEKLLEKANIDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREA-GVKRFIFLSSASVYGDPDGEPID 129 (236)
T ss_dssp -----HHHHHHHHHTESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TTSEEEEEEEGGGGTSSSSSSBE
T ss_pred -----cccccccccCceEEEEeeccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc
Confidence 788887765 999999998641 1345678899999999999999998 66999999998555543 4566
Q ss_pred cccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCCCC
Q psy7542 217 EKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPG 295 (762)
Q Consensus 217 E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~pG 295 (762)
|+....|. +.|+.+|..+|+++..+.+. +++++++||+.|||+. .+..
T Consensus 130 e~~~~~~~-----------------------------~~Y~~~K~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~-~~~~- 178 (236)
T PF01370_consen 130 EDSPINPL-----------------------------SPYGASKRAAEELLRDYAKKYGLRVTILRPPNVYGPG-NPNN- 178 (236)
T ss_dssp TTSGCCHS-----------------------------SHHHHHHHHHHHHHHHHHHHHTSEEEEEEESEEESTT-SSSS-
T ss_pred cccccccc-----------------------------ccccccccccccccccccccccccccccccccccccc-cccc-
Confidence 66444333 67999999999999999876 9999999999999997 1111
Q ss_pred CCCCCCC-chHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 296 WTDNING-PTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 296 Widn~~g-p~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
+... ...++..+..|....+++++++.++++||+|+|++++.++.+... .+++||++
T Consensus 179 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~----~~~~yNig 236 (236)
T PF01370_consen 179 ---NSSSFLPSLIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALENPKA----AGGIYNIG 236 (236)
T ss_dssp ---STSSHHHHHHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHHSCT----TTEEEEES
T ss_pred ---ccccccchhhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHHHhCCCC----CCCEEEeC
Confidence 1122 235677777888788899999999999999999999999999884 47999985
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=240.97 Aligned_cols=245 Identities=17% Similarity=0.160 Sum_probs=175.5
Q ss_pred EEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCC
Q psy7542 64 IFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPD 142 (762)
Q Consensus 64 VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~ 142 (762)
|||||||||||++++++|++. +. .|+++.|..... ++.++ ....+.+|+.+++
T Consensus 1 ilItGatG~iG~~l~~~L~~~--g~~~v~~~~~~~~~~----~~~~~--------------------~~~~~~~d~~~~~ 54 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNER--GITDILVVDNLRDGH----KFLNL--------------------ADLVIADYIDKED 54 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHc--CCceEEEEecCCCch----hhhhh--------------------hheeeeccCcchh
Confidence 699999999999999999998 55 678877754321 11110 0124567777655
Q ss_pred CCCCHHHHHhhc----CCccEEEEcccccCcc-ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc-ccc
Q psy7542 143 LGISAEDRQMLS----ETIHIVYHIAATVRFD-DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK-VLE 216 (762)
Q Consensus 143 LGLs~~~l~~l~----~~vDiViH~AA~v~f~-~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~-~i~ 216 (762)
.++.+. .++|+|||+||..... .+....+++|+.|+.+++++|++. ++ +|||+||+++++... ++.
T Consensus 55 ------~~~~~~~~~~~~~D~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~-~~-~~v~~SS~~vy~~~~~~~~ 126 (314)
T TIGR02197 55 ------FLDRLEKGAFGKIEAIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEK-GI-PFIYASSAATYGDGEAGFR 126 (314)
T ss_pred ------HHHHHHhhccCCCCEEEECccccCccccchHHHHHHHHHHHHHHHHHHHHh-CC-cEEEEccHHhcCCCCCCcc
Confidence 345544 4799999999975432 345568899999999999999987 54 799999987665422 233
Q ss_pred cccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH--c-CCCEEEEeeeeeccCCCCCC
Q psy7542 217 EKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME--A-GMPCMILRPSIIIPIWKDPL 293 (762)
Q Consensus 217 E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~--~-glpv~IvRPs~V~G~~~eP~ 293 (762)
|+..+ .+ ..+.|+.||..+|.+++++.. . +++++++||+.|||+...+.
T Consensus 127 e~~~~--~~--------------------------p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~ 178 (314)
T TIGR02197 127 EGREL--ER--------------------------PLNVYGYSKFLFDQYVRRRVLPEALSAQVVGLRYFNVYGPREYHK 178 (314)
T ss_pred cccCc--CC--------------------------CCCHHHHHHHHHHHHHHHHhHhhccCCceEEEEEeeccCCCCCCC
Confidence 32211 01 126899999999999987532 2 67999999999999875421
Q ss_pred CCCCCCCCC-chHHHHHHhcCCeEEEe------eCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcc
Q psy7542 294 PGWTDNING-PTGLLIGAGKGIIRTMY------CDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQI 366 (762)
Q Consensus 294 pGWidn~~g-p~~li~~~~~G~l~~i~------gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~pi 366 (762)
. .... ...++..+..|....+. +++++.++++|+||+++++..++.. . .+++||++++ .++
T Consensus 179 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~i~~~~~~-~-----~~~~yni~~~--~~~ 246 (314)
T TIGR02197 179 G----KMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDVNLWLLEN-G-----VSGIFNLGTG--RAR 246 (314)
T ss_pred C----CcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHHHHHHHhc-c-----cCceEEcCCC--CCc
Confidence 1 1111 12334455555544443 4677889999999999999999887 2 2579999998 899
Q ss_pred cHHHHHHHHHHhhccC
Q psy7542 367 TWYDIIENGKDIARNK 382 (762)
Q Consensus 367 T~~el~~~i~~~~G~~ 382 (762)
|+.|+++.+.+.+|.+
T Consensus 247 s~~e~~~~i~~~~g~~ 262 (314)
T TIGR02197 247 SFNDLADAVFKALGKD 262 (314)
T ss_pred cHHHHHHHHHHHhCCC
Confidence 9999999999998744
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >KOG1430|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-26 Score=244.70 Aligned_cols=263 Identities=19% Similarity=0.246 Sum_probs=204.6
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++.+|+||||+||+|.||+++|++.++..+|++++.......-..... .....+++.+.+|+.
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~-----------------~~~~~~v~~~~~D~~ 65 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELT-----------------GFRSGRVTVILGDLL 65 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhh-----------------cccCCceeEEecchh
Confidence 567899999999999999999999955458998888654211111000 012468999999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccC--ccc-cHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCccc-
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVR--FDD-YMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVL- 215 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~--f~~-~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i- 215 (762)
+.. .+...+.++ .|+||||... +.. ..+.+.++||.||.+++++|++. +++++||+||+++..+..++
T Consensus 66 ~~~------~i~~a~~~~-~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~-~v~~lIYtSs~~Vvf~g~~~~ 137 (361)
T KOG1430|consen 66 DAN------SISNAFQGA-VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKEL-GVKRLIYTSSAYVVFGGEPII 137 (361)
T ss_pred hhh------hhhhhccCc-eEEEeccccCccccccchhhheeecchhHHHHHHHHHHh-CCCEEEEecCceEEeCCeecc
Confidence 877 688888999 8888888653 333 36778999999999999999998 99999999999886554432
Q ss_pred --ccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCC
Q psy7542 216 --EEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDP 292 (762)
Q Consensus 216 --~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP 292 (762)
+|+ .|.|. .+++.|+.||+.||+++.+++.. ++.++++||..|||+++.
T Consensus 138 n~~E~-~p~p~--------------------------~~~d~Y~~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~- 189 (361)
T KOG1430|consen 138 NGDES-LPYPL--------------------------KHIDPYGESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDK- 189 (361)
T ss_pred cCCCC-CCCcc--------------------------ccccccchHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCc-
Confidence 332 22222 34578999999999999999854 799999999999999754
Q ss_pred CCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc-CCCCCCceEEEecCCCCCcccHHHH
Q psy7542 293 LPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL-SNPGNTMRVINLTANKDFQITWYDI 371 (762)
Q Consensus 293 ~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~-~~~~~~~~iyNi~s~~~~piT~~el 371 (762)
.-...+...+..|......++++...|+++++.||.|.+.|...-. ......|++|+|+++ +|+...++
T Consensus 190 --------~~~~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA~~aL~~~~~~~~Gq~yfI~d~--~p~~~~~~ 259 (361)
T KOG1430|consen 190 --------RLLPKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILAARALLDKSPSVNGQFYFITDD--TPVRFFDF 259 (361)
T ss_pred --------cccHHHHHHHHccCceEEeeccccccceEEechhHHHHHHHHHHHHhcCCccCceEEEEeCC--CcchhhHH
Confidence 2233566777788888888999999999999999999998876543 222346899999999 88887777
Q ss_pred HHHHHHhhccCCCC
Q psy7542 372 IENGKDIARNKVPL 385 (762)
Q Consensus 372 ~~~i~~~~G~~~P~ 385 (762)
...+.+.+|...|.
T Consensus 260 ~~~l~~~lg~~~~~ 273 (361)
T KOG1430|consen 260 LSPLVKALGYCLPS 273 (361)
T ss_pred HHHHHHhcCCCCCc
Confidence 77888888777663
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=238.67 Aligned_cols=247 Identities=21% Similarity=0.276 Sum_probs=185.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|++.|++. +.+|+++.|...... .....+++++.+|+.++
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~-----------------------~~~~~~~~~~~~D~~~~ 55 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ--GEEVRVLVRPTSDRR-----------------------NLEGLDVEIVEGDLRDP 55 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC--CCEEEEEEecCcccc-----------------------ccccCCceEEEeeCCCH
Confidence 57999999999999999999998 678899999653210 00113688999999986
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC---Cccccc
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK---EKVLEE 217 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~---~~~i~E 217 (762)
+ ++.++++++|+|||+|+.... .......+++|+.|+.+++++|++. ++++||++||.++++. ..+++|
T Consensus 56 ~------~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~~~e 128 (328)
T TIGR03466 56 A------SLRKAVAGCRALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEA-GVERVVYTSSVATLGVRGDGTPADE 128 (328)
T ss_pred H------HHHHHHhCCCEEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEechhhcCcCCCCCCcCc
Confidence 5 788888999999999987542 3456678999999999999999986 7889999999866543 224555
Q ss_pred ccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCCCCC
Q psy7542 218 KTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPGW 296 (762)
Q Consensus 218 ~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~pGW 296 (762)
+....|.. ..+.|+.+|..+|+++.++... +++++++||+.+||+....
T Consensus 129 ~~~~~~~~--------------------------~~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~---- 178 (328)
T TIGR03466 129 TTPSSLDD--------------------------MIGHYKRSKFLAEQAALEMAAEKGLPVVIVNPSTPIGPRDIK---- 178 (328)
T ss_pred cCCCCccc--------------------------ccChHHHHHHHHHHHHHHHHHhcCCCEEEEeCCccCCCCCCC----
Confidence 43322221 1257999999999999998876 9999999999999986421
Q ss_pred CCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHH
Q psy7542 297 TDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGK 376 (762)
Q Consensus 297 idn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~ 376 (762)
......++.....+..+... +...++++++|+|++++.++.... .+..||++ + +++|+.|+++.+.
T Consensus 179 ---~~~~~~~~~~~~~~~~~~~~---~~~~~~i~v~D~a~a~~~~~~~~~-----~~~~~~~~-~--~~~s~~e~~~~i~ 244 (328)
T TIGR03466 179 ---PTPTGRIIVDFLNGKMPAYV---DTGLNLVHVDDVAEGHLLALERGR-----IGERYILG-G--ENLTLKQILDKLA 244 (328)
T ss_pred ---CCcHHHHHHHHHcCCCceee---CCCcceEEHHHHHHHHHHHHhCCC-----CCceEEec-C--CCcCHHHHHHHHH
Confidence 01112334444444433322 334689999999999999887643 25788885 4 6799999999999
Q ss_pred HhhccCCC
Q psy7542 377 DIARNKVP 384 (762)
Q Consensus 377 ~~~G~~~P 384 (762)
+.+|.+.+
T Consensus 245 ~~~g~~~~ 252 (328)
T TIGR03466 245 EITGRPAP 252 (328)
T ss_pred HHhCCCCC
Confidence 99976543
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-25 Score=236.46 Aligned_cols=292 Identities=21% Similarity=0.284 Sum_probs=197.8
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPD 142 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~ 142 (762)
+|||||||||||++|+++|++. +.+|+++.|..... .+++... . ...+++.+.+|+++++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~--g~~V~~~~~~~~~~--~~~~~~~---------------~-~~~~~~~~~~D~~~~~ 60 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLES--GHEVVVLDNLSNGS--PEALKRG---------------E-RITRVTFVEGDLRDRE 60 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhC--CCeEEEEeCCCccc--hhhhhhh---------------c-cccceEEEECCCCCHH
Confidence 5899999999999999999998 56677776543321 1111111 0 0126788899999876
Q ss_pred CCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--ccc
Q psy7542 143 LGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--KVL 215 (762)
Q Consensus 143 LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~~i 215 (762)
++..+++ ++|+|||+||..... ......++.|+.|+.+++++|.+. ++++||++||.++++.. .++
T Consensus 61 ------~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~ss~~~~g~~~~~~~ 133 (328)
T TIGR01179 61 ------LLDRLFEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQT-GVKKFIFSSSAAVYGEPSSIPI 133 (328)
T ss_pred ------HHHHHHHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhc-CCCEEEEecchhhcCCCCCCCc
Confidence 5666664 699999999976432 233467889999999999999987 67899999998554432 245
Q ss_pred ccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--CCCEEEEeeeeeccCCCCCC
Q psy7542 216 EEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--GMPCMILRPSIIIPIWKDPL 293 (762)
Q Consensus 216 ~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--glpv~IvRPs~V~G~~~eP~ 293 (762)
+|+....|. +.|+.+|+.+|.++..++.. +++++|+||+.|||+...+.
T Consensus 134 ~e~~~~~~~-----------------------------~~y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~ 184 (328)
T TIGR01179 134 SEDSPLGPI-----------------------------NPYGRSKLMSERILRDLSKADPGLSYVILRYFNVAGADPEGT 184 (328)
T ss_pred cccCCCCCC-----------------------------CchHHHHHHHHHHHHHHHHhccCCCEEEEecCcccCCCCCCc
Confidence 554322222 68999999999999987653 89999999999999976554
Q ss_pred CCCCCCCCCchHHH---HHHhcC--CeEEEe------eCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCC
Q psy7542 294 PGWTDNINGPTGLL---IGAGKG--IIRTMY------CDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANK 362 (762)
Q Consensus 294 pGWidn~~gp~~li---~~~~~G--~l~~i~------gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~ 362 (762)
.||.. .+...++ .....| ....+. ++++...++||++|+|+++..++...... ..+++||++++
T Consensus 185 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~a~~~~~~~~~~~~~--~~~~~~n~~~~- 259 (328)
T TIGR01179 185 IGEDP--PGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDLADAHLAALEYLLNG--GESHVYNLGYG- 259 (328)
T ss_pred cccCC--cccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHHHHHHHHHHhhhhcC--CCcceEEcCCC-
Confidence 44321 1112222 122221 111222 25567789999999999999988753211 13689999998
Q ss_pred CCcccHHHHHHHHHHhhccCCCCccccccCCc---------cccc-cCCCchhhHHHHHHhhhh
Q psy7542 363 DFQITWYDIIENGKDIARNKVPLNNVLWYPGG---------AMTN-RGYEPVLKRVHNRIKKGF 416 (762)
Q Consensus 363 ~~piT~~el~~~i~~~~G~~~P~~~~~w~p~~---------~~~~-lG~kP~l~~l~~ki~~~~ 416 (762)
.++|+.|+++.+.+.+|.+.++....+.+.. .... +||+|....+.+.+.+..
T Consensus 260 -~~~s~~ei~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~l~~~~~~~~ 322 (328)
T TIGR01179 260 -QGFSVLEVIEAFKKVSGVDFPVELAPRRPGDPASLVADASKIRRELGWQPKYTDLEIIIKTAW 322 (328)
T ss_pred -CcccHHHHHHHHHHHhCCCcceEeCCCCCccccchhcchHHHHHHhCCCCCcchHHHHHHHHH
Confidence 8899999999999999866544321111110 0000 678877644666665543
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=247.47 Aligned_cols=266 Identities=15% Similarity=0.185 Sum_probs=183.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.++|+|||||||||||++|+++|++. +++|++++|.... .+.+.++... . +. .....++.++.+|+
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~--G~~V~~~~r~~~~---~~~l~~l~~~------~-~~--~~~~~~~~~v~~Dl 116 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRH--GYSVRIAVDTQED---KEKLREMEMF------G-EM--GRSNDGIWTVMANL 116 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHC--CCEEEEEeCCHHH---HHHHHHHhhh------c-cc--cccCCceEEEEcCC
Confidence 47899999999999999999999998 6778888885321 1122211000 0 00 00113588999999
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCccc---cHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCc--ccCC--
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRFDD---YMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAY--CHPK-- 211 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~---~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay--~~~~-- 211 (762)
++++ ++.++++++|.|||+|+.+.... ......++|+.||.+++++|++..++++|||+||.. +++.
T Consensus 117 ~d~~------~l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~ 190 (367)
T PLN02686 117 TEPE------SLHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNY 190 (367)
T ss_pred CCHH------HHHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccC
Confidence 9876 68888889999999999764322 123567889999999999999865799999999963 2221
Q ss_pred --C--cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeec
Q psy7542 212 --E--KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIII 286 (762)
Q Consensus 212 --~--~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~ 286 (762)
. ..++|+..... . ......+.|+.||..+|+++..+++. |++++++||+.||
T Consensus 191 ~~~~~~~i~E~~~~~~---------------~--------~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vy 247 (367)
T PLN02686 191 PHDLPPVIDEESWSDE---------------S--------FCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVT 247 (367)
T ss_pred CCCCCcccCCCCCCCh---------------h--------hcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceE
Confidence 1 12344321100 0 00011257999999999999988765 9999999999999
Q ss_pred cCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcc
Q psy7542 287 PIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQI 366 (762)
Q Consensus 287 G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~pi 366 (762)
|+...+. .+..+ ..+..|.. .+.+++ ..++++|+|+|++++.++...... ..+++| ++++ .++
T Consensus 248 Gp~~~~~--------~~~~~-~~~~~g~~-~~~g~g--~~~~v~V~Dva~A~~~al~~~~~~--~~~~~y-i~~g--~~~ 310 (367)
T PLN02686 248 GPGFFRR--------NSTAT-IAYLKGAQ-EMLADG--LLATADVERLAEAHVCVYEAMGNK--TAFGRY-ICFD--HVV 310 (367)
T ss_pred CCCCCCC--------CChhH-HHHhcCCC-ccCCCC--CcCeEEHHHHHHHHHHHHhccCCC--CCCCcE-EEeC--CCc
Confidence 9964321 12222 23445543 344444 357999999999999998753110 135678 7777 789
Q ss_pred cHHHHHHHHHHhhccCCC
Q psy7542 367 TWYDIIENGKDIARNKVP 384 (762)
Q Consensus 367 T~~el~~~i~~~~G~~~P 384 (762)
++.|+++.+.+.+|.+.+
T Consensus 311 s~~e~~~~i~~~~g~~~~ 328 (367)
T PLN02686 311 SREDEAEELARQIGLPIN 328 (367)
T ss_pred cHHHHHHHHHHHcCCCCC
Confidence 999999999999975543
|
|
| >KOG1371|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=233.21 Aligned_cols=310 Identities=19% Similarity=0.236 Sum_probs=225.9
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
+++||||||+||||+|.+-+|++++.+| -|.-|.|.- ..+..|++++.. ...+|.++.+|++
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~--~~sl~r~~~l~~---------------~~~~v~f~~~Dl~ 64 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSY--LESLKRVRQLLG---------------EGKSVFFVEGDLN 64 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccc--hhHHHHHHHhcC---------------CCCceEEEEeccC
Confidence 5789999999999999999999996666 555555543 234456655532 1478999999999
Q ss_pred CCCCCCCHHHHHhhcCC--ccEEEEcccccCcccc---HHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC--C
Q psy7542 140 VPDLGISAEDRQMLSET--IHIVYHIAATVRFDDY---MQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK--E 212 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~--vDiViH~AA~v~f~~~---l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~--~ 212 (762)
|.. .++++++. .|.|+|.||.....++ .-.....|+.||.++|+.+++. +++.+|+.||+.+++. .
T Consensus 65 D~~------~L~kvF~~~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~-~~~~~V~sssatvYG~p~~ 137 (343)
T KOG1371|consen 65 DAE------ALEKLFSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAH-NVKALVFSSSATVYGLPTK 137 (343)
T ss_pred CHH------HHHHHHhhcCCceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHc-CCceEEEecceeeecCcce
Confidence 866 68888875 6999999998664433 2457889999999999999998 5999999999955554 4
Q ss_pred cccccccCCC-CCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCC
Q psy7542 213 KVLEEKTYPP-PVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWK 290 (762)
Q Consensus 213 ~~i~E~~~~~-p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~ 290 (762)
-++.|+.... |. |+|+.||...|.++...... ++.++++|.+.++|..-
T Consensus 138 ip~te~~~t~~p~-----------------------------~pyg~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p 188 (343)
T KOG1371|consen 138 VPITEEDPTDQPT-----------------------------NPYGKTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHP 188 (343)
T ss_pred eeccCcCCCCCCC-----------------------------CcchhhhHHHHHHHHhhhccccceEEEEEeccccCccc
Confidence 4777765444 33 78999999999999999887 89999999999999443
Q ss_pred CCCCCCCCCCCCchHH---HHHHhcCCeE--EE------eeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 291 DPLPGWTDNINGPTGL---LIGAGKGIIR--TM------YCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 291 eP~pGWidn~~gp~~l---i~~~~~G~l~--~i------~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
...+|-. -...+..+ +.....|..+ .+ ..|++.++|+++|-|.|...+.++.+.... ....+||++
T Consensus 189 ~Gr~ge~-p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t~dgt~vrdyi~v~Dla~~h~~al~k~~~~--~~~~i~Nlg 265 (343)
T KOG1371|consen 189 SGRIGEA-PLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTTIDGTIVRDYIHVLDLADGHVAALGKLRGA--AEFGVYNLG 265 (343)
T ss_pred cCccCCC-CccCcccccccccchhhcccccceeecCcccccCCCeeecceeeEehHHHHHHHhhccccc--hheeeEeec
Confidence 3222211 11112222 1222222222 11 236789999999999999999999876541 135699999
Q ss_pred CCCCCcccHHHHHHHHHHhhccCCCCccccccCCccccc----------cCCCchhhHHHHHHhhhhhhhcccccCceee
Q psy7542 360 ANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMTN----------RGYEPVLKRVHNRIKKGFDIFEYYTKNSWSF 429 (762)
Q Consensus 360 s~~~~piT~~el~~~i~~~~G~~~P~~~~~w~p~~~~~~----------lG~kP~l~~l~~ki~~~~~~l~~f~~~~w~F 429 (762)
++ .+.+..+++..+++..|.+.|.......+...... +||+|... +++.... .+.|..++.+.|
T Consensus 266 tg--~g~~V~~lv~a~~k~~g~~~k~~~v~~R~gdv~~~ya~~~~a~~elgwk~~~~-iee~c~d---lw~W~~~np~gy 339 (343)
T KOG1371|consen 266 TG--KGSSVLELVTAFEKALGVKIKKKVVPRRNGDVAFVYANPSKAQRELGWKAKYG-LQEMLKD---LWRWQKQNPSGY 339 (343)
T ss_pred CC--CCccHHHHHHHHHHHhcCCCCccccCCCCCCceeeeeChHHHHHHhCCccccC-HHHHHHH---HHHHHhcCCCcC
Confidence 99 89999999999999999888766544333322111 99999884 6666555 566667777766
Q ss_pred ecH
Q psy7542 430 KNE 432 (762)
Q Consensus 430 d~~ 432 (762)
+++
T Consensus 340 ~~~ 342 (343)
T KOG1371|consen 340 DTK 342 (343)
T ss_pred CCC
Confidence 643
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-25 Score=239.78 Aligned_cols=225 Identities=14% Similarity=0.125 Sum_probs=171.2
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||+|++|+++|++. +++|++++|..... ..+ ...+++++.||+.++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~--g~~V~~l~R~~~~~---~~l--------------------~~~~v~~v~~Dl~d~ 55 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE--GYQVRCLVRNLRKA---SFL--------------------KEWGAELVYGDLSLP 55 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCeEEEEEcChHHh---hhH--------------------hhcCCEEEECCCCCH
Confidence 58999999999999999999998 67899999974211 000 013688999999987
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccCC
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYP 221 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~~ 221 (762)
+ ++..+++++|+|||+++... .......++|+.|+.+++++|++. ++++|||+||..+... +
T Consensus 56 ~------~l~~al~g~d~Vi~~~~~~~--~~~~~~~~~~~~~~~~l~~aa~~~-gvkr~I~~Ss~~~~~~---------~ 117 (317)
T CHL00194 56 E------TLPPSFKGVTAIIDASTSRP--SDLYNAKQIDWDGKLALIEAAKAA-KIKRFIFFSILNAEQY---------P 117 (317)
T ss_pred H------HHHHHHCCCCEEEECCCCCC--CCccchhhhhHHHHHHHHHHHHHc-CCCEEEEecccccccc---------C
Confidence 6 78888999999999986432 223357788999999999999997 8999999999643110 0
Q ss_pred CCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCCC
Q psy7542 222 PPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNIN 301 (762)
Q Consensus 222 ~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~~ 301 (762)
++.|..+|..+|+++++. +++++|+||+.+++..-.
T Consensus 118 -------------------------------~~~~~~~K~~~e~~l~~~---~l~~tilRp~~~~~~~~~---------- 153 (317)
T CHL00194 118 -------------------------------YIPLMKLKSDIEQKLKKS---GIPYTIFRLAGFFQGLIS---------- 153 (317)
T ss_pred -------------------------------CChHHHHHHHHHHHHHHc---CCCeEEEeecHHhhhhhh----------
Confidence 145888999999998654 899999999977653110
Q ss_pred CchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHhhcc
Q psy7542 302 GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIARN 381 (762)
Q Consensus 302 gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~~G~ 381 (762)
.+......+.. ....+++..+++|+++|+|++++.++..+.. .+++||++++ +++|+.|+++.+.+..|.
T Consensus 154 ---~~~~~~~~~~~-~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~----~~~~~ni~g~--~~~s~~el~~~~~~~~g~ 223 (317)
T CHL00194 154 ---QYAIPILEKQP-IWITNESTPISYIDTQDAAKFCLKSLSLPET----KNKTFPLVGP--KSWNSSEIISLCEQLSGQ 223 (317)
T ss_pred ---hhhhhhccCCc-eEecCCCCccCccCHHHHHHHHHHHhcCccc----cCcEEEecCC--CccCHHHHHHHHHHHhCC
Confidence 01111222332 2334556778999999999999999876544 4789999998 899999999999999976
Q ss_pred CC
Q psy7542 382 KV 383 (762)
Q Consensus 382 ~~ 383 (762)
+.
T Consensus 224 ~~ 225 (317)
T CHL00194 224 KA 225 (317)
T ss_pred CC
Confidence 53
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=236.98 Aligned_cols=236 Identities=18% Similarity=0.165 Sum_probs=176.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+|||||||||||++|+++|++.+.+.+|+++.|.... ...+.+.+ ...++.++.+|+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~---~~~~~~~~----------------~~~~~~~v~~Dl 62 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELK---QWEMQQKF----------------PAPCLRFFIGDV 62 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhH---HHHHHHHh----------------CCCcEEEEEccC
Confidence 47899999999999999999999998533588988886421 11121110 114688999999
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCccc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVL 215 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i 215 (762)
++++ ++..+++++|+|||+||.... ..+....+++|+.|+.+++++|++. ++++||++||....
T Consensus 63 ~d~~------~l~~~~~~iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~-~~~~iV~~SS~~~~------ 129 (324)
T TIGR03589 63 RDKE------RLTRALRGVDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDN-GVKRVVALSTDKAA------ 129 (324)
T ss_pred CCHH------HHHHHHhcCCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCC------
Confidence 9865 788888899999999997542 2334578999999999999999986 77899999996321
Q ss_pred ccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH---c-CCCEEEEeeeeeccCCCC
Q psy7542 216 EEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME---A-GMPCMILRPSIIIPIWKD 291 (762)
Q Consensus 216 ~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~---~-glpv~IvRPs~V~G~~~e 291 (762)
.|. ++|+.||+.+|+++..++. . |++++++|||.|+|+...
T Consensus 130 ------~p~-----------------------------~~Y~~sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~~ 174 (324)
T TIGR03589 130 ------NPI-----------------------------NLYGATKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRGS 174 (324)
T ss_pred ------CCC-----------------------------CHHHHHHHHHHHHHHHHHhhccccCcEEEEEeecceeCCCCC
Confidence 111 6799999999999977542 2 899999999999997421
Q ss_pred CCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHH
Q psy7542 292 PLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDI 371 (762)
Q Consensus 292 P~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el 371 (762)
....+...+..|......++++..++|++|+|+|++++.++..... +++|+ +++ ..+++.|+
T Consensus 175 ----------~i~~~~~~~~~~~~~~~i~~~~~~r~~i~v~D~a~a~~~al~~~~~-----~~~~~-~~~--~~~sv~el 236 (324)
T TIGR03589 175 ----------VVPFFKSLKEEGVTELPITDPRMTRFWITLEQGVNFVLKSLERMLG-----GEIFV-PKI--PSMKITDL 236 (324)
T ss_pred ----------cHHHHHHHHHhCCCCeeeCCCCceEeeEEHHHHHHHHHHHHhhCCC-----CCEEc-cCC--CcEEHHHH
Confidence 1223333444454222234678889999999999999999876422 46884 555 56999999
Q ss_pred HHHHHHhh
Q psy7542 372 IENGKDIA 379 (762)
Q Consensus 372 ~~~i~~~~ 379 (762)
++.+.+..
T Consensus 237 ~~~i~~~~ 244 (324)
T TIGR03589 237 AEAMAPEC 244 (324)
T ss_pred HHHHHhhC
Confidence 99999865
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=233.08 Aligned_cols=255 Identities=15% Similarity=0.135 Sum_probs=178.6
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+++|||||||||||++++++|++. +++|++++|........+.+.++ .....+++++.+|++
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~--G~~V~~~~R~~~~~~~~~~~~~l---------------~~~~~~~~~~~~Dl~ 67 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSR--GYTVHAAVQKNGETEIEKEIRGL---------------SCEEERLKVFDVDPL 67 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEEcCchhhhHHHHHHhc---------------ccCCCceEEEEecCC
Confidence 4678999999999999999999998 67889999864322111111111 011246889999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCccc--C-C----
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCH--P-K---- 211 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~--~-~---- 211 (762)
+++ ++..++.++|.|+|+++.... ....+..+++|+.||.+++++|.+..++++||++||..+. . .
T Consensus 68 d~~------~~~~~l~~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~ 141 (297)
T PLN02583 68 DYH------SILDALKGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNIST 141 (297)
T ss_pred CHH------HHHHHHcCCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCC
Confidence 876 678888999999998865532 2335678999999999999999886467899999997432 2 1
Q ss_pred CcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCC
Q psy7542 212 EKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWK 290 (762)
Q Consensus 212 ~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~ 290 (762)
..+++|+.+..+ . ........|+.||.++|+++..+++. |++++++||+.|+|+..
T Consensus 142 ~~~~~E~~~~~~---~--------------------~~~~~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~ 198 (297)
T PLN02583 142 QKDVDERSWSDQ---N--------------------FCRKFKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSL 198 (297)
T ss_pred CCCCCcccCCCH---H--------------------HHhhcccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCC
Confidence 113344321110 0 00011136999999999999988765 99999999999999864
Q ss_pred CCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHH
Q psy7542 291 DPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYD 370 (762)
Q Consensus 291 eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~e 370 (762)
.+.. . ...+... ..+ ....++|+|+|+|++++.++..+.. .+.|+++++ +...+.+
T Consensus 199 ~~~~----------~----~~~~~~~-~~~--~~~~~~v~V~Dva~a~~~al~~~~~-----~~r~~~~~~--~~~~~~~ 254 (297)
T PLN02583 199 TQHN----------P----YLKGAAQ-MYE--NGVLVTVDVNFLVDAHIRAFEDVSS-----YGRYLCFNH--IVNTEED 254 (297)
T ss_pred CCch----------h----hhcCCcc-cCc--ccCcceEEHHHHHHHHHHHhcCccc-----CCcEEEecC--CCccHHH
Confidence 3210 0 1122211 111 2346799999999999999986654 347999887 5556789
Q ss_pred HHHHHHHhhccCCCC
Q psy7542 371 IIENGKDIARNKVPL 385 (762)
Q Consensus 371 l~~~i~~~~G~~~P~ 385 (762)
+.+++++.+ ...|.
T Consensus 255 ~~~~~~~~~-p~~~~ 268 (297)
T PLN02583 255 AVKLAQMLS-PLIPS 268 (297)
T ss_pred HHHHHHHhC-CCCCC
Confidence 999999988 44444
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=231.38 Aligned_cols=224 Identities=20% Similarity=0.201 Sum_probs=170.6
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPD 142 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~ 142 (762)
+|||||||||+|++|+++|++. +.+|+++.|. .+|+.+++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~--g~~v~~~~r~--------------------------------------~~d~~~~~ 40 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE--GRVVVALTSS--------------------------------------QLDLTDPE 40 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc--CCEEEEeCCc--------------------------------------ccCCCCHH
Confidence 4899999999999999999998 6678888773 24665543
Q ss_pred CCCCHHHHHhhcCCc--cEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--ccc
Q psy7542 143 LGISAEDRQMLSETI--HIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--KVL 215 (762)
Q Consensus 143 LGLs~~~l~~l~~~v--DiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~~i 215 (762)
++..+++++ |+|||+||..... ......+++|+.|+.+++++|++. + .+||++||.++++.. .++
T Consensus 41 ------~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~v~~Ss~~vy~~~~~~~~ 112 (287)
T TIGR01214 41 ------ALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARH-G-ARLVHISTDYVFDGEGKRPY 112 (287)
T ss_pred ------HHHHHHHhCCCCEEEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHc-C-CeEEEEeeeeeecCCCCCCC
Confidence 677766655 9999999976543 234567899999999999999987 4 389999998766542 345
Q ss_pred ccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCC
Q psy7542 216 EEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPG 295 (762)
Q Consensus 216 ~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pG 295 (762)
+|+..+.|. +.|+.+|..+|++++.+ +++++|+||++|||+...
T Consensus 113 ~E~~~~~~~-----------------------------~~Y~~~K~~~E~~~~~~---~~~~~ilR~~~v~G~~~~---- 156 (287)
T TIGR01214 113 REDDATNPL-----------------------------NVYGQSKLAGEQAIRAA---GPNALIVRTSWLYGGGGG---- 156 (287)
T ss_pred CCCCCCCCc-----------------------------chhhHHHHHHHHHHHHh---CCCeEEEEeeecccCCCC----
Confidence 665433222 68999999999999877 789999999999998631
Q ss_pred CCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHH
Q psy7542 296 WTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENG 375 (762)
Q Consensus 296 Widn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i 375 (762)
+ .....++..+..+....+.+ +...+++++||+|++++.++..... .+++||++++ +++|+.|+++.+
T Consensus 157 ~----~~~~~~~~~~~~~~~~~~~~--~~~~~~v~v~Dva~a~~~~~~~~~~----~~~~~ni~~~--~~~s~~e~~~~i 224 (287)
T TIGR01214 157 R----NFVRTMLRLAGRGEELRVVD--DQIGSPTYAKDLARVIAALLQRLAR----ARGVYHLANS--GQCSWYEFAQAI 224 (287)
T ss_pred C----CHHHHHHHHhhcCCCceEec--CCCcCCcCHHHHHHHHHHHHhhccC----CCCeEEEECC--CCcCHHHHHHHH
Confidence 0 11223444444444333333 4668999999999999999976533 3689999998 899999999999
Q ss_pred HHhhccC
Q psy7542 376 KDIARNK 382 (762)
Q Consensus 376 ~~~~G~~ 382 (762)
.+..|.+
T Consensus 225 ~~~~~~~ 231 (287)
T TIGR01214 225 FEEAGAD 231 (287)
T ss_pred HHHhCcc
Confidence 9999644
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-23 Score=221.97 Aligned_cols=238 Identities=17% Similarity=0.140 Sum_probs=162.1
Q ss_pred EEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCCC
Q psy7542 64 IFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDL 143 (762)
Q Consensus 64 VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~L 143 (762)
|||||||||||+++++.|++. +.+|++++|........ . ...+ .|+..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~----------------------~-~~~~----~~~~~--- 48 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKD--GHEVTILTRSPPAGANT----------------------K-WEGY----KPWAP--- 48 (292)
T ss_pred CEEEcccchhhHHHHHHHHHc--CCEEEEEeCCCCCCCcc----------------------c-ceee----ecccc---
Confidence 699999999999999999998 67899999976532100 0 0001 12111
Q ss_pred CCCHHHHHhhcCCccEEEEcccccCccc-----cHHHHHHHhHHHHHHHHHHHHHcCCc--cEEEEEeCCcccCC--Ccc
Q psy7542 144 GISAEDRQMLSETIHIVYHIAATVRFDD-----YMQTYVFLNTRGTRDMLNLSKQMIHL--QLFVYVSTAYCHPK--EKV 214 (762)
Q Consensus 144 GLs~~~l~~l~~~vDiViH~AA~v~f~~-----~l~~~~~~NV~GT~~LLelA~~~~~l--k~fV~vSSay~~~~--~~~ 214 (762)
......+.++|+|||+||...... .....+++|+.|+.+++++|++. ++ ..||+.||+++++. ..+
T Consensus 49 ----~~~~~~~~~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~~i~~S~~~~yg~~~~~~ 123 (292)
T TIGR01777 49 ----LAESEALEGADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAA-EQKPKVFISASAVGYYGTSEDRV 123 (292)
T ss_pred ----cchhhhcCCCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhc-CCCceEEEEeeeEEEeCCCCCCC
Confidence 123445678999999999765422 23457889999999999999987 44 46777777644442 234
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLP 294 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~p 294 (762)
++|+..+.+. +.|+..+...|+.+....+.+++++|+||+.|||+..
T Consensus 124 ~~E~~~~~~~-----------------------------~~~~~~~~~~e~~~~~~~~~~~~~~ilR~~~v~G~~~---- 170 (292)
T TIGR01777 124 FTEEDSPAGD-----------------------------DFLAELCRDWEEAAQAAEDLGTRVVLLRTGIVLGPKG---- 170 (292)
T ss_pred cCcccCCCCC-----------------------------ChHHHHHHHHHHHhhhchhcCCceEEEeeeeEECCCc----
Confidence 5565322221 2355556666777665443389999999999999842
Q ss_pred CCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHH
Q psy7542 295 GWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIEN 374 (762)
Q Consensus 295 GWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~ 374 (762)
++. ..++....... ....++++..+++|+++|+|+++..++.++.. .++||++++ .++|+.|+++.
T Consensus 171 ~~~------~~~~~~~~~~~-~~~~g~~~~~~~~i~v~Dva~~i~~~l~~~~~-----~g~~~~~~~--~~~s~~di~~~ 236 (292)
T TIGR01777 171 GAL------AKMLPPFRLGL-GGPLGSGRQWFSWIHIEDLVQLILFALENASI-----SGPVNATAP--EPVRNKEFAKA 236 (292)
T ss_pred chh------HHHHHHHhcCc-ccccCCCCcccccEeHHHHHHHHHHHhcCccc-----CCceEecCC--CccCHHHHHHH
Confidence 111 11111111111 11257788999999999999999999876433 468999998 89999999999
Q ss_pred HHHhhccCCCC
Q psy7542 375 GKDIARNKVPL 385 (762)
Q Consensus 375 i~~~~G~~~P~ 385 (762)
+.+..|.+.+.
T Consensus 237 i~~~~g~~~~~ 247 (292)
T TIGR01777 237 LARALHRPAFF 247 (292)
T ss_pred HHHHhCCCCcC
Confidence 99999755433
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-23 Score=229.78 Aligned_cols=246 Identities=21% Similarity=0.188 Sum_probs=201.7
Q ss_pred chhhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCC
Q psy7542 52 PDRISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEK 130 (762)
Q Consensus 52 ~~~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~k 130 (762)
.+.+..+++||+||||||||.+|+.|++++++. +. +|+++.|+..+. .-++.- ++... ...+
T Consensus 241 ~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~--~p~~i~l~~~~E~~~---~~i~~e--------l~~~~----~~~~ 303 (588)
T COG1086 241 TELIGAMLTGKTVLVTGGGGSIGSELCRQILKF--NPKEIILFSRDEYKL---YLIDME--------LREKF----PELK 303 (588)
T ss_pred HHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhc--CCCEEEEecCchHHH---HHHHHH--------HHhhC----CCcc
Confidence 356888999999999999999999999999999 55 899999976432 112211 11111 1478
Q ss_pred eEEEEeecCCCCCCCCHHHHHhhcCC--ccEEEEcccccC---ccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 131 VIPINGDVAVPDLGISAEDRQMLSET--IHIVYHIAATVR---FDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 131 V~~V~GDl~~~~LGLs~~~l~~l~~~--vDiViH~AA~v~---f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
+.++.||+.|.+ .+.+++++ +|+|||+||.-+ ...++.+++++||.||.|++++|.++ ++++||.+||
T Consensus 304 ~~~~igdVrD~~------~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~-~V~~~V~iST 376 (588)
T COG1086 304 LRFYIGDVRDRD------RVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKN-GVKKFVLIST 376 (588)
T ss_pred eEEEecccccHH------HHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHh-CCCEEEEEec
Confidence 999999999977 78899998 999999999755 35677899999999999999999998 9999999999
Q ss_pred CcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEEEe
Q psy7542 206 AYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMILR 281 (762)
Q Consensus 206 ay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~IvR 281 (762)
.-+.. | .|.||.||++||.++..++.+ +-.++++|
T Consensus 377 DKAV~------------P-----------------------------tNvmGaTKr~aE~~~~a~~~~~~~~~T~f~~VR 415 (588)
T COG1086 377 DKAVN------------P-----------------------------TNVMGATKRLAEKLFQAANRNVSGTGTRFCVVR 415 (588)
T ss_pred CcccC------------C-----------------------------chHhhHHHHHHHHHHHHHhhccCCCCcEEEEEE
Confidence 84321 1 189999999999999999774 37899999
Q ss_pred eeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 282 PSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 282 Ps~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
.|+|.|+...-+| -+...+..|... ...+++..+-|+.++++++.++.|+..... +++|-+..|
T Consensus 416 FGNVlGSrGSViP----------lFk~QI~~Ggpl-TvTdp~mtRyfMTI~EAv~LVlqA~a~~~g-----GeifvldMG 479 (588)
T COG1086 416 FGNVLGSRGSVIP----------LFKKQIAEGGPL-TVTDPDMTRFFMTIPEAVQLVLQAGAIAKG-----GEIFVLDMG 479 (588)
T ss_pred ecceecCCCCCHH----------HHHHHHHcCCCc-cccCCCceeEEEEHHHHHHHHHHHHhhcCC-----CcEEEEcCC
Confidence 9999999654332 355666777544 445899999999999999999999887554 899999998
Q ss_pred CCCcccHHHHHHHHHHhhc
Q psy7542 362 KDFQITWYDIIENGKDIAR 380 (762)
Q Consensus 362 ~~~piT~~el~~~i~~~~G 380 (762)
+|+++.|+++.+.+..|
T Consensus 480 --epvkI~dLAk~mi~l~g 496 (588)
T COG1086 480 --EPVKIIDLAKAMIELAG 496 (588)
T ss_pred --CCeEHHHHHHHHHHHhC
Confidence 89999999999999997
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=231.15 Aligned_cols=238 Identities=16% Similarity=0.183 Sum_probs=179.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.++++|||||||||||++++++|++. +.+|++++|...+........+. .....+++++.+|+
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~--G~~V~~l~R~~~~~~~~~~~~~~---------------~~~~~~v~~v~~Dl 120 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRR--GYNVVAVAREKSGIRGKNGKEDT---------------KKELPGAEVVFGDV 120 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEEechhhccccchhhHH---------------hhhcCCceEEEeeC
Confidence 36789999999999999999999998 67889999976432111001111 01124789999999
Q ss_pred CCCCCCCCHHHHHhhcC----CccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcc
Q psy7542 139 AVPDLGISAEDRQMLSE----TIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKV 214 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~----~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~ 214 (762)
++++ ++..+++ ++|+||||++.... .....+++|+.++.+++++|++. ++++||++||.++..
T Consensus 121 ~d~~------~l~~~~~~~~~~~D~Vi~~aa~~~~--~~~~~~~vn~~~~~~ll~aa~~~-gv~r~V~iSS~~v~~---- 187 (390)
T PLN02657 121 TDAD------SLRKVLFSEGDPVDVVVSCLASRTG--GVKDSWKIDYQATKNSLDAGREV-GAKHFVLLSAICVQK---- 187 (390)
T ss_pred CCHH------HHHHHHHHhCCCCcEEEECCccCCC--CCccchhhHHHHHHHHHHHHHHc-CCCEEEEEeeccccC----
Confidence 9876 6777766 59999999885321 12345688999999999999987 789999999986532
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLP 294 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~p 294 (762)
|. +.|..+|..+|+.+.... .+++++|+||+.+++..
T Consensus 188 --------p~-----------------------------~~~~~sK~~~E~~l~~~~-~gl~~tIlRp~~~~~~~----- 224 (390)
T PLN02657 188 --------PL-----------------------------LEFQRAKLKFEAELQALD-SDFTYSIVRPTAFFKSL----- 224 (390)
T ss_pred --------cc-----------------------------hHHHHHHHHHHHHHHhcc-CCCCEEEEccHHHhccc-----
Confidence 11 458889999999987622 28999999999988642
Q ss_pred CCCCCCCCchHHHHHHhcCCeEEEeeCCCccc-ccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHH
Q psy7542 295 GWTDNINGPTGLLIGAGKGIIRTMYCDYSTCA-DFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIE 373 (762)
Q Consensus 295 GWidn~~gp~~li~~~~~G~l~~i~gd~~~~~-d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~ 373 (762)
.+++..+..|....+.++++..+ ++|+++|+|.+++.++.++.. .+++||++++. +.+|+.|+++
T Consensus 225 ---------~~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~~~~~~~~~----~~~~~~Iggp~-~~~S~~Eia~ 290 (390)
T PLN02657 225 ---------GGQVEIVKDGGPYVMFGDGKLCACKPISEADLASFIADCVLDESK----INKVLPIGGPG-KALTPLEQGE 290 (390)
T ss_pred ---------HHHHHhhccCCceEEecCCcccccCceeHHHHHHHHHHHHhCccc----cCCEEEcCCCC-cccCHHHHHH
Confidence 12344455666666788887644 679999999999999876543 46899998741 5799999999
Q ss_pred HHHHhhccCC
Q psy7542 374 NGKDIARNKV 383 (762)
Q Consensus 374 ~i~~~~G~~~ 383 (762)
.+.+..|.+.
T Consensus 291 ~l~~~lG~~~ 300 (390)
T PLN02657 291 MLFRILGKEP 300 (390)
T ss_pred HHHHHhCCCC
Confidence 9999997653
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.3e-23 Score=226.93 Aligned_cols=236 Identities=15% Similarity=0.161 Sum_probs=170.8
Q ss_pred CCEEEEE----CCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 61 HKNIFIT----GASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 61 gk~VLVT----GATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
.++|||| |||||||++|++.|++. +++|++++|..... ..+. ...+..+.. ....+++++.|
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~--G~~V~~l~R~~~~~---~~~~----~~~~~~~~~-----l~~~~v~~v~~ 117 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKA--GHEVTLFTRGKEPS---QKMK----KEPFSRFSE-----LSSAGVKTVWG 117 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHC--CCEEEEEecCCcch---hhhc----cCchhhhhH-----hhhcCceEEEe
Confidence 4789999 99999999999999998 67899999976431 1110 000111100 00135889999
Q ss_pred ecCCCCCCCCHHHHHhh--cCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc-
Q psy7542 137 DVAVPDLGISAEDRQML--SETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK- 213 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l--~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~- 213 (762)
|+.+ +..+ ..++|+|||+++. ++.++.+++++|++. ++++|||+||+.+++...
T Consensus 118 D~~d---------~~~~~~~~~~d~Vi~~~~~-------------~~~~~~~ll~aa~~~-gvkr~V~~SS~~vyg~~~~ 174 (378)
T PLN00016 118 DPAD---------VKSKVAGAGFDVVYDNNGK-------------DLDEVEPVADWAKSP-GLKQFLFCSSAGVYKKSDE 174 (378)
T ss_pred cHHH---------HHhhhccCCccEEEeCCCC-------------CHHHHHHHHHHHHHc-CCCEEEEEccHhhcCCCCC
Confidence 9876 2222 2479999999763 245788999999987 899999999987665432
Q ss_pred -ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCC
Q psy7542 214 -VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDP 292 (762)
Q Consensus 214 -~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP 292 (762)
+..|... . +++. +|..+|.++++. +++++|+||+.+||+....
T Consensus 175 ~p~~E~~~---~-----------------------------~p~~-sK~~~E~~l~~~---~l~~~ilRp~~vyG~~~~~ 218 (378)
T PLN00016 175 PPHVEGDA---V-----------------------------KPKA-GHLEVEAYLQKL---GVNWTSFRPQYIYGPGNNK 218 (378)
T ss_pred CCCCCCCc---C-----------------------------CCcc-hHHHHHHHHHHc---CCCeEEEeceeEECCCCCC
Confidence 2223211 1 1222 899999988653 8999999999999986421
Q ss_pred CCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHH
Q psy7542 293 LPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDII 372 (762)
Q Consensus 293 ~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~ 372 (762)
.....++..+..|....+++++.+.+++++++|+|++++.++.++.. .+++||++++ +++|+.|++
T Consensus 219 --------~~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~----~~~~yni~~~--~~~s~~el~ 284 (378)
T PLN00016 219 --------DCEEWFFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFALVVGNPKA----AGQIFNIVSD--RAVTFDGMA 284 (378)
T ss_pred --------chHHHHHHHHHcCCceeecCCCCeeeceecHHHHHHHHHHHhcCccc----cCCEEEecCC--CccCHHHHH
Confidence 11122445566676666778889999999999999999999887543 3689999998 889999999
Q ss_pred HHHHHhhccCC
Q psy7542 373 ENGKDIARNKV 383 (762)
Q Consensus 373 ~~i~~~~G~~~ 383 (762)
+.+.+..|.+.
T Consensus 285 ~~i~~~~g~~~ 295 (378)
T PLN00016 285 KACAKAAGFPE 295 (378)
T ss_pred HHHHHHhCCCC
Confidence 99999987543
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=218.28 Aligned_cols=228 Identities=23% Similarity=0.226 Sum_probs=159.6
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+||||||+|+||++|++.|.++ ++.|+.+.|. ..|+.+.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~--~~~v~~~~r~--------------------------------------~~dl~d~ 40 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER--GYEVIATSRS--------------------------------------DLDLTDP 40 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT--SEEEEEESTT--------------------------------------CS-TTSH
T ss_pred CEEEEECCCCHHHHHHHHHHhhC--CCEEEEeCch--------------------------------------hcCCCCH
Confidence 68999999999999999999887 6778887664 3455554
Q ss_pred CCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc--c
Q psy7542 142 DLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK--V 214 (762)
Q Consensus 142 ~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~--~ 214 (762)
+ .+..+++ ..|+||||||..+.+ ...+.+..+|+.++.+++++|.+. + .++||+||.+++.... +
T Consensus 41 ~------~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~-~-~~li~~STd~VFdG~~~~~ 112 (286)
T PF04321_consen 41 E------AVAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKER-G-ARLIHISTDYVFDGDKGGP 112 (286)
T ss_dssp H------HHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHC-T--EEEEEEEGGGS-SSTSSS
T ss_pred H------HHHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHc-C-CcEEEeeccEEEcCCcccc
Confidence 3 5666655 479999999987654 356789999999999999999986 4 5899999998876542 5
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLP 294 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~p 294 (762)
..|+..+.|. |.|+.+|+.+|+.+++.. -...|+|++.+||....
T Consensus 113 y~E~d~~~P~-----------------------------~~YG~~K~~~E~~v~~~~---~~~~IlR~~~~~g~~~~--- 157 (286)
T PF04321_consen 113 YTEDDPPNPL-----------------------------NVYGRSKLEGEQAVRAAC---PNALILRTSWVYGPSGR--- 157 (286)
T ss_dssp B-TTS----S-----------------------------SHHHHHHHHHHHHHHHH----SSEEEEEE-SEESSSSS---
T ss_pred cccCCCCCCC-----------------------------CHHHHHHHHHHHHHHHhc---CCEEEEecceecccCCC---
Confidence 6787666665 789999999999999864 39999999999998322
Q ss_pred CCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHH
Q psy7542 295 GWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIEN 374 (762)
Q Consensus 295 GWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~ 374 (762)
.-...++..+..|....+. .+.....++++|+|+++..++.+.... ....++||++++ +.+|+.|+++.
T Consensus 158 ------~~~~~~~~~~~~~~~i~~~--~d~~~~p~~~~dlA~~i~~l~~~~~~~-~~~~Giyh~~~~--~~~S~~e~~~~ 226 (286)
T PF04321_consen 158 ------NFLRWLLRRLRQGEPIKLF--DDQYRSPTYVDDLARVILELIEKNLSG-ASPWGIYHLSGP--ERVSRYEFAEA 226 (286)
T ss_dssp ------SHHHHHHHHHHCTSEEEEE--SSCEE--EEHHHHHHHHHHHHHHHHH--GGG-EEEE---B--S-EEHHHHHHH
T ss_pred ------chhhhHHHHHhcCCeeEee--CCceeCCEEHHHHHHHHHHHHHhcccc-cccceeEEEecC--cccCHHHHHHH
Confidence 1123344555566654443 467789999999999999999876431 112589999999 88999999999
Q ss_pred HHHhhccCC
Q psy7542 375 GKDIARNKV 383 (762)
Q Consensus 375 i~~~~G~~~ 383 (762)
+.+.+|...
T Consensus 227 i~~~~~~~~ 235 (286)
T PF04321_consen 227 IAKILGLDP 235 (286)
T ss_dssp HHHHHTHCT
T ss_pred HHHHhCCCC
Confidence 999996554
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-23 Score=217.17 Aligned_cols=240 Identities=20% Similarity=0.200 Sum_probs=169.6
Q ss_pred EEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCCC
Q psy7542 64 IFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDL 143 (762)
Q Consensus 64 VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~L 143 (762)
||||||+|+||+.|+++|++.+| -+|++++|+... .-.++.- ++.....+.....+.++.||+.|.+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~---l~~l~~~--------l~~~~~~~~v~~~~~~vigDvrd~~- 67 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENK---LYELERE--------LRSRFPDPKVRFEIVPVIGDVRDKE- 67 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHH---HHHHHHH--------CHHHC--TTCEEEEE--CTSCCHHH-
T ss_pred CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhH---HHHHHHH--------HhhcccccCcccccCceeecccCHH-
Confidence 79999999999999999999833 289999996432 1122211 1111100111123456799999876
Q ss_pred CCCHHHHHhhcC--CccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccc
Q psy7542 144 GISAEDRQMLSE--TIHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEK 218 (762)
Q Consensus 144 GLs~~~l~~l~~--~vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~ 218 (762)
.+..+++ ++|+|||+||.-+. ...+.+++++||.||.+++++|.+. ++++||++||.-+..+
T Consensus 68 -----~l~~~~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~-~v~~~v~ISTDKAv~P------- 134 (293)
T PF02719_consen 68 -----RLNRIFEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEH-GVERFVFISTDKAVNP------- 134 (293)
T ss_dssp -----HHHHHTT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHT-T-SEEEEEEECGCSS--------
T ss_pred -----HHHHHHhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEccccccCCC-------
Confidence 6889988 89999999997553 4567789999999999999999998 8999999999844221
Q ss_pred cCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEEEeeeeeccCCCCCCC
Q psy7542 219 TYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMILRPSIIIPIWKDPLP 294 (762)
Q Consensus 219 ~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~IvRPs~V~G~~~eP~p 294 (762)
. |.||.||++||+++..++.. +..++++|.|+|.|+...-
T Consensus 135 -----t-----------------------------nvmGatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~GSV-- 178 (293)
T PF02719_consen 135 -----T-----------------------------NVMGATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRGSV-- 178 (293)
T ss_dssp -----------------------------------SHHHHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTTSC--
T ss_pred -----C-----------------------------cHHHHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCCcH--
Confidence 1 89999999999999998773 4689999999999985432
Q ss_pred CCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHH
Q psy7542 295 GWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIEN 374 (762)
Q Consensus 295 GWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~ 374 (762)
...+...+..|.+.++ .+++..+-|+.+++++..++.++..... +++|-.-.+ .|+++.|+++.
T Consensus 179 --------ip~F~~Qi~~g~PlTv-T~p~mtRffmti~EAv~Lvl~a~~~~~~-----geifvl~mg--~~v~I~dlA~~ 242 (293)
T PF02719_consen 179 --------IPLFKKQIKNGGPLTV-TDPDMTRFFMTIEEAVQLVLQAAALAKG-----GEIFVLDMG--EPVKILDLAEA 242 (293)
T ss_dssp --------HHHHHHHHHTTSSEEE-CETT-EEEEE-HHHHHHHHHHHHHH--T-----TEEEEE-----TCEECCCHHHH
T ss_pred --------HHHHHHHHHcCCccee-CCCCcEEEEecHHHHHHHHHHHHhhCCC-----CcEEEecCC--CCcCHHHHHHH
Confidence 2346677777865544 4789999999999999999999887654 789999988 89999999999
Q ss_pred HHHhhcc
Q psy7542 375 GKDIARN 381 (762)
Q Consensus 375 i~~~~G~ 381 (762)
+.+..|.
T Consensus 243 ~i~~~g~ 249 (293)
T PF02719_consen 243 MIELSGL 249 (293)
T ss_dssp HHHHTT-
T ss_pred HHhhccc
Confidence 9999864
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.9e-22 Score=206.75 Aligned_cols=222 Identities=22% Similarity=0.218 Sum_probs=178.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||++|.||..|++.|. . +..|+.+.|. ..|++++
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~--~~~v~a~~~~--------------------------------------~~Ditd~ 39 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-G--EFEVIATDRA--------------------------------------ELDITDP 39 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-C--CceEEeccCc--------------------------------------cccccCh
Confidence 459999999999999999887 3 6688888774 2688887
Q ss_pred CCCCCHHHHHhhcCC--ccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc--c
Q psy7542 142 DLGISAEDRQMLSET--IHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK--V 214 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~--vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~--~ 214 (762)
+ .+.+++++ .|+|||+||.+..+ ...+.++.+|..|+.++.++|.+. + ..+||+||-|++.... +
T Consensus 40 ~------~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~-g-a~lVhiSTDyVFDG~~~~~ 111 (281)
T COG1091 40 D------AVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEV-G-ARLVHISTDYVFDGEKGGP 111 (281)
T ss_pred H------HHHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHh-C-CeEEEeecceEecCCCCCC
Confidence 6 57777764 69999999998765 345679999999999999999997 4 4799999999976554 6
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLP 294 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~p 294 (762)
..|+..+.|. |-||.||+++|..++++ +-...|+|.+.|||....
T Consensus 112 Y~E~D~~~P~-----------------------------nvYG~sKl~GE~~v~~~---~~~~~I~Rtswv~g~~g~--- 156 (281)
T COG1091 112 YKETDTPNPL-----------------------------NVYGRSKLAGEEAVRAA---GPRHLILRTSWVYGEYGN--- 156 (281)
T ss_pred CCCCCCCCCh-----------------------------hhhhHHHHHHHHHHHHh---CCCEEEEEeeeeecCCCC---
Confidence 8888888887 78999999999999998 458999999999998632
Q ss_pred CCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHH
Q psy7542 295 GWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIEN 374 (762)
Q Consensus 295 GWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~ 374 (762)
|+ ...++.....|... ..-.++....+++.|+|.++..++..... +++||+++. ..+||-|+++.
T Consensus 157 ----nF--v~tml~la~~~~~l--~vv~Dq~gsPt~~~dlA~~i~~ll~~~~~-----~~~yH~~~~--g~~Swydfa~~ 221 (281)
T COG1091 157 ----NF--VKTMLRLAKEGKEL--KVVDDQYGSPTYTEDLADAILELLEKEKE-----GGVYHLVNS--GECSWYEFAKA 221 (281)
T ss_pred ----CH--HHHHHHHhhcCCce--EEECCeeeCCccHHHHHHHHHHHHhcccc-----CcEEEEeCC--CcccHHHHHHH
Confidence 11 11233334444432 23447888999999999999999887765 459999998 77999999999
Q ss_pred HHHhhccC
Q psy7542 375 GKDIARNK 382 (762)
Q Consensus 375 i~~~~G~~ 382 (762)
+.+..|.+
T Consensus 222 I~~~~~~~ 229 (281)
T COG1091 222 IFEEAGVD 229 (281)
T ss_pred HHHHhCCC
Confidence 99998533
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-22 Score=212.47 Aligned_cols=217 Identities=14% Similarity=0.106 Sum_probs=149.2
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
..|+|||||||||||++|++.|+++ +.+|+...+. +.
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~--g~~V~~~~~~-----------------------------------------~~ 44 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQ--GIDFHYGSGR-----------------------------------------LE 44 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhC--CCEEEEecCc-----------------------------------------cC
Confidence 4578999999999999999999998 4555433211 11
Q ss_pred CCCCCCCHHHHHhhc--CCccEEEEcccccCc------cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCC--ccc
Q psy7542 140 VPDLGISAEDRQMLS--ETIHIVYHIAATVRF------DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA--YCH 209 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~--~~vDiViH~AA~v~f------~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSa--y~~ 209 (762)
+.. .+...+ .++|+|||+||.... ......++++|+.||.+++++|++. +++ ++++||. |+.
T Consensus 45 ~~~------~v~~~l~~~~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~-gv~-~v~~sS~~vy~~ 116 (298)
T PLN02778 45 NRA------SLEADIDAVKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRER-GLV-LTNYATGCIFEY 116 (298)
T ss_pred CHH------HHHHHHHhcCCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCC-EEEEecceEeCC
Confidence 100 111111 268999999998642 2345678999999999999999997 676 4566655 433
Q ss_pred CCC------cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeee
Q psy7542 210 PKE------KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPS 283 (762)
Q Consensus 210 ~~~------~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs 283 (762)
... .++.|+..+.+. .+.|+.||+++|+++..+. +..++|++
T Consensus 117 ~~~~p~~~~~~~~Ee~~p~~~----------------------------~s~Yg~sK~~~E~~~~~y~----~~~~lr~~ 164 (298)
T PLN02778 117 DDAHPLGSGIGFKEEDTPNFT----------------------------GSFYSKTKAMVEELLKNYE----NVCTLRVR 164 (298)
T ss_pred CCCCCcccCCCCCcCCCCCCC----------------------------CCchHHHHHHHHHHHHHhh----ccEEeeec
Confidence 221 123443222111 1789999999999999875 46788887
Q ss_pred eeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCC
Q psy7542 284 IIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKD 363 (762)
Q Consensus 284 ~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~ 363 (762)
++++... ..+..++..+..+......+ .++++++|++++++.++.... .++||++++
T Consensus 165 ~~~~~~~----------~~~~~fi~~~~~~~~~~~~~-----~s~~yv~D~v~al~~~l~~~~------~g~yNigs~-- 221 (298)
T PLN02778 165 MPISSDL----------SNPRNFITKITRYEKVVNIP-----NSMTILDELLPISIEMAKRNL------TGIYNFTNP-- 221 (298)
T ss_pred ccCCccc----------ccHHHHHHHHHcCCCeeEcC-----CCCEEHHHHHHHHHHHHhCCC------CCeEEeCCC--
Confidence 7766521 11234566666665333322 379999999999999886432 359999998
Q ss_pred CcccHHHHHHHHHHhhccC
Q psy7542 364 FQITWYDIIENGKDIARNK 382 (762)
Q Consensus 364 ~piT~~el~~~i~~~~G~~ 382 (762)
.++|+.|+++.+++.+|..
T Consensus 222 ~~iS~~el~~~i~~~~~~~ 240 (298)
T PLN02778 222 GVVSHNEILEMYRDYIDPS 240 (298)
T ss_pred CcccHHHHHHHHHHHhCCC
Confidence 7999999999999999643
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=232.74 Aligned_cols=241 Identities=15% Similarity=0.086 Sum_probs=174.4
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|+|||||||||++++++|++. +++|++++|..... ...++.++.+|+.++
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~--G~~Vv~l~R~~~~~--------------------------~~~~v~~v~gDL~D~ 52 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQ--GHEVVGIARHRPDS--------------------------WPSSADFIAADIRDA 52 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEECCchhh--------------------------cccCceEEEeeCCCH
Confidence 57999999999999999999998 67889999863210 013578899999987
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccCC
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYP 221 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~~ 221 (762)
+ ++..+++++|+|||+||.... ..++|+.||.+++++|++. ++++||++||..
T Consensus 53 ~------~l~~al~~vD~VVHlAa~~~~------~~~vNv~GT~nLLeAa~~~-gvkr~V~iSS~~-------------- 105 (854)
T PRK05865 53 T------AVESAMTGADVVAHCAWVRGR------NDHINIDGTANVLKAMAET-GTGRIVFTSSGH-------------- 105 (854)
T ss_pred H------HHHHHHhCCCEEEECCCcccc------hHHHHHHHHHHHHHHHHHc-CCCeEEEECCcH--------------
Confidence 6 788888899999999986432 4688999999999999987 788999999841
Q ss_pred CCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCCC
Q psy7542 222 PPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNIN 301 (762)
Q Consensus 222 ~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~~ 301 (762)
|..+|+++.++ +++++|+||++|||+.. +
T Consensus 106 --------------------------------------K~aaE~ll~~~---gl~~vILRp~~VYGP~~---~------- 134 (854)
T PRK05865 106 --------------------------------------QPRVEQMLADC---GLEWVAVRCALIFGRNV---D------- 134 (854)
T ss_pred --------------------------------------HHHHHHHHHHc---CCCEEEEEeceEeCCCh---H-------
Confidence 67788888654 89999999999999841 1
Q ss_pred CchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHhhcc
Q psy7542 302 GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIARN 381 (762)
Q Consensus 302 gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~~G~ 381 (762)
.++..+. .......++++..+|+|||+|+|++++.++..... .+++||++++ +++|+.|+++.+.+.. .
T Consensus 135 ---~~i~~ll-~~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~~~~----~ggvyNIgsg--~~~Si~EIae~l~~~~-~ 203 (854)
T PRK05865 135 ---NWVQRLF-ALPVLPAGYADRVVQVVHSDDAQRLLVRALLDTVI----DSGPVNLAAP--GELTFRRIAAALGRPM-V 203 (854)
T ss_pred ---HHHHHHh-cCceeccCCCCceEeeeeHHHHHHHHHHHHhCCCc----CCCeEEEECC--CcccHHHHHHHHhhhh-c
Confidence 1222222 11112234456677999999999999998865432 2579999998 8899999999988743 1
Q ss_pred CCC--Cccc----cc------cCCccccc----cCCCchhhHHHHHHhhhhhhhc
Q psy7542 382 KVP--LNNV----LW------YPGGAMTN----RGYEPVLKRVHNRIKKGFDIFE 420 (762)
Q Consensus 382 ~~P--~~~~----~w------~p~~~~~~----lG~kP~l~~l~~ki~~~~~~l~ 420 (762)
..+ .... .. .+...... +||+|++ .+.+.+.+..++++
T Consensus 204 ~v~~~~~~~~~~~~~~~~~~~~~~~D~sKar~~LGw~P~~-sLeeGL~dti~~~r 257 (854)
T PRK05865 204 PIGSPVLRRVTSFAELELLHSAPLMDVTLLRDRWGFQPAW-NAEECLEDFTLAVR 257 (854)
T ss_pred cCCchhhhhccchhhhhcccCCccCCHHHHHHHhCCCCCC-CHHHHHHHHHHHHH
Confidence 111 1000 00 00011111 8999987 67777777655543
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-19 Score=209.05 Aligned_cols=203 Identities=16% Similarity=0.127 Sum_probs=147.2
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++. +++|++++|.... ....+++++.+|+.++
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~--G~~Vi~ldr~~~~--------------------------~~~~~ve~v~~Dl~d~ 52 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAA--GHTVSGIAQHPHD--------------------------ALDPRVDYVCASLRNP 52 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEeCChhh--------------------------cccCCceEEEccCCCH
Confidence 57999999999999999999998 6788999985321 0123678999999876
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccCC
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYP 221 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~~ 221 (762)
. +..++.++|+|||+|+.... . ...+|+.|+.+++++|++. ++ ++||+||+++..
T Consensus 53 ~-------l~~al~~~D~VIHLAa~~~~-~----~~~vNv~Gt~nLleAA~~~-Gv-RiV~~SS~~G~~----------- 107 (699)
T PRK12320 53 V-------LQELAGEADAVIHLAPVDTS-A----PGGVGITGLAHVANAAARA-GA-RLLFVSQAAGRP----------- 107 (699)
T ss_pred H-------HHHHhcCCCEEEEcCccCcc-c----hhhHHHHHHHHHHHHHHHc-CC-eEEEEECCCCCC-----------
Confidence 3 56677889999999986421 1 2358999999999999987 55 699999986321
Q ss_pred CCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCCC
Q psy7542 222 PPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNIN 301 (762)
Q Consensus 222 ~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~~ 301 (762)
..|. .+|.++..+ +++++|+|+++|||+...+.
T Consensus 108 --------------------------------~~~~----~aE~ll~~~---~~p~~ILR~~nVYGp~~~~~-------- 140 (699)
T PRK12320 108 --------------------------------ELYR----QAETLVSTG---WAPSLVIRIAPPVGRQLDWM-------- 140 (699)
T ss_pred --------------------------------cccc----HHHHHHHhc---CCCEEEEeCceecCCCCccc--------
Confidence 0121 367666543 69999999999999853311
Q ss_pred CchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHhh
Q psy7542 302 GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIA 379 (762)
Q Consensus 302 gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~~ 379 (762)
...++........ ......+|+|||++++++.++.... .++||++++ +.+|+.|+++.+....
T Consensus 141 -~~r~I~~~l~~~~------~~~pI~vIyVdDvv~alv~al~~~~------~GiyNIG~~--~~~Si~el~~~i~~~~ 203 (699)
T PRK12320 141 -VCRTVATLLRSKV------SARPIRVLHLDDLVRFLVLALNTDR------NGVVDLATP--DTTNVVTAWRLLRSVD 203 (699)
T ss_pred -HhHHHHHHHHHHH------cCCceEEEEHHHHHHHHHHHHhCCC------CCEEEEeCC--CeeEHHHHHHHHHHhC
Confidence 1122332222111 1223446999999999999887532 249999999 8899999999987763
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.7e-18 Score=176.28 Aligned_cols=230 Identities=18% Similarity=0.204 Sum_probs=157.0
Q ss_pred EEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCCC
Q psy7542 64 IFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDL 143 (762)
Q Consensus 64 VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~L 143 (762)
|+|||||||||++|+..|.+. +++|++|+|.....+. .....+..+.
T Consensus 1 IliTGgTGlIG~~L~~~L~~~--gh~v~iltR~~~~~~~-----------------------~~~~~v~~~~-------- 47 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKG--GHQVTILTRRPPKASQ-----------------------NLHPNVTLWE-------- 47 (297)
T ss_pred CeEeccccchhHHHHHHHHhC--CCeEEEEEcCCcchhh-----------------------hcCccccccc--------
Confidence 689999999999999999998 7788999998754211 0111222111
Q ss_pred CCCHHHHHhhcC-CccEEEEcccccCc----cccHH-HHHHHhHHHHHHHHHHHHHcC-CccEEEEEeCC--cccCCCcc
Q psy7542 144 GISAEDRQMLSE-TIHIVYHIAATVRF----DDYMQ-TYVFLNTRGTRDMLNLSKQMI-HLQLFVYVSTA--YCHPKEKV 214 (762)
Q Consensus 144 GLs~~~l~~l~~-~vDiViH~AA~v~f----~~~l~-~~~~~NV~GT~~LLelA~~~~-~lk~fV~vSSa--y~~~~~~~ 214 (762)
.+..+.. ++|+|||+||..=+ +...+ ..++.-+..|+.|.++..++. +++.||.-|.+ |++.....
T Consensus 48 -----~~~~~~~~~~DavINLAG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~ 122 (297)
T COG1090 48 -----GLADALTLGIDAVINLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRV 122 (297)
T ss_pred -----hhhhcccCCCCEEEECCCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCcee
Confidence 1233333 79999999997643 33333 478889999999999998653 45566666655 66666667
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHH---HHHHHHHHHcCCCEEEEeeeeeccCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLC---EGVVTEYMEAGMPCMILRPSIIIPIWKD 291 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~a---E~lv~~~~~~glpv~IvRPs~V~G~~~e 291 (762)
++|+..+. . +++--+| |+....+...|.+++++|.|+|.|+...
T Consensus 123 ~tE~~~~g-~--------------------------------~Fla~lc~~WE~~a~~a~~~gtRvvllRtGvVLs~~GG 169 (297)
T COG1090 123 VTEESPPG-D--------------------------------DFLAQLCQDWEEEALQAQQLGTRVVLLRTGVVLSPDGG 169 (297)
T ss_pred eecCCCCC-C--------------------------------ChHHHHHHHHHHHHhhhhhcCceEEEEEEEEEecCCCc
Confidence 77762221 1 1111111 3333333333899999999999997421
Q ss_pred CCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHH
Q psy7542 292 PLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDI 371 (762)
Q Consensus 292 P~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el 371 (762)
.-+...-......|. -.|+|.+..+|||+||++++|..+..+... ...||++++ +|++..+|
T Consensus 170 --------aL~~m~~~fk~glGG---~~GsGrQ~~SWIhieD~v~~I~fll~~~~l-----sGp~N~taP--~PV~~~~F 231 (297)
T COG1090 170 --------ALGKMLPLFKLGLGG---KLGSGRQWFSWIHIEDLVNAILFLLENEQL-----SGPFNLTAP--NPVRNKEF 231 (297)
T ss_pred --------chhhhcchhhhccCC---ccCCCCceeeeeeHHHHHHHHHHHHhCcCC-----CCcccccCC--CcCcHHHH
Confidence 111111112222222 358999999999999999999999998776 478999999 99999999
Q ss_pred HHHHHHhhccC
Q psy7542 372 IENGKDIARNK 382 (762)
Q Consensus 372 ~~~i~~~~G~~ 382 (762)
...+.+..++.
T Consensus 232 ~~al~r~l~RP 242 (297)
T COG1090 232 AHALGRALHRP 242 (297)
T ss_pred HHHHHHHhCCC
Confidence 99999999433
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-18 Score=204.12 Aligned_cols=214 Identities=16% Similarity=0.118 Sum_probs=148.7
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
..|+|||||||||||++|++.|.+. +++|.. ..+|++
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~--g~~v~~-----------------------------------------~~~~l~ 415 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQ--GIAYEY-----------------------------------------GKGRLE 415 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhC--CCeEEe-----------------------------------------eccccc
Confidence 4579999999999999999999987 444310 112343
Q ss_pred CCCCCCCHHHHHhhcC--CccEEEEcccccC---cc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC
Q psy7542 140 VPDLGISAEDRQMLSE--TIHIVYHIAATVR---FD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK 211 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~--~vDiViH~AA~v~---f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~ 211 (762)
+++ .+...++ ++|+||||||... .+ .....++++|+.||.+|+++|++. +++ ++++||.++++.
T Consensus 416 d~~------~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~-g~~-~v~~Ss~~v~~~ 487 (668)
T PLN02260 416 DRS------SLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCREN-GLL-MMNFATGCIFEY 487 (668)
T ss_pred cHH------HHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHc-CCe-EEEEcccceecC
Confidence 332 3333333 6899999999763 22 245678999999999999999998 665 678888755432
Q ss_pred --------CcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeee
Q psy7542 212 --------EKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPS 283 (762)
Q Consensus 212 --------~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs 283 (762)
..++.|+..+.|. .+.|+.||+++|+++..+. ...++|+.
T Consensus 488 ~~~~~~~~~~p~~E~~~~~~~----------------------------~~~Yg~sK~~~E~~~~~~~----~~~~~r~~ 535 (668)
T PLN02260 488 DAKHPEGSGIGFKEEDKPNFT----------------------------GSFYSKTKAMVEELLREYD----NVCTLRVR 535 (668)
T ss_pred CcccccccCCCCCcCCCCCCC----------------------------CChhhHHHHHHHHHHHhhh----hheEEEEE
Confidence 1244554322211 1789999999999998873 46788888
Q ss_pred eeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCC
Q psy7542 284 IIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKD 363 (762)
Q Consensus 284 ~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~ 363 (762)
.+||... .++..++..+.++...... ..+...+|+++.+++.++... .+++||++++
T Consensus 536 ~~~~~~~----------~~~~nfv~~~~~~~~~~~v-----p~~~~~~~~~~~~~~~l~~~~------~~giyni~~~-- 592 (668)
T PLN02260 536 MPISSDL----------SNPRNFITKISRYNKVVNI-----PNSMTVLDELLPISIEMAKRN------LRGIWNFTNP-- 592 (668)
T ss_pred EecccCC----------CCccHHHHHHhccceeecc-----CCCceehhhHHHHHHHHHHhC------CCceEEecCC--
Confidence 8886431 1233455555544332111 134677899998888877632 2479999998
Q ss_pred CcccHHHHHHHHHHhh
Q psy7542 364 FQITWYDIIENGKDIA 379 (762)
Q Consensus 364 ~piT~~el~~~i~~~~ 379 (762)
..+||.|+++.+.+..
T Consensus 593 ~~~s~~e~a~~i~~~~ 608 (668)
T PLN02260 593 GVVSHNEILEMYKDYI 608 (668)
T ss_pred CcCcHHHHHHHHHHhc
Confidence 7899999999999877
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=179.41 Aligned_cols=259 Identities=19% Similarity=0.162 Sum_probs=195.3
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|+.||||-||+-|++|++.||.. |..|+.+.|..+..+. .|+ .+.+.+ .....++..+.||++|
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLek--GY~VhGi~Rrss~~n~-~ri-~L~~~~-----------~~~~~~l~l~~gDLtD 66 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEK--GYEVHGIKRRSSSFNT-PRI-HLYEDP-----------HLNDPRLHLHYGDLTD 66 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhc--CcEEEEEeeccccCCc-ccc-eecccc-----------ccCCceeEEEeccccc
Confidence 588999999999999999999999 7889999998654332 333 222221 1123569999999999
Q ss_pred CCCCCCHHHHHhhcCC--ccEEEEccccc----CccccHHHHHHHhHHHHHHHHHHHHHcCC-ccEEEEEeCC--cccCC
Q psy7542 141 PDLGISAEDRQMLSET--IHIVYHIAATV----RFDDYMQTYVFLNTRGTRDMLNLSKQMIH-LQLFVYVSTA--YCHPK 211 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~--vDiViH~AA~v----~f~~~l~~~~~~NV~GT~~LLelA~~~~~-lk~fV~vSSa--y~~~~ 211 (762)
.. .+.++++. .|-|+|+||.. +|+.|. ...+++..||.+||++.+.... -.+|.+.||. |+...
T Consensus 67 ~~------~l~r~l~~v~PdEIYNLaAQS~V~vSFe~P~-~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~ 139 (345)
T COG1089 67 SS------NLLRILEEVQPDEIYNLAAQSHVGVSFEQPE-YTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQ 139 (345)
T ss_pred hH------HHHHHHHhcCchhheeccccccccccccCcc-eeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcc
Confidence 76 67777775 59999999975 455553 5678899999999999998632 3689999997 66666
Q ss_pred CcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCC
Q psy7542 212 EKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWK 290 (762)
Q Consensus 212 ~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~ 290 (762)
..+..|..+..|. ++|+.+|..|-.+...|.+. |+-.+. |+.+ ..+
T Consensus 140 ~~pq~E~TPFyPr-----------------------------SPYAvAKlYa~W~tvNYResYgl~Acn---GILF-NHE 186 (345)
T COG1089 140 EIPQKETTPFYPR-----------------------------SPYAVAKLYAYWITVNYRESYGLFACN---GILF-NHE 186 (345)
T ss_pred cCccccCCCCCCC-----------------------------CHHHHHHHHHHheeeehHhhcCceeec---ceee-cCC
Confidence 6677887555554 78999999999999999886 766653 3333 334
Q ss_pred CCCCCCCCCCCCchHHHHHHhcCCeE-EEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHH
Q psy7542 291 DPLPGWTDNINGPTGLLIGAGKGIIR-TMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWY 369 (762)
Q Consensus 291 eP~pGWidn~~gp~~li~~~~~G~l~-~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~ 369 (762)
.|..|-.--....+..+..+..|... ...|+.+..+||-++.|-++++..++....+ +.|.++++ ...|.+
T Consensus 187 SP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYVe~mwlmLQq~~P------ddyViATg--~t~sVr 258 (345)
T COG1089 187 SPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEAMWLMLQQEEP------DDYVIATG--ETHSVR 258 (345)
T ss_pred CCCCccceehHHHHHHHHHHHccccceEEeccccccccccchHHHHHHHHHHHccCCC------CceEEecC--ceeeHH
Confidence 55554221112233445556667654 4578999999999999999999999987754 68999999 899999
Q ss_pred HHHHHHHHhhccC
Q psy7542 370 DIIENGKDIARNK 382 (762)
Q Consensus 370 el~~~i~~~~G~~ 382 (762)
|++++..+..|.+
T Consensus 259 efv~~Af~~~g~~ 271 (345)
T COG1089 259 EFVELAFEMVGID 271 (345)
T ss_pred HHHHHHHHHcCce
Confidence 9999999998744
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.6e-18 Score=179.19 Aligned_cols=237 Identities=19% Similarity=0.123 Sum_probs=157.7
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
.|+|||||||||||++++++|++. +.+|+++.|.. ++++++.. ....++.++.+|+++
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~--g~~v~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~D~~~ 59 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLAR--GDRVAATVRRP------DALDDLKA--------------RYGDRLWVLQLDVTD 59 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH--------------hccCceEEEEccCCC
Confidence 368999999999999999999998 67889998863 22322211 112478899999998
Q ss_pred CCCCCCHHHHHhhc-------CCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHH---cCCccEEEEE
Q psy7542 141 PDLGISAEDRQMLS-------ETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQ---MIHLQLFVYV 203 (762)
Q Consensus 141 ~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~---~~~lk~fV~v 203 (762)
++ ++..++ ..+|+|||+||..... +.++..+++|+.|+.++++++.. ..+.++||++
T Consensus 60 ~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ 133 (276)
T PRK06482 60 SA------AVRAVVDRAFAALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQV 133 (276)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 76 344333 4589999999976432 33566889999999999999832 1256799999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~I 279 (762)
||..+.... |. .+.|+.||+..|.+++.++.. |+++++
T Consensus 134 sS~~~~~~~----------~~----------------------------~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~ 175 (276)
T PRK06482 134 SSEGGQIAY----------PG----------------------------FSLYHATKWGIEGFVEAVAQEVAPFGIEFTI 175 (276)
T ss_pred cCcccccCC----------CC----------------------------CchhHHHHHHHHHHHHHHHHHhhccCcEEEE
Confidence 997542110 10 168999999999999887652 899999
Q ss_pred EeeeeeccCCCCCC--CCCCCCCC-CchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 280 LRPSIIIPIWKDPL--PGWTDNIN-GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 280 vRPs~V~G~~~eP~--pGWidn~~-gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+|||.+..+..... ..+..... .+...+...... +.. .-+..++|++++++.++..... +..|
T Consensus 176 v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~-~~~~d~~~~~~a~~~~~~~~~~-----~~~~ 241 (276)
T PRK06482 176 VEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRALAD--------GSF-AIPGDPQKMVQAMIASADQTPA-----PRRL 241 (276)
T ss_pred EeCCccccCCcccccccCCCccccchhhHHHHHHHhh--------ccC-CCCCCHHHHHHHHHHHHcCCCC-----CeEE
Confidence 99998833321100 00000000 111111111111 111 1135789999999999875533 4679
Q ss_pred EecCCCCCcccHHHHHHHHHHhh
Q psy7542 357 NLTANKDFQITWYDIIENGKDIA 379 (762)
Q Consensus 357 Ni~s~~~~piT~~el~~~i~~~~ 379 (762)
|++++ +..+..|+++.+.+..
T Consensus 242 ~~g~~--~~~~~~~~~~~~~~~~ 262 (276)
T PRK06482 242 TLGSD--AYASIRAALSERLAAL 262 (276)
T ss_pred ecChH--HHHHHHHHHHHHHHHH
Confidence 99998 7777777777666655
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-18 Score=182.23 Aligned_cols=211 Identities=13% Similarity=0.154 Sum_probs=150.7
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPD 142 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~ 142 (762)
+||||||||++|++++++|+++ +++|++++|...... ..+++.+.+|+.|++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~--g~~V~~~~R~~~~~~--------------------------~~~~~~~~~d~~d~~ 52 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA--SVPFLVASRSSSSSA--------------------------GPNEKHVKFDWLDED 52 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC--CCcEEEEeCCCcccc--------------------------CCCCccccccCCCHH
Confidence 4899999999999999999998 678899999764310 135667889998876
Q ss_pred CCCCHHHHHhhc------CC-ccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCccc
Q psy7542 143 LGISAEDRQMLS------ET-IHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVL 215 (762)
Q Consensus 143 LGLs~~~l~~l~------~~-vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i 215 (762)
.+..++ ++ +|.|||+++... .. ...+.+++++|++. ++++||++||..+....
T Consensus 53 ------~l~~a~~~~~~~~g~~d~v~~~~~~~~--~~--------~~~~~~~i~aa~~~-gv~~~V~~Ss~~~~~~~--- 112 (285)
T TIGR03649 53 ------TWDNPFSSDDGMEPEISAVYLVAPPIP--DL--------APPMIKFIDFARSK-GVRRFVLLSASIIEKGG--- 112 (285)
T ss_pred ------HHHHHHhcccCcCCceeEEEEeCCCCC--Ch--------hHHHHHHHHHHHHc-CCCEEEEeeccccCCCC---
Confidence 677766 56 999999987532 11 23456899999998 89999999997543210
Q ss_pred ccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCC
Q psy7542 216 EEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPG 295 (762)
Q Consensus 216 ~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pG 295 (762)
+ .+...|..+.+. .|++++++||+.++.....+.
T Consensus 113 -------~-----------------------------------~~~~~~~~l~~~--~gi~~tilRp~~f~~~~~~~~-- 146 (285)
T TIGR03649 113 -------P-----------------------------------AMGQVHAHLDSL--GGVEYTVLRPTWFMENFSEEF-- 146 (285)
T ss_pred -------c-----------------------------------hHHHHHHHHHhc--cCCCEEEEeccHHhhhhcccc--
Confidence 0 011223333321 289999999998775421110
Q ss_pred CCCCCCCchHHHHHHh-cCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHH
Q psy7542 296 WTDNINGPTGLLIGAG-KGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIEN 374 (762)
Q Consensus 296 Widn~~gp~~li~~~~-~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~ 374 (762)
....+. .|. .+.+.++...++|+++|+|+++..++..+.. .+++|+++++ +.+|+.|+++.
T Consensus 147 ----------~~~~~~~~~~--~~~~~g~~~~~~v~~~Dva~~~~~~l~~~~~----~~~~~~l~g~--~~~s~~eia~~ 208 (285)
T TIGR03649 147 ----------HVEAIRKENK--IYSATGDGKIPFVSADDIARVAYRALTDKVA----PNTDYVVLGP--ELLTYDDVAEI 208 (285)
T ss_pred ----------cccccccCCe--EEecCCCCccCcccHHHHHHHHHHHhcCCCc----CCCeEEeeCC--ccCCHHHHHHH
Confidence 001111 122 2345678889999999999999999877544 3678999998 89999999999
Q ss_pred HHHhhccCCCC
Q psy7542 375 GKDIARNKVPL 385 (762)
Q Consensus 375 i~~~~G~~~P~ 385 (762)
+.+.+|++.+.
T Consensus 209 l~~~~g~~v~~ 219 (285)
T TIGR03649 209 LSRVLGRKITH 219 (285)
T ss_pred HHHHhCCceEE
Confidence 99999876543
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22 | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=160.47 Aligned_cols=102 Identities=42% Similarity=0.668 Sum_probs=87.1
Q ss_pred CccccccceeeecCCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhh
Q psy7542 519 ENCISVSGYRLIECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRN 598 (762)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (762)
+++|+.......+.+++|++|.|+|...+..|.|.||||||..||+ ++++.
T Consensus 2 ~V~Ip~~~~~~~~~~~~y~~Y~I~v~~~~~~~~v~RRYseF~~Lh~-----------------------------~L~~~ 52 (110)
T cd06880 2 EVSIPSYRLEVDESEKPYTVFTIEVLVNGRRHTVEKRYSEFHALHK-----------------------------KLKKS 52 (110)
T ss_pred EEEeCcEEEeeCCCCCCeEEEEEEEEECCeEEEEEccHHHHHHHHH-----------------------------HHHHH
Confidence 3444444433333458999999999999999999999999999998 66665
Q ss_pred chhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHHhcCC
Q psy7542 599 CKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGP 678 (762)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (762)
+ ..|.||+|++.+.+++++++||.+||.||+.+++...
T Consensus 53 ~------------------------------------------~~p~~P~K~~~~~~~~~ie~Rr~~Le~yL~~ll~~~~ 90 (110)
T cd06880 53 I------------------------------------------KTPDFPPKRVRNWNPKVLEQRRQGLEAYLQGLLKINE 90 (110)
T ss_pred C------------------------------------------CCCCCCCCCccCCCHHHHHHHHHHHHHHHHHHHcCcc
Confidence 5 5789999999999999999999999999999999888
Q ss_pred ChHHHHhhhCCCC
Q psy7542 679 SRNQVLAFLGVNS 691 (762)
Q Consensus 679 ~~~~~~~~~~~~~ 691 (762)
...+|++||++++
T Consensus 91 ~s~~l~~FL~~~~ 103 (110)
T cd06880 91 LPKQLLDFLGVRH 103 (110)
T ss_pred ccHHHHHHhCCCC
Confidence 5699999999993
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known. |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=175.02 Aligned_cols=234 Identities=16% Similarity=0.145 Sum_probs=157.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.++|+||||||||++|+.++++|++. +++|+++.|... +..+.+ + ...+++++.+|+
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~--g~~V~~~~R~~~------~~~~~~--------------~-~~~~~~~~~~Dl 71 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAK--GFAVKAGVRDVD------KAKTSL--------------P-QDPSLQIVRADV 71 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhC--CCEEEEEecCHH------HHHHhc--------------c-cCCceEEEEeeC
Confidence 36789999999999999999999998 678899998743 121111 1 124688999999
Q ss_pred CCCCCCCCHHHHHhhc-CCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCccccc
Q psy7542 139 AVPDLGISAEDRQMLS-ETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEE 217 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E 217 (762)
++.. +++...+ .++|+|||+++......+ ...+++|+.|+.++++++++. ++++||++||..+++.... +
T Consensus 72 ~d~~-----~~l~~~~~~~~d~vi~~~g~~~~~~~-~~~~~~n~~~~~~ll~a~~~~-~~~~iV~iSS~~v~g~~~~--~ 142 (251)
T PLN00141 72 TEGS-----DKLVEAIGDDSDAVICATGFRRSFDP-FAPWKVDNFGTVNLVEACRKA-GVTRFILVSSILVNGAAMG--Q 142 (251)
T ss_pred CCCH-----HHHHHHhhcCCCEEEECCCCCcCCCC-CCceeeehHHHHHHHHHHHHc-CCCEEEEEccccccCCCcc--c
Confidence 9742 2455555 689999999886422122 223578999999999999886 7899999999866543211 0
Q ss_pred ccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCC
Q psy7542 218 KTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWT 297 (762)
Q Consensus 218 ~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWi 297 (762)
....+..+. .+ ...|..+|..+|+++++. +++++++|||.+++....
T Consensus 143 -~~~~~~~~~-----------------~~------~~~~~~~k~~~e~~l~~~---gi~~~iirpg~~~~~~~~------ 189 (251)
T PLN00141 143 -ILNPAYIFL-----------------NL------FGLTLVAKLQAEKYIRKS---GINYTIVRPGGLTNDPPT------ 189 (251)
T ss_pred -ccCcchhHH-----------------HH------HHHHHHHHHHHHHHHHhc---CCcEEEEECCCccCCCCC------
Confidence 000000000 00 023556788899887653 899999999988765211
Q ss_pred CCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCc-ccHHHHHHHHH
Q psy7542 298 DNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQ-ITWYDIIENGK 376 (762)
Q Consensus 298 dn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~p-iT~~el~~~i~ 376 (762)
|... +.........+|+.+|+|+++..++..+.. ...++.+.+.+.++ .++.+++..++
T Consensus 190 ---------------~~~~-~~~~~~~~~~~i~~~dvA~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (251)
T PLN00141 190 ---------------GNIV-MEPEDTLYEGSISRDQVAEVAVEALLCPES----SYKVVEIVARADAPKRSYKDLFASIK 249 (251)
T ss_pred ---------------ceEE-ECCCCccccCcccHHHHHHHHHHHhcChhh----cCcEEEEecCCCCCchhHHHHHHHhh
Confidence 1111 111111123579999999999999887654 35678888754453 89999988776
Q ss_pred H
Q psy7542 377 D 377 (762)
Q Consensus 377 ~ 377 (762)
+
T Consensus 250 ~ 250 (251)
T PLN00141 250 Q 250 (251)
T ss_pred c
Confidence 4
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.3e-18 Score=166.97 Aligned_cols=183 Identities=22% Similarity=0.274 Sum_probs=139.7
Q ss_pred EEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCCC
Q psy7542 64 IFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDL 143 (762)
Q Consensus 64 VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~L 143 (762)
|+|+||||++|+.++++|+++ +++|++++|++... +. ..+++++.+|+.+++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~--~~~V~~~~R~~~~~------------------------~~-~~~~~~~~~d~~d~~- 52 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR--GHEVTALVRSPSKA------------------------ED-SPGVEIIQGDLFDPD- 52 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TSEEEEEESSGGGH------------------------HH-CTTEEEEESCTTCHH-
T ss_pred eEEECCCChHHHHHHHHHHHC--CCEEEEEecCchhc------------------------cc-ccccccceeeehhhh-
Confidence 799999999999999999999 68999999986421 11 478999999998875
Q ss_pred CCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccCCCC
Q psy7542 144 GISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPP 223 (762)
Q Consensus 144 GLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~~~p 223 (762)
++.+.++++|+|||+++.... +...+++++++|+++ +++++|++||+.+.......... .
T Consensus 53 -----~~~~al~~~d~vi~~~~~~~~----------~~~~~~~~~~a~~~~-~~~~~v~~s~~~~~~~~~~~~~~----~ 112 (183)
T PF13460_consen 53 -----SVKAALKGADAVIHAAGPPPK----------DVDAAKNIIEAAKKA-GVKRVVYLSSAGVYRDPPGLFSD----E 112 (183)
T ss_dssp -----HHHHHHTTSSEEEECCHSTTT----------HHHHHHHHHHHHHHT-TSSEEEEEEETTGTTTCTSEEEG----G
T ss_pred -----hhhhhhhhcchhhhhhhhhcc----------ccccccccccccccc-ccccceeeeccccCCCCCccccc----c
Confidence 789999999999999976433 277889999999998 79999999999766543211000 0
Q ss_pred CChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCCCCc
Q psy7542 224 VSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNINGP 303 (762)
Q Consensus 224 ~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~~gp 303 (762)
. .+.+..|...|..+|+.+++. +++++++||+.++|.....
T Consensus 113 ~-------------------------~~~~~~~~~~~~~~e~~~~~~---~~~~~ivrp~~~~~~~~~~----------- 153 (183)
T PF13460_consen 113 D-------------------------KPIFPEYARDKREAEEALRES---GLNWTIVRPGWIYGNPSRS----------- 153 (183)
T ss_dssp T-------------------------CGGGHHHHHHHHHHHHHHHHS---TSEEEEEEESEEEBTTSSS-----------
T ss_pred c-------------------------ccchhhhHHHHHHHHHHHHhc---CCCEEEEECcEeEeCCCcc-----------
Confidence 0 001146889999999998643 8999999999999985321
Q ss_pred hHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhc
Q psy7542 304 TGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWN 344 (762)
Q Consensus 304 ~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~ 344 (762)
...+...+.....+|+++|+|.+++.++.+
T Consensus 154 -----------~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~ 183 (183)
T PF13460_consen 154 -----------YRLIKEGGPQGVNFISREDVAKAIVEALEN 183 (183)
T ss_dssp -----------EEEESSTSTTSHCEEEHHHHHHHHHHHHH-
T ss_pred -----------eeEEeccCCCCcCcCCHHHHHHHHHHHhCC
Confidence 111111445667999999999999998763
|
... |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-17 Score=171.25 Aligned_cols=229 Identities=15% Similarity=0.151 Sum_probs=151.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++||||||||+||++++++|++. +.+|+++.|.... .+++.+.+ .....++..+.+|+
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~--G~~v~~~~r~~~~---~~~~~~~~--------------~~~~~~~~~~~~Dl 65 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARA--GAAVAIADLNQDG---ANAVADEI--------------NKAGGKAIGVAMDV 65 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC--CCeEEEEeCChHH---HHHHHHHH--------------HhcCceEEEEECCC
Confidence 46899999999999999999999998 6678888886431 11121111 11124678899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHH----HHHHHHHH-HHcCCccE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRG----TRDMLNLS-KQMIHLQL 199 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~G----T~~LLelA-~~~~~lk~ 199 (762)
++++ .++.++ ..+|+|||+|+.... .+.++..+++|+.| +.++++++ +.. +.++
T Consensus 66 ~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~~~~ 138 (262)
T PRK13394 66 TNED------AVNAGIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDD-RGGV 138 (262)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhc-CCcE
Confidence 9876 444333 358999999997542 13355678899999 67777777 443 6789
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----gl 275 (762)
||++||.++.... | ..+.|+.+|+..+.+++.++.. ++
T Consensus 139 iv~~ss~~~~~~~----------~----------------------------~~~~y~~sk~a~~~~~~~la~~~~~~~i 180 (262)
T PRK13394 139 VIYMGSVHSHEAS----------P----------------------------LKSAYVTAKHGLLGLARVLAKEGAKHNV 180 (262)
T ss_pred EEEEcchhhcCCC----------C----------------------------CCcccHHHHHHHHHHHHHHHHHhhhcCe
Confidence 9999997543211 0 0157999999999888777652 79
Q ss_pred CEEEEeeeeeccCCCCC-CCCCCCCCC-CchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 276 PCMILRPSIIIPIWKDP-LPGWTDNIN-GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP-~pGWidn~~-gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
+++++||+.++++.... .+....... .....+... +..+....++++++|++++++.++..... ...+
T Consensus 181 ~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~dva~a~~~l~~~~~~--~~~g 250 (262)
T PRK13394 181 RSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKV--------MLGKTVDGVFTTVEDVAQTVLFLSSFPSA--ALTG 250 (262)
T ss_pred EEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHH--------HhcCCCCCCCCCHHHHHHHHHHHcCcccc--CCcC
Confidence 99999999998874211 010000000 000111111 12234457899999999999999875432 1246
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
++|++.++
T Consensus 251 ~~~~~~~g 258 (262)
T PRK13394 251 QSFVVSHG 258 (262)
T ss_pred CEEeeCCc
Confidence 78998876
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.1e-17 Score=166.71 Aligned_cols=221 Identities=10% Similarity=0.018 Sum_probs=145.6
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+++||||||+||||++++++|++. +.+|+++.|.... ..+.+.+.+ . ......+.++.+|++
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~--g~~v~~~~r~~~~--~~~~~~~~~--------~-----~~~~~~~~~~~~Dl~ 67 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAA--GYRVAIHYHRSAA--EADALAAEL--------N-----ALRPGSAAALQADLL 67 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEcCCCHH--HHHHHHHHH--------H-----hhcCCceEEEEcCCC
Confidence 5689999999999999999999998 7788999886421 111111111 0 111245788999999
Q ss_pred CCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEEE
Q psy7542 140 VPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVYV 203 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~v 203 (762)
+++ ++..+++ .+|+|||+|+.... .+.++..+++|+.|+.++++++... ..-..++.+
T Consensus 68 ~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~ 141 (249)
T PRK09135 68 DPD------ALPELVAACVAAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNI 141 (249)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEE
Confidence 865 4544443 58999999996431 2345678999999999999999642 112356666
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---CCCEEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---GMPCMIL 280 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---glpv~Iv 280 (762)
|+..... +..|. +.|+.||+.+|.+++.++.. +++++++
T Consensus 142 ~~~~~~~---------~~~~~-----------------------------~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v 183 (249)
T PRK09135 142 TDIHAER---------PLKGY-----------------------------PVYCAAKAALEMLTRSLALELAPEVRVNAV 183 (249)
T ss_pred eChhhcC---------CCCCc-----------------------------hhHHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 5543211 11111 68999999999999988764 6999999
Q ss_pred eeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 281 RPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 281 RPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
||+.++|+...+ + + +.........+.. ..-+.+++|+|+++..++..... ..+++||+++
T Consensus 184 ~pg~~~~~~~~~--~----~--~~~~~~~~~~~~~---------~~~~~~~~d~a~~~~~~~~~~~~---~~g~~~~i~~ 243 (249)
T PRK09135 184 APGAILWPEDGN--S----F--DEEARQAILARTP---------LKRIGTPEDIAEAVRFLLADASF---ITGQILAVDG 243 (249)
T ss_pred EeccccCccccc--c----C--CHHHHHHHHhcCC---------cCCCcCHHHHHHHHHHHcCcccc---ccCcEEEECC
Confidence 999999886431 1 1 1111111222211 11223589999999666643221 1478999999
Q ss_pred C
Q psy7542 361 N 361 (762)
Q Consensus 361 ~ 361 (762)
+
T Consensus 244 g 244 (249)
T PRK09135 244 G 244 (249)
T ss_pred C
Confidence 8
|
|
| >KOG1431|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.5e-17 Score=160.23 Aligned_cols=276 Identities=17% Similarity=0.207 Sum_probs=193.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++|||||+||.+|++|++.+...+++-+=.++.-++ .+|+++.
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~sk-------------------------------------d~DLt~~ 44 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSK-------------------------------------DADLTNL 44 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCCCCcceEEeccc-------------------------------------cccccch
Confidence 689999999999999999998875422112222111 3566654
Q ss_pred CCCCCHHHHHhhcC--CccEEEEcccccCc----cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--c
Q psy7542 142 DLGISAEDRQMLSE--TIHIVYHIAATVRF----DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--K 213 (762)
Q Consensus 142 ~LGLs~~~l~~l~~--~vDiViH~AA~v~f----~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~ 213 (762)
. +.+.+++ +..+|||+||.+.- ....-++++.|+.-..|++..|-+. +++++|++-|...+++. .
T Consensus 45 a------~t~~lF~~ekPthVIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~-gv~K~vsclStCIfPdkt~y 117 (315)
T KOG1431|consen 45 A------DTRALFESEKPTHVIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEH-GVKKVVSCLSTCIFPDKTSY 117 (315)
T ss_pred H------HHHHHHhccCCceeeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHh-chhhhhhhcceeecCCCCCC
Confidence 3 6666665 46899999998852 1222468899999999999999997 78888877665444443 3
Q ss_pred ccccccCCC-CCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCC
Q psy7542 214 VLEEKTYPP-PVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKD 291 (762)
Q Consensus 214 ~i~E~~~~~-p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~e 291 (762)
||+|..... |..|. --+|+.+|.++.-.-+.|+.+ |...+.+-|.+|||+.+.
T Consensus 118 PIdEtmvh~gpphps-------------------------N~gYsyAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDN 172 (315)
T KOG1431|consen 118 PIDETMVHNGPPHPS-------------------------NFGYSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDN 172 (315)
T ss_pred CCCHHHhccCCCCCC-------------------------chHHHHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCC
Confidence 677764321 11111 137999999998888888887 999999999999999754
Q ss_pred CCCCCCCCCCCchHHHHHH----hcCC-eEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcc
Q psy7542 292 PLPGWTDNINGPTGLLIGA----GKGI-IRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQI 366 (762)
Q Consensus 292 P~pGWidn~~gp~~li~~~----~~G~-l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~pi 366 (762)
--| ++-....+++..+ ..|. ...++|.|...+.|+++||+|++++.++..-.. .+-.+++.+....+
T Consensus 173 fnp---e~sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFiys~DLA~l~i~vlr~Y~~-----vEpiils~ge~~EV 244 (315)
T KOG1431|consen 173 FNP---ENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFIYSDDLADLFIWVLREYEG-----VEPIILSVGESDEV 244 (315)
T ss_pred CCc---ccccchHHHHHHHHHHHhcCCceEEEecCCChHHHHhhHhHHHHHHHHHHHhhcC-----ccceEeccCcccee
Confidence 221 1112223444433 3454 567899999999999999999999999886544 45678888855689
Q ss_pred cHHHHHHHHHHhhccCCCCccccccCCccccc---------cCCCchhhHHHHHHhh
Q psy7542 367 TWYDIIENGKDIARNKVPLNNVLWYPGGAMTN---------RGYEPVLKRVHNRIKK 414 (762)
Q Consensus 367 T~~el~~~i~~~~G~~~P~~~~~w~p~~~~~~---------lG~kP~l~~l~~ki~~ 414 (762)
|++|+++++.+..|..-.+....-.+++.... ++|.|++..+.+.+.+
T Consensus 245 tI~e~aeaV~ea~~F~G~l~~DttK~DGq~kKtasnsKL~sl~pd~~ft~l~~ai~~ 301 (315)
T KOG1431|consen 245 TIREAAEAVVEAVDFTGKLVWDTTKSDGQFKKTASNSKLRSLLPDFKFTPLEQAISE 301 (315)
T ss_pred EHHHHHHHHHHHhCCCceEEeeccCCCCCcccccchHHHHHhCCCcccChHHHHHHH
Confidence 99999999999986432222222223333222 7888888888888766
|
|
| >KOG2865|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=170.22 Aligned_cols=239 Identities=14% Similarity=0.143 Sum_probs=180.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++|-.+-|.|||||+|..++.+|.+. |-+|++--|..+..- .+++- ......+-+..-|+
T Consensus 59 ~sGiVaTVFGAtGFlGryvvnklak~--GSQviiPyR~d~~~~--r~lkv----------------mGdLGQvl~~~fd~ 118 (391)
T KOG2865|consen 59 VSGIVATVFGATGFLGRYVVNKLAKM--GSQVIIPYRGDEYDP--RHLKV----------------MGDLGQVLFMKFDL 118 (391)
T ss_pred ccceEEEEecccccccHHHHHHHhhc--CCeEEEeccCCccch--hheee----------------cccccceeeeccCC
Confidence 45667888999999999999999999 567788888654321 11110 12346788888999
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEK 218 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~ 218 (762)
.|++ ++.+.++..++||++.+.---..++ .+.++|+.+.+++.+.|+++ ++.+|||+|+..++-.
T Consensus 119 ~Ded------SIr~vvk~sNVVINLIGrd~eTknf-~f~Dvn~~~aerlAricke~-GVerfIhvS~Lganv~------- 183 (391)
T KOG2865|consen 119 RDED------SIRAVVKHSNVVINLIGRDYETKNF-SFEDVNVHIAERLARICKEA-GVERFIHVSCLGANVK------- 183 (391)
T ss_pred CCHH------HHHHHHHhCcEEEEeeccccccCCc-ccccccchHHHHHHHHHHhh-Chhheeehhhcccccc-------
Confidence 8877 8999999999999999863222222 46689999999999999998 9999999999875421
Q ss_pred cCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCC
Q psy7542 219 TYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTD 298 (762)
Q Consensus 219 ~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWid 298 (762)
.|+-|-.+|+++|..++++.. ..+|+||+.|||..+.
T Consensus 184 ---------------------------------s~Sr~LrsK~~gE~aVrdafP---eAtIirPa~iyG~eDr------- 220 (391)
T KOG2865|consen 184 ---------------------------------SPSRMLRSKAAGEEAVRDAFP---EATIIRPADIYGTEDR------- 220 (391)
T ss_pred ---------------------------------ChHHHHHhhhhhHHHHHhhCC---cceeechhhhcccchh-------
Confidence 126789999999999999844 6899999999998532
Q ss_pred CCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHh
Q psy7542 299 NINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDI 378 (762)
Q Consensus 299 n~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~ 378 (762)
+-.+...+..- -|.++......+..-..|+|-|||.+|+.|+.++.. .+++|..+++ ...+..|+++++-+.
T Consensus 221 -fln~ya~~~rk-~~~~pL~~~GekT~K~PVyV~DVaa~IvnAvkDp~s----~Gktye~vGP--~~yql~eLvd~my~~ 292 (391)
T KOG2865|consen 221 -FLNYYASFWRK-FGFLPLIGKGEKTVKQPVYVVDVAAAIVNAVKDPDS----MGKTYEFVGP--DRYQLSELVDIMYDM 292 (391)
T ss_pred -HHHHHHHHHHh-cCceeeecCCcceeeccEEEehHHHHHHHhccCccc----cCceeeecCC--chhhHHHHHHHHHHH
Confidence 22222222221 344443333335667899999999999999999876 5899999999 789999999999887
Q ss_pred hccCCC
Q psy7542 379 ARNKVP 384 (762)
Q Consensus 379 ~G~~~P 384 (762)
. ++.|
T Consensus 293 ~-~~~~ 297 (391)
T KOG2865|consen 293 A-REWP 297 (391)
T ss_pred H-hhcc
Confidence 7 4433
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-16 Score=168.48 Aligned_cols=238 Identities=14% Similarity=0.073 Sum_probs=158.7
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+++||||||||+||++++++|++. +.+|+++.|+.. .+.++. .....++..+.+|++
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~--g~~V~~~~r~~~------~~~~~~--------------~~~~~~~~~~~~D~~ 59 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALER--GDRVVATARDTA------TLADLA--------------EKYGDRLLPLALDVT 59 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEECCHH------HHHHHH--------------HhccCCeeEEEccCC
Confidence 4689999999999999999999998 678899998642 122211 111246788899999
Q ss_pred CCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHH----HcCCccEEE
Q psy7542 140 VPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSK----QMIHLQLFV 201 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~----~~~~lk~fV 201 (762)
+++ ++..++ ..+|+|||+||.... .+.++..+++|+.|+..+++.+. +. +.+++|
T Consensus 60 ~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv 132 (275)
T PRK08263 60 DRA------AVFAAVETAVEHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQ-RSGHII 132 (275)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEE
Confidence 865 343332 467999999997643 14567789999999988887763 33 567999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... . .+.|+.||+..+.+++..+. .|+++
T Consensus 133 ~vsS~~~~~~~~----------~----------------------------~~~Y~~sKaa~~~~~~~la~e~~~~gi~v 174 (275)
T PRK08263 133 QISSIGGISAFP----------M----------------------------SGIYHASKWALEGMSEALAQEVAEFGIKV 174 (275)
T ss_pred EEcChhhcCCCC----------C----------------------------ccHHHHHHHHHHHHHHHHHHHhhhhCcEE
Confidence 999986543211 0 15799999999988877655 28999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCccccc-ccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADF-LPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~-VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+++|||.+..+...+.....+.......+...... ......+ +.++|+|++++.++..... ..+.+
T Consensus 175 ~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~p~dva~~~~~l~~~~~~----~~~~~ 241 (275)
T PRK08263 175 TLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAE---------QWSERSVDGDPEAAAEALLKLVDAENP----PLRLF 241 (275)
T ss_pred EEEecCCccCCccccccccCCCchhhhhHHHHHHH---------HHHhccCCCCHHHHHHHHHHHHcCCCC----CeEEE
Confidence 99999988665432111000000000011111111 1112234 8899999999999987654 24444
Q ss_pred EecCCCCCcccHHHHHHHHHHhh
Q psy7542 357 NLTANKDFQITWYDIIENGKDIA 379 (762)
Q Consensus 357 Ni~s~~~~piT~~el~~~i~~~~ 379 (762)
+...+ .++++.++.+.+.++.
T Consensus 242 ~~~~~--~~~~~~~~~~~~~~~~ 262 (275)
T PRK08263 242 LGSGV--LDLAKADYERRLATWE 262 (275)
T ss_pred eCchH--HHHHHHHHHHHHHHHH
Confidence 44443 5789999999888764
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.9e-16 Score=179.89 Aligned_cols=246 Identities=14% Similarity=0.129 Sum_probs=160.1
Q ss_pred hhccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 56 SATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 56 ~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
.+.+.|++||||||||+||++++++|++. |++|++++|.... .+++.+.+... .+.... .....+++++.
T Consensus 75 ~~~~~gKvVLVTGATGgIG~aLAr~LLk~--G~~Vval~Rn~ek---l~~l~~~l~~~---~L~~~G--a~~~~~v~iV~ 144 (576)
T PLN03209 75 LDTKDEDLAFVAGATGKVGSRTVRELLKL--GFRVRAGVRSAQR---AESLVQSVKQM---KLDVEG--TQPVEKLEIVE 144 (576)
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHC--CCeEEEEeCCHHH---HHHHHHHhhhh---cccccc--ccccCceEEEE
Confidence 34568899999999999999999999998 6788999996432 11221111000 000000 01124689999
Q ss_pred eecCCCCCCCCHHHHHhhcCCccEEEEcccccCcc-ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcc
Q psy7542 136 GDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFD-DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKV 214 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~-~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~ 214 (762)
||+.+.+ ++..++.++|+|||+||..... ..+...+++|+.|+.+++++|++. ++++||++||..+....
T Consensus 145 gDLtD~e------sI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~a-gVgRIV~VSSiga~~~g-- 215 (576)
T PLN03209 145 CDLEKPD------QIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVA-KVNHFILVTSLGTNKVG-- 215 (576)
T ss_pred ecCCCHH------HHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHh-CCCEEEEEccchhcccC--
Confidence 9999865 7888889999999999875321 234567889999999999999987 78999999998653111
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLP 294 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~p 294 (762)
..+.. .. . ...|...|..+|+.+... |+++++||||.+.++...
T Consensus 216 ~p~~~----~~--------------------s------k~~~~~~KraaE~~L~~s---GIrvTIVRPG~L~tp~d~--- 259 (576)
T PLN03209 216 FPAAI----LN--------------------L------FWGVLCWKRKAEEALIAS---GLPYTIVRPGGMERPTDA--- 259 (576)
T ss_pred ccccc----hh--------------------h------HHHHHHHHHHHHHHHHHc---CCCEEEEECCeecCCccc---
Confidence 00000 00 0 046888899999888754 999999999998765321
Q ss_pred CCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCC-cccHHHHHH
Q psy7542 295 GWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDF-QITWYDIIE 373 (762)
Q Consensus 295 GWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~-piT~~el~~ 373 (762)
+ .. .+.......+ ....-.+..+|||++++.++.+.... .+.+|.+.++... ...+.+++.
T Consensus 260 -~----~~---------t~~v~~~~~d-~~~gr~isreDVA~vVvfLasd~~as---~~kvvevi~~~~~p~~~~~~~~~ 321 (576)
T PLN03209 260 -Y----KE---------THNLTLSEED-TLFGGQVSNLQVAELMACMAKNRRLS---YCKVVEVIAETTAPLTPMEELLA 321 (576)
T ss_pred -c----cc---------ccceeecccc-ccCCCccCHHHHHHHHHHHHcCchhc---cceEEEEEeCCCCCCCCHHHHHH
Confidence 0 00 0111111111 11123578899999999998866432 4689999887321 134444444
Q ss_pred H
Q psy7542 374 N 374 (762)
Q Consensus 374 ~ 374 (762)
.
T Consensus 322 ~ 322 (576)
T PLN03209 322 K 322 (576)
T ss_pred h
Confidence 3
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-16 Score=161.77 Aligned_cols=222 Identities=14% Similarity=0.059 Sum_probs=152.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.+|+|+||||+|++|.+++++|+++ +.+|+++.|+... ..+..+++ + ....++.++.+|+
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~--g~~V~~~~r~~~~--~~~~~~~l---------~------~~~~~~~~~~~Dl 64 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAAD--GAEVIVVDICGDD--AAATAELV---------E------AAGGKARARQVDV 64 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHC--CCEEEEEeCCHHH--HHHHHHHH---------H------hcCCeEEEEECCC
Confidence 46789999999999999999999998 6789999997421 11111111 1 1124588999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH---cCCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ---MIHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~---~~~lk~fV 201 (762)
++++ ++..+++ .+|+|||+|+.... .+.+...+++|+.++.++++.+.. ..+.++||
T Consensus 65 ~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii 138 (251)
T PRK12826 65 RDRA------ALKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIV 138 (251)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9865 4555443 68999999988654 134566899999999999998852 12567899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+.... .+. ...|+.+|+.+|.+++.++.. ++++
T Consensus 139 ~~ss~~~~~~~---------~~~----------------------------~~~y~~sK~a~~~~~~~~~~~~~~~~i~~ 181 (251)
T PRK12826 139 LTSSVAGPRVG---------YPG----------------------------LAHYAASKAGLVGFTRALALELAARNITV 181 (251)
T ss_pred EEechHhhccC---------CCC----------------------------ccHHHHHHHHHHHHHHHHHHHHHHcCeEE
Confidence 99998653100 000 147999999999999887552 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
+++||+.++|+...+.. +..+......+. ....+++++|+|+++..++..... ...+++|+
T Consensus 182 ~~i~pg~~~~~~~~~~~--------~~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~--~~~g~~~~ 242 (251)
T PRK12826 182 NSVHPGGVDTPMAGNLG--------DAQWAEAIAAAI---------PLGRLGEPEDIAAAVLFLASDEAR--YITGQTLP 242 (251)
T ss_pred EEEeeCCCCcchhhhcC--------chHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccc--CcCCcEEE
Confidence 99999999887543211 111111111111 112588999999999987754432 11478999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 243 ~~~g 246 (251)
T PRK12826 243 VDGG 246 (251)
T ss_pred ECCC
Confidence 9876
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-16 Score=160.14 Aligned_cols=219 Identities=16% Similarity=0.120 Sum_probs=151.0
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+||||||||++|++|+++|++. +.+|.++.|.... ..+.+.+.. .....++.++.+|++
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~--g~~v~~~~~~~~~--~~~~~~~~~--------------~~~~~~~~~~~~D~~ 66 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARA--GADVVVHYRSDEE--AAEELVEAV--------------EALGRRAQAVQADVT 66 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCeEEEEeCCCHH--HHHHHHHHH--------------HhcCCceEEEECCcC
Confidence 5689999999999999999999998 5667777776431 112221111 112357889999999
Q ss_pred CCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHH----HcCCccEEE
Q psy7542 140 VPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSK----QMIHLQLFV 201 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~----~~~~lk~fV 201 (762)
+++ ++..++ ..+|+|||+|+.... .+.+...+++|+.|+.++++.+. +. +.++||
T Consensus 67 ~~~------~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~~i 139 (249)
T PRK12825 67 DKA------ALEAAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQ-RGGRIV 139 (249)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEE
Confidence 866 444443 468999999996533 22356688999999999998884 33 578999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... ....|+.+|+..|.++..++. .++++
T Consensus 140 ~~SS~~~~~~~~--------------------------------------~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~ 181 (249)
T PRK12825 140 NISSVAGLPGWP--------------------------------------GRSNYAAAKAGLVGLTKALARELAEYGITV 181 (249)
T ss_pred EECccccCCCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHHhhcCeEE
Confidence 999986542210 015799999999988876655 28999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
+++|||.++++...+. . +...... . . ......+++++|+++++..++..... ...+++|+
T Consensus 182 ~~i~pg~~~~~~~~~~-------~-~~~~~~~----~-~-----~~~~~~~~~~~dva~~~~~~~~~~~~--~~~g~~~~ 241 (249)
T PRK12825 182 NMVAPGDIDTDMKEAT-------I-EEAREAK----D-A-----ETPLGRSGTPEDIARAVAFLCSDASD--YITGQVIE 241 (249)
T ss_pred EEEEECCccCCccccc-------c-chhHHhh----h-c-----cCCCCCCcCHHHHHHHHHHHhCcccc--CcCCCEEE
Confidence 9999999998754321 1 1111110 0 0 01123389999999999998865432 12478999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
++++
T Consensus 242 i~~g 245 (249)
T PRK12825 242 VTGG 245 (249)
T ss_pred eCCC
Confidence 9987
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=169.84 Aligned_cols=228 Identities=12% Similarity=0.016 Sum_probs=149.0
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++++||||||||++|++++++|++. +.+|+++.|..... +.+.+... . .....+++++.+|++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~--G~~V~~~~r~~~~~---~~~~~~~~--------~----~~~~~~~~~~~~D~~ 64 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKK--GYLVIATMRNPEKQ---ENLLSQAT--------Q----LNLQQNIKVQQLDVT 64 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhC--CCEEEEEeCCHHHH---HHHHHHHH--------h----cCCCCceeEEecCCC
Confidence 5789999999999999999999998 77889998864321 11111110 0 111357899999999
Q ss_pred CCCCCCCHHHHHh------hcCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHH----HcCCccEEEE
Q psy7542 140 VPDLGISAEDRQM------LSETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSK----QMIHLQLFVY 202 (762)
Q Consensus 140 ~~~LGLs~~~l~~------l~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~----~~~~lk~fV~ 202 (762)
+++ +++. ....+|+|||+|+.... .+.+...+++|+.|+.++++.+. +. +..+||+
T Consensus 65 d~~------~~~~~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~ 137 (280)
T PRK06914 65 DQN------SIHNFQLVLKEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQ-KSGKIIN 137 (280)
T ss_pred CHH------HHHHHHHHHHhcCCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEE
Confidence 876 3322 23468999999987542 13455678899999999988863 33 5678999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~ 278 (762)
+||..+..... ..+.|+.||+..|.+++..+. .|++++
T Consensus 138 vsS~~~~~~~~--------------------------------------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~ 179 (280)
T PRK06914 138 ISSISGRVGFP--------------------------------------GLSPYVSSKYALEGFSESLRLELKPFGIDVA 179 (280)
T ss_pred ECcccccCCCC--------------------------------------CCchhHHhHHHHHHHHHHHHHHhhhhCCEEE
Confidence 99975432110 015799999999998887653 389999
Q ss_pred EEeeeeeccCCCCCCCCCCCCC---CCch-HHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNI---NGPT-GLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~---~gp~-~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
++|||.+.++...+.....+.. ..+. ..+.... +.. ......+++++|+|++++.++.+... ..
T Consensus 180 ~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~dva~~~~~~~~~~~~-----~~ 247 (280)
T PRK06914 180 LIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQ-KHI------NSGSDTFGNPIDVANLIVEIAESKRP-----KL 247 (280)
T ss_pred EEecCCcccchhhccccccccccccccchHHHHHHHH-HHH------hhhhhccCCHHHHHHHHHHHHcCCCC-----Cc
Confidence 9999998776432111000000 0010 1111111 000 01224578899999999999987654 24
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
.||++++
T Consensus 248 ~~~~~~~ 254 (280)
T PRK06914 248 RYPIGKG 254 (280)
T ss_pred ccccCCc
Confidence 6888876
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-16 Score=164.24 Aligned_cols=229 Identities=12% Similarity=0.058 Sum_probs=149.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++||||||||+||++++++|++. +.+|+++.|.... .+++.+.+ .....++..+.+|+
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~--g~~v~~~~r~~~~---~~~~~~~~--------------~~~~~~~~~~~~Dl 62 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKE--GAKVVIADLNDEA---AAAAAEAL--------------QKAGGKAIGVAMDV 62 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCHHH---HHHHHHHH--------------HhcCCcEEEEEcCC
Confidence 36789999999999999999999998 7788999986432 11221111 11235788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHH----HHcCCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLS----KQMIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA----~~~~~lk~f 200 (762)
++++ ++..+++ .+|+|||+|+..... +.+...+++|+.|+..+++.+ ++. +.++|
T Consensus 63 ~~~~------~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~i 135 (258)
T PRK12429 63 TDEE------AINAGIDYAVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQ-GGGRI 135 (258)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhc-CCeEE
Confidence 9876 4444433 689999999975432 234557889999965555554 443 57899
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... + .+.|+.+|+..+.+++.++. .++.
T Consensus 136 v~iss~~~~~~~~---------~-----------------------------~~~y~~~k~a~~~~~~~l~~~~~~~~i~ 177 (258)
T PRK12429 136 INMASVHGLVGSA---------G-----------------------------KAAYVSAKHGLIGLTKVVALEGATHGVT 177 (258)
T ss_pred EEEcchhhccCCC---------C-----------------------------cchhHHHHHHHHHHHHHHHHHhcccCeE
Confidence 9999985543211 0 15799999998888876654 2799
Q ss_pred EEEEeeeeeccCCCCCC-CCCCCCCC-CchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 277 CMILRPSIIIPIWKDPL-PGWTDNIN-GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~-pGWidn~~-gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
++++|||.+.++...+. +.-..... ......... ........++++++|+|+++..++...... ..++
T Consensus 178 v~~~~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~--~~g~ 247 (258)
T PRK12429 178 VNAICPGYVDTPLVRKQIPDLAKERGISEEEVLEDV--------LLPLVPQKRFTTVEEIADYALFLASFAAKG--VTGQ 247 (258)
T ss_pred EEEEecCCCcchhhhhhhhhhccccCCChHHHHHHH--------HhccCCccccCCHHHHHHHHHHHcCccccC--ccCC
Confidence 99999999987653210 00000000 000111111 111223457999999999999888654321 1367
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
+|++.++
T Consensus 248 ~~~~~~g 254 (258)
T PRK12429 248 AWVVDGG 254 (258)
T ss_pred eEEeCCC
Confidence 8998876
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-16 Score=162.94 Aligned_cols=229 Identities=12% Similarity=0.092 Sum_probs=149.5
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+++||||||||+||++++++|++. +.+|+++.|.... .+++.+.++ ....++.++.+|+.+
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~--g~~v~~~~r~~~~---~~~~~~~~~--------------~~~~~~~~~~~D~~~ 61 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAA--GANVVVNDLGEAG---AEAAAKVAT--------------DAGGSVIYLVADVTK 61 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHC--CCEEEEEeCCHHH---HHHHHHHHH--------------hcCCceEEEECCCCC
Confidence 478999999999999999999998 6689999996421 122222111 112478899999998
Q ss_pred CCCCCCHH----HHHhhcCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHH----HcCCccEEEEEeC
Q psy7542 141 PDLGISAE----DRQMLSETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSK----QMIHLQLFVYVST 205 (762)
Q Consensus 141 ~~LGLs~~----~l~~l~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~----~~~~lk~fV~vSS 205 (762)
++ +.+ .+.+....+|+|||+|+.... .+.++..++.|+.|+..+++.+. +. +.++||++||
T Consensus 62 ~~---~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~~~v~~ss 137 (255)
T TIGR01963 62 ED---EIADMIAAAAAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQ-GWGRIINIAS 137 (255)
T ss_pred HH---HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCeEEEEEcc
Confidence 65 010 122234568999999987542 12345678899999888888774 33 5679999999
Q ss_pred CcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEEEe
Q psy7542 206 AYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMILR 281 (762)
Q Consensus 206 ay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~IvR 281 (762)
..+..... . ...|+.+|...|.+++.++.. +++++++|
T Consensus 138 ~~~~~~~~----------~----------------------------~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~ 179 (255)
T TIGR01963 138 AHGLVASP----------F----------------------------KSAYVAAKHGLIGLTKVLALEVAAHGITVNAIC 179 (255)
T ss_pred hhhcCCCC----------C----------------------------CchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEe
Confidence 75432210 0 157999999999888766542 89999999
Q ss_pred eeeeccCCCCC-CC-CCCCCCCCc-hHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 282 PSIIIPIWKDP-LP-GWTDNINGP-TGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 282 Ps~V~G~~~eP-~p-GWidn~~gp-~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
|+.++++.... .+ .+. ....+ ...+... ...+....++++++|+|++++.++..... ...+++||+
T Consensus 180 pg~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~~~d~a~~~~~~~~~~~~--~~~g~~~~~ 248 (255)
T TIGR01963 180 PGYVRTPLVEKQIADQAK-TRGIPEEQVIREV--------MLPGQPTKRFVTVDEVAETALFLASDAAA--GITGQAIVL 248 (255)
T ss_pred cCccccHHHHHHHHhhhc-ccCCCchHHHHHH--------HHccCccccCcCHHHHHHHHHHHcCcccc--CccceEEEE
Confidence 99988764210 00 000 00000 0000000 11233456899999999999999876422 114679999
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.++
T Consensus 249 ~~g 251 (255)
T TIGR01963 249 DGG 251 (255)
T ss_pred cCc
Confidence 876
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-15 Score=159.82 Aligned_cols=240 Identities=18% Similarity=0.138 Sum_probs=160.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||+++++.|++. +.+|+++.|.... ..+..+++. . .....++.++.+|+
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~--G~~V~~~~r~~~~--~~~~~~~l~---------~----~~~~~~~~~~~~Dl 67 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAA--GAAVMIVGRNPDK--LAAAAEEIE---------A----LKGAGAVRYEPADV 67 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCeEEEEeCCHHH--HHHHHHHHH---------h----ccCCCceEEEEcCC
Confidence 57899999999999999999999998 6788999886421 111111110 0 00124788899999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
++++ ++..+++ .+|+|||+|+.... .+.+...+++|+.|+..+++.+.+. .+-.+|
T Consensus 68 ~~~~------~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~i 141 (276)
T PRK05875 68 TDED------QVARAVDAATAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSF 141 (276)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEE
Confidence 9865 4554443 68999999986421 1235567899999999999877542 133589
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
+++||..+..... ..+.|+.+|+..|.+++.++.. +++
T Consensus 142 v~~sS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~ 183 (276)
T PRK05875 142 VGISSIAASNTHR--------------------------------------WFGAYGVTKSAVDHLMKLAADELGPSWVR 183 (276)
T ss_pred EEEechhhcCCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHhcccCeE
Confidence 9999986532210 1167999999999999888753 799
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
++++|||.+.++...+. ............. .....++.++|+|+++..++..+.. ...++++
T Consensus 184 v~~i~Pg~v~t~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~--~~~g~~~ 245 (276)
T PRK05875 184 VNSIRPGLIRTDLVAPI-------TESPELSADYRAC---------TPLPRVGEVEDVANLAMFLLSDAAS--WITGQVI 245 (276)
T ss_pred EEEEecCccCCcccccc-------ccCHHHHHHHHcC---------CCCCCCcCHHHHHHHHHHHcCchhc--CcCCCEE
Confidence 99999998865532210 1111111111111 1123467799999999999876543 1136899
Q ss_pred EecCCCCCcc----cHHHHHHHHHHhh
Q psy7542 357 NLTANKDFQI----TWYDIIENGKDIA 379 (762)
Q Consensus 357 Ni~s~~~~pi----T~~el~~~i~~~~ 379 (762)
|++++ ..+ +..|+++.+....
T Consensus 246 ~~~~g--~~~~~~~~~~~~~~~~~~~~ 270 (276)
T PRK05875 246 NVDGG--HMLRRGPDFSSMLEPVFGAD 270 (276)
T ss_pred EECCC--eeccCCccHHHHHHHHhhHH
Confidence 99987 444 7777777766544
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=158.69 Aligned_cols=220 Identities=16% Similarity=0.133 Sum_probs=148.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++++++|||||||+||++++++|+++ +.+|+++.|... ++.+++. +.+ .....++.++.+|+
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~--g~~v~~~~~~~~-----~~~~~~~-----~~l------~~~~~~~~~~~~D~ 65 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQE--GAKVVINYNSSK-----EAAENLV-----NEL------GKEGHDVYAVQADV 65 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEcCCcH-----HHHHHHH-----HHH------HhcCCeEEEEECCC
Confidence 46899999999999999999999998 666666555322 1121111 111 11124688999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
+++. ++.++++ .+|+|||+|+..... +.+++.+++|+.|+..+++++... .+..+||
T Consensus 66 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv 139 (247)
T PRK12935 66 SKVE------DANRLVEEAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRII 139 (247)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9875 4444433 479999999975421 456678999999999999998742 2346899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||.++..... + ...|+.||+..|.+++..+. .++++
T Consensus 140 ~~sS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v 181 (247)
T PRK12935 140 SISSIIGQAGGF---------G-----------------------------QTNYSAAKAGMLGFTKSLALELAKTNVTV 181 (247)
T ss_pred EEcchhhcCCCC---------C-----------------------------CcchHHHHHHHHHHHHHHHHHHHHcCcEE
Confidence 999976542210 0 15799999988888766654 28999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
++++||.|.++.... .+.........+ ....++.+++|++++++.++..... ..+++||
T Consensus 182 ~~v~pg~v~t~~~~~---------~~~~~~~~~~~~---------~~~~~~~~~edva~~~~~~~~~~~~---~~g~~~~ 240 (247)
T PRK12935 182 NAICPGFIDTEMVAE---------VPEEVRQKIVAK---------IPKKRFGQADEIAKGVVYLCRDGAY---ITGQQLN 240 (247)
T ss_pred EEEEeCCCcChhhhh---------ccHHHHHHHHHh---------CCCCCCcCHHHHHHHHHHHcCcccC---ccCCEEE
Confidence 999999886542111 111222222111 1234689999999999998865321 1478999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 241 i~~g 244 (247)
T PRK12935 241 INGG 244 (247)
T ss_pred eCCC
Confidence 9876
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-16 Score=162.52 Aligned_cols=226 Identities=13% Similarity=0.091 Sum_probs=147.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++|+|||||||||++++++|++. +.+|+++.|.... ..+.+.+.++ ....++..+.+|+
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~--G~~V~~~~r~~~~--~~~~~~~~l~--------------~~~~~~~~~~~D~ 65 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGA--GAHVVVNYRQKAP--RANKVVAEIE--------------AAGGRASAVGADL 65 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHC--CCEEEEEeCCchH--hHHHHHHHHH--------------hcCCceEEEEcCC
Confidence 46789999999999999999999998 6778888886421 1122221111 1124678899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEEeCCccc
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYVSTAYCH 209 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~vSSay~~ 209 (762)
++++ ++..++ ..+|+|||+|+.... ...+...+++|+.|+.++++.+... ....++|++||..+.
T Consensus 66 ~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~ 139 (248)
T PRK07806 66 TDEE------SVAALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAH 139 (248)
T ss_pred CCHH------HHHHHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhh
Confidence 9876 444433 368999999986422 2234567889999999999999864 223589999996432
Q ss_pred CCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEeeeee
Q psy7542 210 PKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILRPSII 285 (762)
Q Consensus 210 ~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvRPs~V 285 (762)
... ..+ +.|. ...|+.||+.+|.+++.++. .++++++++|+.+
T Consensus 140 ~~~--~~~---~~~~----------------------------~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~ 186 (248)
T PRK07806 140 FIP--TVK---TMPE----------------------------YEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMI 186 (248)
T ss_pred cCc--ccc---CCcc----------------------------ccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccc
Confidence 100 000 0000 15799999999999988755 2789999988866
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 286 IPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 286 ~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
-++....+. .. ..+ +... . . .....+++.++|+|++++.++..... .+++|+++++
T Consensus 187 ~~~~~~~~~---~~-~~~-~~~~----~-~------~~~~~~~~~~~dva~~~~~l~~~~~~----~g~~~~i~~~ 242 (248)
T PRK07806 187 EGTVTATLL---NR-LNP-GAIE----A-R------REAAGKLYTVSEFAAEVARAVTAPVP----SGHIEYVGGA 242 (248)
T ss_pred cCchhhhhh---cc-CCH-HHHH----H-H------HhhhcccCCHHHHHHHHHHHhhcccc----CccEEEecCc
Confidence 443211000 00 000 0000 0 0 01123689999999999999986544 4789999987
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.6e-16 Score=163.97 Aligned_cols=227 Identities=15% Similarity=0.112 Sum_probs=152.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.+++||||||||+||.++++.|++. +.+|+++.|... +++++.+ ....++..+.+|+
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~--G~~v~~~~r~~~------~~~~~~~--------------~~~~~~~~~~~D~ 61 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAE--GARVVIADIKPA------RARLAAL--------------EIGPAAIAVSLDV 61 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEcCCHH------HHHHHHH--------------HhCCceEEEEccC
Confidence 46789999999999999999999998 678899888542 2222211 1124688899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc----CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM----IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~----~~lk~f 200 (762)
++++ +++.++ ..+|+|||+|+.... .+.++..+++|+.|+..+++++... ..-.+|
T Consensus 62 ~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i 135 (257)
T PRK07067 62 TRQD------SIDRIVAAAVERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKI 135 (257)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEE
Confidence 9876 444443 368999999997542 1346678999999999999998642 112479
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... + -..|+.||+..+.+++..+. .|++
T Consensus 136 v~~sS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 177 (257)
T PRK07067 136 INMASQAGRRGEA---------L-----------------------------VSHYCATKAAVISYTQSAALALIRHGIN 177 (257)
T ss_pred EEeCCHHhCCCCC---------C-----------------------------CchhhhhHHHHHHHHHHHHHHhcccCeE
Confidence 9999974322110 1 15799999999999887765 3899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCC-chHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNING-PTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~g-p~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
++++|||.|.++..+..-........ ..+... ...+.......+++++|+|++++.++..... ...+.+
T Consensus 178 v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~--~~~g~~ 247 (257)
T PRK07067 178 VNAIAPGVVDTPMWDQVDALFARYENRPPGEKK--------RLVGEAVPLGRMGVPDDLTGMALFLASADAD--YIVAQT 247 (257)
T ss_pred EEEEeeCcccchhhhhhhhhhhhccCCCHHHHH--------HHHhhcCCCCCccCHHHHHHHHHHHhCcccc--cccCcE
Confidence 99999999988642211000000000 000000 0112223346789999999999998876432 124789
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
|++.++
T Consensus 248 ~~v~gg 253 (257)
T PRK07067 248 YNVDGG 253 (257)
T ss_pred EeecCC
Confidence 999887
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.8e-16 Score=160.48 Aligned_cols=222 Identities=15% Similarity=0.120 Sum_probs=146.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEE-eCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYIL-LRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~L-vR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++++|+||||||+||+++++.|++. +.+|.++ .|.. +++++..+ .+ .....++.++.+|
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~--G~~v~i~~~r~~------~~~~~~~~-----~~------~~~~~~~~~~~~D 64 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLAND--GALVAIHYGRNK------QAADETIR-----EI------ESNGGKAFLIEAD 64 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEcCCCH------HHHHHHHH-----HH------HhcCCcEEEEEcC
Confidence 46789999999999999999999998 5666664 4532 12222111 11 1112468899999
Q ss_pred cCCCCCCCCHHHHHhhcC-------------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-CC
Q psy7542 138 VAVPDLGISAEDRQMLSE-------------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-IH 196 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~-------------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~~ 196 (762)
+++++ ++.++++ ++|+|||+||.... .+.+...+++|+.|+.++++.+... .+
T Consensus 65 ~~d~~------~i~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ 138 (254)
T PRK12746 65 LNSID------GVKKLVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRA 138 (254)
T ss_pred cCCHH------HHHHHHHHHHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 99876 4444333 58999999997532 1224567889999999999998763 23
Q ss_pred ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----
Q psy7542 197 LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME---- 272 (762)
Q Consensus 197 lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~---- 272 (762)
..+||++||..+..... ..+.|+.||+..|.+++..+.
T Consensus 139 ~~~~v~~sS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~~~~~~~~ 180 (254)
T PRK12746 139 EGRVINISSAEVRLGFT--------------------------------------GSIAYGLSKGALNTMTLPLAKHLGE 180 (254)
T ss_pred CCEEEEECCHHhcCCCC--------------------------------------CCcchHhhHHHHHHHHHHHHHHHhh
Confidence 35899999986543210 015799999999998877655
Q ss_pred cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCC
Q psy7542 273 AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNT 352 (762)
Q Consensus 273 ~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~ 352 (762)
.++++++++||.+.++..... .....+.....+. .....+++++|+|+++..++..... ...
T Consensus 181 ~~i~v~~v~pg~~~t~~~~~~--------~~~~~~~~~~~~~--------~~~~~~~~~~dva~~~~~l~~~~~~--~~~ 242 (254)
T PRK12746 181 RGITVNTIMPGYTKTDINAKL--------LDDPEIRNFATNS--------SVFGRIGQVEDIADAVAFLASSDSR--WVT 242 (254)
T ss_pred cCcEEEEEEECCccCcchhhh--------ccChhHHHHHHhc--------CCcCCCCCHHHHHHHHHHHcCcccC--CcC
Confidence 279999999999877643211 0001111111111 1123577899999999887765432 114
Q ss_pred ceEEEecCC
Q psy7542 353 MRVINLTAN 361 (762)
Q Consensus 353 ~~iyNi~s~ 361 (762)
+++|++.++
T Consensus 243 g~~~~i~~~ 251 (254)
T PRK12746 243 GQIIDVSGG 251 (254)
T ss_pred CCEEEeCCC
Confidence 679999865
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-15 Score=156.30 Aligned_cols=218 Identities=19% Similarity=0.156 Sum_probs=149.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|+||||||+||++++++|++. +.+|+++.|.... .+++.+.+ + ....++..+.+|+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~--g~~vi~~~r~~~~---~~~~~~~~--------~------~~~~~~~~~~~Dl 64 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALARE--GASVVVADINAEG---AERVAKQI--------V------ADGGTAIAVQVDV 64 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHH---HHHHHHHH--------H------hcCCcEEEEEcCC
Confidence 46899999999999999999999998 6788999986421 12222111 1 1123577889999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc----------cccHHHHHHHhHHHHHHHHHHHHHc---CCcc
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF----------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQ 198 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f----------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk 198 (762)
+++. +++.++ ..+|+|||+|+.... .+.++..+++|+.|+.++++++... .+.+
T Consensus 65 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ 138 (250)
T PRK07774 65 SDPD------SAKAMADATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGG 138 (250)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc
Confidence 9865 443333 368999999997421 1335567899999999999998753 1346
Q ss_pred EEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----C
Q psy7542 199 LFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----G 274 (762)
Q Consensus 199 ~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----g 274 (762)
+||++||..+... .+.|+.||+..|.+++..++. +
T Consensus 139 ~iv~~sS~~~~~~-----------------------------------------~~~Y~~sK~a~~~~~~~l~~~~~~~~ 177 (250)
T PRK07774 139 AIVNQSSTAAWLY-----------------------------------------SNFYGLAKVGLNGLTQQLARELGGMN 177 (250)
T ss_pred EEEEEecccccCC-----------------------------------------ccccHHHHHHHHHHHHHHHHHhCccC
Confidence 8999999865321 157999999999999887663 7
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
+++++++||.+..+.... ..+..+......+... .-+..++|+|++++.++..... ...++
T Consensus 178 i~v~~v~pg~~~t~~~~~--------~~~~~~~~~~~~~~~~---------~~~~~~~d~a~~~~~~~~~~~~--~~~g~ 238 (250)
T PRK07774 178 IRVNAIAPGPIDTEATRT--------VTPKEFVADMVKGIPL---------SRMGTPEDLVGMCLFLLSDEAS--WITGQ 238 (250)
T ss_pred eEEEEEecCcccCccccc--------cCCHHHHHHHHhcCCC---------CCCcCHHHHHHHHHHHhChhhh--CcCCC
Confidence 999999999876554221 1122233233332211 1245689999999988775421 11468
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
+||+.++
T Consensus 239 ~~~v~~g 245 (250)
T PRK07774 239 IFNVDGG 245 (250)
T ss_pred EEEECCC
Confidence 9999987
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-15 Score=155.83 Aligned_cols=220 Identities=16% Similarity=0.126 Sum_probs=148.5
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
.|+||||||||+||++++++|++. +.+|+++.|..... . +.+.+. + .....++.++.+|+++
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~--g~~vi~~~r~~~~~-~-~~~~~~--------~------~~~~~~~~~~~~D~~~ 63 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAA--GFDLAINDRPDDEE-L-AATQQE--------L------RALGVEVIFFPADVAD 63 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC--CCEEEEEecCchhH-H-HHHHHH--------H------HhcCCceEEEEecCCC
Confidence 368999999999999999999998 67888888864321 1 111111 1 1112578999999998
Q ss_pred CCCCCCHHHHHhhc-------CCccEEEEcccccCc---------cccHHHHHHHhHHHHHHHHHHHHHc----CC----
Q psy7542 141 PDLGISAEDRQMLS-------ETIHIVYHIAATVRF---------DDYMQTYVFLNTRGTRDMLNLSKQM----IH---- 196 (762)
Q Consensus 141 ~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f---------~~~l~~~~~~NV~GT~~LLelA~~~----~~---- 196 (762)
++ ++.+++ ..+|+|||+|+.... .+.++..+++|+.|+.++++.+... ++
T Consensus 64 ~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~ 137 (256)
T PRK12745 64 LS------AHEAMLDAAQAAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEEL 137 (256)
T ss_pred HH------HHHHHHHHHHHhcCCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCC
Confidence 76 443333 468999999987432 1445678999999999998887542 11
Q ss_pred -ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH---
Q psy7542 197 -LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME--- 272 (762)
Q Consensus 197 -lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~--- 272 (762)
..+||++||..+..... ..+.|+.+|+..|.+++.++.
T Consensus 138 ~~~~iv~~sS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~l~~~~~ 179 (256)
T PRK12745 138 PHRSIVFVSSVNAIMVSP--------------------------------------NRGEYCISKAGLSMAAQLFAARLA 179 (256)
T ss_pred CCcEEEEECChhhccCCC--------------------------------------CCcccHHHHHHHHHHHHHHHHHHH
Confidence 56799999975532211 015799999999999988874
Q ss_pred -cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCC
Q psy7542 273 -AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGN 351 (762)
Q Consensus 273 -~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~ 351 (762)
.|++++++|||.+.++...+. . .........+. ....++.+++|+++++..++..... ..
T Consensus 180 ~~gi~v~~i~pg~v~t~~~~~~---~------~~~~~~~~~~~--------~~~~~~~~~~d~a~~i~~l~~~~~~--~~ 240 (256)
T PRK12745 180 EEGIGVYEVRPGLIKTDMTAPV---T------AKYDALIAKGL--------VPMPRWGEPEDVARAVAALASGDLP--YS 240 (256)
T ss_pred HhCCEEEEEecCCCcCcccccc---c------hhHHhhhhhcC--------CCcCCCcCHHHHHHHHHHHhCCccc--cc
Confidence 289999999998877643211 0 01111111111 1123577999999999888754422 12
Q ss_pred CceEEEecCC
Q psy7542 352 TMRVINLTAN 361 (762)
Q Consensus 352 ~~~iyNi~s~ 361 (762)
.+.+|++.++
T Consensus 241 ~G~~~~i~gg 250 (256)
T PRK12745 241 TGQAIHVDGG 250 (256)
T ss_pred CCCEEEECCC
Confidence 4789999876
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=158.26 Aligned_cols=222 Identities=11% Similarity=0.056 Sum_probs=147.2
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++++||||||+||||++++++|++. +.+|++..|+.. +++.+.. ..+ .....++..+.+|++
T Consensus 5 ~~~~vlitGasg~iG~~l~~~l~~~--g~~v~~~~~~~~-----~~~~~~~-----~~~------~~~~~~~~~~~~D~~ 66 (252)
T PRK06077 5 KDKVVVVTGSGRGIGRAIAVRLAKE--GSLVVVNAKKRA-----EEMNETL-----KMV------KENGGEGIGVLADVS 66 (252)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCCh-----HHHHHHH-----HHH------HHcCCeeEEEEeccC
Confidence 5789999999999999999999988 667777776532 1121111 001 111245778899999
Q ss_pred CCCCCCCHHHHHhh-------cCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEEe
Q psy7542 140 VPDLGISAEDRQML-------SETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYVS 204 (762)
Q Consensus 140 ~~~LGLs~~~l~~l-------~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~vS 204 (762)
+++ ++..+ ...+|+|||+||.... .+.++..+++|+.|+..+++++.+. ..-.+||++|
T Consensus 67 ~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 140 (252)
T PRK06077 67 TRE------GCETLAKATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIA 140 (252)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEc
Confidence 876 33333 3468999999996332 1224567899999999999988753 2235899999
Q ss_pred CCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---CCCEEEEe
Q psy7542 205 TAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---GMPCMILR 281 (762)
Q Consensus 205 Say~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---glpv~IvR 281 (762)
|..+..... + -+.|+.||+..|.+++.++.. ++.+.+++
T Consensus 141 S~~~~~~~~---------~-----------------------------~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~ 182 (252)
T PRK06077 141 SVAGIRPAY---------G-----------------------------LSIYGAMKAAVINLTKYLALELAPKIRVNAIA 182 (252)
T ss_pred chhccCCCC---------C-----------------------------chHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 986542110 1 157999999999999887764 68899999
Q ss_pred eeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 282 PSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 282 Ps~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
||.|.++.......+. .... ..... +......+++++|+|++++.++..... .+++||+.++
T Consensus 183 Pg~i~t~~~~~~~~~~---~~~~---~~~~~--------~~~~~~~~~~~~dva~~~~~~~~~~~~----~g~~~~i~~g 244 (252)
T PRK06077 183 PGFVKTKLGESLFKVL---GMSE---KEFAE--------KFTLMGKILDPEEVAEFVAAILKIESI----TGQVFVLDSG 244 (252)
T ss_pred eCCccChHHHhhhhcc---cccH---HHHHH--------hcCcCCCCCCHHHHHHHHHHHhCcccc----CCCeEEecCC
Confidence 9988665322110000 0000 00000 011123689999999999999875443 4789999987
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-15 Score=159.57 Aligned_cols=237 Identities=15% Similarity=0.070 Sum_probs=152.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+|+||||+|+||++++++|++. +.+|++..|+.. +++++. +.++ ....++.++.+|+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~--G~~Vv~~~r~~~------~l~~~~-----~~l~------~~~~~~~~~~~Dv 64 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARR--GARVVLGDVDKP------GLRQAV-----NHLR------AEGFDVHGVMCDV 64 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHH-----HHHH------hcCCeEEEEeCCC
Confidence 57899999999999999999999998 677888887642 222211 1111 1124678899999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH----cCCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ----MIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~----~~~lk~f 200 (762)
++++ ++.++++ .+|+|||+||.... .+.++..+++|+.|+.++++++.. .+...++
T Consensus 65 ~d~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~i 138 (275)
T PRK05876 65 RHRE------EVTHLADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHV 138 (275)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEE
Confidence 9876 4544433 57999999997431 134566789999999999988753 2114689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHH----HHHHHHHHHHcCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCL----CEGVVTEYMEAGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~----aE~lv~~~~~~glp 276 (762)
|++||..+..... ....|+.||+. +|.+..++...|++
T Consensus 139 v~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~l~~e~~~~gi~ 180 (275)
T PRK05876 139 VFTASFAGLVPNA--------------------------------------GLGAYGVAKYGVVGLAETLAREVTADGIG 180 (275)
T ss_pred EEeCChhhccCCC--------------------------------------CCchHHHHHHHHHHHHHHHHHHhhhcCcE
Confidence 9999986543211 11579999996 66666665445999
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+++++||.|.++..... ..... ............+......++++++|+|++++.++... +.|
T Consensus 181 v~~v~Pg~v~t~~~~~~-------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ai~~~--------~~~ 243 (275)
T PRK05876 181 VSVLCPMVVETNLVANS-------ERIRG--AACAQSSTTGSPGPLPLQDDNLGVDDIAQLTADAILAN--------RLY 243 (275)
T ss_pred EEEEEeCccccccccch-------hhhcC--ccccccccccccccccccccCCCHHHHHHHHHHHHHcC--------CeE
Confidence 99999998866532110 00000 00000001112233344567899999999999998643 344
Q ss_pred EecCCCCCcccHHHHHHHHHHhh
Q psy7542 357 NLTANKDFQITWYDIIENGKDIA 379 (762)
Q Consensus 357 Ni~s~~~~piT~~el~~~i~~~~ 379 (762)
.+.+ +..+.++.+...++.
T Consensus 244 ~~~~----~~~~~~~~~~~~~~~ 262 (275)
T PRK05876 244 VLPH----AASRASIRRRFERID 262 (275)
T ss_pred EecC----hhhHHHHHHHHHHHH
Confidence 4442 345555555555544
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-15 Score=157.75 Aligned_cols=214 Identities=13% Similarity=0.052 Sum_probs=142.0
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+++||||||+|+||++++++|++. +.+|+++.|... +++++. .....++..+.+|++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~--G~~V~~~~r~~~------~~~~l~--------------~~~~~~~~~~~~D~~ 60 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAA--GHRVVGTVRSEA------ARADFE--------------ALHPDRALARLLDVT 60 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhC--cCEEEEEeCCHH------HHHHHH--------------hhcCCCeeEEEccCC
Confidence 5689999999999999999999998 778999999642 222211 111246888999999
Q ss_pred CCCCCCCHHHHHhhcC-------CccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHH---cCCccEEEE
Q psy7542 140 VPDLGISAEDRQMLSE-------TIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQ---MIHLQLFVY 202 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~---~~~lk~fV~ 202 (762)
+++ ++..+++ .+|+|||+|+..... +.++..+++|+.|+.++++++.. ..+..++|+
T Consensus 61 d~~------~~~~~~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~ 134 (277)
T PRK06180 61 DFD------AIDAVVADAEATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVN 134 (277)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEE
Confidence 876 4444433 589999999975431 23566799999999999998643 124568999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~ 278 (762)
+||..+..... + ...|+.+|+..|.+++..+.. |++++
T Consensus 135 iSS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 176 (277)
T PRK06180 135 ITSMGGLITMP---------G-----------------------------IGYYCGSKFALEGISESLAKEVAPFGIHVT 176 (277)
T ss_pred EecccccCCCC---------C-----------------------------cchhHHHHHHHHHHHHHHHHHhhhhCcEEE
Confidence 99975432110 0 157999999999988877642 89999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCch---HHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPT---GLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~---~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
++|||.|.++...+ ++........ ..+........ . .....+..++|+|++++.++.....
T Consensus 177 ~i~Pg~v~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~dva~~~~~~l~~~~~ 240 (277)
T PRK06180 177 AVEPGSFRTDWAGR--SMVRTPRSIADYDALFGPIRQARE-A-----KSGKQPGDPAKAAQAILAAVESDEP 240 (277)
T ss_pred EEecCCcccCcccc--ccccCCCCcHhHHHHHHHHHHHHH-h-----hccCCCCCHHHHHHHHHHHHcCCCC
Confidence 99999987764321 1111101111 11111100000 0 0112356799999999999876544
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-15 Score=158.98 Aligned_cols=224 Identities=14% Similarity=0.088 Sum_probs=150.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|++..|....... +.+.+.+ .....++.++.+|+
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~--G~~V~i~~~~~~~~~~-~~~~~~~--------------~~~~~~~~~~~~Dl 115 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFARE--GADIALNYLPEEEQDA-AEVVQLI--------------QAEGRKAVALPGDL 115 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHc--CCEEEEEeCCcchHHH-HHHHHHH--------------HHcCCeEEEEecCC
Confidence 57899999999999999999999998 6667766665432111 1121111 11234678899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccC----c----cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVR----F----DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~----f----~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~ 202 (762)
++++ +++.++ .++|+|||+|+... + .+.+...+++|+.|+..+++++... ..-.++|+
T Consensus 116 ~~~~------~v~~~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~ 189 (300)
T PRK06128 116 KDEA------FCRQLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIIN 189 (300)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEE
Confidence 9865 444333 46899999999642 1 2456778999999999999999753 22258999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~ 278 (762)
+||..+..... . ...|+.||+..+.+++..+. .|++++
T Consensus 190 ~sS~~~~~~~~----------~----------------------------~~~Y~asK~a~~~~~~~la~el~~~gI~v~ 231 (300)
T PRK06128 190 TGSIQSYQPSP----------T----------------------------LLDYASTKAAIVAFTKALAKQVAEKGIRVN 231 (300)
T ss_pred ECCccccCCCC----------C----------------------------chhHHHHHHHHHHHHHHHHHHhhhcCcEEE
Confidence 99986543211 0 14699999999999988765 289999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
+++||.|.++..... ......+..+..+ .....+...+|+|++++.++..... -..++++++
T Consensus 232 ~v~PG~i~t~~~~~~-------~~~~~~~~~~~~~---------~p~~r~~~p~dva~~~~~l~s~~~~--~~~G~~~~v 293 (300)
T PRK06128 232 AVAPGPVWTPLQPSG-------GQPPEKIPDFGSE---------TPMKRPGQPVEMAPLYVLLASQESS--YVTGEVFGV 293 (300)
T ss_pred EEEECcCcCCCcccC-------CCCHHHHHHHhcC---------CCCCCCcCHHHHHHHHHHHhCcccc--CccCcEEee
Confidence 999999987743210 0011112211111 1123466889999999888765332 114689999
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.++
T Consensus 294 ~gg 296 (300)
T PRK06128 294 TGG 296 (300)
T ss_pred CCC
Confidence 887
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-15 Score=157.46 Aligned_cols=222 Identities=15% Similarity=0.167 Sum_probs=147.2
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+|+||||||+|+||++++++|++. +.+|+++.|+.. ++++.. +.+ .....++.++.+|++
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~--G~~V~~~~r~~~------~~~~~~-----~~~------~~~~~~~~~~~~Dl~ 69 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAA--GFPVALGARRVE------KCEELV-----DKI------RADGGEAVAFPLDVT 69 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHH-----HHH------HhcCCeEEEEECCCC
Confidence 5689999999999999999999998 678888888532 222211 111 111246888899999
Q ss_pred CCCCCCCHHHHHhhc-------CCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEE
Q psy7542 140 VPDLGISAEDRQMLS-------ETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVY 202 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~ 202 (762)
+++ ++.+++ ..+|+|||+|+..... +.+...+++|+.|+.++++.+... .+..+||+
T Consensus 70 ~~~------~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~ 143 (274)
T PRK07775 70 DPD------SVKSFVAQAEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIF 143 (274)
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 876 454433 3679999999975421 234567899999999999887531 24468999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~ 278 (762)
+||..+..... ....|+.+|+..|.+++.++.. |++++
T Consensus 144 isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~ 185 (274)
T PRK07775 144 VGSDVALRQRP--------------------------------------HMGAYGAAKAGLEAMVTNLQMELEGTGVRAS 185 (274)
T ss_pred ECChHhcCCCC--------------------------------------CcchHHHHHHHHHHHHHHHHHHhcccCeEEE
Confidence 99985543211 0147999999999999888752 89999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
++|||.+.++..... .......++..... .+ ......++++||+|++++.++..+. .+.+||+
T Consensus 186 ~v~pG~~~t~~~~~~-----~~~~~~~~~~~~~~------~~-~~~~~~~~~~~dva~a~~~~~~~~~-----~~~~~~~ 248 (274)
T PRK07775 186 IVHPGPTLTGMGWSL-----PAEVIGPMLEDWAK------WG-QARHDYFLRASDLARAITFVAETPR-----GAHVVNM 248 (274)
T ss_pred EEeCCcccCcccccC-----ChhhhhHHHHHHHH------hc-ccccccccCHHHHHHHHHHHhcCCC-----CCCeeEE
Confidence 999987754421100 00000111111111 00 1223568999999999999987643 2568888
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.-.
T Consensus 249 ~~~ 251 (274)
T PRK07775 249 EVQ 251 (274)
T ss_pred eec
Confidence 643
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.1e-15 Score=155.11 Aligned_cols=232 Identities=12% Similarity=0.080 Sum_probs=157.8
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
++++|||||||+||+.+++.|++. +.+|+++.|... +++++.+ .....++.++.+|+.+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~--g~~v~~~~r~~~------~~~~~~~-------------~~~~~~~~~~~~D~~~ 60 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAA--GDRVLALDIDAA------ALAAFAD-------------ALGDARFVPVACDLTD 60 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH-------------HhcCCceEEEEecCCC
Confidence 578999999999999999999988 678899998642 2222111 0012468899999998
Q ss_pred CCCCCCHHHHHhhcC-------CccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEE
Q psy7542 141 PDLGISAEDRQMLSE-------TIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYV 203 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~v 203 (762)
++ ++..+++ ++|+|||+|+..... +.+...+.+|+.|+.++++.+... .+..+||++
T Consensus 61 ~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ 134 (257)
T PRK07074 61 AA------SLAAALANAAAERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNI 134 (257)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 76 4544433 589999999875321 234456789999999999888431 245689999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~I 279 (762)
||..+.... . + ..|+.+|+..|.+++.++.. |+++++
T Consensus 135 sS~~~~~~~--------~------------------------------~-~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~ 175 (257)
T PRK07074 135 GSVNGMAAL--------G------------------------------H-PAYSAAKAGLIHYTKLLAVEYGRFGIRANA 175 (257)
T ss_pred cchhhcCCC--------C------------------------------C-cccHHHHHHHHHHHHHHHHHHhHhCeEEEE
Confidence 997543110 0 0 36999999999998887753 799999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
+|||.+.++.... .......+...... .....++++++|++++++.++..... ...+.++++.
T Consensus 176 v~pg~v~t~~~~~------~~~~~~~~~~~~~~---------~~~~~~~~~~~d~a~~~~~l~~~~~~--~~~g~~~~~~ 238 (257)
T PRK07074 176 VAPGTVKTQAWEA------RVAANPQVFEELKK---------WYPLQDFATPDDVANAVLFLASPAAR--AITGVCLPVD 238 (257)
T ss_pred EEeCcCCcchhhc------ccccChHHHHHHHh---------cCCCCCCCCHHHHHHHHHHHcCchhc--CcCCcEEEeC
Confidence 9999887653210 00001112111111 12235899999999999999864322 1146788888
Q ss_pred CCCCCcccHHHHHHHHHH
Q psy7542 360 ANKDFQITWYDIIENGKD 377 (762)
Q Consensus 360 s~~~~piT~~el~~~i~~ 377 (762)
++ ......|+++.+.+
T Consensus 239 ~g--~~~~~~~~~~~~~~ 254 (257)
T PRK07074 239 GG--LTAGNREMARTLTL 254 (257)
T ss_pred CC--cCcCChhhhhhhcc
Confidence 88 67788888887654
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-15 Score=153.19 Aligned_cols=226 Identities=15% Similarity=0.115 Sum_probs=150.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++||||||||+||++++++|++. +.+|+++.|.... .+++.+.+ + ....++.++.+|+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~--g~~v~~~~r~~~~---~~~~~~~~--------~------~~~~~~~~~~~d~ 61 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEE--GAKVAVFDLNREA---AEKVAADI--------R------AKGGNAQAFACDI 61 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEecCCHHH---HHHHHHHH--------H------hcCCcEEEEEcCC
Confidence 36899999999999999999999998 6788888886421 12222111 1 1135688999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++.++ ..+|+|||+|+.... .+.++..+++|+.|+.++++.+... .+.+++|
T Consensus 62 ~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii 135 (250)
T TIGR03206 62 TDRD------SVDTAVAAAEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIV 135 (250)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEE
Confidence 9865 444443 368999999986431 1234567999999999998887531 2457899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+..... ....|+.+|+..+.+++.++.. ++++
T Consensus 136 ~iss~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v 177 (250)
T TIGR03206 136 NIASDAARVGSS--------------------------------------GEAVYAACKGGLVAFSKTMAREHARHGITV 177 (250)
T ss_pred EECchhhccCCC--------------------------------------CCchHHHHHHHHHHHHHHHHHHHhHhCcEE
Confidence 999986543211 0157999999888888776653 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
+++|||.++++......++ ...+..+...+..... ...+...+|+|++++.++..... ...+++++
T Consensus 178 ~~v~pg~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---------~~~~~~~~dva~~~~~l~~~~~~--~~~g~~~~ 243 (250)
T TIGR03206 178 NVVCPGPTDTALLDDICGG---AENPEKLREAFTRAIP---------LGRLGQPDDLPGAILFFSSDDAS--FITGQVLS 243 (250)
T ss_pred EEEecCcccchhHHhhhhc---cCChHHHHHHHHhcCC---------ccCCcCHHHHHHHHHHHcCcccC--CCcCcEEE
Confidence 9999999887643221111 1122222222222111 11245678999999998775432 12468898
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 244 ~~~g 247 (250)
T TIGR03206 244 VSGG 247 (250)
T ss_pred eCCC
Confidence 8765
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.4e-15 Score=152.16 Aligned_cols=219 Identities=17% Similarity=0.125 Sum_probs=148.5
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+++|+||||+|++|++|++.|++. +.+|+++.|+.... +.+.+. + .....++.++.+|++
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~--g~~v~~~~r~~~~~---~~~~~~--------~------~~~~~~~~~~~~D~~ 64 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAAD--GAKVVIYDSNEEAA---EALAAE--------L------RAAGGEARVLVFDVS 64 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCChhHH---HHHHHH--------H------HhcCCceEEEEccCC
Confidence 5689999999999999999999998 66789998874321 111111 1 112357889999999
Q ss_pred CCCCCCCHHHHHhhc-------CCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEE
Q psy7542 140 VPDLGISAEDRQMLS-------ETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVY 202 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~ 202 (762)
+++ ++..++ ..+|+|||+||..... +.+...++.|+.++.++++.+... .+.++||+
T Consensus 65 ~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~ 138 (246)
T PRK05653 65 DEA------AVRALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVN 138 (246)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 875 343333 3579999999876432 235667899999999999888531 25679999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~ 278 (762)
+||..+..... ....|+.+|...|.+++..++. +++++
T Consensus 139 ~ss~~~~~~~~--------------------------------------~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~ 180 (246)
T PRK05653 139 ISSVSGVTGNP--------------------------------------GQTNYSAAKAGVIGFTKALALELASRGITVN 180 (246)
T ss_pred ECcHHhccCCC--------------------------------------CCcHhHhHHHHHHHHHHHHHHHHhhcCeEEE
Confidence 99975422110 0157999999988888776542 89999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
++||+.+.++...++ ........... .....++.++|+++++..++..... ...+++|++
T Consensus 181 ~i~pg~~~~~~~~~~---------~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~~~~~~~~--~~~g~~~~~ 240 (246)
T PRK05653 181 AVAPGFIDTDMTEGL---------PEEVKAEILKE---------IPLGRLGQPEEVANAVAFLASDAAS--YITGQVIPV 240 (246)
T ss_pred EEEeCCcCCcchhhh---------hHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCchhc--CccCCEEEe
Confidence 999999987643210 11111111111 1124578889999999998864322 124689999
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
+++
T Consensus 241 ~gg 243 (246)
T PRK05653 241 NGG 243 (246)
T ss_pred CCC
Confidence 876
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-15 Score=155.99 Aligned_cols=227 Identities=13% Similarity=0.089 Sum_probs=148.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++||||||+|+||++++++|++. +.+|+++.|.... .+.+.+.. + ..++.++.+|+
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~--g~~V~~~~r~~~~---~~~~~~~~--------------~--~~~~~~~~~D~ 67 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEA--GARVHVCDVSEAA---LAATAARL--------------P--GAKVTATVADV 67 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHC--CCEEEEEeCCHHH---HHHHHHHH--------------h--cCceEEEEccC
Confidence 57899999999999999999999998 6788999986421 11111110 1 12678899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc---CCc-cE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM---IHL-QL 199 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~---~~l-k~ 199 (762)
++++ ++..++ .++|+|||+|+.... .+.+...+++|+.|+.++++.+... .+. +.
T Consensus 68 ~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 141 (264)
T PRK12829 68 ADPA------QVERVFDTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGV 141 (264)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeE
Confidence 9876 344333 478999999997621 1345678999999999999887431 233 56
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----gl 275 (762)
|+++||..+.... |. ...|+.+|+..|.++...+.. ++
T Consensus 142 vv~~ss~~~~~~~----------~~----------------------------~~~y~~~K~a~~~~~~~l~~~~~~~~i 183 (264)
T PRK12829 142 IIALSSVAGRLGY----------PG----------------------------RTPYAASKWAVVGLVKSLAIELGPLGI 183 (264)
T ss_pred EEEecccccccCC----------CC----------------------------CchhHHHHHHHHHHHHHHHHHHhhcCe
Confidence 8888876442111 00 146999999999998887652 89
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCC--CchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNIN--GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~--gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
+++++|||.++++............. +.......... ......+++++|+|+++..++..... ...+
T Consensus 184 ~~~~l~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~d~a~~~~~l~~~~~~--~~~g 252 (264)
T PRK12829 184 RVNAILPGIVRGPRMRRVIEARAQQLGIGLDEMEQEYLE---------KISLGRMVEPEDIAATALFLASPAAR--YITG 252 (264)
T ss_pred EEEEEecCCcCChHHHHHhhhhhhccCCChhHHHHHHHh---------cCCCCCCCCHHHHHHHHHHHcCcccc--CccC
Confidence 99999999998875432110000000 00011111100 01123589999999999888754321 1247
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+.|+++++
T Consensus 253 ~~~~i~~g 260 (264)
T PRK12829 253 QAISVDGN 260 (264)
T ss_pred cEEEeCCC
Confidence 79999887
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-15 Score=153.97 Aligned_cols=222 Identities=15% Similarity=0.109 Sum_probs=151.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||+.++++|++. +.+|+++.|... +++++. +.++ ....++..+.+|+
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~--G~~V~~~~r~~~------~~~~~~-----~~i~------~~~~~~~~~~~D~ 68 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQA--GAEVILNGRDPA------KLAAAA-----ESLK------GQGLSAHALAFDV 68 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHc--CCEEEEEeCCHH------HHHHHH-----HHHH------hcCceEEEEEccC
Confidence 47899999999999999999999998 678898888632 222211 1111 1124588899999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++.+. .+..++|
T Consensus 69 ~~~~------~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv 142 (255)
T PRK07523 69 TDHD------AVRAAIDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKII 142 (255)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEE
Confidence 9866 4555443 58999999997532 2335668889999999999988753 2457899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+.... | ....|+.+|...|.+++.++. .|+++
T Consensus 143 ~iss~~~~~~~----------~----------------------------~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v 184 (255)
T PRK07523 143 NIASVQSALAR----------P----------------------------GIAPYTATKGAVGNLTKGMATDWAKHGLQC 184 (255)
T ss_pred EEccchhccCC----------C----------------------------CCccHHHHHHHHHHHHHHHHHHhhHhCeEE
Confidence 99997542211 0 015799999999999888765 28999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
+++|||.+.++..... .....+...+... .....+..++|+|++++.++..... .-.+++++
T Consensus 185 ~~i~pg~~~t~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~i~ 246 (255)
T PRK07523 185 NAIAPGYFDTPLNAAL-------VADPEFSAWLEKR---------TPAGRWGKVEELVGACVFLASDASS--FVNGHVLY 246 (255)
T ss_pred EEEEECcccCchhhhh-------ccCHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCchhc--CccCcEEE
Confidence 9999998887643211 0001111111111 1123467899999999998865332 11467888
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 247 ~~gg 250 (255)
T PRK07523 247 VDGG 250 (255)
T ss_pred ECCC
Confidence 8877
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-15 Score=154.12 Aligned_cols=224 Identities=13% Similarity=0.100 Sum_probs=149.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++|+||||+|+||++|+++|++. +.+|+++.|... .+.+... .+ ....++..+.+|+
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~--G~~v~~~~r~~~------~~~~~~~-----~~-------~~~~~~~~~~~D~ 62 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFARE--GARVVVADRDAE------AAERVAA-----AI-------AAGGRAFARQGDV 62 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHC--CCeEEEecCCHH------HHHHHHH-----HH-------hcCCeEEEEEcCC
Confidence 36899999999999999999999998 678899888642 1111110 00 0124688999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHH----HcCCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSK----QMIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~----~~~~lk~f 200 (762)
++++ ++.+++ ..+|+|||+|+.... .+.+...+++|+.|+.++.+.+. +. +.++|
T Consensus 63 ~~~~------~~~~~~~~i~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~i 135 (252)
T PRK06138 63 GSAE------AVEALVDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQ-GGGSI 135 (252)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhc-CCeEE
Confidence 9876 454443 368999999997532 13345678999999987776654 33 55789
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
+++||..+..... ..+.|+.+|+..+.+++..+.. +++
T Consensus 136 i~~sS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~ 177 (252)
T PRK06138 136 VNTASQLALAGGR--------------------------------------GRAAYVASKGAIASLTRAMALDHATDGIR 177 (252)
T ss_pred EEECChhhccCCC--------------------------------------CccHHHHHHHHHHHHHHHHHHHHHhcCeE
Confidence 9999985432110 0157999999999999887652 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
++++|||.+.++.......+.. .+..+ .....+. .....+++++|++++++.++..... ...+.++
T Consensus 178 v~~v~pg~~~t~~~~~~~~~~~---~~~~~-~~~~~~~--------~~~~~~~~~~d~a~~~~~l~~~~~~--~~~g~~~ 243 (252)
T PRK06138 178 VNAVAPGTIDTPYFRRIFARHA---DPEAL-REALRAR--------HPMNRFGTAEEVAQAALFLASDESS--FATGTTL 243 (252)
T ss_pred EEEEEECCccCcchhhhhcccc---ChHHH-HHHHHhc--------CCCCCCcCHHHHHHHHHHHcCchhc--CccCCEE
Confidence 9999999998875433222211 11111 1111111 1122478899999999998876543 1235677
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+.++
T Consensus 244 ~~~~g 248 (252)
T PRK06138 244 VVDGG 248 (252)
T ss_pred EECCC
Confidence 77654
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.8e-15 Score=154.00 Aligned_cols=226 Identities=12% Similarity=0.056 Sum_probs=143.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+++||||+|+||++++++|++. +.+|+++.|... ..+..+++ .....++.++.+|+
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~--G~~v~~~~r~~~---~~~~~~~~---------------~~~~~~~~~~~~D~ 65 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAE--GARVVLVDRSEL---VHEVAAEL---------------RAAGGEALALTADL 65 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCchH---HHHHHHHH---------------HhcCCeEEEEEEeC
Confidence 57899999999999999999999998 678888888531 11111111 11124678899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccC----c----cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVR----F----DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~----f----~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
++++ ++..++ ..+|++||+|+... + .+.+...+++|+.|+..+++.+... .+..++
T Consensus 66 ~~~~------~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~i 139 (260)
T PRK12823 66 ETYA------GAQAAMAAAVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAI 139 (260)
T ss_pred CCHH------HHHHHHHHHHHHcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeE
Confidence 9865 333333 36899999998531 1 2345667889999888666555421 245689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+.+. + ...|+.||+..|.+++.++.. |++
T Consensus 140 v~~sS~~~~~~-----------~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 179 (260)
T PRK12823 140 VNVSSIATRGI-----------N-----------------------------RVPYSAAKGGVNALTASLAFEYAEHGIR 179 (260)
T ss_pred EEEcCccccCC-----------C-----------------------------CCccHHHHHHHHHHHHHHHHHhcccCcE
Confidence 99999754321 0 146999999999999887652 899
Q ss_pred EEEEeeeeeccCCCC-CC-CCCCCC-CCC-chHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCC
Q psy7542 277 CMILRPSIIIPIWKD-PL-PGWTDN-ING-PTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNT 352 (762)
Q Consensus 277 v~IvRPs~V~G~~~e-P~-pGWidn-~~g-p~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~ 352 (762)
+++++||.|+++... +. ..+.+. ... ...+......+.. ..-+..++|+|++++.++..... ...
T Consensus 180 v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~dva~~~~~l~s~~~~--~~~ 248 (260)
T PRK12823 180 VNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSSL---------MKRYGTIDEQVAAILFLASDEAS--YIT 248 (260)
T ss_pred EEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccCC---------cccCCCHHHHHHHHHHHcCcccc--ccc
Confidence 999999999886311 00 000000 000 0111111211111 11244689999999888764322 114
Q ss_pred ceEEEecCC
Q psy7542 353 MRVINLTAN 361 (762)
Q Consensus 353 ~~iyNi~s~ 361 (762)
++++++.++
T Consensus 249 g~~~~v~gg 257 (260)
T PRK12823 249 GTVLPVGGG 257 (260)
T ss_pred CcEEeecCC
Confidence 678998776
|
|
| >PF03015 Sterile: Male sterility protein; InterPro: IPR004262 This family represents the C-terminal region of the male sterility protein in a number of organisms | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-16 Score=143.21 Aligned_cols=78 Identities=31% Similarity=0.669 Sum_probs=76.6
Q ss_pred cCCCchhhHHHHHHhhhhhhhcccccCceeeecHHHHHHHhhcchhhhhcccccccCCCchHHHHHHHHHHHHhhcccCC
Q psy7542 399 RGYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMMNEKEAIRYEIAMFRDLDEAKAYFEMCIHGARQYLLGE 478 (762)
Q Consensus 399 lG~kP~l~~l~~ki~~~~~~l~~f~~~~w~Fd~~n~~~L~~~ls~~Dr~~F~fD~~~~id~W~~Y~~~~~~Girkyllke 478 (762)
.|++|++.++++++.+..+.++||+.++|.|+++|+++|++.|+++|++.|+||+ +.+| |++|+.+|+.|+|+|++||
T Consensus 17 ~g~kp~~~k~~~ki~~~~~~~~~F~~~eW~F~~~n~~~L~~~l~~~D~~~F~fD~-~~id-W~~Y~~~~~~G~rkyllke 94 (94)
T PF03015_consen 17 FGQKPRMVKIYRKIRKALEVLEYFTTNEWIFDNDNTRRLWERLSPEDREIFNFDI-RSID-WEEYFRNYIPGIRKYLLKE 94 (94)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHhCceeecchHHHHHHHhCchhcCceecCCC-CCCC-HHHHHHHHHHHHHHHHhCC
Confidence 5899999999999999999999999999999999999999999999999999999 9999 9999999999999999997
|
The Arabidopsis thaliana male sterility 2 (MS2) protein is involved in male gametogenesis. The MS2 protein shows sequence similarity to a jojoba protein (also a member of this group) that converts wax fatty acids to fatty alcohols. It has been suggested that a possible function of the MS2 protein may be as a fatty acyl reductase in the formation of pollen wall substances [].; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process |
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-14 Score=151.63 Aligned_cols=222 Identities=13% Similarity=0.092 Sum_probs=146.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEE-EeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYI-LLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~-LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+.+++|+||||||+||++++++|++. +.+|++ +.|... +.+++.+ .++ ....++.++.+|
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~--g~~v~~~~~r~~~------~~~~~~~-----~~~------~~~~~~~~~~~D 62 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEE--GYDIAVNYARSRK------AAEETAE-----EIE------ALGRKALAVKAN 62 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEcCCCHH------HHHHHHH-----HHH------hcCCeEEEEEcC
Confidence 36789999999999999999999998 665555 456431 1111110 111 112568889999
Q ss_pred cCCCCCCCCHHHHHhhcC-------CccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 138 VAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
+++++ ++..+++ .+|+|||+|+..... +.+...+++|+.|+..+++++... .+.++|
T Consensus 63 ~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~i 136 (250)
T PRK08063 63 VGDVE------KIKEMFAQIDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKI 136 (250)
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEE
Confidence 99876 4554443 589999999864321 234457889999999999888753 234699
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... + ...|+.||+..|.+++..+. .|++
T Consensus 137 v~~sS~~~~~~~~---------~-----------------------------~~~y~~sK~a~~~~~~~~~~~~~~~~i~ 178 (250)
T PRK08063 137 ISLSSLGSIRYLE---------N-----------------------------YTTVGVSKAALEALTRYLAVELAPKGIA 178 (250)
T ss_pred EEEcchhhccCCC---------C-----------------------------ccHHHHHHHHHHHHHHHHHHHHhHhCeE
Confidence 9999974432110 0 15799999999999987764 2899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+++++||.|..+.....++ ...+...... .. ....+++++|+|++++.++.+... ...++++
T Consensus 179 v~~i~pg~v~t~~~~~~~~-------~~~~~~~~~~-~~--------~~~~~~~~~dva~~~~~~~~~~~~--~~~g~~~ 240 (250)
T PRK08063 179 VNAVSGGAVDTDALKHFPN-------REELLEDARA-KT--------PAGRMVEPEDVANAVLFLCSPEAD--MIRGQTI 240 (250)
T ss_pred EEeEecCcccCchhhhccC-------chHHHHHHhc-CC--------CCCCCcCHHHHHHHHHHHcCchhc--CccCCEE
Confidence 9999999987654322111 1112111111 10 112478999999999998865432 1246788
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 241 ~~~gg 245 (250)
T PRK08063 241 IVDGG 245 (250)
T ss_pred EECCC
Confidence 88876
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-15 Score=159.22 Aligned_cols=164 Identities=13% Similarity=0.087 Sum_probs=114.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++||||||+||||++++++|++. +.+|+++.|.... .+++.+.+ .....++.++.+|+
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~--G~~V~~~~r~~~~---~~~~~~~~--------------~~~~~~~~~~~~D~ 64 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAAL--GMKLVLADVQQDA---LDRAVAEL--------------RAQGAEVLGVRTDV 64 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHC--CCEEEEEeCChHH---HHHHHHHH--------------HhcCCeEEEEECCC
Confidence 46789999999999999999999998 6788888885321 11111110 11124688899999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc----c---ccHHHHHHHhHHHHHHHHHHHH----HcCC----
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF----D---DYMQTYVFLNTRGTRDMLNLSK----QMIH---- 196 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f----~---~~l~~~~~~NV~GT~~LLelA~----~~~~---- 196 (762)
++++ +++.+++ .+|+|||+||.... + +.++..+++|+.|+.++++++. +...
T Consensus 65 ~d~~------~~~~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~ 138 (287)
T PRK06194 65 SDAA------QVEALADAALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPA 138 (287)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCC
Confidence 9865 5555544 57999999998643 1 3445678999999999777743 2211
Q ss_pred -ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--
Q psy7542 197 -LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-- 273 (762)
Q Consensus 197 -lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-- 273 (762)
..++|++||..+..... + .+.|+.||+..|.+++.++..
T Consensus 139 ~~g~iv~~sS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~l~~e~~ 180 (287)
T PRK06194 139 YEGHIVNTASMAGLLAPP---------A-----------------------------MGIYNVSKHAVVSLTETLYQDLS 180 (287)
T ss_pred CCeEEEEeCChhhccCCC---------C-----------------------------CcchHHHHHHHHHHHHHHHHHHh
Confidence 15899999986643210 0 157999999999999887653
Q ss_pred ----CCCEEEEeeeee
Q psy7542 274 ----GMPCMILRPSII 285 (762)
Q Consensus 274 ----glpv~IvRPs~V 285 (762)
++.+..+.||.|
T Consensus 181 ~~~~~irv~~v~pg~i 196 (287)
T PRK06194 181 LVTDQVGASVLCPYFV 196 (287)
T ss_pred hcCCCeEEEEEEeCcc
Confidence 345555666544
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-14 Score=148.60 Aligned_cols=221 Identities=16% Similarity=0.164 Sum_probs=146.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++||||||||+||++++++|++. +.+|+++.|..... .+.+.+. ++ ....++..+.+|+
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~--G~~v~~~~~~~~~~--~~~~~~~--------~~------~~~~~~~~~~~Dl 64 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQ--GANVVINYASSEAG--AEALVAE--------IG------ALGGKALAVQGDV 64 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCchhH--HHHHHHH--------HH------hcCCceEEEEcCC
Confidence 46789999999999999999999998 67788888754311 1111111 11 1135788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ ++..++ .++|+|||+|+..... +.+...+.+|+.++.++++.+... .+.++||
T Consensus 65 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v 138 (248)
T PRK05557 65 SDAE------SVERAVDEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRII 138 (248)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEE
Confidence 9876 444333 3689999999975421 234567889999999999888753 2456899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... . ...|+.+|+..|.+++.++. .++++
T Consensus 139 ~iss~~~~~~~~----------~----------------------------~~~y~~sk~a~~~~~~~~a~~~~~~~i~~ 180 (248)
T PRK05557 139 NISSVVGLMGNP----------G----------------------------QANYAASKAGVIGFTKSLARELASRGITV 180 (248)
T ss_pred EEcccccCcCCC----------C----------------------------CchhHHHHHHHHHHHHHHHHHhhhhCeEE
Confidence 999974432110 0 15799999999988876654 28999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
+++|||.+.++...+. ...+......+. ....+++++|+++++..++..... ...+++|+
T Consensus 181 ~~v~pg~~~~~~~~~~---------~~~~~~~~~~~~---------~~~~~~~~~~va~~~~~l~~~~~~--~~~g~~~~ 240 (248)
T PRK05557 181 NAVAPGFIETDMTDAL---------PEDVKEAILAQI---------PLGRLGQPEEIASAVAFLASDEAA--YITGQTLH 240 (248)
T ss_pred EEEecCccCCcccccc---------ChHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCcccC--CccccEEE
Confidence 9999997754432211 111221111111 112367899999999887765222 12468999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 241 i~~~ 244 (248)
T PRK05557 241 VNGG 244 (248)
T ss_pred ecCC
Confidence 9865
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-14 Score=148.28 Aligned_cols=222 Identities=15% Similarity=0.115 Sum_probs=148.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|+||||+|+||+++++.|++. +.+|+++.|..... .+.++++.. .+ .....++.++.+|+
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~--g~~v~~~~~~~~~~--~~~~~~~~~-----~~------~~~~~~~~~~~~Dl 68 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAAD--GADVIVLDIHPMRG--RAEADAVAA-----GI------EAAGGKALGLAFDV 68 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHC--CCeEEEEcCccccc--HHHHHHHHH-----HH------HhcCCcEEEEEccC
Confidence 46789999999999999999999998 66778877643221 122222111 11 11235788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc----c---ccHHHHHHHhHHHHHHHHHHHH-H---cCCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF----D---DYMQTYVFLNTRGTRDMLNLSK-Q---MIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f----~---~~l~~~~~~NV~GT~~LLelA~-~---~~~lk~f 200 (762)
++++ ++++++ ..+|+|||+|+.... + +.+...+++|+.|+.++++++. . ..+.++|
T Consensus 69 ~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i 142 (249)
T PRK12827 69 RDFA------ATRAALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRI 142 (249)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEE
Confidence 9876 444443 468999999997641 1 3356688999999999999998 2 1255789
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... + ...|+.+|+..+.+++..+. .+++
T Consensus 143 v~~sS~~~~~~~~---------~-----------------------------~~~y~~sK~a~~~~~~~l~~~~~~~~i~ 184 (249)
T PRK12827 143 VNIASVAGVRGNR---------G-----------------------------QVNYAASKAGLIGLTKTLANELAPRGIT 184 (249)
T ss_pred EEECCchhcCCCC---------C-----------------------------CchhHHHHHHHHHHHHHHHHHhhhhCcE
Confidence 9999975432211 0 15799999999888877655 2899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
++++|||.|.++..... . +. ...... .....+.+++|+|++++.++..... ...++++
T Consensus 185 ~~~i~pg~v~t~~~~~~-------~-~~---~~~~~~---------~~~~~~~~~~~va~~~~~l~~~~~~--~~~g~~~ 242 (249)
T PRK12827 185 VNAVAPGAINTPMADNA-------A-PT---EHLLNP---------VPVQRLGEPDEVAALVAFLVSDAAS--YVTGQVI 242 (249)
T ss_pred EEEEEECCcCCCccccc-------c-hH---HHHHhh---------CCCcCCcCHHHHHHHHHHHcCcccC--CccCcEE
Confidence 99999999987643211 0 10 111110 0112256889999998888754322 1146788
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 243 ~~~~g 247 (249)
T PRK12827 243 PVDGG 247 (249)
T ss_pred EeCCC
Confidence 88765
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-14 Score=148.78 Aligned_cols=210 Identities=13% Similarity=0.098 Sum_probs=145.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||.+++++|++. +.+|+++.|..... .+.++++. ...++.+.+|+
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~--G~~v~~~~r~~~~~--~~~~~~~~-----------------~~~~~~~~~D~ 63 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAAR--GARVALIGRGAAPL--SQTLPGVP-----------------ADALRIGGIDL 63 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHC--CCeEEEEeCChHhH--HHHHHHHh-----------------hcCceEEEeec
Confidence 46899999999999999999999998 77899999964321 11122110 13467788999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
.+.. ++..++ ..+|+|||+|+.... .+.+...+++|+.|+.++++++.+. .+.++||
T Consensus 64 ~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv 137 (239)
T PRK12828 64 VDPQ------AARRAVDEVNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIV 137 (239)
T ss_pred CCHH------HHHHHHHHHHHHhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEE
Confidence 8865 444433 368999999986432 1334567889999999999887531 2568999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... +. ..|+.+|+..+.+++..+. .++++
T Consensus 138 ~~sS~~~~~~~~---------~~-----------------------------~~y~~sk~a~~~~~~~~a~~~~~~~i~~ 179 (239)
T PRK12828 138 NIGAGAALKAGP---------GM-----------------------------GAYAAAKAGVARLTEALAAELLDRGITV 179 (239)
T ss_pred EECchHhccCCC---------Cc-----------------------------chhHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 999985432210 00 4699999998888876654 28999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
+++|||.|.++.... ..+. .....+++++|+|+++..++...... ..++.++
T Consensus 180 ~~i~pg~v~~~~~~~--------~~~~------------------~~~~~~~~~~dva~~~~~~l~~~~~~--~~g~~~~ 231 (239)
T PRK12828 180 NAVLPSIIDTPPNRA--------DMPD------------------ADFSRWVTPEQIAAVIAFLLSDEAQA--ITGASIP 231 (239)
T ss_pred EEEecCcccCcchhh--------cCCc------------------hhhhcCCCHHHHHHHHHHHhCccccc--ccceEEE
Confidence 999999988763210 0000 01123799999999999888754321 1367888
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 232 ~~g~ 235 (239)
T PRK12828 232 VDGG 235 (239)
T ss_pred ecCC
Confidence 8776
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-14 Score=152.55 Aligned_cols=226 Identities=14% Similarity=0.125 Sum_probs=150.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++|++||||||||+||++++++|++. +.+|+++.|+.... +..+++ + ....++.++.+|+
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~--G~~v~~~~r~~~~~---~~~~~~---------~------~~~~~~~~~~~D~ 64 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEE--GAIPVIFGRSAPDD---EFAEEL---------R------ALQPRAEFVQVDL 64 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHc--CCcEEEEcCChhhH---HHHHHH---------H------hcCCceEEEEccC
Confidence 57899999999999999999999998 66778888865321 111111 1 1235688999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccC---cc---ccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVR---FD---DYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVYV 203 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~---f~---~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~v 203 (762)
++++ ++..++ ..+|+|||+|+... ++ +.++..+++|+.++..+.+.+... .+..+||++
T Consensus 65 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ 138 (258)
T PRK08628 65 TDDA------QCRDAVEQTVAKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNI 138 (258)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEE
Confidence 9876 444433 36899999999532 12 456678999999999998887642 123689999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~I 279 (762)
||..+.... + ....|+.||+..|.+++..+. .+++++.
T Consensus 139 ss~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~ 180 (258)
T PRK08628 139 SSKTALTGQ----------G----------------------------GTSGYAAAKGAQLALTREWAVALAKDGVRVNA 180 (258)
T ss_pred CCHHhccCC----------C----------------------------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEE
Confidence 997553211 0 015799999999999988765 2899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
++||.|.++...+ |......+........... + ....++..+|+|++++.++...... ..+..+.+.
T Consensus 181 v~pg~v~t~~~~~---~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~dva~~~~~l~~~~~~~--~~g~~~~~~ 247 (258)
T PRK08628 181 VIPAEVMTPLYEN---WIATFDDPEAKLAAITAKI-P-------LGHRMTTAEEIADTAVFLLSERSSH--TTGQWLFVD 247 (258)
T ss_pred EecCccCCHHHHH---HhhhccCHHHHHHHHHhcC-C-------ccccCCCHHHHHHHHHHHhChhhcc--ccCceEEec
Confidence 9999998864321 2222211111111111110 0 0124688999999999988765321 135677776
Q ss_pred CC
Q psy7542 360 AN 361 (762)
Q Consensus 360 s~ 361 (762)
++
T Consensus 248 gg 249 (258)
T PRK08628 248 GG 249 (258)
T ss_pred CC
Confidence 54
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-14 Score=150.13 Aligned_cols=227 Identities=20% Similarity=0.148 Sum_probs=144.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|.... +++.. +.+... .....+.++.+|+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~--g~~v~~~~r~~~~------~~~~~-----~~l~~~----~~~~~~~~~~~Dl 64 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEA--GGIVIAADIDKEA------LNELL-----ESLGKE----FKSKKLSLVELDI 64 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEecChHH------HHHHH-----HHHHhh----cCCCceeEEEecC
Confidence 57899999999999999999999998 6778888886421 11111 111111 1123567789999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------c---ccHHHHHHHhHHHHHHHHHHHHHc---CCcc
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------D---DYMQTYVFLNTRGTRDMLNLSKQM---IHLQ 198 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~---~~l~~~~~~NV~GT~~LLelA~~~---~~lk 198 (762)
++++ ++..+++ .+|+|||+|+.... + +.+...+++|+.++..+++++... .+.+
T Consensus 65 ~d~~------~~~~~~~~~~~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 138 (256)
T PRK09186 65 TDQE------SLEEFLSKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGG 138 (256)
T ss_pred CCHH------HHHHHHHHHHHHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc
Confidence 9876 4554443 38999999975321 1 335667889998888777666432 2457
Q ss_pred EEEEEeCCcccCCCc-ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----
Q psy7542 199 LFVYVSTAYCHPKEK-VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---- 273 (762)
Q Consensus 199 ~fV~vSSay~~~~~~-~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---- 273 (762)
+||++||.++..... .+.|.. + ...+..|+.||+..|.+.+..+..
T Consensus 139 ~iv~~sS~~~~~~~~~~~~~~~---~--------------------------~~~~~~Y~~sK~a~~~l~~~la~e~~~~ 189 (256)
T PRK09186 139 NLVNISSIYGVVAPKFEIYEGT---S--------------------------MTSPVEYAAIKAGIIHLTKYLAKYFKDS 189 (256)
T ss_pred eEEEEechhhhccccchhcccc---c--------------------------cCCcchhHHHHHHHHHHHHHHHHHhCcC
Confidence 999999986543211 111110 0 011246999999999998766652
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
++.+++++||.+.+.. +..+.... ... .....+++++|+|++++.++.+.... ..+
T Consensus 190 ~i~v~~i~Pg~~~~~~-------------~~~~~~~~-~~~--------~~~~~~~~~~dva~~~~~l~~~~~~~--~~g 245 (256)
T PRK09186 190 NIRVNCVSPGGILDNQ-------------PEAFLNAY-KKC--------CNGKGMLDPDDICGTLVFLLSDQSKY--ITG 245 (256)
T ss_pred CeEEEEEecccccCCC-------------CHHHHHHH-Hhc--------CCccCCCCHHHhhhhHhheecccccc--ccC
Confidence 7999999999765431 11121111 111 01134789999999999998754321 135
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
.++++.++
T Consensus 246 ~~~~~~~g 253 (256)
T PRK09186 246 QNIIVDDG 253 (256)
T ss_pred ceEEecCC
Confidence 67777665
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.3e-15 Score=154.96 Aligned_cols=222 Identities=15% Similarity=0.147 Sum_probs=143.0
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++++|+||||||+||++++++|++. +.+|+++.|.. ++++++. ..++.++.+|++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~--G~~V~~~~r~~------~~l~~~~-----------------~~~~~~~~~Dv~ 56 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQ--GYTVYGAARRV------DKMEDLA-----------------SLGVHPLSLDVT 56 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHH-----------------hCCCeEEEeeCC
Confidence 5789999999999999999999998 67889998864 2333221 135788999999
Q ss_pred CCCCCCCHHHHHhhcC-------CccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHH----HHHHcCCccEEE
Q psy7542 140 VPDLGISAEDRQMLSE-------TIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLN----LSKQMIHLQLFV 201 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLe----lA~~~~~lk~fV 201 (762)
+++ +++.+++ ++|+|||+|+..... +.++..+++|+.|+..+++ .+++. +..++|
T Consensus 57 ~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv 129 (273)
T PRK06182 57 DEA------SIKAAVDTIIAEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQ-RSGRII 129 (273)
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhc-CCCEEE
Confidence 875 5555543 689999999975431 3456788999999655544 55544 457899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+.... | ....|+.||+..+.+++..+. .|+++
T Consensus 130 ~isS~~~~~~~----------~----------------------------~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v 171 (273)
T PRK06182 130 NISSMGGKIYT----------P----------------------------LGAWYHATKFALEGFSDALRLEVAPFGIDV 171 (273)
T ss_pred EEcchhhcCCC----------C----------------------------CccHhHHHHHHHHHHHHHHHHHhcccCCEE
Confidence 99997543211 1 114699999999998766553 28999
Q ss_pred EEEeeeeeccCCCCCCCCCCC-CC-CCchH-HHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 278 MILRPSIIIPIWKDPLPGWTD-NI-NGPTG-LLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWid-n~-~gp~~-li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
+++|||.|.++...-...... +. ..+.. ....... .. ........+...+++|++++.++..... ..
T Consensus 172 ~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~vA~~i~~~~~~~~~-----~~ 241 (273)
T PRK06182 172 VVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAA-SM----RSTYGSGRLSDPSVIADAISKAVTARRP-----KT 241 (273)
T ss_pred EEEecCCcccccchhhhhhhcccccccchHHHHHHHHH-HH----HHhhccccCCCHHHHHHHHHHHHhCCCC-----Cc
Confidence 999999997653210000000 00 00000 0000000 00 0001123578999999999999876432 24
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
.|+++.+
T Consensus 242 ~~~~g~~ 248 (273)
T PRK06182 242 RYAVGFG 248 (273)
T ss_pred eeecCcc
Confidence 6776654
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-14 Score=148.74 Aligned_cols=223 Identities=13% Similarity=0.064 Sum_probs=148.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++||||||||+||.+++++|++. +.+|+++.|+... ++++.. .+ .. ..++.++.+|+
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~--G~~V~~~~r~~~~------~~~~~~-----~~------~~-~~~~~~~~~D~ 62 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAE--GARVVVTDRNEEA------AERVAA-----EI------LA-GGRAIAVAADV 62 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHH------HHHHHH-----HH------hc-CCeEEEEECCC
Confidence 46889999999999999999999998 6789999997532 211110 01 01 24688999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCcc--------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRFD--------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f~--------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
++++ ++..+++ .+|+|||+|+..... +.+...+++|+.|+..+++.+... .+.++|
T Consensus 63 ~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~i 136 (251)
T PRK07231 63 SDEA------DVEAAVAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAI 136 (251)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEE
Confidence 9876 5555443 579999999874321 345668999999988888777642 256789
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... . -..|+.+|+..+.+++..+.. +++
T Consensus 137 v~~sS~~~~~~~~----------~----------------------------~~~y~~sk~~~~~~~~~~a~~~~~~~i~ 178 (251)
T PRK07231 137 VNVASTAGLRPRP----------G----------------------------LGWYNASKGAVITLTKALAAELGPDKIR 178 (251)
T ss_pred EEEcChhhcCCCC----------C----------------------------chHHHHHHHHHHHHHHHHHHHhhhhCeE
Confidence 9999986543211 0 157999999988888777652 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+++++||.+.++...... .. ..+ ........+ .....+++++|+|.+++.++...... ..+.++
T Consensus 179 v~~i~pg~~~t~~~~~~~---~~-~~~-~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~~--~~g~~~ 242 (251)
T PRK07231 179 VNAVAPVVVETGLLEAFM---GE-PTP-ENRAKFLAT---------IPLGRLGTPEDIANAALFLASDEASW--ITGVTL 242 (251)
T ss_pred EEEEEECccCCCcchhhh---cc-cCh-HHHHHHhcC---------CCCCCCcCHHHHHHHHHHHhCccccC--CCCCeE
Confidence 999999988654322110 00 000 111111111 11235789999999999988654321 135677
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+.++
T Consensus 243 ~~~gg 247 (251)
T PRK07231 243 VVDGG 247 (251)
T ss_pred EECCC
Confidence 77665
|
|
| >cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-15 Score=139.74 Aligned_cols=101 Identities=28% Similarity=0.522 Sum_probs=85.1
Q ss_pred CccccccceeeecCCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhh
Q psy7542 519 ENCISVSGYRLIECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRN 598 (762)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (762)
+..|++++++.. +.|++|.|+|...+..|.|.||||||..||+ ++++.
T Consensus 3 ~~~v~I~~~~~~---~~~~~Y~I~V~~~~~~w~V~RRYseF~~L~~-----------------------------~L~~~ 50 (116)
T cd06875 3 ETKIRIPSAETV---EGYTVYIIEVKVGSVEWTVKHRYSDFAELHD-----------------------------KLVAE 50 (116)
T ss_pred CEEEEECCEEEE---CCEEEEEEEEEECCeEEEEEecHHHHHHHHH-----------------------------HHHHH
Confidence 345667777654 6799999999999999999999999999998 55555
Q ss_pred chhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-CCCChhHHHHHHHHHHHHHHHHHhcC
Q psy7542 599 CKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-RSNQPKVLDERRHLLEIYLKEMFKFG 677 (762)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (762)
++- ..|.||||++ .+.+++++++||++||.||+.++...
T Consensus 51 ~~~----------------------------------------~~~~~P~Kk~~~~~~~~~ie~Rr~~Le~yL~~ll~~~ 90 (116)
T cd06875 51 HKV----------------------------------------DKDLLPPKKLIGNKSPSFVEKRRKELEIYLQTLLSFF 90 (116)
T ss_pred cCc----------------------------------------ccCcCCCccccCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 422 4577999996 66789999999999999999999877
Q ss_pred CCh--HHHHhhhCCCC
Q psy7542 678 PSR--NQVLAFLGVNS 691 (762)
Q Consensus 678 ~~~--~~~~~~~~~~~ 691 (762)
+.+ ..+++||.+++
T Consensus 91 ~~~~s~~l~~FL~~~~ 106 (116)
T cd06875 91 QKTMPRELAHFLDFHK 106 (116)
T ss_pred cccCCHHHHHHhCCCc
Confidence 766 89999999984
|
The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a |
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-14 Score=148.91 Aligned_cols=217 Identities=13% Similarity=0.120 Sum_probs=148.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++++||||+|++|+++++.|++. +++|+++.|... +++++.. ..++.++.+|+
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~--g~~V~~~~r~~~------~~~~~~~----------------~~~~~~~~~D~ 62 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQR--GARVVAAARNAA------ALDRLAG----------------ETGCEPLRLDV 62 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH----------------HhCCeEEEecC
Confidence 47899999999999999999999998 668899998632 2222110 01356788999
Q ss_pred CCCCCCCCHHHHHhhcC---CccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc----CCccEEEEEe
Q psy7542 139 AVPDLGISAEDRQMLSE---TIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM----IHLQLFVYVS 204 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~---~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~----~~lk~fV~vS 204 (762)
+++. ++..+++ .+|+|||+|+..... +.+...+.+|+.|+.++++++.+. +...+||++|
T Consensus 63 ~~~~------~v~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~s 136 (245)
T PRK07060 63 GDDA------AIRAALAAAGAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVS 136 (245)
T ss_pred CCHH------HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEc
Confidence 8765 4444443 589999999975421 345667889999999999988753 1136899999
Q ss_pred CCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEEE
Q psy7542 205 TAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMIL 280 (762)
Q Consensus 205 Say~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~Iv 280 (762)
|..+..... ....|+.+|+.+|.+++.++.. +++++.+
T Consensus 137 S~~~~~~~~--------------------------------------~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v 178 (245)
T PRK07060 137 SQAALVGLP--------------------------------------DHLAYCASKAALDAITRVLCVELGPHGIRVNSV 178 (245)
T ss_pred cHHHcCCCC--------------------------------------CCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEE
Confidence 975432210 0157999999999999887652 7999999
Q ss_pred eeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 281 RPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 281 RPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
|||.|.++..... |. .+.. ....... .....+++++|+|++++.++..... ...++++++.+
T Consensus 179 ~pg~v~~~~~~~~--~~----~~~~-~~~~~~~---------~~~~~~~~~~d~a~~~~~l~~~~~~--~~~G~~~~~~~ 240 (245)
T PRK07060 179 NPTVTLTPMAAEA--WS----DPQK-SGPMLAA---------IPLGRFAEVDDVAAPILFLLSDAAS--MVSGVSLPVDG 240 (245)
T ss_pred eeCCCCCchhhhh--cc----CHHH-HHHHHhc---------CCCCCCCCHHHHHHHHHHHcCcccC--CccCcEEeECC
Confidence 9999987753210 11 1111 1111110 1124589999999999998875432 22477888876
Q ss_pred C
Q psy7542 361 N 361 (762)
Q Consensus 361 ~ 361 (762)
+
T Consensus 241 g 241 (245)
T PRK07060 241 G 241 (245)
T ss_pred C
Confidence 5
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=151.58 Aligned_cols=230 Identities=13% Similarity=0.121 Sum_probs=149.6
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
++.+|+||||||||+||++++++|+++ +.+|+++.|... +++++. +.+. ....++..+.+|
T Consensus 2 ~l~~k~vlItGa~~~IG~~la~~l~~~--G~~V~~~~r~~~------~~~~~~-----~~~~------~~~~~~~~~~~D 62 (258)
T PRK07890 2 LLKGKVVVVSGVGPGLGRTLAVRAARA--GADVVLAARTAE------RLDEVA-----AEID------DLGRRALAVPTD 62 (258)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHc--CCEEEEEeCCHH------HHHHHH-----HHHH------HhCCceEEEecC
Confidence 467899999999999999999999998 678899988642 122211 1111 112468899999
Q ss_pred cCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEE
Q psy7542 138 VAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLF 200 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~f 200 (762)
+++++ ++..++ ..+|+|||+|+.... .+.+...+++|+.|+..+++++... +...+|
T Consensus 63 ~~~~~------~~~~~~~~~~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i 136 (258)
T PRK07890 63 ITDED------QCANLVALALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSI 136 (258)
T ss_pred CCCHH------HHHHHHHHHHHHcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEE
Confidence 99865 444333 468999999986421 1345678999999999999999752 122589
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..+.. ..+.|+.+|...|.+++.++. .+++
T Consensus 137 i~~sS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~ 178 (258)
T PRK07890 137 VMINSMVLRHSQP--------------------------------------KYGAYKMAKGALLAASQSLATELGPQGIR 178 (258)
T ss_pred EEEechhhccCCC--------------------------------------CcchhHHHHHHHHHHHHHHHHHHhhcCcE
Confidence 9999985432110 015799999999999988775 2899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCc--hHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGP--TGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp--~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
++++|||.|+++...+.-.+.....+. ..+....... .....+..++|+|++++.++..... ...++
T Consensus 179 v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~dva~a~~~l~~~~~~--~~~G~ 247 (258)
T PRK07890 179 VNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAAN---------SDLKRLPTDDEVASAVLFLASDLAR--AITGQ 247 (258)
T ss_pred EEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhc---------CCccccCCHHHHHHHHHHHcCHhhh--CccCc
Confidence 999999999887532110000000000 1111111111 1123477899999999888864321 11356
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
++.+..+
T Consensus 248 ~i~~~gg 254 (258)
T PRK07890 248 TLDVNCG 254 (258)
T ss_pred EEEeCCc
Confidence 6665554
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-14 Score=151.88 Aligned_cols=210 Identities=16% Similarity=0.105 Sum_probs=140.7
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++++|+||||||+||++++++|+++ +.+|+++.|..... ....+++++.+|++
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~--g~~V~~~~r~~~~~-------------------------~~~~~~~~~~~D~~ 55 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARA--GYRVFGTSRNPARA-------------------------APIPGVELLELDVT 55 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEEeCChhhc-------------------------cccCCCeeEEeecC
Confidence 4678999999999999999999998 67889999864321 11246789999999
Q ss_pred CCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH---cCCccEEEE
Q psy7542 140 VPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ---MIHLQLFVY 202 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~---~~~lk~fV~ 202 (762)
+++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++.+.. ..+.+++|+
T Consensus 56 d~~------~~~~~~~~~~~~~g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~ 129 (270)
T PRK06179 56 DDA------SVQAAVDEVIARAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIIN 129 (270)
T ss_pred CHH------HHHHHHHHHHHhCCCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 876 5555544 47999999997542 134567899999999999888632 125689999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~ 278 (762)
+||..+.... |. -..|+.||+..|.+++..+. .|++++
T Consensus 130 isS~~~~~~~----------~~----------------------------~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~ 171 (270)
T PRK06179 130 ISSVLGFLPA----------PY----------------------------MALYAASKHAVEGYSESLDHEVRQFGIRVS 171 (270)
T ss_pred ECCccccCCC----------CC----------------------------ccHHHHHHHHHHHHHHHHHHHHhhhCcEEE
Confidence 9998654321 11 15799999999998877654 299999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
+++||.+.++........................... .........+++|++++.++.....
T Consensus 172 ~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~va~~~~~~~~~~~~ 233 (270)
T PRK06179 172 LVEPAYTKTNFDANAPEPDSPLAEYDRERAVVSKAVA-------KAVKKADAPEVVADTVVKAALGPWP 233 (270)
T ss_pred EEeCCCcccccccccCCCCCcchhhHHHHHHHHHHHH-------hccccCCCHHHHHHHHHHHHcCCCC
Confidence 9999998776543211110000000000000000000 0112246678999999998876543
|
|
| >cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-15 Score=137.83 Aligned_cols=103 Identities=22% Similarity=0.292 Sum_probs=83.7
Q ss_pred CCccccccceeeecCCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhh
Q psy7542 518 KENCISVSGYRLIECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKR 597 (762)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (762)
.-+.|+.+. ...+.+++|++|.|+|...++.|.|.||||||..||+ ++++
T Consensus 3 ~~~~i~~~~-~~~~~~~~~~~Y~I~v~~~~~~~~v~RRYseF~~L~~-----------------------------~L~~ 52 (109)
T cd06870 3 PSVSIPSSD-EDREKKKRFTVYKVVVSVGRSSWFVFRRYAEFDKLYE-----------------------------SLKK 52 (109)
T ss_pred cceeeccce-eeccCCCCeEEEEEEEEECCeEEEEEeehHHHHHHHH-----------------------------HHHH
Confidence 344555544 3456789999999999999999999999999999998 6666
Q ss_pred hchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC--CCChhHHHHHHHHHHHHHHHHHh
Q psy7542 598 NCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR--SNQPKVLDERRHLLEIYLKEMFK 675 (762)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 675 (762)
.+.. ..+.||+|++. +.+++++++||.+||.||+.+++
T Consensus 53 ~~~~----------------------------------------~~~~lP~K~~~~~~~~~~~ie~Rr~~Le~fL~~ll~ 92 (109)
T cd06870 53 QFPA----------------------------------------SNLKIPGKRLFGNNFDPDFIKQRRAGLDEFIQRLVS 92 (109)
T ss_pred HCcc----------------------------------------cCcCCCCCcccccCCCHHHHHHHHHHHHHHHHHHhC
Confidence 5532 23468999974 57899999999999999999998
Q ss_pred cCCCh--HHHHhhhCCC
Q psy7542 676 FGPSR--NQVLAFLGVN 690 (762)
Q Consensus 676 ~~~~~--~~~~~~~~~~ 690 (762)
...-+ ..+.+||.++
T Consensus 93 ~p~l~~s~~~~~FL~~~ 109 (109)
T cd06870 93 DPKLLNHPDVRAFLQMD 109 (109)
T ss_pred CHhhhcChHHHHHhCcC
Confidence 66555 8999999875
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity. |
| >cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16 | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-15 Score=137.78 Aligned_cols=101 Identities=22% Similarity=0.379 Sum_probs=86.8
Q ss_pred cccccceeeecCCCCeEEEEEEEEEcC-eEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhc
Q psy7542 521 CISVSGYRLIECEKPYYVYVIHVRMFQ-QHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNC 599 (762)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (762)
.|++.|++..+..++|+||.|+|.... +.|.|.||||||..||+ ++++.+
T Consensus 5 ~~~i~~~~~~~~~~~~~vY~I~v~~~~~~~~~v~RRYsdF~~L~~-----------------------------~L~~~~ 55 (110)
T cd07276 5 RPPILGYEVMEERARFTVYKIRVENKVGDSWFVFRRYTDFVRLND-----------------------------KLKQMF 55 (110)
T ss_pred cceeeeEEEeecCCCeEEEEEEEEECCCCEEEEEEehHHHHHHHH-----------------------------HHHHHC
Confidence 577888998888899999999999874 89999999999999998 677666
Q ss_pred hhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC--CCCChhHHHHHHHHHHHHHHHHHhcC
Q psy7542 600 KYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI--RSNQPKVLDERRHLLEIYLKEMFKFG 677 (762)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (762)
+. ..|.+|||++ .+.+++++++||.+||.||+.+++..
T Consensus 56 ~~----------------------------------------~~~~lP~K~~~~~~~~~~fie~Rr~~Lq~fL~~ll~~~ 95 (110)
T cd07276 56 PG----------------------------------------FRLSLPPKRWFKDNFDPDFLEERQLGLQAFVNNIMAHK 95 (110)
T ss_pred CC----------------------------------------CCCCCCCcceecccCCHHHHHHHHHHHHHHHHHHhcCH
Confidence 33 4678999996 34789999999999999999999876
Q ss_pred CCh--HHHHhhhCCC
Q psy7542 678 PSR--NQVLAFLGVN 690 (762)
Q Consensus 678 ~~~--~~~~~~~~~~ 690 (762)
.-+ ..+.+||.++
T Consensus 96 ~l~~s~~~~~FL~~~ 110 (110)
T cd07276 96 DIAKCKLVREFFCLD 110 (110)
T ss_pred hhhcChHHHHHhccC
Confidence 555 8999999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking. |
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-14 Score=152.99 Aligned_cols=229 Identities=15% Similarity=0.092 Sum_probs=147.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.... .+.+.+.+ . ...++.++.+|+
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~--G~~v~~~~~~~~~---~~~~~~~~--------------~-~~~~~~~~~~Dl 75 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKH--GAKVCIVDLQDDL---GQNVCDSL--------------G-GEPNVCFFHCDV 75 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHH---HHHHHHHh--------------c-CCCceEEEEeec
Confidence 57899999999999999999999998 6788888875321 11111110 0 124788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc---------cccHHHHHHHhHHHHHHHHHHHHHc---CCccE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF---------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQL 199 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f---------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~ 199 (762)
++++ ++.++++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+-.+
T Consensus 76 ~d~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ 149 (280)
T PLN02253 76 TVED------DVSRAVDFTVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGS 149 (280)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCce
Confidence 9876 4554443 68999999997532 1345678999999999999887642 12357
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----gl 275 (762)
+|++||..+.... ..+..|+.||+..|.+++..+.. |+
T Consensus 150 ii~isS~~~~~~~--------------------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi 191 (280)
T PLN02253 150 IVSLCSVASAIGG--------------------------------------LGPHAYTGSKHAVLGLTRSVAAELGKHGI 191 (280)
T ss_pred EEEecChhhcccC--------------------------------------CCCcccHHHHHHHHHHHHHHHHHhhhcCe
Confidence 8999887542111 01257999999999999887663 89
Q ss_pred CEEEEeeeeeccCCCCC-CCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 276 PCMILRPSIIIPIWKDP-LPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP-~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
.+.+++||.|.++.... .+. .......+..... ............+.++|+|++++.++..... ...+.
T Consensus 192 ~v~~i~pg~v~t~~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~dva~~~~~l~s~~~~--~i~G~ 261 (280)
T PLN02253 192 RVNCVSPYAVPTALALAHLPE----DERTEDALAGFRA----FAGKNANLKGVELTVDDVANAVLFLASDEAR--YISGL 261 (280)
T ss_pred EEEEEeeCccccccccccccc----ccchhhhhhhhHH----HhhcCCCCcCCCCCHHHHHHHHHhhcCcccc--cccCc
Confidence 99999999887653211 110 0000111111000 0000000112246799999999998765332 11467
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
++++.++
T Consensus 262 ~i~vdgG 268 (280)
T PLN02253 262 NLMIDGG 268 (280)
T ss_pred EEEECCc
Confidence 8888766
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-14 Score=149.27 Aligned_cols=205 Identities=16% Similarity=0.151 Sum_probs=138.5
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+++||||||+|+||.+++++|++. +.+|+++.|.... . +.+.+. ++ ....++.++.+|+++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~--g~~Vi~~~r~~~~--~-~~~~~~--------l~------~~~~~~~~~~~Dl~~ 61 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARA--GAQLVLAARNETR--L-ASLAQE--------LA------DHGGEALVVPTDVSD 61 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHC--CCEEEEEeCCHHH--H-HHHHHH--------HH------hcCCcEEEEEccCCC
Confidence 468999999999999999999988 6788999886421 1 111111 11 113478889999998
Q ss_pred CCCCCCHHHHHhhcC-------CccEEEEcccccCcc--------ccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEEE
Q psy7542 141 PDLGISAEDRQMLSE-------TIHIVYHIAATVRFD--------DYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVYV 203 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f~--------~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~v 203 (762)
++ .+..+++ ++|+|||+|+..... +.+...+++|+.|+.++++.+... .+..++|++
T Consensus 62 ~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~ 135 (263)
T PRK06181 62 AE------ACERLIEAAVARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVV 135 (263)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 65 4444433 689999999875421 124567999999999999998542 234689999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~I 279 (762)
||..+..... + ...|+.||+..|.+++..+. .++++++
T Consensus 136 sS~~~~~~~~---------~-----------------------------~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~ 177 (263)
T PRK06181 136 SSLAGLTGVP---------T-----------------------------RSGYAASKHALHGFFDSLRIELADDGVAVTV 177 (263)
T ss_pred ecccccCCCC---------C-----------------------------ccHHHHHHHHHHHHHHHHHHHhhhcCceEEE
Confidence 9975432110 0 15799999999998877654 2899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF 345 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~ 345 (762)
++||.|..+..... ... .+.. ....+....++++++|+|++++.++...
T Consensus 178 i~pg~v~t~~~~~~-------~~~--------~~~~--~~~~~~~~~~~~~~~dva~~i~~~~~~~ 226 (263)
T PRK06181 178 VCPGFVATDIRKRA-------LDG--------DGKP--LGKSPMQESKIMSAEECAEAILPAIARR 226 (263)
T ss_pred EecCccccCcchhh-------ccc--------cccc--cccccccccCCCCHHHHHHHHHHHhhCC
Confidence 99998766532210 000 0110 0011122247899999999999998753
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-14 Score=146.74 Aligned_cols=203 Identities=16% Similarity=0.198 Sum_probs=135.9
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|+||||||||+||++++++|+++ .+|+++.|... .++++.+ ....++++.+|+++
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~---~~V~~~~r~~~------~~~~~~~---------------~~~~~~~~~~D~~~ 58 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT---HTLLLGGRPAE------RLDELAA---------------ELPGATPFPVDLTD 58 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh---CCEEEEeCCHH------HHHHHHH---------------HhccceEEecCCCC
Confidence 578999999999999999999987 46799998642 1111110 01357889999998
Q ss_pred CCCCCCHHHHHhhcC---CccEEEEcccccCcc-------ccHHHHHHHhHHHHHH----HHHHHHHcCCccEEEEEeCC
Q psy7542 141 PDLGISAEDRQMLSE---TIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRD----MLNLSKQMIHLQLFVYVSTA 206 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~---~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~----LLelA~~~~~lk~fV~vSSa 206 (762)
++ ++.++++ ++|+|||+|+..... +.+...+++|+.+..+ +++.+++. .+++|++||.
T Consensus 59 ~~------~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~~~~v~~ss~ 130 (227)
T PRK08219 59 PE------AIAAAVEQLGRLDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA--HGHVVFINSG 130 (227)
T ss_pred HH------HHHHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC--CCeEEEEcch
Confidence 65 6666665 589999999975421 2355678899998544 44444443 3689999998
Q ss_pred cccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--C-CCEEEEeee
Q psy7542 207 YCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--G-MPCMILRPS 283 (762)
Q Consensus 207 y~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--g-lpv~IvRPs 283 (762)
.+..... ....|+.+|...|.+++..+.. + +++..++||
T Consensus 131 ~~~~~~~--------------------------------------~~~~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg 172 (227)
T PRK08219 131 AGLRANP--------------------------------------GWGSYAASKFALRALADALREEEPGNVRVTSVHPG 172 (227)
T ss_pred HhcCcCC--------------------------------------CCchHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 6543211 0147999999999988877653 5 888888887
Q ss_pred eeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 284 IIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 284 ~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
.+.++... .+... .+. ......+++++|+|++++.++..... +.++++.-
T Consensus 173 ~~~~~~~~-------------~~~~~--~~~-------~~~~~~~~~~~dva~~~~~~l~~~~~-----~~~~~~~~ 222 (227)
T PRK08219 173 RTDTDMQR-------------GLVAQ--EGG-------EYDPERYLRPETVAKAVRFAVDAPPD-----AHITEVVV 222 (227)
T ss_pred CccchHhh-------------hhhhh--hcc-------ccCCCCCCCHHHHHHHHHHHHcCCCC-----CccceEEE
Confidence 65432110 00000 010 11224689999999999999876543 56777754
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.9e-14 Score=149.53 Aligned_cols=218 Identities=13% Similarity=0.016 Sum_probs=144.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+|+||||+|+||++++++|++. +.+|+++.|... +..++. .....++.++.+|+
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~--g~~v~~~~~~~~------~~~~~~--------------~~~~~~~~~~~~Dl 65 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAE--GWQVVLADLDRE------RGSKVA--------------KALGENAWFIAMDV 65 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHc--CCEEEEEcCCHH------HHHHHH--------------HHcCCceEEEEccC
Confidence 57899999999999999999999998 668888877532 111111 11124688999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc---------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF---------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f---------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~f 200 (762)
++++ ++.+++ ..+|+|||+||.... .+.+...+++|+.|+.++++++... ....++
T Consensus 66 ~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~i 139 (255)
T PRK05717 66 ADEA------QVAAGVAEVLGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAI 139 (255)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEE
Confidence 9875 333222 357999999997532 1235678999999999999999642 123579
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---CCCE
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---GMPC 277 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---glpv 277 (762)
|++||..+.... | ..+.|+.+|+..|.+++..+.. ++++
T Consensus 140 i~~sS~~~~~~~----------~----------------------------~~~~Y~~sKaa~~~~~~~la~~~~~~i~v 181 (255)
T PRK05717 140 VNLASTRARQSE----------P----------------------------DTEAYAASKGGLLALTHALAISLGPEIRV 181 (255)
T ss_pred EEEcchhhcCCC----------C----------------------------CCcchHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 999987543211 0 0157999999999999888764 6899
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
.+++||.|.++.... .. ...+ .....+. .....+..++|+|.++..++..... ...+.++.
T Consensus 182 ~~i~Pg~i~t~~~~~-------~~-~~~~-~~~~~~~--------~~~~~~~~~~~va~~~~~l~~~~~~--~~~g~~~~ 242 (255)
T PRK05717 182 NAVSPGWIDARDPSQ-------RR-AEPL-SEADHAQ--------HPAGRVGTVEDVAAMVAWLLSRQAG--FVTGQEFV 242 (255)
T ss_pred EEEecccCcCCcccc-------cc-chHH-HHHHhhc--------CCCCCCcCHHHHHHHHHHHcCchhc--CccCcEEE
Confidence 999999887753210 00 0011 1111111 0112467889999999887754322 11356777
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 243 ~~gg 246 (255)
T PRK05717 243 VDGG 246 (255)
T ss_pred ECCC
Confidence 7554
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=152.73 Aligned_cols=230 Identities=11% Similarity=0.029 Sum_probs=146.2
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+++|+||||+|+||+++++.|++. +.+|+++.|+... ++++. +.++.. ....++.++.+|+++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~--g~~vi~~~r~~~~------~~~~~-----~~~~~~----~~~~~~~~~~~D~~~ 64 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEE--GYRVAVADINSEK------AANVA-----QEINAE----YGEGMAYGFGADATS 64 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEECCHHH------HHHHH-----HHHHHh----cCCceeEEEEccCCC
Confidence 578999999999999999999998 6788888886421 11111 011110 011468899999998
Q ss_pred CCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CC-ccEEEE
Q psy7542 141 PDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IH-LQLFVY 202 (762)
Q Consensus 141 ~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~-lk~fV~ 202 (762)
++ ++..++ ..+|+|||+|+.... .+.++..+++|+.|+..+++.+... ++ -.++|+
T Consensus 65 ~~------~i~~~~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~ 138 (259)
T PRK12384 65 EQ------SVLALSRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQ 138 (259)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 65 444333 468999999986532 1345678899999998888877542 23 358999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~ 278 (762)
+||..+.... +. -..|+.||+..+.+++.++. .|+++.
T Consensus 139 ~ss~~~~~~~----------~~----------------------------~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~ 180 (259)
T PRK12384 139 INSKSGKVGS----------KH----------------------------NSGYSAAKFGGVGLTQSLALDLAEYGITVH 180 (259)
T ss_pred ecCcccccCC----------CC----------------------------CchhHHHHHHHHHHHHHHHHHHHHcCcEEE
Confidence 9996432110 00 15799999998888877664 389999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHh--cCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAG--KGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~--~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
++|||.++++.... .. ...+..... .+.......+......+++++|++++++.++.+... ...+++|
T Consensus 181 ~v~pg~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~l~~~~~~--~~~G~~~ 250 (259)
T PRK12384 181 SLMLGNLLKSPMFQ------SL--LPQYAKKLGIKPDEVEQYYIDKVPLKRGCDYQDVLNMLLFYASPKAS--YCTGQSI 250 (259)
T ss_pred EEecCCcccchhhh------hh--hHHHHHhcCCChHHHHHHHHHhCcccCCCCHHHHHHHHHHHcCcccc--cccCceE
Confidence 99999887652110 00 000000000 000000011223345788999999999988764322 1247899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 251 ~v~~g 255 (259)
T PRK12384 251 NVTGG 255 (259)
T ss_pred EEcCC
Confidence 99887
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-14 Score=146.99 Aligned_cols=199 Identities=18% Similarity=0.177 Sum_probs=139.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++|+||||+|+||++++++|++. +.+|+++.|+... ++++. +.+ .....++.++.+|+
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~--G~~Vi~~~r~~~~------~~~~~-----~~~------~~~~~~~~~~~~D~ 65 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKE--GVNVGLLARTEEN------LKAVA-----EEV------EAYGVKVVIATADV 65 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHC--CCEEEEEeCCHHH------HHHHH-----HHH------HHhCCeEEEEECCC
Confidence 36789999999999999999999988 6788999986421 11111 011 11134788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ ++..+++ .+|+|||+|+.... .+.+...+++|+.|+.++++.+... .+.+++|
T Consensus 66 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv 139 (239)
T PRK07666 66 SDYE------EVTAAIEQLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDII 139 (239)
T ss_pred CCHH------HHHHHHHHHHHHcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEE
Confidence 9875 4544443 68999999986432 1335668999999999999888632 2457899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... ....|+.+|+..+.+++.++. .|+++
T Consensus 140 ~~ss~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v 181 (239)
T PRK07666 140 NISSTAGQKGAA--------------------------------------VTSAYSASKFGVLGLTESLMQEVRKHNIRV 181 (239)
T ss_pred EEcchhhccCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHhhccCcEE
Confidence 999975432211 015799999998888877654 28999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF 345 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~ 345 (762)
+++|||.|.++..... . .. . .....+++.+|+|++++.++...
T Consensus 182 ~~v~pg~v~t~~~~~~-------~--------~~-------~---~~~~~~~~~~~~a~~~~~~l~~~ 224 (239)
T PRK07666 182 TALTPSTVATDMAVDL-------G--------LT-------D---GNPDKVMQPEDLAEFIVAQLKLN 224 (239)
T ss_pred EEEecCcccCcchhhc-------c--------cc-------c---cCCCCCCCHHHHHHHHHHHHhCC
Confidence 9999998876532210 0 00 0 01124688999999999998765
|
|
| >KOG1372|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=146.40 Aligned_cols=265 Identities=20% Similarity=0.134 Sum_probs=190.9
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
.+...|..||||-||.=|++|+|-||.. +.+|..++|..+.-. ..|++.+..+|. ...........|
T Consensus 24 ~~r~rkvALITGItGQDGSYLaEfLL~K--gYeVHGiiRRsSsFN-T~RIeHlY~nP~----------~h~~~~mkLHYg 90 (376)
T KOG1372|consen 24 AFRPRKVALITGITGQDGSYLAEFLLSK--GYEVHGIIRRSSSFN-TARIEHLYSNPH----------THNGASMKLHYG 90 (376)
T ss_pred CcccceEEEEecccCCCchHHHHHHHhC--CceeeEEEeeccccc-hhhhhhhhcCch----------hcccceeEEeec
Confidence 3445678999999999999999999998 778899999876543 578888776543 223367788999
Q ss_pred ecCCCCCCCCHHHHHhhcCC--ccEEEEcccccC----ccccHHHHHHHhHHHHHHHHHHHHHcC--CccEEEEEeCC--
Q psy7542 137 DVAVPDLGISAEDRQMLSET--IHIVYHIAATVR----FDDYMQTYVFLNTRGTRDMLNLSKQMI--HLQLFVYVSTA-- 206 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~~--vDiViH~AA~v~----f~~~l~~~~~~NV~GT~~LLelA~~~~--~lk~fV~vSSa-- 206 (762)
|++|.. .+.+++.. .+-|+|+||..+ |+-+ +-..++...||.+||++.+.|. .--+|-..||.
T Consensus 91 DmTDss------~L~k~I~~ikPtEiYnLaAQSHVkvSFdlp-eYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSEl 163 (376)
T KOG1372|consen 91 DMTDSS------CLIKLISTIKPTEVYNLAAQSHVKVSFDLP-EYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSEL 163 (376)
T ss_pred cccchH------HHHHHHhccCchhhhhhhhhcceEEEeecc-cceeeccchhhhhHHHHHHhcCcccceeEEecccHhh
Confidence 999976 57777775 589999999854 5543 2345778889999999999883 12478888887
Q ss_pred cccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeee
Q psy7542 207 YCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSII 285 (762)
Q Consensus 207 y~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V 285 (762)
|+.....|..|..+..|- ++|+.+|..+-.++-.+.+. ++=.+ -|+.
T Consensus 164 yGkv~e~PQsE~TPFyPR-----------------------------SPYa~aKmy~~WivvNyREAYnmfAc---NGIL 211 (376)
T KOG1372|consen 164 YGKVQEIPQSETTPFYPR-----------------------------SPYAAAKMYGYWIVVNYREAYNMFAC---NGIL 211 (376)
T ss_pred cccccCCCcccCCCCCCC-----------------------------ChhHHhhhhheEEEEEhHHhhcceee---ccEe
Confidence 554444455565433333 78999999998888877764 43222 3444
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHhcCCeE-EEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCC
Q psy7542 286 IPIWKDPLPGWTDNINGPTGLLIGAGKGIIR-TMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDF 364 (762)
Q Consensus 286 ~G~~~eP~pGWidn~~gp~~li~~~~~G~l~-~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~ 364 (762)
+. .+.|..|-.--....+.-+..+..|... ...|+.+..+||-+..|-++||..++.+..+ .-|-+.++ +
T Consensus 212 FN-HESPRRGenFVTRKItRsvakI~~gqqe~~~LGNL~a~RDWGhA~dYVEAMW~mLQ~d~P------dDfViATg--e 282 (376)
T KOG1372|consen 212 FN-HESPRRGENFVTRKITRSVAKISLGQQEKIELGNLSALRDWGHAGDYVEAMWLMLQQDSP------DDFVIATG--E 282 (376)
T ss_pred ec-CCCCccccchhhHHHHHHHHHhhhcceeeEEecchhhhcccchhHHHHHHHHHHHhcCCC------CceEEecC--C
Confidence 33 4555555321112223334444555544 4578999999999999999999999987765 57889998 8
Q ss_pred cccHHHHHHHHHHhhccC
Q psy7542 365 QITWYDIIENGKDIARNK 382 (762)
Q Consensus 365 piT~~el~~~i~~~~G~~ 382 (762)
..|.+||++......|..
T Consensus 283 ~hsVrEF~~~aF~~ig~~ 300 (376)
T KOG1372|consen 283 QHSVREFCNLAFAEIGEV 300 (376)
T ss_pred cccHHHHHHHHHHhhCcE
Confidence 899999999988887633
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-14 Score=148.68 Aligned_cols=227 Identities=17% Similarity=0.197 Sum_probs=154.1
Q ss_pred EEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCCC
Q psy7542 64 IFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDL 143 (762)
Q Consensus 64 VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~L 143 (762)
|+||||||.+|+.+++.|++. +++|.+++|..+. .+.+++. ...++++.+|+.+++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~--~~~V~~l~R~~~~----~~~~~l~-----------------~~g~~vv~~d~~~~~- 56 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA--GFSVRALVRDPSS----DRAQQLQ-----------------ALGAEVVEADYDDPE- 56 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TGCEEEEESSSHH----HHHHHHH-----------------HTTTEEEES-TT-HH-
T ss_pred CEEECCccHHHHHHHHHHHhC--CCCcEEEEeccch----hhhhhhh-----------------cccceEeecccCCHH-
Confidence 799999999999999999995 7899999998632 2222211 146788899998765
Q ss_pred CCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccCCCC
Q psy7542 144 GISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPP 223 (762)
Q Consensus 144 GLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~~~p 223 (762)
.+.++++++|.||.+-+... . .-+....+++++|++. ++++||+.|......... .
T Consensus 57 -----~l~~al~g~d~v~~~~~~~~-~--------~~~~~~~~li~Aa~~a-gVk~~v~ss~~~~~~~~~---------~ 112 (233)
T PF05368_consen 57 -----SLVAALKGVDAVFSVTPPSH-P--------SELEQQKNLIDAAKAA-GVKHFVPSSFGADYDESS---------G 112 (233)
T ss_dssp -----HHHHHHTTCSEEEEESSCSC-C--------CHHHHHHHHHHHHHHH-T-SEEEESEESSGTTTTT---------T
T ss_pred -----HHHHHHcCCceEEeecCcch-h--------hhhhhhhhHHHhhhcc-ccceEEEEEecccccccc---------c
Confidence 89999999999998876543 1 1234457899999998 699999644433321110 0
Q ss_pred CChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCCCCc
Q psy7542 224 VSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNINGP 303 (762)
Q Consensus 224 ~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~~gp 303 (762)
..|. ...-..|...|+.+++. +++++++|||+.+...-.+..+
T Consensus 113 ~~p~--------------------------~~~~~~k~~ie~~l~~~---~i~~t~i~~g~f~e~~~~~~~~-------- 155 (233)
T PF05368_consen 113 SEPE--------------------------IPHFDQKAEIEEYLRES---GIPYTIIRPGFFMENLLPPFAP-------- 155 (233)
T ss_dssp STTH--------------------------HHHHHHHHHHHHHHHHC---TSEBEEEEE-EEHHHHHTTTHH--------
T ss_pred cccc--------------------------chhhhhhhhhhhhhhhc---cccceeccccchhhhhhhhhcc--------
Confidence 0000 23445788888888766 8999999999765432211100
Q ss_pred hHHHHHHhcC-CeEEEeeCCCcccccc-cHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHhhcc
Q psy7542 304 TGLLIGAGKG-IIRTMYCDYSTCADFL-PVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIARN 381 (762)
Q Consensus 304 ~~li~~~~~G-~l~~i~gd~~~~~d~V-pVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~~G~ 381 (762)
....... ....+.++++....++ ..+|+++++..++.++... ..+..+.+++ +.+|+.|+++.+.+..|+
T Consensus 156 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~p~~~--~~~~~~~~~~---~~~t~~eia~~~s~~~G~ 227 (233)
T PF05368_consen 156 ---VVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILLDPEKH--NNGKTIFLAG---ETLTYNEIAAILSKVLGK 227 (233)
T ss_dssp ---TTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHHSGGGT--TEEEEEEEGG---GEEEHHHHHHHHHHHHTS
T ss_pred ---cccccccceEEEEccCCCccccccccHHHHHHHHHHHHcChHHh--cCCEEEEeCC---CCCCHHHHHHHHHHHHCC
Confidence 0001111 1345677777667775 9999999999999986552 1357788765 579999999999999987
Q ss_pred CC
Q psy7542 382 KV 383 (762)
Q Consensus 382 ~~ 383 (762)
+.
T Consensus 228 ~v 229 (233)
T PF05368_consen 228 KV 229 (233)
T ss_dssp EE
T ss_pred cc
Confidence 64
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.2e-14 Score=145.69 Aligned_cols=221 Identities=16% Similarity=0.088 Sum_probs=149.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++|+||||+|+||++++++|++. +.+|+++.|... .+++..+ .++ ....++.++.+|+
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~--G~~v~~~~r~~~------~~~~~~~-----~~~------~~~~~~~~~~~Dl 65 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEA--GATVAFNDGLAA------EARELAA-----ALE------AAGGRAHAIAADL 65 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHc--CCEEEEEeCCHH------HHHHHHH-----HHH------hcCCcEEEEEccC
Confidence 46899999999999999999999998 677888877532 1111110 111 1124788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ ++..++ ..+|+|||+|+.... .+.++..+++|+.|+.++++.+... .+..+||
T Consensus 66 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv 139 (250)
T PRK12939 66 ADPA------SVQRFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIV 139 (250)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEE
Confidence 9865 444443 468999999997542 1345667889999999999888642 1235899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... . ...|+.+|+..|.+++..+. .++++
T Consensus 140 ~isS~~~~~~~~----------~----------------------------~~~y~~sK~~~~~~~~~l~~~~~~~~i~v 181 (250)
T PRK12939 140 NLASDTALWGAP----------K----------------------------LGAYVASKGAVIGMTRSLARELGGRGITV 181 (250)
T ss_pred EECchhhccCCC----------C----------------------------cchHHHHHHHHHHHHHHHHHHHhhhCEEE
Confidence 999975432111 0 14699999999999987654 28999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
++++||.|.++..... ...........+ .....+++++|+|++++.++..... ...+++++
T Consensus 182 ~~v~pg~v~t~~~~~~--------~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~i~ 242 (250)
T PRK12939 182 NAIAPGLTATEATAYV--------PADERHAYYLKG---------RALERLQVPDDVAGAVLFLLSDAAR--FVTGQLLP 242 (250)
T ss_pred EEEEECCCCCcccccc--------CChHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCcccc--CccCcEEE
Confidence 9999998765532211 001111111111 2234578999999999999875432 12467888
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 243 ~~gg 246 (250)
T PRK12939 243 VNGG 246 (250)
T ss_pred ECCC
Confidence 8776
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-14 Score=148.79 Aligned_cols=221 Identities=12% Similarity=0.134 Sum_probs=146.1
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+|+||||||+|+||++++++|++. +.+|+++.|... ++++++.+ .++ ....++.++.+|++
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~--g~~v~~~~~~~~-----~~~~~~~~-----~~~------~~~~~~~~~~~Dl~ 69 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAH--GFDVAVHYNRSR-----DEAEALAA-----EIR------ALGRRAVALQADLA 69 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCCH-----HHHHHHHH-----HHH------hcCCeEEEEEcCCC
Confidence 5789999999999999999999988 677777776432 12221111 111 11246889999999
Q ss_pred CCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEE
Q psy7542 140 VPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVY 202 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~ 202 (762)
+++ ++..++ ..+|+|||+|+.... .+.+...+++|+.|+..+++.+... ..-.++|+
T Consensus 70 d~~------~~~~~~~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~ 143 (258)
T PRK09134 70 DEA------EVRALVARASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVN 143 (258)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 866 444333 358999999986432 1345678999999999999988753 12357788
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---CCCEEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---GMPCMI 279 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---glpv~I 279 (762)
+||..+... .|. ...|+.||+..|.+.+.++.. ++.+++
T Consensus 144 ~~s~~~~~~----------~p~----------------------------~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~ 185 (258)
T PRK09134 144 MIDQRVWNL----------NPD----------------------------FLSYTLSKAALWTATRTLAQALAPRIRVNA 185 (258)
T ss_pred ECchhhcCC----------CCC----------------------------chHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 877533211 011 147999999999999888763 589999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
++||.+...... .+..+ .....+.. ......++|+|++++.++..... .++.+++.
T Consensus 186 i~PG~v~t~~~~----------~~~~~-~~~~~~~~---------~~~~~~~~d~a~~~~~~~~~~~~----~g~~~~i~ 241 (258)
T PRK09134 186 IGPGPTLPSGRQ----------SPEDF-ARQHAATP---------LGRGSTPEEIAAAVRYLLDAPSV----TGQMIAVD 241 (258)
T ss_pred eecccccCCccc----------ChHHH-HHHHhcCC---------CCCCcCHHHHHHHHHHHhcCCCc----CCCEEEEC
Confidence 999987543211 01111 11111110 11247799999999999876543 47889888
Q ss_pred CCCCCcccH
Q psy7542 360 ANKDFQITW 368 (762)
Q Consensus 360 s~~~~piT~ 368 (762)
++ ..++|
T Consensus 242 gg--~~~~~ 248 (258)
T PRK09134 242 GG--QHLAW 248 (258)
T ss_pred CC--eeccc
Confidence 87 44444
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-14 Score=153.23 Aligned_cols=224 Identities=13% Similarity=0.032 Sum_probs=151.9
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
..+++|+||||||+|+||.+++++|++. +.+|++..|.... ..+.+.+.+ .....++.++.+
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~--G~~V~l~~r~~~~--~~~~~~~~~--------------~~~~~~~~~~~~ 103 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKE--GADIAIVYLDEHE--DANETKQRV--------------EKEGVKCLLIPG 103 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcch--HHHHHHHHH--------------HhcCCeEEEEEc
Confidence 3457899999999999999999999998 6788888886422 111221111 111246889999
Q ss_pred ecCCCCCCCCHHHHHhhc-------CCccEEEEcccccCcc--------ccHHHHHHHhHHHHHHHHHHHHHc-CCccEE
Q psy7542 137 DVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRFD--------DYMQTYVFLNTRGTRDMLNLSKQM-IHLQLF 200 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~--------~~l~~~~~~NV~GT~~LLelA~~~-~~lk~f 200 (762)
|+++.+ ++..++ ..+|+|||+|+..... +.+...+++|+.|+.++++++... ....++
T Consensus 104 Dl~~~~------~~~~~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~i 177 (290)
T PRK06701 104 DVSDEA------FCKDAVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAI 177 (290)
T ss_pred cCCCHH------HHHHHHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeE
Confidence 999865 344433 3589999999964221 235668999999999999998763 223589
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... . ...|+.+|+..+.+++..+.. |++
T Consensus 178 V~isS~~~~~~~~----------~----------------------------~~~Y~~sK~a~~~l~~~la~~~~~~gIr 219 (290)
T PRK06701 178 INTGSITGYEGNE----------T----------------------------LIDYSATKGAIHAFTRSLAQSLVQKGIR 219 (290)
T ss_pred EEEecccccCCCC----------C----------------------------cchhHHHHHHHHHHHHHHHHHhhhcCeE
Confidence 9999986543211 0 146999999999998888763 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
++.++||.|..+.... .. ....+.... .......+..++|+|++++.++..... ...+.++
T Consensus 220 v~~i~pG~v~T~~~~~-------~~-~~~~~~~~~---------~~~~~~~~~~~~dva~~~~~ll~~~~~--~~~G~~i 280 (290)
T PRK06701 220 VNAVAPGPIWTPLIPS-------DF-DEEKVSQFG---------SNTPMQRPGQPEELAPAYVFLASPDSS--YITGQML 280 (290)
T ss_pred EEEEecCCCCCccccc-------cc-CHHHHHHHH---------hcCCcCCCcCHHHHHHHHHHHcCcccC--CccCcEE
Confidence 9999999887653211 00 111111111 111234578899999999998876532 1146788
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 281 ~idgg 285 (290)
T PRK06701 281 HVNGG 285 (290)
T ss_pred EeCCC
Confidence 88765
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.8e-14 Score=147.77 Aligned_cols=221 Identities=15% Similarity=0.166 Sum_probs=148.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|++|||||+|+||+.++++|++. +.+|+++.|.. + .....++..+.+|+
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~--G~~v~~~~~~~--------~------------------~~~~~~~~~~~~D~ 57 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEA--GAKVIGFDQAF--------L------------------TQEDYPFATFVLDV 57 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEecch--------h------------------hhcCCceEEEEecC
Confidence 47899999999999999999999998 67888888854 0 11134688899999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ ++.++++ .+|+|||+|+.... .+.+...+++|+.++..+++.+... .+..+||
T Consensus 58 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv 131 (252)
T PRK08220 58 SDAA------AVAQVCQRLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIV 131 (252)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEE
Confidence 9876 4555443 48999999997543 1345678999999999999988542 2345899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... ....|+.+|+..|.+++..+. .++++
T Consensus 132 ~~ss~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v 173 (252)
T PRK08220 132 TVGSNAAHVPRI--------------------------------------GMAAYGASKAALTSLAKCVGLELAPYGVRC 173 (252)
T ss_pred EECCchhccCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHhhHhCeEE
Confidence 999975432110 015799999999999987765 28999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
++++||.|.++..... |. +............. ... .......++.++|+|++++.++..... ...+++..
T Consensus 174 ~~i~pg~v~t~~~~~~--~~-~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~dva~~~~~l~~~~~~--~~~g~~i~ 243 (252)
T PRK08220 174 NVVSPGSTDTDMQRTL--WV-DEDGEQQVIAGFPE-QFK----LGIPLGKIARPQEIANAVLFLASDLAS--HITLQDIV 243 (252)
T ss_pred EEEecCcCcchhhhhh--cc-chhhhhhhhhhHHH-HHh----hcCCCcccCCHHHHHHHHHHHhcchhc--CccCcEEE
Confidence 9999999988753211 00 00000000000000 000 011234689999999999998865422 11355666
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 244 ~~gg 247 (252)
T PRK08220 244 VDGG 247 (252)
T ss_pred ECCC
Confidence 6654
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.5e-14 Score=145.70 Aligned_cols=221 Identities=17% Similarity=0.117 Sum_probs=141.7
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+++|+||||||+||++++++|++. +.+|++..|... ++++++. +.++ ....++.++.+|+++
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~--G~~vv~~~~~~~-----~~~~~~~-----~~l~------~~~~~~~~~~~Dl~~ 63 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAER--GYAVCLNYLRNR-----DAAEAVV-----QAIR------RQGGEALAVAADVAD 63 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCeEEEecCCCH-----HHHHHHH-----HHHH------hCCCcEEEEEeccCC
Confidence 468999999999999999999998 555655554321 1222111 1111 112467889999998
Q ss_pred CCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc-C-----CccE
Q psy7542 141 PDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM-I-----HLQL 199 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~-~-----~lk~ 199 (762)
+. ++.++++ .+|+|||+|+.... .+.+...+++|+.|+.++++.+... . .-.+
T Consensus 64 ~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~ 137 (248)
T PRK06123 64 EA------DVLRLFEAVDRELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGA 137 (248)
T ss_pred HH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeE
Confidence 65 4544443 68999999987532 1245578999999999998887642 0 1236
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----gl 275 (762)
+|++||..+.... |. ....|+.+|+..|.+++.++.. |+
T Consensus 138 iv~~sS~~~~~~~----------~~---------------------------~~~~Y~~sKaa~~~~~~~la~~~~~~~i 180 (248)
T PRK06123 138 IVNVSSMAARLGS----------PG---------------------------EYIDYAASKGAIDTMTIGLAKEVAAEGI 180 (248)
T ss_pred EEEECchhhcCCC----------CC---------------------------CccchHHHHHHHHHHHHHHHHHhcccCe
Confidence 9999997543211 00 0035999999999998877652 89
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
+++++|||.|+++.... ......+... .+..+ ..-...++|++++++.++..... ...+++
T Consensus 181 ~v~~i~pg~v~~~~~~~--------~~~~~~~~~~-~~~~p--------~~~~~~~~d~a~~~~~l~~~~~~--~~~g~~ 241 (248)
T PRK06123 181 RVNAVRPGVIYTEIHAS--------GGEPGRVDRV-KAGIP--------MGRGGTAEEVARAILWLLSDEAS--YTTGTF 241 (248)
T ss_pred EEEEEecCcccCchhhc--------cCCHHHHHHH-HhcCC--------CCCCcCHHHHHHHHHHHhCcccc--CccCCE
Confidence 99999999998874321 0111111111 11111 01124689999999988765432 114678
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
|++.++
T Consensus 242 ~~~~gg 247 (248)
T PRK06123 242 IDVSGG 247 (248)
T ss_pred EeecCC
Confidence 988764
|
|
| >cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14 | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.4e-15 Score=138.03 Aligned_cols=101 Identities=23% Similarity=0.407 Sum_probs=81.7
Q ss_pred ccccceeee---cCCCCeEEEEEEEEEc--------CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhh
Q psy7542 522 ISVSGYRLI---ECEKPYYVYVIHVRMF--------QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQ 590 (762)
Q Consensus 522 ~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (762)
|+|.+.+.. +.+++|++|.|+|... ...|.|.||||||..||.
T Consensus 5 i~I~~~~~~~~~~~~~~~~~Y~I~V~~~~~~~~~~~~~~w~V~RRYsdF~~L~~-------------------------- 58 (119)
T cd06877 5 VSIPYVEMRRDPSNGERIYVFCIEVERNDRRAKGHEPQHWSVLRRYNEFYVLES-------------------------- 58 (119)
T ss_pred EEeeeEEEeecCCCCcEEEEEEEEEEEccccCCCCCcCceEEEechHHHHHHHH--------------------------
Confidence 344444433 3578999999999953 578999999999999998
Q ss_pred hHHHHhhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-CCCChhHHHHHHHHHHHH
Q psy7542 591 NRRQKKRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-RSNQPKVLDERRHLLEIY 669 (762)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 669 (762)
++++.++. ...|.+|+|++ .+.+++++|+||.+||.|
T Consensus 59 ---~L~~~~~~---------------------------------------~~~~~lP~K~~~~~~~~~~ie~Rr~~Le~f 96 (119)
T cd06877 59 ---KLTEFHGE---------------------------------------FPDAPLPSRRIFGPKSYEFLESKREIFEEF 96 (119)
T ss_pred ---HHHHHCCC---------------------------------------CCCCCCcCCcccCCCCHHHHHHHHHHHHHH
Confidence 66665532 15688999986 568999999999999999
Q ss_pred HHHHHhcCCCh--HHHHhhhCCC
Q psy7542 670 LKEMFKFGPSR--NQVLAFLGVN 690 (762)
Q Consensus 670 ~~~~~~~~~~~--~~~~~~~~~~ 690 (762)
||.++.....+ ..|.+||..|
T Consensus 97 L~~ll~~~~l~~s~~~~~FL~~~ 119 (119)
T cd06877 97 LQKLLQKPELRGSELLYDFLSPN 119 (119)
T ss_pred HHHHhCCcccccCHHHHHhCCCC
Confidence 99999887666 8999999765
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N |
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-13 Score=149.05 Aligned_cols=224 Identities=14% Similarity=0.091 Sum_probs=148.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+++||||+|+||++++++|++. +.+|++..|+..... .+.+.+.+ .....++.++.+|+
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~--G~~Vi~~~~~~~~~~-~~~~~~~~--------------~~~~~~~~~~~~Dl 109 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYARE--GADVAISYLPVEEED-AQDVKKII--------------EECGRKAVLLPGDL 109 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHC--CCEEEEecCCcchhh-HHHHHHHH--------------HHcCCeEEEEEccC
Confidence 57899999999999999999999998 677777766543211 12222221 11134678899999
Q ss_pred CCCCCCCCHHHHHhh-------cCCccEEEEcccccC----c----cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEE
Q psy7542 139 AVPDLGISAEDRQML-------SETIHIVYHIAATVR----F----DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l-------~~~vDiViH~AA~v~----f----~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~ 202 (762)
++++ ++.++ ...+|++||+|+... + .+.+...+++|+.|+..+++++... ..-.++|+
T Consensus 110 ~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~ 183 (294)
T PRK07985 110 SDEK------FARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIIT 183 (294)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEE
Confidence 9865 34333 345899999998632 1 2446678999999999999998752 22258999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~ 278 (762)
+||..+..... ....|+.||+..+.+++..+. .|+++.
T Consensus 184 iSS~~~~~~~~--------------------------------------~~~~Y~asKaal~~l~~~la~el~~~gIrvn 225 (294)
T PRK07985 184 TSSIQAYQPSP--------------------------------------HLLDYAATKAAILNYSRGLAKQVAEKGIRVN 225 (294)
T ss_pred ECCchhccCCC--------------------------------------CcchhHHHHHHHHHHHHHHHHHHhHhCcEEE
Confidence 99986543210 014799999999888877765 389999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
+++||.|.++.... + ..+........... ....+...+|+|++++.++..... ...+.++.+
T Consensus 226 ~i~PG~v~t~~~~~--~-----~~~~~~~~~~~~~~---------~~~r~~~pedva~~~~fL~s~~~~--~itG~~i~v 287 (294)
T PRK07985 226 IVAPGPIWTALQIS--G-----GQTQDKIPQFGQQT---------PMKRAGQPAELAPVYVYLASQESS--YVTAEVHGV 287 (294)
T ss_pred EEECCcCccccccc--c-----CCCHHHHHHHhccC---------CCCCCCCHHHHHHHHHhhhChhcC--CccccEEee
Confidence 99999998774321 0 00111221111111 112356689999999988765432 114677777
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.++
T Consensus 288 dgG 290 (294)
T PRK07985 288 CGG 290 (294)
T ss_pred CCC
Confidence 765
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.4e-14 Score=145.52 Aligned_cols=160 Identities=18% Similarity=0.224 Sum_probs=120.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++++|+||||||+||+++++.|++. +. +|+++.|..+. +++ ...++.++.+|
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~--G~~~V~~~~r~~~~------~~~------------------~~~~~~~~~~D 57 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLAR--GAAKVYAAARDPES------VTD------------------LGPRVVPLQLD 57 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CcccEEEEecChhh------hhh------------------cCCceEEEEec
Confidence 36789999999999999999999998 67 88999986532 111 12478899999
Q ss_pred cCCCCCCCCHHHHHhhcC---CccEEEEcccc-cC---c----cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEE
Q psy7542 138 VAVPDLGISAEDRQMLSE---TIHIVYHIAAT-VR---F----DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYV 203 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~---~vDiViH~AA~-v~---f----~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~v 203 (762)
+++++ ++.++.+ .+|+|||+|+. .. + .+.+...+++|+.++..+++++... .+..+||++
T Consensus 58 ~~~~~------~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~ 131 (238)
T PRK08264 58 VTDPA------SVAAAAEAASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNV 131 (238)
T ss_pred CCCHH------HHHHHHHhcCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99876 5555544 58999999997 22 1 2345567899999999999987532 245689999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~I 279 (762)
||..+..... ..+.|+.+|..+|.+++..+.. ++++++
T Consensus 132 sS~~~~~~~~--------------------------------------~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~ 173 (238)
T PRK08264 132 LSVLSWVNFP--------------------------------------NLGTYSASKAAAWSLTQALRAELAPQGTRVLG 173 (238)
T ss_pred cChhhccCCC--------------------------------------CchHhHHHHHHHHHHHHHHHHHhhhcCeEEEE
Confidence 9976532110 1157999999999998876652 899999
Q ss_pred EeeeeeccC
Q psy7542 280 LRPSIIIPI 288 (762)
Q Consensus 280 vRPs~V~G~ 288 (762)
+||+.+.++
T Consensus 174 v~pg~v~t~ 182 (238)
T PRK08264 174 VHPGPIDTD 182 (238)
T ss_pred EeCCccccc
Confidence 999987654
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=143.73 Aligned_cols=220 Identities=11% Similarity=0.079 Sum_probs=146.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||.+++++|++. +.+|+++.|... +.+.+.+ .....++..+.+|+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~--G~~vi~~~r~~~-----~~~~~~~--------------~~~~~~~~~~~~D~ 61 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEA--GADIVGAGRSEP-----SETQQQV--------------EALGRRFLSLTADL 61 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCchH-----HHHHHHH--------------HhcCCceEEEECCC
Confidence 47899999999999999999999998 678888888532 1111111 11124688999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CC-ccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IH-LQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~-lk~f 200 (762)
++++ ++..++ ..+|+|||+|+.... .+.++..+++|+.|+..+++.+... ++ ..++
T Consensus 62 ~~~~------~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~i 135 (248)
T TIGR01832 62 SDIE------AIKALVDSAVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKI 135 (248)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEE
Confidence 9876 443322 468999999997532 1346678999999999999988642 12 4689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... ....|+.||+..+.+++..+.. |+.
T Consensus 136 v~~sS~~~~~~~~--------------------------------------~~~~Y~~sKaa~~~~~~~la~e~~~~gi~ 177 (248)
T TIGR01832 136 INIASMLSFQGGI--------------------------------------RVPSYTASKHGVAGLTKLLANEWAAKGIN 177 (248)
T ss_pred EEEecHHhccCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHhCccCcE
Confidence 9999985543210 0147999999999999888763 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+++++||.|..+..... .......... ... . ....++..+|+|++++.++...... ..+.++
T Consensus 178 v~~v~pg~v~t~~~~~~-------~~~~~~~~~~-~~~---~-----~~~~~~~~~dva~~~~~l~s~~~~~--~~G~~i 239 (248)
T TIGR01832 178 VNAIAPGYMATNNTQAL-------RADEDRNAAI-LER---I-----PAGRWGTPDDIGGPAVFLASSASDY--VNGYTL 239 (248)
T ss_pred EEEEEECcCcCcchhcc-------ccChHHHHHH-Hhc---C-----CCCCCcCHHHHHHHHHHHcCccccC--cCCcEE
Confidence 99999998876532211 1111111111 111 1 1246888999999999988653321 135555
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+.++
T Consensus 240 ~~dgg 244 (248)
T TIGR01832 240 AVDGG 244 (248)
T ss_pred EeCCC
Confidence 55443
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=142.66 Aligned_cols=209 Identities=18% Similarity=0.116 Sum_probs=141.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.+++|+||||||++|++++++|++. +.+|++++|... +++++.+ .+ ... .++..+.+|+
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~--g~~V~~~~r~~~------~~~~~~~-----~l------~~~-~~~~~~~~D~ 63 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAE--GYKVAITARDQK------ELEEAAA-----EL------NNK-GNVLGLAADV 63 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHC--CCEEEEeeCCHH------HHHHHHH-----HH------hcc-CcEEEEEccC
Confidence 35789999999999999999999987 778999998642 2222111 00 111 5788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~ 202 (762)
++++ ++..++ ..+|+|||+|+.... .+.+...+++|+.|+..+++++... .+..++|+
T Consensus 64 ~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~ 137 (237)
T PRK07326 64 RDEA------DVQRAVDAIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIIN 137 (237)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEE
Confidence 9865 444333 368999999987542 1235567899999999998888642 24468999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~ 278 (762)
+||..+..... + -..|+.+|+..+.+++..+. .|++++
T Consensus 138 ~ss~~~~~~~~---------~-----------------------------~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~ 179 (237)
T PRK07326 138 ISSLAGTNFFA---------G-----------------------------GAAYNASKFGLVGFSEAAMLDLRQYGIKVS 179 (237)
T ss_pred ECChhhccCCC---------C-----------------------------CchHHHHHHHHHHHHHHHHHHhcccCcEEE
Confidence 99975432110 0 14699999988888877643 289999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
++||+.+..+..... +. ......+..+|++.+++.++..+... -.....+
T Consensus 180 ~v~pg~~~t~~~~~~---------~~------------------~~~~~~~~~~d~a~~~~~~l~~~~~~---~~~~~~~ 229 (237)
T PRK07326 180 TIMPGSVATHFNGHT---------PS------------------EKDAWKIQPEDIAQLVLDLLKMPPRT---LPSKIEV 229 (237)
T ss_pred EEeeccccCcccccc---------cc------------------hhhhccCCHHHHHHHHHHHHhCCccc---cccceEE
Confidence 999998755421100 00 00011378899999999998776542 2345555
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.++
T Consensus 230 ~~~ 232 (237)
T PRK07326 230 RPS 232 (237)
T ss_pred ecC
Confidence 544
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.5e-14 Score=145.82 Aligned_cols=224 Identities=16% Similarity=0.070 Sum_probs=145.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++||||||+|+||.+++++|++. +.+|+++.|... +++.+.+ .+ .....++.++.+|+
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~--G~~V~~~~r~~~------~~~~~~~-----~i------~~~~~~~~~~~~Dl 70 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEA--GARVVLSARKAE------ELEEAAA-----HL------EALGIDALWIAADV 70 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHH------HHHHHHH-----HH------HhcCCeEEEEEccC
Confidence 46899999999999999999999998 668888888632 1221110 01 11124678899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc----CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM----IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~----~~lk~f 200 (762)
++++ +++.++ ..+|+|||+|+.... .+.++..+++|+.|+.++++++... ++..+|
T Consensus 71 ~d~~------~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~ 144 (259)
T PRK08213 71 ADEA------DIERLAEETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRI 144 (259)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEE
Confidence 9876 443332 358999999986421 1345667899999999999987653 245789
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+....... . .....|+.+|+..|.+++.++.. |++
T Consensus 145 v~~sS~~~~~~~~~~----~------------------------------~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~ 190 (259)
T PRK08213 145 INVASVAGLGGNPPE----V------------------------------MDTIAYNTSKGAVINFTRALAAEWGPHGIR 190 (259)
T ss_pred EEECChhhccCCCcc----c------------------------------cCcchHHHHHHHHHHHHHHHHHHhcccCEE
Confidence 999997543321100 0 00157999999999999887663 799
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+.+++|+.+-.+.... . ...+......+. ...-+...+++++++..++..... ...+.++
T Consensus 191 v~~v~Pg~~~t~~~~~-------~--~~~~~~~~~~~~---------~~~~~~~~~~va~~~~~l~~~~~~--~~~G~~~ 250 (259)
T PRK08213 191 VNAIAPGFFPTKMTRG-------T--LERLGEDLLAHT---------PLGRLGDDEDLKGAALLLASDASK--HITGQIL 250 (259)
T ss_pred EEEEecCcCCCcchhh-------h--hHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccc--CccCCEE
Confidence 9999998775442110 0 111122211111 112244678899888777754432 1146677
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 251 ~~~~~ 255 (259)
T PRK08213 251 AVDGG 255 (259)
T ss_pred EECCC
Confidence 77665
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-13 Score=141.82 Aligned_cols=221 Identities=14% Similarity=0.081 Sum_probs=142.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+++||||||+||++++++|++. +.+|+++.+.... ...+.++++ .....++..+.+|+
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~--G~~vv~~~~~~~~-~~~~~~~~~---------------~~~~~~~~~~~~D~ 62 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKD--GFKVVAGCGPNSP-RRVKWLEDQ---------------KALGFDFIASEGNV 62 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHc--CCEEEEEcCCChH-HHHHHHHHH---------------HhcCCcEEEEEcCC
Confidence 36899999999999999999999998 6667765543211 111112111 11134677889999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++.+ ++.+++ ..+|+|||+|+.... .+.+...+++|+.|+..+++.+... .+..++|
T Consensus 63 ~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv 136 (246)
T PRK12938 63 GDWD------STKAAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRII 136 (246)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEE
Confidence 9875 444333 468999999997532 2345678999999977766655431 2457899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... ....|+.+|+..+.+++..+. .|+++
T Consensus 137 ~isS~~~~~~~~--------------------------------------~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v 178 (246)
T PRK12938 137 NISSVNGQKGQF--------------------------------------GQTNYSTAKAGIHGFTMSLAQEVATKGVTV 178 (246)
T ss_pred EEechhccCCCC--------------------------------------CChhHHHHHHHHHHHHHHHHHHhhhhCeEE
Confidence 999975532210 015799999988887766554 38999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
++++||.+.++.... ..+ ..+...... .....+...+++++++..++..... ...++++.
T Consensus 179 ~~i~pg~~~t~~~~~--------~~~-~~~~~~~~~---------~~~~~~~~~~~v~~~~~~l~~~~~~--~~~g~~~~ 238 (246)
T PRK12938 179 NTVSPGYIGTDMVKA--------IRP-DVLEKIVAT---------IPVRRLGSPDEIGSIVAWLASEESG--FSTGADFS 238 (246)
T ss_pred EEEEecccCCchhhh--------cCh-HHHHHHHhc---------CCccCCcCHHHHHHHHHHHcCcccC--CccCcEEE
Confidence 999999886653221 011 122222111 1123456789999999988765432 12466777
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 239 ~~~g 242 (246)
T PRK12938 239 LNGG 242 (246)
T ss_pred ECCc
Confidence 7654
|
|
| >cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.9e-15 Score=133.71 Aligned_cols=97 Identities=25% Similarity=0.451 Sum_probs=79.2
Q ss_pred ccccceeeecC-CCCeEEEEEEEEEc-CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhc
Q psy7542 522 ISVSGYRLIEC-EKPYYVYVIHVRMF-QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNC 599 (762)
Q Consensus 522 ~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (762)
..|.+.+.++. .++|+||+|.|... ...|.|.+|||||..||. ++++..
T Consensus 3 ~~v~~~~~~~~~~~~y~vY~I~v~~~~~~~w~v~RRYsdF~~L~~-----------------------------~L~~~~ 53 (107)
T cd06872 3 CRVLGAEIVKSGSKSFAVYSVAVTDNENETWVVKRRFRNFETLHR-----------------------------RLKEVP 53 (107)
T ss_pred eEEeeeEEEecCCccEEEEEEEEEECCCceEEEEehHHHHHHHHH-----------------------------HHHhcc
Confidence 45666666655 46899999999874 679999999999999998 555421
Q ss_pred hhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC--CCChhHHHHHHHHHHHHHHHHHhcC
Q psy7542 600 KYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR--SNQPKVLDERRHLLEIYLKEMFKFG 677 (762)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (762)
. ..|.||||++. +.+++++|+||.+||.||+.++..+
T Consensus 54 -~----------------------------------------~~~~lP~K~~~~~~~~~~fie~Rr~~Le~yL~~l~~~p 92 (107)
T cd06872 54 -K----------------------------------------YNLELPPKRFLSSSLDGAFIEERCKLLDKYLKDLLVIE 92 (107)
T ss_pred -C----------------------------------------CCCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhcCh
Confidence 1 24579999984 5789999999999999999999988
Q ss_pred CCh--HHHHhhhC
Q psy7542 678 PSR--NQVLAFLG 688 (762)
Q Consensus 678 ~~~--~~~~~~~~ 688 (762)
..+ ..|.+||.
T Consensus 93 ~i~~s~~~~~FL~ 105 (107)
T cd06872 93 KVAESHEVWSFLS 105 (107)
T ss_pred hhhcCHHHHHHhc
Confidence 777 89999985
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom |
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=142.27 Aligned_cols=216 Identities=19% Similarity=0.169 Sum_probs=142.7
Q ss_pred EEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCCC
Q psy7542 64 IFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDL 143 (762)
Q Consensus 64 VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~L 143 (762)
|+||||+|+||++++++|+++ +++|+++.|..... .+.+.+. + .....++.++.+|+++++
T Consensus 1 vlItG~~g~iG~~la~~l~~~--G~~v~~~~r~~~~~--~~~~~~~--------~------~~~~~~~~~~~~D~~~~~- 61 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKE--GAKVIITYRSSEEG--AEEVVEE--------L------KAYGVKALGVVCDVSDRE- 61 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCchhH--HHHHHHH--------H------HhcCCceEEEEecCCCHH-
Confidence 689999999999999999998 67889998865211 1111111 1 111246889999999876
Q ss_pred CCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEEeCC
Q psy7542 144 GISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVSTA 206 (762)
Q Consensus 144 GLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vSSa 206 (762)
+++++++ .+|+|||+|+.... .+.+...+++|+.++.++++.+... .+.++|+++||.
T Consensus 62 -----~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~ 136 (239)
T TIGR01830 62 -----DVKAVVEEIEEELGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSV 136 (239)
T ss_pred -----HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 4544443 47999999997642 1345668899999999999998753 245699999997
Q ss_pred cccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEee
Q psy7542 207 YCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILRP 282 (762)
Q Consensus 207 y~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvRP 282 (762)
.+.... |. ...|+.+|+..+.+++..+. .|++++++||
T Consensus 137 ~~~~g~----------~~----------------------------~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~p 178 (239)
T TIGR01830 137 VGLMGN----------AG----------------------------QANYAASKAGVIGFTKSLAKELASRNITVNAVAP 178 (239)
T ss_pred cccCCC----------CC----------------------------CchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEE
Confidence 443211 00 15799999988888777654 2899999999
Q ss_pred eeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 283 SIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 283 s~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
|.+.++...+. +..+...... ... ..-+.+++|++++++.++..... ...+++||+.++
T Consensus 179 g~~~~~~~~~~---------~~~~~~~~~~-~~~--------~~~~~~~~~~a~~~~~~~~~~~~--~~~g~~~~~~~g 237 (239)
T TIGR01830 179 GFIDTDMTDKL---------SEKVKKKILS-QIP--------LGRFGTPEEVANAVAFLASDEAS--YITGQVIHVDGG 237 (239)
T ss_pred CCCCChhhhhc---------ChHHHHHHHh-cCC--------cCCCcCHHHHHHHHHHHhCcccC--CcCCCEEEeCCC
Confidence 97755422111 1111112111 111 12256789999999888854322 124789999765
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-13 Score=142.08 Aligned_cols=222 Identities=15% Similarity=0.105 Sum_probs=144.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.++++|+||||+|+||+++++.|++. +.+|+++.|+... ..+.+.+. + .....++.++.+|+
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~--g~~v~~~~~~~~~--~~~~~~~~--------~------~~~~~~~~~~~~Dl 64 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAAD--GFAVAVNYAGSAA--AADELVAE--------I------EAAGGRAIAVQADV 64 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEecCCCHH--HHHHHHHH--------H------HhcCCeEEEEECCC
Confidence 36899999999999999999999998 6667766665321 11111111 1 11235788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYV 203 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~v 203 (762)
++++ ++.++++ ++|+|||+|+.... .+.++..+++|+.|+.++++.+.+. ..-.++|++
T Consensus 65 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ 138 (245)
T PRK12937 65 ADAA------AVTRLFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINL 138 (245)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEE
Confidence 9865 4544443 68999999997542 2345667899999999999888642 222589999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~I 279 (762)
||..+.... | ..+.|+.+|...|.+++..+. .++.+++
T Consensus 139 ss~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~ 180 (245)
T PRK12937 139 STSVIALPL----------P----------------------------GYGPYAASKAAVEGLVHVLANELRGRGITVNA 180 (245)
T ss_pred eeccccCCC----------C----------------------------CCchhHHHHHHHHHHHHHHHHHhhhcCeEEEE
Confidence 987442211 0 015799999999999987754 2799999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
++||.+-.+... +.. .......+.... ...-+.+++|++++++.++..... ...+.++++.
T Consensus 181 i~pg~~~t~~~~-------~~~-~~~~~~~~~~~~---------~~~~~~~~~d~a~~~~~l~~~~~~--~~~g~~~~~~ 241 (245)
T PRK12937 181 VAPGPVATELFF-------NGK-SAEQIDQLAGLA---------PLERLGTPEEIAAAVAFLAGPDGA--WVNGQVLRVN 241 (245)
T ss_pred EEeCCccCchhc-------ccC-CHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHcCcccc--CccccEEEeC
Confidence 999877554210 000 111112111111 112345789999998888854332 1246788886
Q ss_pred CC
Q psy7542 360 AN 361 (762)
Q Consensus 360 s~ 361 (762)
++
T Consensus 242 ~g 243 (245)
T PRK12937 242 GG 243 (245)
T ss_pred CC
Confidence 54
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.3e-14 Score=147.16 Aligned_cols=218 Identities=14% Similarity=0.129 Sum_probs=147.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++||||||+|+||.++++.|++. +.+|+++.|.... .+...++ ...++..+.+|+
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~--G~~Vi~~~r~~~~---~~~~~~~-----------------~~~~~~~~~~Dl 70 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAK--GARVALLDRSEDV---AEVAAQL-----------------LGGNAKGLVCDV 70 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHH---HHHHHHh-----------------hCCceEEEEecC
Confidence 47899999999999999999999998 6788999886431 1111110 124567899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ ++..++ ..+|+|||+|+..... +.+...+++|+.|+.++++++... .+..+||
T Consensus 71 ~~~~------~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv 144 (255)
T PRK06841 71 SDSQ------SVEAAVAAVISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIV 144 (255)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEE
Confidence 9865 444433 3689999999975421 345568999999999999988652 2457899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+.... +. ...|+.||+..+.+++..+.. |+.+
T Consensus 145 ~~sS~~~~~~~----------~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 186 (255)
T PRK06841 145 NLASQAGVVAL----------ER----------------------------HVAYCASKAGVVGMTKVLALEWGPYGITV 186 (255)
T ss_pred EEcchhhccCC----------CC----------------------------CchHHHHHHHHHHHHHHHHHHHHhhCeEE
Confidence 99998543211 00 147999999988888776652 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
..++||.|..+.... .| .+ ........+. ....+.+++|+|++++.++...... ..+++++
T Consensus 187 ~~v~pg~v~t~~~~~--~~----~~--~~~~~~~~~~---------~~~~~~~~~~va~~~~~l~~~~~~~--~~G~~i~ 247 (255)
T PRK06841 187 NAISPTVVLTELGKK--AW----AG--EKGERAKKLI---------PAGRFAYPEEIAAAALFLASDAAAM--ITGENLV 247 (255)
T ss_pred EEEEeCcCcCccccc--cc----ch--hHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCccccC--ccCCEEE
Confidence 999999886653210 01 00 0111111111 1235789999999999988654331 1467787
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 248 ~dgg 251 (255)
T PRK06841 248 IDGG 251 (255)
T ss_pred ECCC
Confidence 7765
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-13 Score=142.78 Aligned_cols=209 Identities=15% Similarity=0.135 Sum_probs=137.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++|+||||+|+||++++++|++. +.+|+++.|.. +.++++. .....++..+.+|+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~--g~~v~~~~r~~------~~~~~~~--------------~~~~~~~~~~~~D~ 61 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAE--GARVAITGRDP------ASLEAAR--------------AELGESALVIRADA 61 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEecCCH------HHHHHHH--------------HHhCCceEEEEecC
Confidence 36789999999999999999999998 67888888853 1222211 11124678899999
Q ss_pred CCCCCCCCHHHHHh-------hcCCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEE
Q psy7542 139 AVPDLGISAEDRQM-------LSETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYV 203 (762)
Q Consensus 139 ~~~~LGLs~~~l~~-------l~~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~v 203 (762)
++.+ +... ....+|+|||+|+..... +.+...+++|+.|+.++++++... ....++|++
T Consensus 62 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~ 135 (249)
T PRK06500 62 GDVA------AQKALAQALAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLN 135 (249)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 8865 3322 234689999999975421 345678999999999999999752 223577888
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~I 279 (762)
||..+.... |. .+.|+.+|+..|.+++.++. .|+++++
T Consensus 136 ~S~~~~~~~----------~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~ 177 (249)
T PRK06500 136 GSINAHIGM----------PN----------------------------SSVYAASKAALLSLAKTLSGELLPRGIRVNA 177 (249)
T ss_pred echHhccCC----------CC----------------------------ccHHHHHHHHHHHHHHHHHHHhhhcCeEEEE
Confidence 775332110 00 16899999999999976654 2899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF 345 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~ 345 (762)
+|||.+.++...... .... ....+...+..+. ...-+..++|+|+++..++...
T Consensus 178 i~pg~~~t~~~~~~~--~~~~-~~~~~~~~~~~~~---------~~~~~~~~~~va~~~~~l~~~~ 231 (249)
T PRK06500 178 VSPGPVQTPLYGKLG--LPEA-TLDAVAAQIQALV---------PLGRFGTPEEIAKAVLYLASDE 231 (249)
T ss_pred EeeCcCCCHHHHhhc--cCcc-chHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCcc
Confidence 999998876321100 0000 0011111121111 0112458899999999987643
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-13 Score=142.99 Aligned_cols=222 Identities=11% Similarity=0.077 Sum_probs=146.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++||||||+|+||.++++.|++. +.+|+++.|... +++++.+ .+ .....++.++.+|+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~--G~~Vi~~~r~~~------~~~~~~~-----~l------~~~~~~~~~~~~D~ 68 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEA--GADVLIAARTES------QLDEVAE-----QI------RAAGRRAHVVAADL 68 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH-----HH------HhcCCcEEEEEccC
Confidence 47899999999999999999999998 678999999642 1221110 01 01125688899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc----CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM----IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~----~~lk~f 200 (762)
++++ ++.+++ ..+|+|||+|+.... .+.+...+++|+.|+.++++++... .+..+|
T Consensus 69 ~~~~------~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~i 142 (263)
T PRK07814 69 AHPE------ATAGLAGQAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSV 142 (263)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEE
Confidence 9865 444333 368999999986432 1345678999999999999999641 245689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---CCCE
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---GMPC 277 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---glpv 277 (762)
|++||..+..... + .+.|+.||+..|.+++..+.. ++.+
T Consensus 143 v~~sS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~~~~e~~~~i~v 184 (263)
T PRK07814 143 INISSTMGRLAGR---------G-----------------------------FAAYGTAKAALAHYTRLAALDLCPRIRV 184 (263)
T ss_pred EEEccccccCCCC---------C-----------------------------CchhHHHHHHHHHHHHHHHHHHCCCceE
Confidence 9999976532110 0 157999999999999887763 6788
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
+.++||.|..+.... .. ...-+.....+.. ....+..++|+|++++.++..... ...+..+.
T Consensus 185 ~~i~Pg~v~t~~~~~-------~~-~~~~~~~~~~~~~--------~~~~~~~~~~va~~~~~l~~~~~~--~~~g~~~~ 246 (263)
T PRK07814 185 NAIAPGSILTSALEV-------VA-ANDELRAPMEKAT--------PLRRLGDPEDIAAAAVYLASPAGS--YLTGKTLE 246 (263)
T ss_pred EEEEeCCCcCchhhh-------cc-CCHHHHHHHHhcC--------CCCCCcCHHHHHHHHHHHcCcccc--CcCCCEEE
Confidence 899998775442110 00 0111111111111 112356889999999998864322 11356777
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 247 ~~~~ 250 (263)
T PRK07814 247 VDGG 250 (263)
T ss_pred ECCC
Confidence 7654
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=145.19 Aligned_cols=221 Identities=13% Similarity=0.155 Sum_probs=147.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||+.+++.|++. +.+|+++.|..+ .+++.+.+ .....++.++.+|+
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~--G~~v~~~~~~~~----~~~~~~~~--------------~~~~~~~~~~~~D~ 72 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKA--GADIIITTHGTN----WDETRRLI--------------EKEGRKVTFVQVDL 72 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCcH----HHHHHHHH--------------HhcCCceEEEEcCC
Confidence 47899999999999999999999998 778888888621 12232221 11235788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ ++..+++ .+|++||+|+.... .+.++..+++|+.|+..+++.+... .+..++|
T Consensus 73 ~~~~------~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv 146 (258)
T PRK06935 73 TKPE------SAEKVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKII 146 (258)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 9865 4444443 68999999997532 2346678999999988888776532 2346899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+..... ....|+.+|+..|.+++..+.. |+++
T Consensus 147 ~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v 188 (258)
T PRK06935 147 NIASMLSFQGGK--------------------------------------FVPAYTASKHGVAGLTKAFANELAAYNIQV 188 (258)
T ss_pred EECCHHhccCCC--------------------------------------CchhhHHHHHHHHHHHHHHHHHhhhhCeEE
Confidence 999985532210 0147999999999999887663 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
++++||.|..+.....+. ... ........ + ....+...+|+++++..++..... .-.+.++.
T Consensus 189 ~~i~PG~v~t~~~~~~~~------~~~-~~~~~~~~----~-----~~~~~~~~~dva~~~~~l~s~~~~--~~~G~~i~ 250 (258)
T PRK06935 189 NAIAPGYIKTANTAPIRA------DKN-RNDEILKR----I-----PAGRWGEPDDLMGAAVFLASRASD--YVNGHILA 250 (258)
T ss_pred EEEEeccccccchhhccc------ChH-HHHHHHhc----C-----CCCCCCCHHHHHHHHHHHcChhhc--CCCCCEEE
Confidence 999999886654322110 011 11111110 0 112467779999999887764332 11467777
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 251 ~dgg 254 (258)
T PRK06935 251 VDGG 254 (258)
T ss_pred ECCC
Confidence 7665
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.8e-14 Score=151.44 Aligned_cols=176 Identities=15% Similarity=0.120 Sum_probs=119.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|+||||||+||.+++++|++. +.+|+++.|... ++++..+ . ..++.++.+|+
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~--G~~Vv~~~R~~~------~~~~~~~--------------~-l~~v~~~~~Dl 80 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQA--GAHVIVPARRPD------VAREALA--------------G-IDGVEVVMLDL 80 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH--------------H-hhhCeEEEccC
Confidence 47899999999999999999999998 678888988632 2222211 0 12477899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-----cccHHHHHHHhHHHHHHHHHHH----HHcCCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-----DDYMQTYVFLNTRGTRDMLNLS----KQMIHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-----~~~l~~~~~~NV~GT~~LLelA----~~~~~lk~fV~ 202 (762)
++.+ +++.++ .++|+|||+||.... .+.++..+++|+.|+..+++.+ ++. +..++|+
T Consensus 81 ~d~~------~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~ 153 (315)
T PRK06196 81 ADLE------SVRAFAERFLDSGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAG-AGARVVA 153 (315)
T ss_pred CCHH------HHHHHHHHHHhcCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCeEEE
Confidence 9865 444433 468999999996432 2456778999999976666544 333 3468999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~ 278 (762)
+||..........++..+..+..+ ...|+.||+..+.+.+..+. .|++++
T Consensus 154 vSS~~~~~~~~~~~~~~~~~~~~~--------------------------~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~ 207 (315)
T PRK06196 154 LSSAGHRRSPIRWDDPHFTRGYDK--------------------------WLAYGQSKTANALFAVHLDKLGKDQGVRAF 207 (315)
T ss_pred ECCHHhccCCCCccccCccCCCCh--------------------------HHHHHHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 999743221111110000011110 15799999999998877755 289999
Q ss_pred EEeeeeeccCCC
Q psy7542 279 ILRPSIIIPIWK 290 (762)
Q Consensus 279 IvRPs~V~G~~~ 290 (762)
++|||.|.++..
T Consensus 208 ~v~PG~v~t~~~ 219 (315)
T PRK06196 208 SVHPGGILTPLQ 219 (315)
T ss_pred EeeCCcccCCcc
Confidence 999999987743
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-13 Score=144.39 Aligned_cols=192 Identities=15% Similarity=0.104 Sum_probs=133.4
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+++|+||||||+||++++++|++. +.+|+++.|.. ++++++.+ +. .. ..++..+.+|+++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~--G~~v~~~~r~~------~~~~~~~~---------~~--~~-~~~~~~~~~Dl~~ 61 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQ--GATLGLVARRT------DALQAFAA---------RL--PK-AARVSVYAADVRD 61 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH---------hc--cc-CCeeEEEEcCCCC
Confidence 478999999999999999999998 66889998863 22322211 00 11 1278899999998
Q ss_pred CCCCCCHHHHHhhc-------CCccEEEEcccccCc----c----ccHHHHHHHhHHHHHHHHHHH----HHcCCccEEE
Q psy7542 141 PDLGISAEDRQMLS-------ETIHIVYHIAATVRF----D----DYMQTYVFLNTRGTRDMLNLS----KQMIHLQLFV 201 (762)
Q Consensus 141 ~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f----~----~~l~~~~~~NV~GT~~LLelA----~~~~~lk~fV 201 (762)
++ ++.+++ ..+|+|||+|+.... . +.+...+++|+.|+..+++.. ++. +..+||
T Consensus 62 ~~------~i~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~-~~~~iv 134 (257)
T PRK07024 62 AD------ALAAAAADFIAAHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAA-RRGTLV 134 (257)
T ss_pred HH------HHHHHHHHHHHhCCCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhc-CCCEEE
Confidence 76 444433 347999999996431 1 345678999999999988743 333 457899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+.... |. ...|+.||+..|.+++..+. .|+++
T Consensus 135 ~isS~~~~~~~----------~~----------------------------~~~Y~asK~a~~~~~~~l~~e~~~~gi~v 176 (257)
T PRK07024 135 GIASVAGVRGL----------PG----------------------------AGAYSASKAAAIKYLESLRVELRPAGVRV 176 (257)
T ss_pred EEechhhcCCC----------CC----------------------------CcchHHHHHHHHHHHHHHHHHhhccCcEE
Confidence 99997653211 11 14799999999999877653 28999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF 345 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~ 345 (762)
+++|||.|.++.... + ....-.+++.+++|+.++.++.+.
T Consensus 177 ~~v~Pg~v~t~~~~~------~----------------------~~~~~~~~~~~~~a~~~~~~l~~~ 216 (257)
T PRK07024 177 VTIAPGYIRTPMTAH------N----------------------PYPMPFLMDADRFAARAARAIARG 216 (257)
T ss_pred EEEecCCCcCchhhc------C----------------------CCCCCCccCHHHHHHHHHHHHhCC
Confidence 999999886653110 0 000012468999999999988654
|
|
| >cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-14 Score=132.50 Aligned_cols=99 Identities=34% Similarity=0.524 Sum_probs=83.7
Q ss_pred ccccceeeecCCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchh
Q psy7542 522 ISVSGYRLIECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKY 601 (762)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (762)
|++..+... +++|++|.|+|...+..|.|.||||||..||+ ++++.++.
T Consensus 3 v~ip~~~~~--~~~~~~Y~I~v~~~~~~~~v~rRYseF~~L~~-----------------------------~L~~~~~~ 51 (108)
T cd06897 3 ISIPTTSVS--PKPYTVYNIQVRLPLRSYTVSRRYSEFVALHK-----------------------------QLESEVGI 51 (108)
T ss_pred EEcCCeEEc--CCCeEEEEEEEEcCCceEEEEcchHHHHHHHH-----------------------------HHHHHcCC
Confidence 566666655 68899999999999999999999999999998 66665532
Q ss_pred hhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC---CCChhHHHHHHHHHHHHHHHHHhcC-
Q psy7542 602 FIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR---SNQPKVLDERRHLLEIYLKEMFKFG- 677 (762)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~- 677 (762)
...|.||+|++. +++++++|+||.+||.||+.+++..
T Consensus 52 ---------------------------------------~~~p~lP~K~~~~~~~~~~~~ie~Rr~~Le~yL~~l~~~~~ 92 (108)
T cd06897 52 ---------------------------------------EPPYPLPPKSWFLSTSSNPKLVEERRVGLEAFLRALLNDED 92 (108)
T ss_pred ---------------------------------------CCCCCCCCcCEecccCCCHHHHHHHHHHHHHHHHHHHcCCc
Confidence 157889999864 6899999999999999999999988
Q ss_pred -CCh--HHHHhhhCCC
Q psy7542 678 -PSR--NQVLAFLGVN 690 (762)
Q Consensus 678 -~~~--~~~~~~~~~~ 690 (762)
..+ ..+.+||+++
T Consensus 93 ~~l~~s~~~~~FL~~~ 108 (108)
T cd06897 93 SRWRNSPAVKEFLNLP 108 (108)
T ss_pred cchhcCHHHHHHhCCC
Confidence 444 8999999874
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. |
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=144.64 Aligned_cols=201 Identities=13% Similarity=0.087 Sum_probs=134.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|+||||||+||++++++|++. +.+|+++.|... +++++.+ ....++.++.+|++++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~--G~~V~~~~r~~~------~~~~~~~--------------~~~~~~~~~~~Dl~~~ 58 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ--GHKVIATGRRQE------RLQELKD--------------ELGDNLYIAQLDVRNR 58 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEECCHH------HHHHHHH--------------HhccceEEEEecCCCH
Confidence 57999999999999999999998 678899998642 2222211 1124688999999986
Q ss_pred CCCCCHHHHHhhc-------CCccEEEEcccccC----c----cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEE
Q psy7542 142 DLGISAEDRQMLS-------ETIHIVYHIAATVR----F----DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYV 203 (762)
Q Consensus 142 ~LGLs~~~l~~l~-------~~vDiViH~AA~v~----f----~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~v 203 (762)
+ ++..++ .++|+|||+|+... + .+.++..+++|+.|+..+++.+... .+..++|++
T Consensus 59 ~------~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~i 132 (248)
T PRK10538 59 A------AIEEMLASLPAEWRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINI 132 (248)
T ss_pred H------HHHHHHHHHHHHcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 5 444333 36899999998632 1 1345678999999977766665421 256789999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~I 279 (762)
||..+.... + ..+.|+.+|...|.+.+..+.. ++.+++
T Consensus 133 sS~~~~~~~----------~----------------------------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~ 174 (248)
T PRK10538 133 GSTAGSWPY----------A----------------------------GGNVYGATKAFVRQFSLNLRTDLHGTAVRVTD 174 (248)
T ss_pred CCcccCCCC----------C----------------------------CCchhHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 997543110 0 0157999999999998887652 799999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF 345 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~ 345 (762)
++||.|.++..... ...+........ . + ...++..+|+|++++.++..+
T Consensus 175 v~pg~i~~~~~~~~-----~~~~~~~~~~~~--------~-~---~~~~~~~~dvA~~~~~l~~~~ 223 (248)
T PRK10538 175 IEPGLVGGTEFSNV-----RFKGDDGKAEKT--------Y-Q---NTVALTPEDVSEAVWWVATLP 223 (248)
T ss_pred EeCCeecccccchh-----hccCcHHHHHhh--------c-c---ccCCCCHHHHHHHHHHHhcCC
Confidence 99999876532100 011111000000 0 0 113568999999999988644
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.1e-14 Score=145.37 Aligned_cols=162 Identities=15% Similarity=0.128 Sum_probs=116.6
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+++||||||||+||+++++.|++. +.+|+++.|.... .+.+.+.. .....++.++.+|+++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~--G~~v~~~~r~~~~---~~~~~~~~--------------~~~~~~~~~~~~D~~~ 62 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARK--GHNVIAGVQIAPQ---VTALRAEA--------------ARRGLALRVEKLDLTD 62 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCHHH---HHHHHHHH--------------HhcCCcceEEEeeCCC
Confidence 568999999999999999999998 6788999986321 11121111 1123468899999998
Q ss_pred CCCCCCHHHHHhhcC-CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHH----HHcCCccEEEEEeCCcc
Q psy7542 141 PDLGISAEDRQMLSE-TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLS----KQMIHLQLFVYVSTAYC 208 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~-~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA----~~~~~lk~fV~vSSay~ 208 (762)
+. ++..+.. ++|+|||+|+.... .+.++..+++|+.|+..+.+.+ ++. +.++||++||..+
T Consensus 63 ~~------~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~~SS~~~ 135 (257)
T PRK09291 63 AI------DRAQAAEWDVDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVAR-GKGKVVFTSSMAG 135 (257)
T ss_pred HH------HHHHHhcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEcChhh
Confidence 75 5666655 79999999996532 1335667889999987776554 333 4579999999754
Q ss_pred cCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEeeee
Q psy7542 209 HPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILRPSI 284 (762)
Q Consensus 209 ~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvRPs~ 284 (762)
.... | ....|+.||...|.+++..+. .|++++++|||.
T Consensus 136 ~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~ 177 (257)
T PRK09291 136 LITG----------P----------------------------FTGAYCASKHALEAIAEAMHAELKPFGIQVATVNPGP 177 (257)
T ss_pred ccCC----------C----------------------------CcchhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCc
Confidence 3211 1 015799999999998876554 289999999997
Q ss_pred ec
Q psy7542 285 II 286 (762)
Q Consensus 285 V~ 286 (762)
+.
T Consensus 178 ~~ 179 (257)
T PRK09291 178 YL 179 (257)
T ss_pred cc
Confidence 64
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.6e-14 Score=166.05 Aligned_cols=228 Identities=16% Similarity=0.153 Sum_probs=152.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.|++||||||+|+||+++++.|++. +.+|+++.|... ++++... +. ... .++..+.+|+
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~--Ga~Vvl~~r~~~------~~~~~~~---------~l--~~~-~~v~~v~~Dv 479 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAE--GACVVLADLDEE------AAEAAAA---------EL--GGP-DRALGVACDV 479 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHC--cCEEEEEeCCHH------HHHHHHH---------HH--hcc-CcEEEEEecC
Confidence 57899999999999999999999988 668899998642 2222110 00 011 4788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCc-cEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHL-QLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~l-k~f 200 (762)
++++ ++..++ .++|+|||+||.... .+.++..+++|+.|+..+++.+... .+. .+|
T Consensus 480 td~~------~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~i 553 (681)
T PRK08324 480 TDEA------AVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSI 553 (681)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEE
Confidence 9865 444433 368999999996532 2345678999999999998877542 132 689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+.... + .-..|+.||+..|.+++.++.. |++
T Consensus 554 V~vsS~~~~~~~----------~----------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gIr 595 (681)
T PRK08324 554 VFIASKNAVNPG----------P----------------------------NFGAYGAAKAAELHLVRQLALELGPDGIR 595 (681)
T ss_pred EEECCccccCCC----------C----------------------------CcHHHHHHHHHHHHHHHHHHHHhcccCeE
Confidence 999997543211 0 0157999999999999887652 799
Q ss_pred EEEEeeeeec-cCCCCCCCCCCCCCCCchHHHHHHhcCCeE----EEeeCCCcccccccHHHHHHHHHHHhhcccCCCCC
Q psy7542 277 CMILRPSIII-PIWKDPLPGWTDNINGPTGLLIGAGKGIIR----TMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGN 351 (762)
Q Consensus 277 v~IvRPs~V~-G~~~eP~pGWidn~~gp~~li~~~~~G~l~----~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~ 351 (762)
+++++|+.|+ ++... .++|.. ......|... ..+.++....++++++|+|++++.++..... ..
T Consensus 596 vn~v~Pg~v~~~t~~~-~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~l~~~v~~~DvA~a~~~l~s~~~~--~~ 664 (681)
T PRK08324 596 VNGVNPDAVVRGSGIW-TGEWIE--------ARAAAYGLSEEELEEFYRARNLLKREVTPEDVAEAVVFLASGLLS--KT 664 (681)
T ss_pred EEEEeCceeecCCccc-cchhhh--------hhhhhccCChHHHHHHHHhcCCcCCccCHHHHHHHHHHHhCcccc--CC
Confidence 9999999997 44211 011110 0001111110 0123344556899999999999998742221 12
Q ss_pred CceEEEecCC
Q psy7542 352 TMRVINLTAN 361 (762)
Q Consensus 352 ~~~iyNi~s~ 361 (762)
.+.++++.++
T Consensus 665 tG~~i~vdgG 674 (681)
T PRK08324 665 TGAIITVDGG 674 (681)
T ss_pred cCCEEEECCC
Confidence 4789999887
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.8e-13 Score=140.04 Aligned_cols=190 Identities=13% Similarity=0.107 Sum_probs=135.9
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++|+||||||+||++++++|++. |.+|+++.|.. ++++++.+ ...++.++.+|++++
T Consensus 2 ~~vlItGas~giG~~la~~L~~~--G~~V~~~~r~~------~~~~~~~~---------------~~~~~~~~~~D~~~~ 58 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQ--GWQVIACGRNQ------SVLDELHT---------------QSANIFTLAFDVTDH 58 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhC--CCEEEEEECCH------HHHHHHHH---------------hcCCCeEEEeeCCCH
Confidence 68999999999999999999998 67889999853 23333211 124688899999986
Q ss_pred CCCCCHHHHHhhcCC----ccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEEeCCccc
Q psy7542 142 DLGISAEDRQMLSET----IHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYVSTAYCH 209 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~----vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~vSSay~~ 209 (762)
+ ++++++++ .|+++|+|+...+. +.+...+++|+.|+.++++++... .+-.++|++||..+.
T Consensus 59 ~------~~~~~~~~~~~~~d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~ 132 (240)
T PRK06101 59 P------GTKAALSQLPFIPELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASE 132 (240)
T ss_pred H------HHHHHHHhcccCCCEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhc
Confidence 6 56655543 58999999854321 235568999999999999998753 223579999987542
Q ss_pred CCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEeeeee
Q psy7542 210 PKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILRPSII 285 (762)
Q Consensus 210 ~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvRPs~V 285 (762)
... |. ...|+.||+..|.+.+..+. .|++++++|||.|
T Consensus 133 ~~~----------~~----------------------------~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i 174 (240)
T PRK06101 133 LAL----------PR----------------------------AEAYGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFV 174 (240)
T ss_pred cCC----------CC----------------------------CchhhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcC
Confidence 211 10 15799999999999877653 3899999999998
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 286 IPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 286 ~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
.++..... . . . ....++.+++|+.++.++....
T Consensus 175 ~t~~~~~~-------~------------~--------~-~~~~~~~~~~a~~i~~~i~~~~ 207 (240)
T PRK06101 175 ATPLTDKN-------T------------F--------A-MPMIITVEQASQEIRAQLARGK 207 (240)
T ss_pred CCCCcCCC-------C------------C--------C-CCcccCHHHHHHHHHHHHhcCC
Confidence 77532210 0 0 0 0124789999999999887653
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.6e-13 Score=141.07 Aligned_cols=222 Identities=13% Similarity=0.051 Sum_probs=146.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|++|||||+|+||.+++++|++. +.+|++..|... +++++. +.++ ....++..+.+|+
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~--G~~vvl~~r~~~------~~~~~~-----~~l~------~~~~~~~~~~~Dl 67 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEY--GAEIIINDITAE------RAELAV-----AKLR------QEGIKAHAAPFNV 67 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHc--CCEEEEEcCCHH------HHHHHH-----HHHH------hcCCeEEEEecCC
Confidence 46899999999999999999999998 678888888632 222211 1111 1124678889999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++.++ ..+|+|||+|+.... .+.++..+++|+.|+..+++.+... .+..+||
T Consensus 68 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv 141 (254)
T PRK08085 68 THKQ------EVEAAIEHIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKII 141 (254)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9876 444433 358999999996432 2456678999999999988887652 2346899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+..... ....|+.||+..|.+++..+.. |+.+
T Consensus 142 ~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 183 (254)
T PRK08085 142 NICSMQSELGRD--------------------------------------TITPYAASKGAVKMLTRGMCVELARHNIQV 183 (254)
T ss_pred EEccchhccCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHHHhhCeEE
Confidence 999975421110 1157999999999999887652 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
++++||.+..+...+.. ....+...+.. . .....+...+|+++++..++...... -.+++..
T Consensus 184 ~~v~pG~~~t~~~~~~~-------~~~~~~~~~~~-~--------~p~~~~~~~~~va~~~~~l~~~~~~~--i~G~~i~ 245 (254)
T PRK08085 184 NGIAPGYFKTEMTKALV-------EDEAFTAWLCK-R--------TPAARWGDPQELIGAAVFLSSKASDF--VNGHLLF 245 (254)
T ss_pred EEEEeCCCCCcchhhhc-------cCHHHHHHHHh-c--------CCCCCCcCHHHHHHHHHHHhCccccC--CcCCEEE
Confidence 99999988776433211 11111111111 1 11234667899999988887644321 1355665
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 246 ~dgg 249 (254)
T PRK08085 246 VDGG 249 (254)
T ss_pred ECCC
Confidence 5544
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.2e-13 Score=144.22 Aligned_cols=180 Identities=13% Similarity=0.061 Sum_probs=117.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|+||||||+||++++++|++. +.+|+++.|.... .++..+++ .. .....++.++.+|+
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~--G~~vi~~~r~~~~--~~~~~~~l---------~~----~~~~~~~~~~~~Dl 76 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAK--GAHVVLAVRNLDK--GKAAAARI---------TA----ATPGADVTLQELDL 76 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHC--CCEEEEEeCCHHH--HHHHHHHH---------HH----hCCCCceEEEECCC
Confidence 47899999999999999999999998 6788889886421 11111111 11 01124688999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-----cccHHHHHHHhHHH----HHHHHHHHHHcCCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-----DDYMQTYVFLNTRG----TRDMLNLSKQMIHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-----~~~l~~~~~~NV~G----T~~LLelA~~~~~lk~fV~ 202 (762)
++.+ ++.+++ ..+|+|||+||.... .+.++..+++|+.| +..+++.+++. +..++|+
T Consensus 77 ~d~~------~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~ 149 (306)
T PRK06197 77 TSLA------SVRAAADALRAAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV-PGSRVVT 149 (306)
T ss_pred CCHH------HHHHHHHHHHhhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC-CCCEEEE
Confidence 9876 444433 358999999996532 24456788999999 66666666654 4479999
Q ss_pred EeCCcccC-CCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 203 VSTAYCHP-KEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 203 vSSay~~~-~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
+||..+.. .....++.....+.. ....|+.||+..+.+.+..+.+ ++++
T Consensus 150 vSS~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v 203 (306)
T PRK06197 150 VSSGGHRIRAAIHFDDLQWERRYN--------------------------RVAAYGQSKLANLLFTYELQRRLAAAGATT 203 (306)
T ss_pred ECCHHHhccCCCCccccCcccCCC--------------------------cHHHHHHHHHHHHHHHHHHHHHhhcCCCCe
Confidence 99974322 111111110000110 1157999999999998877652 5665
Q ss_pred EEE--eeeeeccC
Q psy7542 278 MIL--RPSIIIPI 288 (762)
Q Consensus 278 ~Iv--RPs~V~G~ 288 (762)
+++ .||.|..+
T Consensus 204 ~~v~~~PG~v~T~ 216 (306)
T PRK06197 204 IAVAAHPGVSNTE 216 (306)
T ss_pred EEEEeCCCcccCc
Confidence 554 68877554
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-13 Score=141.65 Aligned_cols=201 Identities=14% Similarity=0.042 Sum_probs=137.7
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+++||||||++|..++++|++. +.+|+++.|+... .+.+.+.. .....++.++.+|++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~--G~~V~~~~r~~~~---~~~~~~~~--------------~~~~~~~~~~~~D~~ 65 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKA--GWDLALVARSQDA---LEALAAEL--------------RSTGVKAAAYSIDLS 65 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCHHH---HHHHHHHH--------------HhCCCcEEEEEccCC
Confidence 4689999999999999999999998 6689999996421 11121111 111257889999999
Q ss_pred CCCCCCCHHHHHhhc-------CCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEE
Q psy7542 140 VPDLGISAEDRQMLS-------ETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVY 202 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~ 202 (762)
+++ ++..++ ..+|+|||+|+..... +.++..+++|+.|+.++++.+... .+..++|+
T Consensus 66 ~~~------~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~ 139 (241)
T PRK07454 66 NPE------AIAPGIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIIN 139 (241)
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 876 444333 3589999999965321 345667899999998888776431 24578999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~ 278 (762)
+||..+..... ....|+.||+..+.+++..+. .|++++
T Consensus 140 isS~~~~~~~~--------------------------------------~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~ 181 (241)
T PRK07454 140 VSSIAARNAFP--------------------------------------QWGAYCVSKAALAAFTKCLAEEERSHGIRVC 181 (241)
T ss_pred EccHHhCcCCC--------------------------------------CccHHHHHHHHHHHHHHHHHHHhhhhCCEEE
Confidence 99986543210 015799999999988876543 289999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
++|||.+-.+.... .. .... ....-+++.+|+|++++.++..+..
T Consensus 182 ~i~pg~i~t~~~~~------~~--------------~~~~----~~~~~~~~~~~va~~~~~l~~~~~~ 226 (241)
T PRK07454 182 TITLGAVNTPLWDT------ET--------------VQAD----FDRSAMLSPEQVAQTILHLAQLPPS 226 (241)
T ss_pred EEecCcccCCcccc------cc--------------cccc----cccccCCCHHHHHHHHHHHHcCCcc
Confidence 99999876542110 00 0000 0012358999999999999876643
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-13 Score=144.73 Aligned_cols=195 Identities=14% Similarity=0.039 Sum_probs=134.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++|+||||||+||++++++|++. +.+|.+..|+. ++++++.. ...++.++.+|+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~--G~~v~~~~r~~------~~~~~~~~---------------~~~~~~~~~~D~ 59 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAAL--GARVAIGDLDE------ALAKETAA---------------ELGLVVGGPLDV 59 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH---------------HhccceEEEccC
Confidence 46889999999999999999999998 67788888853 22222211 012577899999
Q ss_pred CCCCCCCCHHHHHhh-------cCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQML-------SETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l-------~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ ++..+ ...+|++||+||.... .+.+...+++|+.|+..+++.+... .+..++|
T Consensus 60 ~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv 133 (273)
T PRK07825 60 TDPA------SFAAFLDAVEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVV 133 (273)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 9875 33332 3468999999997532 1245668899999999988776532 2456899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... . ...|+.||+..+.+.+..+. .|+++
T Consensus 134 ~isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~~~~~l~~el~~~gi~v 175 (273)
T PRK07825 134 NVASLAGKIPVP----------G----------------------------MATYCASKHAVVGFTDAARLELRGTGVHV 175 (273)
T ss_pred EEcCccccCCCC----------C----------------------------CcchHHHHHHHHHHHHHHHHHhhccCcEE
Confidence 999986543211 0 15799999877766555433 38999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
++++||.|-.+... +. .......+++++|+|++++.++.+...
T Consensus 176 ~~v~Pg~v~t~~~~---------------------~~------~~~~~~~~~~~~~va~~~~~~l~~~~~ 218 (273)
T PRK07825 176 SVVLPSFVNTELIA---------------------GT------GGAKGFKNVEPEDVAAAIVGTVAKPRP 218 (273)
T ss_pred EEEeCCcCcchhhc---------------------cc------ccccCCCCCCHHHHHHHHHHHHhCCCC
Confidence 99999976433211 00 001123478999999999999876543
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=143.69 Aligned_cols=224 Identities=12% Similarity=0.074 Sum_probs=144.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||||+||++++++|++. +.+|+++.|.... ....++.++.+|+
T Consensus 7 ~~~k~vlItGas~gIG~~ia~~l~~~--G~~v~~~~r~~~~--------------------------~~~~~~~~~~~D~ 58 (260)
T PRK06523 7 LAGKRALVTGGTKGIGAATVARLLEA--GARVVTTARSRPD--------------------------DLPEGVEFVAADL 58 (260)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHC--CCEEEEEeCChhh--------------------------hcCCceeEEecCC
Confidence 57899999999999999999999998 6788999986421 0124678899999
Q ss_pred CCCCCCCCHHHHHh-------hcCCccEEEEcccccCc---------cccHHHHHHHhHHHHHHHHHHHHHc---CCccE
Q psy7542 139 AVPDLGISAEDRQM-------LSETIHIVYHIAATVRF---------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQL 199 (762)
Q Consensus 139 ~~~~LGLs~~~l~~-------l~~~vDiViH~AA~v~f---------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~ 199 (762)
++++ +++. ....+|+|||+|+.... .+.++..+++|+.|+..+++.+... .+..+
T Consensus 59 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ 132 (260)
T PRK06523 59 TTAE------GCAAVARAVLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGV 132 (260)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcE
Confidence 9865 3332 23468999999985421 2346678999999998887665431 13468
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 275 (762)
+|++||..+.... +. ....|+.||+..|.+++..+. .|+
T Consensus 133 ii~isS~~~~~~~--------~~-----------------------------~~~~Y~~sK~a~~~l~~~~a~~~~~~gi 175 (260)
T PRK06523 133 IIHVTSIQRRLPL--------PE-----------------------------STTAYAAAKAALSTYSKSLSKEVAPKGV 175 (260)
T ss_pred EEEEecccccCCC--------CC-----------------------------CcchhHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9999997543211 00 015799999999988887765 289
Q ss_pred CEEEEeeeeeccCCCCCC-CCCCCCCC-CchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 276 PCMILRPSIIIPIWKDPL-PGWTDNIN-GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~-pGWidn~~-gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
.+++++||.|.++..... +.+.+... .+......+.... ... ....+...+|+|+++..++..... ...+
T Consensus 176 ~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----p~~~~~~~~~va~~~~~l~s~~~~--~~~G 247 (260)
T PRK06523 176 RVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSL-GGI-----PLGRPAEPEEVAELIAFLASDRAA--SITG 247 (260)
T ss_pred EEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHh-ccC-----ccCCCCCHHHHHHHHHHHhCcccc--cccC
Confidence 999999999876642110 00000000 0001111110000 000 012245789999999888865322 1146
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++++.++
T Consensus 248 ~~~~vdgg 255 (260)
T PRK06523 248 TEYVIDGG 255 (260)
T ss_pred ceEEecCC
Confidence 78888776
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.2e-13 Score=139.01 Aligned_cols=217 Identities=12% Similarity=0.060 Sum_probs=144.2
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|+||||+|+||.+++++|++. +.+|+++.|... ... ..+.+.. .....++.++.+|++++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~--g~~vi~~~r~~~-~~~-~~~~~~~--------------~~~~~~~~~~~~D~~~~ 64 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLND--GYRVIATYFSGN-DCA-KDWFEEY--------------GFTEDQVRLKELDVTDT 64 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCcH-HHH-HHHHHHh--------------hccCCeEEEEEcCCCCH
Confidence 58999999999999999999998 678999998753 111 1111100 11235688999999986
Q ss_pred CCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHH----HHcCCccEEEEE
Q psy7542 142 DLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLS----KQMIHLQLFVYV 203 (762)
Q Consensus 142 ~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA----~~~~~lk~fV~v 203 (762)
+ ++..++ ..+|+|||+|+.... .+.++..+++|+.|+.++.+.+ ++. +..+||++
T Consensus 65 ~------~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~i 137 (245)
T PRK12824 65 E------ECAEALAEIEEEEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQ-GYGRIINI 137 (245)
T ss_pred H------HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCeEEEEE
Confidence 5 344333 358999999987531 2345668899999998885544 443 45799999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~I 279 (762)
||..+.... +. ...|+.+|+..+.+++..+. .++++++
T Consensus 138 ss~~~~~~~----------~~----------------------------~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~ 179 (245)
T PRK12824 138 SSVNGLKGQ----------FG----------------------------QTNYSAAKAGMIGFTKALASEGARYGITVNC 179 (245)
T ss_pred CChhhccCC----------CC----------------------------ChHHHHHHHHHHHHHHHHHHHHHHhCeEEEE
Confidence 998654221 00 13699999988888777654 2899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
++||.+.++..... ........... .....+..++++++++..++..... .-.++++++.
T Consensus 180 v~pg~~~t~~~~~~---------~~~~~~~~~~~---------~~~~~~~~~~~va~~~~~l~~~~~~--~~~G~~~~~~ 239 (245)
T PRK12824 180 IAPGYIATPMVEQM---------GPEVLQSIVNQ---------IPMKRLGTPEEIAAAVAFLVSEAAG--FITGETISIN 239 (245)
T ss_pred EEEcccCCcchhhc---------CHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCcccc--CccCcEEEEC
Confidence 99998876543211 11111111111 1123456789999999887754322 1247899998
Q ss_pred CC
Q psy7542 360 AN 361 (762)
Q Consensus 360 s~ 361 (762)
++
T Consensus 240 ~g 241 (245)
T PRK12824 240 GG 241 (245)
T ss_pred CC
Confidence 87
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.9e-13 Score=137.85 Aligned_cols=210 Identities=10% Similarity=0.011 Sum_probs=140.0
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+|+||||||||+||++++++|++. +.+|+++.|..... ...+++.+|++
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~--G~~v~~~~r~~~~~----------------------------~~~~~~~~D~~ 51 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANL--GHQVIGIARSAIDD----------------------------FPGELFACDLA 51 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHC--CCEEEEEeCCcccc----------------------------cCceEEEeeCC
Confidence 5789999999999999999999998 67889999875320 01246789999
Q ss_pred CCCCCCCHHHHHhhcC------CccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEE
Q psy7542 140 VPDLGISAEDRQMLSE------TIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYV 203 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~------~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~v 203 (762)
+++ ++..+++ ++|+|||+|+..... +.+...+++|+.|+.++.+.+... .+..++|++
T Consensus 52 ~~~------~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ 125 (234)
T PRK07577 52 DIE------QTAATLAQINEIHPVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNI 125 (234)
T ss_pred CHH------HHHHHHHHHHHhCCCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 865 4444433 579999999975431 345567899999988887776431 245799999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~I 279 (762)
||....+. + ....|+.||+..|.+++..+. .|+.+++
T Consensus 126 sS~~~~~~-----------~----------------------------~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~ 166 (234)
T PRK07577 126 CSRAIFGA-----------L----------------------------DRTSYSAAKSALVGCTRTWALELAEYGITVNA 166 (234)
T ss_pred ccccccCC-----------C----------------------------CchHHHHHHHHHHHHHHHHHHHHHhhCcEEEE
Confidence 99753221 0 015799999999988877654 2899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
+|||.+..+... ................. ........+|+|++++.++..... ...+.++++.
T Consensus 167 i~pg~~~t~~~~------~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~a~~~~~l~~~~~~--~~~g~~~~~~ 229 (234)
T PRK07577 167 VAPGPIETELFR------QTRPVGSEEEKRVLASI---------PMRRLGTPEEVAAAIAFLLSDDAG--FITGQVLGVD 229 (234)
T ss_pred EecCcccCcccc------cccccchhHHHHHhhcC---------CCCCCcCHHHHHHHHHHHhCcccC--CccceEEEec
Confidence 999988654311 00000001111111110 112245779999999998865432 1246788776
Q ss_pred CC
Q psy7542 360 AN 361 (762)
Q Consensus 360 s~ 361 (762)
++
T Consensus 230 g~ 231 (234)
T PRK07577 230 GG 231 (234)
T ss_pred CC
Confidence 55
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-13 Score=142.41 Aligned_cols=227 Identities=13% Similarity=0.102 Sum_probs=144.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCC-CcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKK-NKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~-~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++|+||||||+|+||.+++++|++. +.+|+++.+... .....+++.+.++ ....++..+.+|
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~--G~~vv~i~~~~~~~~~~~~~~~~~l~--------------~~~~~~~~~~~D 69 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQ--GAKAVAIHYNSAASKADAEETVAAVK--------------AAGAKAVAFQAD 69 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHC--CCcEEEEecCCccchHHHHHHHHHHH--------------HhCCcEEEEecC
Confidence 46899999999999999999999998 666566665432 2211222221111 112468889999
Q ss_pred cCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEE
Q psy7542 138 VAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVY 202 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~ 202 (762)
+++++ ++++++ ..+|+|||+|+.... .+.++..+++|+.|+..+++.+... ..-.++++
T Consensus 70 ~~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~ 143 (257)
T PRK12744 70 LTTAA------AVEKLFDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred cCCHH------HHHHHHHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEE
Confidence 99875 454443 368999999997421 1345678999999999999988642 22245666
Q ss_pred E-eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 203 V-STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 203 v-SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
+ ||..+.. . | ....|+.||+..|.+++.++.. |+++
T Consensus 144 ~~ss~~~~~-~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v 184 (257)
T PRK12744 144 LVTSLLGAF-T----------P----------------------------FYSAYAGSKAPVEHFTRAASKEFGARGISV 184 (257)
T ss_pred Eecchhccc-C----------C----------------------------CcccchhhHHHHHHHHHHHHHHhCcCceEE
Confidence 6 3432211 0 0 0157999999999999988763 7999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
++++||.|.++...+.. .+.... ... ... ...+.....+..++|+|+++..++..... ..+++++
T Consensus 185 ~~v~pg~v~t~~~~~~~-------~~~~~~--~~~-~~~--~~~~~~~~~~~~~~dva~~~~~l~~~~~~---~~g~~~~ 249 (257)
T PRK12744 185 TAVGPGPMDTPFFYPQE-------GAEAVA--YHK-TAA--ALSPFSKTGLTDIEDIVPFIRFLVTDGWW---ITGQTIL 249 (257)
T ss_pred EEEecCccccchhcccc-------ccchhh--ccc-ccc--cccccccCCCCCHHHHHHHHHHhhcccce---eecceEe
Confidence 99999998765432211 111000 000 000 01111123578899999999998874211 1367888
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 250 ~~gg 253 (257)
T PRK12744 250 INGG 253 (257)
T ss_pred ecCC
Confidence 8876
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-13 Score=141.84 Aligned_cols=214 Identities=10% Similarity=0.056 Sum_probs=145.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|++|||||||+||++++++|++. +.+|+++.|.... . . ...++.++.+|+
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~--g~~v~~~~r~~~~--------~----------------~-~~~~~~~~~~D~ 56 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAA--GATVVVCGRRAPE--------T----------------V-DGRPAEFHAADV 56 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCChhh--------h----------------h-cCCceEEEEccC
Confidence 47899999999999999999999998 6788999886421 0 0 124678899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc----CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM----IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~----~~lk~f 200 (762)
++++ ++.+++ ..+|+|||+|+.... .+.++..+++|+.|+..+++.+... .+..+|
T Consensus 57 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~i 130 (252)
T PRK07856 57 RDPD------QVAALVDAIVERHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSI 130 (252)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEE
Confidence 9865 454444 356999999986432 1345678999999999999988641 123589
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---CCCE
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---GMPC 277 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---glpv 277 (762)
|++||..+.... | ..+.|+.||+..|.+++..+.. .+.+
T Consensus 131 i~isS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~l~~~la~e~~~~i~v 172 (252)
T PRK07856 131 VNIGSVSGRRPS----------P----------------------------GTAAYGAAKAGLLNLTRSLAVEWAPKVRV 172 (252)
T ss_pred EEEcccccCCCC----------C----------------------------CCchhHHHHHHHHHHHHHHHHHhcCCeEE
Confidence 999998553211 0 0157999999999999888763 4788
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
..++||.|..+.... ..+..........+. ....+...+|+|++++.++..... -..+..+.
T Consensus 173 ~~i~Pg~v~t~~~~~-------~~~~~~~~~~~~~~~---------~~~~~~~p~~va~~~~~L~~~~~~--~i~G~~i~ 234 (252)
T PRK07856 173 NAVVVGLVRTEQSEL-------HYGDAEGIAAVAATV---------PLGRLATPADIAWACLFLASDLAS--YVSGANLE 234 (252)
T ss_pred EEEEeccccChHHhh-------hccCHHHHHHHhhcC---------CCCCCcCHHHHHHHHHHHcCcccC--CccCCEEE
Confidence 899998876543211 011111111111111 112345789999999888764322 12467888
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 235 vdgg 238 (252)
T PRK07856 235 VHGG 238 (252)
T ss_pred ECCC
Confidence 8776
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.5e-13 Score=137.73 Aligned_cols=214 Identities=12% Similarity=0.090 Sum_probs=145.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+++||||+|+||.++++.|++. +.+|+++.|..... ...++..+.+|+
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~--G~~v~~~~r~~~~~--------------------------~~~~~~~~~~D~ 54 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQ--GAQVYGVDKQDKPD--------------------------LSGNFHFLQLDL 54 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHC--CCEEEEEeCCcccc--------------------------cCCcEEEEECCh
Confidence 47899999999999999999999998 67788888864321 124678899999
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccC----c----cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEEeCCc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVR----F----DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVSTAY 207 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~----f----~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vSSay 207 (762)
+++ .++..+....+|+|||+|+... + .+.++..+++|+.|+.++++++... .+..+||++||..
T Consensus 55 ~~~-----~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~ 129 (235)
T PRK06550 55 SDD-----LEPLFDWVPSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIA 129 (235)
T ss_pred HHH-----HHHHHHhhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChh
Confidence 876 2344444567999999998542 1 1345678999999999999988642 1335899999986
Q ss_pred ccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEeee
Q psy7542 208 CHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILRPS 283 (762)
Q Consensus 208 ~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvRPs 283 (762)
+..... ....|+.+|+..+.+++..+. .|+++++++||
T Consensus 130 ~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg 171 (235)
T PRK06550 130 SFVAGG--------------------------------------GGAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPG 171 (235)
T ss_pred hccCCC--------------------------------------CCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeC
Confidence 542210 015799999988887776655 38999999999
Q ss_pred eeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 284 IIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 284 ~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
.|.++.... .| ....+........ ....+...+|+|++++.++...... ..+.++.+.++
T Consensus 172 ~v~t~~~~~--~~-----~~~~~~~~~~~~~---------~~~~~~~~~~~a~~~~~l~s~~~~~--~~g~~~~~~gg 231 (235)
T PRK06550 172 AVKTPMTAA--DF-----EPGGLADWVARET---------PIKRWAEPEEVAELTLFLASGKADY--MQGTIVPIDGG 231 (235)
T ss_pred CccCccccc--cc-----CchHHHHHHhccC---------CcCCCCCHHHHHHHHHHHcChhhcc--CCCcEEEECCc
Confidence 887664321 11 0111111111111 1234678899999999988654321 13567766654
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.6e-13 Score=138.10 Aligned_cols=217 Identities=14% Similarity=0.102 Sum_probs=141.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++||||||||+||+++++.|++. +..|.+..|.. ++++++.. ....++.++.+|+
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~--g~~v~~~~~~~------~~~~~~~~--------------~~~~~~~~~~~D~ 61 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQ--GAIVGLHGTRV------EKLEALAA--------------ELGERVKIFPANL 61 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEcCCH------HHHHHHHH--------------HhCCceEEEEccC
Confidence 36789999999999999999999998 55677766642 22222211 1124688899999
Q ss_pred CCCCCCCCHHHHHhh-------cCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQML-------SETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l-------~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++.+ ++..+ ...+|+|||+|+.... .+.++..+++|+.|+.++++++... .+..+||
T Consensus 62 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv 135 (245)
T PRK12936 62 SDRD------EVKALGQKAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRII 135 (245)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEE
Confidence 9865 44433 3468999999997532 2356678999999999998877531 2457899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... ....|+.+|+..+.+++..+. .++++
T Consensus 136 ~~sS~~~~~~~~--------------------------------------~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v 177 (245)
T PRK12936 136 NITSVVGVTGNP--------------------------------------GQANYCASKAGMIGFSKSLAQEIATRNVTV 177 (245)
T ss_pred EECCHHhCcCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHhhHhCeEE
Confidence 999974432110 014699999977777765544 28999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
++++||.+..+.... . .+. ......+. .....+...+|+++++..++..... ...+++++
T Consensus 178 ~~i~pg~~~t~~~~~-------~-~~~--~~~~~~~~--------~~~~~~~~~~~ia~~~~~l~~~~~~--~~~G~~~~ 237 (245)
T PRK12936 178 NCVAPGFIESAMTGK-------L-NDK--QKEAIMGA--------IPMKRMGTGAEVASAVAYLASSEAA--YVTGQTIH 237 (245)
T ss_pred EEEEECcCcCchhcc-------c-ChH--HHHHHhcC--------CCCCCCcCHHHHHHHHHHHcCcccc--CcCCCEEE
Confidence 999999764432110 0 000 00111111 1122356789999999877654322 12478999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 238 ~~~g 241 (245)
T PRK12936 238 VNGG 241 (245)
T ss_pred ECCC
Confidence 8876
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=142.28 Aligned_cols=204 Identities=15% Similarity=0.095 Sum_probs=132.5
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++|+||||||+||+++++.|++. +.+|+++.|.. ++++.+. ..+++.+.+|++++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~--g~~v~~~~r~~------~~~~~~~-----------------~~~~~~~~~D~~~~ 57 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRR--GYRVLAACRKP------DDVARMN-----------------SLGFTGILLDLDDP 57 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCH------HHhHHHH-----------------hCCCeEEEeecCCH
Confidence 58999999999999999999988 66888888864 2222211 12467889999886
Q ss_pred CCCCCHHHHHhh----cCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHH----HHHHHHcCCccEEEEEeCC
Q psy7542 142 DLGISAEDRQML----SETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDM----LNLSKQMIHLQLFVYVSTA 206 (762)
Q Consensus 142 ~LGLs~~~l~~l----~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~L----LelA~~~~~lk~fV~vSSa 206 (762)
+- + .+.++.+ ...+|.|+|+||.... .+.++..+++|+.|+.++ ++.+++. +.+++|++||.
T Consensus 58 ~~-~-~~~~~~i~~~~~~~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~~~iv~~ss~ 134 (256)
T PRK08017 58 ES-V-ERAADEVIALTDNRLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPH-GEGRIVMTSSV 134 (256)
T ss_pred HH-H-HHHHHHHHHhcCCCCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-CCCEEEEEcCc
Confidence 51 0 0011221 1457999999986432 123557899999998876 4555554 56789999998
Q ss_pred cccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEee
Q psy7542 207 YCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILRP 282 (762)
Q Consensus 207 y~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvRP 282 (762)
++..... ..+.|+.||+..|.+.+..+. .+++++++||
T Consensus 135 ~~~~~~~--------------------------------------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~p 176 (256)
T PRK08017 135 MGLISTP--------------------------------------GRGAYAASKYALEAWSDALRMELRHSGIKVSLIEP 176 (256)
T ss_pred ccccCCC--------------------------------------CccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeC
Confidence 6543211 015799999999998765432 3899999999
Q ss_pred eeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 283 SIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 283 s~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
|.+...... +.... .... .....+....+++++||+|+++..++.+...
T Consensus 177 g~~~t~~~~-------~~~~~--------~~~~-~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~ 225 (256)
T PRK08017 177 GPIRTRFTD-------NVNQT--------QSDK-PVENPGIAARFTLGPEAVVPKLRHALESPKP 225 (256)
T ss_pred CCcccchhh-------cccch--------hhcc-chhhhHHHhhcCCCHHHHHHHHHHHHhCCCC
Confidence 876443211 10000 0000 0111122335679999999999999876554
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=141.14 Aligned_cols=220 Identities=14% Similarity=0.080 Sum_probs=138.4
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++|+||||+|+||++++++|++. +.+|+++.+... ++.++... .+ .....++..+.+|++++
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~--g~~v~~~~~~~~-----~~~~~~~~-----~~------~~~~~~~~~~~~D~~d~ 63 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQE--GYTVAVNYQQNL-----HAAQEVVN-----LI------TQAGGKAFVLQADISDE 63 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCCh-----HHHHHHHH-----HH------HhCCCeEEEEEccCCCH
Confidence 57999999999999999999998 666665433221 11111110 00 11124678899999987
Q ss_pred CCCCCHHHHHhhcC-------CccEEEEcccccCcc--------ccHHHHHHHhHHHHHHHHHHHHHc------CCccEE
Q psy7542 142 DLGISAEDRQMLSE-------TIHIVYHIAATVRFD--------DYMQTYVFLNTRGTRDMLNLSKQM------IHLQLF 200 (762)
Q Consensus 142 ~LGLs~~~l~~l~~-------~vDiViH~AA~v~f~--------~~l~~~~~~NV~GT~~LLelA~~~------~~lk~f 200 (762)
+ +++++++ .+|+|||+|+..... +.++..+++|+.|+..+++.+... .+..+|
T Consensus 64 ~------~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~ 137 (247)
T PRK09730 64 N------QVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAI 137 (247)
T ss_pred H------HHHHHHHHHHHhCCCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 6 4444433 478999999964211 235578999999998888766542 113569
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+.... |. ....|+.+|+..|.+++..+. .+++
T Consensus 138 v~~sS~~~~~~~----------~~---------------------------~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~ 180 (247)
T PRK09730 138 VNVSSAASRLGA----------PG---------------------------EYVDYAASKGAIDTLTTGLSLEVAAQGIR 180 (247)
T ss_pred EEECchhhccCC----------CC---------------------------cccchHhHHHHHHHHHHHHHHHHHHhCeE
Confidence 999997543211 10 013699999999988876553 3899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
++++|||.++++.... .+..........+.. .......+|+|++++.++...... ..+.++
T Consensus 181 v~~i~pg~~~~~~~~~--------~~~~~~~~~~~~~~~---------~~~~~~~~dva~~~~~~~~~~~~~--~~g~~~ 241 (247)
T PRK09730 181 VNCVRPGFIYTEMHAS--------GGEPGRVDRVKSNIP---------MQRGGQPEEVAQAIVWLLSDKASY--VTGSFI 241 (247)
T ss_pred EEEEEeCCCcCccccc--------CCCHHHHHHHHhcCC---------CCCCcCHHHHHHHHHhhcChhhcC--ccCcEE
Confidence 9999999999875321 111112222221111 011237899999999888654221 135677
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 242 ~~~g~ 246 (247)
T PRK09730 242 DLAGG 246 (247)
T ss_pred ecCCC
Confidence 76654
|
|
| >cd09071 FAR_C C-terminal domain of fatty acyl CoA reductases | Back alignment and domain information |
|---|
Probab=99.54 E-value=8e-15 Score=130.63 Aligned_cols=76 Identities=37% Similarity=0.701 Sum_probs=74.0
Q ss_pred cCCCchhhHHHHHHhhhhhhhcccccCceeeecHHHHHHHhhcchhhhhcccccccCCCchHHHHHHHHHHHHhhccc
Q psy7542 399 RGYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMMNEKEAIRYEIAMFRDLDEAKAYFEMCIHGARQYLL 476 (762)
Q Consensus 399 lG~kP~l~~l~~ki~~~~~~l~~f~~~~w~Fd~~n~~~L~~~ls~~Dr~~F~fD~~~~id~W~~Y~~~~~~Girkyll 476 (762)
.|.+|++.++++++.+..+.++||+.++|.|+++|+++|.+.|+++||+.|+||+ +.+| |++|+++|+.|+|+|++
T Consensus 17 ~g~~~~~~~~~~k~~~~~~~~~~Ft~~~w~F~~~n~~~L~~~l~~~Dr~~F~fD~-~~id-W~~Y~~~~~~G~r~yll 92 (92)
T cd09071 17 LGRKPRLLKLYRKIHKLLDLLEYFTTNEWRFDNDNTRALWERLSEEDRELFNFDI-RSID-WDDYFENYIPGLRKYLL 92 (92)
T ss_pred hCCChHHHHHHHHHHHHHHHhhccccCeEEeeCcHHHHHHHHCCHHHHHhCCCCC-CCCC-HHHHHHHHHHHHHHHhC
Confidence 5889999999999999999999999999999999999999999999999999999 9999 99999999999999975
|
C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear. |
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-13 Score=141.23 Aligned_cols=220 Identities=12% Similarity=0.117 Sum_probs=144.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|.... ..++..+.+|+
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~--G~~Vi~~~r~~~~----------------------------~~~~~~~~~D~ 53 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEE--GSNVINFDIKEPS----------------------------YNDVDYFKVDV 53 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCccc----------------------------cCceEEEEccC
Confidence 47899999999999999999999998 6788999886432 13578899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ ++++++ ..+|+|||+||.... .+.++..+++|+.|+..+++++... .+..++|
T Consensus 54 ~~~~------~i~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv 127 (258)
T PRK06398 54 SNKE------QVIKGIDYVISKYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVII 127 (258)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEE
Confidence 9875 444433 368999999997432 2346677999999999998887542 2447899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---CCCEE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---GMPCM 278 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---glpv~ 278 (762)
++||..+..... ....|+.||+..|.+.+..+.. ++.+.
T Consensus 128 ~isS~~~~~~~~--------------------------------------~~~~Y~~sKaal~~~~~~la~e~~~~i~vn 169 (258)
T PRK06398 128 NIASVQSFAVTR--------------------------------------NAAAYVTSKHAVLGLTRSIAVDYAPTIRCV 169 (258)
T ss_pred EeCcchhccCCC--------------------------------------CCchhhhhHHHHHHHHHHHHHHhCCCCEEE
Confidence 999975432110 0157999999999999888763 48899
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
.++||.|-.+......++..+ ..+....... .. .........+...+|+|++++.++..... ...+.++.+
T Consensus 170 ~i~PG~v~T~~~~~~~~~~~~-~~~~~~~~~~-~~-----~~~~~~~~~~~~p~eva~~~~~l~s~~~~--~~~G~~i~~ 240 (258)
T PRK06398 170 AVCPGSIRTPLLEWAAELEVG-KDPEHVERKI-RE-----WGEMHPMKRVGKPEEVAYVVAFLASDLAS--FITGECVTV 240 (258)
T ss_pred EEecCCccchHHhhhhhcccc-CChhhhHHHH-Hh-----hhhcCCcCCCcCHHHHHHHHHHHcCcccC--CCCCcEEEE
Confidence 999997755432111000000 0011110000 00 00011122456789999999888764332 114667777
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.++
T Consensus 241 dgg 243 (258)
T PRK06398 241 DGG 243 (258)
T ss_pred CCc
Confidence 665
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-13 Score=142.09 Aligned_cols=227 Identities=14% Similarity=0.112 Sum_probs=142.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+++||||+|+||.+++++|++. +.+|.+..+... +.+++.. ..+. ....++..+.+|+
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~--G~~v~~~~~~~~-----~~~~~~~-----~~~~------~~~~~~~~~~~D~ 63 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLAND--GALVAIHYGNRK-----EEAEETV-----YEIQ------SNGGSAFSIGANL 63 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHC--CCeEEEEcCCCH-----HHHHHHH-----HHHH------hcCCceEEEeccc
Confidence 46899999999999999999999998 666666654321 1111111 0111 1124567888999
Q ss_pred CCCCCCCCHHHHHhhc---------CCccEEEEcccccCc---c----ccHHHHHHHhHHHHHHHHHHHHHc-CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS---------ETIHIVYHIAATVRF---D----DYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~---------~~vDiViH~AA~v~f---~----~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV 201 (762)
++.+- + ....+.+. ..+|++||+||.... . +.++..+++|+.|+..+++++... ..-.++|
T Consensus 64 ~~~~~-~-~~~~~~~~~~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv 141 (252)
T PRK12747 64 ESLHG-V-EALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRII 141 (252)
T ss_pred CCHHH-H-HHHHHHHHHHhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEE
Confidence 88641 1 00111111 268999999996421 1 235678899999999999877652 2235899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... . ...|+.||+..+.+++..+. .|+++
T Consensus 142 ~isS~~~~~~~~----------~----------------------------~~~Y~~sKaa~~~~~~~la~e~~~~girv 183 (252)
T PRK12747 142 NISSAATRISLP----------D----------------------------FIAYSMTKGAINTMTFTLAKQLGARGITV 183 (252)
T ss_pred EECCcccccCCC----------C----------------------------chhHHHHHHHHHHHHHHHHHHHhHcCCEE
Confidence 999986532210 0 15799999999998887655 28999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
..+.||.|.++.... .. ............ .....+..++|+|+++..++..... ...+.++.
T Consensus 184 n~v~Pg~v~t~~~~~-------~~-~~~~~~~~~~~~--------~~~~~~~~~~dva~~~~~l~s~~~~--~~~G~~i~ 245 (252)
T PRK12747 184 NAILPGFIKTDMNAE-------LL-SDPMMKQYATTI--------SAFNRLGEVEDIADTAAFLASPDSR--WVTGQLID 245 (252)
T ss_pred EEEecCCccCchhhh-------cc-cCHHHHHHHHhc--------CcccCCCCHHHHHHHHHHHcCcccc--CcCCcEEE
Confidence 999999887664221 00 001111111100 0113467899999999888754322 11466777
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 246 vdgg 249 (252)
T PRK12747 246 VSGG 249 (252)
T ss_pred ecCC
Confidence 7654
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.2e-13 Score=139.18 Aligned_cols=219 Identities=11% Similarity=0.142 Sum_probs=143.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|+||||+|+||++++++|++. +.+|++..|... ++++++. .....++.++.+|+
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~--G~~vv~~~~~~~-----~~~~~~~--------------~~~~~~~~~~~~D~ 61 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFARE--GARVVVNYHQSE-----DAAEALA--------------DELGDRAIALQADV 61 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHC--CCeEEEEcCCCH-----HHHHHHH--------------HHhCCceEEEEcCC
Confidence 36789999999999999999999998 566776655432 1222211 11124788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------C-ccEEEEcccccC---------c----cccHHHHHHHhHHHHHHHHHHHHHc---
Q psy7542 139 AVPDLGISAEDRQMLSE-------T-IHIVYHIAATVR---------F----DDYMQTYVFLNTRGTRDMLNLSKQM--- 194 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~-vDiViH~AA~v~---------f----~~~l~~~~~~NV~GT~~LLelA~~~--- 194 (762)
++++ ++..+++ . +|+|||+|+... + .+.+...+++|+.|+..+++++...
T Consensus 62 ~~~~------~~~~~~~~~~~~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ 135 (253)
T PRK08642 62 TDRE------QVQAMFATATEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMRE 135 (253)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHh
Confidence 9865 4444433 3 899999997521 1 1234567999999999999998631
Q ss_pred CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-
Q psy7542 195 IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA- 273 (762)
Q Consensus 195 ~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~- 273 (762)
.+..++|++||....... .| .+.|+.||+..|.+++..+..
T Consensus 136 ~~~g~iv~iss~~~~~~~---------~~-----------------------------~~~Y~~sK~a~~~l~~~la~~~ 177 (253)
T PRK08642 136 QGFGRIINIGTNLFQNPV---------VP-----------------------------YHDYTTAKAALLGLTRNLAAEL 177 (253)
T ss_pred cCCeEEEEECCccccCCC---------CC-----------------------------ccchHHHHHHHHHHHHHHHHHh
Confidence 234689999986432110 01 157999999999999998763
Q ss_pred ---CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCC
Q psy7542 274 ---GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPG 350 (762)
Q Consensus 274 ---glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~ 350 (762)
|+.+..++||.|-.+... + ..+......... .. ....+...+|++++++.++..... .
T Consensus 178 ~~~~i~v~~i~pG~v~t~~~~---~-----~~~~~~~~~~~~-~~--------~~~~~~~~~~va~~~~~l~~~~~~--~ 238 (253)
T PRK08642 178 GPYGITVNMVSGGLLRTTDAS---A-----ATPDEVFDLIAA-TT--------PLRKVTTPQEFADAVLFFASPWAR--A 238 (253)
T ss_pred CccCeEEEEEeecccCCchhh---c-----cCCHHHHHHHHh-cC--------CcCCCCCHHHHHHHHHHHcCchhc--C
Confidence 799999999987544211 0 011111111111 11 113478999999999998875432 1
Q ss_pred CCceEEEecCC
Q psy7542 351 NTMRVINLTAN 361 (762)
Q Consensus 351 ~~~~iyNi~s~ 361 (762)
..+.++.+.++
T Consensus 239 ~~G~~~~vdgg 249 (253)
T PRK08642 239 VTGQNLVVDGG 249 (253)
T ss_pred ccCCEEEeCCC
Confidence 24677777665
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=146.65 Aligned_cols=159 Identities=17% Similarity=0.210 Sum_probs=116.5
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+++|+||||||+||++++++|++. +.+|+++.|... .++++. ..+++.+.+|++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~--G~~Vi~~~r~~~------~~~~l~-----------------~~~~~~~~~Dl~ 57 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSD--GWRVFATCRKEE------DVAALE-----------------AEGLEAFQLDYA 57 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHH------HHHHHH-----------------HCCceEEEccCC
Confidence 3679999999999999999999988 778899998642 222221 125778999999
Q ss_pred CCCCCCCHHHHHhhc--------CCccEEEEcccccCcc-------ccHHHHHHHhHHH----HHHHHHHHHHcCCccEE
Q psy7542 140 VPDLGISAEDRQMLS--------ETIHIVYHIAATVRFD-------DYMQTYVFLNTRG----TRDMLNLSKQMIHLQLF 200 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~--------~~vDiViH~AA~v~f~-------~~l~~~~~~NV~G----T~~LLelA~~~~~lk~f 200 (762)
+++ +++.++ ..+|+|||+|+..... +.++..+++|+.| ++.+++.+++. +..++
T Consensus 58 d~~------~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~-~~g~i 130 (277)
T PRK05993 58 EPE------SIAALVAQVLELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQ-GQGRI 130 (277)
T ss_pred CHH------HHHHHHHHHHHHcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhc-CCCEE
Confidence 865 333332 3589999999865321 3456689999999 55666666664 56799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||.++..... ....|+.||+..|.+++..+. .|++
T Consensus 131 v~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~l~~el~~~gi~ 172 (277)
T PRK05993 131 VQCSSILGLVPMK--------------------------------------YRGAYNASKFAIEGLSLTLRMELQGSGIH 172 (277)
T ss_pred EEECChhhcCCCC--------------------------------------ccchHHHHHHHHHHHHHHHHHHhhhhCCE
Confidence 9999986543210 015799999999999877653 2899
Q ss_pred EEEEeeeeeccC
Q psy7542 277 CMILRPSIIIPI 288 (762)
Q Consensus 277 v~IvRPs~V~G~ 288 (762)
+++++||.|-.+
T Consensus 173 v~~v~Pg~v~T~ 184 (277)
T PRK05993 173 VSLIEPGPIETR 184 (277)
T ss_pred EEEEecCCccCc
Confidence 999999988654
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.1e-13 Score=138.42 Aligned_cols=220 Identities=18% Similarity=0.163 Sum_probs=144.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEE-eCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYIL-LRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~L-vR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+.+++||||||||+||+++++.|++. +.+|+++ .|.... .+.+.+.+ .....++.++.+|
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~--g~~v~~~~~r~~~~---~~~~~~~~--------------~~~~~~~~~~~~D 63 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKE--GAKVVIAYDINEEA---AQELLEEI--------------KEEGGDAIAVKAD 63 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEcCCCHHH---HHHHHHHH--------------HhcCCeEEEEECC
Confidence 46789999999999999999999988 6777777 775321 11111111 1113468899999
Q ss_pred cCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 138 VAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
+++++ ++..+++ .+|+|||+|+.... .+.++..+++|+.|+.++++.+... .+.++|
T Consensus 64 ~~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~ 137 (247)
T PRK05565 64 VSSEE------DVENLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVI 137 (247)
T ss_pred CCCHH------HHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEE
Confidence 99876 4444433 79999999997632 1345678999999999988887642 235679
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... . ...|+.+|+..+.+++..+. .|++
T Consensus 138 v~~sS~~~~~~~~----------~----------------------------~~~y~~sK~a~~~~~~~~~~~~~~~gi~ 179 (247)
T PRK05565 138 VNISSIWGLIGAS----------C----------------------------EVLYSASKGAVNAFTKALAKELAPSGIR 179 (247)
T ss_pred EEECCHhhccCCC----------C----------------------------ccHHHHHHHHHHHHHHHHHHHHHHcCeE
Confidence 9999975432110 0 04699999887777666554 3899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
++++|||.+..+..... .+. ....... ......+...+|++++++.++...... ..++++
T Consensus 180 ~~~v~pg~v~t~~~~~~--------~~~-~~~~~~~---------~~~~~~~~~~~~va~~~~~l~~~~~~~--~~g~~~ 239 (247)
T PRK05565 180 VNAVAPGAIDTEMWSSF--------SEE-DKEGLAE---------EIPLGRLGKPEEIAKVVLFLASDDASY--ITGQII 239 (247)
T ss_pred EEEEEECCccCcccccc--------ChH-HHHHHHh---------cCCCCCCCCHHHHHHHHHHHcCCccCC--ccCcEE
Confidence 99999998865432211 011 1111111 011234668899999999988654331 246788
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++..+
T Consensus 240 ~~~~~ 244 (247)
T PRK05565 240 TVDGG 244 (247)
T ss_pred EecCC
Confidence 87765
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-13 Score=142.23 Aligned_cols=203 Identities=12% Similarity=0.084 Sum_probs=133.4
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|+||||||+||++++++|++. +.+|++..|... +++++. ..++ ....++.++.+|++++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~--g~~V~~~~r~~~------~~~~~~-----~~l~------~~~~~~~~~~~D~~~~ 61 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWARE--GWRLALADVNEE------GGEETL-----KLLR------EAGGDGFYQRCDVRDY 61 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHH-----HHHH------hcCCceEEEEccCCCH
Confidence 57999999999999999999998 678888888642 222211 1111 1135688899999986
Q ss_pred CCCCCHHHHHhhc-------CCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHH----HHcCCccEEEEE
Q psy7542 142 DLGISAEDRQMLS-------ETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLS----KQMIHLQLFVYV 203 (762)
Q Consensus 142 ~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA----~~~~~lk~fV~v 203 (762)
+ ++..++ ..+|+|||+|+..... +.++..+++|+.|+..+.+.+ ++. +..++|++
T Consensus 62 ~------~~~~~~~~i~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~v 134 (270)
T PRK05650 62 S------QLTALAQACEEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQ-KSGRIVNI 134 (270)
T ss_pred H------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhC-CCCEEEEE
Confidence 5 444433 3689999999976421 345567889998888766654 443 56789999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~I 279 (762)
||..+..... . ...|+.||+..+.+.+.++. .|+.+++
T Consensus 135 sS~~~~~~~~----------~----------------------------~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~ 176 (270)
T PRK05650 135 ASMAGLMQGP----------A----------------------------MSSYNVAKAGVVALSETLLVELADDEIGVHV 176 (270)
T ss_pred CChhhcCCCC----------C----------------------------chHHHHHHHHHHHHHHHHHHHhcccCcEEEE
Confidence 9986543211 0 15799999987666655554 3899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhc
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWN 344 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~ 344 (762)
++||.+.++......+ ..+. ......+. .....++++|+|++++.++.+
T Consensus 177 v~Pg~v~t~~~~~~~~-----~~~~--~~~~~~~~---------~~~~~~~~~~vA~~i~~~l~~ 225 (270)
T PRK05650 177 VCPSFFQTNLLDSFRG-----PNPA--MKAQVGKL---------LEKSPITAADIADYIYQQVAK 225 (270)
T ss_pred EecCccccCccccccc-----Cchh--HHHHHHHH---------hhcCCCCHHHHHHHHHHHHhC
Confidence 9999887654322111 0010 00000000 012357899999999999874
|
|
| >cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27 | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-14 Score=129.71 Aligned_cols=96 Identities=27% Similarity=0.399 Sum_probs=78.3
Q ss_pred ccccceee-ecCCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhch
Q psy7542 522 ISVSGYRL-IECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCK 600 (762)
Q Consensus 522 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (762)
|+++.+.. .+.+++|+||.|+|. ..|.|.+|||||..||+ ++++.++
T Consensus 6 i~Ip~~~~~~~~~~~yvvY~I~~~---~~~~v~rRyseF~~L~~-----------------------------~L~~~~~ 53 (106)
T cd06886 6 ISIPDYKHVEQNGEKFVVYNIYMA---GRQLCSRRYREFANLHQ-----------------------------NLKKEFP 53 (106)
T ss_pred EecCCcceEcCCCCcEEEEEEEEc---CCEEEEechHHHHHHHH-----------------------------HHHHHcC
Confidence 44444432 334689999999885 37999999999999998 6666553
Q ss_pred hhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHHhcCCCh
Q psy7542 601 YFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGPSR 680 (762)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (762)
. ...|.||+|++.+++++++|+||.+||.||+.+++...-+
T Consensus 54 ~---------------------------------------~~~p~lP~K~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~ 94 (106)
T cd06886 54 D---------------------------------------FQFPKLPGKWPFSLSEQQLDARRRGLEQYLEKVCSIRVIG 94 (106)
T ss_pred C---------------------------------------CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 2 2679999999988999999999999999999999988777
Q ss_pred --HHHHhhhC
Q psy7542 681 --NQVLAFLG 688 (762)
Q Consensus 681 --~~~~~~~~ 688 (762)
..+.+||.
T Consensus 95 ~s~~~~~FL~ 104 (106)
T cd06886 95 ESDIMQDFLS 104 (106)
T ss_pred cCHHHHHHhc
Confidence 88889984
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface |
| >cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25 | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.1e-14 Score=133.63 Aligned_cols=107 Identities=24% Similarity=0.346 Sum_probs=81.4
Q ss_pred CCCCccccccceeeecCCCCeEEEEEEEEEcCe----------EEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCch
Q psy7542 516 GPKENCISVSGYRLIECEKPYYVYVIHVRMFQQ----------HYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYS 585 (762)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (762)
|...++|+.... ..+.++.|+||.|.|...+. .|.|.||||||+.||.
T Consensus 7 ~~w~~~I~~~~~-~~~~~~~~~vY~I~V~~~~~~~~~~~~~~~~W~V~RRYsdF~~Lh~--------------------- 64 (127)
T cd06878 7 GKWRANIQSAEV-TVEDDKEVPLYVIVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHR--------------------- 64 (127)
T ss_pred CcceEEEeeeEE-EcCCCeEEEEEEEEEEEecCCCCCCCCCcceEEEEEeHHHHHHHHH---------------------
Confidence 334444444433 24567899999999998653 4999999999999998
Q ss_pred hhhhhhHHHHhhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCChhHHHHHHHH
Q psy7542 586 RTLKQNRRQKKRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQPKVLDERRHL 665 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (762)
++|..++. -.....|.+|+|.+.+.+++++|+||.+
T Consensus 65 --------~Lk~~~~~------------------------------------~~~~~lP~ppKk~~~~~~~~fle~Rr~~ 100 (127)
T cd06878 65 --------KLKECSSW------------------------------------LKKVELPSLSKKWFKSIDKKFLDKSKNQ 100 (127)
T ss_pred --------HHHHHCCC------------------------------------ccccCCCCCCccccccCCHHHHHHHHHH
Confidence 66665532 0113566677777899999999999999
Q ss_pred HHHHHHHHHhcCCCh--HHHHhhhC
Q psy7542 666 LEIYLKEMFKFGPSR--NQVLAFLG 688 (762)
Q Consensus 666 ~~~~~~~~~~~~~~~--~~~~~~~~ 688 (762)
||.|||.+++....+ ..|.+||.
T Consensus 101 Le~YLq~ll~~~~l~~s~~l~~FLs 125 (127)
T cd06878 101 LQKYLQFILEDETLCQSEALYSFLS 125 (127)
T ss_pred HHHHHHHHhCChhhcCCHHHHHHcC
Confidence 999999999876555 88999984
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S |
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.1e-13 Score=138.02 Aligned_cols=222 Identities=11% Similarity=0.054 Sum_probs=147.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+|+||||+|+||+.++++|++. +.+|+++.|... .++++. ..++ ....++.++.+|+
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~--G~~v~~~~r~~~------~~~~~~-----~~~~------~~~~~~~~~~~Dl 69 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGA--GAHVLVNGRNAA------TLEAAV-----AALR------AAGGAAEALAFDI 69 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHc--CCeEEEEeCCHH------HHHHHH-----HHHH------hcCCceEEEEccC
Confidence 47899999999999999999999988 778999998642 122211 0111 1124688999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH-c--CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ-M--IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~-~--~~lk~fV 201 (762)
++++ ++..++ ..+|+|||+|+.... .+.++..+++|+.|+..+.+.+.. + .+..+||
T Consensus 70 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv 143 (256)
T PRK06124 70 ADEE------AVAAAFARIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRII 143 (256)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9865 444433 357999999997532 134566899999999999977754 1 2457899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+.... | ....|+.+|+..+.+++..+. .++.+
T Consensus 144 ~~ss~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v 185 (256)
T PRK06124 144 AITSIAGQVAR----------A----------------------------GDAVYPAAKQGLTGLMRALAAEFGPHGITS 185 (256)
T ss_pred EEeechhccCC----------C----------------------------CccHhHHHHHHHHHHHHHHHHHHHHhCcEE
Confidence 99998653211 0 015799999999988877654 28999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
..++||.|.++...+ + ..+..+........ ....+++++|++.+++.++...... ..++.+.
T Consensus 186 ~~i~pg~v~t~~~~~---~----~~~~~~~~~~~~~~---------~~~~~~~~~~~a~~~~~l~~~~~~~--~~G~~i~ 247 (256)
T PRK06124 186 NAIAPGYFATETNAA---M----AADPAVGPWLAQRT---------PLGRWGRPEEIAGAAVFLASPAASY--VNGHVLA 247 (256)
T ss_pred EEEEECCccCcchhh---h----ccChHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHcCcccCC--cCCCEEE
Confidence 999999887764221 0 00111111111110 1124789999999999988765321 1355666
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 248 ~dgg 251 (256)
T PRK06124 248 VDGG 251 (256)
T ss_pred ECCC
Confidence 6544
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.1e-13 Score=137.02 Aligned_cols=217 Identities=16% Similarity=0.137 Sum_probs=144.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++++++|||||+|+||..+++.|++. +.+|+++.|... ++++..+ .+ .....++..+.+|+
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~--G~~vi~~~r~~~------~~~~~~~-----~~------~~~~~~~~~~~~D~ 63 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQK--GAKLALIDLNQE------KLEEAVA-----EC------GALGTEVRGYAANV 63 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH-----HH------HhcCCceEEEEcCC
Confidence 46899999999999999999999998 668888888642 2222111 01 11135688899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc----------------cccHHHHHHHhHHHHHHHHHHHHH--
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF----------------DDYMQTYVFLNTRGTRDMLNLSKQ-- 193 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f----------------~~~l~~~~~~NV~GT~~LLelA~~-- 193 (762)
++++ ++++++ ..+|+|||+|+.... .+.+...+++|+.|+..+++.+..
T Consensus 64 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l 137 (253)
T PRK08217 64 TDEE------DVEATFAQIAEDFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKM 137 (253)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9865 333222 357999999985321 133456788999999887765542
Q ss_pred --cCCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHH
Q psy7542 194 --MIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYM 271 (762)
Q Consensus 194 --~~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~ 271 (762)
...-..+|++||....+.. ....|+.||+..|.+++..+
T Consensus 138 ~~~~~~~~iv~~ss~~~~~~~---------------------------------------~~~~Y~~sK~a~~~l~~~la 178 (253)
T PRK08217 138 IESGSKGVIINISSIARAGNM---------------------------------------GQTNYSASKAGVAAMTVTWA 178 (253)
T ss_pred HhcCCCeEEEEEccccccCCC---------------------------------------CCchhHHHHHHHHHHHHHHH
Confidence 1122468999887432210 01579999999999988776
Q ss_pred H----cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 272 E----AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 272 ~----~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
. .+++++.++||.|.++..... ..........+. ....+.+++|+|+++..++.....
T Consensus 179 ~~~~~~~i~v~~v~pg~v~t~~~~~~---------~~~~~~~~~~~~---------~~~~~~~~~~~a~~~~~l~~~~~~ 240 (253)
T PRK08217 179 KELARYGIRVAAIAPGVIETEMTAAM---------KPEALERLEKMI---------PVGRLGEPEEIAHTVRFIIENDYV 240 (253)
T ss_pred HHHHHcCcEEEEEeeCCCcCcccccc---------CHHHHHHHHhcC---------CcCCCcCHHHHHHHHHHHHcCCCc
Confidence 4 289999999999876643211 111222221111 123467899999999998865332
Q ss_pred CCCCCceEEEecCC
Q psy7542 348 NPGNTMRVINLTAN 361 (762)
Q Consensus 348 ~~~~~~~iyNi~s~ 361 (762)
.+++++++++
T Consensus 241 ----~g~~~~~~gg 250 (253)
T PRK08217 241 ----TGRVLEIDGG 250 (253)
T ss_pred ----CCcEEEeCCC
Confidence 4789999876
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.3e-13 Score=140.35 Aligned_cols=228 Identities=16% Similarity=0.122 Sum_probs=146.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.+++++||||+|+||++++++|++. +.+|+++.|... ..+..+++. ....++..+.+|+
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~--G~~Vv~~~r~~~---~~~~~~~~~---------------~~~~~~~~~~~Dl 63 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARH--GANLILLDISPE---IEKLADELC---------------GRGHRCTAVVADV 63 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEecCCHH---HHHHHHHHH---------------HhCCceEEEECCC
Confidence 46899999999999999999999998 678888888642 111111111 0124678899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++.++ ..+|+|||+|+..... +.++..+++|+.|+..+++.+... .+..++|
T Consensus 64 ~~~~------~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv 137 (263)
T PRK08226 64 RDPA------SVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIV 137 (263)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9865 444443 3589999999975321 234557899999999999887642 2346899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+.... .+. ...|+.+|+..|.+++.++.. ++.+
T Consensus 138 ~isS~~~~~~~---------~~~----------------------------~~~Y~~sK~a~~~~~~~la~~~~~~~i~v 180 (263)
T PRK08226 138 MMSSVTGDMVA---------DPG----------------------------ETAYALTKAAIVGLTKSLAVEYAQSGIRV 180 (263)
T ss_pred EECcHHhcccC---------CCC----------------------------cchHHHHHHHHHHHHHHHHHHhcccCcEE
Confidence 99997542110 000 147999999999988877652 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
+.++||.|.++....+.++. +...+..++..+..+. ....+.+.+|+|++++.++...... ..++++-
T Consensus 181 ~~i~pg~v~t~~~~~~~~~~-~~~~~~~~~~~~~~~~---------p~~~~~~~~~va~~~~~l~~~~~~~--~~g~~i~ 248 (263)
T PRK08226 181 NAICPGYVRTPMAESIARQS-NPEDPESVLTEMAKAI---------PLRRLADPLEVGELAAFLASDESSY--LTGTQNV 248 (263)
T ss_pred EEEecCcccCHHHHhhhhhc-cCCCcHHHHHHHhccC---------CCCCCCCHHHHHHHHHHHcCchhcC--CcCceEe
Confidence 99999988776432211110 0001111222222211 1123568899999988877543221 1355665
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 249 ~dgg 252 (263)
T PRK08226 249 IDGG 252 (263)
T ss_pred ECCC
Confidence 6554
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.7e-13 Score=138.39 Aligned_cols=224 Identities=13% Similarity=0.065 Sum_probs=145.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|++|||||+|+||++++++|++. +.+|+++.|.... ..+.+.+. + .....++..+.+|+
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~--G~~v~~~~r~~~~--~~~~~~~~--------l------~~~~~~~~~~~~D~ 67 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQA--GADVALFDLRTDD--GLAETAEH--------I------EAAGRRAIQIAADV 67 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCcch--HHHHHHHH--------H------HhcCCceEEEEcCC
Confidence 47899999999999999999999998 6788999886432 11111111 1 11124678899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ ++.+++ ..+|+|||+|+.... .+.++..+++|+.|+..+++.+... .+..++|
T Consensus 68 ~~~~------~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv 141 (254)
T PRK06114 68 TSKA------DLRAAVARTEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIV 141 (254)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEE
Confidence 9876 344333 357999999997542 2346678999999998887776431 2346899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+...... + ....|+.+|+..+.+++..+. .|+++
T Consensus 142 ~isS~~~~~~~~~--------~----------------------------~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v 185 (254)
T PRK06114 142 NIASMSGIIVNRG--------L----------------------------LQAHYNASKAGVIHLSKSLAMEWVGRGIRV 185 (254)
T ss_pred EECchhhcCCCCC--------C----------------------------CcchHHHHHHHHHHHHHHHHHHHhhcCeEE
Confidence 9999754322110 0 014799999998888877765 28999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
.+++||.|.++.... +. ............ ...-+..++|++++++.++..... ...++++.
T Consensus 186 ~~v~PG~i~t~~~~~-~~-------~~~~~~~~~~~~---------p~~r~~~~~dva~~~~~l~s~~~~--~~tG~~i~ 246 (254)
T PRK06114 186 NSISPGYTATPMNTR-PE-------MVHQTKLFEEQT---------PMQRMAKVDEMVGPAVFLLSDAAS--FCTGVDLL 246 (254)
T ss_pred EEEeecCccCccccc-cc-------chHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCcccc--CcCCceEE
Confidence 999999886653210 00 001111111100 012356789999999988764332 12466777
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 247 ~dgg 250 (254)
T PRK06114 247 VDGG 250 (254)
T ss_pred ECcC
Confidence 7655
|
|
| >cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-14 Score=132.44 Aligned_cols=89 Identities=28% Similarity=0.454 Sum_probs=71.9
Q ss_pred CccccccceeeecCCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhh
Q psy7542 519 ENCISVSGYRLIECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRN 598 (762)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (762)
++|||....+- +..+.|+||.|+|...+..|.|.+|||||..||+ ++++.
T Consensus 2 ~v~IPs~~~~g-~~~~~y~vY~I~v~~~~~~w~V~RRYseF~~L~~-----------------------------~L~~~ 51 (118)
T cd07277 2 NVWIPSVFLRG-KGSDAHHVYQVYIRIRDDEWNVYRRYSEFYELHK-----------------------------KLKKK 51 (118)
T ss_pred EEEcCcEEEec-CCCCCEEEEEEEEEECCCEEEEEecHHHHHHHHH-----------------------------HHHHH
Confidence 34555433222 2358999999999999999999999999999998 66666
Q ss_pred chhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCc-CCCCChhHHHHHHHHHHHHHHHHHhc
Q psy7542 599 CKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKK-IRSNQPKVLDERRHLLEIYLKEMFKF 676 (762)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (762)
+.. ...|+||||+ +.+.+++++|+||.+||.||+.++..
T Consensus 52 ~~~---------------------------------------~~~~~~P~Kk~~g~~~~~~ie~Rr~~Le~yL~~ll~~ 91 (118)
T cd07277 52 FPV---------------------------------------VRSFDFPPKKAIGNKDAKFVEERRKRLQVYLRRVVNT 91 (118)
T ss_pred CCC---------------------------------------CCCCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 632 2567899998 57888999999999999999999864
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways. |
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=137.21 Aligned_cols=222 Identities=17% Similarity=0.137 Sum_probs=144.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++||||||+|+||.+++++|++. +.+|+++.|.... .+.+.+. +. ....++..+.+|+
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~--G~~Vi~~~r~~~~---~~~~~~~--------~~------~~~~~~~~~~~D~ 66 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQ--GAHVIVSSRKLDG---CQAVADA--------IV------AAGGKAEALACHI 66 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHH---HHHHHHH--------HH------hcCCeEEEEEcCC
Confidence 46899999999999999999999998 6688999885321 1122111 11 1124577889999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-----c---ccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-----D---DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-----~---~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
++.+ +++.++ ..+|+|||+|+.... + +.++..+++|+.|+..+++++... .+..++
T Consensus 67 ~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~i 140 (252)
T PRK07035 67 GEME------QIDALFAHIRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSI 140 (252)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEE
Confidence 9865 343332 358999999985421 1 335568999999998888776432 245789
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
+++||.++..... + -..|+.||+..|.+++.++.. |++
T Consensus 141 v~~sS~~~~~~~~---------~-----------------------------~~~Y~~sK~al~~~~~~l~~e~~~~gi~ 182 (252)
T PRK07035 141 VNVASVNGVSPGD---------F-----------------------------QGIYSITKAAVISMTKAFAKECAPFGIR 182 (252)
T ss_pred EEECchhhcCCCC---------C-----------------------------CcchHHHHHHHHHHHHHHHHHHhhcCEE
Confidence 9999975532110 0 157999999999999887652 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
++.+.||.|..+.... ............... ....+...+|+|++++.++...... ..+.++
T Consensus 183 v~~i~PG~v~t~~~~~-------~~~~~~~~~~~~~~~---------~~~~~~~~~~va~~~~~l~~~~~~~--~~g~~~ 244 (252)
T PRK07035 183 VNALLPGLTDTKFASA-------LFKNDAILKQALAHI---------PLRRHAEPSEMAGAVLYLASDASSY--TTGECL 244 (252)
T ss_pred EEEEeeccccCccccc-------ccCCHHHHHHHHccC---------CCCCcCCHHHHHHHHHHHhCccccC--ccCCEE
Confidence 9999999885543221 111111111111111 1123567789999999988754331 146677
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+.++
T Consensus 245 ~~dgg 249 (252)
T PRK07035 245 NVDGG 249 (252)
T ss_pred EeCCC
Confidence 77654
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.6e-13 Score=138.23 Aligned_cols=228 Identities=14% Similarity=0.100 Sum_probs=142.6
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|++|||||+|+||.++++.|++. +.+|+++.|.... .+++...+ .....++.++.+|+++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~--G~~v~~~~r~~~~---~~~~~~~~--------------~~~~~~~~~~~~Dl~~ 62 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVED--GFKVAIVDYNEET---AQAAADKL--------------SKDGGKAIAVKADVSD 62 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHH---HHHHHHHH--------------HhcCCeEEEEECCCCC
Confidence 689999999999999999999998 6788999886421 11221111 1112467889999998
Q ss_pred CCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc----CCccEEEE
Q psy7542 141 PDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM----IHLQLFVY 202 (762)
Q Consensus 141 ~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~----~~lk~fV~ 202 (762)
++ ++.+++ .++|+|||+|+.... .+.++..+++|+.|+..+++.+... +.-.++|+
T Consensus 63 ~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~ 136 (256)
T PRK08643 63 RD------QVFAAVRQVVDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIIN 136 (256)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 76 343333 368999999986432 1345678899999998887777542 22357999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~ 278 (762)
+||..+.... |. ...|+.+|+..|.+++..+. .|+.++
T Consensus 137 ~sS~~~~~~~----------~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 178 (256)
T PRK08643 137 ATSQAGVVGN----------PE----------------------------LAVYSSTKFAVRGLTQTAARDLASEGITVN 178 (256)
T ss_pred ECccccccCC----------CC----------------------------CchhHHHHHHHHHHHHHHHHHhcccCcEEE
Confidence 9987432111 00 15799999999888877765 289999
Q ss_pred EEeeeeeccCCCCCCC-CCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 279 ILRPSIIIPIWKDPLP-GWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 279 IvRPs~V~G~~~eP~p-GWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
.++||.|.++...... ...++...+........... + ....+...+++|+++..++...... ..+.++.
T Consensus 179 ~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~va~~~~~L~~~~~~~--~~G~~i~ 248 (256)
T PRK08643 179 AYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAKD---I-----TLGRLSEPEDVANCVSFLAGPDSDY--ITGQTII 248 (256)
T ss_pred EEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhcc---C-----CCCCCcCHHHHHHHHHHHhCccccC--ccCcEEE
Confidence 9999988665321000 00000000111100001100 0 1123567899999998888654321 1467777
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 249 vdgg 252 (256)
T PRK08643 249 VDGG 252 (256)
T ss_pred eCCC
Confidence 7655
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=137.27 Aligned_cols=221 Identities=13% Similarity=0.069 Sum_probs=146.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|+||||+|+||++++++|++. +.+|+++.|.... .+++.+.++ ....++..+.+|+
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~--G~~vv~~~r~~~~---~~~~~~~l~--------------~~~~~~~~~~~D~ 69 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATA--GASVVVSDINADA---ANHVVDEIQ--------------QLGGQAFACRCDI 69 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCHHH---HHHHHHHHH--------------hcCCcEEEEEccC
Confidence 46899999999999999999999998 6778888875321 122211111 1124678889999
Q ss_pred CCCCCCCCHHHHHhh-------cCCccEEEEcccccCc---c---ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEE
Q psy7542 139 AVPDLGISAEDRQML-------SETIHIVYHIAATVRF---D---DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l-------~~~vDiViH~AA~v~f---~---~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~ 202 (762)
++++ ++.++ ...+|+|||+||.... + +.++..+++|+.|+.++++++... .+..++|+
T Consensus 70 ~~~~------~i~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~ 143 (255)
T PRK06113 70 TSEQ------ELSALADFALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILT 143 (255)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEE
Confidence 9865 34333 2458999999997532 2 345567899999999999998631 13358999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~ 278 (762)
+||..+..... ....|+.||+..+.+++..+.. ++.++
T Consensus 144 isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~ 185 (255)
T PRK06113 144 ITSMAAENKNI--------------------------------------NMTSYASSKAAASHLVRNMAFDLGEKNIRVN 185 (255)
T ss_pred EecccccCCCC--------------------------------------CcchhHHHHHHHHHHHHHHHHHhhhhCeEEE
Confidence 99986432110 1157999999999999887652 78999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
++.||.+..+... ....+ .+....... .....+...+|++++++.++..... --.++++++
T Consensus 186 ~v~pg~~~t~~~~-------~~~~~-~~~~~~~~~---------~~~~~~~~~~d~a~~~~~l~~~~~~--~~~G~~i~~ 246 (255)
T PRK06113 186 GIAPGAILTDALK-------SVITP-EIEQKMLQH---------TPIRRLGQPQDIANAALFLCSPAAS--WVSGQILTV 246 (255)
T ss_pred EEecccccccccc-------cccCH-HHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCcccc--CccCCEEEE
Confidence 9999987654211 01111 111111111 1112356889999999998864322 124678888
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.++
T Consensus 247 ~gg 249 (255)
T PRK06113 247 SGG 249 (255)
T ss_pred CCC
Confidence 876
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.1e-13 Score=138.98 Aligned_cols=195 Identities=13% Similarity=0.115 Sum_probs=135.0
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|+|+||||||+||.++++.|++. +.+|++++|.... .++..+ .++ .....++.++.+|+++
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~--G~~Vi~~~r~~~~------~~~~~~-----~~~-----~~~~~~~~~~~~Dl~~ 62 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAA--GARLYLAARDVER------LERLAD-----DLR-----ARGAVAVSTHELDILD 62 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhc--CCEEEEEeCCHHH------HHHHHH-----HHH-----HhcCCeEEEEecCCCC
Confidence 368999999999999999999998 6788999996422 111110 111 1113578999999998
Q ss_pred CCCCCCHHHHHhhcC----CccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEEeCC
Q psy7542 141 PDLGISAEDRQMLSE----TIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVSTA 206 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~----~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vSSa 206 (762)
+. +++++++ .+|+|||+|+..... +.+...+++|+.|+.++++.+... .+..+||++||.
T Consensus 63 ~~------~~~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 136 (243)
T PRK07102 63 TA------SHAAFLDSLPALPDIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSV 136 (243)
T ss_pred hH------HHHHHHHHHhhcCCEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence 76 4544433 579999999865321 223457889999999999887642 245789999998
Q ss_pred cccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEee
Q psy7542 207 YCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILRP 282 (762)
Q Consensus 207 y~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvRP 282 (762)
.+.... +. ...|+.+|+..+.+++..+. .|+++.+++|
T Consensus 137 ~~~~~~----------~~----------------------------~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~p 178 (243)
T PRK07102 137 AGDRGR----------AS----------------------------NYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKP 178 (243)
T ss_pred cccCCC----------CC----------------------------CcccHHHHHHHHHHHHHHHHHhhccCcEEEEEec
Confidence 643211 00 14699999999988887654 2899999999
Q ss_pred eeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc
Q psy7542 283 SIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF 345 (762)
Q Consensus 283 s~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~ 345 (762)
|.|.++...+. . . ...-.+.++++|++++.++...
T Consensus 179 g~v~t~~~~~~-------------------~----~-----~~~~~~~~~~~a~~i~~~~~~~ 213 (243)
T PRK07102 179 GFVRTPMTAGL-------------------K----L-----PGPLTAQPEEVAKDIFRAIEKG 213 (243)
T ss_pred CcccChhhhcc-------------------C----C-----CccccCCHHHHHHHHHHHHhCC
Confidence 98866521100 0 0 0112567899999999888754
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-13 Score=138.13 Aligned_cols=214 Identities=13% Similarity=0.054 Sum_probs=142.8
Q ss_pred EEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCCCC
Q psy7542 65 FITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLG 144 (762)
Q Consensus 65 LVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~LG 144 (762)
|||||||+||++++++|++. +.+|+++.|.. ++++++.. .+ . ...+++++.+|+++++
T Consensus 1 lItGas~~iG~~~a~~l~~~--G~~v~~~~r~~------~~~~~~~~-----~~------~-~~~~~~~~~~Dl~~~~-- 58 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAE--GARVTIASRSR------DRLAAAAR-----AL------G-GGAPVRTAALDITDEA-- 58 (230)
T ss_pred CeecCCChHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HH------h-cCCceEEEEccCCCHH--
Confidence 69999999999999999998 67889998863 22222110 00 0 1246889999999876
Q ss_pred CCHHHHHhhcC---CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcc
Q psy7542 145 ISAEDRQMLSE---TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKV 214 (762)
Q Consensus 145 Ls~~~l~~l~~---~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~ 214 (762)
++.++++ .+|++||+|+.... .+.+...+++|+.|+.+++++... .+..++|++||..+.....
T Consensus 59 ----~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~g~iv~~ss~~~~~~~~- 132 (230)
T PRK07041 59 ----AVDAFFAEAGPFDHVVITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARI-APGGSLTFVSGFAAVRPSA- 132 (230)
T ss_pred ----HHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhh-cCCeEEEEECchhhcCCCC-
Confidence 5655554 47999999986432 134667899999999999995543 3567999999986543211
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--CCCEEEEeeeeeccCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--GMPCMILRPSIIIPIWKDP 292 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--glpv~IvRPs~V~G~~~eP 292 (762)
+ -+.|+.+|+..|.+++..+.. +++++.++||.+-.+....
T Consensus 133 --------~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~ 175 (230)
T PRK07041 133 --------S-----------------------------GVLQGAINAALEALARGLALELAPVRVNTVSPGLVDTPLWSK 175 (230)
T ss_pred --------c-----------------------------chHHHHHHHHHHHHHHHHHHHhhCceEEEEeecccccHHHHh
Confidence 0 157999999999999887764 6788899998775432110
Q ss_pred CCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 293 LPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 293 ~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
.+ . .....++....... + ...+...+|+|+++..++..... .+++|++.++
T Consensus 176 ~~----~-~~~~~~~~~~~~~~-~--------~~~~~~~~dva~~~~~l~~~~~~----~G~~~~v~gg 226 (230)
T PRK07041 176 LA----G-DAREAMFAAAAERL-P--------ARRVGQPEDVANAILFLAANGFT----TGSTVLVDGG 226 (230)
T ss_pred hh----c-cchHHHHHHHHhcC-C--------CCCCcCHHHHHHHHHHHhcCCCc----CCcEEEeCCC
Confidence 00 0 00111222111111 1 01134579999999998875433 4789998876
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-12 Score=136.64 Aligned_cols=222 Identities=14% Similarity=0.055 Sum_probs=142.4
Q ss_pred cCCCEEEEECCCC--hhHHHHHHHHHHcCCCcEEEEEeCCCCCcc------hHHHHHHHhcChhHHHHHhhhhcccccCC
Q psy7542 59 LEHKNIFITGASG--FVGKVLLEKILRTCENVKIYILLRPKKNKN------SRERLEEIFQSPLYEALKKEQSESAIFEK 130 (762)
Q Consensus 59 ~~gk~VLVTGATG--FLG~~LvekLL~~gp~v~V~~LvR~~~~~~------~~eRl~~ll~~~~f~~l~~~~~~~~~~~k 130 (762)
+++++|||||||| .||.+++++|++. +.+|+++.|...+.. ..+... +. +.+ .....+
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~--G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~-----~~~------~~~~~~ 68 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAK--GIDIFFTYWSPYDKTMPWGMHDKEPVL-LK-----EEI------ESYGVR 68 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHc--CCcEEEEcCCccccccccccchhhHHH-HH-----HHH------HhcCCe
Confidence 3678999999996 6999999999998 678899988632110 011110 00 001 112356
Q ss_pred eEEEEeecCCCCCCCCHHHHHhhc-------CCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc--
Q psy7542 131 VIPINGDVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM-- 194 (762)
Q Consensus 131 V~~V~GDl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~-- 194 (762)
++++.+|+++++ ++..++ ..+|+|||+|+..... +.++..+++|+.|+..+++.+...
T Consensus 69 ~~~~~~D~~~~~------~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~ 142 (256)
T PRK12748 69 CEHMEIDLSQPY------APNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYD 142 (256)
T ss_pred EEEEECCCCCHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 899999999865 333322 4589999999875321 235667899999999999988642
Q ss_pred -CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH-
Q psy7542 195 -IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME- 272 (762)
Q Consensus 195 -~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~- 272 (762)
....++|++||..+..+.. . -..|+.||+..|.+++..+.
T Consensus 143 ~~~~~~iv~~ss~~~~~~~~----------~----------------------------~~~Y~~sK~a~~~~~~~la~e 184 (256)
T PRK12748 143 GKAGGRIINLTSGQSLGPMP----------D----------------------------ELAYAATKGAIEAFTKSLAPE 184 (256)
T ss_pred hcCCeEEEEECCccccCCCC----------C----------------------------chHHHHHHHHHHHHHHHHHHH
Confidence 1335899999975432110 0 04799999999999887654
Q ss_pred ---cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCC
Q psy7542 273 ---AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNP 349 (762)
Q Consensus 273 ---~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~ 349 (762)
.+++++.++||.+..+... ......... . .....+...+|+++++..++.....
T Consensus 185 ~~~~~i~v~~i~Pg~~~t~~~~------------~~~~~~~~~-~--------~~~~~~~~~~~~a~~~~~l~~~~~~-- 241 (256)
T PRK12748 185 LAEKGITVNAVNPGPTDTGWIT------------EELKHHLVP-K--------FPQGRVGEPVDAARLIAFLVSEEAK-- 241 (256)
T ss_pred HHHhCeEEEEEEeCcccCCCCC------------hhHHHhhhc-c--------CCCCCCcCHHHHHHHHHHHhCcccc--
Confidence 2899999999876443210 011111100 0 0112345679999998877665332
Q ss_pred CCCceEEEecCC
Q psy7542 350 GNTMRVINLTAN 361 (762)
Q Consensus 350 ~~~~~iyNi~s~ 361 (762)
...+.++++.++
T Consensus 242 ~~~g~~~~~d~g 253 (256)
T PRK12748 242 WITGQVIHSEGG 253 (256)
T ss_pred cccCCEEEecCC
Confidence 114678888765
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-12 Score=138.08 Aligned_cols=228 Identities=11% Similarity=0.058 Sum_probs=146.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|+||||+|+||.+++++|++. +.+|+++.|... +++++.+ .+.. .....++.++.+|+
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~--G~~vv~~~r~~~------~~~~~~~-----~~~~----~~~~~~~~~~~~Dl 67 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFARE--GAAVALADLDAA------LAERAAA-----AIAR----DVAGARVLAVPADV 67 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH-----HHHh----ccCCceEEEEEccC
Confidence 47899999999999999999999998 678888888532 2222111 0110 01235688999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ ++..++ ..+|++||+|+.... .+.++..+++|+.|+..+++++... .+..++|
T Consensus 68 ~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv 141 (260)
T PRK07063 68 TDAA------SVAAAVAAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIV 141 (260)
T ss_pred CCHH------HHHHHHHHHHHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEE
Confidence 9875 444443 368999999996532 2356678999999999998887531 2346899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+..... ....|+.||+..+.+++..+.. |+++
T Consensus 142 ~isS~~~~~~~~--------------------------------------~~~~Y~~sKaa~~~~~~~la~el~~~gIrv 183 (260)
T PRK07063 142 NIASTHAFKIIP--------------------------------------GCFPYPVAKHGLLGLTRALGIEYAARNVRV 183 (260)
T ss_pred EECChhhccCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHhCccCeEE
Confidence 999986532210 0146999999999999887652 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
..++||.|-.+..... |. ....+........ ... ...-+...+|+|++++.++..... .-.+.+..
T Consensus 184 n~v~PG~v~t~~~~~~--~~-~~~~~~~~~~~~~-~~~--------~~~r~~~~~~va~~~~fl~s~~~~--~itG~~i~ 249 (260)
T PRK07063 184 NAIAPGYIETQLTEDW--WN-AQPDPAAARAETL-ALQ--------PMKRIGRPEEVAMTAVFLASDEAP--FINATCIT 249 (260)
T ss_pred EEEeeCCccChhhhhh--hh-ccCChHHHHHHHH-hcC--------CCCCCCCHHHHHHHHHHHcCcccc--ccCCcEEE
Confidence 9999998855432110 00 0001111111111 110 011255689999999998765432 11456666
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 250 vdgg 253 (260)
T PRK07063 250 IDGG 253 (260)
T ss_pred ECCC
Confidence 6654
|
|
| >cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31 | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.7e-14 Score=128.15 Aligned_cols=98 Identities=30% Similarity=0.351 Sum_probs=79.6
Q ss_pred cccccceeeecCCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhch
Q psy7542 521 CISVSGYRLIECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCK 600 (762)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (762)
+|+.......+.+++|++|.|+|. ..|.+.+|||||..+|+ ++++.++
T Consensus 3 ~I~~~~~~~~~~~~~y~~Y~I~v~---~~~~~~rRYseF~~L~~-----------------------------~L~~~~~ 50 (104)
T cd06885 3 SIPDTQELSDEGGSTYVAYNIHIN---GVLHCSVRYSQLHGLNE-----------------------------QLKKEFG 50 (104)
T ss_pred ccCCcceeccCCCCcEEEEEEEEC---CcEEEEechHHHHHHHH-----------------------------HHHHHcC
Confidence 444444443456899999999984 56889999999999998 6666553
Q ss_pred hhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHHhcCCCh
Q psy7542 601 YFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGPSR 680 (762)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (762)
. ...|.||||++.+++++++|+||.+||.||+.++....-+
T Consensus 51 ~---------------------------------------~~~p~lP~K~~~~~~~~~ie~Rr~~Le~yL~~l~~~~~l~ 91 (104)
T cd06885 51 N---------------------------------------RKLPPFPPKKLLPLTPAQLEERRLQLEKYLQAVVQDPRIA 91 (104)
T ss_pred C---------------------------------------CCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHhcChhhc
Confidence 2 2689999999988999999999999999999999887666
Q ss_pred --HHHHhhhCC
Q psy7542 681 --NQVLAFLGV 689 (762)
Q Consensus 681 --~~~~~~~~~ 689 (762)
..+.+||-.
T Consensus 92 ~s~~~~~FL~~ 102 (104)
T cd06885 92 NSDIFNSFLLN 102 (104)
T ss_pred cCHHHHHHHHh
Confidence 889999853
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me |
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.5e-13 Score=139.70 Aligned_cols=221 Identities=17% Similarity=0.098 Sum_probs=145.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||.+++++|++. +.+|+++.|... +++++. +.++ ....++..+.+|+
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~--G~~V~~~~r~~~------~~~~~~-----~~l~------~~~~~~~~~~~D~ 67 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEA--GAQVAIAARHLD------ALEKLA-----DEIG------TSGGKVVPVCCDV 67 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCHH------HHHHHH-----HHHH------hcCCeEEEEEccC
Confidence 47899999999999999999999998 678888888532 222211 1111 1124688899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc----CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM----IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~----~~lk~f 200 (762)
++++ ++.+++ ..+|++||+|+..... +.++..+++|+.|+..+++++... +.-.++
T Consensus 68 ~~~~------~~~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~i 141 (253)
T PRK05867 68 SQHQ------QVTSMLDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVI 141 (253)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEE
Confidence 9876 444433 4689999999975421 345667899999999999887532 112478
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... |. ....|+.||+..+.+++..+. .|++
T Consensus 142 v~~sS~~~~~~~~---------~~---------------------------~~~~Y~asKaal~~~~~~la~e~~~~gI~ 185 (253)
T PRK05867 142 INTASMSGHIINV---------PQ---------------------------QVSHYCASKAAVIHLTKAMAVELAPHKIR 185 (253)
T ss_pred EEECcHHhcCCCC---------CC---------------------------CccchHHHHHHHHHHHHHHHHHHhHhCeE
Confidence 9999875431100 00 014799999999999988765 2899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+..++||.|-.+...+. + .......... ....+...+|+|++++.++..... ...++++
T Consensus 186 vn~i~PG~v~t~~~~~~---------~-~~~~~~~~~~---------~~~r~~~p~~va~~~~~L~s~~~~--~~tG~~i 244 (253)
T PRK05867 186 VNSVSPGYILTELVEPY---------T-EYQPLWEPKI---------PLGRLGRPEELAGLYLYLASEASS--YMTGSDI 244 (253)
T ss_pred EEEeecCCCCCcccccc---------h-HHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCcccC--CcCCCeE
Confidence 99999998855432211 0 1111111110 112367789999999988764332 1246677
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+.++
T Consensus 245 ~vdgG 249 (253)
T PRK05867 245 VIDGG 249 (253)
T ss_pred EECCC
Confidence 77665
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.2e-13 Score=141.85 Aligned_cols=198 Identities=16% Similarity=0.138 Sum_probs=135.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++|+||||||+||++++++|++. +.+|+++.|.. ++++++.+ .+. ....++.++.+|+
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~--G~~Vi~~~R~~------~~l~~~~~-----~l~------~~~~~~~~~~~Dl 98 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARR--GATVVAVARRE------DLLDAVAD-----RIT------RAGGDAMAVPCDL 98 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HHH------hcCCcEEEEEccC
Confidence 57899999999999999999999998 67899999863 22222211 111 1124678899999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCcc---------ccHHHHHHHhHHHHHHHHHHHHH---cCCccE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRFD---------DYMQTYVFLNTRGTRDMLNLSKQ---MIHLQL 199 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f~---------~~l~~~~~~NV~GT~~LLelA~~---~~~lk~ 199 (762)
++++ ++.++++ ++|+|||+||..... +.++..+++|+.|+..+++.+.. ..+..+
T Consensus 99 ~d~~------~v~~~~~~~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~ 172 (293)
T PRK05866 99 SDLD------AVDALVADVEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGH 172 (293)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence 9865 4554444 789999999865321 23456789999998888876642 124578
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 275 (762)
+|++||..+.... .| ..+.|+.||+..+.+++..+. .|+
T Consensus 173 iv~isS~~~~~~~---------~p----------------------------~~~~Y~asKaal~~l~~~la~e~~~~gI 215 (293)
T PRK05866 173 IINVATWGVLSEA---------SP----------------------------LFSVYNASKAALSAVSRVIETEWGDRGV 215 (293)
T ss_pred EEEECChhhcCCC---------CC----------------------------CcchHHHHHHHHHHHHHHHHHHhcccCc
Confidence 9999997442210 01 015799999999988877655 289
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF 345 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~ 345 (762)
.+++++||.|-.+...+. ... . ....+..+++|+.++.++.+.
T Consensus 216 ~v~~v~pg~v~T~~~~~~----------------------~~~--~---~~~~~~pe~vA~~~~~~~~~~ 258 (293)
T PRK05866 216 HSTTLYYPLVATPMIAPT----------------------KAY--D---GLPALTADEAAEWMVTAARTR 258 (293)
T ss_pred EEEEEEcCcccCcccccc----------------------ccc--c---CCCCCCHHHHHHHHHHHHhcC
Confidence 999999997654421100 000 0 112468899999999998754
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-12 Score=136.12 Aligned_cols=219 Identities=11% Similarity=0.010 Sum_probs=143.5
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+++|+||||||+||.+++++|++. +.+|+++.|.... ..+++.+.+ .....++..+.+|+++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~--G~~V~~~~~~~~~--~~~~~~~~~--------------~~~~~~~~~~~~Dl~~ 63 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQ--GFDIGITWHSDEE--GAKETAEEV--------------RSHGVRAEIRQLDLSD 63 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCChH--HHHHHHHHH--------------HhcCCceEEEEccCCC
Confidence 578999999999999999999998 6777777664321 112222111 1123578899999998
Q ss_pred CCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc----CCccEEEE
Q psy7542 141 PDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM----IHLQLFVY 202 (762)
Q Consensus 141 ~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~----~~lk~fV~ 202 (762)
++ +++.++ ..+|+|||+|+.... .+.+...+.+|+.|+..+++++... ++-.++|+
T Consensus 64 ~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~ 137 (256)
T PRK12743 64 LP------EGAQALDKLIQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIIN 137 (256)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 75 343333 358999999997542 1345678999999999999987653 11258999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~ 278 (762)
+||..+..... + ...|+.+|+..+.+++..+. .|++++
T Consensus 138 isS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~ 179 (256)
T PRK12743 138 ITSVHEHTPLP---------G-----------------------------ASAYTAAKHALGGLTKAMALELVEHGILVN 179 (256)
T ss_pred EeeccccCCCC---------C-----------------------------cchhHHHHHHHHHHHHHHHHHhhhhCeEEE
Confidence 99975322110 0 14799999999999887765 289999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
.++||.+.++..... +.........+. ....+...+|+++++..++..... ...+.++.+
T Consensus 180 ~v~Pg~~~t~~~~~~---------~~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~~ 239 (256)
T PRK12743 180 AVAPGAIATPMNGMD---------DSDVKPDSRPGI---------PLGRPGDTHEIASLVAWLCSEGAS--YTTGQSLIV 239 (256)
T ss_pred EEEeCCccCcccccc---------ChHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHhCcccc--CcCCcEEEE
Confidence 999998877542210 011111111110 011245789999999888754432 114667777
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.++
T Consensus 240 dgg 242 (256)
T PRK12743 240 DGG 242 (256)
T ss_pred CCC
Confidence 665
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-12 Score=138.36 Aligned_cols=227 Identities=16% Similarity=0.100 Sum_probs=145.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++|+||||+|+||++++++|++. +.+|+++.|... .++++.+ .+ .....++.++.+|+
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~--G~~V~~~~r~~~------~~~~~~~-----~~------~~~~~~~~~~~~Dl 68 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARA--GAKVAILDRNQE------KAEAVVA-----EI------KAAGGEALAVKADV 68 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH-----HH------HhcCCeEEEEECCC
Confidence 47899999999999999999999998 678888888632 1211110 01 11124688999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc----------------------cccHHHHHHHhHHHHHHHHH
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF----------------------DDYMQTYVFLNTRGTRDMLN 189 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f----------------------~~~l~~~~~~NV~GT~~LLe 189 (762)
++++ ++..++ ..+|+|||+|+.... .+.+...+++|+.++..+++
T Consensus 69 ~~~~------~v~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~ 142 (278)
T PRK08277 69 LDKE------SLEQARQQILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQ 142 (278)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHH
Confidence 9865 344332 468999999995321 13466788999999987766
Q ss_pred HHHHc---CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHH
Q psy7542 190 LSKQM---IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGV 266 (762)
Q Consensus 190 lA~~~---~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~l 266 (762)
.+... .+..++|++||..+..... + -..|+.||+..+.+
T Consensus 143 ~~~~~~~~~~~g~ii~isS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~l 184 (278)
T PRK08277 143 VFAKDMVGRKGGNIINISSMNAFTPLT---------K-----------------------------VPAYSAAKAAISNF 184 (278)
T ss_pred HHHHHHHhcCCcEEEEEccchhcCCCC---------C-----------------------------CchhHHHHHHHHHH
Confidence 55431 1346899999986543211 0 15799999999999
Q ss_pred HHHHHHc----CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHh
Q psy7542 267 VTEYMEA----GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLST 342 (762)
Q Consensus 267 v~~~~~~----glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~ 342 (762)
++..+.. |+++.+++||.|.++......-..+.. ........... .....+...+|+|++++.++
T Consensus 185 ~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~--~~~~~~~~~~~---------~p~~r~~~~~dva~~~~~l~ 253 (278)
T PRK08277 185 TQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGS--LTERANKILAH---------TPMGRFGKPEELLGTLLWLA 253 (278)
T ss_pred HHHHHHHhCccCeEEEEEEeccCcCcchhhhhcccccc--chhHHHHHhcc---------CCccCCCCHHHHHHHHHHHc
Confidence 8877663 799999999998776432110000000 00111111111 11233667899999999987
Q ss_pred hc-ccCCCCCCceEEEecCC
Q psy7542 343 WN-FLSNPGNTMRVINLTAN 361 (762)
Q Consensus 343 ~~-~~~~~~~~~~iyNi~s~ 361 (762)
.. .... ..+.+..+.++
T Consensus 254 s~~~~~~--~tG~~i~vdgG 271 (278)
T PRK08277 254 DEKASSF--VTGVVLPVDGG 271 (278)
T ss_pred CccccCC--cCCCEEEECCC
Confidence 75 3321 13567777654
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-13 Score=147.20 Aligned_cols=197 Identities=17% Similarity=0.104 Sum_probs=120.1
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++++|+||||||+||.+++++|++. +.+|+++.|... +.+++.+ .+ .....++.++.+|++
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~--G~~V~~~~r~~~------~~~~~~~-----~l------~~~~~~~~~~~~Dl~ 65 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKR--GWHVIMACRNLK------KAEAAAQ-----EL------GIPPDSYTIIHIDLG 65 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEECCHH------HHHHHHH-----Hh------hccCCceEEEEecCC
Confidence 6889999999999999999999998 678898888532 2222111 00 011246889999999
Q ss_pred CCCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc----C-CccE
Q psy7542 140 VPDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM----I-HLQL 199 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~----~-~lk~ 199 (762)
+.+ ++..+++ .+|+|||+||.... .+.++..+++|+.|+..+++++... + +..+
T Consensus 66 ~~~------~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~r 139 (322)
T PRK07453 66 DLD------SVRRFVDDFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPR 139 (322)
T ss_pred CHH------HHHHHHHHHHHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCce
Confidence 865 4444433 48999999996421 1346678999999999998887642 1 1258
Q ss_pred EEEEeCCcccCCC----cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--
Q psy7542 200 FVYVSTAYCHPKE----KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-- 273 (762)
Q Consensus 200 fV~vSSay~~~~~----~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-- 273 (762)
+|++||...+... .+..+ +.+..++.......... ....... .....+.|+.||+..+.+.++++++
T Consensus 140 iV~vsS~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~Y~~SK~a~~~~~~~la~~~~ 212 (322)
T PRK07453 140 LVILGTVTANPKELGGKIPIPA-----PADLGDLSGFEAGFKAP-ISMADGK-KFKPGKAYKDSKLCNMLTMRELHRRYH 212 (322)
T ss_pred EEEEcccccCccccCCccCCCC-----ccchhhhhcchhccccc-ccccCcc-CCCccchhhHhHHHHHHHHHHHHHhhc
Confidence 9999997433211 00110 00000000000000000 0000000 0011268999999887776666542
Q ss_pred ---CCCEEEEeeeeeccC
Q psy7542 274 ---GMPCMILRPSIIIPI 288 (762)
Q Consensus 274 ---glpv~IvRPs~V~G~ 288 (762)
|+.++.+|||.|+++
T Consensus 213 ~~~gi~v~~v~PG~v~~t 230 (322)
T PRK07453 213 ESTGITFSSLYPGCVADT 230 (322)
T ss_pred ccCCeEEEEecCCcccCC
Confidence 799999999999765
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-12 Score=134.46 Aligned_cols=217 Identities=13% Similarity=0.118 Sum_probs=140.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|++|||||||+||++++++|++. +.+|+++.|+.. ++++++.. .+ .....++.++.+|++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~--G~~v~~~~r~~~-----~~~~~~~~-----~~------~~~~~~~~~~~~D~~~~ 62 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKD--GYRVAANCGPNE-----ERAEAWLQ-----EQ------GALGFDFRVVEGDVSSF 62 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCCH-----HHHHHHHH-----HH------HhhCCceEEEEecCCCH
Confidence 58999999999999999999998 667888888421 22222111 00 11135788999999986
Q ss_pred CCCCCHHHHHhh-------cCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHH----HHcCCccEEEEE
Q psy7542 142 DLGISAEDRQML-------SETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLS----KQMIHLQLFVYV 203 (762)
Q Consensus 142 ~LGLs~~~l~~l-------~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA----~~~~~lk~fV~v 203 (762)
. ++..+ ...+|+|||+|+.... .+.+...+++|+.++..+++.+ ++. +..++|++
T Consensus 63 ~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~i 135 (242)
T TIGR01829 63 E------SCKAAVAKVEAELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRER-GWGRIINI 135 (242)
T ss_pred H------HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEE
Confidence 5 34333 3468999999986532 1345667899999988865554 333 55789999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~I 279 (762)
||..+..... ....|+.+|...+.+++..+. .++++++
T Consensus 136 ss~~~~~~~~--------------------------------------~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~ 177 (242)
T TIGR01829 136 SSVNGQKGQF--------------------------------------GQTNYSAAKAGMIGFTKALAQEGATKGVTVNT 177 (242)
T ss_pred cchhhcCCCC--------------------------------------CcchhHHHHHHHHHHHHHHHHHhhhhCeEEEE
Confidence 9975432110 014799999988877776544 2899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
++||.+.++...+. +...+.....+. ....+...+++++++..++.+... .-.++++.+.
T Consensus 178 i~pg~~~t~~~~~~---------~~~~~~~~~~~~---------~~~~~~~~~~~a~~~~~l~~~~~~--~~~G~~~~~~ 237 (242)
T TIGR01829 178 ISPGYIATDMVMAM---------REDVLNSIVAQI---------PVGRLGRPEEIAAAVAFLASEEAG--YITGATLSIN 237 (242)
T ss_pred EeeCCCcCcccccc---------chHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCchhc--CccCCEEEec
Confidence 99998876543211 111222221111 112355678999998777654322 1246788887
Q ss_pred CC
Q psy7542 360 AN 361 (762)
Q Consensus 360 s~ 361 (762)
++
T Consensus 238 gg 239 (242)
T TIGR01829 238 GG 239 (242)
T ss_pred CC
Confidence 65
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-12 Score=137.17 Aligned_cols=224 Identities=15% Similarity=0.127 Sum_probs=163.8
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++|||||||||+|++++++|+++ +.+|.+++|...... . .. ..++++.+|+.++
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~--~~~v~~~~r~~~~~~------~-----------------~~-~~v~~~~~d~~~~ 54 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR--GHEVRAAVRNPEAAA------A-----------------LA-GGVEVVLGDLRDP 54 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC--CCEEEEEEeCHHHHH------h-----------------hc-CCcEEEEeccCCH
Confidence 47999999999999999999999 778999999764321 1 11 5789999999998
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccCC
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYP 221 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~~ 221 (762)
. .+...+++++.++++..... .+. ........+..+..+.+. ...++++++|...+....
T Consensus 55 ~------~l~~a~~G~~~~~~i~~~~~-~~~--~~~~~~~~~~~~~a~~a~--~~~~~~~~~s~~~~~~~~--------- 114 (275)
T COG0702 55 K------SLVAGAKGVDGVLLISGLLD-GSD--AFRAVQVTAVVRAAEAAG--AGVKHGVSLSVLGADAAS--------- 114 (275)
T ss_pred h------HHHHHhccccEEEEEecccc-ccc--chhHHHHHHHHHHHHHhc--CCceEEEEeccCCCCCCC---------
Confidence 7 78999999999999988765 333 233334444445554444 257888998887653311
Q ss_pred CCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCCC
Q psy7542 222 PPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNIN 301 (762)
Q Consensus 222 ~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~~ 301 (762)
+..|..+|..+|+++... |++.+++|+...+.....
T Consensus 115 -------------------------------~~~~~~~~~~~e~~l~~s---g~~~t~lr~~~~~~~~~~---------- 150 (275)
T COG0702 115 -------------------------------PSALARAKAAVEAALRSS---GIPYTTLRRAAFYLGAGA---------- 150 (275)
T ss_pred -------------------------------ccHHHHHHHHHHHHHHhc---CCCeEEEecCeeeeccch----------
Confidence 257999999999999987 899999996655443211
Q ss_pred CchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHhhcc
Q psy7542 302 GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIARN 381 (762)
Q Consensus 302 gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~~G~ 381 (762)
. ........+......+ ......+.++|++.++..++..+.. .+.+|.++.+ ...+..+..+.+....|+
T Consensus 151 -~-~~~~~~~~~~~~~~~~--~~~~~~i~~~d~a~~~~~~l~~~~~----~~~~~~l~g~--~~~~~~~~~~~l~~~~gr 220 (275)
T COG0702 151 -A-FIEAAEAAGLPVIPRG--IGRLSPIAVDDVAEALAAALDAPAT----AGRTYELAGP--EALTLAELASGLDYTIGR 220 (275)
T ss_pred -h-HHHHHHhhCCceecCC--CCceeeeEHHHHHHHHHHHhcCCcc----cCcEEEccCC--ceecHHHHHHHHHHHhCC
Confidence 1 0223333333332222 3378899999999999999887764 4789999998 889999999999999966
Q ss_pred CCCC
Q psy7542 382 KVPL 385 (762)
Q Consensus 382 ~~P~ 385 (762)
+..+
T Consensus 221 ~~~~ 224 (275)
T COG0702 221 PVGL 224 (275)
T ss_pred ccee
Confidence 5443
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-12 Score=136.81 Aligned_cols=226 Identities=15% Similarity=0.135 Sum_probs=148.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcE-EEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVK-IYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~-V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++|+|+||||+|+||+.++++|++. +.+ |+++.|.... . +.+.+ .++ ....++..+.+|
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~--G~~~V~~~~r~~~~--~-~~~~~--------~l~------~~~~~~~~~~~D 64 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAER--GAAGLVICGRNAEK--G-EAQAA--------ELE------ALGAKAVFVQAD 64 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHC--CCCeEEEEcCCHHH--H-HHHHH--------HHH------hcCCeEEEEEcc
Confidence 57899999999999999999999998 665 8888886321 1 11111 111 113467889999
Q ss_pred cCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc----CCccE
Q psy7542 138 VAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM----IHLQL 199 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~----~~lk~ 199 (762)
+++++ ++.+++ ..+|+|||+|+.... .+.++..+++|+.|+.++++.+... ....+
T Consensus 65 ~~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~ 138 (260)
T PRK06198 65 LSDVE------DCRRVVAAADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGT 138 (260)
T ss_pred CCCHH------HHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCE
Confidence 99865 444443 358999999997531 1334567899999999999888542 11357
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----gl 275 (762)
+|++||..+..... ..+.|+.+|...|.+++..+.. ++
T Consensus 139 iv~~ss~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~~a~e~~~~~i 180 (260)
T PRK06198 139 IVNIGSMSAHGGQP--------------------------------------FLAAYCASKGALATLTRNAAYALLRNRI 180 (260)
T ss_pred EEEECCcccccCCC--------------------------------------CcchhHHHHHHHHHHHHHHHHHhcccCe
Confidence 99999986543211 0157999999999998877652 79
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCC-CCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNI-NGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~-~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
.++.++||.+.++...... ..+ .....++...... .....+++++|+++++..++..... ...++
T Consensus 181 ~v~~i~pg~~~t~~~~~~~---~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~l~~~~~~--~~~G~ 246 (260)
T PRK06198 181 RVNGLNIGWMATEGEDRIQ---REFHGAPDDWLEKAAAT---------QPFGRLLDPDEVARAVAFLLSDESG--LMTGS 246 (260)
T ss_pred EEEEEeeccccCcchhhhh---hhccCCChHHHHHHhcc---------CCccCCcCHHHHHHHHHHHcChhhC--CccCc
Confidence 9999999988776421100 000 0111122211111 1123468999999999998764432 12477
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
++++.++
T Consensus 247 ~~~~~~~ 253 (260)
T PRK06198 247 VIDFDQS 253 (260)
T ss_pred eEeECCc
Confidence 8888776
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-12 Score=136.35 Aligned_cols=203 Identities=15% Similarity=0.095 Sum_probs=135.2
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
+..++++||||||+|+||.+++++|++. +.+|+++.|.... .+++.+. ++ .....++.++.+
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~--G~~Vi~~~r~~~~---~~~~~~~--------l~-----~~~~~~~~~~~~ 69 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARH--GATVILLGRTEEK---LEAVYDE--------IE-----AAGGPQPAIIPL 69 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHC--CCcEEEEeCCHHH---HHHHHHH--------HH-----hcCCCCceEEEe
Confidence 3468999999999999999999999998 6788999986421 1222111 11 111246778888
Q ss_pred ecCCCCCCCCHHHHHh-------hcCCccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHH---cCCcc
Q psy7542 137 DVAVPDLGISAEDRQM-------LSETIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQ---MIHLQ 198 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~-------l~~~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~---~~~lk 198 (762)
|+++.+ .+++.+ ....+|+|||+|+.... .+.++..+++|+.|+.++++++.. ..+..
T Consensus 70 d~~~~~----~~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~ 145 (247)
T PRK08945 70 DLLTAT----PQNYQQLADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAA 145 (247)
T ss_pred cccCCC----HHHHHHHHHHHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCC
Confidence 986432 122222 23468999999987432 134667899999999999887753 12567
Q ss_pred EEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----C
Q psy7542 199 LFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----G 274 (762)
Q Consensus 199 ~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----g 274 (762)
+||++||..+..... .-..|+.||+..|.+++..+.. +
T Consensus 146 ~iv~~ss~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~~~~~~~~~~ 187 (247)
T PRK08945 146 SLVFTSSSVGRQGRA--------------------------------------NWGAYAVSKFATEGMMQVLADEYQGTN 187 (247)
T ss_pred EEEEEccHhhcCCCC--------------------------------------CCcccHHHHHHHHHHHHHHHHHhcccC
Confidence 999999975432110 0147999999999999887662 7
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF 345 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~ 345 (762)
+++++++|+.+-++...+. . .+ .....+...+++++++..++...
T Consensus 188 i~~~~v~pg~v~t~~~~~~-------~----------~~---------~~~~~~~~~~~~~~~~~~~~~~~ 232 (247)
T PRK08945 188 LRVNCINPGGTRTAMRASA-------F----------PG---------EDPQKLKTPEDIMPLYLYLMGDD 232 (247)
T ss_pred EEEEEEecCCccCcchhhh-------c----------Cc---------ccccCCCCHHHHHHHHHHHhCcc
Confidence 8889999987754421100 0 00 00123567899999999987543
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=139.21 Aligned_cols=226 Identities=15% Similarity=0.120 Sum_probs=144.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|++|||||+|+||.+++++|++. +.+|+++.|. . ...+.++++ .....++.++.+|+
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~--G~~vi~~~r~-~--~~~~~~~~~---------------~~~~~~~~~~~~Dl 63 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQE--GAYVLAVDIA-E--AVSETVDKI---------------KSNGGKAKAYHVDI 63 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCc-H--HHHHHHHHH---------------HhcCCeEEEEEeec
Confidence 47899999999999999999999998 7788999886 2 111112121 11124688999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-----c---ccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-----D---DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-----~---~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
++++ ++..++ ..+|++||+||.... + +.+...+++|+.|+..+++.+... .+ .++
T Consensus 64 ~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~i 136 (272)
T PRK08589 64 SDEQ------QVKDFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-GSI 136 (272)
T ss_pred CCHH------HHHHHHHHHHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEE
Confidence 9875 444333 358999999987531 1 235668889999998777776532 13 589
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+.... + ....|+.||+..+.+++..+. .|++
T Consensus 137 v~isS~~~~~~~----------~----------------------------~~~~Y~asKaal~~l~~~la~e~~~~gI~ 178 (272)
T PRK08589 137 INTSSFSGQAAD----------L----------------------------YRSGYNAAKGAVINFTKSIAIEYGRDGIR 178 (272)
T ss_pred EEeCchhhcCCC----------C----------------------------CCchHHHHHHHHHHHHHHHHHHhhhcCeE
Confidence 999997543211 0 015799999999999988765 2899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
++.+.||.|..+......+. ....+...... ..... .....+...+|+|++++.++...... ..+.++
T Consensus 179 v~~v~PG~v~T~~~~~~~~~-----~~~~~~~~~~~-~~~~~----~~~~~~~~~~~va~~~~~l~s~~~~~--~~G~~i 246 (272)
T PRK08589 179 ANAIAPGTIETPLVDKLTGT-----SEDEAGKTFRE-NQKWM----TPLGRLGKPEEVAKLVVFLASDDSSF--ITGETI 246 (272)
T ss_pred EEEEecCcccCchhhhhccc-----chhhHHHHHhh-hhhcc----CCCCCCcCHHHHHHHHHHHcCchhcC--cCCCEE
Confidence 99999998865532211110 00000000000 00000 01123567899999999887653321 146677
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+.++
T Consensus 247 ~vdgg 251 (272)
T PRK08589 247 RIDGG 251 (272)
T ss_pred EECCC
Confidence 77665
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=136.66 Aligned_cols=196 Identities=16% Similarity=0.044 Sum_probs=134.4
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+++|+||||||+||++++++|++. +.+|+++.|... +++++.. .+... ....++.++.+|+++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~--g~~v~~~~r~~~------~~~~~~~-----~~~~~----~~~~~~~~~~~D~~~ 64 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAK--GRDLALCARRTD------RLEELKA-----ELLAR----YPGIKVAVAALDVND 64 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHH------HHHHHHH-----HHHhh----CCCceEEEEEcCCCC
Confidence 578999999999999999999998 568888888642 2222211 11111 113478899999998
Q ss_pred CCCCCCHHHHHhh-------cCCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEE
Q psy7542 141 PDLGISAEDRQML-------SETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYV 203 (762)
Q Consensus 141 ~~LGLs~~~l~~l-------~~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~v 203 (762)
++ ++..+ ...+|+|||+||..... +.+...+++|+.|+.++++.+... .+..+||++
T Consensus 65 ~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ 138 (248)
T PRK08251 65 HD------QVFEVFAEFRDELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLI 138 (248)
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 75 34333 34689999999865321 234567899999999998887531 255789999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~I 279 (762)
||..+.... +.+ .+.|+.||+..+.++...+.. ++++++
T Consensus 139 sS~~~~~~~--------~~~-----------------------------~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~ 181 (248)
T PRK08251 139 SSVSAVRGL--------PGV-----------------------------KAAYAASKAGVASLGEGLRAELAKTPIKVST 181 (248)
T ss_pred eccccccCC--------CCC-----------------------------cccHHHHHHHHHHHHHHHHHHhcccCcEEEE
Confidence 997543211 000 157999999999888776652 789999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF 345 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~ 345 (762)
++||.|.++.... .+ . ....++.+++|++++.++...
T Consensus 182 v~pg~v~t~~~~~-------------------~~---------~-~~~~~~~~~~a~~i~~~~~~~ 218 (248)
T PRK08251 182 IEPGYIRSEMNAK-------------------AK---------S-TPFMVDTETGVKALVKAIEKE 218 (248)
T ss_pred EecCcCcchhhhc-------------------cc---------c-CCccCCHHHHHHHHHHHHhcC
Confidence 9999875542110 00 0 123578899999999988754
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-12 Score=135.59 Aligned_cols=224 Identities=15% Similarity=0.107 Sum_probs=146.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+++||||+|.||+.++++|++. +.+|+++.|... +++++. +.++.. ....++..+.+|+
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~--G~~v~~~~r~~~------~~~~~~-----~~l~~~----~~~~~~~~~~~Dl 69 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGL--GADVLIVARDAD------ALAQAR-----DELAEE----FPEREVHGLAADV 69 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHH------HHHHHH-----HHHHhh----CCCCeEEEEECCC
Confidence 47899999999999999999999998 678899988632 222211 111111 1125788999999
Q ss_pred CCCCCCCCHHHHHhh-------cCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQML-------SETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l-------~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ ++..+ ...+|+|||+|+.... .+.++..+.+|+.|+..+++++... .+..++|
T Consensus 70 ~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii 143 (257)
T PRK09242 70 SDDE------DRRAILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIV 143 (257)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEE
Confidence 9865 33332 3468999999996321 2456678999999999999887531 2447899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..+.. ....|+.||...+.+++..+. .++++
T Consensus 144 ~~sS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v 185 (257)
T PRK09242 144 NIGSVSGLTHVR--------------------------------------SGAPYGMTKAALLQMTRNLAVEWAEDGIRV 185 (257)
T ss_pred EECccccCCCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHHHHhCeEE
Confidence 999986543211 015799999999998887654 28999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
+.++||.|.++...+ +.. . ..+........ ...-+...+|+++++..++...... ..+++++
T Consensus 186 ~~i~Pg~i~t~~~~~---~~~---~-~~~~~~~~~~~---------~~~~~~~~~~va~~~~~l~~~~~~~--~~g~~i~ 247 (257)
T PRK09242 186 NAVAPWYIRTPLTSG---PLS---D-PDYYEQVIERT---------PMRRVGEPEEVAAAVAFLCMPAASY--ITGQCIA 247 (257)
T ss_pred EEEEECCCCCccccc---ccC---C-hHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCccccc--ccCCEEE
Confidence 999999887664321 110 1 11111111111 1122446789999998887543221 1356777
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 248 ~~gg 251 (257)
T PRK09242 248 VDGG 251 (257)
T ss_pred ECCC
Confidence 7554
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-12 Score=134.33 Aligned_cols=223 Identities=17% Similarity=0.125 Sum_probs=143.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+++||||+|+||.+++++|++. +.+|+++.|... +++++.+ .++ ....++.++.+|+
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~--G~~v~~~~r~~~------~~~~~~~-----~~~------~~~~~~~~~~~D~ 64 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFARE--GAKVVVGARRQA------ELDQLVA-----EIR------AEGGEAVALAGDV 64 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH-----HHH------hcCCcEEEEEcCC
Confidence 46899999999999999999999998 678899998642 2222111 111 1124688899999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
++++ +++++++ .+|++||+|+.... .+.++..+++|+.|+..+.+.+... .+..++
T Consensus 65 ~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~i 138 (254)
T PRK07478 65 RDEA------YAKALVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSL 138 (254)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceE
Confidence 9876 4444433 68999999997531 1345678999999888776655431 234689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+.... .| ....|+.||+..+.+++..+.. |+.
T Consensus 139 v~~sS~~~~~~~---------~~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 181 (254)
T PRK07478 139 IFTSTFVGHTAG---------FP----------------------------GMAAYAASKAGLIGLTQVLAAEYGAQGIR 181 (254)
T ss_pred EEEechHhhccC---------CC----------------------------CcchhHHHHHHHHHHHHHHHHHHhhcCEE
Confidence 999997543210 00 0157999999999998877653 799
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+++++||.|-.+.... . ....-........ .....+...+|+|++++.++...... ..++++
T Consensus 182 v~~v~PG~v~t~~~~~-------~-~~~~~~~~~~~~~--------~~~~~~~~~~~va~~~~~l~s~~~~~--~~G~~~ 243 (254)
T PRK07478 182 VNALLPGGTDTPMGRA-------M-GDTPEALAFVAGL--------HALKRMAQPEEIAQAALFLASDAASF--VTGTAL 243 (254)
T ss_pred EEEEeeCcccCccccc-------c-cCCHHHHHHHHhc--------CCCCCCcCHHHHHHHHHHHcCchhcC--CCCCeE
Confidence 9999999885542110 0 0000111111111 01123567899999999887654321 135666
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+..+
T Consensus 244 ~~dgg 248 (254)
T PRK07478 244 LVDGG 248 (254)
T ss_pred EeCCc
Confidence 66544
|
|
| >cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-13 Score=128.92 Aligned_cols=100 Identities=23% Similarity=0.313 Sum_probs=79.4
Q ss_pred ccccceeeec--CCCCeEEEEEEEEEcC-------------eEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchh
Q psy7542 522 ISVSGYRLIE--CEKPYYVYVIHVRMFQ-------------QHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSR 586 (762)
Q Consensus 522 ~~~~~~~~~~--~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (762)
|.|+.++.+. ..+.|++|.|.|.... ..|.|.||||||..||.
T Consensus 4 v~vp~~~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~---------------------- 61 (120)
T cd06868 4 LTVPEYQEIRGKTSSGHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYK---------------------- 61 (120)
T ss_pred eecCCceeecCCCCCCeEEEEEEEEeCchhccCcccccCCceeEEEeCCcHHHHHHHH----------------------
Confidence 4444544444 4589999999987543 26999999999999998
Q ss_pred hhhhhHHHHhhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCChhHHHHHHHHH
Q psy7542 587 TLKQNRRQKKRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLL 666 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (762)
++++.+.. ...|.||+|++.+ +++++++||++|
T Consensus 62 -------~L~~~~p~---------------------------------------~~iPplP~K~~~~-~~~~ie~Rr~~L 94 (120)
T cd06868 62 -------KLSEKYPG---------------------------------------TILPPLPRKALFV-SESDIRERRAAF 94 (120)
T ss_pred -------HHHHHCCC---------------------------------------CCCCCCCCCcccC-CHHHHHHHHHHH
Confidence 56555422 2578899999877 899999999999
Q ss_pred HHHHHHHHhcCCCh--HHHHhhhCCC
Q psy7542 667 EIYLKEMFKFGPSR--NQVLAFLGVN 690 (762)
Q Consensus 667 ~~~~~~~~~~~~~~--~~~~~~~~~~ 690 (762)
|.||+.++....-+ ..+.+||++.
T Consensus 95 e~fL~~i~~~p~l~~s~~~~~FL~~~ 120 (120)
T cd06868 95 NDFMRFISKDEKLANCPELLEFLGVK 120 (120)
T ss_pred HHHHHHHHcChhhhcCHHHHHHhcCC
Confidence 99999998876555 6999999863
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes. |
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-12 Score=136.06 Aligned_cols=201 Identities=11% Similarity=0.073 Sum_probs=131.3
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++++|+||||||+||++++++|++.+ +.+|+++.|..... .++..+++. .....+++++.+|++
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~g-g~~V~~~~r~~~~~-~~~~~~~l~--------------~~~~~~v~~~~~D~~ 70 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNA-PARVVLAALPDDPR-RDAAVAQMK--------------AAGASSVEVIDFDAL 70 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcC-CCeEEEEeCCcchh-HHHHHHHHH--------------hcCCCceEEEEecCC
Confidence 67899999999999999999999983 36889999875420 111111211 111236899999999
Q ss_pred CCCCCCCHHHHHhhc--CCccEEEEcccccCcc----cc---HHHHHHHhHHHHHHH----HHHHHHcCCccEEEEEeCC
Q psy7542 140 VPDLGISAEDRQMLS--ETIHIVYHIAATVRFD----DY---MQTYVFLNTRGTRDM----LNLSKQMIHLQLFVYVSTA 206 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~--~~vDiViH~AA~v~f~----~~---l~~~~~~NV~GT~~L----LelA~~~~~lk~fV~vSSa 206 (762)
+++- -.+.++++. .++|++||+||..... .. ..+.+++|+.|+..+ ++++++. +..+||++||.
T Consensus 71 ~~~~--~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~-~~~~iv~isS~ 147 (253)
T PRK07904 71 DTDS--HPKVIDAAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQ-GFGQIIAMSSV 147 (253)
T ss_pred ChHH--HHHHHHHHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhc-CCceEEEEech
Confidence 8651 011123332 3699999999875321 11 124689999988774 5555554 45799999998
Q ss_pred cccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEee
Q psy7542 207 YCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILRP 282 (762)
Q Consensus 207 y~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvRP 282 (762)
.+.... +. ...|+.||+..+.+.+..+. .++++++++|
T Consensus 148 ~g~~~~----------~~----------------------------~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~P 189 (253)
T PRK07904 148 AGERVR----------RS----------------------------NFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRP 189 (253)
T ss_pred hhcCCC----------CC----------------------------CcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEee
Confidence 642211 00 14699999988876655433 3899999999
Q ss_pred eeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 283 SIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 283 s~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
|.|..+... .. . .....++.+++|+.++.++.+..
T Consensus 190 g~v~t~~~~-------~~-----------~-----------~~~~~~~~~~~A~~i~~~~~~~~ 224 (253)
T PRK07904 190 GQVRTRMSA-------HA-----------K-----------EAPLTVDKEDVAKLAVTAVAKGK 224 (253)
T ss_pred Cceecchhc-------cC-----------C-----------CCCCCCCHHHHHHHHHHHHHcCC
Confidence 988654211 00 0 00124789999999999987653
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-12 Score=137.68 Aligned_cols=221 Identities=11% Similarity=0.027 Sum_probs=144.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++++||||||+||++++++|++. +.+|+++.|... +++++.+ ....++.++.+|+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~~r~~~------~~~~~~~--------------~~~~~~~~~~~Dl 61 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAA--GARVAIVDIDAD------NGAAVAA--------------SLGERARFIATDI 61 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH--------------HhCCeeEEEEecC
Confidence 47899999999999999999999998 678899988642 1222111 1124688999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVYV 203 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~v 203 (762)
++++ ++.+++ ..+|++||+|+.... .+.+...+++|+.|+..+++.+... ++-.++|++
T Consensus 62 ~~~~------~~~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~i 135 (261)
T PRK08265 62 TDDA------AIERAVATVVARFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNF 135 (261)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 9865 444443 357999999986421 2346678999999999999887642 233689999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~I 279 (762)
||..+..... . ...|+.+|+..+.+++..+.. |+++++
T Consensus 136 sS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~ 177 (261)
T PRK08265 136 TSISAKFAQT----------G----------------------------RWLYPASKAAIRQLTRSMAMDLAPDGIRVNS 177 (261)
T ss_pred CchhhccCCC----------C----------------------------CchhHHHHHHHHHHHHHHHHHhcccCEEEEE
Confidence 9975432110 0 147999999999988877652 899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
++||.+..+....... +........... . .....+...+|+|+++..++..... ...+.++.+.
T Consensus 178 v~PG~~~t~~~~~~~~------~~~~~~~~~~~~----~----~p~~r~~~p~dva~~~~~l~s~~~~--~~tG~~i~vd 241 (261)
T PRK08265 178 VSPGWTWSRVMDELSG------GDRAKADRVAAP----F----HLLGRVGDPEEVAQVVAFLCSDAAS--FVTGADYAVD 241 (261)
T ss_pred EccCCccChhhhhhcc------cchhHHHHhhcc----c----CCCCCccCHHHHHHHHHHHcCcccc--CccCcEEEEC
Confidence 9999765442111000 000000011000 0 0112356789999999998865432 1246677776
Q ss_pred CC
Q psy7542 360 AN 361 (762)
Q Consensus 360 s~ 361 (762)
++
T Consensus 242 gg 243 (261)
T PRK08265 242 GG 243 (261)
T ss_pred CC
Confidence 65
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=137.86 Aligned_cols=220 Identities=15% Similarity=0.074 Sum_probs=141.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+++||||+|+||+++++.|++. +.+|+++.|... +..+++. ..++.++.+|+
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~--G~~v~~~~~~~~-----~~~~~l~-----------------~~~~~~~~~Dl 60 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLRE--GAKVAVLYNSAE-----NEAKELR-----------------EKGVFTIKCDV 60 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCcH-----HHHHHHH-----------------hCCCeEEEecC
Confidence 47899999999999999999999998 667777766432 1121110 12577899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHH----HHcCCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLS----KQMIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA----~~~~~lk~f 200 (762)
++++ ++.+++ ..+|+|||+|+.... .+.++..+++|+.|+..+.+.+ ++. +..++
T Consensus 61 ~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~i 133 (255)
T PRK06463 61 GNRD------QVKKSKEVVEKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLS-KNGAI 133 (255)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEE
Confidence 9876 444443 368999999987532 2345678999999976655444 332 34689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... + ....|+.||+..+.+++..+.. |++
T Consensus 134 v~isS~~~~~~~~---------~----------------------------~~~~Y~asKaa~~~~~~~la~e~~~~~i~ 176 (255)
T PRK06463 134 VNIASNAGIGTAA---------E----------------------------GTTFYAITKAGIIILTRRLAFELGKYGIR 176 (255)
T ss_pred EEEcCHHhCCCCC---------C----------------------------CccHhHHHHHHHHHHHHHHHHHhhhcCeE
Confidence 9999986542110 0 0146999999999998887652 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+++++||.|-.+....... . ............ ......+...+|+|++++.++..... ...+.++
T Consensus 177 v~~i~Pg~v~t~~~~~~~~---~-~~~~~~~~~~~~---------~~~~~~~~~~~~va~~~~~l~s~~~~--~~~G~~~ 241 (255)
T PRK06463 177 VNAVAPGWVETDMTLSGKS---Q-EEAEKLRELFRN---------KTVLKTTGKPEDIANIVLFLASDDAR--YITGQVI 241 (255)
T ss_pred EEEEeeCCCCCchhhcccC---c-cchHHHHHHHHh---------CCCcCCCcCHHHHHHHHHHHcChhhc--CCCCCEE
Confidence 9999999875442210000 0 000001111111 11123457789999999998765432 1146788
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+.++
T Consensus 242 ~~dgg 246 (255)
T PRK06463 242 VADGG 246 (255)
T ss_pred EECCC
Confidence 88776
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=136.44 Aligned_cols=220 Identities=12% Similarity=0.059 Sum_probs=144.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||++|||||+|.||+.++++|++. +.+|+++.|... +.+.+.. .....++.++.+|+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~--G~~vv~~~~~~~-----~~~~~~~--------------~~~~~~~~~~~~Dl 64 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKA--GADIVGVGVAEA-----PETQAQV--------------EALGRKFHFITADL 64 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEecCchH-----HHHHHHH--------------HHcCCeEEEEEeCC
Confidence 47899999999999999999999998 777888777431 1111111 11135788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc----CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM----IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~----~~lk~f 200 (762)
++++ +++.++ ..+|++||+|+.... .+.++..+++|+.|+..+.+.+... +.-.++
T Consensus 65 ~~~~------~~~~~~~~~~~~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~i 138 (251)
T PRK12481 65 IQQK------DIDSIVSQAVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKI 138 (251)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEE
Confidence 9876 455444 358999999997532 2456778999999999888877542 113589
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... . ...|+.||+..+.+++..+. .|++
T Consensus 139 i~isS~~~~~~~~----------~----------------------------~~~Y~asK~a~~~l~~~la~e~~~~gir 180 (251)
T PRK12481 139 INIASMLSFQGGI----------R----------------------------VPSYTASKSAVMGLTRALATELSQYNIN 180 (251)
T ss_pred EEeCChhhcCCCC----------C----------------------------CcchHHHHHHHHHHHHHHHHHHhhcCeE
Confidence 9999986543211 0 04699999999998887665 3899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+..++||.|-.+..... ............ . ++ ...+...+|+|+++..++...... ..+++.
T Consensus 181 vn~v~PG~v~t~~~~~~-------~~~~~~~~~~~~-~---~p-----~~~~~~peeva~~~~~L~s~~~~~--~~G~~i 242 (251)
T PRK12481 181 VNAIAPGYMATDNTAAL-------RADTARNEAILE-R---IP-----ASRWGTPDDLAGPAIFLSSSASDY--VTGYTL 242 (251)
T ss_pred EEEEecCCCccCchhhc-------ccChHHHHHHHh-c---CC-----CCCCcCHHHHHHHHHHHhCccccC--cCCceE
Confidence 99999998754421110 000011111111 1 11 123567899999999888643321 135666
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+.++
T Consensus 243 ~vdgg 247 (251)
T PRK12481 243 AVDGG 247 (251)
T ss_pred EECCC
Confidence 66544
|
|
| >cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21 | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-13 Score=127.10 Aligned_cols=101 Identities=20% Similarity=0.358 Sum_probs=79.6
Q ss_pred cccceeee-cCCCCeEEEEEEEE----EcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhh
Q psy7542 523 SVSGYRLI-ECEKPYYVYVIHVR----MFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKR 597 (762)
Q Consensus 523 ~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (762)
.|+..... +..+.|++|.|+|. .....|.|.||||||+.||. ++++
T Consensus 4 ~v~~~~~~~~~~~~yv~Y~I~v~~~~~~~~~~~~V~RRYSdF~~L~~-----------------------------~L~~ 54 (112)
T cd07301 4 EVTDANVVQDAHSKYVLYTIYVIQTGQYDPSPAYISRRYSDFERLHR-----------------------------RLRR 54 (112)
T ss_pred EECCCeEeccCCcCEEEEEEEEEecCCCCCCceEEEeehHhHHHHHH-----------------------------HHHH
Confidence 44444444 44588999999996 24567999999999999998 6666
Q ss_pred hchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-CCCChhHHHHHHHHHHHHHHHHHhc
Q psy7542 598 NCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-RSNQPKVLDERRHLLEIYLKEMFKF 676 (762)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (762)
.++. ....+.||+|++ .+++++++++||.+||.||+.+...
T Consensus 55 ~~~~--------------------------------------~~~~~~~P~K~~~~~~~~~~ie~Rr~~Le~fL~~i~~~ 96 (112)
T cd07301 55 LFGG--------------------------------------EMAGVSFPRKRLRKNFTAETIAKRSRAFEQFLCHLHSL 96 (112)
T ss_pred HCCC--------------------------------------cCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 6643 012357899996 5889999999999999999999988
Q ss_pred CCCh--HHHHhhhCCC
Q psy7542 677 GPSR--NQVLAFLGVN 690 (762)
Q Consensus 677 ~~~~--~~~~~~~~~~ 690 (762)
...+ ..+.+||.++
T Consensus 97 p~l~~s~~~~~FL~l~ 112 (112)
T cd07301 97 PELRASPAFLEFFYLR 112 (112)
T ss_pred HHHhcChHHHHHhCCC
Confidence 7666 8999999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development. |
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2e-12 Score=136.26 Aligned_cols=200 Identities=16% Similarity=0.187 Sum_probs=135.7
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++++|+||||+|+||..++++|++. +.+|+++.|+.. +++++.. .+ ....++.++.+|++
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~--G~~V~~~~r~~~------~~~~~~~-----~~-------~~~~~~~~~~~D~~ 63 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAA--GARLLLVGRNAE------KLEALAA-----RL-------PYPGRHRWVVADLT 63 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEECCHH------HHHHHHH-----HH-------hcCCceEEEEccCC
Confidence 6789999999999999999999998 678899998632 2222211 00 01247889999999
Q ss_pred CCCCCCCHHHHHhh------cCCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEE
Q psy7542 140 VPDLGISAEDRQML------SETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYV 203 (762)
Q Consensus 140 ~~~LGLs~~~l~~l------~~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~v 203 (762)
+++ ++..+ ...+|+|||+||..... +.+...+++|+.|+.++++.+... .+..++|++
T Consensus 64 d~~------~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~i 137 (263)
T PRK09072 64 SEA------GREAVLARAREMGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNV 137 (263)
T ss_pred CHH------HHHHHHHHHHhcCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 876 33333 24689999999976431 345668899999999999888642 234679999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~I 279 (762)
||..+.... + ....|+.||+..+.+++..+. .++.+++
T Consensus 138 sS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~ 179 (263)
T PRK09072 138 GSTFGSIGY----------P----------------------------GYASYCASKFALRGFSEALRRELADTGVRVLY 179 (263)
T ss_pred cChhhCcCC----------C----------------------------CccHHHHHHHHHHHHHHHHHHHhcccCcEEEE
Confidence 987543211 0 014799999988877766664 2788999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
+.||.+.++...+. . . ... ......+..++|+|++++.++.+..
T Consensus 180 v~Pg~~~t~~~~~~-----------------~-~---~~~--~~~~~~~~~~~~va~~i~~~~~~~~ 223 (263)
T PRK09072 180 LAPRATRTAMNSEA-----------------V-Q---ALN--RALGNAMDDPEDVAAAVLQAIEKER 223 (263)
T ss_pred EecCcccccchhhh-----------------c-c---ccc--ccccCCCCCHHHHHHHHHHHHhCCC
Confidence 99987644321100 0 0 000 0011246788999999999988653
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.5e-13 Score=138.68 Aligned_cols=162 Identities=15% Similarity=0.072 Sum_probs=118.4
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+||||||||+||+.++++|++. +.+|+++.|... .++++.. + ....++.++.+|++++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~--G~~V~~~~r~~~------~~~~~~~---------~----~~~~~~~~~~~D~~~~ 60 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAE--GWRVGAYDINEA------GLAALAA---------E----LGAGNAWTGALDVTDR 60 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHC--CCeEEEEeCCHH------HHHHHHH---------H----hcCCceEEEEecCCCH
Confidence 68999999999999999999998 678899988642 2222211 0 0124788999999986
Q ss_pred CCCCCHHHHHhh--------cCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEE
Q psy7542 142 DLGISAEDRQML--------SETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYV 203 (762)
Q Consensus 142 ~LGLs~~~l~~l--------~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~v 203 (762)
+ ++.++ ...+|+|||+|+.... .+.++..+++|+.|+.++++++... .+..++|++
T Consensus 61 ~------~v~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~i 134 (260)
T PRK08267 61 A------AWDAALADFAAATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINT 134 (260)
T ss_pred H------HHHHHHHHHHHHcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 5 34433 3357999999997542 1345678999999999999888531 234789999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~I 279 (762)
||..+..... ....|+.||+..+.+++..+. .++++++
T Consensus 135 sS~~~~~~~~--------------------------------------~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~ 176 (260)
T PRK08267 135 SSASAIYGQP--------------------------------------GLAVYSATKFAVRGLTEALDLEWRRHGIRVAD 176 (260)
T ss_pred CchhhCcCCC--------------------------------------CchhhHHHHHHHHHHHHHHHHHhcccCcEEEE
Confidence 9975432211 015799999999988888764 2899999
Q ss_pred EeeeeeccC
Q psy7542 280 LRPSIIIPI 288 (762)
Q Consensus 280 vRPs~V~G~ 288 (762)
++||.+..+
T Consensus 177 i~pg~~~t~ 185 (260)
T PRK08267 177 VMPLFVDTA 185 (260)
T ss_pred EecCCcCCc
Confidence 999987554
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.6e-13 Score=138.11 Aligned_cols=220 Identities=16% Similarity=0.063 Sum_probs=143.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++|+||||+|+||++++++|++. +.+|+++.|.. ++++++.. .++ ....++.++.+|+
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~--G~~Vi~~~r~~------~~~~~~~~-----~l~------~~~~~~~~~~~D~ 67 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQA--GAKVVLASRRV------ERLKELRA-----EIE------AEGGAAHVVSLDV 67 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HHH------hcCCcEEEEEecC
Confidence 47899999999999999999999998 67899999863 22332211 111 1124688999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CC-----
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IH----- 196 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~----- 196 (762)
++++ ++..+++ .+|+|||+|+.... .+.++..+++|+.|+..+++.+... ..
T Consensus 68 ~~~~------~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 141 (258)
T PRK06949 68 TDYQ------SIKAAVAHAETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGN 141 (258)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCC
Confidence 9865 4544433 58999999996432 1345678899999999998877531 01
Q ss_pred ---ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc
Q psy7542 197 ---LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA 273 (762)
Q Consensus 197 ---lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~ 273 (762)
..++|++||..+.... + ..+.|+.+|+..|.+++..+..
T Consensus 142 ~~~~g~iv~~sS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~~ 183 (258)
T PRK06949 142 TKPGGRIINIASVAGLRVL----------P----------------------------QIGLYCMSKAAVVHMTRAMALE 183 (258)
T ss_pred CCCCeEEEEECcccccCCC----------C----------------------------CccHHHHHHHHHHHHHHHHHHH
Confidence 2589999998653211 0 1157999999999988876652
Q ss_pred ----CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCC
Q psy7542 274 ----GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNP 349 (762)
Q Consensus 274 ----glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~ 349 (762)
++++++++||.|.++..... | .. ..... ..+.. ....+...+|+++++..++......
T Consensus 184 ~~~~~i~v~~v~pG~v~t~~~~~~--~-----~~-~~~~~-~~~~~--------~~~~~~~p~~~~~~~~~l~~~~~~~- 245 (258)
T PRK06949 184 WGRHGINVNAICPGYIDTEINHHH--W-----ET-EQGQK-LVSML--------PRKRVGKPEDLDGLLLLLAADESQF- 245 (258)
T ss_pred HHhcCeEEEEEeeCCCcCCcchhc--c-----Ch-HHHHH-HHhcC--------CCCCCcCHHHHHHHHHHHhChhhcC-
Confidence 89999999999987643211 1 10 10011 11110 1124556788999988887643321
Q ss_pred CCCceEEEecC
Q psy7542 350 GNTMRVINLTA 360 (762)
Q Consensus 350 ~~~~~iyNi~s 360 (762)
..+.+..+.+
T Consensus 246 -~~G~~i~~dg 255 (258)
T PRK06949 246 -INGAIISADD 255 (258)
T ss_pred -CCCcEEEeCC
Confidence 1345554443
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-12 Score=134.21 Aligned_cols=223 Identities=13% Similarity=0.057 Sum_probs=145.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++|+||||+|+||++++++|++. +.+|+++.|..+. .+++.+.+ .....++..+.+|+
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~--G~~v~~~~r~~~~---~~~~~~~~--------------~~~~~~~~~~~~D~ 65 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFARE--GAKVVVADRDAAG---GEETVALI--------------REAGGEALFVACDV 65 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHHH---HHHHHHHH--------------HhcCCceEEEEcCC
Confidence 47899999999999999999999998 6688999886432 11221111 11235788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHH-c--CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQ-M--IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~-~--~~lk~f 200 (762)
++++ ++..++ ..+|+|||+|+.... .+.+...+++|+.++..+++.+.. + .+..++
T Consensus 66 ~~~~------~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~i 139 (253)
T PRK06172 66 TRDA------EVKALVEQTIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAI 139 (253)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEE
Confidence 9865 444433 357999999986421 134566789999999877765432 1 234689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... . ...|+.||+..|.+++..+.. |+.
T Consensus 140 i~~sS~~~~~~~~----------~----------------------------~~~Y~~sKaa~~~~~~~la~e~~~~~i~ 181 (253)
T PRK06172 140 VNTASVAGLGAAP----------K----------------------------MSIYAASKHAVIGLTKSAAIEYAKKGIR 181 (253)
T ss_pred EEECchhhccCCC----------C----------------------------CchhHHHHHHHHHHHHHHHHHhcccCeE
Confidence 9999975433211 0 157999999999988887652 799
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+.++.||.|-.+..++.+. ......... ... .....+...+|+++.++.++..... ...++++
T Consensus 182 v~~i~PG~v~t~~~~~~~~------~~~~~~~~~-~~~--------~~~~~~~~p~~ia~~~~~l~~~~~~--~~~G~~i 244 (253)
T PRK06172 182 VNAVCPAVIDTDMFRRAYE------ADPRKAEFA-AAM--------HPVGRIGKVEEVASAVLYLCSDGAS--FTTGHAL 244 (253)
T ss_pred EEEEEeCCccChhhhhhcc------cChHHHHHH-hcc--------CCCCCccCHHHHHHHHHHHhCcccc--CcCCcEE
Confidence 9999999885553222110 011111111 111 0112356789999999888875432 1246777
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 245 ~~dgg 249 (253)
T PRK06172 245 MVDGG 249 (253)
T ss_pred EECCC
Confidence 77765
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=143.44 Aligned_cols=203 Identities=16% Similarity=0.176 Sum_probs=135.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++|+||||||+||++++++|++. +.+|+++.|.. ++++++.+ .+ .....++.++.+|+
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~--G~~Vvl~~R~~------~~l~~~~~-----~l------~~~g~~~~~v~~Dv 66 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARR--GAKVVLLARGE------EGLEALAA-----EI------RAAGGEALAVVADV 66 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HH------HHcCCcEEEEEecC
Confidence 47889999999999999999999998 67889998863 22322211 11 11235788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++.++ ..+|++||+|+...+. +.++..+++|+.|+.++.+.+... .+..+||
T Consensus 67 ~d~~------~v~~~~~~~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV 140 (334)
T PRK07109 67 ADAE------AVQAAADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAII 140 (334)
T ss_pred CCHH------HHHHHHHHHHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9876 454443 3689999999965321 345667889988877765555431 1347899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----c--CC
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----A--GM 275 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~--gl 275 (762)
++||..+..... . ...|+.||+..+.+.+..+. . ++
T Consensus 141 ~isS~~~~~~~~----------~----------------------------~~~Y~asK~a~~~~~~~l~~el~~~~~~I 182 (334)
T PRK07109 141 QVGSALAYRSIP----------L----------------------------QSAYCAAKHAIRGFTDSLRCELLHDGSPV 182 (334)
T ss_pred EeCChhhccCCC----------c----------------------------chHHHHHHHHHHHHHHHHHHHHhhcCCCe
Confidence 999986643211 0 15799999988887766543 1 68
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF 345 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~ 345 (762)
.+++++||.|..+.. .|..+ .. +. .......+...+|+|++++.++.++
T Consensus 183 ~v~~v~Pg~v~T~~~----~~~~~----------~~-~~------~~~~~~~~~~pe~vA~~i~~~~~~~ 231 (334)
T PRK07109 183 SVTMVQPPAVNTPQF----DWARS----------RL-PV------EPQPVPPIYQPEVVADAILYAAEHP 231 (334)
T ss_pred EEEEEeCCCccCchh----hhhhh----------hc-cc------cccCCCCCCCHHHHHHHHHHHHhCC
Confidence 999999998754321 11100 00 00 0111234678999999999998765
|
|
| >cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35 | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-13 Score=128.17 Aligned_cols=103 Identities=21% Similarity=0.279 Sum_probs=83.0
Q ss_pred cccccceeeecC---CCCeEEEEEEEEEcC---eEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHH
Q psy7542 521 CISVSGYRLIEC---EKPYYVYVIHVRMFQ---QHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQ 594 (762)
Q Consensus 521 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (762)
.|.|+++..+.. .++|+||.|+|.... +.|.|.||||||..||+ +
T Consensus 4 ~i~i~~~~~~~~~~~~~~yv~Y~I~v~~~~~~~~~~~V~RRYseF~~L~~-----------------------------~ 54 (120)
T cd07280 4 DVNVGDYTIVGGDTGGGAYVVWKITIETKDLIGSSIVAYKRYSEFVQLRE-----------------------------A 54 (120)
T ss_pred EEEcCCCeEECCCCCCCCEEEEEEEEEeCCCCCCcEEEEeeHHHHHHHHH-----------------------------H
Confidence 477888888855 499999999998775 89999999999999998 6
Q ss_pred HhhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC-----CCChhHHHHHHHHHHHH
Q psy7542 595 KKRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR-----SNQPKVLDERRHLLEIY 669 (762)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 669 (762)
++..+.. .+ ....|.||+|++. +.+++++|+||.+||.|
T Consensus 55 L~~~~p~----------------~~--------------------~~~~P~lP~K~~~~~~~~~~~~~~ie~Rr~~Le~f 98 (120)
T cd07280 55 LLDEFPR----------------HK--------------------RNEIPQLPPKVPWYDSRVNLNKAWLEKRRRGLQYF 98 (120)
T ss_pred HHHHCcc----------------cc--------------------cCcCCCCCCCcccccccccCCHHHHHHHHHHHHHH
Confidence 6666532 00 1147899999864 57899999999999999
Q ss_pred HHHHHhcCCCh--HHHHhhhC
Q psy7542 670 LKEMFKFGPSR--NQVLAFLG 688 (762)
Q Consensus 670 ~~~~~~~~~~~--~~~~~~~~ 688 (762)
|+.++....-+ ..|.+||.
T Consensus 99 L~~l~~~p~l~~s~~~~~FL~ 119 (120)
T cd07280 99 LNCVLLNPVFGGSPVVKEFLL 119 (120)
T ss_pred HHHHhCCHhhccChHHHHhhC
Confidence 99999755444 78888885
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway. |
| >cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20 | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-13 Score=126.37 Aligned_cols=102 Identities=25% Similarity=0.367 Sum_probs=80.4
Q ss_pred ccccceeeecC-CCCeEEEEEEEEE-c---CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHh
Q psy7542 522 ISVSGYRLIEC-EKPYYVYVIHVRM-F---QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKK 596 (762)
Q Consensus 522 ~~~~~~~~~~~-~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (762)
+.+++++.+++ .++|++|.|+|.. + ...|.|.||||||..||. +++
T Consensus 3 ~~i~~~~~~~~~~~~yv~Y~i~~~~~g~~~~~~~~v~RRYSdF~~L~~-----------------------------~L~ 53 (114)
T cd07300 3 FEIPSARIIEQTISKHVVYQIIVIQTGSFDCNKVVIERRYSDFLKLHQ-----------------------------ELL 53 (114)
T ss_pred EEecCceeeccCCcceEEEEEEEEEecCccCceEEEEeccHhHHHHHH-----------------------------HHH
Confidence 45666776655 4789999998743 2 458999999999999998 454
Q ss_pred hhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-CCCChhHHHHHHHHHHHHHHHHHh
Q psy7542 597 RNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-RSNQPKVLDERRHLLEIYLKEMFK 675 (762)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 675 (762)
+.++. ....|.||+|++ .+++++++++||++||.||+.+.+
T Consensus 54 ~~~~~--------------------------------------~~~~~~lP~K~~~~~~~~~~ie~Rr~~Le~yL~~l~~ 95 (114)
T cd07300 54 SDFSE--------------------------------------ELEDVVFPKKKLTGNFSEEIIAERRVALRDYLTLLYS 95 (114)
T ss_pred HHccc--------------------------------------cCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 44421 114677999996 789999999999999999999998
Q ss_pred cCCCh--HHHHhhhCCC
Q psy7542 676 FGPSR--NQVLAFLGVN 690 (762)
Q Consensus 676 ~~~~~--~~~~~~~~~~ 690 (762)
...-+ ..+.+||..+
T Consensus 96 ~p~l~~s~~~~~FL~~~ 112 (114)
T cd07300 96 LRFVRRSQAFQDFLTHP 112 (114)
T ss_pred CHhhhcChHHHHHhCCc
Confidence 87655 8999999765
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom |
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=138.18 Aligned_cols=209 Identities=17% Similarity=0.157 Sum_probs=136.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcch-HHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNS-RERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~-~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++++++||||+|+||++++++|++. +.+|+++.|....... ...+++.. +.++ ....++.++.+|
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~------~~~~~~~~~~~D 70 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARD--GANIVIAAKTAEPHPKLPGTIHTAA-----EEIE------AAGGQALPLVGD 70 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEecccccccchhhHHHHHH-----HHHH------hcCCceEEEEec
Confidence 47899999999999999999999998 6788999987543211 11122211 1111 123468899999
Q ss_pred cCCCCCCCCHHHHHhhc-------CCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 138 VAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
+++++ ++..++ .++|+|||+||..... +.+...+++|+.|+.++++++... .+-.++
T Consensus 71 ~~~~~------~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~i 144 (273)
T PRK08278 71 VRDED------QVAAAVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHI 144 (273)
T ss_pred CCCHH------HHHHHHHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEE
Confidence 99876 444433 3689999999975321 235668899999999999999742 122478
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+.... +..+ ...|+.||+..|.+++.++.. ++.
T Consensus 145 v~iss~~~~~~~-------~~~~-----------------------------~~~Y~~sK~a~~~~~~~la~el~~~~I~ 188 (273)
T PRK08278 145 LTLSPPLNLDPK-------WFAP-----------------------------HTAYTMAKYGMSLCTLGLAEEFRDDGIA 188 (273)
T ss_pred EEECCchhcccc-------ccCC-----------------------------cchhHHHHHHHHHHHHHHHHHhhhcCcE
Confidence 888875321100 0000 157999999999999887663 799
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
++.+.|+.++.+. .......+ ......+...+++|++++.++....
T Consensus 189 v~~i~Pg~~i~t~----------------~~~~~~~~--------~~~~~~~~~p~~va~~~~~l~~~~~ 234 (273)
T PRK08278 189 VNALWPRTTIATA----------------AVRNLLGG--------DEAMRRSRTPEIMADAAYEILSRPA 234 (273)
T ss_pred EEEEeCCCccccH----------------HHHhcccc--------cccccccCCHHHHHHHHHHHhcCcc
Confidence 9999998322210 00000000 0111236788999999999887543
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-12 Score=134.64 Aligned_cols=219 Identities=12% Similarity=0.048 Sum_probs=138.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++|++|+||||||+||++++++|++. +.+|+++.|... ++++..+ . -+..++.+|+
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~--G~~v~~~~r~~~------~~~~~~~--------------~--~~~~~~~~D~ 60 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAE--GATVVVGDIDPE------AGKAAAD--------------E--VGGLFVPTDV 60 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHH------HHHHHHH--------------H--cCCcEEEeeC
Confidence 57899999999999999999999998 678888888532 1111110 0 0125788999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCcc---------ccHHHHHHHhHHHHHHHHHHHHH-c--CCccE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRFD---------DYMQTYVFLNTRGTRDMLNLSKQ-M--IHLQL 199 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f~---------~~l~~~~~~NV~GT~~LLelA~~-~--~~lk~ 199 (762)
++++ +++++++ .+|+|||+|+..... +.++..+++|+.|+..+++.+.. + .+..+
T Consensus 61 ~~~~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~ 134 (255)
T PRK06057 61 TDED------AVNALFDTAAETYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGS 134 (255)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcE
Confidence 9865 4444443 579999999875321 23567899999999888777642 1 13458
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHH----HHHcCC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTE----YMEAGM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~----~~~~gl 275 (762)
+|++||..+..... . ....|+.||+..+.+++. +...|+
T Consensus 135 iv~~sS~~~~~g~~--------~-----------------------------~~~~Y~~sKaal~~~~~~l~~~~~~~gi 177 (255)
T PRK06057 135 IINTASFVAVMGSA--------T-----------------------------SQISYTASKGGVLAMSRELGVQFARQGI 177 (255)
T ss_pred EEEEcchhhccCCC--------C-----------------------------CCcchHHHHHHHHHHHHHHHHHHHhhCc
Confidence 99999864321110 0 014799999766666554 433489
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
.++++|||.|.++...+. +. ..+....... ..++ ...+..++++++++..++...... ..+..
T Consensus 178 ~v~~i~pg~v~t~~~~~~--~~---~~~~~~~~~~-----~~~~-----~~~~~~~~~~a~~~~~l~~~~~~~--~~g~~ 240 (255)
T PRK06057 178 RVNALCPGPVNTPLLQEL--FA---KDPERAARRL-----VHVP-----MGRFAEPEEIAAAVAFLASDDASF--ITAST 240 (255)
T ss_pred EEEEEeeCCcCCchhhhh--cc---CCHHHHHHHH-----hcCC-----CCCCcCHHHHHHHHHHHhCccccC--ccCcE
Confidence 999999999876643211 00 0111111100 0111 125788999999988777654331 13566
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+.+.++
T Consensus 241 ~~~~~g 246 (255)
T PRK06057 241 FLVDGG 246 (255)
T ss_pred EEECCC
Confidence 666554
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=136.71 Aligned_cols=225 Identities=13% Similarity=0.098 Sum_probs=140.5
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+++||||+|+||.+++++|++. +.+|+++.|... +++++.+ .+ .....++..+.+|++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~--G~~v~~~~r~~~------~~~~~~~-----~l------~~~~~~~~~~~~Dl~~~ 61 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKD--GFAVAVADLNEE------TAKETAK-----EI------NQAGGKAVAYKLDVSDK 61 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH-----HH------HhcCCeEEEEEcCCCCH
Confidence 57999999999999999999988 678888888632 2222111 01 11134688999999987
Q ss_pred CCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH----cCCccEEEEE
Q psy7542 142 DLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ----MIHLQLFVYV 203 (762)
Q Consensus 142 ~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~----~~~lk~fV~v 203 (762)
+ ++.+++ ..+|+|||+|+.... .+.++..+++|+.|+..+++++.. .+...++|++
T Consensus 62 ~------~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~ 135 (254)
T TIGR02415 62 D------QVFSAIDQAAEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINA 135 (254)
T ss_pred H------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 6 444433 357999999987532 134556899999999888776653 2223689999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~I 279 (762)
||..+..... . .+.|+.+|+..|.+++..+.. ++.+++
T Consensus 136 sS~~~~~~~~----------~----------------------------~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~ 177 (254)
T TIGR02415 136 ASIAGHEGNP----------I----------------------------LSAYSSTKFAVRGLTQTAAQELAPKGITVNA 177 (254)
T ss_pred cchhhcCCCC----------C----------------------------CcchHHHHHHHHHHHHHHHHHhcccCeEEEE
Confidence 9975432111 0 167999999999999876542 799999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCC-c-hHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNING-P-TGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~g-p-~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
++||.+..+.............+ + ......... ......++.++|+++++..++...... ..+.++.
T Consensus 178 v~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~a~~~~~l~~~~~~~--~~g~~~~ 246 (254)
T TIGR02415 178 YCPGIVKTPMWEEIDEETSEIAGKPIGEGFEEFSS---------EIALGRPSEPEDVAGLVSFLASEDSDY--ITGQSIL 246 (254)
T ss_pred EecCcccChhhhhhhhhhhhcccCchHHHHHHHHh---------hCCCCCCCCHHHHHHHHHhhcccccCC--ccCcEEE
Confidence 99998755432111100000000 0 000000000 011123788899999999888765431 1344554
Q ss_pred ecC
Q psy7542 358 LTA 360 (762)
Q Consensus 358 i~s 360 (762)
+.+
T Consensus 247 ~d~ 249 (254)
T TIGR02415 247 VDG 249 (254)
T ss_pred ecC
Confidence 444
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.4e-12 Score=134.80 Aligned_cols=227 Identities=12% Similarity=0.055 Sum_probs=146.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.+|+++||||+|+||++++++|++. +.+|+++.|... ++++..+ .+ .....++.++.+|+
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~--G~~vv~~~~~~~------~~~~~~~-----~~------~~~~~~~~~~~~Dl 68 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKA--GATIVFNDINQE------LVDKGLA-----AY------RELGIEAHGYVCDV 68 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC--CCeEEEEeCCHH------HHHHHHH-----HH------HhcCCceEEEEcCC
Confidence 36899999999999999999999998 677888877532 2222111 11 11124788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++.++ ..+|+|||+||.... .+.+...+++|+.|+..+++.+... .+..+||
T Consensus 69 ~~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv 142 (265)
T PRK07097 69 TDED------GVQAMVSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKII 142 (265)
T ss_pred CCHH------HHHHHHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9876 444433 358999999997542 2345668899999999888776531 2457899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+..... ....|+.+|+..+.+++.++.. |+.+
T Consensus 143 ~isS~~~~~~~~--------------------------------------~~~~Y~~sKaal~~l~~~la~e~~~~gi~v 184 (265)
T PRK07097 143 NICSMMSELGRE--------------------------------------TVSAYAAAKGGLKMLTKNIASEYGEANIQC 184 (265)
T ss_pred EEcCccccCCCC--------------------------------------CCccHHHHHHHHHHHHHHHHHHhhhcCceE
Confidence 999975422110 0157999999999999888763 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCC-chHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNING-PTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~g-p~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+.++||.|..+...+...- ...+ ...+...+.. . .....+...+|+|++++.++..... ...+.++
T Consensus 185 ~~v~Pg~v~t~~~~~~~~~--~~~~~~~~~~~~~~~-~--------~~~~~~~~~~dva~~~~~l~~~~~~--~~~g~~~ 251 (265)
T PRK07097 185 NGIGPGYIATPQTAPLREL--QADGSRHPFDQFIIA-K--------TPAARWGDPEDLAGPAVFLASDASN--FVNGHIL 251 (265)
T ss_pred EEEEeccccccchhhhhhc--cccccchhHHHHHHh-c--------CCccCCcCHHHHHHHHHHHhCcccC--CCCCCEE
Confidence 9999999877643321100 0000 0011111111 0 0112356789999999998875322 1135677
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+.++
T Consensus 252 ~~~gg 256 (265)
T PRK07097 252 YVDGG 256 (265)
T ss_pred EECCC
Confidence 77665
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.8e-12 Score=132.47 Aligned_cols=221 Identities=14% Similarity=0.085 Sum_probs=142.4
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
||+++||||+|+||+++++.|++. +.+|+++.|... +++++.+ .++ ....++.++.+|+++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~--G~~Vi~~~r~~~------~~~~~~~-----~~~------~~~~~~~~~~~D~~~ 61 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEE--GANVVITGRTKE------KLEEAKL-----EIE------QFPGQVLTVQMDVRN 61 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH-----HHH------hcCCcEEEEEecCCC
Confidence 589999999999999999999998 678899988642 2222110 011 112578899999998
Q ss_pred CCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CC-ccEEEE
Q psy7542 141 PDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IH-LQLFVY 202 (762)
Q Consensus 141 ~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~-lk~fV~ 202 (762)
++ ++++++ ..+|+|||+|+.... .+.++..+++|+.|+.++++++... .+ ..++|+
T Consensus 62 ~~------~~~~~~~~~~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~ 135 (252)
T PRK07677 62 PE------DVQKMVEQIDEKFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIIN 135 (252)
T ss_pred HH------HHHHHHHHHHHHhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 65 444433 368999999985321 1335678999999999999988532 12 368999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----c-CCCE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----A-GMPC 277 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~-glpv 277 (762)
+||.++..... ....|+.||+..+.+++..+. . |+++
T Consensus 136 isS~~~~~~~~--------------------------------------~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v 177 (252)
T PRK07677 136 MVATYAWDAGP--------------------------------------GVIHSAAAKAGVLAMTRTLAVEWGRKYGIRV 177 (252)
T ss_pred EcChhhccCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHhCcccCeEE
Confidence 99986532110 114699999998888876443 2 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
..++||.|.++.... ..| ........+.... ...-+...+|+++++..++..... ...+.++.
T Consensus 178 ~~v~PG~v~~~~~~~-~~~-----~~~~~~~~~~~~~---------~~~~~~~~~~va~~~~~l~~~~~~--~~~g~~~~ 240 (252)
T PRK07677 178 NAIAPGPIERTGGAD-KLW-----ESEEAAKRTIQSV---------PLGRLGTPEEIAGLAYFLLSDEAA--YINGTCIT 240 (252)
T ss_pred EEEeecccccccccc-ccc-----CCHHHHHHHhccC---------CCCCCCCHHHHHHHHHHHcCcccc--ccCCCEEE
Confidence 999999886432110 001 1111222222111 112366789999988887654322 12456677
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 241 ~~gg 244 (252)
T PRK07677 241 MDGG 244 (252)
T ss_pred ECCC
Confidence 6654
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=140.73 Aligned_cols=217 Identities=14% Similarity=0.092 Sum_probs=140.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+++||||+|+||++++++|++. +.+|++..|.... ..+.+.+ .++ ....++..+.+|+
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~--Ga~Vv~~~~~~~~--~~~~~~~--------~i~------~~g~~~~~~~~Dv 71 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARL--GATVVVNDVASAL--DASDVLD--------EIR------AAGAKAVAVAGDI 71 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEecCCchh--HHHHHHH--------HHH------hcCCeEEEEeCCC
Confidence 58999999999999999999999998 6777887775321 1111111 111 1135788999999
Q ss_pred CCCCCCCCHHHHHhhc------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-----C-----
Q psy7542 139 AVPDLGISAEDRQMLS------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-----I----- 195 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-----~----- 195 (762)
++++ ++..++ ..+|+|||+|+.... .+.++..+++|+.|+.++++++... .
T Consensus 72 ~d~~------~~~~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~ 145 (306)
T PRK07792 72 SQRA------TADELVATAVGLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGP 145 (306)
T ss_pred CCHH------HHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCC
Confidence 9875 344333 468999999997642 2346678999999999999887531 0
Q ss_pred CccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH---
Q psy7542 196 HLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME--- 272 (762)
Q Consensus 196 ~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~--- 272 (762)
.-.++|++||..+..... ....|+.+|+..+.+++.++.
T Consensus 146 ~~g~iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~l~~~la~e~~ 187 (306)
T PRK07792 146 VYGRIVNTSSEAGLVGPV--------------------------------------GQANYGAAKAGITALTLSAARALG 187 (306)
T ss_pred CCcEEEEECCcccccCCC--------------------------------------CCchHHHHHHHHHHHHHHHHHHhh
Confidence 014899999975432110 014799999999999887665
Q ss_pred -cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCC
Q psy7542 273 -AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGN 351 (762)
Q Consensus 273 -~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~ 351 (762)
.|+++..+.|+. .+ ++. ..... .. .... ....+.++.+++++++..++..... ..
T Consensus 188 ~~gI~vn~i~Pg~--~t---~~~---~~~~~----------~~-~~~~---~~~~~~~~pe~va~~v~~L~s~~~~--~~ 243 (306)
T PRK07792 188 RYGVRANAICPRA--RT---AMT---ADVFG----------DA-PDVE---AGGIDPLSPEHVVPLVQFLASPAAA--EV 243 (306)
T ss_pred hcCeEEEEECCCC--CC---chh---hhhcc----------cc-chhh---hhccCCCCHHHHHHHHHHHcCcccc--CC
Confidence 289999999973 11 100 00000 00 0000 0112346889999998887754322 11
Q ss_pred CceEEEecCC
Q psy7542 352 TMRVINLTAN 361 (762)
Q Consensus 352 ~~~iyNi~s~ 361 (762)
.+++|.+.++
T Consensus 244 tG~~~~v~gg 253 (306)
T PRK07792 244 NGQVFIVYGP 253 (306)
T ss_pred CCCEEEEcCC
Confidence 4677777655
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-12 Score=137.54 Aligned_cols=223 Identities=13% Similarity=0.075 Sum_probs=143.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++||||||+|+||.+++++|++. +.+|+++.|... ++++..+ .+ .....++.++.+|+
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~--G~~V~~~~r~~~------~~~~~~~-----~~------~~~~~~~~~~~~Dv 67 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARA--GANVAVASRSQE------KVDAAVA-----QL------QQAGPEGLGVSADV 67 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH-----HH------HHhCCceEEEECCC
Confidence 47899999999999999999999988 778899998642 1211100 00 11124678899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~ 202 (762)
++++ ++..++ ..+|+|||+|+.... .+.++..+++|+.|+.++++++... +.-.++|+
T Consensus 68 ~~~~------~i~~~~~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~ 141 (264)
T PRK07576 68 RDYA------AVEAAFAQIADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQ 141 (264)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEE
Confidence 9865 454443 357999999975321 2345667899999999999888642 11258999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~ 278 (762)
+||..+.... |. -..|+.||+..|.+++..+. .|++++
T Consensus 142 iss~~~~~~~----------~~----------------------------~~~Y~asK~a~~~l~~~la~e~~~~gi~v~ 183 (264)
T PRK07576 142 ISAPQAFVPM----------PM----------------------------QAHVCAAKAGVDMLTRTLALEWGPEGIRVN 183 (264)
T ss_pred ECChhhccCC----------CC----------------------------ccHHHHHHHHHHHHHHHHHHHhhhcCeEEE
Confidence 9997543211 10 15799999999999987755 279999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
.++||.+.++... ..+. +........... .....+....|+|++++.++..... ...+..+.+
T Consensus 184 ~v~pg~~~~t~~~--~~~~-----~~~~~~~~~~~~--------~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~~~ 246 (264)
T PRK07576 184 SIVPGPIAGTEGM--ARLA-----PSPELQAAVAQS--------VPLKRNGTKQDIANAALFLASDMAS--YITGVVLPV 246 (264)
T ss_pred EEecccccCcHHH--hhcc-----cCHHHHHHHHhc--------CCCCCCCCHHHHHHHHHHHcChhhc--CccCCEEEE
Confidence 9999987543110 0010 111111111111 1123467789999999998864322 113556666
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.++
T Consensus 247 ~gg 249 (264)
T PRK07576 247 DGG 249 (264)
T ss_pred CCC
Confidence 554
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.9e-12 Score=131.60 Aligned_cols=220 Identities=14% Similarity=0.072 Sum_probs=142.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+++||||+|.||++++++|++. +.+|+++.|... .+..+++. ....++..+.+|+
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~--G~~vv~~~~~~~----~~~~~~~~---------------~~~~~~~~~~~Dl 66 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEA--GCDIVGINIVEP----TETIEQVT---------------ALGRRFLSLTADL 66 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEecCcch----HHHHHHHH---------------hcCCeEEEEECCC
Confidence 57899999999999999999999998 677777666432 11111111 1124678899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CC-ccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IH-LQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~-lk~f 200 (762)
++++ ++..++ ..+|++||+||.... .+.+...+++|+.|+..+++++... .+ -.++
T Consensus 67 ~~~~------~~~~~~~~~~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~i 140 (253)
T PRK08993 67 RKID------GIPALLERAVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKI 140 (253)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEE
Confidence 9865 444443 358999999997542 1457778999999999999887542 11 2579
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... . -..|+.||+..|.+.+..+.. |+.
T Consensus 141 v~isS~~~~~~~~----------~----------------------------~~~Y~~sKaa~~~~~~~la~e~~~~gi~ 182 (253)
T PRK08993 141 INIASMLSFQGGI----------R----------------------------VPSYTASKSGVMGVTRLMANEWAKHNIN 182 (253)
T ss_pred EEECchhhccCCC----------C----------------------------CcchHHHHHHHHHHHHHHHHHhhhhCeE
Confidence 9999985543211 0 047999999998888777652 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
++.++||.|-.+..... ............ .. + ..-+...+|+|++++.++..... ...+.++
T Consensus 183 v~~v~pG~v~T~~~~~~-------~~~~~~~~~~~~-~~---p-----~~r~~~p~eva~~~~~l~s~~~~--~~~G~~~ 244 (253)
T PRK08993 183 VNAIAPGYMATNNTQQL-------RADEQRSAEILD-RI---P-----AGRWGLPSDLMGPVVFLASSASD--YINGYTI 244 (253)
T ss_pred EEEEeeCcccCcchhhh-------ccchHHHHHHHh-cC---C-----CCCCcCHHHHHHHHHHHhCcccc--CccCcEE
Confidence 99999998865432110 000011111111 11 1 12366789999999998865433 1135566
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+.++
T Consensus 245 ~~dgg 249 (253)
T PRK08993 245 AVDGG 249 (253)
T ss_pred EECCC
Confidence 65543
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-12 Score=133.46 Aligned_cols=209 Identities=16% Similarity=0.183 Sum_probs=133.3
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPD 142 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~ 142 (762)
+|+||||+|+||.++++.|++. +.+|+++.|.... ..+.+.+.+ ... .....+..+.+|+++++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~--G~~v~~~~r~~~~--~~~~~~~~~--------~~~----~~~~~~~~~~~D~~~~~ 64 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQ--GAKVFLTDINDAA--GLDAFAAEI--------NAA----HGEGVAFAAVQDVTDEA 64 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCcch--HHHHHHHHH--------Hhc----CCCceEEEEEeecCCHH
Confidence 3899999999999999999998 6788999986321 112222111 100 01123456889999865
Q ss_pred CCCCHHHHHhhc-------CCccEEEEcccccCcc-------ccHHHHHHHhHH----HHHHHHHHHHHcCCccEEEEEe
Q psy7542 143 LGISAEDRQMLS-------ETIHIVYHIAATVRFD-------DYMQTYVFLNTR----GTRDMLNLSKQMIHLQLFVYVS 204 (762)
Q Consensus 143 LGLs~~~l~~l~-------~~vDiViH~AA~v~f~-------~~l~~~~~~NV~----GT~~LLelA~~~~~lk~fV~vS 204 (762)
++.+++ ..+|+|||+|+..... +.+...+++|+. +++.+++++++. +.++||++|
T Consensus 65 ------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~ii~~s 137 (251)
T PRK07069 65 ------QWQALLAQAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRAS-QPASIVNIS 137 (251)
T ss_pred ------HHHHHHHHHHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-CCcEEEEec
Confidence 444433 4689999999976432 234567888988 777777777765 567999999
Q ss_pred CCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----c--CCCEE
Q psy7542 205 TAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----A--GMPCM 278 (762)
Q Consensus 205 Say~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~--glpv~ 278 (762)
|..+..... . ...|+.+|+..+.+++..+. . +++++
T Consensus 138 s~~~~~~~~----------~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~ 179 (251)
T PRK07069 138 SVAAFKAEP----------D----------------------------YTAYNASKAAVASLTKSIALDCARRGLDVRCN 179 (251)
T ss_pred ChhhccCCC----------C----------------------------CchhHHHHHHHHHHHHHHHHHhcccCCcEEEE
Confidence 986543211 0 14799999999998887654 2 48889
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF 345 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~ 345 (762)
.++||.+.++...+... . .........+..+. ....+..++|+|++++.++...
T Consensus 180 ~v~pg~v~t~~~~~~~~---~-~~~~~~~~~~~~~~---------~~~~~~~~~~va~~~~~l~~~~ 233 (251)
T PRK07069 180 SIHPTFIRTGIVDPIFQ---R-LGEEEATRKLARGV---------PLGRLGEPDDVAHAVLYLASDE 233 (251)
T ss_pred EEeecccCCcchhHHhh---h-ccchhHHHHHhccC---------CCCCCcCHHHHHHHHHHHcCcc
Confidence 99999887764322100 0 01111111111111 1123567899999998876543
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4e-12 Score=136.95 Aligned_cols=210 Identities=14% Similarity=0.038 Sum_probs=140.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++|++|+||||+|.||.++++.|++. |.+|+++.|.. ++++++.+ +. . ...++..+.+|+
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~l~~~~~---------~l--~-~~~~~~~~~~Dv 66 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHAR--GAKLALVDLEE------AELAALAA---------EL--G-GDDRVLTVVADV 66 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH---------Hh--c-CCCcEEEEEecC
Confidence 47899999999999999999999998 67889998853 23332211 00 1 124566778999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~ 202 (762)
++++ +++.++ ..+|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|+
T Consensus 67 ~d~~------~v~~~~~~~~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~ 140 (296)
T PRK05872 67 TDLA------AMQAAAEEAVERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQ 140 (296)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEE
Confidence 9865 444332 468999999997542 2346678999999999999988642 12358999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~ 278 (762)
+||..+..... . ...|+.||+..+.+++..+. .|+.++
T Consensus 141 isS~~~~~~~~----------~----------------------------~~~Y~asKaal~~~~~~l~~e~~~~gi~v~ 182 (296)
T PRK05872 141 VSSLAAFAAAP----------G----------------------------MAAYCASKAGVEAFANALRLEVAHHGVTVG 182 (296)
T ss_pred EeCHhhcCCCC----------C----------------------------chHHHHHHHHHHHHHHHHHHHHHHHCcEEE
Confidence 99986543211 0 14799999999999887654 389999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
++.||.|..+..... ............ ..+ .....+++.+|+|++++.++....
T Consensus 183 ~v~Pg~v~T~~~~~~-------~~~~~~~~~~~~-~~~------~p~~~~~~~~~va~~i~~~~~~~~ 236 (296)
T PRK05872 183 SAYLSWIDTDLVRDA-------DADLPAFRELRA-RLP------WPLRRTTSVEKCAAAFVDGIERRA 236 (296)
T ss_pred EEecCcccchhhhhc-------cccchhHHHHHh-hCC------CcccCCCCHHHHHHHHHHHHhcCC
Confidence 999998755432110 000011111111 110 112346789999999999887644
|
|
| >cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-13 Score=123.75 Aligned_cols=99 Identities=26% Similarity=0.462 Sum_probs=82.0
Q ss_pred ccccceeeecCCCCeEEEEEEEEEcC--eEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhc
Q psy7542 522 ISVSGYRLIECEKPYYVYVIHVRMFQ--QHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNC 599 (762)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (762)
|+|-|++.......|+||.|.|...+ .+|.|.||||||..+|. ++++.+
T Consensus 2 ~~i~~~~~~~~~~~~~vY~I~V~~~~~~~~~~V~RRYseF~~Lh~-----------------------------~L~~~f 52 (109)
T cd06883 2 VSVFGFQKRYSPEKYYIYVVKVTRENQTEPSFVFRTFEEFQELHN-----------------------------KLSLLF 52 (109)
T ss_pred cEEEEEEEEecCCceEEEEEEEEECCCCCeEEEEecHHHHHHHHH-----------------------------HHHHHC
Confidence 56778887777788999999998865 68999999999999998 666655
Q ss_pred hhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC--CCChhHHHHHHHHHHHHHHHHHhcC
Q psy7542 600 KYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR--SNQPKVLDERRHLLEIYLKEMFKFG 677 (762)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (762)
. ....|.||+|++. ++++.++++||.+||.||+.+++..
T Consensus 53 p---------------------------------------~~~lp~lP~k~~~~~~~~~~~~e~R~~~Le~YL~~Ll~~~ 93 (109)
T cd06883 53 P---------------------------------------SLKLPSFPARVVLGRSHIKQVAERRKIELNSYLKSLFNAS 93 (109)
T ss_pred C---------------------------------------CCcCCCCCCCcccCccchhHHHHHHHHHHHHHHHHHHcCC
Confidence 2 2267899999973 4568999999999999999999886
Q ss_pred CCh---HHHHhhhC
Q psy7542 678 PSR---NQVLAFLG 688 (762)
Q Consensus 678 ~~~---~~~~~~~~ 688 (762)
+.. ..|.+||.
T Consensus 94 ~~i~~s~~v~~F~~ 107 (109)
T cd06883 94 PEVAESDLVYTFFH 107 (109)
T ss_pred HHHhcCHHHHHhcC
Confidence 433 79999984
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d |
| >cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13 | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-13 Score=126.22 Aligned_cols=99 Identities=29% Similarity=0.438 Sum_probs=78.8
Q ss_pred ccccceeee-cCCCCeEEEEEEEEE-----cCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHH
Q psy7542 522 ISVSGYRLI-ECEKPYYVYVIHVRM-----FQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQK 595 (762)
Q Consensus 522 ~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (762)
.+|+.++.. +.+++|++|.|+|.. ....|.|.||||||..||. ++
T Consensus 7 ~~i~~~~~~~~~~~~y~~Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~-----------------------------~L 57 (120)
T cd06873 7 AVIINTGIVKEHGKTYAVYAISVTRIYPNGQEESWHVYRRYSDFHDLHM-----------------------------RL 57 (120)
T ss_pred EEEeccEEEccCCceEEEEEEEEEEecCCCCccceEEEeehHHHHHHHH-----------------------------HH
Confidence 345555554 446899999999986 3468999999999999998 77
Q ss_pred hhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-CCCChhHHHHHHHHHHHHHHHHH
Q psy7542 596 KRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-RSNQPKVLDERRHLLEIYLKEMF 674 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 674 (762)
++.+.. ...|.||+|++ .+.+++++++||.+||.||+.++
T Consensus 58 ~~~~p~---------------------------------------~~~~~lP~K~~~~~~~~~~ie~Rr~~Le~fL~~ll 98 (120)
T cd06873 58 KEKFPN---------------------------------------LSKLSFPGKKTFNNLDRAFLEKRRKMLNQYLQSLL 98 (120)
T ss_pred HHHCcC---------------------------------------CCCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 776632 24678999986 56679999999999999999999
Q ss_pred hcCCCh------HHHHhhhC
Q psy7542 675 KFGPSR------NQVLAFLG 688 (762)
Q Consensus 675 ~~~~~~------~~~~~~~~ 688 (762)
+....+ +.+.+||.
T Consensus 99 ~~~~l~~~~~~~~~l~~FL~ 118 (120)
T cd06873 99 NPEVLDANPGLQEIVLDFLE 118 (120)
T ss_pred CCHhhccCHHHHHHHHHHcC
Confidence 776533 68889986
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug |
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-12 Score=137.08 Aligned_cols=159 Identities=15% Similarity=0.171 Sum_probs=116.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|+||||||+||++++++|++. +.+|+++.|... +++++. ..++..+.+|++++
T Consensus 2 k~vlItGasggiG~~la~~l~~~--G~~V~~~~r~~~------~~~~~~-----------------~~~~~~~~~Dl~~~ 56 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAA--GYEVWATARKAE------DVEALA-----------------AAGFTAVQLDVNDG 56 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHH-----------------HCCCeEEEeeCCCH
Confidence 68999999999999999999988 778899988632 222211 12467889999986
Q ss_pred CCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEEEeC
Q psy7542 142 DLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVYVST 205 (762)
Q Consensus 142 ~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~vSS 205 (762)
+ ++++++ .++|+|||+|+.... .+.++..+++|+.|+.++++.+... .+..++|++||
T Consensus 57 ~------~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS 130 (274)
T PRK05693 57 A------ALARLAEELEAEHGGLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGS 130 (274)
T ss_pred H------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 5 444433 468999999996532 1345678999999999999887542 13367999999
Q ss_pred CcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEe
Q psy7542 206 AYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILR 281 (762)
Q Consensus 206 ay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvR 281 (762)
..+.... | ....|+.||+..+.+++..+. .|+++++++
T Consensus 131 ~~~~~~~----------~----------------------------~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~ 172 (274)
T PRK05693 131 VSGVLVT----------P----------------------------FAGAYCASKAAVHALSDALRLELAPFGVQVMEVQ 172 (274)
T ss_pred ccccCCC----------C----------------------------CccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEe
Confidence 7653211 1 015799999998888766554 289999999
Q ss_pred eeeeccCC
Q psy7542 282 PSIIIPIW 289 (762)
Q Consensus 282 Ps~V~G~~ 289 (762)
||.|..+.
T Consensus 173 pg~v~t~~ 180 (274)
T PRK05693 173 PGAIASQF 180 (274)
T ss_pred cCcccccc
Confidence 99986653
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-11 Score=127.14 Aligned_cols=213 Identities=16% Similarity=0.094 Sum_probs=146.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.++|.|+|||||+.||.++++.|.+. |.+|++..|+. +||+++.+ +. . ..++.++..|+
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~--G~~vvl~aRR~------drL~~la~---------~~--~--~~~~~~~~~DV 62 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEA--GAKVVLAARRE------ERLEALAD---------EI--G--AGAALALALDV 62 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHC--CCeEEEEeccH------HHHHHHHH---------hh--c--cCceEEEeecc
Confidence 46799999999999999999999999 78999999963 67776643 11 1 15788999999
Q ss_pred CCCCC-CCCHHHHHhhcCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEEeCCc
Q psy7542 139 AVPDL-GISAEDRQMLSETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVSTAY 207 (762)
Q Consensus 139 ~~~~L-GLs~~~l~~l~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vSSay 207 (762)
+|+.- ----+.+..-..++|++||+||.... .+.|+.++++|+.|..+..++..-. .+-.++|.+||..
T Consensus 63 tD~~~~~~~i~~~~~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiA 142 (246)
T COG4221 63 TDRAAVEAAIEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIA 142 (246)
T ss_pred CCHHHHHHHHHHHHHhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccc
Confidence 99760 00001122333469999999998643 2567889999999999988887521 2345899999986
Q ss_pred ccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEeee
Q psy7542 208 CHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILRPS 283 (762)
Q Consensus 208 ~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvRPs 283 (762)
+.-.. | +-+.|+.||+....+....+. .+++++.+-||
T Consensus 143 G~~~y----------~----------------------------~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG 184 (246)
T COG4221 143 GRYPY----------P----------------------------GGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPG 184 (246)
T ss_pred ccccC----------C----------------------------CCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCc
Confidence 53211 1 116899999988877766655 38999999999
Q ss_pred eeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 284 IIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 284 ~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
.|-.+.-.-++ + .|-..-.... ......+..+|+|+++..++..+..
T Consensus 185 ~v~~~~~s~v~---~--~g~~~~~~~~------------y~~~~~l~p~dIA~~V~~~~~~P~~ 231 (246)
T COG4221 185 LVETTEFSTVR---F--EGDDERADKV------------YKGGTALTPEDIAEAVLFAATQPQH 231 (246)
T ss_pred eecceeccccc---C--CchhhhHHHH------------hccCCCCCHHHHHHHHHHHHhCCCc
Confidence 88554221110 0 1100011111 1224578899999999999998865
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.7e-12 Score=130.22 Aligned_cols=200 Identities=15% Similarity=0.156 Sum_probs=133.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++|+||||+|+||++++++|++. +.+|+++.|... +++++ .+.++. .....+..+.+|+
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~--g~~V~~~~r~~~------~~~~~-----~~~l~~-----~~~~~~~~~~~D~ 65 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAA--GATVILVARHQK------KLEKV-----YDAIVE-----AGHPEPFAIRFDL 65 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHc--CCEEEEEeCChH------HHHHH-----HHHHHH-----cCCCCcceEEeee
Confidence 47899999999999999999999998 678899998752 22221 111111 1123567788999
Q ss_pred CCCCCCCCHHHHHh-------hc-CCccEEEEcccccC----cc----ccHHHHHHHhHHHHHHHHHHHHHc---CCccE
Q psy7542 139 AVPDLGISAEDRQM-------LS-ETIHIVYHIAATVR----FD----DYMQTYVFLNTRGTRDMLNLSKQM---IHLQL 199 (762)
Q Consensus 139 ~~~~LGLs~~~l~~-------l~-~~vDiViH~AA~v~----f~----~~l~~~~~~NV~GT~~LLelA~~~---~~lk~ 199 (762)
++.+ .+++.. .. ..+|+|||+||... +. +.+...+++|+.|+..+++.+... .+..+
T Consensus 66 ~~~~----~~~~~~~~~~i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~ 141 (239)
T PRK08703 66 MSAE----EKEFEQFAATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDAS 141 (239)
T ss_pred cccc----hHHHHHHHHHHHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCE
Confidence 7632 112222 22 46899999999642 11 345567899999999988887542 13468
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-----C
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-----G 274 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-----g 274 (762)
+|++||..+.... +. -..|+.||+..|.+++..+.. +
T Consensus 142 iv~~ss~~~~~~~----------~~----------------------------~~~Y~~sKaa~~~~~~~la~e~~~~~~ 183 (239)
T PRK08703 142 VIFVGESHGETPK----------AY----------------------------WGGFGASKAALNYLCKVAADEWERFGN 183 (239)
T ss_pred EEEEeccccccCC----------CC----------------------------ccchHHhHHHHHHHHHHHHHHhccCCC
Confidence 9999986543211 00 147999999999998877662 5
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhc
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWN 344 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~ 344 (762)
+++++++||.|.++..... . .+ .....+...+|++.++...+..
T Consensus 184 i~v~~v~pG~v~t~~~~~~---~--------------~~---------~~~~~~~~~~~~~~~~~~~~~~ 227 (239)
T PRK08703 184 LRANVLVPGPINSPQRIKS---H--------------PG---------EAKSERKSYGDVLPAFVWWASA 227 (239)
T ss_pred eEEEEEecCcccCcccccc---C--------------CC---------CCccccCCHHHHHHHHHHHhCc
Confidence 8999999999877642210 0 00 1112356888999998888764
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.9e-12 Score=136.34 Aligned_cols=179 Identities=15% Similarity=0.082 Sum_probs=122.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+++||||||+||.+++++|++. +.+|++..|.... .++.++++ .... ...++.++.+|+
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~--G~~Vil~~R~~~~--~~~~~~~l---------~~~~----~~~~v~~~~~Dl 74 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAA--GAEVILPVRNRAK--GEAAVAAI---------RTAV----PDAKLSLRALDL 74 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCHHH--HHHHHHHH---------HHhC----CCCceEEEEecC
Confidence 57899999999999999999999998 6788999886421 12222222 1111 124688999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVYV 203 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~v 203 (762)
++.+ ++++++ ..+|++||+||.... .+.++..+.+|+.|...+.+.+... .+-.++|++
T Consensus 75 ~d~~------sv~~~~~~~~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~v 148 (313)
T PRK05854 75 SSLA------SVAALGEQLRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQ 148 (313)
T ss_pred CCHH------HHHHHHHHHHHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 9865 444333 358999999997532 1456778999999988877776531 123589999
Q ss_pred eCCcccCCCc---ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH------cC
Q psy7542 204 STAYCHPKEK---VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME------AG 274 (762)
Q Consensus 204 SSay~~~~~~---~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~------~g 274 (762)
||........ .+.+. .+. ..-..|+.||+..+.+..+.+. .|
T Consensus 149 sS~~~~~~~~~~~~~~~~---~~~--------------------------~~~~~Y~~SK~a~~~~~~~la~~~~~~~~g 199 (313)
T PRK05854 149 SSIAARRGAINWDDLNWE---RSY--------------------------AGMRAYSQSKIAVGLFALELDRRSRAAGWG 199 (313)
T ss_pred echhhcCCCcCccccccc---ccC--------------------------cchhhhHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 9975432111 11110 000 0115799999999999988764 16
Q ss_pred CCEEEEeeeeeccCC
Q psy7542 275 MPCMILRPSIIIPIW 289 (762)
Q Consensus 275 lpv~IvRPs~V~G~~ 289 (762)
+.+..+.||.|-...
T Consensus 200 I~v~~v~PG~v~T~~ 214 (313)
T PRK05854 200 ITSNLAHPGVAPTNL 214 (313)
T ss_pred eEEEEEecceeccCc
Confidence 999999999886543
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.4e-12 Score=131.92 Aligned_cols=224 Identities=12% Similarity=0.026 Sum_probs=139.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|++..|+.. ++++++.+ .+. .....++.++.+|+
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~--G~~v~~~~~~~~-----~~~~~~~~-----~~~-----~~~~~~~~~~~~D~ 68 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQS--GVNIAFTYNSNV-----EEANKIAE-----DLE-----QKYGIKAKAYPLNI 68 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEcCCCH-----HHHHHHHH-----HHH-----HhcCCceEEEEcCC
Confidence 58899999999999999999999998 667777766432 22222111 011 11134788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccC---------c----cccHHHHHHHhHHHHHHHHHHHHH-c--C
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVR---------F----DDYMQTYVFLNTRGTRDMLNLSKQ-M--I 195 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~---------f----~~~l~~~~~~NV~GT~~LLelA~~-~--~ 195 (762)
++++ ++++++ ..+|++||+|+... + .+.+...+++|+.+...+.+.+.. + .
T Consensus 69 ~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~ 142 (260)
T PRK08416 69 LEPE------TYKELFKKIDEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKV 142 (260)
T ss_pred CCHH------HHHHHHHHHHHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhcc
Confidence 9875 444333 35899999997531 1 133456788898887776655543 1 1
Q ss_pred CccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--
Q psy7542 196 HLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-- 273 (762)
Q Consensus 196 ~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-- 273 (762)
+-.++|++||..+.... | ....|+.||+..+.+++..+..
T Consensus 143 ~~g~iv~isS~~~~~~~----------~----------------------------~~~~Y~asK~a~~~~~~~la~el~ 184 (260)
T PRK08416 143 GGGSIISLSSTGNLVYI----------E----------------------------NYAGHGTSKAAVETMVKYAATELG 184 (260)
T ss_pred CCEEEEEEeccccccCC----------C----------------------------CcccchhhHHHHHHHHHHHHHHhh
Confidence 33689999997543211 0 0147999999999999887663
Q ss_pred --CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCC
Q psy7542 274 --GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGN 351 (762)
Q Consensus 274 --glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~ 351 (762)
|+.+..+.||.|-.+.....+ ............. ....+...+|+|++++.++...... .
T Consensus 185 ~~gi~v~~v~PG~i~T~~~~~~~-------~~~~~~~~~~~~~---------~~~r~~~p~~va~~~~~l~~~~~~~--~ 246 (260)
T PRK08416 185 EKNIRVNAVSGGPIDTDALKAFT-------NYEEVKAKTEELS---------PLNRMGQPEDLAGACLFLCSEKASW--L 246 (260)
T ss_pred hhCeEEEEEeeCcccChhhhhcc-------CCHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHcChhhhc--c
Confidence 899999999877443211111 1111111111111 0123567899999999987643221 1
Q ss_pred CceEEEecCC
Q psy7542 352 TMRVINLTAN 361 (762)
Q Consensus 352 ~~~iyNi~s~ 361 (762)
.++.+.+.++
T Consensus 247 ~G~~i~vdgg 256 (260)
T PRK08416 247 TGQTIVVDGG 256 (260)
T ss_pred cCcEEEEcCC
Confidence 3567776554
|
|
| >cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.1e-13 Score=124.93 Aligned_cols=110 Identities=21% Similarity=0.365 Sum_probs=80.9
Q ss_pred cccccceeeecCCCCeEEEEEEEEEcC-eEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhc
Q psy7542 521 CISVSGYRLIECEKPYYVYVIHVRMFQ-QHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNC 599 (762)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (762)
++.|+..+.....+.||||+|+|.... ..|.|.||||||..||+ ++++.+
T Consensus 5 ~~~I~~~~~~~~~~~y~vY~I~v~~~~~~~~~V~RRYseF~~L~~-----------------------------~L~~~f 55 (123)
T cd06882 5 SATIADIEEKRGFTNYYVFVIEVKTKGGSKYLIYRRYRQFFALQS-----------------------------KLEERF 55 (123)
T ss_pred EEEEeeeeEEeCCCCEEEEEEEEEEcCCCEEEEEEEHHHHHHHHH-----------------------------HHHHhC
Confidence 334444444445688999999998754 58999999999999999 555554
Q ss_pred hhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHHhcCC-
Q psy7542 600 KYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGP- 678 (762)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 678 (762)
+. .| |. ....-..|.+|+|+..++..+++++||.+||.||+.+++..+
T Consensus 56 p~----------------~~-------------~~--~~~~~~lP~lP~k~~~~~~~~~~e~Rr~~Le~yl~~Ll~~p~~ 104 (123)
T cd06882 56 GP----------------EA-------------GS--SAYDCTLPTLPGKIYVGRKAEIAERRIPLLNRYMKELLSLPVW 104 (123)
T ss_pred Cc----------------cc-------------cc--CCCCCccCCCCCCeecCccHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 21 00 00 001124788999998665569999999999999999999876
Q ss_pred --ChHHHHhhhCCC
Q psy7542 679 --SRNQVLAFLGVN 690 (762)
Q Consensus 679 --~~~~~~~~~~~~ 690 (762)
....|.+||..+
T Consensus 105 i~~~~~v~~Fl~~~ 118 (123)
T cd06882 105 VLMDEDVRLFFYQT 118 (123)
T ss_pred hcCCHHHHHHhCCC
Confidence 228899999866
|
The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox |
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-12 Score=132.96 Aligned_cols=216 Identities=14% Similarity=0.126 Sum_probs=139.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|... ++++++.. + .++.++.+|+
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~--G~~v~~~~~~~~-----~~~~~l~~---------~-------~~~~~~~~D~ 60 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTD--GANVRFTYAGSK-----DAAERLAQ---------E-------TGATAVQTDS 60 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEecCCCH-----HHHHHHHH---------H-------hCCeEEecCC
Confidence 46899999999999999999999998 667777766432 22222211 0 1356778999
Q ss_pred CCCCCCCCHHHHHhhc---CCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHH-cCCccEEEEEeCCc
Q psy7542 139 AVPDLGISAEDRQMLS---ETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQ-MIHLQLFVYVSTAY 207 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~---~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~-~~~lk~fV~vSSay 207 (762)
++++ .+.+++ ..+|+|||+|+..... +.++..+++|+.|+..++..+.. +..-.++|++||..
T Consensus 61 ~~~~------~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~ 134 (237)
T PRK12742 61 ADRD------AVIDVVRKSGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVN 134 (237)
T ss_pred CCHH------HHHHHHHHhCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 8754 343333 3589999999875321 34567899999999998755544 33346899999976
Q ss_pred ccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEEEeee
Q psy7542 208 CHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMILRPS 283 (762)
Q Consensus 208 ~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~IvRPs 283 (762)
+... +.+. ...|+.+|+..|.+++..+.. |+.+++++||
T Consensus 135 ~~~~---------~~~~----------------------------~~~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg 177 (237)
T PRK12742 135 GDRM---------PVAG----------------------------MAAYAASKSALQGMARGLARDFGPRGITINVVQPG 177 (237)
T ss_pred cccC---------CCCC----------------------------CcchHHhHHHHHHHHHHHHHHHhhhCeEEEEEecC
Confidence 4210 0000 157999999999999876552 7999999999
Q ss_pred eeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 284 IIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 284 ~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
.|..+... . ..+ .... ..... ....+...+|+++++..++..... ...+.++.+.++
T Consensus 178 ~~~t~~~~-------~-~~~--~~~~-~~~~~--------~~~~~~~p~~~a~~~~~l~s~~~~--~~~G~~~~~dgg 234 (237)
T PRK12742 178 PIDTDANP-------A-NGP--MKDM-MHSFM--------AIKRHGRPEEVAGMVAWLAGPEAS--FVTGAMHTIDGA 234 (237)
T ss_pred cccCCccc-------c-ccH--HHHH-HHhcC--------CCCCCCCHHHHHHHHHHHcCcccC--cccCCEEEeCCC
Confidence 88654321 0 111 1111 11110 011346789999999888764432 113566666544
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.4e-12 Score=139.06 Aligned_cols=204 Identities=15% Similarity=0.150 Sum_probs=136.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++|+||||||+||++++++|++. +.+|+++.|.. ++++++.+ .+ .....++.++.+|+
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~--G~~Vvl~~R~~------~~l~~~~~-----~~------~~~g~~~~~~~~Dv 65 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARR--GARLVLAARDE------EALQAVAE-----EC------RALGAEVLVVPTDV 65 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HH------HhcCCcEEEEEeeC
Confidence 46899999999999999999999998 67889998853 23333211 11 11235678899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc---c----ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF---D----DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f---~----~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ ++++++ ..+|++||+|+...+ . +.++..+++|+.|+.++.+++... .+..++|
T Consensus 66 ~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV 139 (330)
T PRK06139 66 TDAD------QVKALATQAASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFI 139 (330)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEE
Confidence 9876 455544 468999999996432 1 345668999999999988776431 1346899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHH----HHHHHc-CCC
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVV----TEYMEA-GMP 276 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv----~~~~~~-glp 276 (762)
++||..+.... | ....|+.||+..+.+. .+.... ++.
T Consensus 140 ~isS~~~~~~~----------p----------------------------~~~~Y~asKaal~~~~~sL~~El~~~~gI~ 181 (330)
T PRK06139 140 NMISLGGFAAQ----------P----------------------------YAAAYSASKFGLRGFSEALRGELADHPDIH 181 (330)
T ss_pred EEcChhhcCCC----------C----------------------------CchhHHHHHHHHHHHHHHHHHHhCCCCCeE
Confidence 99997543211 1 1157999999655444 444333 799
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
++.+.||.|.++..+ +..+. .+. .......++..+++|++++.++.++.
T Consensus 182 V~~v~Pg~v~T~~~~----~~~~~-----------~~~------~~~~~~~~~~pe~vA~~il~~~~~~~ 230 (330)
T PRK06139 182 VCDVYPAFMDTPGFR----HGANY-----------TGR------RLTPPPPVYDPRRVAKAVVRLADRPR 230 (330)
T ss_pred EEEEecCCccCcccc----ccccc-----------ccc------cccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 999999988665321 10000 000 00112236789999999999987654
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=137.09 Aligned_cols=156 Identities=16% Similarity=0.143 Sum_probs=117.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|+||||+|+||+++++.|++. +.+|.++.|..... ...++..+.+|+
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~--G~~v~~~~~~~~~~--------------------------~~~~~~~~~~D~ 58 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLAN--GANVVNADIHGGDG--------------------------QHENYQFVPTDV 58 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCcccc--------------------------ccCceEEEEccC
Confidence 47899999999999999999999998 67888888764321 113677899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc----------------cccHHHHHHHhHHHHHHHHHHHHHc-
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF----------------DDYMQTYVFLNTRGTRDMLNLSKQM- 194 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f----------------~~~l~~~~~~NV~GT~~LLelA~~~- 194 (762)
+++. +++.++ ..+|+|||+|+.... .+.++..+++|+.|+..+++++...
T Consensus 59 ~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~ 132 (266)
T PRK06171 59 SSAE------EVNHTVAEIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQM 132 (266)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence 9875 444433 358999999996421 1345668999999999999988753
Q ss_pred --CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH
Q psy7542 195 --IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME 272 (762)
Q Consensus 195 --~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~ 272 (762)
.+-.++|++||..+..... . ...|+.||+..+.+++..+.
T Consensus 133 ~~~~~g~iv~isS~~~~~~~~----------~----------------------------~~~Y~~sK~a~~~l~~~la~ 174 (266)
T PRK06171 133 VKQHDGVIVNMSSEAGLEGSE----------G----------------------------QSCYAATKAALNSFTRSWAK 174 (266)
T ss_pred HhcCCcEEEEEccccccCCCC----------C----------------------------CchhHHHHHHHHHHHHHHHH
Confidence 1235799999986532210 0 15799999999999888765
Q ss_pred ----cCCCEEEEeeeeec
Q psy7542 273 ----AGMPCMILRPSIII 286 (762)
Q Consensus 273 ----~glpv~IvRPs~V~ 286 (762)
.|+++.+++||.+-
T Consensus 175 e~~~~gi~v~~v~pG~~~ 192 (266)
T PRK06171 175 ELGKHNIRVVGVAPGILE 192 (266)
T ss_pred HhhhcCeEEEEEeccccc
Confidence 28999999999874
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-12 Score=134.19 Aligned_cols=221 Identities=17% Similarity=0.084 Sum_probs=136.6
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
.|+||||||||+||+.+++.|++. +.+|+++.+... ++++++. +.+ .....++..+.+|+++
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~--g~~v~~~~~~~~-----~~~~~~~-----~~~------~~~~~~~~~~~~Dl~~ 63 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAAR--GWSVGINYARDA-----AAAEETA-----DAV------RAAGGRACVVAGDVAN 63 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHC--CCEEEEEeCCCH-----HHHHHHH-----HHH------HhcCCcEEEEEeccCC
Confidence 368999999999999999999998 666666554321 1121111 111 1112478899999998
Q ss_pred CCCCCCHHHHHhhc-------CCccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHH-HcCC-----ccE
Q psy7542 141 PDLGISAEDRQMLS-------ETIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSK-QMIH-----LQL 199 (762)
Q Consensus 141 ~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~-~~~~-----lk~ 199 (762)
++ ++..++ ..+|+|||+|+.... .+.+...+++|+.|+..+++.+. .+.. -.+
T Consensus 64 ~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ 137 (248)
T PRK06947 64 EA------DVIAMFDAVQSAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGA 137 (248)
T ss_pred HH------HHHHHHHHHHHhcCCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcE
Confidence 75 343332 468999999996432 12345678999999988875443 3311 236
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----gl 275 (762)
||++||..+.... +. ....|+.||+..+.+++..+.. ++
T Consensus 138 ii~~sS~~~~~~~----------~~---------------------------~~~~Y~~sK~~~~~~~~~la~~~~~~~i 180 (248)
T PRK06947 138 IVNVSSIASRLGS----------PN---------------------------EYVDYAGSKGAVDTLTLGLAKELGPHGV 180 (248)
T ss_pred EEEECchhhcCCC----------CC---------------------------CCcccHhhHHHHHHHHHHHHHHhhhhCc
Confidence 9999997543211 00 0136999999999888776653 79
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
+++++|||.|..+... + + ..+. ...... ... + ..-...++|++++++.++.+... ...+.+
T Consensus 181 ~v~~i~Pg~v~t~~~~----~--~-~~~~-~~~~~~-~~~------~--~~~~~~~e~va~~~~~l~~~~~~--~~~G~~ 241 (248)
T PRK06947 181 RVNAVRPGLIETEIHA----S--G-GQPG-RAARLG-AQT------P--LGRAGEADEVAETIVWLLSDAAS--YVTGAL 241 (248)
T ss_pred EEEEEeccCccccccc----c--c-CCHH-HHHHHh-hcC------C--CCCCcCHHHHHHHHHHHcCcccc--CcCCce
Confidence 9999999988665321 0 0 0111 111110 010 0 11246789999999988776532 124566
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+.+.++
T Consensus 242 ~~~~gg 247 (248)
T PRK06947 242 LDVGGG 247 (248)
T ss_pred EeeCCC
Confidence 666543
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-11 Score=127.76 Aligned_cols=196 Identities=14% Similarity=0.097 Sum_probs=132.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|+||||||+||++++++|+++++++.|....|..... ....++.++.+|++++
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~-------------------------~~~~~~~~~~~Dls~~ 55 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD-------------------------FQHDNVQWHALDVTDE 55 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc-------------------------cccCceEEEEecCCCH
Confidence 589999999999999999999997677777666643211 0124788899999987
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCcc-------------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEEeC
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFD-------------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVST 205 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~-------------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vSS 205 (762)
+ +.+.+.+.+.++|+|||+||..... +.+...+.+|+.|+..+.+.+... .+..+++++||
T Consensus 56 ~---~~~~~~~~~~~id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss 132 (235)
T PRK09009 56 A---EIKQLSEQFTQLDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISA 132 (235)
T ss_pred H---HHHHHHHhcCCCCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEee
Confidence 6 1222334456799999999976321 224567899999998888877652 12357899987
Q ss_pred CcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc------CCCEEE
Q psy7542 206 AYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA------GMPCMI 279 (762)
Q Consensus 206 ay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~------glpv~I 279 (762)
..+.....+ . + + ...|+.+|+..+.+++..+.. ++.+..
T Consensus 133 ~~~~~~~~~-----~--~---------------------------~-~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~ 177 (235)
T PRK09009 133 KVGSISDNR-----L--G---------------------------G-WYSYRASKAALNMFLKTLSIEWQRSLKHGVVLA 177 (235)
T ss_pred cccccccCC-----C--C---------------------------C-cchhhhhHHHHHHHHHHHHHHhhcccCCeEEEE
Confidence 543211000 0 0 0 047999999999988877642 677888
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
+.||.|-.+...+ ... ......++..+++|++++.++....
T Consensus 178 v~PG~v~t~~~~~-----------------~~~---------~~~~~~~~~~~~~a~~~~~l~~~~~ 218 (235)
T PRK09009 178 LHPGTTDTALSKP-----------------FQQ---------NVPKGKLFTPEYVAQCLLGIIANAT 218 (235)
T ss_pred EcccceecCCCcc-----------------hhh---------ccccCCCCCHHHHHHHHHHHHHcCC
Confidence 8888765442110 000 0112336788999999999988764
|
|
| >cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.2e-13 Score=123.99 Aligned_cols=101 Identities=26% Similarity=0.313 Sum_probs=77.4
Q ss_pred ccccceeeecCCCCeEEEEEEEEEcC-------eEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHH
Q psy7542 522 ISVSGYRLIECEKPYYVYVIHVRMFQ-------QHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQ 594 (762)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (762)
+.|+..+.. +++|++|.|.+..+. ..|.|.+|||||..||+ +
T Consensus 5 ~~V~d~~~~--~~~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~-----------------------------~ 53 (117)
T cd06881 5 FTVTDTRRH--KKGYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHR-----------------------------E 53 (117)
T ss_pred EEecCccee--cCceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHH-----------------------------H
Confidence 455665554 368999999998532 48999999999999998 4
Q ss_pred HhhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-CCCChhHHHHHHHHHHHHHHHH
Q psy7542 595 KKRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-RSNQPKVLDERRHLLEIYLKEM 673 (762)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 673 (762)
+++.++.. +.....|.||+|++ .+.++++++|||++||.||+.+
T Consensus 54 L~~~~~~~-----------------------------------~~~~~~P~lP~K~~~g~~~~~~IeeRr~~Le~fL~~i 98 (117)
T cd06881 54 LSRLHKQL-----------------------------------YLSGSFPPFPKGKYFGRFDAAVIEERRQAILELLDFV 98 (117)
T ss_pred HHHHhhhc-----------------------------------cccCcCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHH
Confidence 44443210 00114688999986 5579999999999999999999
Q ss_pred HhcCCCh--HHHHhhhC
Q psy7542 674 FKFGPSR--NQVLAFLG 688 (762)
Q Consensus 674 ~~~~~~~--~~~~~~~~ 688 (762)
+.....+ ..+.+||.
T Consensus 99 ~~~p~l~~s~~~~~Fl~ 115 (117)
T cd06881 99 GNHPALYQSSAFQQFFE 115 (117)
T ss_pred hCCHhhhcChHHHHHhc
Confidence 8877666 88999985
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont |
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-11 Score=128.38 Aligned_cols=223 Identities=16% Similarity=0.083 Sum_probs=137.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|+||||+|+||.+++++|++. +.+|++..|.... ..+.+.+. ++ ....++..+.+|+
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~--G~~vvi~~~~~~~--~~~~~~~~--------l~------~~~~~~~~~~~Dl 66 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKE--KAKVVINYRSDEE--EANDVAEE--------IK------KAGGEAIAVKGDV 66 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCCHH--HHHHHHHH--------HH------HcCCeEEEEEecC
Confidence 47899999999999999999999998 6777777774321 11111111 11 1124678899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHH----HHcCCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLS----KQMIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA----~~~~~lk~f 200 (762)
+++. ++.+++ ..+|++||+|+.... .+.++..+++|+.|+..+++.+ ++.+.-.++
T Consensus 67 ~~~~------~i~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~i 140 (261)
T PRK08936 67 TVES------DVVNLIQTAVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNI 140 (261)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEE
Confidence 9865 444433 358999999997432 1345567899998887655443 443223689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+.... |. ...|+.+|+..+.+.+..+. .|++
T Consensus 141 v~~sS~~~~~~~----------~~----------------------------~~~Y~~sKaa~~~~~~~la~e~~~~gi~ 182 (261)
T PRK08936 141 INMSSVHEQIPW----------PL----------------------------FVHYAASKGGVKLMTETLAMEYAPKGIR 182 (261)
T ss_pred EEEccccccCCC----------CC----------------------------CcccHHHHHHHHHHHHHHHHHHhhcCeE
Confidence 999997543211 10 15799999776666655543 4899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+++++||.|-.+.... ....+. ....... .. ....+...+|+++++..++...... ..+..+
T Consensus 183 v~~v~pg~v~t~~~~~------~~~~~~-~~~~~~~-~~--------~~~~~~~~~~va~~~~~l~s~~~~~--~~G~~i 244 (261)
T PRK08936 183 VNNIGPGAINTPINAE------KFADPK-QRADVES-MI--------PMGYIGKPEEIAAVAAWLASSEASY--VTGITL 244 (261)
T ss_pred EEEEEECcCCCCcccc------ccCCHH-HHHHHHh-cC--------CCCCCcCHHHHHHHHHHHcCcccCC--ccCcEE
Confidence 9999999886654221 011111 1111111 11 1123666899999999987754331 134555
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+..+
T Consensus 245 ~~d~g 249 (261)
T PRK08936 245 FADGG 249 (261)
T ss_pred EECCC
Confidence 55544
|
|
| >cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23 | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.7e-13 Score=125.05 Aligned_cols=90 Identities=26% Similarity=0.461 Sum_probs=72.8
Q ss_pred cccccceeeec-CCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhc
Q psy7542 521 CISVSGYRLIE-CEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNC 599 (762)
Q Consensus 521 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (762)
.|+|+.+.... ..+.|++|.|.|...+..|.|.+|||||..||+ ++++.+
T Consensus 2 ~i~Ip~~~~~~~~~~~y~vY~I~v~~~~~~w~V~RRYseF~~Lh~-----------------------------~L~~~~ 52 (127)
T cd06874 2 KITIPRYVLRGQGKDEHFEFEVKITVLDETWTVFRRYSRFRELHK-----------------------------TMKLKY 52 (127)
T ss_pred EEEECCeEEecCCCCcEEEEEEEEEECCcEEEEEeeHHHHHHHHH-----------------------------HHHHHc
Confidence 35555565543 457899999999999999999999999999998 666655
Q ss_pred hhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC-CCChhHHHHHHHHHHHHHHHHHhcCC
Q psy7542 600 KYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR-SNQPKVLDERRHLLEIYLKEMFKFGP 678 (762)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (762)
+. ...|.||+|++. +++++++|+||.+||.||+.++..-+
T Consensus 53 p~---------------------------------------~~~~~fP~Kk~~g~~~~~~ie~Rr~~Le~yL~~Ll~~~~ 93 (127)
T cd06874 53 PE---------------------------------------VAALEFPPKKLFGNKSERVAKERRRQLETYLRNFFSVCL 93 (127)
T ss_pred CC---------------------------------------CccCCCCCceecCCCCHHHHHHHHHHHHHHHHHHHHhch
Confidence 22 256779999974 67899999999999999999986544
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso |
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.2e-12 Score=144.70 Aligned_cols=220 Identities=10% Similarity=0.096 Sum_probs=148.5
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
...||++|||||+|.||.+++++|++. +.+|+++.|.. ++++++.+ ....++..+.+|
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~D 323 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAA--GDRLLIIDRDA------EGAKKLAE--------------ALGDEHLSVQAD 323 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH--------------HhCCceeEEEcc
Confidence 458999999999999999999999998 67889998853 23332211 112456778999
Q ss_pred cCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEE
Q psy7542 138 VAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFV 201 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV 201 (762)
+++++ ++..++ ..+|++||+|+.... .+.++..+++|+.|+.++++.+... .+-.++|
T Consensus 324 ~~~~~------~~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv 397 (520)
T PRK06484 324 ITDEA------AVESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIV 397 (520)
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEE
Confidence 99876 444433 358999999997521 1345678999999999999988753 2336899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+..... + ...|+.||+..+.+++..+.. |+++
T Consensus 398 ~isS~~~~~~~~---------~-----------------------------~~~Y~asKaal~~l~~~la~e~~~~gI~v 439 (520)
T PRK06484 398 NLGSIASLLALP---------P-----------------------------RNAYCASKAAVTMLSRSLACEWAPAGIRV 439 (520)
T ss_pred EECchhhcCCCC---------C-----------------------------CchhHHHHHHHHHHHHHHHHHhhhhCeEE
Confidence 999986543211 0 157999999999998887652 7999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchH-HHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTG-LLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~-li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+.+.||.|.++.... ...... ......+.. ....+..++|+|++++.++..... ...++++
T Consensus 440 n~v~PG~v~t~~~~~-------~~~~~~~~~~~~~~~~---------~~~~~~~~~dia~~~~~l~s~~~~--~~~G~~i 501 (520)
T PRK06484 440 NTVAPGYIETPAVLA-------LKASGRADFDSIRRRI---------PLGRLGDPEEVAEAIAFLASPAAS--YVNGATL 501 (520)
T ss_pred EEEEeCCccCchhhh-------hccccHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccc--CccCcEE
Confidence 999999886653211 000000 111111111 012356789999999998864432 1246788
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+.++
T Consensus 502 ~vdgg 506 (520)
T PRK06484 502 TVDGG 506 (520)
T ss_pred EECCC
Confidence 88765
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.1e-12 Score=128.74 Aligned_cols=215 Identities=16% Similarity=0.115 Sum_probs=140.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++||||||+|+||+++++.|++. +.+|+++.|.... .+++.+.. ....++..+.+|+
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~--G~~V~~~~r~~~~---~~~~~~~~---------------~~~~~~~~~~~Dl 62 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKE--GAQVCINSRNENK---LKRMKKTL---------------SKYGNIHYVVGDV 62 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHH---HHHHHHHH---------------HhcCCeEEEECCC
Confidence 36789999999999999999999988 6788999986421 11221110 0113688899999
Q ss_pred CCCCCCCCHHHHHhh-------cCCccEEEEcccccCcc-----ccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEEeC
Q psy7542 139 AVPDLGISAEDRQML-------SETIHIVYHIAATVRFD-----DYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYVST 205 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l-------~~~vDiViH~AA~v~f~-----~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~vSS 205 (762)
++++ ++.++ ...+|.|||+|+..... +.+...+++|+.++..+++.+..+ ..-.+||++||
T Consensus 63 ~~~~------~~~~~~~~~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 63 SSTE------SARNVIEKAAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 9876 34332 34579999999854321 334567899999998888887653 12257999998
Q ss_pred CcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEe
Q psy7542 206 AYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILR 281 (762)
Q Consensus 206 ay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvR 281 (762)
..+.... .+ ....|+.+|+..+.+++..+. .+++++++|
T Consensus 137 ~~~~~~~---------~~----------------------------~~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~ 179 (238)
T PRK05786 137 MSGIYKA---------SP----------------------------DQLSYAVAKAGLAKAVEILASELLGRGIRVNGIA 179 (238)
T ss_pred chhcccC---------CC----------------------------CchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEe
Confidence 7442100 00 014699999999888777655 289999999
Q ss_pred eeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 282 PSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 282 Ps~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
|+.|+++... ..... .. . ......++.+|++++++.++..... ...+..+.+.++
T Consensus 180 pg~v~~~~~~------------~~~~~----~~-~------~~~~~~~~~~~va~~~~~~~~~~~~--~~~g~~~~~~~~ 234 (238)
T PRK05786 180 PTTISGDFEP------------ERNWK----KL-R------KLGDDMAPPEDFAKVIIWLLTDEAD--WVDGVVIPVDGG 234 (238)
T ss_pred cCccCCCCCc------------hhhhh----hh-c------cccCCCCCHHHHHHHHHHHhccccc--CccCCEEEECCc
Confidence 9998876311 00000 00 0 1112367889999999998865332 113566666543
|
|
| >cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.9e-13 Score=125.41 Aligned_cols=98 Identities=31% Similarity=0.473 Sum_probs=78.8
Q ss_pred ccccceeeec--CCCCeEEEEEEEEEcC-----eEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHH
Q psy7542 522 ISVSGYRLIE--CEKPYYVYVIHVRMFQ-----QHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQ 594 (762)
Q Consensus 522 ~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (762)
|.|..+...+ .+|+|++|.|+|.... ..|.|.||||||..||+ +
T Consensus 22 i~I~~~~~~~~~~~k~~~~Y~I~v~~~~~~~~~~~w~V~RRYseF~~Lh~-----------------------------~ 72 (133)
T cd06876 22 VSIQSYISDVEEEGKEFVVYLIEVQRLNNDDQSSGWVVARRYSEFLELHK-----------------------------Y 72 (133)
T ss_pred EEEeeEEeeecCCCceEEEEEEEEEEcCCCCCcccEEEEeEhHHHHHHHH-----------------------------H
Confidence 4555555444 4789999999998744 58999999999999998 6
Q ss_pred HhhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCC---ChhHHHHHHHHHHHHHH
Q psy7542 595 KKRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSN---QPKVLDERRHLLEIYLK 671 (762)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 671 (762)
+++.++. ...|.||+|++..+ +++++++||.+||.||+
T Consensus 73 L~~~~~~---------------------------------------~~~p~~P~K~~~~~~~~~~~~ie~Rr~~Le~yL~ 113 (133)
T cd06876 73 LKKRYPG---------------------------------------VLKLDFPQKRKISLKYSKTLLVEERRKALEKYLQ 113 (133)
T ss_pred HHHHCcC---------------------------------------CCCCCCCccccccCccCCHHHHHHHHHHHHHHHH
Confidence 6665522 26788999997443 69999999999999999
Q ss_pred HHHhcCCCh--HHHHhhh
Q psy7542 672 EMFKFGPSR--NQVLAFL 687 (762)
Q Consensus 672 ~~~~~~~~~--~~~~~~~ 687 (762)
.+++....+ ..+..||
T Consensus 114 ~Ll~~~~l~~s~~l~~FL 131 (133)
T cd06876 114 ELLKIPEVCEDEEFRKFL 131 (133)
T ss_pred HHHcCccccCChHHHHhh
Confidence 999887666 8888998
|
The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul |
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.41 E-value=4e-12 Score=123.57 Aligned_cols=162 Identities=18% Similarity=0.218 Sum_probs=116.5
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHH-HHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRER-LEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eR-l~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++++||||||++|.+++++|++. +. .|+++.|+......... +++ ++ ....++.++.+|++
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~--g~~~v~~~~r~~~~~~~~~~~~~~---------~~------~~~~~~~~~~~D~~ 63 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAER--GARHLVLLSRSGPDAPGAAELLAE---------LE------ALGAEVTVVACDVA 63 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHh--hCCeEEEEeCCCCCCccHHHHHHH---------HH------hcCCeEEEEECCCC
Confidence 47999999999999999999987 54 68888886543221111 111 11 11356788999998
Q ss_pred CCCCCCCHHHHHhhc-------CCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 140 VPDLGISAEDRQMLS-------ETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
+++ ++..++ ..+|+|||+|+..... +.++..+++|+.|+.++++++++. +.++++++||
T Consensus 64 ~~~------~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~ii~~ss 136 (180)
T smart00822 64 DRA------ALAAALAAIPARLGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDL-PLDFFVLFSS 136 (180)
T ss_pred CHH------HHHHHHHHHHHHcCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccC-CcceEEEEcc
Confidence 765 444433 3479999999965321 345678999999999999999775 6789999999
Q ss_pred CcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeee
Q psy7542 206 AYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSII 285 (762)
Q Consensus 206 ay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V 285 (762)
..+..... . ...|+.+|...+.++......+++++.+.||.+
T Consensus 137 ~~~~~~~~----------~----------------------------~~~y~~sk~~~~~~~~~~~~~~~~~~~~~~g~~ 178 (180)
T smart00822 137 VAGVLGNP----------G----------------------------QANYAAANAFLDALAAHRRARGLPATSINWGAW 178 (180)
T ss_pred HHHhcCCC----------C----------------------------chhhHHHHHHHHHHHHHHHhcCCceEEEeeccc
Confidence 75432110 0 147999999999999766555999999998854
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.6e-12 Score=149.93 Aligned_cols=230 Identities=11% Similarity=0.076 Sum_probs=145.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|... +++++. +.+... ....++..+.+|+
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~--Ga~Vvi~~r~~~------~~~~~~-----~~l~~~----~~~~~~~~v~~Dv 474 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAE--GAHVVLADLNLE------AAEAVA-----AEINGQ----FGAGRAVALKMDV 474 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEeCCHH------HHHHHH-----HHHHhh----cCCCcEEEEECCC
Confidence 57899999999999999999999998 678899988642 121111 111100 1123577899999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHH----HcCCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSK----QMIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~----~~~~lk~f 200 (762)
++++ ++.++++ ++|+|||+||.... .+.+...+++|+.|...+.+.+. +.+.-.++
T Consensus 475 td~~------~v~~a~~~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~I 548 (676)
T TIGR02632 475 TDEQ------AVKAAFADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNI 548 (676)
T ss_pred CCHH------HHHHHHHHHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 9865 5555443 68999999996532 13356678899999877765443 22112579
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+.... +. ...|+.||+..|.+++.++.. |++
T Consensus 549 V~iSS~~a~~~~----------~~----------------------------~~aY~aSKaA~~~l~r~lA~el~~~gIr 590 (676)
T TIGR02632 549 VFIASKNAVYAG----------KN----------------------------ASAYSAAKAAEAHLARCLAAEGGTYGIR 590 (676)
T ss_pred EEEeChhhcCCC----------CC----------------------------CHHHHHHHHHHHHHHHHHHHHhcccCeE
Confidence 999997442211 00 157999999999999887663 799
Q ss_pred EEEEeeeeec-cCCCCCCCCCCCCCC---C--chHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCC
Q psy7542 277 CMILRPSIII-PIWKDPLPGWTDNIN---G--PTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPG 350 (762)
Q Consensus 277 v~IvRPs~V~-G~~~eP~pGWidn~~---g--p~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~ 350 (762)
++.++|+.|. |+.-- ..+|..... + ...+... .........++..+|+|+++..++..... .
T Consensus 591 Vn~V~Pg~V~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~r~~l~r~v~peDVA~av~~L~s~~~~--~ 658 (676)
T TIGR02632 591 VNTVNPDAVLQGSGIW-DGEWREERAAAYGIPADELEEH---------YAKRTLLKRHIFPADIAEAVFFLASSKSE--K 658 (676)
T ss_pred EEEEECCceecCcccc-cccchhhhhhcccCChHHHHHH---------HHhcCCcCCCcCHHHHHHHHHHHhCCccc--C
Confidence 9999999886 32110 011211100 0 0000000 01112223568889999999988754322 1
Q ss_pred CCceEEEecCC
Q psy7542 351 NTMRVINLTAN 361 (762)
Q Consensus 351 ~~~~iyNi~s~ 361 (762)
..+.++++.++
T Consensus 659 ~TG~~i~vDGG 669 (676)
T TIGR02632 659 TTGCIITVDGG 669 (676)
T ss_pred CcCcEEEECCC
Confidence 24788888876
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.3e-12 Score=148.68 Aligned_cols=197 Identities=13% Similarity=0.101 Sum_probs=138.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+|+||||||+||++++++|++. +.+|+++.|... +++++.+ .+ .....++.++.+|+
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~--G~~V~~~~r~~~------~~~~~~~-----~~------~~~~~~~~~~~~Dv 429 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEA--GATVFLVARNGE------ALDELVA-----EI------RAKGGTAHAYTCDL 429 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHH------HHHHHHH-----HH------HhcCCcEEEEEecC
Confidence 56899999999999999999999998 678999998642 2222111 01 11135788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc---------cccHHHHHHHhHHHHHHHHHHHHHc---CCccE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF---------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQL 199 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f---------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~ 199 (762)
++++ +++++++ .+|+|||+||.... .+.+...+++|+.|+.++++.+... .+..+
T Consensus 430 ~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~ 503 (657)
T PRK07201 430 TDSA------AVDHTVKDILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGH 503 (657)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCE
Confidence 9876 4554443 68999999996421 1345678999999998887776431 24578
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 275 (762)
||++||..+..... . ...|+.||+..+.+++..+. .|+
T Consensus 504 iv~isS~~~~~~~~----------~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~~i 545 (657)
T PRK07201 504 VVNVSSIGVQTNAP----------R----------------------------FSAYVASKAALDAFSDVAASETLSDGI 545 (657)
T ss_pred EEEECChhhcCCCC----------C----------------------------cchHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999986543211 0 15799999999999887654 289
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF 345 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~ 345 (762)
.+++++||.|..+...+.. . . .....++.+++|+.++.++...
T Consensus 546 ~v~~v~pg~v~T~~~~~~~-------------------~----~----~~~~~~~~~~~a~~i~~~~~~~ 588 (657)
T PRK07201 546 TFTTIHMPLVRTPMIAPTK-------------------R----Y----NNVPTISPEEAADMVVRAIVEK 588 (657)
T ss_pred cEEEEECCcCcccccCccc-------------------c----c----cCCCCCCHHHHHHHHHHHHHhC
Confidence 9999999988654322100 0 0 0123578999999999987653
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-12 Score=134.52 Aligned_cols=165 Identities=15% Similarity=0.171 Sum_probs=119.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++++||||||+||++++++|++. +.+|+++.|.. ++++++.. ....++..+.+|+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~~~~l~~--------------~~~~~~~~~~~D~ 60 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAE--GARVAVLDKSA------AGLQELEA--------------AHGDAVVGVEGDV 60 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHh--------------hcCCceEEEEecc
Confidence 46899999999999999999999998 67888888853 22332211 1124688899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------c-----ccHHHHHHHhHHHHHHHHHHHHHc--CCc
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------D-----DYMQTYVFLNTRGTRDMLNLSKQM--IHL 197 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~-----~~l~~~~~~NV~GT~~LLelA~~~--~~l 197 (762)
++++ ++..++ ..+|++||+||.... . +.++..+++|+.|+..+++++... +.-
T Consensus 61 ~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~ 134 (262)
T TIGR03325 61 RSLD------DHKEAVARCVAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASR 134 (262)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcC
Confidence 9865 333322 468999999986321 1 135678999999999999998653 112
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---C
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---G 274 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---g 274 (762)
.++|++||..+.... +. ...|+.||+..+.+++..+.. +
T Consensus 135 g~iv~~sS~~~~~~~----------~~----------------------------~~~Y~~sKaa~~~l~~~la~e~~~~ 176 (262)
T TIGR03325 135 GSVIFTISNAGFYPN----------GG----------------------------GPLYTAAKHAVVGLVKELAFELAPY 176 (262)
T ss_pred CCEEEEeccceecCC----------CC----------------------------CchhHHHHHHHHHHHHHHHHhhccC
Confidence 478899887543211 00 147999999999999888774 4
Q ss_pred CCEEEEeeeeeccCC
Q psy7542 275 MPCMILRPSIIIPIW 289 (762)
Q Consensus 275 lpv~IvRPs~V~G~~ 289 (762)
+.+..+.||.|..+.
T Consensus 177 irvn~i~PG~i~t~~ 191 (262)
T TIGR03325 177 VRVNGVAPGGMSSDL 191 (262)
T ss_pred eEEEEEecCCCcCCC
Confidence 889999999886553
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-12 Score=134.80 Aligned_cols=158 Identities=16% Similarity=0.124 Sum_probs=114.4
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++||||||||+||++++++|++. +.+|+++.|+.... +. .....++..+.+|++++
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~--G~~v~~~~r~~~~~-----~~-----------------~~~~~~~~~~~~D~~~~ 57 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQP--GIAVLGVARSRHPS-----LA-----------------AAAGERLAEVELDLSDA 57 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhC--CCEEEEEecCcchh-----hh-----------------hccCCeEEEEEeccCCH
Confidence 58999999999999999999998 67888898865321 10 11124688999999987
Q ss_pred CCCCCHHHHHhhc-----------CCccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc---CCccE
Q psy7542 142 DLGISAEDRQMLS-----------ETIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQL 199 (762)
Q Consensus 142 ~LGLs~~~l~~l~-----------~~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~ 199 (762)
+ +++.++ ..+|++||+|+.... .+.+...+++|+.|+..+.+.+... .+..+
T Consensus 58 ~------~~~~~~~~~~~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ 131 (243)
T PRK07023 58 A------AAAAWLAGDLLAAFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERR 131 (243)
T ss_pred H------HHHHHHHHHHHHHhccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCE
Confidence 6 343311 257999999997542 1335678899999977776666532 23468
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---CCC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---GMP 276 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---glp 276 (762)
+|++||..+..... + ...|+.+|+..|.+++.++.. +++
T Consensus 132 iv~isS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~~~~~~~~~i~ 173 (243)
T PRK07023 132 ILHISSGAARNAYA---------G-----------------------------WSVYCATKAALDHHARAVALDANRALR 173 (243)
T ss_pred EEEEeChhhcCCCC---------C-----------------------------chHHHHHHHHHHHHHHHHHhcCCCCcE
Confidence 99999975432110 0 157999999999999987753 899
Q ss_pred EEEEeeeeecc
Q psy7542 277 CMILRPSIIIP 287 (762)
Q Consensus 277 v~IvRPs~V~G 287 (762)
+.+++||.+-.
T Consensus 174 v~~v~pg~~~t 184 (243)
T PRK07023 174 IVSLAPGVVDT 184 (243)
T ss_pred EEEecCCcccc
Confidence 99999987644
|
|
| >cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4 | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.4e-13 Score=125.04 Aligned_cols=101 Identities=22% Similarity=0.312 Sum_probs=79.0
Q ss_pred ccccccceeeecC----CCCeEEEEEEEEEcC---------eEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchh
Q psy7542 520 NCISVSGYRLIEC----EKPYYVYVIHVRMFQ---------QHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSR 586 (762)
Q Consensus 520 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (762)
++|+.+.-+.... .++|+||.|++.... +.|.|.||||||..||+
T Consensus 3 i~v~~~e~~~~~~~~~~~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~---------------------- 60 (129)
T cd06864 3 ITVTEAEKRTGGSAMNLKETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRN---------------------- 60 (129)
T ss_pred eEecChhhccCCCCCCCCCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHH----------------------
Confidence 4454444444432 359999999999644 46889999999999998
Q ss_pred hhhhhHHHHhhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC---------CCCChh
Q psy7542 587 TLKQNRRQKKRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI---------RSNQPK 657 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 657 (762)
++++.++. ...|++|+|++ .+.+++
T Consensus 61 -------~L~~~~p~---------------------------------------~~iPplP~K~~~~~~~~~~~~~~~~~ 94 (129)
T cd06864 61 -------YLVVTYPY---------------------------------------VIVPPLPEKRAMFMWQKLSSDTFDPD 94 (129)
T ss_pred -------HHHHHCCC---------------------------------------CCCCCCCCcceecccccccccCCCHH
Confidence 55554422 26799999986 267899
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCh--HHHHhhhC
Q psy7542 658 VLDERRHLLEIYLKEMFKFGPSR--NQVLAFLG 688 (762)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 688 (762)
++|+||++||.||+.+.+...-+ ..+..||.
T Consensus 95 fie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~ 127 (129)
T cd06864 95 FVERRRAGLENFLLRVAGHPELCQDKIFLEFLT 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHcChhhhcCcHHHHhcC
Confidence 99999999999999999887776 88999986
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of |
| >cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=121.22 Aligned_cols=101 Identities=28% Similarity=0.369 Sum_probs=74.8
Q ss_pred cccceeeecCCCCeEEEEEEEEEcC-------eEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHH
Q psy7542 523 SVSGYRLIECEKPYYVYVIHVRMFQ-------QHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQK 595 (762)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (762)
+|+..+.. +++|++|.|++++.. ..|.|.||||||..||+ +|++.+..+
T Consensus 6 ~V~dp~~~--~~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~----------------------~L~~~~~~~ 61 (118)
T cd07287 6 TVTDPRRH--PKGYTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHK----------------------DLWQIHKNL 61 (118)
T ss_pred EecCCeEc--CCCeEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHH----------------------HHHHhcccc
Confidence 34444444 567999999998765 57999999999999998 444322210
Q ss_pred hhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-CCCChhHHHHHHHHHHHHHHHHH
Q psy7542 596 KRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-RSNQPKVLDERRHLLEIYLKEMF 674 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 674 (762)
+ +.....|.+|+|++ .+++++++|+||++||.||+.+.
T Consensus 62 ---~--------------------------------------~~~~~~Pp~p~k~~~g~~d~~fIe~RR~~Le~fL~~i~ 100 (118)
T cd07287 62 ---C--------------------------------------RQSELFPPFAKAKVFGRFDESVIEERRQCAEDLLQFSA 100 (118)
T ss_pred ---c--------------------------------------cCCcccCCCCCceeecCCCHHHHHHHHHHHHHHHHHHh
Confidence 0 01114677788775 56799999999999999999997
Q ss_pred hcCCCh--HHHHhhhC
Q psy7542 675 KFGPSR--NQVLAFLG 688 (762)
Q Consensus 675 ~~~~~~--~~~~~~~~ 688 (762)
.....+ .+|.+||.
T Consensus 101 ~~p~l~~s~~~~~Fl~ 116 (118)
T cd07287 101 NIPALYNSSQLEDFFK 116 (118)
T ss_pred cCccccCChHHHHHhc
Confidence 766555 88999985
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma |
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=124.91 Aligned_cols=184 Identities=17% Similarity=0.199 Sum_probs=128.9
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+++||||+|.||++++++|.+. .+|+++.|+.. .+.+|++++
T Consensus 1 ~~vlItGas~giG~~la~~l~~~---~~vi~~~r~~~----------------------------------~~~~D~~~~ 43 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR---HEVITAGRSSG----------------------------------DVQVDITDP 43 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc---CcEEEEecCCC----------------------------------ceEecCCCh
Confidence 47999999999999999999876 56788887531 257899886
Q ss_pred CCCCCHHHHHhhcC---CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEEeCCcccC
Q psy7542 142 DLGISAEDRQMLSE---TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYVSTAYCHP 210 (762)
Q Consensus 142 ~LGLs~~~l~~l~~---~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~vSSay~~~ 210 (762)
+ +++.+++ ++|+|||+||...+ .+.+...+++|+.|+.++++++... .+-.+|+++||..+..
T Consensus 44 ~------~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~ 117 (199)
T PRK07578 44 A------SIRALFEKVGKVDAVVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDE 117 (199)
T ss_pred H------HHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCC
Confidence 6 4544443 68999999996432 1345667899999999999988652 2335799999876532
Q ss_pred CCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---CCCEEEEeeeeecc
Q psy7542 211 KEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---GMPCMILRPSIIIP 287 (762)
Q Consensus 211 ~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---glpv~IvRPs~V~G 287 (762)
.. |. ...|+.||+..+.+++..+.. |+.+..+.||.|-.
T Consensus 118 ~~----------~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t 159 (199)
T PRK07578 118 PI----------PG----------------------------GASAATVNGALEGFVKAAALELPRGIRINVVSPTVLTE 159 (199)
T ss_pred CC----------CC----------------------------chHHHHHHHHHHHHHHHHHHHccCCeEEEEEcCCcccC
Confidence 11 00 157999999998888776552 78888999886632
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 288 IWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 288 ~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
+.. .. + ..+. ....++.+|+|++++.++.... .++++++
T Consensus 160 ~~~------------------~~--~--~~~~-----~~~~~~~~~~a~~~~~~~~~~~-----~g~~~~~ 198 (199)
T PRK07578 160 SLE------------------KY--G--PFFP-----GFEPVPAARVALAYVRSVEGAQ-----TGEVYKV 198 (199)
T ss_pred chh------------------hh--h--hcCC-----CCCCCCHHHHHHHHHHHhccce-----eeEEecc
Confidence 210 00 0 0011 1246899999999998887543 3677765
|
|
| >cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21 | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-12 Score=120.38 Aligned_cols=92 Identities=27% Similarity=0.412 Sum_probs=75.8
Q ss_pred cCCCCeEEEEEEEEEc----CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhh
Q psy7542 531 ECEKPYYVYVIHVRMF----QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQW 606 (762)
Q Consensus 531 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
+.+++|++|.|+|... .+.|.|.||||||..||+ ++++.++.
T Consensus 13 ~~~~~yv~Y~I~v~~~~~~~~~~~~v~RRYsdF~~L~~-----------------------------~L~~~~p~----- 58 (112)
T cd07279 13 EGEKKYVVYQLAVVQTGDPDTQPAFIERRYSDFLKLYK-----------------------------ALRKQHPQ----- 58 (112)
T ss_pred CCCeeEEEEEEEEEECCCCCCceEEEecchHhHHHHHH-----------------------------HHHHHCCC-----
Confidence 4568999999999865 356999999999999998 66665532
Q ss_pred hcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-CCCChhHHHHHHHHHHHHHHHHHhcCCCh--HHH
Q psy7542 607 LGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-RSNQPKVLDERRHLLEIYLKEMFKFGPSR--NQV 683 (762)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 683 (762)
.+..|.||+|++ .+.+++++++||.+||.||+.+++...-+ ..+
T Consensus 59 ---------------------------------~~~~~~lP~K~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~ 105 (112)
T cd07279 59 ---------------------------------LMAKVSFPRKVLMGNFSSELIAERSRAFEQFLGHILSIPNLRDSKAF 105 (112)
T ss_pred ---------------------------------cCCCCCCCCCeecccCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHH
Confidence 124678999987 56799999999999999999999877665 889
Q ss_pred HhhhCC
Q psy7542 684 LAFLGV 689 (762)
Q Consensus 684 ~~~~~~ 689 (762)
.+||..
T Consensus 106 ~~FL~~ 111 (112)
T cd07279 106 LDFLQG 111 (112)
T ss_pred HHHhCC
Confidence 999965
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal |
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.7e-12 Score=132.80 Aligned_cols=226 Identities=16% Similarity=0.128 Sum_probs=143.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|+||||+|+||.+++++|++. +.+|+++.|... +++++.+ ....++.++.+|+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~--G~~V~~~~r~~~------~~~~~~~--------------~~~~~~~~~~~D~ 61 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAE--GARVAVLERSAE------KLASLRQ--------------RFGDHVLVVEGDV 61 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH--------------HhCCcceEEEccC
Confidence 47899999999999999999999998 678888888642 2222211 1124678899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-----c---c----cHHHHHHHhHHHHHHHHHHHHHc--CCc
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-----D---D----YMQTYVFLNTRGTRDMLNLSKQM--IHL 197 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-----~---~----~l~~~~~~NV~GT~~LLelA~~~--~~l 197 (762)
++++ +++.++ ..+|++||+|+.... + + .++..+++|+.|+..+++.+... +.-
T Consensus 62 ~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 135 (263)
T PRK06200 62 TSYA------DNQRAVDQTVDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASG 135 (263)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcC
Confidence 9865 344333 368999999996431 1 1 15567889999999998888642 122
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---C
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---G 274 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---g 274 (762)
.++|++||..+..... . ...|+.||+..+.+++..+.. +
T Consensus 136 g~iv~~sS~~~~~~~~----------~----------------------------~~~Y~~sK~a~~~~~~~la~el~~~ 177 (263)
T PRK06200 136 GSMIFTLSNSSFYPGG----------G----------------------------GPLYTASKHAVVGLVRQLAYELAPK 177 (263)
T ss_pred CEEEEECChhhcCCCC----------C----------------------------CchhHHHHHHHHHHHHHHHHHHhcC
Confidence 5799999975532110 0 147999999999999887763 6
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCC--CCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc-cCCCCC
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDN--INGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF-LSNPGN 351 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn--~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~-~~~~~~ 351 (762)
+.+..+.||.|..+...+...-.+. ........... ... ....-+...+|+|++++.++... .. -.
T Consensus 178 Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~p~~r~~~~~eva~~~~fl~s~~~~~--~i 246 (263)
T PRK06200 178 IRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMI-AAI--------TPLQFAPQPEDHTGPYVLLASRRNSR--AL 246 (263)
T ss_pred cEEEEEeCCccccCCcCccccCCCCcccccccchhHHh-hcC--------CCCCCCCCHHHHhhhhhheecccccC--cc
Confidence 8999999998865532210000000 00000010111 111 11123667899999998887644 22 11
Q ss_pred CceEEEecCC
Q psy7542 352 TMRVINLTAN 361 (762)
Q Consensus 352 ~~~iyNi~s~ 361 (762)
.+.++.+.++
T Consensus 247 tG~~i~vdgG 256 (263)
T PRK06200 247 TGVVINADGG 256 (263)
T ss_pred cceEEEEcCc
Confidence 4667777554
|
|
| >cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-12 Score=119.57 Aligned_cols=110 Identities=24% Similarity=0.365 Sum_probs=86.3
Q ss_pred cccccceeeecCCCCeEEEEEEEEE-cCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhc
Q psy7542 521 CISVSGYRLIECEKPYYVYVIHVRM-FQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNC 599 (762)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (762)
.+.+-|++.....++||+|+|.|++ .+..|+|.||||||..+|. ++++.+
T Consensus 3 ~~~~~~~~kr~~~~~~y~Y~i~v~~s~~~~~~v~RrYsdF~~L~~-----------------------------~L~~~f 53 (118)
T cd06887 3 HIALLGFEKRFVPSQHYVYMFLVKWQDLSEKLVYRRFTEIYEFHK-----------------------------TLKEMF 53 (118)
T ss_pred eEEEEEEEEeecCCCcEEEEEEEEEcCCcEEEEEeeHHHHHHHHH-----------------------------HHHHhC
Confidence 4567788888888999999999998 7889999999999999999 666655
Q ss_pred hhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHHhcCCC
Q psy7542 600 KYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGPS 679 (762)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (762)
..- +|. ..+..-..|.+|+|..-.++ ++.|+||.+||.||++++...+.
T Consensus 54 p~E--------------ag~----------------~~~~~r~lP~lP~k~~~~~~-~v~e~Rr~~L~~Yl~~Ll~lp~~ 102 (118)
T cd06887 54 PIE--------------AGD----------------INKENRIIPHLPAPKWFDGQ-RAAENRQGTLTEYCSTLLSLPPK 102 (118)
T ss_pred Ccc--------------ccc----------------cCCCCCcCCCCCCCcccCcc-hHHHHHHHHHHHHHHHHHhCCch
Confidence 310 010 01112357889999886666 99999999999999999887744
Q ss_pred h---HHHHhhhCCC
Q psy7542 680 R---NQVLAFLGVN 690 (762)
Q Consensus 680 ~---~~~~~~~~~~ 690 (762)
. ..|+.||...
T Consensus 103 i~~s~~v~~Ff~~~ 116 (118)
T cd06887 103 ISRCPHVLDFFKVR 116 (118)
T ss_pred hhCCHHHHHHhCcC
Confidence 3 8999998754
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one |
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-11 Score=124.65 Aligned_cols=209 Identities=11% Similarity=0.066 Sum_probs=137.2
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|+||||||+|+||.+++++|++. +.+|+++.|.... ..+.+++ .++.++.+|+++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~--~~~~~~~--------------------~~~~~~~~D~~~ 57 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQ--GQPVIVSYRTHYP--AIDGLRQ--------------------AGAQCIQADFST 57 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHC--CCeEEEEeCCchh--HHHHHHH--------------------cCCEEEEcCCCC
Confidence 478999999999999999999998 6788899886532 1111110 236788999998
Q ss_pred CCCCCCHHHHHhh-------cCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CC--ccEEE
Q psy7542 141 PDLGISAEDRQML-------SETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IH--LQLFV 201 (762)
Q Consensus 141 ~~LGLs~~~l~~l-------~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~--lk~fV 201 (762)
++ +++.+ ...+|++||+|+.... .+.++..+++|+.++..+.+.+... .+ ..++|
T Consensus 58 ~~------~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv 131 (236)
T PRK06483 58 NA------GIMAFIDELKQHTDGLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDII 131 (236)
T ss_pred HH------HHHHHHHHHHhhCCCccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEE
Confidence 75 33332 2358999999986421 2346678999999998877776542 11 35799
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---CCCEE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---GMPCM 278 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---glpv~ 278 (762)
++||..+.... | ....|+.||+..|.+++.++.. ++.+.
T Consensus 132 ~~ss~~~~~~~----------~----------------------------~~~~Y~asKaal~~l~~~~a~e~~~~irvn 173 (236)
T PRK06483 132 HITDYVVEKGS----------D----------------------------KHIAYAASKAALDNMTLSFAAKLAPEVKVN 173 (236)
T ss_pred EEcchhhccCC----------C----------------------------CCccHHHHHHHHHHHHHHHHHHHCCCcEEE
Confidence 99886432111 0 0157999999999999988774 68999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
.++||.+..... .............. ..-+...+|+|+++..++..... .++++.+
T Consensus 174 ~v~Pg~~~~~~~-----------~~~~~~~~~~~~~~---------~~~~~~~~~va~~~~~l~~~~~~----~G~~i~v 229 (236)
T PRK06483 174 SIAPALILFNEG-----------DDAAYRQKALAKSL---------LKIEPGEEEIIDLVDYLLTSCYV----TGRSLPV 229 (236)
T ss_pred EEccCceecCCC-----------CCHHHHHHHhccCc---------cccCCCHHHHHHHHHHHhcCCCc----CCcEEEe
Confidence 999997732210 01111111111110 01134579999999888853332 4677777
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.++
T Consensus 230 dgg 232 (236)
T PRK06483 230 DGG 232 (236)
T ss_pred Ccc
Confidence 655
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.8e-12 Score=129.45 Aligned_cols=214 Identities=14% Similarity=0.056 Sum_probs=135.8
Q ss_pred EEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCCC
Q psy7542 64 IFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDL 143 (762)
Q Consensus 64 VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~L 143 (762)
|+||||||+||.++++.|++. +.+|+++.|.... +++++. +.+ .....++.++.+|+++++
T Consensus 1 vlItGas~giG~~~a~~l~~~--G~~v~~~~~~~~~-----~~~~~~-----~~l------~~~~~~~~~~~~Dl~~~~- 61 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAAD--GFEICVHYHSGRS-----DAESVV-----SAI------QAQGGNARLLQFDVADRV- 61 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCCHH-----HHHHHH-----HHH------HHcCCeEEEEEccCCCHH-
Confidence 689999999999999999998 6778888875421 122211 111 112357899999999875
Q ss_pred CCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHH-H---cCCccEEEEEeC
Q psy7542 144 GISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSK-Q---MIHLQLFVYVST 205 (762)
Q Consensus 144 GLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~-~---~~~lk~fV~vSS 205 (762)
++..++ ..+|++||+|+.... .+.+...+++|+.|+.++++.+. . ..+..+||++||
T Consensus 62 -----~~~~~~~~~~~~~~~i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS 136 (239)
T TIGR01831 62 -----ACRTLLEADIAEHGAYYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLAS 136 (239)
T ss_pred -----HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence 343332 357999999986431 24466789999999999988763 1 123468999999
Q ss_pred CcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEe
Q psy7542 206 AYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILR 281 (762)
Q Consensus 206 ay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvR 281 (762)
..+.... |. ...|+.+|+..+.+.+..+. .|++++.++
T Consensus 137 ~~~~~~~----------~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~ 178 (239)
T TIGR01831 137 VSGVMGN----------RG----------------------------QVNYSAAKAGLIGATKALAVELAKRKITVNCIA 178 (239)
T ss_pred hhhccCC----------CC----------------------------CcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEE
Confidence 7442211 00 14699999988777766544 389999999
Q ss_pred eeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 282 PSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 282 Ps~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
||.|.++.....+ .......... + ...+...+|++++++.++...... ..+.+..+.+
T Consensus 179 Pg~v~t~~~~~~~----------~~~~~~~~~~-~--------~~~~~~~~~va~~~~~l~~~~~~~--~~g~~~~~~g 236 (239)
T TIGR01831 179 PGLIDTEMLAEVE----------HDLDEALKTV-P--------MNRMGQPAEVASLAGFLMSDGASY--VTRQVISVNG 236 (239)
T ss_pred EccCccccchhhh----------HHHHHHHhcC-C--------CCCCCCHHHHHHHHHHHcCchhcC--ccCCEEEecC
Confidence 9988665322111 0111111100 0 112456799999999988754321 1344555543
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-11 Score=128.33 Aligned_cols=209 Identities=13% Similarity=0.100 Sum_probs=130.6
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+++||||||+||.++++.|++. +.+|+++.|... .+++.. +.++ ......+..+.+|++++
T Consensus 1 k~vlItGas~giG~~la~~la~~--G~~vv~~~r~~~------~~~~~~-----~~~~-----~~~~~~~~~~~~D~~~~ 62 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQ--GAELFLTDRDAD------GLAQTV-----ADAR-----ALGGTVPEHRALDISDY 62 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHH-----HHHH-----hcCCCcceEEEeeCCCH
Confidence 57999999999999999999988 677888888532 111111 0111 01112355678999986
Q ss_pred CCCCCHHHHHhh-------cCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH----cCCccEEEEE
Q psy7542 142 DLGISAEDRQML-------SETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ----MIHLQLFVYV 203 (762)
Q Consensus 142 ~LGLs~~~l~~l-------~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~----~~~lk~fV~v 203 (762)
+ ++..+ ...+|+|||+||.... .+.++..+++|+.|+..+++++.. .+...++|++
T Consensus 63 ~------~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~i 136 (272)
T PRK07832 63 D------AVAAFAADIHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNV 136 (272)
T ss_pred H------HHHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 5 33332 2458999999986432 134567899999999999998753 1123589999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~I 279 (762)
||..+.... | ....|+.||+..+.+.+..+. .++++++
T Consensus 137 sS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~ 178 (272)
T PRK07832 137 SSAAGLVAL----------P----------------------------WHAAYSASKFGLRGLSEVLRFDLARHGIGVSV 178 (272)
T ss_pred ccccccCCC----------C----------------------------CCcchHHHHHHHHHHHHHHHHHhhhcCcEEEE
Confidence 997542111 1 114699999977766655443 3899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhc
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWN 344 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~ 344 (762)
++||.|.++....... .+............. ......+..+++|++++.++..
T Consensus 179 v~Pg~v~t~~~~~~~~--~~~~~~~~~~~~~~~----------~~~~~~~~~~~vA~~~~~~~~~ 231 (272)
T PRK07832 179 VVPGAVKTPLVNTVEI--AGVDREDPRVQKWVD----------RFRGHAVTPEKAAEKILAGVEK 231 (272)
T ss_pred EecCcccCcchhcccc--cccCcchhhHHHHHH----------hcccCCCCHHHHHHHHHHHHhc
Confidence 9999987664321100 000000000000000 0012357899999999999853
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-11 Score=126.42 Aligned_cols=205 Identities=19% Similarity=0.183 Sum_probs=141.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.++++++|||||+.||..++++|.++ +.+|+++.|+. +||.++.+ .+. ....-.+.++..|+
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~--g~~liLvaR~~------~kL~~la~-----~l~-----~~~~v~v~vi~~DL 65 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARR--GYNLILVARRE------DKLEALAK-----ELE-----DKTGVEVEVIPADL 65 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCcH------HHHHHHHH-----HHH-----HhhCceEEEEECcC
Confidence 47899999999999999999999999 77889999974 56655432 121 12245788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHH-c--CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQ-M--IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~-~--~~lk~fV 201 (762)
++++ ++.++.. .+|++|++||...+. +...+.+++|+.++..|-.+... + .+-.++|
T Consensus 66 s~~~------~~~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~Ii 139 (265)
T COG0300 66 SDPE------ALERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHII 139 (265)
T ss_pred CChh------HHHHHHHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 9987 4544432 599999999986542 33456899999998888766643 1 2345899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHH----HHHHHcCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVV----TEYMEAGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv----~~~~~~glpv 277 (762)
.++|..+..+. |. -..|+.||+..-.+- .+....|+.|
T Consensus 140 NI~S~ag~~p~----------p~----------------------------~avY~ATKa~v~~fSeaL~~EL~~~gV~V 181 (265)
T COG0300 140 NIGSAAGLIPT----------PY----------------------------MAVYSATKAFVLSFSEALREELKGTGVKV 181 (265)
T ss_pred EEechhhcCCC----------cc----------------------------hHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 99998765432 11 168999999554443 3443348999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
+.+-||.+....-+ ..+.... ......-++..++||+..+.++.+...
T Consensus 182 ~~v~PG~~~T~f~~-------------------~~~~~~~---~~~~~~~~~~~~~va~~~~~~l~~~k~ 229 (265)
T COG0300 182 TAVCPGPTRTEFFD-------------------AKGSDVY---LLSPGELVLSPEDVAEAALKALEKGKR 229 (265)
T ss_pred EEEecCcccccccc-------------------ccccccc---cccchhhccCHHHHHHHHHHHHhcCCc
Confidence 99999976544211 0000000 001234578899999999999887554
|
|
| >cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10 | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-12 Score=120.01 Aligned_cols=89 Identities=22% Similarity=0.351 Sum_probs=73.5
Q ss_pred CCCCeEEEEEEEEEcC-----eEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhh
Q psy7542 532 CEKPYYVYVIHVRMFQ-----QHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQW 606 (762)
Q Consensus 532 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
..++|++|.|++.... .+|.|.||||||..||+ ++++.++.
T Consensus 14 ~~~~y~~Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~-----------------------------~L~~~~~~----- 59 (113)
T cd06898 14 DWGSYTDYEIFLHTNSMCFTLKTSCVRRRYSEFVWLRN-----------------------------RLQKNALL----- 59 (113)
T ss_pred CCCCeEEEEEEEEeCCCccCcCceEEEcchHHHHHHHH-----------------------------HHHHHCCC-----
Confidence 5689999999997553 56799999999999998 66666532
Q ss_pred hcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-CCCC-hhHHHHHHHHHHHHHHHHHhcCCCh--HH
Q psy7542 607 LGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-RSNQ-PKVLDERRHLLEIYLKEMFKFGPSR--NQ 682 (762)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 682 (762)
...|.+|+|++ .+.+ ++++++||.+||.||+.+++.+.-+ ..
T Consensus 60 ----------------------------------~~~p~lP~K~~~~~~~~~~fie~Rr~~L~~fL~~i~~~p~l~~s~~ 105 (113)
T cd06898 60 ----------------------------------IQLPSLPPKNLFGRFNNEGFIEERQQGLQDFLEKVLQTPLLLSDSR 105 (113)
T ss_pred ----------------------------------CcCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHcChhhccChH
Confidence 25889999996 4445 9999999999999999999877666 78
Q ss_pred HHhhhC
Q psy7542 683 VLAFLG 688 (762)
Q Consensus 683 ~~~~~~ 688 (762)
+.+||.
T Consensus 106 l~~FL~ 111 (113)
T cd06898 106 LHLFLQ 111 (113)
T ss_pred HHHhcc
Confidence 899985
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells. |
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-12 Score=130.30 Aligned_cols=162 Identities=12% Similarity=0.137 Sum_probs=114.5
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++|+||||||++|++++++|++. +.+|+++.|..... +.+++ ..++.++.+|++++
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~--G~~V~~~~r~~~~~---~~~~~-------------------~~~~~~~~~D~~d~ 57 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLER--GWQVTATVRGPQQD---TALQA-------------------LPGVHIEKLDMNDP 57 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhC--CCEEEEEeCCCcch---HHHHh-------------------ccccceEEcCCCCH
Confidence 68999999999999999999998 67899999975432 11111 13567788999886
Q ss_pred CCCCCHHHHHhhcC-----CccEEEEcccccCc---------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEEEeC
Q psy7542 142 DLGISAEDRQMLSE-----TIHIVYHIAATVRF---------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVYVST 205 (762)
Q Consensus 142 ~LGLs~~~l~~l~~-----~vDiViH~AA~v~f---------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~vSS 205 (762)
+ +++.+.+ ++|+|||+|+.... .+.+...+.+|+.++..+++.+... .+...++++||
T Consensus 58 ~------~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss 131 (225)
T PRK08177 58 A------SLDQLLQRLQGQRFDLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSS 131 (225)
T ss_pred H------HHHHHHHHhhcCCCCEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEcc
Confidence 5 3433333 58999999987532 1335567888999999998888643 12257888888
Q ss_pred CcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEEEe
Q psy7542 206 AYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMILR 281 (762)
Q Consensus 206 ay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~IvR 281 (762)
.++.....+ .. .+ ..|+.+|+..|.+++.++.. ++.+..++
T Consensus 132 ~~g~~~~~~-------~~---------------------------~~-~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~ 176 (225)
T PRK08177 132 QLGSVELPD-------GG---------------------------EM-PLYKASKAALNSMTRSFVAELGEPTLTVLSMH 176 (225)
T ss_pred CccccccCC-------CC---------------------------Cc-cchHHHHHHHHHHHHHHHHHhhcCCeEEEEEc
Confidence 754322110 00 01 36999999999999887653 68899999
Q ss_pred eeeeccC
Q psy7542 282 PSIIIPI 288 (762)
Q Consensus 282 Ps~V~G~ 288 (762)
||.|-.+
T Consensus 177 PG~i~t~ 183 (225)
T PRK08177 177 PGWVKTD 183 (225)
T ss_pred CCceecC
Confidence 9977443
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2e-11 Score=125.41 Aligned_cols=198 Identities=14% Similarity=0.104 Sum_probs=134.2
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++++||||||+||++++++|++. +.+|+++.|.... .+++.. .+++.+.+|+++.
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~--G~~v~~~~r~~~~---~~~~~~--------------------~~~~~~~~D~~~~ 56 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRAD--GWRVIATARDAAA---LAALQA--------------------LGAEALALDVADP 56 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhC--CCEEEEEECCHHH---HHHHHh--------------------ccceEEEecCCCH
Confidence 58999999999999999999987 6788888886421 111111 2356789999997
Q ss_pred CCCCCHHHHHhh---cC--CccEEEEcccccCc---------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEEEeC
Q psy7542 142 DLGISAEDRQML---SE--TIHIVYHIAATVRF---------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVYVST 205 (762)
Q Consensus 142 ~LGLs~~~l~~l---~~--~vDiViH~AA~v~f---------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~vSS 205 (762)
+ +++.+ +. .+|+|||+|+.... .+.++..+++|+.|+.++++.+... ..-.+++++||
T Consensus 57 ~------~v~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS 130 (222)
T PRK06953 57 A------SVAGLAWKLDGEALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSS 130 (222)
T ss_pred H------HHHHHHHHhcCCCCCEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcC
Confidence 6 44443 22 48999999997521 2345678999999999999988752 12247899988
Q ss_pred CcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--CCCEEEEeee
Q psy7542 206 AYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--GMPCMILRPS 283 (762)
Q Consensus 206 ay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--glpv~IvRPs 283 (762)
..+.....+ .. ....|+.+|+..+.+++..+.. +++++.++||
T Consensus 131 ~~~~~~~~~---------~~--------------------------~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg 175 (222)
T PRK06953 131 RMGSIGDAT---------GT--------------------------TGWLYRASKAALNDALRAASLQARHATCIALHPG 175 (222)
T ss_pred ccccccccc---------CC--------------------------CccccHHhHHHHHHHHHHHhhhccCcEEEEECCC
Confidence 743221100 00 0035999999999999987764 7889999998
Q ss_pred eeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 284 IIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 284 ~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
.|..+... + ...+..++.+..++.++..... ...+..|...+
T Consensus 176 ~i~t~~~~-----------------------------~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 217 (222)
T PRK06953 176 WVRTDMGG-----------------------------A----QAALDPAQSVAGMRRVIAQATR--RDNGRFFQYDG 217 (222)
T ss_pred eeecCCCC-----------------------------C----CCCCCHHHHHHHHHHHHHhcCc--ccCceEEeeCC
Confidence 76443210 0 1135678888888887665433 22456666654
|
|
| >cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42 | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=120.06 Aligned_cols=86 Identities=28% Similarity=0.419 Sum_probs=71.4
Q ss_pred CCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhhhccccc
Q psy7542 533 EKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQWLGLNNV 612 (762)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (762)
.++|++|.|+|.- |.|.||||||..||+ ++++.++.
T Consensus 15 ~~~y~~Y~I~~~~----~~V~RRYsdF~~L~~-----------------------------~L~~~~p~----------- 50 (112)
T cd06867 15 SGSYIVYVIRLGG----SEVKRRYSEFESLRK-----------------------------NLTRLYPT----------- 50 (112)
T ss_pred ccCEEEEEEEeee----EEEEeccHHHHHHHH-----------------------------HHHHHCcC-----------
Confidence 5799999999854 999999999999998 66665522
Q ss_pred ccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC----------CCChhHHHHHHHHHHHHHHHHHhcCCCh--
Q psy7542 613 LWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR----------SNQPKVLDERRHLLEIYLKEMFKFGPSR-- 680 (762)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 680 (762)
...|++|+|+.. +++++++|+||.+||.||+.+.+...-+
T Consensus 51 ----------------------------~~iPplP~K~~~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s 102 (112)
T cd06867 51 ----------------------------LIIPPIPEKHSLKDYAKKPSKAKNDAKIIERRKRMLQRFLNRCLQHPILRND 102 (112)
T ss_pred ----------------------------CCcCCCCCcchhhhhccccccccCcHHHHHHHHHHHHHHHHHHhcChhhccC
Confidence 257899999852 4789999999999999999998876655
Q ss_pred HHHHhhhCCC
Q psy7542 681 NQVLAFLGVN 690 (762)
Q Consensus 681 ~~~~~~~~~~ 690 (762)
..+.+||.-|
T Consensus 103 ~~~~~FL~~~ 112 (112)
T cd06867 103 IVFQKFLDPN 112 (112)
T ss_pred cHHHHhcCCC
Confidence 8899999754
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back |
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-11 Score=126.05 Aligned_cols=224 Identities=16% Similarity=0.111 Sum_probs=144.8
Q ss_pred hccCCCEEEEECCCC-hhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 57 ATLEHKNIFITGASG-FVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 57 ~~~~gk~VLVTGATG-FLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
..+++++++||||+| .||..+++.|++. +.+|++..|... ++++.. +.++... ...++..+.
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~--G~~V~~~~~~~~------~~~~~~-----~~~~~~~----~~~~~~~~~ 75 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEE--GARVVISDIHER------RLGETA-----DELAAEL----GLGRVEAVV 75 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHc--CCEEEEEeCCHH------HHHHHH-----HHHHHhc----CCceEEEEE
Confidence 345789999999998 5999999999998 667888877532 222211 1111100 114688899
Q ss_pred eecCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CC-c
Q psy7542 136 GDVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IH-L 197 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~-l 197 (762)
+|+++++ +++.++ ..+|+|||+|+.... .+.+...+++|+.|+..+++.+... .+ -
T Consensus 76 ~Dl~~~~------~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ 149 (262)
T PRK07831 76 CDVTSEA------QVDALIDAAVERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHG 149 (262)
T ss_pred ccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC
Confidence 9999865 444433 358999999996431 1346678899999999988887542 11 3
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---- 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---- 273 (762)
.++|++||..+..... ....|+.||+..|.+++.++..
T Consensus 150 g~iv~~ss~~~~~~~~--------------------------------------~~~~Y~~sKaal~~~~~~la~e~~~~ 191 (262)
T PRK07831 150 GVIVNNASVLGWRAQH--------------------------------------GQAHYAAAKAGVMALTRCSALEAAEY 191 (262)
T ss_pred cEEEEeCchhhcCCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHhCcc
Confidence 5788888875432110 0157999999999999887752
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+++++++||.+..+... ... +........... ...-+...+|+|++++.++..... -..+
T Consensus 192 gI~v~~i~Pg~~~t~~~~-------~~~-~~~~~~~~~~~~---------~~~r~~~p~~va~~~~~l~s~~~~--~itG 252 (262)
T PRK07831 192 GVRINAVAPSIAMHPFLA-------KVT-SAELLDELAARE---------AFGRAAEPWEVANVIAFLASDYSS--YLTG 252 (262)
T ss_pred CeEEEEEeeCCccCcccc-------ccc-CHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCchhc--CcCC
Confidence 899999999988765321 111 112222221111 112366779999999998765432 1135
Q ss_pred eEEEecC
Q psy7542 354 RVINLTA 360 (762)
Q Consensus 354 ~iyNi~s 360 (762)
+++.+.+
T Consensus 253 ~~i~v~~ 259 (262)
T PRK07831 253 EVVSVSS 259 (262)
T ss_pred ceEEeCC
Confidence 6666654
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=143.67 Aligned_cols=168 Identities=17% Similarity=0.103 Sum_probs=120.4
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
-+.++++|||||||+||++++++|++. +.+|+++.|+... .+.+.+. ++ ....++.++.+|
T Consensus 312 ~~~~~~~lv~G~s~giG~~~a~~l~~~--G~~v~~~~r~~~~---~~~~~~~--------~~------~~~~~~~~~~~D 372 (582)
T PRK05855 312 PFSGKLVVVTGAGSGIGRETALAFARE--GAEVVASDIDEAA---AERTAEL--------IR------AAGAVAHAYRVD 372 (582)
T ss_pred cCCCCEEEEECCcCHHHHHHHHHHHHC--CCEEEEEeCCHHH---HHHHHHH--------HH------hcCCeEEEEEcC
Confidence 356789999999999999999999998 6788999886421 1112111 11 112468899999
Q ss_pred cCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc----CCccE
Q psy7542 138 VAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM----IHLQL 199 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~----~~lk~ 199 (762)
+++++ +++++++ .+|+|||+||.... .+.+...+++|+.|+.++++++... +.-.+
T Consensus 373 v~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~ 446 (582)
T PRK05855 373 VSDAD------AMEAFAEWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGH 446 (582)
T ss_pred CCCHH------HHHHHHHHHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcE
Confidence 99876 4444433 48999999997542 2356678899999999988876432 11258
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 275 (762)
+|++||..+..... + -..|+.||+..+.+++..+. .|+
T Consensus 447 iv~~sS~~~~~~~~---------~-----------------------------~~~Y~~sKaa~~~~~~~l~~e~~~~gi 488 (582)
T PRK05855 447 IVNVASAAAYAPSR---------S-----------------------------LPAYATSKAAVLMLSECLRAELAAAGI 488 (582)
T ss_pred EEEECChhhccCCC---------C-----------------------------CcHHHHHHHHHHHHHHHHHHHhcccCc
Confidence 99999986643211 0 15799999988888776654 389
Q ss_pred CEEEEeeeeeccC
Q psy7542 276 PCMILRPSIIIPI 288 (762)
Q Consensus 276 pv~IvRPs~V~G~ 288 (762)
+++++.||.|-.+
T Consensus 489 ~v~~v~Pg~v~t~ 501 (582)
T PRK05855 489 GVTAICPGFVDTN 501 (582)
T ss_pred EEEEEEeCCCccc
Confidence 9999999988554
|
|
| >cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1 | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-12 Score=121.38 Aligned_cols=103 Identities=22% Similarity=0.347 Sum_probs=78.5
Q ss_pred ccccccceeeecCCCCeEEEEEEEEEc-----CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHH
Q psy7542 520 NCISVSGYRLIECEKPYYVYVIHVRMF-----QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQ 594 (762)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (762)
++|.-+..+- +..++|++|.|++... +..|.|.||||||..||+ +
T Consensus 3 i~V~~p~~~~-~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~-----------------------------~ 52 (124)
T cd07281 3 VSITDPEKIG-DGMNAYVVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYE-----------------------------K 52 (124)
T ss_pred EEEcCCeEee-CCcCCeEEEEEEEecCCCccCCCceEEEeehHHHHHHHH-----------------------------H
Confidence 3343333332 3458999999999865 478999999999999998 6
Q ss_pred HhhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCC-----------CChhHHHHHH
Q psy7542 595 KKRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRS-----------NQPKVLDERR 663 (762)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 663 (762)
+++.+.+ .....|.+|+|++.. ++++++|+||
T Consensus 53 L~~~~~~-------------------------------------~~~~iPp~P~K~~~~~~~~~~~~~~~~~~~fie~Rr 95 (124)
T cd07281 53 LSEKHSQ-------------------------------------NGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLERRR 95 (124)
T ss_pred HHHhCCC-------------------------------------CCcEeCCCCCccccccchhhccccccccHHHHHHHH
Confidence 6665522 011467788887643 4789999999
Q ss_pred HHHHHHHHHHHhcCCCh--HHHHhhhCC
Q psy7542 664 HLLEIYLKEMFKFGPSR--NQVLAFLGV 689 (762)
Q Consensus 664 ~~~~~~~~~~~~~~~~~--~~~~~~~~~ 689 (762)
.+||.||+.++..+.-+ ..|.+||..
T Consensus 96 ~~Le~FL~~l~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07281 96 AALERYLQRIVSHPSLLQDPDVREFLEK 123 (124)
T ss_pred HHHHHHHHHHhcCcccccChHHHHHhCC
Confidence 99999999999888766 899999974
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-11 Score=130.23 Aligned_cols=230 Identities=14% Similarity=0.046 Sum_probs=143.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||++|||||+|.||++++++|++. |.+|+++.|... +++++.+ .++. ....++.++.+|+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~--G~~V~~~~r~~~------~~~~~~~-----~~~~-----~~~~~~~~~~~Dv 67 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARA--GADVILLSRNEE------NLKKARE-----KIKS-----ESNVDVSYIVADL 67 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH-----HHHh-----hcCCceEEEEecC
Confidence 47899999999999999999999998 678888888632 2222111 1110 1124688999999
Q ss_pred CCCCCCCCHHHHHhhcC------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLSE------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~ 202 (762)
++++ +++.+++ .+|++||+|+.... .+.++..+++|+.|...+.+.+... .+..++|+
T Consensus 68 ~~~~------~i~~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~ 141 (263)
T PRK08339 68 TKRE------DLERTVKELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIY 141 (263)
T ss_pred CCHH------HHHHHHHHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 9875 4444443 58999999986432 2456778999999877776655421 23468999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~ 278 (762)
+||..+.... |. ...|+.+|+..+.+.+..+. .|+.+.
T Consensus 142 isS~~~~~~~----------~~----------------------------~~~y~asKaal~~l~~~la~el~~~gIrVn 183 (263)
T PRK08339 142 STSVAIKEPI----------PN----------------------------IALSNVVRISMAGLVRTLAKELGPKGITVN 183 (263)
T ss_pred EcCccccCCC----------Cc----------------------------chhhHHHHHHHHHHHHHHHHHhcccCeEEE
Confidence 9998653211 00 14699999998888877766 289999
Q ss_pred EEeeeeeccCCCCCC-CCCCCCC-CCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 279 ILRPSIIIPIWKDPL-PGWTDNI-NGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 279 IvRPs~V~G~~~eP~-pGWidn~-~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
.+.||.|-.+..... ....... ..+......... . .....+...+|+|++++.++...... ..+.++
T Consensus 184 ~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~p~~r~~~p~dva~~v~fL~s~~~~~--itG~~~ 252 (263)
T PRK08339 184 GIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAK-P--------IPLGRLGEPEEIGYLVAFLASDLGSY--INGAMI 252 (263)
T ss_pred EEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhc-c--------CCcccCcCHHHHHHHHHHHhcchhcC--ccCceE
Confidence 999998754421000 0000000 000011111111 0 01123567899999998887653321 146677
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+.++
T Consensus 253 ~vdgG 257 (263)
T PRK08339 253 PVDGG 257 (263)
T ss_pred EECCC
Confidence 77665
|
|
| >cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-12 Score=122.85 Aligned_cols=115 Identities=24% Similarity=0.288 Sum_probs=78.8
Q ss_pred CCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhh--chhhhHhhhccc
Q psy7542 533 EKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRN--CKYFIYQWLGLN 610 (762)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 610 (762)
..-|++|+|+|...+..|.|+||||+|..||. .|++.+.-++-. -+.+.-+|+-
T Consensus 20 ~~~~~~Y~Iev~~g~~~W~V~RRy~~F~~Lh~----------------------~L~~~~~~l~~p~p~k~~~~~~~~-- 75 (140)
T cd06895 20 LLNPNLYTIELQHGQFTWTIKRRYKHFQELHQ----------------------ALKLYRALLRIPLPTRRHKEERLS-- 75 (140)
T ss_pred CCceEEEEEEEEECCEEEEEEeeHHHHHHHHH----------------------HHHHhcccccccCchHHhhhhhhc--
Confidence 46789999999999999999999999999998 344321100000 0111111211
Q ss_pred ccccCCCCcccccchhhhhcccccccc--ccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHHhcCCCh--HHHHhh
Q psy7542 611 NVLWYPGGAMTNTVNLYLYLDFGFFQN--KTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGPSR--NQVLAF 686 (762)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 686 (762)
..=.--++ ...-..|++|.|.....++.++++||.+||.||+.+++...-+ .++.+|
T Consensus 76 -------------------~~~~~~~~~~~~~~~lP~lP~~~~~~~~~~~ie~Rr~~Le~YL~~LL~~~~~rn~~~~~~F 136 (140)
T cd06895 76 -------------------LKRSRKPEREKKNRRLPSLPALPDILVSEEQLDSRKKQLENYLQNLLKIPDYRNHPETLEF 136 (140)
T ss_pred -------------------cccccccccccccccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHhh
Confidence 00000000 0111589999998655699999999999999999999887666 899999
Q ss_pred hCCC
Q psy7542 687 LGVN 690 (762)
Q Consensus 687 ~~~~ 690 (762)
|+|.
T Consensus 137 LeVS 140 (140)
T cd06895 137 LEVS 140 (140)
T ss_pred hccC
Confidence 9873
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr |
| >cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-12 Score=118.15 Aligned_cols=100 Identities=23% Similarity=0.349 Sum_probs=82.3
Q ss_pred cccccceeeecCCCCeEEEEEEEE--EcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhh
Q psy7542 521 CISVSGYRLIECEKPYYVYVIHVR--MFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRN 598 (762)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (762)
.+.|-|++..-..++||+|+|+|+ -....|.|.|||+||..||+ ++++.
T Consensus 3 ~v~v~~~~kr~~~~~~yvY~I~V~~~~~~~~~~V~RrYseF~~Lh~-----------------------------~L~~~ 53 (111)
T cd06884 3 RVTVVGFQKRYDPEKYYVYVVEVTRENQASPQHVFRTYKEFLELYQ-----------------------------KLCRK 53 (111)
T ss_pred EEEEEEEEEEecCCCeEEEEEEEEEcCCCceEEEEeEHHHHHHHHH-----------------------------HHHHH
Confidence 356777887778899999999997 33368999999999999999 77777
Q ss_pred chhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC--CCCChhHHHHHHHHHHHHHHHHHhc
Q psy7542 599 CKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI--RSNQPKVLDERRHLLEIYLKEMFKF 676 (762)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (762)
+.. ...|+||+|.. +++++++.|+|+..||.||+++++.
T Consensus 54 FP~---------------------------------------~~lp~LP~k~~~~~~~~~~v~e~R~~~L~~Yl~~Ll~~ 94 (111)
T cd06884 54 FPL---------------------------------------AKLHPLSTGSHVGRSNIKSVAEKRKQDIQQFLNSLFKM 94 (111)
T ss_pred CCC---------------------------------------CCCCCCCCceeecCCcchHHHHHHHHHHHHHHHHHHcC
Confidence 632 25688999875 5789999999999999999999998
Q ss_pred CCCh---HHHHhhhC
Q psy7542 677 GPSR---NQVLAFLG 688 (762)
Q Consensus 677 ~~~~---~~~~~~~~ 688 (762)
.+.. ..|..|+.
T Consensus 95 ~~~is~~~~v~~FF~ 109 (111)
T cd06884 95 AEEVSHSDLVYTFFH 109 (111)
T ss_pred CHHHhcChHHHHhcC
Confidence 7655 77888873
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a |
| >cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-12 Score=122.14 Aligned_cols=88 Identities=25% Similarity=0.360 Sum_probs=72.6
Q ss_pred CeEEEEEEEEEcC-----eEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhhhcc
Q psy7542 535 PYYVYVIHVRMFQ-----QHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQWLGL 609 (762)
Q Consensus 535 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (762)
.-++|.|+|.... ..|.|.||||||+.||+ ++++.++.
T Consensus 43 ~~~~y~VqV~v~~~~~~~~~w~V~RRYSDF~~L~~-----------------------------~L~~~~p~-------- 85 (138)
T cd06879 43 VDKFYRVQVGVQSPEGITTMRGVLRRFNDFLKLHT-----------------------------DLKKLFPK-------- 85 (138)
T ss_pred ceEEEEEEEeecCCCCcceeeeeecCchHHHHHHH-----------------------------HHHHHCCC--------
Confidence 3468999998773 48999999999999998 66665532
Q ss_pred cccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-CCCChhHHHHHHHHHHHHHHHHHhcCCCh--HHHHhh
Q psy7542 610 NNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-RSNQPKVLDERRHLLEIYLKEMFKFGPSR--NQVLAF 686 (762)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 686 (762)
...|.+|||++ .+++++++||||++||.||+.++.....+ .+|.+|
T Consensus 86 -------------------------------~~lPplPpK~~l~~~~~~fiEeRR~gLE~fLq~Ll~~p~l~~s~~v~~F 134 (138)
T cd06879 86 -------------------------------KKLPAAPPKGLLRMKNRALLEERRHSLEEWMGKLLSDIDLSRSVPVASF 134 (138)
T ss_pred -------------------------------CcCCCCCCcccccCCCHHHHHHHHHHHHHHHHHHHcCccccCCHHHHHH
Confidence 14778899985 67889999999999999999998877555 899999
Q ss_pred hCCC
Q psy7542 687 LGVN 690 (762)
Q Consensus 687 ~~~~ 690 (762)
|++.
T Consensus 135 Lele 138 (138)
T cd06879 135 LELE 138 (138)
T ss_pred hCCC
Confidence 9863
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. |
| >cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19 | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-12 Score=122.02 Aligned_cols=45 Identities=27% Similarity=0.502 Sum_probs=37.9
Q ss_pred CCCCcC-----CCCChhHHHHHHHHHHHHHHHHHhcCCCh--HHHHhhhCCC
Q psy7542 646 FPPKKI-----RSNQPKVLDERRHLLEIYLKEMFKFGPSR--NQVLAFLGVN 690 (762)
Q Consensus 646 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 690 (762)
+|+|++ .+.+++++|+||.+||.||+.++.....+ ..|.+||.++
T Consensus 81 ~P~k~~p~lp~g~~d~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~ 132 (132)
T cd06893 81 GPPKRLFDLPFGNMDKDKIEARRGLLETFLRQLCSIPEISNSEEVQEFLAYG 132 (132)
T ss_pred CCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCHhhhcCHHHHHHHccC
Confidence 555544 57789999999999999999999877766 8999999874
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found |
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.1e-11 Score=124.95 Aligned_cols=224 Identities=9% Similarity=-0.003 Sum_probs=136.5
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++++||||+|+||++++++|++. +.+|+++.|... ++++++.+ .+.. ....++..+.+|++++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~--G~~V~~~~~~~~-----~~~~~~~~-----~l~~-----~~~~~~~~~~~Dv~d~ 64 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQE--GYRVVLHYHRSA-----AAASTLAA-----ELNA-----RRPNSAVTCQADLSNS 64 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhC--CCeEEEEcCCcH-----HHHHHHHH-----HHHh-----ccCCceEEEEccCCCc
Confidence 47999999999999999999998 677888776532 11211110 1110 1123567789999997
Q ss_pred CCCC-C-HHHHHh---hcCCccEEEEcccccCc------c--c----------cHHHHHHHhHHHHHHHHHHHHHc-C--
Q psy7542 142 DLGI-S-AEDRQM---LSETIHIVYHIAATVRF------D--D----------YMQTYVFLNTRGTRDMLNLSKQM-I-- 195 (762)
Q Consensus 142 ~LGL-s-~~~l~~---l~~~vDiViH~AA~v~f------~--~----------~l~~~~~~NV~GT~~LLelA~~~-~-- 195 (762)
+--- . .+.++. ....+|+|||+||.... + + .+...+++|+.|+..+++.+... .
T Consensus 65 ~~~~~~~~~~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~ 144 (267)
T TIGR02685 65 ATLFSRCEAIIDACFRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGT 144 (267)
T ss_pred hhhHHHHHHHHHHHHHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhc
Confidence 5100 0 011111 22468999999986421 1 1 25678999999999998876432 1
Q ss_pred ------CccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHH
Q psy7542 196 ------HLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTE 269 (762)
Q Consensus 196 ------~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~ 269 (762)
.-..++++||..+.... | ..+.|+.||+..|.+++.
T Consensus 145 ~~~~~~~~~~iv~~~s~~~~~~~----------~----------------------------~~~~Y~asK~a~~~~~~~ 186 (267)
T TIGR02685 145 RAEQRSTNLSIVNLCDAMTDQPL----------L----------------------------GFTMYTMAKHALEGLTRS 186 (267)
T ss_pred ccccCCCCeEEEEehhhhccCCC----------c----------------------------ccchhHHHHHHHHHHHHH
Confidence 11357777776432110 0 015799999999999988
Q ss_pred HHHc----CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc
Q psy7542 270 YMEA----GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF 345 (762)
Q Consensus 270 ~~~~----glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~ 345 (762)
.+.. |+++++++||.+..+... +......... ..+ ....+...++++++++.++...
T Consensus 187 la~e~~~~gi~v~~v~PG~~~~~~~~-----------~~~~~~~~~~-~~~-------~~~~~~~~~~va~~~~~l~~~~ 247 (267)
T TIGR02685 187 AALELAPLQIRVNGVAPGLSLLPDAM-----------PFEVQEDYRR-KVP-------LGQREASAEQIADVVIFLVSPK 247 (267)
T ss_pred HHHHHhhhCeEEEEEecCCccCcccc-----------chhHHHHHHH-hCC-------CCcCCCCHHHHHHHHHHHhCcc
Confidence 7653 899999999987543211 0111111111 100 0012467899999999988654
Q ss_pred cCCCCCCceEEEecCC
Q psy7542 346 LSNPGNTMRVINLTAN 361 (762)
Q Consensus 346 ~~~~~~~~~iyNi~s~ 361 (762)
.. ...+..+.+.++
T Consensus 248 ~~--~~~G~~~~v~gg 261 (267)
T TIGR02685 248 AK--YITGTCIKVDGG 261 (267)
T ss_pred cC--CcccceEEECCc
Confidence 32 124667777655
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-12 Score=119.66 Aligned_cols=88 Identities=23% Similarity=0.286 Sum_probs=71.8
Q ss_pred CCCCeEEEEEEEEEc---CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhhhc
Q psy7542 532 CEKPYYVYVIHVRMF---QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQWLG 608 (762)
Q Consensus 532 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (762)
..+.|++|.|+|... +..|.|.||||||..||+ +++... .
T Consensus 17 ~~~~~t~Y~I~v~~~~~~~~~w~V~RRYsdF~~Lh~-----------------------------~L~~~~-~------- 59 (120)
T cd06871 17 NIQSHTEYIIRVQRGPSPENSWQVIRRYNDFDLLNA-----------------------------SLQISG-I------- 59 (120)
T ss_pred CccCcEEEEEEEEECCcCCceeEEEeeHHHHHHHHH-----------------------------HHHHcC-C-------
Confidence 347799999999853 569999999999999998 444221 1
Q ss_pred ccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-CCCChhHHHHHHHHHHHHHHHHHhcCCCh--HHHHh
Q psy7542 609 LNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-RSNQPKVLDERRHLLEIYLKEMFKFGPSR--NQVLA 685 (762)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 685 (762)
.. .||||++ .+.+++++++||.+||.||+.+++...-+ ..+.+
T Consensus 60 ---------------------------------~~-plP~K~~~g~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~ 105 (120)
T cd06871 60 ---------------------------------SL-PLPPKKLIGNMDREFIAERQQGLQNYLNVILMNPILASCLPVKK 105 (120)
T ss_pred ---------------------------------CC-CCCCccccCCCCHHHHHHHHHHHHHHHHHHHcChhhccCHHHHH
Confidence 22 4888886 67889999999999999999999877666 89999
Q ss_pred hhCCC
Q psy7542 686 FLGVN 690 (762)
Q Consensus 686 ~~~~~ 690 (762)
||..+
T Consensus 106 FL~~~ 110 (120)
T cd06871 106 FLDPN 110 (120)
T ss_pred hcCcc
Confidence 99865
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes. |
| >cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-12 Score=119.57 Aligned_cols=89 Identities=19% Similarity=0.382 Sum_probs=74.5
Q ss_pred CCCeEEEEEEEEEc-----CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhhh
Q psy7542 533 EKPYYVYVIHVRMF-----QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQWL 607 (762)
Q Consensus 533 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
+++|++|.|++... ...|.|.||||||..||. ++++.+..
T Consensus 20 ~~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~-----------------------------~L~~~~p~------ 64 (120)
T cd06865 20 GPPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALAD-----------------------------RLAEAYRG------ 64 (120)
T ss_pred CCCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHH-----------------------------HHHHHCCC------
Confidence 48999999999876 478999999999999998 55555421
Q ss_pred cccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCC----CChhHHHHHHHHHHHHHHHHHhcCCCh--H
Q psy7542 608 GLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRS----NQPKVLDERRHLLEIYLKEMFKFGPSR--N 681 (762)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 681 (762)
...|.+|+|.+.+ .+++++|+||.+||.||+.+.+.+.-+ .
T Consensus 65 ---------------------------------~~iPplP~K~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~ 111 (120)
T cd06865 65 ---------------------------------AFVPPRPDKSVVESQVMQSAEFIEQRRVALEKYLNRLAAHPVIGLSD 111 (120)
T ss_pred ---------------------------------CeeCCCcCCccccccccCCHHHHHHHHHHHHHHHHHHHcCceeecCc
Confidence 2688899998753 489999999999999999999877665 8
Q ss_pred HHHhhhCC
Q psy7542 682 QVLAFLGV 689 (762)
Q Consensus 682 ~~~~~~~~ 689 (762)
.+..||..
T Consensus 112 ~~~~FL~~ 119 (120)
T cd06865 112 ELRVFLTL 119 (120)
T ss_pred HHHHhccC
Confidence 88999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu |
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-11 Score=127.91 Aligned_cols=169 Identities=15% Similarity=0.101 Sum_probs=116.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+++||||+|+||++++++|++. +.+|+++.|... ++++.. +.+... ....++..+.+|+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~--G~~V~~~~r~~~------~~~~~~-----~~~~~~----~~~~~~~~~~~D~ 68 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEA--GASVAICGRDEE------RLASAE-----ARLREK----FPGARLLAARCDV 68 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHC--CCeEEEEeCCHH------HHHHHH-----HHHHhh----CCCceEEEEEecC
Confidence 47899999999999999999999998 678899999642 222211 011111 1124688899999
Q ss_pred CCCCCCCCHHHHHhh-------cCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQML-------SETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l-------~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++++ ...+|++||+|+.... .+.+...+++|+.|...+++.+... .+..++|
T Consensus 69 ~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv 142 (265)
T PRK07062 69 LDEA------DVAAFAAAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIV 142 (265)
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEE
Confidence 9875 44333 2458999999996432 1346678899998877777665431 1346899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... . ...|+.+|+..+.+++..+. .|+++
T Consensus 143 ~isS~~~~~~~~----------~----------------------------~~~y~asKaal~~~~~~la~e~~~~gi~v 184 (265)
T PRK07062 143 CVNSLLALQPEP----------H----------------------------MVATSAARAGLLNLVKSLATELAPKGVRV 184 (265)
T ss_pred EeccccccCCCC----------C----------------------------chHhHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 999986532110 0 14689999987777765544 38999
Q ss_pred EEEeeeeeccC
Q psy7542 278 MILRPSIIIPI 288 (762)
Q Consensus 278 ~IvRPs~V~G~ 288 (762)
+.++||.|-.+
T Consensus 185 ~~i~PG~v~t~ 195 (265)
T PRK07062 185 NSILLGLVESG 195 (265)
T ss_pred EEEecCccccc
Confidence 99999987544
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.2e-11 Score=135.75 Aligned_cols=163 Identities=20% Similarity=0.195 Sum_probs=117.1
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.+++++++||||+|+||..+++.|.+. +.+|+++.|+... +.++++.+ + -+...+.+|
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~--Ga~vi~~~~~~~~----~~l~~~~~---------~-------~~~~~~~~D 264 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARD--GAHVVCLDVPAAG----EALAAVAN---------R-------VGGTALALD 264 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEEeCCccH----HHHHHHHH---------H-------cCCeEEEEe
Confidence 457899999999999999999999988 7788888885332 22322211 0 134578899
Q ss_pred cCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 138 VAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
+++++ +++.++ ..+|+|||+|+.... .+.++..+++|+.|+.++++++... ..-.+|
T Consensus 265 v~~~~------~~~~~~~~~~~~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~i 338 (450)
T PRK08261 265 ITAPD------APARIAEHLAERHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRI 338 (450)
T ss_pred CCCHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEE
Confidence 99865 344333 258999999997642 2456678999999999999998763 122689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... . ...|+.+|+..+.+++..+. .|++
T Consensus 339 v~~SS~~~~~g~~----------~----------------------------~~~Y~asKaal~~~~~~la~el~~~gi~ 380 (450)
T PRK08261 339 VGVSSISGIAGNR----------G----------------------------QTNYAASKAGVIGLVQALAPLLAERGIT 380 (450)
T ss_pred EEECChhhcCCCC----------C----------------------------ChHHHHHHHHHHHHHHHHHHHHhhhCcE
Confidence 9999975432110 0 15799999977777666544 3899
Q ss_pred EEEEeeeeec
Q psy7542 277 CMILRPSIII 286 (762)
Q Consensus 277 v~IvRPs~V~ 286 (762)
+..+.||.|-
T Consensus 381 v~~v~PG~i~ 390 (450)
T PRK08261 381 INAVAPGFIE 390 (450)
T ss_pred EEEEEeCcCc
Confidence 9999999764
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-11 Score=125.09 Aligned_cols=224 Identities=13% Similarity=0.078 Sum_probs=142.7
Q ss_pred cCCCEEEEECCC--ChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGAS--GFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGAT--GFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
++||+++||||+ +-||+.++++|++. +.+|++..|+......++.++++.+ ...++.++.+
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~--G~~v~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 66 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAA--GAELGITYLPDEKGRFEKKVRELTE---------------PLNPSLFLPC 66 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHC--CCEEEEEecCcccchHHHHHHHHHh---------------ccCcceEeec
Confidence 378999999986 79999999999998 6677777665432122333333211 1134678899
Q ss_pred ecCCCCCCCCHHHHHhhc-------CCccEEEEcccccC-------c----cccHHHHHHHhHHHHHHHHHHHHH-cCCc
Q psy7542 137 DVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVR-------F----DDYMQTYVFLNTRGTRDMLNLSKQ-MIHL 197 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~-------f----~~~l~~~~~~NV~GT~~LLelA~~-~~~l 197 (762)
|+++++ +++.++ ..+|++||+|+... + .+.++..+++|+.|+..+.+.+.. +..-
T Consensus 67 Dl~d~~------~v~~~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~ 140 (258)
T PRK07370 67 DVQDDA------QIEETFETIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEG 140 (258)
T ss_pred CcCCHH------HHHHHHHHHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhC
Confidence 999876 444333 36899999999642 1 134567899999999998887754 2222
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---- 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---- 273 (762)
.++|++||..+.... |. ...|+.||+..+.+.+..+..
T Consensus 141 g~Iv~isS~~~~~~~----------~~----------------------------~~~Y~asKaal~~l~~~la~el~~~ 182 (258)
T PRK07370 141 GSIVTLTYLGGVRAI----------PN----------------------------YNVMGVAKAALEASVRYLAAELGPK 182 (258)
T ss_pred CeEEEEeccccccCC----------cc----------------------------cchhhHHHHHHHHHHHHHHHHhCcC
Confidence 589999997543211 10 157999999999998887652
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+.++.+.||.|-.+...... +.......... . .....+...+|+++++..++...... -.+
T Consensus 183 gI~Vn~i~PG~v~T~~~~~~~-------~~~~~~~~~~~-~--------~p~~r~~~~~dva~~~~fl~s~~~~~--~tG 244 (258)
T PRK07370 183 NIRVNAISAGPIRTLASSAVG-------GILDMIHHVEE-K--------APLRRTVTQTEVGNTAAFLLSDLASG--ITG 244 (258)
T ss_pred CeEEEEEecCcccCchhhccc-------cchhhhhhhhh-c--------CCcCcCCCHHHHHHHHHHHhChhhcc--ccC
Confidence 799999999988554221110 00011111110 0 01123566799999999987644321 135
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++.+.++
T Consensus 245 ~~i~vdgg 252 (258)
T PRK07370 245 QTIYVDAG 252 (258)
T ss_pred cEEEECCc
Confidence 66666544
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-10 Score=123.03 Aligned_cols=223 Identities=14% Similarity=0.099 Sum_probs=138.2
Q ss_pred cCCCEEEEECCCC--hhHHHHHHHHHHcCCCcEEEEEeCCCCCcc-----hHHHHHHHhcChhHHHHHhhhhcccccCCe
Q psy7542 59 LEHKNIFITGASG--FVGKVLLEKILRTCENVKIYILLRPKKNKN-----SRERLEEIFQSPLYEALKKEQSESAIFEKV 131 (762)
Q Consensus 59 ~~gk~VLVTGATG--FLG~~LvekLL~~gp~v~V~~LvR~~~~~~-----~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV 131 (762)
++||+|+|||||| .||.+++++|++. +.+|++..|...... ..+.+.++. +.+ .....++
T Consensus 4 l~~k~vlVtGas~~~giG~~~a~~l~~~--G~~vi~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------~~~g~~~ 70 (256)
T PRK12859 4 LKNKVAVVTGVSRLDGIGAAICKELAEA--GADIFFTYWTAYDKEMPWGVDQDEQIQLQ-----EEL------LKNGVKV 70 (256)
T ss_pred cCCcEEEEECCCCCCChHHHHHHHHHHC--CCeEEEEecccccccccccccHHHHHHHH-----HHH------HhcCCeE
Confidence 5789999999995 7999999999998 667777654321100 011111110 111 1123578
Q ss_pred EEEEeecCCCCCCCCHHHHHhhc-------CCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHH-c--
Q psy7542 132 IPINGDVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQ-M-- 194 (762)
Q Consensus 132 ~~V~GDl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~-~-- 194 (762)
..+.+|+++++ ++..++ ..+|+|||+|+..... +.++..+++|+.|...+...+.. +
T Consensus 71 ~~~~~D~~~~~------~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ 144 (256)
T PRK12859 71 SSMELDLTQND------APKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDK 144 (256)
T ss_pred EEEEcCCCCHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 89999999876 444333 3479999999975421 24566799999998888654432 2
Q ss_pred CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH--
Q psy7542 195 IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME-- 272 (762)
Q Consensus 195 ~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~-- 272 (762)
.+-.+||++||..+.... | ....|+.+|+..+.+++..+.
T Consensus 145 ~~~g~iv~isS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~l~~~la~~~ 186 (256)
T PRK12859 145 KSGGRIINMTSGQFQGPM----------V----------------------------GELAYAATKGAIDALTSSLAAEV 186 (256)
T ss_pred cCCeEEEEEcccccCCCC----------C----------------------------CchHHHHHHHHHHHHHHHHHHHh
Confidence 123589999998643211 0 115799999999999887765
Q ss_pred --cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCC
Q psy7542 273 --AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPG 350 (762)
Q Consensus 273 --~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~ 350 (762)
.|++++.++||.|-.+.. ...+...... . .....+...+|+|++++.++..... .
T Consensus 187 ~~~~i~v~~v~PG~i~t~~~------------~~~~~~~~~~-~--------~~~~~~~~~~d~a~~~~~l~s~~~~--~ 243 (256)
T PRK12859 187 AHLGITVNAINPGPTDTGWM------------TEEIKQGLLP-M--------FPFGRIGEPKDAARLIKFLASEEAE--W 243 (256)
T ss_pred hhhCeEEEEEEEccccCCCC------------CHHHHHHHHh-c--------CCCCCCcCHHHHHHHHHHHhCcccc--C
Confidence 279999999997744311 0111111111 0 0112355789999999888755322 1
Q ss_pred CCceEEEecCC
Q psy7542 351 NTMRVINLTAN 361 (762)
Q Consensus 351 ~~~~iyNi~s~ 361 (762)
..++++.+.++
T Consensus 244 ~~G~~i~~dgg 254 (256)
T PRK12859 244 ITGQIIHSEGG 254 (256)
T ss_pred ccCcEEEeCCC
Confidence 13566666544
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.3e-11 Score=123.24 Aligned_cols=219 Identities=13% Similarity=0.074 Sum_probs=142.8
Q ss_pred cCCCEEEEECCC--ChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGAS--GFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGAT--GFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
++||+++||||+ +-||..++++|++. |.+|++..|.. ...+.++++ ...++..+.+
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~--G~~Vi~~~r~~---~~~~~~~~~-----------------~~~~~~~~~~ 62 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQ--GATVIYTYQND---RMKKSLQKL-----------------VDEEDLLVEC 62 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHC--CCEEEEecCch---HHHHHHHhh-----------------ccCceeEEeC
Confidence 578999999999 79999999999998 77888888752 122222221 1135788999
Q ss_pred ecCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-----------cccHHHHHHHhHHHHHHHHHHHHHc-CCc
Q psy7542 137 DVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-----------DDYMQTYVFLNTRGTRDMLNLSKQM-IHL 197 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-----------~~~l~~~~~~NV~GT~~LLelA~~~-~~l 197 (762)
|+++++ ++++++ ..+|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-
T Consensus 63 Dl~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~ 136 (252)
T PRK06079 63 DVASDE------SIERAFATIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPG 136 (252)
T ss_pred CCCCHH------HHHHHHHHHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccC
Confidence 999875 443332 458999999986431 1346678899999999988887642 222
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----c
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----A 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~ 273 (762)
.++|++||..+.... | ....|+.||+..+.+.+..+. .
T Consensus 137 g~Iv~iss~~~~~~~----------~----------------------------~~~~Y~asKaal~~l~~~la~el~~~ 178 (252)
T PRK06079 137 ASIVTLTYFGSERAI----------P----------------------------NYNVMGIAKAALESSVRYLARDLGKK 178 (252)
T ss_pred ceEEEEeccCccccC----------C----------------------------cchhhHHHHHHHHHHHHHHHHHhhhc
Confidence 579999987543211 0 015799999999998887765 3
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+.+..+.||.|-.+... .......+...... .. + ...+...+|+|+++..++...... ..+
T Consensus 179 gI~vn~i~PG~v~T~~~~-------~~~~~~~~~~~~~~-~~---p-----~~r~~~pedva~~~~~l~s~~~~~--itG 240 (252)
T PRK06079 179 GIRVNAISAGAVKTLAVT-------GIKGHKDLLKESDS-RT---V-----DGVGVTIEEVGNTAAFLLSDLSTG--VTG 240 (252)
T ss_pred CcEEEEEecCcccccccc-------cCCChHHHHHHHHh-cC---c-----ccCCCCHHHHHHHHHHHhCccccc--ccc
Confidence 899999999988554211 11111112221111 11 1 123677899999999888654321 135
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
++..+.++
T Consensus 241 ~~i~vdgg 248 (252)
T PRK06079 241 DIIYVDKG 248 (252)
T ss_pred cEEEeCCc
Confidence 56655544
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.4e-11 Score=125.73 Aligned_cols=223 Identities=11% Similarity=0.048 Sum_probs=140.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCC---cchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKN---KNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~---~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
+++|+++||||+|.||..++++|++. +.+|+++.|.... ....++++++.+ .++ ....++.++.
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~--G~~vii~~~~~~~~~~~~~~~~~~~~~~-----~l~------~~~~~~~~~~ 70 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAE--GARVVVNDIGVGLDGSASGGSAAQAVVD-----EIV------AAGGEAVANG 70 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEeeCCccccccccchhHHHHHHH-----HHH------hcCCceEEEe
Confidence 57899999999999999999999998 6677777765310 001122222211 111 1124678899
Q ss_pred eecCCCCCCCCHHHHHhh-------cCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc----C--
Q psy7542 136 GDVAVPDLGISAEDRQML-------SETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM----I-- 195 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l-------~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~----~-- 195 (762)
+|+++++ ++..+ ...+|++||+|+.... .+.+...+++|+.|+..+++++... .
T Consensus 71 ~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ 144 (286)
T PRK07791 71 DDIADWD------GAANLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKA 144 (286)
T ss_pred CCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhccc
Confidence 9999875 33332 2468999999997531 1456778999999999988877531 0
Q ss_pred ---CccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH
Q psy7542 196 ---HLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME 272 (762)
Q Consensus 196 ---~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~ 272 (762)
.-.++|++||..+.... |. ...|+.||+..+.+++..+.
T Consensus 145 ~~~~~g~Iv~isS~~~~~~~----------~~----------------------------~~~Y~asKaal~~l~~~la~ 186 (286)
T PRK07791 145 GRAVDARIINTSSGAGLQGS----------VG----------------------------QGNYSAAKAGIAALTLVAAA 186 (286)
T ss_pred CCCCCcEEEEeCchhhCcCC----------CC----------------------------chhhHHHHHHHHHHHHHHHH
Confidence 01489999997543211 00 14799999999888877655
Q ss_pred ----cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCC
Q psy7542 273 ----AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSN 348 (762)
Q Consensus 273 ----~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~ 348 (762)
.|+.+..+.|| +..+... ........ .. +.........+|+|++++.++.....
T Consensus 187 el~~~gIrVn~v~Pg-~~T~~~~-------------~~~~~~~~-~~------~~~~~~~~~pedva~~~~~L~s~~~~- 244 (286)
T PRK07791 187 ELGRYGVTVNAIAPA-ARTRMTE-------------TVFAEMMA-KP------EEGEFDAMAPENVSPLVVWLGSAESR- 244 (286)
T ss_pred HHHHhCeEEEEECCC-CCCCcch-------------hhHHHHHh-cC------cccccCCCCHHHHHHHHHHHhCchhc-
Confidence 38999999998 3211100 01111110 00 01112356789999999988765332
Q ss_pred CCCCceEEEecCC
Q psy7542 349 PGNTMRVINLTAN 361 (762)
Q Consensus 349 ~~~~~~iyNi~s~ 361 (762)
...++++.+.++
T Consensus 245 -~itG~~i~vdgG 256 (286)
T PRK07791 245 -DVTGKVFEVEGG 256 (286)
T ss_pred -CCCCcEEEEcCC
Confidence 114677777666
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-10 Score=122.23 Aligned_cols=230 Identities=17% Similarity=0.093 Sum_probs=142.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++|+||||+|.||..+++.|++. +.+|+++.|... +++++. +.+. .....++..+.+|+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~--G~~V~~~~r~~~------~~~~~~-----~~l~-----~~~~~~~~~~~~D~ 66 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAE--GCHLHLVARDAD------ALEALA-----ADLR-----AAHGVDVAVHALDL 66 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCCHH------HHHHHH-----HHHH-----hhcCCceEEEEecC
Confidence 47899999999999999999999998 678899988642 222111 0011 11135688899999
Q ss_pred CCCCCCCCHHHHHhhc---CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH-c--CCccEEEEEeC
Q psy7542 139 AVPDLGISAEDRQMLS---ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ-M--IHLQLFVYVST 205 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~---~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~-~--~~lk~fV~vSS 205 (762)
++++ ++..++ ..+|++||+|+.... .+.+...+++|+.|...+++.+.. + .+-.++|++||
T Consensus 67 ~~~~------~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss 140 (259)
T PRK06125 67 SSPE------AREQLAAEAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIG 140 (259)
T ss_pred CCHH------HHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 9865 444433 468999999996531 134667899999999998887642 1 12357999988
Q ss_pred CcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEe
Q psy7542 206 AYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILR 281 (762)
Q Consensus 206 ay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvR 281 (762)
..+.... +. ...|+.+|+..+.+++..+. .|++++.+.
T Consensus 141 ~~~~~~~----------~~----------------------------~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~ 182 (259)
T PRK06125 141 AAGENPD----------AD----------------------------YICGSAGNAALMAFTRALGGKSLDDGVRVVGVN 182 (259)
T ss_pred ccccCCC----------CC----------------------------chHhHHHHHHHHHHHHHHHHHhCccCeEEEEEe
Confidence 7442110 00 14689999999888887654 289999999
Q ss_pred eeeeccCCCCCC-CCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 282 PSIIIPIWKDPL-PGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 282 Ps~V~G~~~eP~-pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
||.|-.+..... +.......+........... . ....+.+++|+|++++.++..... ...+.++.+.+
T Consensus 183 PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~va~~~~~l~~~~~~--~~~G~~i~vdg 251 (259)
T PRK06125 183 PGPVATDRMLTLLKGRARAELGDESRWQELLAG----L-----PLGRPATPEEVADLVAFLASPRSG--YTSGTVVTVDG 251 (259)
T ss_pred cCccccHHHHHHHHhhhhcccCCHHHHHHHhcc----C-----CcCCCcCHHHHHHHHHHHcCchhc--cccCceEEecC
Confidence 997755421100 00000000000011111100 0 112367889999999888754322 11466777765
Q ss_pred C
Q psy7542 361 N 361 (762)
Q Consensus 361 ~ 361 (762)
+
T Consensus 252 g 252 (259)
T PRK06125 252 G 252 (259)
T ss_pred C
Confidence 5
|
|
| >cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.9e-12 Score=116.09 Aligned_cols=89 Identities=20% Similarity=0.250 Sum_probs=73.8
Q ss_pred CCCeEEEEEEEEEcC-----eEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhhh
Q psy7542 533 EKPYYVYVIHVRMFQ-----QHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQWL 607 (762)
Q Consensus 533 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
.++|++|.|++.... ..|.|.||||||..||+ ++++.+..
T Consensus 15 ~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~-----------------------------~L~~~~~~------ 59 (112)
T cd06861 15 TSAHTVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYR-----------------------------QLQNNHPG------ 59 (112)
T ss_pred ccCeEEEEEEEEeCCCCCCCCccEEEeehHHHHHHHH-----------------------------HHHHHCCC------
Confidence 478999999999753 58999999999999998 56555422
Q ss_pred cccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC-CCChhHHHHHHHHHHHHHHHHHhcCCCh--HHHH
Q psy7542 608 GLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR-SNQPKVLDERRHLLEIYLKEMFKFGPSR--NQVL 684 (762)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 684 (762)
...|.+|+|++. +.+++++|+||++||.||+.+...+..+ ..+.
T Consensus 60 ---------------------------------~~iP~lP~K~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~ 106 (112)
T cd06861 60 ---------------------------------VIVPPPPEKQSVGRFDDNFVEQRRAALEKMLRKIANHPVLQKDPDFR 106 (112)
T ss_pred ---------------------------------CccCCCCCcccccCCCHHHHHHHHHHHHHHHHHHHCCcccccCcHHH
Confidence 257889999864 5789999999999999999999887655 8899
Q ss_pred hhhCC
Q psy7542 685 AFLGV 689 (762)
Q Consensus 685 ~~~~~ 689 (762)
+||.-
T Consensus 107 ~FL~~ 111 (112)
T cd06861 107 LFLES 111 (112)
T ss_pred HhcCC
Confidence 99863
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P |
| >cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2 | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.9e-12 Score=118.49 Aligned_cols=90 Identities=23% Similarity=0.414 Sum_probs=72.4
Q ss_pred CCCeEEEEEEEEEc-----CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhhh
Q psy7542 533 EKPYYVYVIHVRMF-----QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQWL 607 (762)
Q Consensus 533 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
.++|++|.|++... ...|.|.||||||..||+ ++++.+.+
T Consensus 15 ~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~-----------------------------~L~~~~~~------ 59 (124)
T cd07282 15 MNAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHS-----------------------------KLASKYLH------ 59 (124)
T ss_pred ccCeEEEEEEeccCCCccCCCceEEEEehHHHHHHHH-----------------------------HHHHhCCC------
Confidence 47899999998743 368999999999999998 66666521
Q ss_pred cccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCC-----------CChhHHHHHHHHHHHHHHHHHhc
Q psy7542 608 GLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRS-----------NQPKVLDERRHLLEIYLKEMFKF 676 (762)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 676 (762)
...-.|.+|+|++.+ .+++++|+||.+||.||+.+...
T Consensus 60 -------------------------------~g~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~ 108 (124)
T cd07282 60 -------------------------------VGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKH 108 (124)
T ss_pred -------------------------------CCceeCCCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC
Confidence 001378899998743 47899999999999999999988
Q ss_pred CCCh--HHHHhhhC
Q psy7542 677 GPSR--NQVLAFLG 688 (762)
Q Consensus 677 ~~~~--~~~~~~~~ 688 (762)
+.-+ ..|.+||.
T Consensus 109 p~l~~s~~~~~FL~ 122 (124)
T cd07282 109 PTLLQDPDLRQFLE 122 (124)
T ss_pred cccccChHHHHhhc
Confidence 7666 88999986
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort |
| >KOG1259|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-12 Score=133.51 Aligned_cols=90 Identities=32% Similarity=0.555 Sum_probs=77.6
Q ss_pred CCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhhhccccc
Q psy7542 533 EKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQWLGLNNV 612 (762)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (762)
-..|++|.|.|+.....|.|++||++|+.+|+ +|..+|+--|+.
T Consensus 24 ~~~~t~y~i~v~~g~~ew~v~~ry~df~~lhe----------------------klv~e~~i~k~l-------------- 67 (490)
T KOG1259|consen 24 SGGVTYYDIKVRVGKVEWLVERRYRDFANLHE----------------------KLVGEISISKKL-------------- 67 (490)
T ss_pred cCceEEEEEEEEecceeeeehhhhhHHHHHHH----------------------Hhhhhheecccc--------------
Confidence 35699999999999999999999999999998 788877655554
Q ss_pred ccCCCCcccccchhhhhccccccccccCCCCCCCCCCc-CCCCChhHHHHHHHHHHHHHHHHHhcCCCh--HHHHhhhCC
Q psy7542 613 LWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKK-IRSNQPKVLDERRHLLEIYLKEMFKFGPSR--NQVLAFLGV 689 (762)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 689 (762)
+|||| |.++||.++|+||+.||+|||+++-..+.. +.+..||.+
T Consensus 68 ---------------------------------lppkk~ig~~~~s~~e~r~~~leiylq~ll~~f~~~~pr~la~fl~f 114 (490)
T KOG1259|consen 68 ---------------------------------LPPKKLVGNKQPSFLEQRREQLEIYLQELLIYFRTELPRALAEFLDF 114 (490)
T ss_pred ---------------------------------CCchhhcCCCChhHHHHHHHHHHHHHHHHHHHccccCHHHHHHHhcc
Confidence 47777 589999999999999999999998766555 888889988
Q ss_pred CC
Q psy7542 690 NS 691 (762)
Q Consensus 690 ~~ 691 (762)
|.
T Consensus 115 ~~ 116 (490)
T KOG1259|consen 115 NK 116 (490)
T ss_pred ch
Confidence 73
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.7e-11 Score=129.15 Aligned_cols=175 Identities=11% Similarity=0.160 Sum_probs=117.3
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.|++++||||||+||++++++|++. |.+|+++.|.. ++++++.+ .++... ...++..+.+|++
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~--G~~Vil~~R~~------~~l~~~~~-----~l~~~~----~~~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARK--GLNLVLVARNP------DKLKDVSD-----SIQSKY----SKTQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHC--CCCEEEEECCH------HHHHHHHH-----HHHHHC----CCcEEEEEEEECC
Confidence 4899999999999999999999998 66788899864 23333211 111110 1236778889998
Q ss_pred CCCCCCCHHHHHhhcC--CccEEEEcccccC-----cc----ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEEeC
Q psy7542 140 VPDLGISAEDRQMLSE--TIHIVYHIAATVR-----FD----DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVST 205 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~--~vDiViH~AA~v~-----f~----~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vSS 205 (762)
+. +.-..+.+.+.+. ++|++||+||... +. +.++..+++|+.|+..+.+++... .+..++|++||
T Consensus 115 ~~-~~~~~~~l~~~~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS 193 (320)
T PLN02780 115 GD-IDEGVKRIKETIEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGS 193 (320)
T ss_pred CC-cHHHHHHHHHHhcCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 52 1000112333333 3669999999742 11 235568999999999999887531 24468999999
Q ss_pred CcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEe
Q psy7542 206 AYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILR 281 (762)
Q Consensus 206 ay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvR 281 (762)
..+.... +.|. ...|+.||+..+.+.+..+. .|+.++++.
T Consensus 194 ~a~~~~~--------~~p~----------------------------~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~ 237 (320)
T PLN02780 194 GAAIVIP--------SDPL----------------------------YAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQV 237 (320)
T ss_pred hhhccCC--------CCcc----------------------------chHHHHHHHHHHHHHHHHHHHHhccCeEEEEEe
Confidence 8653210 0011 15799999999988877665 289999999
Q ss_pred eeeeccC
Q psy7542 282 PSIIIPI 288 (762)
Q Consensus 282 Ps~V~G~ 288 (762)
||.|-.+
T Consensus 238 PG~v~T~ 244 (320)
T PLN02780 238 PLYVATK 244 (320)
T ss_pred eCceecC
Confidence 9987443
|
|
| >KOG1205|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.7e-11 Score=128.29 Aligned_cols=156 Identities=21% Similarity=0.213 Sum_probs=113.9
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
+.+.||+|+|||||..||.+++.+|.+. |.+++.++|.... .+++.+. +++.. + ..++.++++
T Consensus 8 e~~~~kvVvITGASsGIG~~lA~~la~~--G~~l~lvar~~rr---l~~v~~~--------l~~~~--~--~~~v~~~~~ 70 (282)
T KOG1205|consen 8 ERLAGKVVLITGASSGIGEALAYELAKR--GAKLVLVARRARR---LERVAEE--------LRKLG--S--LEKVLVLQL 70 (282)
T ss_pred HHhCCCEEEEeCCCcHHHHHHHHHHHhC--CCceEEeehhhhh---HHHHHHH--------HHHhC--C--cCccEEEeC
Confidence 3468999999999999999999999999 7777788886532 2333111 11111 1 127999999
Q ss_pred ecCCCCCCCCHHHHH-------hhcCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccE
Q psy7542 137 DVAVPDLGISAEDRQ-------MLSETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQL 199 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~-------~l~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~ 199 (762)
|+++.+ +.. ..+.++|+.||+||.... .+..+..+++|+.|+..+.+++... .+-.+
T Consensus 71 Dvs~~~------~~~~~~~~~~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~Gh 144 (282)
T KOG1205|consen 71 DVSDEE------SVKKFVEWAIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGH 144 (282)
T ss_pred ccCCHH------HHHHHHHHHHHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCe
Confidence 999976 444 345689999999998652 1345668999999999998888642 13368
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA 273 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~ 273 (762)
+|.+||+.+.... |. ...|..||++-+.+....+..
T Consensus 145 IVvisSiaG~~~~----------P~----------------------------~~~Y~ASK~Al~~f~etLR~E 180 (282)
T KOG1205|consen 145 IVVISSIAGKMPL----------PF----------------------------RSIYSASKHALEGFFETLRQE 180 (282)
T ss_pred EEEEeccccccCC----------Cc----------------------------ccccchHHHHHHHHHHHHHHH
Confidence 9999999765321 11 147999999999998888774
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-11 Score=127.69 Aligned_cols=162 Identities=12% Similarity=0.081 Sum_probs=112.4
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|+||||||+||+.++++|++. +.+|+++.|... +++.++. .....+++++.+|++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~--g~~V~~~~r~~~-----~~~~~~~--------------~~~~~~~~~~~~D~~~~ 60 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEK--GTHVISISRTEN-----KELTKLA--------------EQYNSNLTFHSLDLQDV 60 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhc--CCEEEEEeCCch-----HHHHHHH--------------hccCCceEEEEecCCCH
Confidence 58999999999999999999998 668898988642 2232221 11235788999999987
Q ss_pred CCCCCHHHHHhhcCCc-----------cEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHH----cCCcc
Q psy7542 142 DLGISAEDRQMLSETI-----------HIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQ----MIHLQ 198 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~v-----------DiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~----~~~lk 198 (762)
+ +++.+++++ .++||+||.... .+.+...+++|+.|+..+++.+.. .+..+
T Consensus 61 ~------~~~~~~~~~~~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 134 (251)
T PRK06924 61 H------ELETNFNEILSSIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDK 134 (251)
T ss_pred H------HHHHHHHHHHHhcCcccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCc
Confidence 6 454444321 278999987532 133556788899997766665543 22346
Q ss_pred EEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-----
Q psy7542 199 LFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----- 273 (762)
Q Consensus 199 ~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----- 273 (762)
+||++||..+.... +. -..|+.+|+..|.+++..+..
T Consensus 135 ~iv~~sS~~~~~~~----------~~----------------------------~~~Y~~sKaa~~~~~~~la~e~~~~~ 176 (251)
T PRK06924 135 RVINISSGAAKNPY----------FG----------------------------WSAYCSSKAGLDMFTQTVATEQEEEE 176 (251)
T ss_pred eEEEecchhhcCCC----------CC----------------------------cHHHhHHHHHHHHHHHHHHHHhhhcC
Confidence 89999997543211 00 157999999999999877542
Q ss_pred -CCCEEEEeeeeeccC
Q psy7542 274 -GMPCMILRPSIIIPI 288 (762)
Q Consensus 274 -glpv~IvRPs~V~G~ 288 (762)
++.+..++||.|-.+
T Consensus 177 ~~i~v~~v~Pg~v~t~ 192 (251)
T PRK06924 177 YPVKIVAFSPGVMDTN 192 (251)
T ss_pred CCeEEEEecCCccccH
Confidence 688999999877543
|
|
| >cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18 | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.7e-12 Score=117.73 Aligned_cols=90 Identities=17% Similarity=0.299 Sum_probs=76.1
Q ss_pred CCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhhhcccc
Q psy7542 532 CEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQWLGLNN 611 (762)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (762)
..++|++|.|++.. ..|.|.||||||..||+ ++++.++.
T Consensus 16 g~~~y~~Y~I~~~~--~~~~V~RRYsdF~~L~~-----------------------------~L~~~~p~---------- 54 (125)
T cd06862 16 GLKSFIAYQITPTH--TNVTVSRRYKHFDWLYE-----------------------------RLVEKYSC---------- 54 (125)
T ss_pred CCcCEEEEEEEEec--CcEEEEEecHHHHHHHH-----------------------------HHHHHCCC----------
Confidence 45899999999864 67999999999999998 66665522
Q ss_pred cccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-CCCChhHHHHHHHHHHHHHHHHHhcCCCh--HHHHhhhC
Q psy7542 612 VLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-RSNQPKVLDERRHLLEIYLKEMFKFGPSR--NQVLAFLG 688 (762)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 688 (762)
...|.+|+|++ .++++.++++||.+||.||+.++..+.-+ ..+.+||.
T Consensus 55 -----------------------------~~iPplP~K~~~~~~~~~fie~Rr~~Le~fL~~I~~~p~l~~s~~~~~FL~ 105 (125)
T cd06862 55 -----------------------------IAIPPLPEKQVTGRFEEDFIEKRRERLELWMNRLARHPVLSQSEVFRHFLT 105 (125)
T ss_pred -----------------------------CCCCCCCCCccccCCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHcC
Confidence 26889999997 46799999999999999999998877665 89999999
Q ss_pred CCC
Q psy7542 689 VNS 691 (762)
Q Consensus 689 ~~~ 691 (762)
..+
T Consensus 106 ~~~ 108 (125)
T cd06862 106 CTD 108 (125)
T ss_pred Ccc
Confidence 874
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca |
| >cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.1e-12 Score=117.78 Aligned_cols=100 Identities=22% Similarity=0.329 Sum_probs=77.6
Q ss_pred ccccceeee-cCCCCeEEEEEEEEEc-----CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHH
Q psy7542 522 ISVSGYRLI-ECEKPYYVYVIHVRMF-----QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQK 595 (762)
Q Consensus 522 ~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (762)
|+|+..+.. +..++|++|.|+++.. ...|.|.||||||..||+ ++
T Consensus 4 i~V~dP~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~-----------------------------~L 54 (123)
T cd06894 4 IDVVNPQTHGVGKKRFTDYEVRMRTNLPVFKKKESSVRRRYSDFEWLRS-----------------------------EL 54 (123)
T ss_pred EEEeCCcEecCCCcCEEEEEEEEecCCcccccCccEEEecCHHHHHHHH-----------------------------HH
Confidence 444444433 3468999999999844 467899999999999998 33
Q ss_pred hhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC----------CCCChhHHHHHHHH
Q psy7542 596 KRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI----------RSNQPKVLDERRHL 665 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 665 (762)
++..+. ..|.+|+|++ .+.+++++|+||++
T Consensus 55 ~~~~~~----------------------------------------~iPpLP~K~~~~~~~~~~~~~~~~~~fie~Rr~~ 94 (123)
T cd06894 55 ERDSKI----------------------------------------VVPPLPGKALKRQLPFRGDDGIFEEEFIEERRKG 94 (123)
T ss_pred HHcCCC----------------------------------------ccCCCCCCceecccccccccCCCCHHHHHHHHHH
Confidence 332222 6889999986 35789999999999
Q ss_pred HHHHHHHHHhcCCCh--HHHHhhhCCC
Q psy7542 666 LEIYLKEMFKFGPSR--NQVLAFLGVN 690 (762)
Q Consensus 666 ~~~~~~~~~~~~~~~--~~~~~~~~~~ 690 (762)
||.||+.+.....-+ ..+.+||.-.
T Consensus 95 L~~fL~~i~~hp~l~~s~~~~~FL~~~ 121 (123)
T cd06894 95 LETFINKVAGHPLAQNEKCLHMFLQEE 121 (123)
T ss_pred HHHHHHHHHcChhhccCCHHHHhcCCC
Confidence 999999998876555 8899999754
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the |
| >cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19 | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.8e-12 Score=115.63 Aligned_cols=91 Identities=23% Similarity=0.284 Sum_probs=73.4
Q ss_pred CCCCeEEEEEEEEE-----cCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhh
Q psy7542 532 CEKPYYVYVIHVRM-----FQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQW 606 (762)
Q Consensus 532 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
..+.|++|.|.++. ....|.|.||||||..||+ ++++.++.
T Consensus 15 g~~~y~~Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~-----------------------------~L~~~~~~----- 60 (116)
T cd07295 15 GRGMFTDYEIVCRTNIPAFKLRVSSVRRRYSDFEYFRD-----------------------------ILERESPR----- 60 (116)
T ss_pred CCCCEEEEEEEEEeCCccccccceEEecChhHHHHHHH-----------------------------HHHHHCCC-----
Confidence 35899999999873 3457889999999999998 55554422
Q ss_pred hcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-CCCChhHHHHHHHHHHHHHHHHHhcCCCh---HH
Q psy7542 607 LGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-RSNQPKVLDERRHLLEIYLKEMFKFGPSR---NQ 682 (762)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 682 (762)
...|.+|+|.+ .+.+++++|+||++||.||+.+.....-+ ..
T Consensus 61 ----------------------------------~~iPplP~K~~~~~~~~~~ie~Rr~~Le~fL~~i~~~p~l~~~s~~ 106 (116)
T cd07295 61 ----------------------------------VMIPPLPGKIFTNRFSDEVIEERRQGLETFLQSVAGHPLLQTGSKV 106 (116)
T ss_pred ----------------------------------CccCCCCCCccccCCCHHHHHHHHHHHHHHHHHHhcCHhhhhCCHH
Confidence 25788999987 45789999999999999999999866544 56
Q ss_pred HHhhhCCC
Q psy7542 683 VLAFLGVN 690 (762)
Q Consensus 683 ~~~~~~~~ 690 (762)
+.+||..+
T Consensus 107 ~~~FL~~~ 114 (116)
T cd07295 107 LAAFLQDP 114 (116)
T ss_pred HHHhcCCC
Confidence 88999876
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer. |
| >KOG2774|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-11 Score=123.01 Aligned_cols=251 Identities=18% Similarity=0.129 Sum_probs=168.1
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.-+||||||-|.+|..++..|... .|- .|++-+--+... ...+.--++..|+
T Consensus 43 ~~PrvLITG~LGQLG~~~A~LLR~~-yGs~~VILSDI~KPp~-------------------------~V~~~GPyIy~DI 96 (366)
T KOG2774|consen 43 KAPRVLITGSLGQLGRGLASLLRYM-YGSECVILSDIVKPPA-------------------------NVTDVGPYIYLDI 96 (366)
T ss_pred CCCeEEEecchHHHhHHHHHHHHHH-hCCccEehhhccCCch-------------------------hhcccCCchhhhh
Confidence 4568999999999999998766655 354 444332222211 1122334667788
Q ss_pred CCCCCCCCHHHHHhhcC--CccEEEEcccccCc--cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcc
Q psy7542 139 AVPDLGISAEDRQMLSE--TIHIVYHIAATVRF--DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKV 214 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~--~vDiViH~AA~v~f--~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~ 214 (762)
.|.. .++++.- .+|..||..|..+. +.+..-+.++|+.|..|+++.|++. +++-| .-||+.+.++..+
T Consensus 97 LD~K------~L~eIVVn~RIdWL~HfSALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~-kL~iF-VPSTIGAFGPtSP 168 (366)
T KOG2774|consen 97 LDQK------SLEEIVVNKRIDWLVHFSALLSAVGETNVPLALQVNIRGVHNILQVAAKH-KLKVF-VPSTIGAFGPTSP 168 (366)
T ss_pred hccc------cHHHhhcccccceeeeHHHHHHHhcccCCceeeeecchhhhHHHHHHHHc-CeeEe-ecccccccCCCCC
Confidence 7755 4566543 58999999886542 2333457889999999999999998 66544 3577777776543
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPL 293 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~ 293 (762)
-..+ +... +...-..|+.||.-||-+-..+..+ |+....+|...+++... |-
T Consensus 169 RNPT---Pdlt-----------------------IQRPRTIYGVSKVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~-pg 221 (366)
T KOG2774|consen 169 RNPT---PDLT-----------------------IQRPRTIYGVSKVHAELLGEYFNHRFGVDFRSMRFPGIISATK-PG 221 (366)
T ss_pred CCCC---CCee-----------------------eecCceeechhHHHHHHHHHHHHhhcCccceecccCcccccCC-CC
Confidence 2110 0000 1111267999999999888777776 99999999887776643 33
Q ss_pred CCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHH
Q psy7542 294 PGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIE 373 (762)
Q Consensus 294 pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~ 373 (762)
.|-+| +...-+..+..+|+-. .+-.++.+..+++..||..+++..+..+... -..++||++. -..|-.|+++
T Consensus 222 ggttd--ya~A~f~~Al~~gk~t-Cylrpdtrlpmmy~~dc~~~~~~~~~a~~~~--lkrr~ynvt~---~sftpee~~~ 293 (366)
T KOG2774|consen 222 GGTTD--YAIAIFYDALQKGKHT-CYLRPDTRLPMMYDTDCMASVIQLLAADSQS--LKRRTYNVTG---FSFTPEEIAD 293 (366)
T ss_pred CCcch--hHHHHHHHHHHcCCcc-cccCCCccCceeehHHHHHHHHHHHhCCHHH--hhhheeeece---eccCHHHHHH
Confidence 33322 2222233344455543 3446788999999999999999887766442 1357999987 4689999999
Q ss_pred HHHHhh
Q psy7542 374 NGKDIA 379 (762)
Q Consensus 374 ~i~~~~ 379 (762)
.+.+..
T Consensus 294 ~~~~~~ 299 (366)
T KOG2774|consen 294 AIRRVM 299 (366)
T ss_pred HHHhhC
Confidence 998887
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-10 Score=128.72 Aligned_cols=107 Identities=19% Similarity=0.185 Sum_probs=81.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+|+||||||+||++++++|++. |.+|+++.|... ++.+... ....++..+.+|+
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~--G~~Vi~l~r~~~------~l~~~~~--------------~~~~~v~~v~~Dv 233 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQ--GAKVVALTSNSD------KITLEIN--------------GEDLPVKTLHWQV 233 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHh--------------hcCCCeEEEEeeC
Confidence 46899999999999999999999998 778888888532 2221110 0113467889999
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCc----cccHHHHHHHhHHHHHHHHHHHHH
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRF----DDYMQTYVFLNTRGTRDMLNLSKQ 193 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f----~~~l~~~~~~NV~GT~~LLelA~~ 193 (762)
++++ ++.+.+.++|++||+||.... .+.++..+++|+.|+.++++++..
T Consensus 234 sd~~------~v~~~l~~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp 286 (406)
T PRK07424 234 GQEA------ALAELLEKVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFT 286 (406)
T ss_pred CCHH------HHHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9865 677778899999999986432 134567899999999999999754
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.7e-10 Score=121.77 Aligned_cols=221 Identities=13% Similarity=0.048 Sum_probs=141.0
Q ss_pred cCCCEEEEECCC--ChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGAS--GFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGAT--GFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
++||+++||||+ +.||..++++|++. +.+|++..|..+. .+.++++.+ + ...+.++.+
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~--G~~v~l~~r~~~~---~~~~~~~~~---------~------~~~~~~~~~ 67 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRAL--GAELAVTYLNDKA---RPYVEPLAE---------E------LDAPIFLPL 67 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHc--CCEEEEEeCChhh---HHHHHHHHH---------h------hccceEEec
Confidence 478999999998 59999999999998 6778888886421 222333211 1 123457889
Q ss_pred ecCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-----------cccHHHHHHHhHHHHHHHHHHHHH-cCCc
Q psy7542 137 DVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-----------DDYMQTYVFLNTRGTRDMLNLSKQ-MIHL 197 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-----------~~~l~~~~~~NV~GT~~LLelA~~-~~~l 197 (762)
|+++++ ++++++ ..+|++||+|+.... .+.++..+++|+.|+..+++.+.. +..-
T Consensus 68 D~~~~~------~v~~~~~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~ 141 (258)
T PRK07533 68 DVREPG------QLEAVFARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNG 141 (258)
T ss_pred CcCCHH------HHHHHHHHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccC
Confidence 999876 444332 458999999986421 134667899999999999987754 2222
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----c
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----A 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~ 273 (762)
.++|++||..+.... |. ...|+.||+..+.+.+..+. .
T Consensus 142 g~Ii~iss~~~~~~~----------~~----------------------------~~~Y~asKaal~~l~~~la~el~~~ 183 (258)
T PRK07533 142 GSLLTMSYYGAEKVV----------EN----------------------------YNLMGPVKAALESSVRYLAAELGPK 183 (258)
T ss_pred CEEEEEeccccccCC----------cc----------------------------chhhHHHHHHHHHHHHHHHHHhhhc
Confidence 478999987442110 00 15799999998888877655 3
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+.+..+.||.|-.+.... + ............ . .....+...+|+|++++.++..... ...+
T Consensus 184 gI~Vn~v~PG~v~T~~~~~---~----~~~~~~~~~~~~-~--------~p~~r~~~p~dva~~~~~L~s~~~~--~itG 245 (258)
T PRK07533 184 GIRVHAISPGPLKTRAASG---I----DDFDALLEDAAE-R--------APLRRLVDIDDVGAVAAFLASDAAR--RLTG 245 (258)
T ss_pred CcEEEEEecCCcCChhhhc---c----CCcHHHHHHHHh-c--------CCcCCCCCHHHHHHHHHHHhChhhc--cccC
Confidence 8999999999875542111 0 001111111111 0 0112356789999999988765322 1135
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++.+.++
T Consensus 246 ~~i~vdgg 253 (258)
T PRK07533 246 NTLYIDGG 253 (258)
T ss_pred cEEeeCCc
Confidence 66666544
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-10 Score=122.12 Aligned_cols=107 Identities=20% Similarity=0.145 Sum_probs=81.0
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
..+++++++||||+|+||++++++|++. +.+|+++.|.... ++... . ......+.+
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~--G~~Vi~~~r~~~~-----~~~~~---------------~--~~~~~~~~~ 65 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAK--GAKVIGLTHSKIN-----NSESN---------------D--ESPNEWIKW 65 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEECCchh-----hhhhh---------------c--cCCCeEEEe
Confidence 4468899999999999999999999998 6788888886521 11110 0 011256789
Q ss_pred ecCCCCCCCCHHHHHhhcCCccEEEEcccccCc----cccHHHHHHHhHHHHHHHHHHHHH
Q psy7542 137 DVAVPDLGISAEDRQMLSETIHIVYHIAATVRF----DDYMQTYVFLNTRGTRDMLNLSKQ 193 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f----~~~l~~~~~~NV~GT~~LLelA~~ 193 (762)
|+++.+ ++...+.++|++||+||.... .+.+...+++|+.|+.++++.+..
T Consensus 66 D~~~~~------~~~~~~~~iDilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~ 120 (245)
T PRK12367 66 ECGKEE------SLDKQLASLDVLILNHGINPGGRQDPENINKALEINALSSWRLLELFED 120 (245)
T ss_pred eCCCHH------HHHHhcCCCCEEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 998765 677777889999999996432 245677899999999999998764
|
|
| >cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=115.73 Aligned_cols=100 Identities=19% Similarity=0.295 Sum_probs=77.5
Q ss_pred cccccceeeecCCCCeEEEEEEEEEcC-----eEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHH
Q psy7542 521 CISVSGYRLIECEKPYYVYVIHVRMFQ-----QHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQK 595 (762)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (762)
+|..+.....+..++|++|.|+|.... ..|.|.||||||..||+ ++
T Consensus 4 ~V~dP~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~-----------------------------~L 54 (118)
T cd06863 4 LVSDPQKELDGSSDTYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHE-----------------------------CL 54 (118)
T ss_pred EEeCcccccCCCccCEEEEEEEEeeCCCCcccCceEEEecHHHHHHHHH-----------------------------HH
Confidence 333333333245689999999998654 57999999999999998 56
Q ss_pred hhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC------CCChhHHHHHHHHHHHH
Q psy7542 596 KRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR------SNQPKVLDERRHLLEIY 669 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 669 (762)
++.+.. ...|.+|+|+.. +.+++++++||++||.|
T Consensus 55 ~~~~p~---------------------------------------~~iPplP~K~~~~~~~~~~~~~~~ie~Rr~~Le~f 95 (118)
T cd06863 55 SNDFPA---------------------------------------CVVPPLPDKHRLEYITGDRFSPEFITRRAQSLQRF 95 (118)
T ss_pred HHHCcC---------------------------------------CcCCCCCCccccccccccCCCHHHHHHHHHHHHHH
Confidence 555522 257899999852 45899999999999999
Q ss_pred HHHHHhcCCCh--HHHHhhhC
Q psy7542 670 LKEMFKFGPSR--NQVLAFLG 688 (762)
Q Consensus 670 ~~~~~~~~~~~--~~~~~~~~ 688 (762)
|+.+.....-+ ..+..||.
T Consensus 96 L~~i~~~p~l~~s~~l~~FL~ 116 (118)
T cd06863 96 LRRISLHPVLSQSKILHQFLE 116 (118)
T ss_pred HHHHhcCcccccCcHHHhhcC
Confidence 99999877555 88999984
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. |
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-10 Score=122.26 Aligned_cols=222 Identities=14% Similarity=0.080 Sum_probs=140.0
Q ss_pred ccCCCEEEEECC--CChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 58 TLEHKNIFITGA--SGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 58 ~~~gk~VLVTGA--TGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
++++|+++|||| ++.||++++++|++. +.+|++..|..+ ..++++++.. .......+.
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~--G~~v~~~~~~~~---~~~~~~~~~~---------------~~~~~~~~~ 62 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQ--GAELAFTYVVDK---LEERVRKMAA---------------ELDSELVFR 62 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHC--CCEEEEEcCcHH---HHHHHHHHHh---------------ccCCceEEE
Confidence 368899999997 679999999999998 677777766421 2233333311 012345789
Q ss_pred eecCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc--------c----ccHHHHHHHhHHHHHHHHHHHHHc--
Q psy7542 136 GDVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF--------D----DYMQTYVFLNTRGTRDMLNLSKQM-- 194 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f--------~----~~l~~~~~~NV~GT~~LLelA~~~-- 194 (762)
+|+++++ +++.++ ..+|++||+||.... + +.++..+++|+.|+..+.+.+..+
T Consensus 63 ~Dv~~~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~ 136 (261)
T PRK08690 63 CDVASDD------EINQVFADLGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMR 136 (261)
T ss_pred CCCCCHH------HHHHHHHHHHHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhh
Confidence 9999876 454443 358999999997531 1 234556789999988888766532
Q ss_pred CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH--
Q psy7542 195 IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME-- 272 (762)
Q Consensus 195 ~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~-- 272 (762)
.+-.++|++||..+.... |. -..|+.||+..+.+.+..+.
T Consensus 137 ~~~g~Iv~iss~~~~~~~----------~~----------------------------~~~Y~asKaal~~l~~~la~e~ 178 (261)
T PRK08690 137 GRNSAIVALSYLGAVRAI----------PN----------------------------YNVMGMAKASLEAGIRFTAACL 178 (261)
T ss_pred hcCcEEEEEcccccccCC----------CC----------------------------cccchhHHHHHHHHHHHHHHHh
Confidence 122578999987543211 10 15799999999888876654
Q ss_pred --cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCC
Q psy7542 273 --AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPG 350 (762)
Q Consensus 273 --~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~ 350 (762)
.|+.+..+.||.|-.+... ++ ............ .. ....+...+|+|+++..++......
T Consensus 179 ~~~gIrVn~i~PG~v~T~~~~---~~----~~~~~~~~~~~~-~~--------p~~r~~~peevA~~v~~l~s~~~~~-- 240 (261)
T PRK08690 179 GKEGIRCNGISAGPIKTLAAS---GI----ADFGKLLGHVAA-HN--------PLRRNVTIEEVGNTAAFLLSDLSSG-- 240 (261)
T ss_pred hhcCeEEEEEecCcccchhhh---cC----CchHHHHHHHhh-cC--------CCCCCCCHHHHHHHHHHHhCcccCC--
Confidence 3899999999987543211 11 001111111111 10 1123677899999999988754321
Q ss_pred CCceEEEecCC
Q psy7542 351 NTMRVINLTAN 361 (762)
Q Consensus 351 ~~~~iyNi~s~ 361 (762)
..+.++-+.++
T Consensus 241 ~tG~~i~vdgG 251 (261)
T PRK08690 241 ITGEITYVDGG 251 (261)
T ss_pred cceeEEEEcCC
Confidence 13566666554
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-10 Score=121.43 Aligned_cols=223 Identities=9% Similarity=0.040 Sum_probs=143.4
Q ss_pred hccCCCEEEEECCC--ChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEE
Q psy7542 57 ATLEHKNIFITGAS--GFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPI 134 (762)
Q Consensus 57 ~~~~gk~VLVTGAT--GFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V 134 (762)
..+++|+++||||+ +-||..++++|++. +.+|++..|.. ...++++++.+ + ......+
T Consensus 6 ~~~~~k~~lItGas~~~GIG~aia~~la~~--G~~V~l~~r~~---~~~~~~~~l~~---------~------~~~~~~~ 65 (272)
T PRK08159 6 GLMAGKRGLILGVANNRSIAWGIAKACRAA--GAELAFTYQGD---ALKKRVEPLAA---------E------LGAFVAG 65 (272)
T ss_pred ccccCCEEEEECCCCCCcHHHHHHHHHHHC--CCEEEEEcCch---HHHHHHHHHHH---------h------cCCceEE
Confidence 34688999999997 89999999999998 67787776642 12344444321 0 1235578
Q ss_pred EeecCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-----------cccHHHHHHHhHHHHHHHHHHHHHc-C
Q psy7542 135 NGDVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-----------DDYMQTYVFLNTRGTRDMLNLSKQM-I 195 (762)
Q Consensus 135 ~GDl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-----------~~~l~~~~~~NV~GT~~LLelA~~~-~ 195 (762)
.+|+++++ ++++++ ..+|++||+|+.... .+.++..+++|+.|+..+++.+... .
T Consensus 66 ~~Dl~~~~------~v~~~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~ 139 (272)
T PRK08159 66 HCDVTDEA------SIDAVFETLEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMT 139 (272)
T ss_pred ecCCCCHH------HHHHHHHHHHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 99999876 444432 358999999996531 1346778999999999999887653 2
Q ss_pred CccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH---
Q psy7542 196 HLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME--- 272 (762)
Q Consensus 196 ~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~--- 272 (762)
+-.++|++||..+... .|. ...|+.||+..+.+++..+.
T Consensus 140 ~~g~Iv~iss~~~~~~----------~p~----------------------------~~~Y~asKaal~~l~~~la~el~ 181 (272)
T PRK08159 140 DGGSILTLTYYGAEKV----------MPH----------------------------YNVMGVAKAALEASVKYLAVDLG 181 (272)
T ss_pred CCceEEEEeccccccC----------CCc----------------------------chhhhhHHHHHHHHHHHHHHHhc
Confidence 2358999998643211 011 14799999998888877665
Q ss_pred -cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCC
Q psy7542 273 -AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGN 351 (762)
Q Consensus 273 -~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~ 351 (762)
.|+.+..+.||.|-.......+ . .. .......... ....+...+|+|++++.++..... ..
T Consensus 182 ~~gIrVn~v~PG~v~T~~~~~~~----~---~~-~~~~~~~~~~--------p~~r~~~peevA~~~~~L~s~~~~--~i 243 (272)
T PRK08159 182 PKNIRVNAISAGPIKTLAASGIG----D---FR-YILKWNEYNA--------PLRRTVTIEEVGDSALYLLSDLSR--GV 243 (272)
T ss_pred ccCeEEEEeecCCcCCHHHhcCC----c---ch-HHHHHHHhCC--------cccccCCHHHHHHHHHHHhCcccc--Cc
Confidence 2799999999977543211100 0 00 0111111000 011256789999999988865432 12
Q ss_pred CceEEEecCC
Q psy7542 352 TMRVINLTAN 361 (762)
Q Consensus 352 ~~~iyNi~s~ 361 (762)
.+.++.+.++
T Consensus 244 tG~~i~vdgG 253 (272)
T PRK08159 244 TGEVHHVDSG 253 (272)
T ss_pred cceEEEECCC
Confidence 4667777766
|
|
| >cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-11 Score=113.30 Aligned_cols=86 Identities=24% Similarity=0.338 Sum_probs=71.8
Q ss_pred CCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhhhcccccc
Q psy7542 534 KPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQWLGLNNVL 613 (762)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (762)
..|++|.|.+.. ..|.|.||||||..||+ ++++.+..
T Consensus 16 ~~y~~Y~i~~~~--~~~~V~RRYsdF~~L~~-----------------------------~L~~~~p~------------ 52 (105)
T cd06866 16 LKHVEYEVSSKR--FKSTVYRRYSDFVWLHE-----------------------------YLLKRYPY------------ 52 (105)
T ss_pred cCCEEEEEEEec--CCEEEEEEhHHHHHHHH-----------------------------HHHHHCCC------------
Confidence 379999999864 67999999999999998 66665522
Q ss_pred cCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC-CCChhHHHHHHHHHHHHHHHHHhcCCCh--HHHHhhhCC
Q psy7542 614 WYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR-SNQPKVLDERRHLLEIYLKEMFKFGPSR--NQVLAFLGV 689 (762)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 689 (762)
...|.+|||++. +.+++++++||++||.||+.+++....+ ..+.+||..
T Consensus 53 ---------------------------~~iP~lP~K~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 104 (105)
T cd06866 53 ---------------------------RMVPALPPKRIGGSADREFLEARRRGLSRFLNLVARHPVLSEDELVRTFLTE 104 (105)
T ss_pred ---------------------------CcCCCCCCCccccCCCHHHHHHHHHHHHHHHHHHhcChhhccChHHHhhcCC
Confidence 268899999975 5799999999999999999998866544 889999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. |
| >cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-11 Score=115.64 Aligned_cols=99 Identities=21% Similarity=0.309 Sum_probs=76.6
Q ss_pred ccccceeee-cCCCCeEEEEEEEEEcC-----eEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHH
Q psy7542 522 ISVSGYRLI-ECEKPYYVYVIHVRMFQ-----QHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQK 595 (762)
Q Consensus 522 ~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (762)
|.|+..+.. +..++|++|.|+++... ..|.|.||||||..||. ++
T Consensus 4 i~v~dP~~~~~~~~~y~~Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~-----------------------------~L 54 (123)
T cd07293 4 IDVTNPQTVGVGRGRFTTYEIRLKTNLPIFKLKESTVRRRYSDFEWLRS-----------------------------EL 54 (123)
T ss_pred EEecCCeEecCCCcCEEEEEEEEEeCCCccccCceEEECCchHHHHHHH-----------------------------HH
Confidence 344443333 34589999999998544 68999999999999998 34
Q ss_pred hhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC----------CCChhHHHHHHHH
Q psy7542 596 KRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR----------SNQPKVLDERRHL 665 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 665 (762)
++..+. ..|.+|+|++. +++++++|+||++
T Consensus 55 ~~~~~~----------------------------------------~iPpLP~K~~~~~~~~~~~~~~~~~~fie~Rr~~ 94 (123)
T cd07293 55 ERESKV----------------------------------------VVPPLPGKALFRQLPFRGDDGIFDDSFIEERKQG 94 (123)
T ss_pred HhccCC----------------------------------------ccCCCCCCchhhhcccccccCCCCHHHHHHHHHH
Confidence 332222 68889999863 5789999999999
Q ss_pred HHHHHHHHHhcCCCh--HHHHhhhCC
Q psy7542 666 LEIYLKEMFKFGPSR--NQVLAFLGV 689 (762)
Q Consensus 666 ~~~~~~~~~~~~~~~--~~~~~~~~~ 689 (762)
||.||+.+...+.-+ ..+..||.-
T Consensus 95 Le~FL~~i~~hP~l~~~~~l~~FL~~ 120 (123)
T cd07293 95 LEQFLNKVAGHPLAQNERCLHMFLQD 120 (123)
T ss_pred HHHHHHHHHcCcccccCcHHHhhcCC
Confidence 999999998876666 788889853
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f |
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-10 Score=121.81 Aligned_cols=221 Identities=10% Similarity=0.064 Sum_probs=140.6
Q ss_pred cCCCEEEEECCCC--hhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGASG--FVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGATG--FLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
+++|++|||||++ .||+.++++|++. +.+|++..|... ..++++++.+ + . .....+.+
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~--Ga~V~~~~r~~~---~~~~~~~~~~---------~-----~-g~~~~~~~ 64 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQ--GAELAFTYQGEA---LGKRVKPLAE---------S-----L-GSDFVLPC 64 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhC--CCEEEEecCchH---HHHHHHHHHH---------h-----c-CCceEEeC
Confidence 5789999999997 9999999999998 677888777531 1233333211 0 0 12346889
Q ss_pred ecCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-----------cccHHHHHHHhHHHHHHHHHHHHH-cCCc
Q psy7542 137 DVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-----------DDYMQTYVFLNTRGTRDMLNLSKQ-MIHL 197 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-----------~~~l~~~~~~NV~GT~~LLelA~~-~~~l 197 (762)
|+++++ +++.++ ..+|++||+|+.... .+.++..+++|+.|+..+++.+.. +..-
T Consensus 65 Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~ 138 (271)
T PRK06505 65 DVEDIA------SVDAVFEALEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDG 138 (271)
T ss_pred CCCCHH------HHHHHHHHHHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccC
Confidence 999876 444333 358999999996531 144667889999999998887753 2222
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----c
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----A 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~ 273 (762)
.++|++||..+.... |. ...|+.||+..+.+.+..+. .
T Consensus 139 G~Iv~isS~~~~~~~----------~~----------------------------~~~Y~asKaAl~~l~r~la~el~~~ 180 (271)
T PRK06505 139 GSMLTLTYGGSTRVM----------PN----------------------------YNVMGVAKAALEASVRYLAADYGPQ 180 (271)
T ss_pred ceEEEEcCCCccccC----------Cc----------------------------cchhhhhHHHHHHHHHHHHHHHhhc
Confidence 589999997543211 10 14799999998888877665 3
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+.+..+.||.|-.+... ............ ....+ ..-+...+|+|++++.++..... ...+
T Consensus 181 gIrVn~v~PG~i~T~~~~-------~~~~~~~~~~~~-~~~~p--------~~r~~~peeva~~~~fL~s~~~~--~itG 242 (271)
T PRK06505 181 GIRVNAISAGPVRTLAGA-------GIGDARAIFSYQ-QRNSP--------LRRTVTIDEVGGSALYLLSDLSS--GVTG 242 (271)
T ss_pred CeEEEEEecCCccccccc-------cCcchHHHHHHH-hhcCC--------ccccCCHHHHHHHHHHHhCcccc--ccCc
Confidence 899999999987554211 000000111111 11110 11245679999999988764332 1136
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
.+..+.++
T Consensus 243 ~~i~vdgG 250 (271)
T PRK06505 243 EIHFVDSG 250 (271)
T ss_pred eEEeecCC
Confidence 67777665
|
|
| >cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-11 Score=110.64 Aligned_cols=99 Identities=20% Similarity=0.317 Sum_probs=78.5
Q ss_pred ccccceeeecCCCCeEEEEEEEEEcCeE--EEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhc
Q psy7542 522 ISVSGYRLIECEKPYYVYVIHVRMFQQH--YIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNC 599 (762)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (762)
++|.|++.......||||+|+|...++. ..|.|||+||..||+ ++|+.+
T Consensus 2 ~~V~~f~Kr~~p~k~yvY~i~V~~~~~~~~~~I~Rry~eF~~Lh~-----------------------------kL~~~F 52 (109)
T cd07289 2 VSVFTYHKRYNPDKHYIYVVRILREGQIEPSFVFRTFDEFQELHN-----------------------------KLSILF 52 (109)
T ss_pred cEEeeEEEEEcCCCeEEEEEEEEECCCceeEEEEeeHHHHHHHHH-----------------------------HHHHHC
Confidence 4566665443444568999999987662 669999999999999 777766
Q ss_pred hhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC--CCChhHHHHHHHHHHHHHHHHHhcC
Q psy7542 600 KYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR--SNQPKVLDERRHLLEIYLKEMFKFG 677 (762)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (762)
.. -..|.||+|.+. ++.++++|+|+.+||.|+++++...
T Consensus 53 p~---------------------------------------~~lP~lP~k~~~grs~~~~vae~R~~~L~~Yl~~Ll~~p 93 (109)
T cd07289 53 PL---------------------------------------WKLPGFPNKMVLGRTHIKDVAAKRKVELNSYIQSLMNSS 93 (109)
T ss_pred Cc---------------------------------------ccCCCCCCCeeeCCCcchHHHHHHHHHHHHHHHHHHcCC
Confidence 32 148999999875 4567999999999999999999988
Q ss_pred CCh---HHHHhhhC
Q psy7542 678 PSR---NQVLAFLG 688 (762)
Q Consensus 678 ~~~---~~~~~~~~ 688 (762)
+.. ..|+.|+.
T Consensus 94 ~~Is~~d~v~~FF~ 107 (109)
T cd07289 94 TEVAECDLVYTFFH 107 (109)
T ss_pred hhhhcChHHHHhcc
Confidence 766 78888863
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom |
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=9.1e-11 Score=125.08 Aligned_cols=246 Identities=15% Similarity=0.064 Sum_probs=142.6
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|+++|||| |+||++++++|. . +.+|+++.|... +++++.+ .++ ....++.++.+|+++
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~--G~~Vv~~~r~~~------~~~~~~~-----~l~------~~~~~~~~~~~Dv~d 60 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-A--GKKVLLADYNEE------NLEAAAK-----TLR------EAGFDVSTQEVDVSS 60 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-C--CCEEEEEeCCHH------HHHHHHH-----HHH------hcCCeEEEEEeecCC
Confidence 478999998 799999999995 5 678899998632 1222110 111 112468889999998
Q ss_pred CCCCCCHHHHHhhc------CCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEEeCCcccCCCc
Q psy7542 141 PDLGISAEDRQMLS------ETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYVSTAYCHPKEK 213 (762)
Q Consensus 141 ~~LGLs~~~l~~l~------~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~vSSay~~~~~~ 213 (762)
++ ++..++ ..+|+|||+||.......+...+++|+.|+.++++++... ..-.+.|++||..+.....
T Consensus 61 ~~------~i~~~~~~~~~~g~id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~ 134 (275)
T PRK06940 61 RE------SVKALAATAQTLGPVTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPA 134 (275)
T ss_pred HH------HHHHHHHHHHhcCCCCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcc
Confidence 75 444333 3589999999976556678889999999999999988653 1113567778765432110
Q ss_pred ccccccCCCCCChhhHHHHHHhhhHHHHHHHH---HhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEeeeeec
Q psy7542 214 VLEEKTYPPPVSPHNVIEKAELLSKNELELLK---QELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILRPSIII 286 (762)
Q Consensus 214 ~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~t---p~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvRPs~V~ 286 (762)
...+.....+ ..+...+.... +.........|+.||+..+.+.+..+. .|+.+..+.||.|-
T Consensus 135 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~ 203 (275)
T PRK06940 135 LTAEQERALA-----------TTPTEELLSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIIS 203 (275)
T ss_pred cchhhhcccc-----------ccccccccccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCc
Confidence 0000000000 00000000000 000001125799999998888876654 38999999999886
Q ss_pred cCCCCCCCCCCCCCCCch-HHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 287 PIWKDPLPGWTDNINGPT-GLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 287 G~~~eP~pGWidn~~gp~-~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
.+.... ...... ........ . . ...-+...+|+|+++..++...... ..+.++.+.++
T Consensus 204 T~~~~~------~~~~~~~~~~~~~~~-~---~-----p~~r~~~peeia~~~~fL~s~~~~~--itG~~i~vdgg 262 (275)
T PRK06940 204 TPLAQD------ELNGPRGDGYRNMFA-K---S-----PAGRPGTPDEIAALAEFLMGPRGSF--ITGSDFLVDGG 262 (275)
T ss_pred Cccchh------hhcCCchHHHHHHhh-h---C-----CcccCCCHHHHHHHHHHHcCcccCc--ccCceEEEcCC
Confidence 553210 000000 11111111 0 0 1123677899999999887543321 13567776655
|
|
| >cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15 | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-11 Score=113.43 Aligned_cols=102 Identities=25% Similarity=0.345 Sum_probs=76.1
Q ss_pred ccccceeeecCCCCeEEEEEEEEEc-------CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHH
Q psy7542 522 ISVSGYRLIECEKPYYVYVIHVRMF-------QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQ 594 (762)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (762)
+.|+..+.. +++|++|.|.++.. ...|.|.||||||..||. .|.++.+.
T Consensus 5 ~~V~dp~~~--~~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~----------------------~L~~~~~~ 60 (118)
T cd07288 5 YSVTDPRTH--PKGYTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHG----------------------ELAYTHRN 60 (118)
T ss_pred EEecCCcCc--CCCcEEEEEEEEecCCCCCccceEEEEECCchHHHHHHH----------------------HHHHhccc
Confidence 345555444 45799999998864 468999999999999998 45432111
Q ss_pred HhhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-CCCChhHHHHHHHHHHHHHHHH
Q psy7542 595 KKRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-RSNQPKVLDERRHLLEIYLKEM 673 (762)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 673 (762)
.+ +.....|.+|+|++ .+.+++++||||++||.||+.+
T Consensus 61 ---~~--------------------------------------~~~~~~Pp~P~K~~~g~f~~~fIeeRR~~Le~fL~~i 99 (118)
T cd07288 61 ---LF--------------------------------------RRQEEFPPFPRAQVFGRFEAAVIEERRNAAEAMLLFT 99 (118)
T ss_pred ---cc--------------------------------------ccCCccCCCCCceeeccCCHHHHHHHHHHHHHHHHHH
Confidence 11 11125888999886 5789999999999999999999
Q ss_pred HhcCCCh--HHHHhhhC
Q psy7542 674 FKFGPSR--NQVLAFLG 688 (762)
Q Consensus 674 ~~~~~~~--~~~~~~~~ 688 (762)
......+ ..|.+||.
T Consensus 100 ~~~p~l~~s~~~~~FL~ 116 (118)
T cd07288 100 VNIPALYNSPQLKEFFR 116 (118)
T ss_pred hCChhhcCChHHHHHHh
Confidence 8776555 88999985
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t |
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.2e-10 Score=119.01 Aligned_cols=221 Identities=13% Similarity=0.063 Sum_probs=141.1
Q ss_pred cCCCEEEEECC--CChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGA--SGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGA--TGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
+++|+|+|||| ++-||.+++++|++. +.+|++..|... ..++++++.+ + . .....+.+
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~--G~~v~~~~~~~~---~~~~~~~~~~---------~-----~-~~~~~~~~ 63 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKRE--GAELAFTYVGDR---FKDRITEFAA---------E-----F-GSDLVFPC 63 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHC--CCeEEEEccchH---HHHHHHHHHH---------h-----c-CCcceeec
Confidence 57899999996 679999999999998 677777766422 1234433321 0 0 12346889
Q ss_pred ecCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc------------cccHHHHHHHhHHHHHHHHHHHHHc-CC
Q psy7542 137 DVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF------------DDYMQTYVFLNTRGTRDMLNLSKQM-IH 196 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f------------~~~l~~~~~~NV~GT~~LLelA~~~-~~ 196 (762)
|+++++ +++.++ ..+|++||+|+.... .+.++..+++|+.|+..+.+++... .+
T Consensus 64 Dv~d~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~ 137 (260)
T PRK06997 64 DVASDE------QIDALFASLGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSD 137 (260)
T ss_pred cCCCHH------HHHHHHHHHHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 999876 454443 458999999986421 1345668899999999998887642 22
Q ss_pred ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----
Q psy7542 197 LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME---- 272 (762)
Q Consensus 197 lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~---- 272 (762)
-.++|++||..+.... |. ...|+.||+..+.+.+..+.
T Consensus 138 ~g~Ii~iss~~~~~~~----------~~----------------------------~~~Y~asKaal~~l~~~la~el~~ 179 (260)
T PRK06997 138 DASLLTLSYLGAERVV----------PN----------------------------YNTMGLAKASLEASVRYLAVSLGP 179 (260)
T ss_pred CceEEEEeccccccCC----------CC----------------------------cchHHHHHHHHHHHHHHHHHHhcc
Confidence 3589999987542211 10 15799999999888887765
Q ss_pred cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCC
Q psy7542 273 AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNT 352 (762)
Q Consensus 273 ~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~ 352 (762)
.|+.++.+.||.|-.+... .+ ............ .. ....+...+|+++++..++...... ..
T Consensus 180 ~gIrVn~i~PG~v~T~~~~---~~----~~~~~~~~~~~~-~~--------p~~r~~~pedva~~~~~l~s~~~~~--it 241 (260)
T PRK06997 180 KGIRANGISAGPIKTLAAS---GI----KDFGKILDFVES-NA--------PLRRNVTIEEVGNVAAFLLSDLASG--VT 241 (260)
T ss_pred cCeEEEEEeeCccccchhc---cc----cchhhHHHHHHh-cC--------cccccCCHHHHHHHHHHHhCccccC--cc
Confidence 2799999999977543211 00 000111111111 10 1123577899999999988754321 14
Q ss_pred ceEEEecCC
Q psy7542 353 MRVINLTAN 361 (762)
Q Consensus 353 ~~iyNi~s~ 361 (762)
+.++.+.++
T Consensus 242 G~~i~vdgg 250 (260)
T PRK06997 242 GEITHVDSG 250 (260)
T ss_pred eeEEEEcCC
Confidence 667776654
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-10 Score=121.41 Aligned_cols=223 Identities=12% Similarity=0.040 Sum_probs=142.2
Q ss_pred cCCCEEEEECCC--ChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGAS--GFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGAT--GFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
++||+++||||+ +-||.+++++|++. +.+|++..|..+. .++++++.+ +. ...++..+.+
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~--G~~v~~~~r~~~~---~~~~~~~~~---------~~----~~~~~~~~~~ 66 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNA--GAKLVFTYAGERL---EKEVRELAD---------TL----EGQESLLLPC 66 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHC--CCEEEEecCcccc---hHHHHHHHH---------Hc----CCCceEEEec
Confidence 478999999997 89999999999998 6778888775322 233433321 00 1246888999
Q ss_pred ecCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc--------c---ccHHHHHHHhHHHHHHHHHHHHHc-CCc
Q psy7542 137 DVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF--------D---DYMQTYVFLNTRGTRDMLNLSKQM-IHL 197 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f--------~---~~l~~~~~~NV~GT~~LLelA~~~-~~l 197 (762)
|+++++ +++.++ ..+|++||+|+.... + +.+...+++|+.++..+.+.+... ..-
T Consensus 67 Dv~d~~------~v~~~~~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~ 140 (257)
T PRK08594 67 DVTSDE------EITACFETIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEG 140 (257)
T ss_pred CCCCHH------HHHHHHHHHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccC
Confidence 999876 333332 458999999986431 1 234557889999998888777642 222
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----c
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----A 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~ 273 (762)
.++|++||..+.... |. ...|+.||+..+.+.+..+. .
T Consensus 141 g~Iv~isS~~~~~~~----------~~----------------------------~~~Y~asKaal~~l~~~la~el~~~ 182 (257)
T PRK08594 141 GSIVTLTYLGGERVV----------QN----------------------------YNVMGVAKASLEASVKYLANDLGKD 182 (257)
T ss_pred ceEEEEcccCCccCC----------CC----------------------------CchhHHHHHHHHHHHHHHHHHhhhc
Confidence 589999998653211 10 14799999999998887765 2
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+.+..+.||.|-.+.....+ ........... . .....+...+|+|++++.++...... ..+
T Consensus 183 gIrvn~v~PG~v~T~~~~~~~-------~~~~~~~~~~~-~--------~p~~r~~~p~~va~~~~~l~s~~~~~--~tG 244 (257)
T PRK08594 183 GIRVNAISAGPIRTLSAKGVG-------GFNSILKEIEE-R--------APLRRTTTQEEVGDTAAFLFSDLSRG--VTG 244 (257)
T ss_pred CCEEeeeecCcccCHhHhhhc-------cccHHHHHHhh-c--------CCccccCCHHHHHHHHHHHcCccccc--ccc
Confidence 899999999987554211000 00011111100 0 01123567899999998887654321 135
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
.+..+.++
T Consensus 245 ~~~~~dgg 252 (257)
T PRK08594 245 ENIHVDSG 252 (257)
T ss_pred eEEEECCc
Confidence 66666544
|
|
| >cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-11 Score=113.13 Aligned_cols=98 Identities=21% Similarity=0.279 Sum_probs=74.3
Q ss_pred cccceeee-cCCCCeEEEEEEEEEc-----CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHh
Q psy7542 523 SVSGYRLI-ECEKPYYVYVIHVRMF-----QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKK 596 (762)
Q Consensus 523 ~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (762)
.|+..+.. +..++|++|.|+|... +..|.|.||||||..||. +++
T Consensus 4 ~V~~p~~~~~~~~~y~~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~-----------------------------~L~ 54 (114)
T cd06859 4 SVTDPVKVGDGMSAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYE-----------------------------RLV 54 (114)
T ss_pred EEeCcceecCCccCEEEEEEEeecCCCCCCCCceEEEEChHHHHHHHH-----------------------------HHH
Confidence 34443333 3357999999999874 468999999999999998 555
Q ss_pred hhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCC-CC--hhHHHHHHHHHHHHHHHH
Q psy7542 597 RNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRS-NQ--PKVLDERRHLLEIYLKEM 673 (762)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~ 673 (762)
+.+.. ...|.+|+|++.. .. ++++|+||++||.||+.+
T Consensus 55 ~~~~~---------------------------------------~~~P~lP~k~~~~~~~~~~~~ie~Rr~~L~~fL~~i 95 (114)
T cd06859 55 EKYPG---------------------------------------RIVPPPPEKQAVGRFKVKFEFIEKRRAALERFLRRI 95 (114)
T ss_pred HHCCC---------------------------------------CEeCCCCCCcccCccCccHHHHHHHHHHHHHHHHHH
Confidence 54421 1578999998643 33 449999999999999999
Q ss_pred HhcCCCh--HHHHhhhC
Q psy7542 674 FKFGPSR--NQVLAFLG 688 (762)
Q Consensus 674 ~~~~~~~--~~~~~~~~ 688 (762)
+....-+ ..|..||.
T Consensus 96 ~~~p~l~~s~~~~~Fl~ 112 (114)
T cd06859 96 AAHPVLRKDPDFRLFLE 112 (114)
T ss_pred hcChhhccCcHHHhhcC
Confidence 8776555 88888885
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex, |
| >cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-11 Score=112.67 Aligned_cols=84 Identities=25% Similarity=0.329 Sum_probs=70.2
Q ss_pred CCCCeEEEEEEEEEcCe---EEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhhhc
Q psy7542 532 CEKPYYVYVIHVRMFQQ---HYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQWLG 608 (762)
Q Consensus 532 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (762)
..+.|++|.|+|...+. .|.|.||||||..||+ ++++..+.
T Consensus 29 ~~~~~~~Y~I~V~~~~~~~~~~~V~RRYsdF~~L~~-----------------------------~L~~~fp~------- 72 (119)
T cd06869 29 RSKHHYEFIIRVRREGEEYRTIYVARRYSDFKKLHH-----------------------------DLKKEFPG------- 72 (119)
T ss_pred CCCceEEEEEEEEECCCCCCceEEEeeHHHHHHHHH-----------------------------HHHHHCcC-------
Confidence 46789999999999987 9999999999999999 55554421
Q ss_pred ccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHHhcCCCh--HHHHhh
Q psy7542 609 LNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGPSR--NQVLAF 686 (762)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 686 (762)
...|.||+|+. .+.|+||..||.||+.+++....+ ..+..|
T Consensus 73 --------------------------------~~lP~lP~K~~-----~~~E~Rr~~Le~yL~~Ll~~p~l~~s~~~~~F 115 (119)
T cd06869 73 --------------------------------KKLPKLPHKDK-----LPREKLRLSLRQYLRSLLKDPEVAHSSILQEF 115 (119)
T ss_pred --------------------------------CCCCCCcCCch-----hHHHHHHHHHHHHHHHHhcChhhhcChHHHHh
Confidence 26788999986 678999999999999999865554 889999
Q ss_pred hC
Q psy7542 687 LG 688 (762)
Q Consensus 687 ~~ 688 (762)
|.
T Consensus 116 L~ 117 (119)
T cd06869 116 LT 117 (119)
T ss_pred hC
Confidence 85
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. |
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=119.96 Aligned_cols=196 Identities=11% Similarity=0.017 Sum_probs=132.5
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+++||||+|.||+++++.|++. +.+|+++.|.. ++++++.+ ..++..+.+|++++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~--g~~v~~~~r~~------~~~~~~~~----------------~~~~~~~~~D~~~~ 56 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRND--GHKVTLVGARR------DDLEVAAK----------------ELDVDAIVCDNTDP 56 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH----------------hccCcEEecCCCCH
Confidence 46999999999999999999998 67888888853 23332211 01356788999987
Q ss_pred CCCCCHHHHHhhc----CCccEEEEcccccC---------c---cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEEe
Q psy7542 142 DLGISAEDRQMLS----ETIHIVYHIAATVR---------F---DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYVS 204 (762)
Q Consensus 142 ~LGLs~~~l~~l~----~~vDiViH~AA~v~---------f---~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~vS 204 (762)
+ +++.++ +.+|++||+|+... + .+.++..+++|+.|+..+++++... ..-.++|++|
T Consensus 57 ~------~v~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~is 130 (223)
T PRK05884 57 A------SLEEARGLFPHHLDTIVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVV 130 (223)
T ss_pred H------HHHHHHHHHhhcCcEEEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 5 454443 36899999997421 1 2456778999999999999988652 2225899999
Q ss_pred CCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEE
Q psy7542 205 TAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMIL 280 (762)
Q Consensus 205 Say~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~Iv 280 (762)
|... +. ...|+.||+..+.+++..+. .|+.+..+
T Consensus 131 S~~~--------------~~----------------------------~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v 168 (223)
T PRK05884 131 PENP--------------PA----------------------------GSAEAAIKAALSNWTAGQAAVFGTRGITINAV 168 (223)
T ss_pred cCCC--------------CC----------------------------ccccHHHHHHHHHHHHHHHHHhhhcCeEEEEE
Confidence 8631 00 05799999999988877766 27999999
Q ss_pred eeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 281 RPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 281 RPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
.||.|..+. ..... . . ..-..+|+++++..++...... ..++++.+.+
T Consensus 169 ~PG~v~t~~-----------------~~~~~--~------~-----p~~~~~~ia~~~~~l~s~~~~~--v~G~~i~vdg 216 (223)
T PRK05884 169 ACGRSVQPG-----------------YDGLS--R------T-----PPPVAAEIARLALFLTTPAARH--ITGQTLHVSH 216 (223)
T ss_pred ecCccCchh-----------------hhhcc--C------C-----CCCCHHHHHHHHHHHcCchhhc--cCCcEEEeCC
Confidence 998764321 00000 0 0 0126789999998887643321 1456776665
Q ss_pred C
Q psy7542 361 N 361 (762)
Q Consensus 361 ~ 361 (762)
+
T Consensus 217 g 217 (223)
T PRK05884 217 G 217 (223)
T ss_pred C
Confidence 5
|
|
| >cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30 | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.3e-11 Score=111.48 Aligned_cols=89 Identities=18% Similarity=0.335 Sum_probs=73.3
Q ss_pred CCCCeEEEEEEEEE-----cCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhh
Q psy7542 532 CEKPYYVYVIHVRM-----FQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQW 606 (762)
Q Consensus 532 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
..++|++|.|++.. ...+|.|.||||||..||+ ++...+..
T Consensus 14 ~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~-----------------------------~L~~~~p~----- 59 (116)
T cd06860 14 TLETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQ-----------------------------KLEESHPT----- 59 (116)
T ss_pred CCcCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHH-----------------------------HHHHHCCC-----
Confidence 34789999999875 4679999999999999998 55554421
Q ss_pred hcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-----CCCChhHHHHHHHHHHHHHHHHHhcCCCh-
Q psy7542 607 LGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-----RSNQPKVLDERRHLLEIYLKEMFKFGPSR- 680 (762)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 680 (762)
...|.+|+|+. ...+++++++||++||.||+.+.....-+
T Consensus 60 ----------------------------------~~iPpLP~K~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~hp~l~~ 105 (116)
T cd06860 60 ----------------------------------HIIPPLPEKHSVKGLLDRFSPEFVATRMRALHKFLNRIVEHPVLSF 105 (116)
T ss_pred ----------------------------------CccCCCCCcchhhhhcccCCHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 25899999986 35789999999999999999998877766
Q ss_pred -HHHHhhhC
Q psy7542 681 -NQVLAFLG 688 (762)
Q Consensus 681 -~~~~~~~~ 688 (762)
..+..||.
T Consensus 106 s~~l~~FLt 114 (116)
T cd06860 106 NEHLKVFLT 114 (116)
T ss_pred CcHHHHhhc
Confidence 78888884
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal |
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-09 Score=116.05 Aligned_cols=221 Identities=11% Similarity=0.068 Sum_probs=139.6
Q ss_pred cCCCEEEEECCCC--hhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGASG--FVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGATG--FLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
++||+++||||++ .||.++++.|++. +.+|++..|.. ..++.++++.+ + . .....+.+
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~--G~~v~~~~r~~---~~~~~~~~l~~---------~-----~-g~~~~~~~ 65 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKH--GAELWFTYQSE---VLEKRVKPLAE---------E-----I-GCNFVSEL 65 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHc--CCEEEEEeCch---HHHHHHHHHHH---------h-----c-CCceEEEc
Confidence 5789999999997 7999999999988 67777777642 12233333311 1 0 12245789
Q ss_pred ecCCCCCCCCHHHHHhhc-------CCccEEEEcccccC-------c----cccHHHHHHHhHHHHHHHHHHHHH-cCCc
Q psy7542 137 DVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVR-------F----DDYMQTYVFLNTRGTRDMLNLSKQ-MIHL 197 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~-------f----~~~l~~~~~~NV~GT~~LLelA~~-~~~l 197 (762)
|+++++ ++++++ ..+|++||+|+... + .+.+...+++|+.|...+++.+.. +..-
T Consensus 66 Dv~~~~------~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~ 139 (260)
T PRK06603 66 DVTNPK------SISNLFDDIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDG 139 (260)
T ss_pred cCCCHH------HHHHHHHHHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 999876 444333 45899999998642 1 134667899999999998887653 2222
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----c
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----A 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~ 273 (762)
.++|++||..+.... |. ...|+.||+..+.+.+..+. .
T Consensus 140 G~Iv~isS~~~~~~~----------~~----------------------------~~~Y~asKaal~~l~~~la~el~~~ 181 (260)
T PRK06603 140 GSIVTLTYYGAEKVI----------PN----------------------------YNVMGVAKAALEASVKYLANDMGEN 181 (260)
T ss_pred ceEEEEecCccccCC----------Cc----------------------------ccchhhHHHHHHHHHHHHHHHhhhc
Confidence 589999986542110 10 15799999999888877765 2
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+.+..+.||.|-.+..... ............ .. ....+...+|+|++++.++...... ..+
T Consensus 182 gIrVn~v~PG~v~T~~~~~~-------~~~~~~~~~~~~-~~--------p~~r~~~pedva~~~~~L~s~~~~~--itG 243 (260)
T PRK06603 182 NIRVNAISAGPIKTLASSAI-------GDFSTMLKSHAA-TA--------PLKRNTTQEDVGGAAVYLFSELSKG--VTG 243 (260)
T ss_pred CeEEEEEecCcCcchhhhcC-------CCcHHHHHHHHh-cC--------CcCCCCCHHHHHHHHHHHhCccccc--Ccc
Confidence 89999999998754421100 001111111111 10 1123566799999999988653321 135
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
.++.+.++
T Consensus 244 ~~i~vdgG 251 (260)
T PRK06603 244 EIHYVDCG 251 (260)
T ss_pred eEEEeCCc
Confidence 66666554
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.6e-10 Score=121.79 Aligned_cols=221 Identities=13% Similarity=0.081 Sum_probs=140.4
Q ss_pred cCCCEEEEECCC--ChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGAS--GFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGAT--GFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
+++|+|+||||+ +.||..+++.|++. +.+|++..|... ..++++++.+ + ...+ ..+.+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~--G~~Vil~~r~~~---~~~~~~~~~~---------~-----~~~~-~~~~~ 62 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQ--GAELAFTYLNEA---LKKRVEPIAQ---------E-----LGSD-YVYEL 62 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHC--CCEEEEEecCHH---HHHHHHHHHH---------h-----cCCc-eEEEe
Confidence 478999999997 79999999999998 678888887531 2234433321 1 1123 57889
Q ss_pred ecCCCCCCCCHHHHHhhc-------CCccEEEEcccccC-------c----cccHHHHHHHhHHHHHHHHHHHHH-cCCc
Q psy7542 137 DVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVR-------F----DDYMQTYVFLNTRGTRDMLNLSKQ-MIHL 197 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~-------f----~~~l~~~~~~NV~GT~~LLelA~~-~~~l 197 (762)
|+++++ +++.++ ..+|++||+|+... + .+.++..+++|+.|+..+.+.+.. +..-
T Consensus 63 Dv~d~~------~v~~~~~~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~ 136 (274)
T PRK08415 63 DVSKPE------HFKSLAESLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDG 136 (274)
T ss_pred cCCCHH------HHHHHHHHHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccC
Confidence 999876 343332 45899999999642 1 134667899999999999887764 2222
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----c
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----A 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~ 273 (762)
.++|++||..+.... |. ...|+.||+..+.+.+..+. .
T Consensus 137 g~Iv~isS~~~~~~~----------~~----------------------------~~~Y~asKaal~~l~~~la~el~~~ 178 (274)
T PRK08415 137 ASVLTLSYLGGVKYV----------PH----------------------------YNVMGVAKAALESSVRYLAVDLGKK 178 (274)
T ss_pred CcEEEEecCCCccCC----------Cc----------------------------chhhhhHHHHHHHHHHHHHHHhhhc
Confidence 589999997543211 10 14799999998888877765 2
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+.+..+.||.|-.+..... .............. + ..-+...+|+|++++.++...... ..+
T Consensus 179 gIrVn~v~PG~v~T~~~~~~--------~~~~~~~~~~~~~~---p-----l~r~~~pedva~~v~fL~s~~~~~--itG 240 (274)
T PRK08415 179 GIRVNAISAGPIKTLAASGI--------GDFRMILKWNEINA---P-----LKKNVSIEEVGNSGMYLLSDLSSG--VTG 240 (274)
T ss_pred CeEEEEEecCccccHHHhcc--------chhhHHhhhhhhhC---c-----hhccCCHHHHHHHHHHHhhhhhhc--ccc
Confidence 89999999987754321100 00000000000000 0 112466799999998887653221 135
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
.++.+.++
T Consensus 241 ~~i~vdGG 248 (274)
T PRK08415 241 EIHYVDAG 248 (274)
T ss_pred cEEEEcCc
Confidence 66666655
|
|
| >cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.5e-11 Score=107.69 Aligned_cols=96 Identities=19% Similarity=0.281 Sum_probs=77.2
Q ss_pred cceeeecCCCCeEEEEEEEEEcCeE--EEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhh
Q psy7542 525 SGYRLIECEKPYYVYVIHVRMFQQH--YIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYF 602 (762)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (762)
.|.+-......||+|+|+|...++. |.|.|||+||..||+ ++|+.+..
T Consensus 5 ~~~~kr~~p~k~y~Y~I~V~~~~~~~~~~I~RrY~eF~~Lh~-----------------------------kLk~~FP~- 54 (109)
T cd07290 5 CRHESTFNPSKGYAYVVKVQREGHKEATFVQRTFEEFQELHN-----------------------------KLRLLFPS- 54 (109)
T ss_pred eeeeEEecCCCcEEEEEEEEECCCceeEEEEeeHHHHHHHHH-----------------------------HHHHHCcc-
Confidence 3444444455677899999988653 899999999999999 77776622
Q ss_pred hHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCC--hhHHHHHHHHHHHHHHHHHhcCCCh
Q psy7542 603 IYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQ--PKVLDERRHLLEIYLKEMFKFGPSR 680 (762)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (762)
-..|+||+|.+.+.. ++++|+|+.+||.|++.++...+..
T Consensus 55 --------------------------------------~~lP~LP~k~~~g~s~~~~vae~R~~~L~~Yl~~Ll~~~~~I 96 (109)
T cd07290 55 --------------------------------------SKLPSFPSRFVIGRSRGEAVAERRKEELNGYIWHLIHAPPEV 96 (109)
T ss_pred --------------------------------------ccCCCCCCCcccCccccHHHHHHHHHHHHHHHHHHHcCChhe
Confidence 157999999876654 7999999999999999999988766
Q ss_pred ---HHHHhhhC
Q psy7542 681 ---NQVLAFLG 688 (762)
Q Consensus 681 ---~~~~~~~~ 688 (762)
..|..|+.
T Consensus 97 s~s~~v~~FF~ 107 (109)
T cd07290 97 AECDLVYTFFH 107 (109)
T ss_pred ecCHHHHHhcc
Confidence 88888873
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai |
| >cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12 | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.6e-11 Score=112.74 Aligned_cols=101 Identities=19% Similarity=0.328 Sum_probs=78.8
Q ss_pred cccccceeeecC-CCCeEEEEEEEEEc-----CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHH
Q psy7542 521 CISVSGYRLIEC-EKPYYVYVIHVRMF-----QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQ 594 (762)
Q Consensus 521 ~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (762)
.|.|+..+...+ .++|++|.|+++.. ...+.|.||||||..||+ +
T Consensus 5 ~i~v~dP~~~~~g~~~yt~Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~-----------------------------~ 55 (132)
T cd07294 5 EIDIFNPQTVGVGRNRFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKN-----------------------------E 55 (132)
T ss_pred EEEeeCCeEecCCCCCEEEEEEEEEeCCCCcccceeEEeCCccHHHHHHH-----------------------------H
Confidence 355555544433 58999999998743 468999999999999998 4
Q ss_pred HhhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC----------CCChhHHHHHHH
Q psy7542 595 KKRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR----------SNQPKVLDERRH 664 (762)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 664 (762)
+++..+. ..|++|+|++. +..++++|+||+
T Consensus 56 L~~~~g~----------------------------------------~iPpLP~K~~~~~~~~~~~~~~~~~~fie~Rr~ 95 (132)
T cd07294 56 LERDSKI----------------------------------------VVPPLPGKALKRQLPFRGDEGIFEESFIEERRQ 95 (132)
T ss_pred HHHcCCC----------------------------------------ccCCCCCCceeccccccccccCCCHHHHHHHHH
Confidence 4332222 68889999862 568999999999
Q ss_pred HHHHHHHHHHhcCCCh--HHHHhhhCCC
Q psy7542 665 LLEIYLKEMFKFGPSR--NQVLAFLGVN 690 (762)
Q Consensus 665 ~~~~~~~~~~~~~~~~--~~~~~~~~~~ 690 (762)
+||.||+.+.....-+ ..|..||.-.
T Consensus 96 ~Le~FL~~i~~hp~l~~~~~l~~FL~~~ 123 (132)
T cd07294 96 GLEQFINKIAGHPLAQNERCLHMFLQDE 123 (132)
T ss_pred HHHHHHHHHHcCcccccChHHHHhcCCC
Confidence 9999999998876555 7899999766
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated. |
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-10 Score=119.58 Aligned_cols=163 Identities=17% Similarity=0.180 Sum_probs=110.3
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|+||||+|.||+.++++|++. +.+|+++.|... ++++..+ .++ ...++.++.+|++++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~--G~~V~~~~r~~~------~~~~~~~-----~l~-------~~~~~~~~~~Dv~d~ 60 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKK--GARVVISSRNEE------NLEKALK-----ELK-------EYGEVYAVKADLSDK 60 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHc--CCEEEEEeCCHH------HHHHHHH-----HHH-------hcCCceEEEcCCCCH
Confidence 57999999999999999999998 678898888642 2222111 110 013678899999986
Q ss_pred CCCCCHHHHHhhc-------CCccEEEEcccccC-----cc----ccHHHHHHHhHHHHHHHHHHHH----HcCCccEEE
Q psy7542 142 DLGISAEDRQMLS-------ETIHIVYHIAATVR-----FD----DYMQTYVFLNTRGTRDMLNLSK----QMIHLQLFV 201 (762)
Q Consensus 142 ~LGLs~~~l~~l~-------~~vDiViH~AA~v~-----f~----~~l~~~~~~NV~GT~~LLelA~----~~~~lk~fV 201 (762)
+ ++++++ ..+|+|||+||... +. +.+...+.+|+.++..+...+. +..+-.++|
T Consensus 61 ~------~~~~~~~~~~~~~g~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv 134 (259)
T PRK08340 61 D------DLKNLVKEAWELLGGIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLV 134 (259)
T ss_pred H------HHHHHHHHHHHhcCCCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEE
Confidence 5 444433 46899999999642 11 2344467788888665554432 112346899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+.... |. ...|+.||+..+.+.+..+.. |+.+
T Consensus 135 ~isS~~~~~~~----------~~----------------------------~~~y~~sKaa~~~~~~~la~e~~~~gI~v 176 (259)
T PRK08340 135 YLSSVSVKEPM----------PP----------------------------LVLADVTRAGLVQLAKGVSRTYGGKGIRA 176 (259)
T ss_pred EEeCcccCCCC----------CC----------------------------chHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 99998653211 00 147999999999998887763 7888
Q ss_pred EEEeeeeeccC
Q psy7542 278 MILRPSIIIPI 288 (762)
Q Consensus 278 ~IvRPs~V~G~ 288 (762)
..+.||.|-.+
T Consensus 177 ~~v~pG~v~t~ 187 (259)
T PRK08340 177 YTVLLGSFDTP 187 (259)
T ss_pred EEeccCcccCc
Confidence 88888876443
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.8e-10 Score=119.64 Aligned_cols=221 Identities=13% Similarity=0.093 Sum_probs=140.5
Q ss_pred cCCCEEEEECCCC--hhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGASG--FVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGATG--FLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
++||+++||||++ .||+.+++.|++. +.+|++..|.. ..++.++++.. ...++.++.+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~--G~~vil~~r~~---~~~~~~~~~~~---------------~~~~~~~~~~ 63 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQND---KLKGRVEEFAA---------------QLGSDIVLPC 63 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHC--CCEEEEEecch---hHHHHHHHHHh---------------ccCCceEeec
Confidence 5789999999985 8999999999998 66777777752 12233333211 1134567899
Q ss_pred ecCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc------------cccHHHHHHHhHHHHHHHHHHHHHc-CC
Q psy7542 137 DVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF------------DDYMQTYVFLNTRGTRDMLNLSKQM-IH 196 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f------------~~~l~~~~~~NV~GT~~LLelA~~~-~~ 196 (762)
|+++++ +++.++ ..+|++||+||.... .+.++..+++|+.|...+.+++..+ ..
T Consensus 64 Dl~~~~------~v~~~~~~~~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 137 (262)
T PRK07984 64 DVAEDA------SIDAMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP 137 (262)
T ss_pred CCCCHH------HHHHHHHHHHhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcC
Confidence 999876 454433 358999999986421 1245567899999998888877543 11
Q ss_pred ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---
Q psy7542 197 LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--- 273 (762)
Q Consensus 197 lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--- 273 (762)
-.++|++||..+.... | ....|+.||+..+.+++..+..
T Consensus 138 ~g~Iv~iss~~~~~~~----------~----------------------------~~~~Y~asKaal~~l~~~la~el~~ 179 (262)
T PRK07984 138 GSALLTLSYLGAERAI----------P----------------------------NYNVMGLAKASLEANVRYMANAMGP 179 (262)
T ss_pred CcEEEEEecCCCCCCC----------C----------------------------CcchhHHHHHHHHHHHHHHHHHhcc
Confidence 2579999987542111 0 0147999999999999887762
Q ss_pred -CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCC
Q psy7542 274 -GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNT 352 (762)
Q Consensus 274 -glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~ 352 (762)
|+.+..+-||.|-.+... ++ ............ . .....+...+|++++++.++...... ..
T Consensus 180 ~gIrVn~i~PG~v~T~~~~---~~----~~~~~~~~~~~~-~--------~p~~r~~~pedva~~~~~L~s~~~~~--it 241 (262)
T PRK07984 180 EGVRVNAISAGPIRTLAAS---GI----KDFRKMLAHCEA-V--------TPIRRTVTIEDVGNSAAFLCSDLSAG--IS 241 (262)
T ss_pred cCcEEeeeecCcccchHHh---cC----CchHHHHHHHHH-c--------CCCcCCCCHHHHHHHHHHHcCccccc--cc
Confidence 899999999877543211 00 000011111111 0 01123567899999999887653321 13
Q ss_pred ceEEEecCC
Q psy7542 353 MRVINLTAN 361 (762)
Q Consensus 353 ~~iyNi~s~ 361 (762)
+.++.+.++
T Consensus 242 G~~i~vdgg 250 (262)
T PRK07984 242 GEVVHVDGG 250 (262)
T ss_pred CcEEEECCC
Confidence 566666554
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-10 Score=112.68 Aligned_cols=150 Identities=21% Similarity=0.225 Sum_probs=111.9
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|+||||+|-||..++++|++++ +.+|+++.|. ...++++++.+ .++ ....++.++++|++++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g-~~~v~~~~r~----~~~~~~~~l~~-----~l~------~~~~~~~~~~~D~~~~ 64 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRG-ARVVILTSRS----EDSEGAQELIQ-----ELK------APGAKITFIECDLSDP 64 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT-TEEEEEEESS----CHHHHHHHHHH-----HHH------HTTSEEEEEESETTSH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcC-ceEEEEeeec----ccccccccccc-----ccc------cccccccccccccccc
Confidence 689999999999999999999992 3388888887 12233333311 111 1237899999999986
Q ss_pred CCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCc
Q psy7542 142 DLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAY 207 (762)
Q Consensus 142 ~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay 207 (762)
+ +++++++ .+|++||+|+.... .+.++..+++|+.+...+.+++.. .+-.++|++||..
T Consensus 65 ~------~~~~~~~~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~g~iv~~sS~~ 137 (167)
T PF00106_consen 65 E------SIRALIEEVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-QGGGKIVNISSIA 137 (167)
T ss_dssp H------HHHHHHHHHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-HTTEEEEEEEEGG
T ss_pred c------cccccccccccccccccccccccccccccccccccchhhhhccccccceeeeeeehhee-ccccceEEecchh
Confidence 5 4554433 57999999998762 245667899999999999999988 4678999999986
Q ss_pred ccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH
Q psy7542 208 CHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME 272 (762)
Q Consensus 208 ~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~ 272 (762)
+..+. |. -..|+.||+..+.+++..+.
T Consensus 138 ~~~~~----------~~----------------------------~~~Y~askaal~~~~~~la~ 164 (167)
T PF00106_consen 138 GVRGS----------PG----------------------------MSAYSASKAALRGLTQSLAA 164 (167)
T ss_dssp GTSSS----------TT----------------------------BHHHHHHHHHHHHHHHHHHH
T ss_pred hccCC----------CC----------------------------ChhHHHHHHHHHHHHHHHHH
Confidence 54321 11 14799999999999988765
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >smart00312 PX PhoX homologous domain, present in p47phox and p40phox | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.1e-11 Score=108.23 Aligned_cols=89 Identities=30% Similarity=0.491 Sum_probs=70.7
Q ss_pred CCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhhhcccc
Q psy7542 532 CEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQWLGLNN 611 (762)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (762)
...+||+|.|++..+.+.|.|.||||||..||+ ++++.++.
T Consensus 10 ~~~~~~~~~v~~~~~~~~~~v~RRysdF~~L~~-----------------------------~L~~~~~~---------- 50 (105)
T smart00312 10 GKHYYYVIEIETKTGLEEWTVSRRYSDFLELHS-----------------------------KLKKHFPR---------- 50 (105)
T ss_pred CceEEEEEEEEECCCCceEEEEEEHHHHHHHHH-----------------------------HHHHHCcC----------
Confidence 345666776666666689999999999999998 66665521
Q ss_pred cccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC----CCChhHHHHHHHHHHHHHHHHHhcCCCh---HHHH
Q psy7542 612 VLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR----SNQPKVLDERRHLLEIYLKEMFKFGPSR---NQVL 684 (762)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 684 (762)
...|.||+|++. ++.++++++||..||.||+.++.....+ ..+.
T Consensus 51 -----------------------------~~lP~lP~k~~~~~~~~~~~~~i~~R~~~L~~yL~~l~~~~~~~~~s~~~~ 101 (105)
T smart00312 51 -----------------------------RILPPLPPKKLFGRLNNFSEEFIEKRRRGLERYLQSLLNHPELINESEVVL 101 (105)
T ss_pred -----------------------------CCCCCCCCchhcccCCcCCHHHHHHHHHHHHHHHHHHHcCHhhhccChHHH
Confidence 267999999864 4689999999999999999999876554 5688
Q ss_pred hhhC
Q psy7542 685 AFLG 688 (762)
Q Consensus 685 ~~~~ 688 (762)
+||.
T Consensus 102 ~Fl~ 105 (105)
T smart00312 102 SFLE 105 (105)
T ss_pred HhcC
Confidence 8873
|
Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform. |
| >KOG4039|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.8e-11 Score=113.96 Aligned_cols=200 Identities=18% Similarity=0.152 Sum_probs=145.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
++++++||.||||-.|+.|++.+++. |.. +|+++.|.+... +....++..+..|
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~-~~FSKV~~i~RR~~~d------------------------~at~k~v~q~~vD 70 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEA-PQFSKVYAILRRELPD------------------------PATDKVVAQVEVD 70 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhc-ccceeEEEEEeccCCC------------------------ccccceeeeEEec
Confidence 47889999999999999999999998 678 999999985321 3345677788888
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCccccc
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEE 217 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E 217 (762)
....+ ++.....++|+.|.|-|+.+-....+.++++.-.-...+.++|++. +++.|+.+||+.+.....
T Consensus 71 f~Kl~------~~a~~~qg~dV~FcaLgTTRgkaGadgfykvDhDyvl~~A~~AKe~-Gck~fvLvSS~GAd~sSr---- 139 (238)
T KOG4039|consen 71 FSKLS------QLATNEQGPDVLFCALGTTRGKAGADGFYKVDHDYVLQLAQAAKEK-GCKTFVLVSSAGADPSSR---- 139 (238)
T ss_pred hHHHH------HHHhhhcCCceEEEeecccccccccCceEeechHHHHHHHHHHHhC-CCeEEEEEeccCCCcccc----
Confidence 87654 6777778899999999988765555556666666677888999885 999999999998765443
Q ss_pred ccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCC-C
Q psy7542 218 KTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPG-W 296 (762)
Q Consensus 218 ~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pG-W 296 (762)
-.|-.+|-..|+-+.+..- -.++|+|||.+.|...+..+| |
T Consensus 140 ------------------------------------FlY~k~KGEvE~~v~eL~F--~~~~i~RPG~ll~~R~esr~gef 181 (238)
T KOG4039|consen 140 ------------------------------------FLYMKMKGEVERDVIELDF--KHIIILRPGPLLGERTESRQGEF 181 (238)
T ss_pred ------------------------------------eeeeeccchhhhhhhhccc--cEEEEecCcceecccccccccch
Confidence 3588889988888876621 368999999999998775544 3
Q ss_pred CCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 297 TDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 297 idn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
.-+. ..+. +++.-++.--.||--++.+++..+..+.
T Consensus 182 lg~~----------~~a~----l~~~~~R~~s~pv~~~~~amvn~~~~~~ 217 (238)
T KOG4039|consen 182 LGNL----------TAAL----LRSRFQRLLSYPVYGDEVAMVNVLNTSG 217 (238)
T ss_pred hhhe----------ehhh----hhhHHHhccCCchhhhhHhHhhccccCC
Confidence 2222 1111 1222333345677667777777654443
|
|
| >cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=105.01 Aligned_cols=99 Identities=30% Similarity=0.560 Sum_probs=81.8
Q ss_pred ccccceeeec-CCCCeEEEEEEEEEcC-eEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhc
Q psy7542 522 ISVSGYRLIE-CEKPYYVYVIHVRMFQ-QHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNC 599 (762)
Q Consensus 522 ~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (762)
|.|.+++... ..+++++|.|.|.... ..|.|.||||||..||. ++++.+
T Consensus 2 i~I~~~~~~~~~~~~~~~Y~i~v~~~~~~~~~v~rrysdF~~L~~-----------------------------~L~~~~ 52 (106)
T cd06093 2 VSIPDYEKVKDGGKKYVVYIIEVTTQGGEEWTVYRRYSDFEELHE-----------------------------KLKKKF 52 (106)
T ss_pred EEeCCceEEcCCCCCEEEEEEEEEECCCCeEEEEeehHHHHHHHH-----------------------------HHHHHC
Confidence 4566666542 4578999999999988 89999999999999998 666655
Q ss_pred hhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCC-CChhHHHHHHHHHHHHHHHHHhcCC
Q psy7542 600 KYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRS-NQPKVLDERRHLLEIYLKEMFKFGP 678 (762)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (762)
.. ...|.||+|+... .+++++++|+..|+.||+.++....
T Consensus 53 ~~---------------------------------------~~~p~lP~k~~~~~~~~~~~~~R~~~L~~yl~~l~~~~~ 93 (106)
T cd06093 53 PG---------------------------------------VILPPLPPKKLFGNLDPEFIEERRKQLEQYLQSLLNHPE 93 (106)
T ss_pred CC---------------------------------------CccCCCCCCcccccCCHHHHHHHHHHHHHHHHHHhcCcc
Confidence 21 2789999998754 4899999999999999999999887
Q ss_pred Ch--HHHHhhhC
Q psy7542 679 SR--NQVLAFLG 688 (762)
Q Consensus 679 ~~--~~~~~~~~ 688 (762)
.. ..+.+||.
T Consensus 94 ~~~~~~~~~Fl~ 105 (106)
T cd06093 94 LRNSEELKEFLE 105 (106)
T ss_pred cccChHHHHHhC
Confidence 76 88888885
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting. |
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-09 Score=114.45 Aligned_cols=221 Identities=14% Similarity=0.078 Sum_probs=138.8
Q ss_pred cCCCEEEEECC--CChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGA--SGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGA--TGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
+++|+++|||| ++.||.+++++|++. +.+|++..|.... +.++++.+ ....++.++.+
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~--G~~v~l~~r~~~~----~~~~~~~~--------------~~~~~~~~~~~ 64 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQ--GAEVVLTGFGRAL----RLTERIAK--------------RLPEPAPVLEL 64 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHC--CCEEEEecCccch----hHHHHHHH--------------hcCCCCcEEeC
Confidence 47899999999 899999999999998 6788888875421 11222110 11235778999
Q ss_pred ecCCCCCCCCHHHHHhhc-------CCccEEEEcccccC-------cc----ccHHHHHHHhHHHHHHHHHHHHH-cCCc
Q psy7542 137 DVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVR-------FD----DYMQTYVFLNTRGTRDMLNLSKQ-MIHL 197 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~-------f~----~~l~~~~~~NV~GT~~LLelA~~-~~~l 197 (762)
|+++++ +++.++ ..+|++||+|+... +. +.+...+++|+.|+..+.+.+.. +..-
T Consensus 65 Dv~~~~------~i~~~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~ 138 (256)
T PRK07889 65 DVTNEE------HLASLADRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEG 138 (256)
T ss_pred CCCCHH------HHHHHHHHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccC
Confidence 999875 343332 46899999999752 11 23455789999999988887754 2222
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----c
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----A 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~ 273 (762)
.++|++|+....+ .|. ...|+.||+..+.+.+..+. .
T Consensus 139 g~Iv~is~~~~~~-----------~~~----------------------------~~~Y~asKaal~~l~~~la~el~~~ 179 (256)
T PRK07889 139 GSIVGLDFDATVA-----------WPA----------------------------YDWMGVAKAALESTNRYLARDLGPR 179 (256)
T ss_pred ceEEEEeeccccc-----------CCc----------------------------cchhHHHHHHHHHHHHHHHHHhhhc
Confidence 4788887542100 010 14689999988888877655 3
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+.+..+.||.|-.+.....++ ............ + ....+...+|+|++++.++...... ..+
T Consensus 180 gIrvn~v~PG~v~T~~~~~~~~-------~~~~~~~~~~~~----p----~~~~~~~p~evA~~v~~l~s~~~~~--~tG 242 (256)
T PRK07889 180 GIRVNLVAAGPIRTLAAKAIPG-------FELLEEGWDERA----P----LGWDVKDPTPVARAVVALLSDWFPA--TTG 242 (256)
T ss_pred CeEEEeeccCcccChhhhcccC-------cHHHHHHHHhcC----c----cccccCCHHHHHHHHHHHhCccccc--ccc
Confidence 8999999999886543221111 011111111100 0 0113567899999999988654321 135
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++.+.++
T Consensus 243 ~~i~vdgg 250 (256)
T PRK07889 243 EIVHVDGG 250 (256)
T ss_pred eEEEEcCc
Confidence 66766554
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.9e-10 Score=131.76 Aligned_cols=219 Identities=13% Similarity=0.085 Sum_probs=141.8
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+++||||++.||..++++|++. +.+|+++.|.. ++++++.+ ....++..+.+|++
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~D~~ 61 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARA--GDQVVVADRNV------ERARERAD--------------SLGPDHHALAMDVS 61 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH--------------HhCCceeEEEeccC
Confidence 6899999999999999999999998 67888888863 23332211 11245678999999
Q ss_pred CCCCCCCHHHHHhhc-------CCccEEEEcccccC-----c----cccHHHHHHHhHHHHHHHHHHHHHc---CCc-cE
Q psy7542 140 VPDLGISAEDRQMLS-------ETIHIVYHIAATVR-----F----DDYMQTYVFLNTRGTRDMLNLSKQM---IHL-QL 199 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~-----f----~~~l~~~~~~NV~GT~~LLelA~~~---~~l-k~ 199 (762)
+++ +++.++ ..+|++||+|+... + .+.++..+++|+.|+..+++++... .+- .+
T Consensus 62 ~~~------~~~~~~~~~~~~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~ 135 (520)
T PRK06484 62 DEA------QIREGFEQLHREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAA 135 (520)
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCe
Confidence 876 444433 35899999998631 1 1346778999999999999888653 122 38
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----gl 275 (762)
+|++||..+..... + ...|+.||+..+.+++..+.. ++
T Consensus 136 iv~isS~~~~~~~~---~-----------------------------------~~~Y~asKaal~~l~~~la~e~~~~~i 177 (520)
T PRK06484 136 IVNVASGAGLVALP---K-----------------------------------RTAYSASKAAVISLTRSLACEWAAKGI 177 (520)
T ss_pred EEEECCcccCCCCC---C-----------------------------------CchHHHHHHHHHHHHHHHHHHhhhhCe
Confidence 99999985532210 0 157999999999988776552 79
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
+++.+.||.|-.+..... .............. ++ ...+...+++++++..++...... ..+.+
T Consensus 178 ~v~~i~Pg~v~t~~~~~~-------~~~~~~~~~~~~~~---~~-----~~~~~~~~~va~~v~~l~~~~~~~--~~G~~ 240 (520)
T PRK06484 178 RVNAVLPGYVRTQMVAEL-------ERAGKLDPSAVRSR---IP-----LGRLGRPEEIAEAVFFLASDQASY--ITGST 240 (520)
T ss_pred EEEEEccCCcCchhhhhh-------cccchhhhHHHHhc---CC-----CCCCcCHHHHHHHHHHHhCccccC--ccCce
Confidence 999999997754432110 00000000000000 00 112467899999998877653321 13556
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+.+..+
T Consensus 241 ~~~~gg 246 (520)
T PRK06484 241 LVVDGG 246 (520)
T ss_pred EEecCC
Confidence 655443
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.4e-10 Score=118.97 Aligned_cols=167 Identities=13% Similarity=0.088 Sum_probs=112.4
Q ss_pred EEEEECCCChhHHHHHHHHHHcC--CCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTC--ENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~g--p~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
.|+||||||.||.+++++|++.. .+.+|+++.|+.. +++++.+ .++. .....++.++.+|+++
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~------~~~~~~~-----~l~~----~~~~~~v~~~~~Dl~~ 66 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDE------ALRQLKA-----EIGA----ERSGLRVVRVSLDLGA 66 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHH------HHHHHHH-----HHHh----cCCCceEEEEEeccCC
Confidence 58999999999999999999721 2678899988632 2222211 1111 0112468889999998
Q ss_pred CCCCCCHHHHHhhcCC-----------ccEEEEcccccC-----cc-----ccHHHHHHHhHHHHHHHHHHHHHc----C
Q psy7542 141 PDLGISAEDRQMLSET-----------IHIVYHIAATVR-----FD-----DYMQTYVFLNTRGTRDMLNLSKQM----I 195 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~-----------vDiViH~AA~v~-----f~-----~~l~~~~~~NV~GT~~LLelA~~~----~ 195 (762)
++ +++.+++. .|+|||+||... +. +.+...+++|+.|+..+.+.+... +
T Consensus 67 ~~------~v~~~~~~~~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~ 140 (256)
T TIGR01500 67 EA------GLEQLLKALRELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSP 140 (256)
T ss_pred HH------HHHHHHHHHHhccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence 65 44433321 259999998642 11 345678999999988887776542 1
Q ss_pred C-ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-
Q psy7542 196 H-LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA- 273 (762)
Q Consensus 196 ~-lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~- 273 (762)
+ -.++|++||..+.... |. -..|+.||+..+.+++..+..
T Consensus 141 ~~~~~iv~isS~~~~~~~----------~~----------------------------~~~Y~asKaal~~l~~~la~e~ 182 (256)
T TIGR01500 141 GLNRTVVNISSLCAIQPF----------KG----------------------------WALYCAGKAARDMLFQVLALEE 182 (256)
T ss_pred CCCCEEEEECCHHhCCCC----------CC----------------------------chHHHHHHHHHHHHHHHHHHHh
Confidence 1 2579999998553211 10 147999999999999887652
Q ss_pred ---CCCEEEEeeeeeccC
Q psy7542 274 ---GMPCMILRPSIIIPI 288 (762)
Q Consensus 274 ---glpv~IvRPs~V~G~ 288 (762)
|+.++.+.||.|-.+
T Consensus 183 ~~~~i~v~~v~PG~v~T~ 200 (256)
T TIGR01500 183 KNPNVRVLNYAPGVLDTD 200 (256)
T ss_pred cCCCeEEEEecCCcccch
Confidence 788999999877443
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-09 Score=118.97 Aligned_cols=175 Identities=15% Similarity=0.138 Sum_probs=115.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcc----hHHHHHHHhcChhHHHHHhhhhcccccCCeEEE
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKN----SRERLEEIFQSPLYEALKKEQSESAIFEKVIPI 134 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~----~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V 134 (762)
++||+++||||++.||.+++++|++. +.+|++..|...... ..++++++.+ .+ .....++.++
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~--G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~-----~l------~~~~~~~~~~ 72 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAA--GATVYVTGRSTRARRSEYDRPETIEETAE-----LV------TAAGGRGIAV 72 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEecccccccccccccchHHHHHH-----HH------HhcCCceEEE
Confidence 47899999999999999999999998 678888888643210 0122222110 01 1112467789
Q ss_pred EeecCCCCCCCCHHHHHhhc-------CCccEEEEcc-ccc-------Cc----cccHHHHHHHhHHHHHHHHHHHHHc-
Q psy7542 135 NGDVAVPDLGISAEDRQMLS-------ETIHIVYHIA-ATV-------RF----DDYMQTYVFLNTRGTRDMLNLSKQM- 194 (762)
Q Consensus 135 ~GDl~~~~LGLs~~~l~~l~-------~~vDiViH~A-A~v-------~f----~~~l~~~~~~NV~GT~~LLelA~~~- 194 (762)
.+|+++++ +++.++ ..+|++||+| +.. .+ .+.+...+++|+.|+..+.+++...
T Consensus 73 ~~Dv~~~~------~v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m 146 (305)
T PRK08303 73 QVDHLVPE------QVRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLL 146 (305)
T ss_pred EcCCCCHH------HHHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999875 444433 3589999999 632 11 1234567889999998888777542
Q ss_pred --CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH
Q psy7542 195 --IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME 272 (762)
Q Consensus 195 --~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~ 272 (762)
.+-.++|++||..+..... +.+. -..|+.||+..+.+.+..+.
T Consensus 147 ~~~~~g~IV~isS~~~~~~~~-------~~~~----------------------------~~~Y~asKaal~~lt~~La~ 191 (305)
T PRK08303 147 IRRPGGLVVEITDGTAEYNAT-------HYRL----------------------------SVFYDLAKTSVNRLAFSLAH 191 (305)
T ss_pred hhCCCcEEEEECCccccccCc-------CCCC----------------------------cchhHHHHHHHHHHHHHHHH
Confidence 1225899999863311000 0000 03699999998888876655
Q ss_pred ----cCCCEEEEeeeeecc
Q psy7542 273 ----AGMPCMILRPSIIIP 287 (762)
Q Consensus 273 ----~glpv~IvRPs~V~G 287 (762)
.|+.+..+.||.|-.
T Consensus 192 el~~~gIrVn~v~PG~v~T 210 (305)
T PRK08303 192 ELAPHGATAVALTPGWLRS 210 (305)
T ss_pred HhhhcCcEEEEecCCcccc
Confidence 279999999986643
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.2e-10 Score=120.17 Aligned_cols=194 Identities=16% Similarity=0.103 Sum_probs=115.4
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCC-cEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCEN-VKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~-v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
+++++|||||+.||.+++++|++. + .+|+++.|... +++++.+ .+ .....++..+.+|++
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~--G~~~V~l~~r~~~------~~~~~~~-----~l------~~~~~~~~~~~~Dl~ 63 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAAT--GEWHVIMACRDFL------KAEQAAK-----SL------GMPKDSYTIMHLDLG 63 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHc--CCCEEEEEeCCHH------HHHHHHH-----Hh------cCCCCeEEEEEcCCC
Confidence 679999999999999999999998 6 68888888642 2222211 01 111246788999999
Q ss_pred CCCCCCCHHHHHhh-------cCCccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHH----cC-CccE
Q psy7542 140 VPDLGISAEDRQML-------SETIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQ----MI-HLQL 199 (762)
Q Consensus 140 ~~~LGLs~~~l~~l-------~~~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~----~~-~lk~ 199 (762)
+++ +++.+ ...+|++||+||.... .+.++..+++|+.|+..+.+++.. .+ +..+
T Consensus 64 ~~~------~v~~~~~~~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~ 137 (314)
T TIGR01289 64 SLD------SVRQFVQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKR 137 (314)
T ss_pred CHH------HHHHHHHHHHHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCe
Confidence 875 33332 2468999999996421 134567899999998888766543 21 1368
Q ss_pred EEEEeCCcccCCCc--ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH-----
Q psy7542 200 FVYVSTAYCHPKEK--VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----- 272 (762)
Q Consensus 200 fV~vSSay~~~~~~--~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----- 272 (762)
+|++||..+..... .+. .+.+..++.......... ....... .......|+.||+....+.++.++
T Consensus 138 IV~vsS~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~Y~~SK~a~~~~~~~la~~~~~~ 210 (314)
T TIGR01289 138 LIIVGSITGNTNTLAGNVP-----PKANLGDLSGLAAGFKAP-IAMIDGK-EFKGAKAYKDSKVCNMLTVRELHRRFHDE 210 (314)
T ss_pred EEEEecCccccccCCCcCC-----CcccccccccccccCCCc-ccccCCC-CcchhhhHHHhHHHHHHHHHHHHHHhccC
Confidence 99999986543210 000 000000000000000000 0000000 001114799999997777666543
Q ss_pred cCCCEEEEeeeeec
Q psy7542 273 AGMPCMILRPSIII 286 (762)
Q Consensus 273 ~glpv~IvRPs~V~ 286 (762)
.|+.++.++||.|.
T Consensus 211 ~gi~v~~v~PG~v~ 224 (314)
T TIGR01289 211 TGITFASLYPGCIA 224 (314)
T ss_pred CCeEEEEecCCccc
Confidence 26889999999884
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >KOG1201|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.5e-09 Score=112.81 Aligned_cols=204 Identities=16% Similarity=0.155 Sum_probs=136.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.+|+.||||||++.||+.++.+++++ +.++.+-+..+.+. ++-.+++. .. .++....+|+
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~r--g~~~vl~Din~~~~--~etv~~~~---------------~~-g~~~~y~cdi 95 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKR--GAKLVLWDINKQGN--EETVKEIR---------------KI-GEAKAYTCDI 95 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHh--CCeEEEEeccccch--HHHHHHHH---------------hc-CceeEEEecC
Confidence 48999999999999999999999999 56777777766542 22222211 11 3788999999
Q ss_pred CCCC-CCCCHHHHHhhcCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHH----HHHcCCccEEEEEeCC
Q psy7542 139 AVPD-LGISAEDRQMLSETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNL----SKQMIHLQLFVYVSTA 206 (762)
Q Consensus 139 ~~~~-LGLs~~~l~~l~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLel----A~~~~~lk~fV~vSSa 206 (762)
++.+ +-.....+++-..++|++|++||.+.. ++.++..+++|+.|.....++ ..+. +-.++|.++|+
T Consensus 96 s~~eei~~~a~~Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~-~~GHIV~IaS~ 174 (300)
T KOG1201|consen 96 SDREEIYRLAKKVKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLEN-NNGHIVTIASV 174 (300)
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhc-CCceEEEehhh
Confidence 9976 111111222233468999999998753 355677899999996665444 3343 44699999998
Q ss_pred cccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHH----H---cCCCEEE
Q psy7542 207 YCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYM----E---AGMPCMI 279 (762)
Q Consensus 207 y~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~----~---~glpv~I 279 (762)
.+......+ ..|+.||+.+.-.-+... . .|+.++.
T Consensus 175 aG~~g~~gl--------------------------------------~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTl 216 (300)
T KOG1201|consen 175 AGLFGPAGL--------------------------------------ADYCASKFAAVGFHESLSMELRALGKDGIKTTL 216 (300)
T ss_pred hcccCCccc--------------------------------------hhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEE
Confidence 664432110 479999998865554443 2 2788999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
+-|+.+=. +++.. .. .-......++.+.||+.|+.+......
T Consensus 217 v~P~~i~T-----------------gmf~~--~~-------~~~~l~P~L~p~~va~~Iv~ai~~n~~ 258 (300)
T KOG1201|consen 217 VCPYFINT-----------------GMFDG--AT-------PFPTLAPLLEPEYVAKRIVEAILTNQA 258 (300)
T ss_pred Eeeeeccc-----------------cccCC--CC-------CCccccCCCCHHHHHHHHHHHHHcCCc
Confidence 99987631 12211 00 112345688999999999999987654
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.2e-09 Score=109.62 Aligned_cols=193 Identities=12% Similarity=0.062 Sum_probs=124.7
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|+||||++.||+.++++|. . +.+|+++.|... +++++.+ .++. ....++..+.+|++++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~--g~~Vil~~r~~~------~~~~~~~-----~l~~-----~~~~~~~~~~~Dv~d~ 61 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-H--GEDVVLAARRPE------AAQGLAS-----DLRQ-----RGATSVHVLSFDAQDL 61 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-C--CCEEEEEeCCHH------HHHHHHH-----HHHh-----ccCCceEEEEcccCCH
Confidence 579999999999999999997 5 578888888642 2322211 1111 1123578899999997
Q ss_pred CCCCCHHHHHh-------hcCCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHH----HcCCccEEEEE
Q psy7542 142 DLGISAEDRQM-------LSETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSK----QMIHLQLFVYV 203 (762)
Q Consensus 142 ~LGLs~~~l~~-------l~~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~----~~~~lk~fV~v 203 (762)
+ +++. ....+|++||+|+..... +...+..++|+.+...++..+. +.+.-.++|++
T Consensus 62 ~------~v~~~~~~~~~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~i 135 (246)
T PRK05599 62 D------THRELVKQTQELAGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAF 135 (246)
T ss_pred H------HHHHHHHHHHHhcCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 6 3332 234689999999975321 1233456788888876665542 22113589999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~I 279 (762)
||..+.... |. ...|+.||+..+.+.+..+.. |+.++.
T Consensus 136 sS~~~~~~~----------~~----------------------------~~~Y~asKaa~~~~~~~la~el~~~~I~v~~ 177 (246)
T PRK05599 136 SSIAGWRAR----------RA----------------------------NYVYGSTKAGLDAFCQGLADSLHGSHVRLII 177 (246)
T ss_pred eccccccCC----------cC----------------------------CcchhhHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 998653221 00 147999999988888776652 788888
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
+-||.|..+... +.. +.. -....+++|++++.++....
T Consensus 178 v~PG~v~T~~~~---------------------~~~------~~~--~~~~pe~~a~~~~~~~~~~~ 215 (246)
T PRK05599 178 ARPGFVIGSMTT---------------------GMK------PAP--MSVYPRDVAAAVVSAITSSK 215 (246)
T ss_pred ecCCcccchhhc---------------------CCC------CCC--CCCCHHHHHHHHHHHHhcCC
Confidence 888877543211 000 000 02467999999999888653
|
|
| >PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.7e-10 Score=101.99 Aligned_cols=99 Identities=27% Similarity=0.464 Sum_probs=76.6
Q ss_pred ccccceeeecCCCCeEEEEEEEEEcC--eEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhc
Q psy7542 522 ISVSGYRLIECEKPYYVYVIHVRMFQ--QHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNC 599 (762)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (762)
+++.+.+.. .++..++|.++|.... ..|.|.|||+||..||. ++++.+
T Consensus 6 v~v~~~~~~-~~~~~~~~~~~i~~~~~~~~~~v~rry~dF~~L~~-----------------------------~L~~~~ 55 (113)
T PF00787_consen 6 VSVVDPETS-GNKKKTYYIYQIELQDGKESWSVYRRYSDFYELHR-----------------------------KLKKRF 55 (113)
T ss_dssp EEEEEEEEE-SSSSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHH-----------------------------HHHHHH
T ss_pred EEEcCCEEE-cCCCEEEEEEEEEECCCCEEEEEEEEHHHHHHHHH-----------------------------HHhhhh
Confidence 344444443 4555666666666665 59999999999999998 566555
Q ss_pred hhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCC----CChhHHHHHHHHHHHHHHHHHh
Q psy7542 600 KYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRS----NQPKVLDERRHLLEIYLKEMFK 675 (762)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 675 (762)
+ ....|.||+|.... ++++++++|++.||.||+.+++
T Consensus 56 ~---------------------------------------~~~~p~~P~~~~~~~~~~~~~~~~~~R~~~L~~yL~~l~~ 96 (113)
T PF00787_consen 56 P---------------------------------------SRKLPPFPPKQWFSNSRNLDPEFIEERRQALEKYLQSLLS 96 (113)
T ss_dssp T---------------------------------------TSGSTSSSTSSSSSSSSTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred c---------------------------------------ccccccCCccccccccccccHHHHHHHHHHHHHHHHHHHc
Confidence 3 23788999998643 7999999999999999999998
Q ss_pred cCCCh--HHHHhhhCC
Q psy7542 676 FGPSR--NQVLAFLGV 689 (762)
Q Consensus 676 ~~~~~--~~~~~~~~~ 689 (762)
....+ ..+..||..
T Consensus 97 ~~~~~~s~~l~~FL~~ 112 (113)
T PF00787_consen 97 HPELRSSEALKEFLES 112 (113)
T ss_dssp SCHHHHSHHHHHHHCT
T ss_pred ChhhhCchHHHHhcCC
Confidence 86655 899999974
|
PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A .... |
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.4e-09 Score=111.17 Aligned_cols=164 Identities=13% Similarity=0.151 Sum_probs=111.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++|++++||||++-||+.++++|++. +.+|++..|..+ +++++.+ .+. ....++..+.+|+
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~--G~~V~~~~r~~~------~l~~~~~-----~i~------~~~~~~~~~~~D~ 63 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARL--GATLILCDQDQS------ALKDTYE-----QCS------ALTDNVYSFQLKD 63 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHC--CCEEEEEcCCHH------HHHHHHH-----HHH------hcCCCeEEEEccC
Confidence 47899999999999999999999998 778888888542 2222211 111 1124577888999
Q ss_pred CCCCCCCCHHHHHhhc-------C-CccEEEEcccccC----cc----ccHHHHHHHhHHHHHHHHHHHHH-c---CCcc
Q psy7542 139 AVPDLGISAEDRQMLS-------E-TIHIVYHIAATVR----FD----DYMQTYVFLNTRGTRDMLNLSKQ-M---IHLQ 198 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~-~vDiViH~AA~v~----f~----~~l~~~~~~NV~GT~~LLelA~~-~---~~lk 198 (762)
++++ +++.++ . .+|++||+|+... +. +.+...+.+|+.++..+++.+.. + +.-.
T Consensus 64 ~~~~------~~~~~~~~~~~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g 137 (227)
T PRK08862 64 FSQE------SIRHLFDAIEQQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKG 137 (227)
T ss_pred CCHH------HHHHHHHHHHHHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCc
Confidence 8765 444332 3 6899999997432 11 23445677888888777665532 1 1235
Q ss_pred EEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cC
Q psy7542 199 LFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AG 274 (762)
Q Consensus 199 ~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~g 274 (762)
.+|++||..+... ...|+.||+.-+.+.+..+. .|
T Consensus 138 ~Iv~isS~~~~~~-----------------------------------------~~~Y~asKaal~~~~~~la~el~~~~ 176 (227)
T PRK08862 138 VIVNVISHDDHQD-----------------------------------------LTGVESSNALVSGFTHSWAKELTPFN 176 (227)
T ss_pred eEEEEecCCCCCC-----------------------------------------cchhHHHHHHHHHHHHHHHHHHhhcC
Confidence 8999998643210 14699999998888877655 28
Q ss_pred CCEEEEeeeeeccC
Q psy7542 275 MPCMILRPSIIIPI 288 (762)
Q Consensus 275 lpv~IvRPs~V~G~ 288 (762)
+.+..+.||.+-..
T Consensus 177 Irvn~v~PG~i~t~ 190 (227)
T PRK08862 177 IRVGGVVPSIFSAN 190 (227)
T ss_pred cEEEEEecCcCcCC
Confidence 99999999976444
|
|
| >cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.2e-10 Score=102.59 Aligned_cols=106 Identities=18% Similarity=0.170 Sum_probs=79.6
Q ss_pred cccccceeeecCCCCeEEEEEEEEE-cCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhc
Q psy7542 521 CISVSGYRLIECEKPYYVYVIHVRM-FQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNC 599 (762)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (762)
+++|.++...+. +|+|+|.|.+ .+.+|+|.|||+||..||. +++...
T Consensus 2 ~~~V~~~~~~~~---~y~Y~i~v~~s~~~~~~v~RrY~dFy~Lh~-----------------------------~L~~~f 49 (112)
T cd06890 2 SASVESVLLEDN---RYWYRVRATLSDGKTRYLCRYYQDFYKLHI-----------------------------ALLDLF 49 (112)
T ss_pred eEEEEEEEEECC---EEEEEEEEEEcCCcEEEEEEEHHHHHHHHH-----------------------------HHHHhC
Confidence 456777776633 8999999999 6889999999999999999 555444
Q ss_pred hhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHHhcCCC
Q psy7542 600 KYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGPS 679 (762)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (762)
+.- - |. ++.....|.+|+|...+...+.+++||+.|+.||++++...+.
T Consensus 50 p~e----a----------g~-----------------~~~~~~lP~lP~~~~~~~~~~~~e~R~~~L~~Yl~~Ll~~p~~ 98 (112)
T cd06890 50 PAE----A----------GR-----------------NSSKRILPYLPGPVTDVVNDSISLKRLNDLNEYLNELINLPAY 98 (112)
T ss_pred cHh----h----------CC-----------------CCCCCcCCCCCCCccCcchhHHHHHHHHHHHHHHHHHHcCCHH
Confidence 210 0 00 0123356778777767678999999999999999999988733
Q ss_pred h---HHHHhhhCC
Q psy7542 680 R---NQVLAFLGV 689 (762)
Q Consensus 680 ~---~~~~~~~~~ 689 (762)
. ..|..|+..
T Consensus 99 i~~s~~v~~Ff~~ 111 (112)
T cd06890 99 IQTSEVVRDFFAN 111 (112)
T ss_pred hccCHHHHHHcCc
Confidence 3 888988853
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p |
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-09 Score=107.20 Aligned_cols=160 Identities=17% Similarity=0.209 Sum_probs=111.4
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC-CCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPK-KNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~-~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
+++||||+|-||..+++.|.+++ ..+|+++.|+. .....++.++++. ....+|.++.+|++++
T Consensus 2 tylitGG~gglg~~la~~La~~~-~~~~il~~r~~~~~~~~~~~i~~l~---------------~~g~~v~~~~~Dv~d~ 65 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERG-ARRLILLGRSGAPSAEAEAAIRELE---------------SAGARVEYVQCDVTDP 65 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT--SEEEEEESSGGGSTTHHHHHHHHH---------------HTT-EEEEEE--TTSH
T ss_pred EEEEECCccHHHHHHHHHHHHcC-CCEEEEeccCCCccHHHHHHHHHHH---------------hCCCceeeeccCccCH
Confidence 68999999999999999999993 33999999983 3333334444431 2246899999999987
Q ss_pred CCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCc
Q psy7542 142 DLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAY 207 (762)
Q Consensus 142 ~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay 207 (762)
+ ++.++++ .++.|||+|+.... .+.+...+..-+.|+.+|.++.... .++.||.+||+.
T Consensus 66 ~------~v~~~~~~~~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~-~l~~~i~~SSis 138 (181)
T PF08659_consen 66 E------AVAAALAQLRQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENR-PLDFFILFSSIS 138 (181)
T ss_dssp H------HHHHHHHTSHTTSS-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTT-TTSEEEEEEEHH
T ss_pred H------HHHHHHHHHHhccCCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcC-CCCeEEEECChh
Confidence 6 5665543 46899999998642 1345667888999999999999875 889999999985
Q ss_pred ccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeee
Q psy7542 208 CHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPS 283 (762)
Q Consensus 208 ~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs 283 (762)
+..... ....|+.+....+.+.......|.|+..+.-+
T Consensus 139 ~~~G~~--------------------------------------gq~~YaaAN~~lda~a~~~~~~g~~~~sI~wg 176 (181)
T PF08659_consen 139 SLLGGP--------------------------------------GQSAYAAANAFLDALARQRRSRGLPAVSINWG 176 (181)
T ss_dssp HHTT-T--------------------------------------TBHHHHHHHHHHHHHHHHHHHTTSEEEEEEE-
T ss_pred HhccCc--------------------------------------chHhHHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 422110 01579999999999988776669998888766
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1 | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.4e-10 Score=106.59 Aligned_cols=32 Identities=19% Similarity=0.366 Sum_probs=29.8
Q ss_pred CCeEEEEEEEEEcCeEEEEEeehhhHHhhhhc
Q psy7542 534 KPYYVYVIHVRMFQQHYIVEKRYSELLSWHSE 565 (762)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (762)
.-|++|.|+|+.+..+|.|+|||++|..||.+
T Consensus 23 ~~~t~Y~I~v~~g~~~w~V~rRy~~F~~Lh~~ 54 (135)
T cd07296 23 PSLNVYTIELTHGEFTWQVKRKFKHFQELHRE 54 (135)
T ss_pred cceEEEEEEEEeCCEEEEEEeehHHHHHHHHH
Confidence 35899999999999999999999999999993
|
The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will |
| >cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.5e-10 Score=103.19 Aligned_cols=108 Identities=21% Similarity=0.331 Sum_probs=77.9
Q ss_pred ccccceeeecCCCCeEEEEEEEEEc-CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhch
Q psy7542 522 ISVSGYRLIECEKPYYVYVIHVRMF-QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCK 600 (762)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (762)
+.|.+.+.......||+|+|+|... +..|.|.||||||..+|. +++..+.
T Consensus 4 ~~v~~~ekr~~~~k~y~Y~i~V~~~dg~~~~v~RrYs~F~~Lh~-----------------------------~L~~~FP 54 (119)
T cd06888 4 VKVIDVEKRRAPSKHYVYIINVTWSDGSSNVIYRRYSKFFDLQM-----------------------------QLLDKFP 54 (119)
T ss_pred EEEEEEEEEecCCCcEEEEEEEEEcCCCEEEEEEeHHHHHHHHH-----------------------------HHHHhCc
Confidence 3455555555566788999999875 557899999999999998 5555542
Q ss_pred hhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCC--CChhHHHHHHHHHHHHHHHHHhcCC
Q psy7542 601 YFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRS--NQPKVLDERRHLLEIYLKEMFKFGP 678 (762)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (762)
.- +|.. .+..--.|.+|+|++-. ++.+++++|+..|+.||+++++..+
T Consensus 55 ~e--------------ag~~----------------~~~~r~lP~lP~k~~~g~s~~~~~~e~R~~~L~~Yl~~Ll~lp~ 104 (119)
T cd06888 55 IE--------------GGQK----------------DPSQRIIPFLPGKILFRRSHIRDVAVKRLKPIDEYCKALVRLPP 104 (119)
T ss_pred hh--------------hccC----------------CCCccccCCCCCCcccCcchhHHHHHHHHHHHHHHHHHHHcCCc
Confidence 10 0000 00111378899998743 4567999999999999999999887
Q ss_pred Ch---HHHHhhhC
Q psy7542 679 SR---NQVLAFLG 688 (762)
Q Consensus 679 ~~---~~~~~~~~ 688 (762)
.. ..|+.|+.
T Consensus 105 ~Is~~~~v~~FF~ 117 (119)
T cd06888 105 HISQCDEVLRFFE 117 (119)
T ss_pred eeecCHHHHHhcC
Confidence 65 88888875
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains |
| >cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30 | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.3e-10 Score=103.05 Aligned_cols=88 Identities=18% Similarity=0.336 Sum_probs=69.8
Q ss_pred CCCeEEEEEEEEEcC-----eEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhhh
Q psy7542 533 EKPYYVYVIHVRMFQ-----QHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQWL 607 (762)
Q Consensus 533 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
...|++|.|+..... ..|.|.||||||..||+ ++...+.
T Consensus 15 ~~~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~-----------------------------~L~~~~p------- 58 (116)
T cd07283 15 METYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRN-----------------------------KLEESQP------- 58 (116)
T ss_pred CcCeEEEEEEEecCCCCcccCceEEeCCccHHHHHHH-----------------------------HHHHhCC-------
Confidence 467999999998653 57899999999999998 4443331
Q ss_pred cccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-----CCCChhHHHHHHHHHHHHHHHHHhcCCCh--
Q psy7542 608 GLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-----RSNQPKVLDERRHLLEIYLKEMFKFGPSR-- 680 (762)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 680 (762)
....|..|+|+. ...+++++|+||++||.||+.+.....-+
T Consensus 59 --------------------------------~~~iPpLP~K~~~~~~~~~~~~~fie~Rr~~Le~FL~~i~~hp~L~~s 106 (116)
T cd07283 59 --------------------------------THLIPPLPEKFVVKGVVDRFSEEFVETRRKALDKFLKRIADHPVLSFN 106 (116)
T ss_pred --------------------------------CcccCCCCCcccccccccCCCHHHHHHHHHHHHHHHHHHHcCcccccC
Confidence 125788999964 23589999999999999999998876655
Q ss_pred HHHHhhhC
Q psy7542 681 NQVLAFLG 688 (762)
Q Consensus 681 ~~~~~~~~ 688 (762)
..+..||-
T Consensus 107 ~~~~~FLt 114 (116)
T cd07283 107 EHFNVFLT 114 (116)
T ss_pred cHHHHhhc
Confidence 78888874
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32 |
| >KOG4288|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.9e-09 Score=107.64 Aligned_cols=221 Identities=17% Similarity=0.151 Sum_probs=153.7
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
-...++.|+.||.|++++..-... +..|-.|.|+...+ ++ ......+.++.||...
T Consensus 52 ~e~tlvlggnpfsgs~vlk~A~~v--v~svgilsen~~k~--------~l--------------~sw~~~vswh~gnsfs 107 (283)
T KOG4288|consen 52 VEWTLVLGGNPFSGSEVLKNATNV--VHSVGILSENENKQ--------TL--------------SSWPTYVSWHRGNSFS 107 (283)
T ss_pred HHHHhhhcCCCcchHHHHHHHHhh--ceeeeEeecccCcc--------hh--------------hCCCcccchhhccccc
Confidence 346888999999999999998887 55788899876432 11 2345678888898866
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccC
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTY 220 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~ 220 (762)
.++ +.....++..|+-+++.. .+...+.++|-....+..++|.+. ++++|+|+|......
T Consensus 108 sn~------~k~~l~g~t~v~e~~ggf---gn~~~m~~ing~ani~a~kaa~~~-gv~~fvyISa~d~~~---------- 167 (283)
T KOG4288|consen 108 SNP------NKLKLSGPTFVYEMMGGF---GNIILMDRINGTANINAVKAAAKA-GVPRFVYISAHDFGL---------- 167 (283)
T ss_pred cCc------chhhhcCCcccHHHhcCc---cchHHHHHhccHhhHHHHHHHHHc-CCceEEEEEhhhcCC----------
Confidence 552 455567788888777643 233457778888888889999987 999999999873211
Q ss_pred CCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCC
Q psy7542 221 PPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNI 300 (762)
Q Consensus 221 ~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~ 300 (762)
.|. .|.+|-.+|+.||.-+.... ++.-+|+|||.|||... +.| .
T Consensus 168 -~~~---------------------------i~rGY~~gKR~AE~Ell~~~--~~rgiilRPGFiyg~R~--v~g----~ 211 (283)
T KOG4288|consen 168 -PPL---------------------------IPRGYIEGKREAEAELLKKF--RFRGIILRPGFIYGTRN--VGG----I 211 (283)
T ss_pred -CCc---------------------------cchhhhccchHHHHHHHHhc--CCCceeeccceeecccc--cCc----c
Confidence 111 13689999999999887654 58899999999999942 221 1
Q ss_pred CCchH----HHHHHhcCC---eEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHH
Q psy7542 301 NGPTG----LLIGAGKGI---IRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIE 373 (762)
Q Consensus 301 ~gp~~----li~~~~~G~---l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~ 373 (762)
..|.. .+....++. +..++.-+...+..|+|++||.+.+.++.++.-. ..+++.|+.+
T Consensus 212 ~~pL~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve~VA~aal~ai~dp~f~---------------Gvv~i~eI~~ 276 (283)
T KOG4288|consen 212 KSPLHTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVESVALAALKAIEDPDFK---------------GVVTIEEIKK 276 (283)
T ss_pred cccHHhhhhhHHHHHHhhhchhhcCcccccccCCCcCHHHHHHHHHHhccCCCcC---------------ceeeHHHHHH
Confidence 12211 122222332 2234445567788999999999999998876541 2467777666
Q ss_pred HHH
Q psy7542 374 NGK 376 (762)
Q Consensus 374 ~i~ 376 (762)
...
T Consensus 277 ~a~ 279 (283)
T KOG4288|consen 277 AAH 279 (283)
T ss_pred HHH
Confidence 544
|
|
| >cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18 | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-09 Score=102.57 Aligned_cols=91 Identities=19% Similarity=0.242 Sum_probs=74.3
Q ss_pred cCCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhhhccc
Q psy7542 531 ECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQWLGLN 610 (762)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (762)
+..+.|++|.|... ...|.|.+|||||..||. ++.+.+..
T Consensus 15 ~G~~~Yv~Y~I~~~--~~~~~V~RRYsDF~~L~~-----------------------------~L~~~~p~--------- 54 (127)
T cd07286 15 KGMKSYISYKLVPS--HTGLQVHRRYKHFDWLYA-----------------------------RLAEKFPV--------- 54 (127)
T ss_pred CCCcCEEEEEEEEe--cCceEEECCCcHHHHHHH-----------------------------HHHHHCCC---------
Confidence 34578999999864 345999999999999998 55544421
Q ss_pred ccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-CCCChhHHHHHHHHHHHHHHHHHhcCCCh--HHHHhhh
Q psy7542 611 NVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-RSNQPKVLDERRHLLEIYLKEMFKFGPSR--NQVLAFL 687 (762)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 687 (762)
...|++|+|++ .+.+++++++||.+||.||+.+...+.-+ ..+..||
T Consensus 55 ------------------------------~~IPpLP~K~~~g~f~~~FIe~Rr~~Lq~FL~ria~hp~L~~s~~~~~FL 104 (127)
T cd07286 55 ------------------------------ISVPHIPEKQATGRFEEDFISKRRKGLIWWMDHMCSHPVLARCDAFQHFL 104 (127)
T ss_pred ------------------------------cEeCCCcCCCcCCCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHHh
Confidence 25799999986 67899999999999999999999887666 8999999
Q ss_pred CCCC
Q psy7542 688 GVNS 691 (762)
Q Consensus 688 ~~~~ 691 (762)
...+
T Consensus 105 ~~~~ 108 (127)
T cd07286 105 TCPS 108 (127)
T ss_pred cCCc
Confidence 8763
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki |
| >KOG1203|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.2e-09 Score=115.24 Aligned_cols=235 Identities=15% Similarity=0.134 Sum_probs=139.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.+..+|||+||||-+|+.+++.|+++ +..|++++|..... ++++. + .........+..|.
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkr--gf~vra~VRd~~~a------~~~~~--~----------~~~d~~~~~v~~~~ 136 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKR--GFSVRALVRDEQKA------EDLLG--V----------FFVDLGLQNVEADV 136 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHC--CCeeeeeccChhhh------hhhhc--c----------cccccccceeeecc
Confidence 46689999999999999999999999 68899999976432 22211 0 11223455555555
Q ss_pred CCCCCCCCHHHHHhhcC----CccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcc
Q psy7542 139 AVPDLGISAEDRQMLSE----TIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKV 214 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~----~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~ 214 (762)
..+. +....+.+ .+.+++-|++...-.++...-..+...|+++++++|+.+ ++++||++|++.+.-...+
T Consensus 137 ~~~~-----d~~~~~~~~~~~~~~~v~~~~ggrp~~ed~~~p~~VD~~g~knlvdA~~~a-Gvk~~vlv~si~~~~~~~~ 210 (411)
T KOG1203|consen 137 VTAI-----DILKKLVEAVPKGVVIVIKGAGGRPEEEDIVTPEKVDYEGTKNLVDACKKA-GVKRVVLVGSIGGTKFNQP 210 (411)
T ss_pred cccc-----chhhhhhhhccccceeEEecccCCCCcccCCCcceecHHHHHHHHHHHHHh-CCceEEEEEeecCcccCCC
Confidence 5432 12333333 344666666654332222233467889999999999998 9999999998865432210
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLP 294 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~p 294 (762)
...... --.+-.+|..+|+.+.+. |++.+|+||+...-.. +
T Consensus 211 ---------~~~~~~-----------------------~~~~~~~k~~~e~~~~~S---gl~ytiIR~g~~~~~~----~ 251 (411)
T KOG1203|consen 211 ---------PNILLL-----------------------NGLVLKAKLKAEKFLQDS---GLPYTIIRPGGLEQDT----G 251 (411)
T ss_pred ---------chhhhh-----------------------hhhhhHHHHhHHHHHHhc---CCCcEEEeccccccCC----C
Confidence 000000 024557888999988855 9999999998432211 1
Q ss_pred CCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHH
Q psy7542 295 GWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIE 373 (762)
Q Consensus 295 GWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~ 373 (762)
| ..+.. ........-+ +...-.|+-.++|+.++.++...... ...+..++.....|-++.+.+.
T Consensus 252 ~-----~~~~~-----~~~~~~~~~~--~~~~~~i~r~~vael~~~all~~~~~---~~k~~~~v~~~~gpg~~~~~l~ 315 (411)
T KOG1203|consen 252 G-----QREVV-----VDDEKELLTV--DGGAYSISRLDVAELVAKALLNEAAT---FKKVVELVLKPEGPGRPYKVLL 315 (411)
T ss_pred C-----cceec-----ccCccccccc--cccceeeehhhHHHHHHHHHhhhhhc---cceeEEeecCCCCCCccHHHHH
Confidence 1 00000 0001011111 11113678889999999988877663 2245555554444555544433
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.3e-09 Score=112.85 Aligned_cols=193 Identities=16% Similarity=0.089 Sum_probs=110.2
Q ss_pred EEECCCChhHHHHHHHHHHcCCC-cEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCCC
Q psy7542 65 FITGASGFVGKVLLEKILRTCEN-VKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDL 143 (762)
Q Consensus 65 LVTGATGFLG~~LvekLL~~gp~-v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~L 143 (762)
+|||||+.||.+++++|++. + .+|++..|... +.+++.. .+ .....++.++.+|+++.+
T Consensus 1 lITGas~GIG~aia~~l~~~--G~~~V~~~~r~~~------~~~~~~~-----~l------~~~~~~~~~~~~Dl~d~~- 60 (308)
T PLN00015 1 IITGASSGLGLATAKALAET--GKWHVVMACRDFL------KAERAAK-----SA------GMPKDSYTVMHLDLASLD- 60 (308)
T ss_pred CEeCCCChHHHHHHHHHHHC--CCCEEEEEeCCHH------HHHHHHH-----Hh------cCCCCeEEEEEecCCCHH-
Confidence 59999999999999999998 6 68888888532 2222111 00 111246788999999866
Q ss_pred CCCHHHHHhhc-------CCccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc---CC--ccEEEEE
Q psy7542 144 GISAEDRQMLS-------ETIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM---IH--LQLFVYV 203 (762)
Q Consensus 144 GLs~~~l~~l~-------~~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~---~~--lk~fV~v 203 (762)
+++.++ ..+|++||+||.... .+.++..+++|+.|+..+++.+... .+ ..++|++
T Consensus 61 -----~v~~~~~~~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~v 135 (308)
T PLN00015 61 -----SVRQFVDNFRRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIV 135 (308)
T ss_pred -----HHHHHHHHHHhcCCCCCEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 343332 358999999997421 1346678999999988887665431 12 3689999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHH-HHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH-----cCCCE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKN-ELELLKQELLQDFPNGYAYTKCLCEGVVTEYME-----AGMPC 277 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e-~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~-----~glpv 277 (762)
||..+..... .+..++ ..+...+....+..++. ........ .......|+.||+..+...+..+. .|+.+
T Consensus 136 sS~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v 211 (308)
T PLN00015 136 GSITGNTNTL--AGNVPP-KANLGDLRGLAGGLNGLNSSAMIDGG-EFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITF 211 (308)
T ss_pred eccccccccc--cccCCC-ccchhhhhhhhcccCCccchhhcccc-CCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEE
Confidence 9986542110 000000 00000000000000000 00000000 000124799999986666554443 27899
Q ss_pred EEEeeeeec
Q psy7542 278 MILRPSIII 286 (762)
Q Consensus 278 ~IvRPs~V~ 286 (762)
+.+.||.|.
T Consensus 212 ~~v~PG~v~ 220 (308)
T PLN00015 212 ASLYPGCIA 220 (308)
T ss_pred EEecCCccc
Confidence 999999884
|
|
| >cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7 | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.2e-09 Score=99.85 Aligned_cols=89 Identities=16% Similarity=0.317 Sum_probs=69.9
Q ss_pred CCCCeEEEEEEEEEc-----CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhh
Q psy7542 532 CEKPYYVYVIHVRMF-----QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQW 606 (762)
Q Consensus 532 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
..++|++|.|+.+.. ...|.|.+|||||..||+ ++.+...
T Consensus 14 ~~~~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~-----------------------------~L~~~~p------ 58 (116)
T cd07284 14 AIETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKG-----------------------------RLEEAHP------ 58 (116)
T ss_pred CCcCeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHH-----------------------------HHHHHCC------
Confidence 347899999999864 347899999999999998 4443331
Q ss_pred hcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC-----CCChhHHHHHHHHHHHHHHHHHhcCCCh-
Q psy7542 607 LGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR-----SNQPKVLDERRHLLEIYLKEMFKFGPSR- 680 (762)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 680 (762)
| .-.|..|+|.+. ..+++++|+||++||.||+.+.....-+
T Consensus 59 ----------~-----------------------~~iPplP~K~~~~~~~~~~~~~fie~Rr~~Le~FL~ri~~hp~L~~ 105 (116)
T cd07284 59 ----------T-----------------------LIIPPLPEKFVMKGMVERFNEDFIETRRKALHKFLNRIADHPTLTF 105 (116)
T ss_pred ----------C-----------------------ceeCCCCCcchhhhccccCCHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 1 147889998742 2579999999999999999998876655
Q ss_pred -HHHHhhhC
Q psy7542 681 -NQVLAFLG 688 (762)
Q Consensus 681 -~~~~~~~~ 688 (762)
..+..||.
T Consensus 106 s~~~~~FL~ 114 (116)
T cd07284 106 NEDFKIFLT 114 (116)
T ss_pred ChHHHHhhc
Confidence 78888874
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30, |
| >KOG1208|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.3e-09 Score=112.98 Aligned_cols=179 Identities=16% Similarity=0.169 Sum_probs=123.0
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC-CCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK-KNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~-~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
.+.|++++|||||..||...+++|.++ +.+|++..|.. .+..+.+++++ +....++.++.+
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~~--Ga~Vv~~~R~~~~~~~~~~~i~~----------------~~~~~~i~~~~l 93 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELALR--GAHVVLACRNEERGEEAKEQIQK----------------GKANQKIRVIQL 93 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHHHHh----------------cCCCCceEEEEC
Confidence 357899999999999999999999999 68999999985 22222222222 233478899999
Q ss_pred ecCCCCCCCCHHHHHhh-------cCCccEEEEcccccCc----c-ccHHHHHHHhHHHHHHHHHH----HHHcCCccEE
Q psy7542 137 DVAVPDLGISAEDRQML-------SETIHIVYHIAATVRF----D-DYMQTYVFLNTRGTRDMLNL----SKQMIHLQLF 200 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l-------~~~vDiViH~AA~v~f----~-~~l~~~~~~NV~GT~~LLel----A~~~~~lk~f 200 (762)
|+++.. .+.+. ....|+.|++||.... . +.++..+.+|..|...|.++ .+.+.. .|+
T Consensus 94 DLssl~------SV~~fa~~~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~-~RI 166 (314)
T KOG1208|consen 94 DLSSLK------SVRKFAEEFKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAP-SRI 166 (314)
T ss_pred CCCCHH------HHHHHHHHHHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCC-CCE
Confidence 999865 34433 3357999999998642 2 45778899999996666554 454422 799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhh--cCCCchhHhhhHHHHHHHHHHHHc---CC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELL--QDFPNGYAYTKCLCEGVVTEYMEA---GM 275 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~--~~~pn~Y~~SK~~aE~lv~~~~~~---gl 275 (762)
|++||... ......+ .+.+... ......|+.||........+.+++ |+
T Consensus 167 V~vsS~~~-~~~~~~~--------------------------~l~~~~~~~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V 219 (314)
T KOG1208|consen 167 VNVSSILG-GGKIDLK--------------------------DLSGEKAKLYSSDAAYALSKLANVLLANELAKRLKKGV 219 (314)
T ss_pred EEEcCccc-cCccchh--------------------------hccchhccCccchhHHHHhHHHHHHHHHHHHHHhhcCc
Confidence 99999854 1110000 0000000 001125999999888888887774 78
Q ss_pred CEEEEeeeeeccC
Q psy7542 276 PCMILRPSIIIPI 288 (762)
Q Consensus 276 pv~IvRPs~V~G~ 288 (762)
.+..+-||.|.++
T Consensus 220 ~~~~~hPG~v~t~ 232 (314)
T KOG1208|consen 220 TTYSVHPGVVKTT 232 (314)
T ss_pred eEEEECCCccccc
Confidence 8999999988766
|
|
| >cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9 | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.4e-09 Score=99.41 Aligned_cols=90 Identities=17% Similarity=0.235 Sum_probs=73.6
Q ss_pred CCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhhhccccc
Q psy7542 533 EKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQWLGLNNV 612 (762)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (762)
.+.|++|.|+... ..+.|.+|||||..||. ++.++++.
T Consensus 17 ~~~Yv~Y~I~~~~--~~~~V~RRYsDF~~L~~-----------------------------~L~~~~~~----------- 54 (126)
T cd07285 17 LKSYIEYQLTPTN--TNRSVNHRYKHFDWLYE-----------------------------RLLVKFGL----------- 54 (126)
T ss_pred CcCeEEEEEEecc--CCeEeeCCccHHHHHHH-----------------------------HHHHhcCC-----------
Confidence 4789999988763 46899999999999998 45444311
Q ss_pred ccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-CCCChhHHHHHHHHHHHHHHHHHhcCCCh--HHHHhhhCC
Q psy7542 613 LWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-RSNQPKVLDERRHLLEIYLKEMFKFGPSR--NQVLAFLGV 689 (762)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 689 (762)
.+..|.+|+|++ .+.+++++++||++||.||+.+...+-.+ ..|..||..
T Consensus 55 ---------------------------~i~vPplP~K~~~g~f~~~FIe~Rr~~Le~FL~ri~~hP~L~~~~~l~~FL~~ 107 (126)
T cd07285 55 ---------------------------AIPIPSLPDKQVTGRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNF 107 (126)
T ss_pred ---------------------------CcccCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHcCcCcCCCcHHHHHhCC
Confidence 125899999986 67899999999999999999999886655 889999988
Q ss_pred CC
Q psy7542 690 NS 691 (762)
Q Consensus 690 ~~ 691 (762)
.+
T Consensus 108 ~~ 109 (126)
T cd07285 108 RD 109 (126)
T ss_pred CC
Confidence 64
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T |
| >KOG1200|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.7e-08 Score=97.45 Aligned_cols=223 Identities=14% Similarity=0.096 Sum_probs=142.0
Q ss_pred hhhccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEE
Q psy7542 55 ISATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPI 134 (762)
Q Consensus 55 i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V 134 (762)
..+....+.++||||+..||+++...|.+. +.+|.+..+.... +++-...+ +.. ..-...
T Consensus 8 ~~~r~~sk~~~vtGg~sGIGrAia~~la~~--Garv~v~dl~~~~--A~ata~~L---------------~g~-~~h~aF 67 (256)
T KOG1200|consen 8 VVQRLMSKVAAVTGGSSGIGRAIAQLLAKK--GARVAVADLDSAA--AEATAGDL---------------GGY-GDHSAF 67 (256)
T ss_pred HHHHHhcceeEEecCCchHHHHHHHHHHhc--CcEEEEeecchhh--HHHHHhhc---------------CCC-Ccccee
Confidence 344456788999999999999999999998 7777777765543 22222221 111 244567
Q ss_pred EeecCCCCCCCCHHHHHh-------hcCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-----C
Q psy7542 135 NGDVAVPDLGISAEDRQM-------LSETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-----I 195 (762)
Q Consensus 135 ~GDl~~~~LGLs~~~l~~-------l~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-----~ 195 (762)
.+|+++++ +.+. -+..++++++||+..+. .+.|++.+.+|+.|+..+.+++.+. .
T Consensus 68 ~~DVS~a~------~v~~~l~e~~k~~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~ 141 (256)
T KOG1200|consen 68 SCDVSKAH------DVQNTLEEMEKSLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQ 141 (256)
T ss_pred eeccCcHH------HHHHHHHHHHHhcCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcC
Confidence 89999876 3433 23468999999998763 3678889999999999988887653 1
Q ss_pred CccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhH----HHHHHHHHHH
Q psy7542 196 HLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKC----LCEGVVTEYM 271 (762)
Q Consensus 196 ~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~----~aE~lv~~~~ 271 (762)
+.-++|.+||+-+--.... ...|+.||. ......++.+
T Consensus 142 ~~~sIiNvsSIVGkiGN~G--------------------------------------QtnYAAsK~GvIgftktaArEla 183 (256)
T KOG1200|consen 142 QGLSIINVSSIVGKIGNFG--------------------------------------QTNYAASKGGVIGFTKTAARELA 183 (256)
T ss_pred CCceEEeehhhhccccccc--------------------------------------chhhhhhcCceeeeeHHHHHHHh
Confidence 2238999999844221110 034555544 1222233334
Q ss_pred HcCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCC
Q psy7542 272 EAGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGN 351 (762)
Q Consensus 272 ~~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~ 351 (762)
++++++.++-||.|-.+..+. -|..+...+....+..- +--.+++|+.++.++..... -.
T Consensus 184 ~knIrvN~VlPGFI~tpMT~~---------mp~~v~~ki~~~iPmgr---------~G~~EevA~~V~fLAS~~ss--Yi 243 (256)
T KOG1200|consen 184 RKNIRVNVVLPGFIATPMTEA---------MPPKVLDKILGMIPMGR---------LGEAEEVANLVLFLASDASS--YI 243 (256)
T ss_pred hcCceEeEeccccccChhhhh---------cCHHHHHHHHccCCccc---------cCCHHHHHHHHHHHhccccc--cc
Confidence 448999999999997775442 23345555554443322 33457899998888844332 11
Q ss_pred CceEEEecCC
Q psy7542 352 TMRVINLTAN 361 (762)
Q Consensus 352 ~~~iyNi~s~ 361 (762)
.+..+.++++
T Consensus 244 TG~t~evtGG 253 (256)
T KOG1200|consen 244 TGTTLEVTGG 253 (256)
T ss_pred cceeEEEecc
Confidence 3556666554
|
|
| >KOG0725|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.8e-08 Score=104.22 Aligned_cols=178 Identities=19% Similarity=0.174 Sum_probs=122.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.||+++||||+..||+.++++|.+. +.+|++..|... ++++..+. +... .....++..+.+|+
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~--Ga~v~i~~r~~~------~~~~~~~~-----~~~~---~~~~~~~~~~~~Dv 69 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKA--GAKVVITGRSEE------RLEETAQE-----LGGL---GYTGGKVLAIVCDV 69 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHHH-----HHhc---CCCCCeeEEEECcC
Confidence 58999999999999999999999998 788899988653 22221110 0000 11246789999999
Q ss_pred CCCC--CCCCHHHHHhhcCCccEEEEcccccCcc--------ccHHHHHHHhHHH-HHHHHHHHHHc---CCccEEEEEe
Q psy7542 139 AVPD--LGISAEDRQMLSETIHIVYHIAATVRFD--------DYMQTYVFLNTRG-TRDMLNLSKQM---IHLQLFVYVS 204 (762)
Q Consensus 139 ~~~~--LGLs~~~l~~l~~~vDiViH~AA~v~f~--------~~l~~~~~~NV~G-T~~LLelA~~~---~~lk~fV~vS 204 (762)
+++. -.+-.....+...++|+++++|+..... +.++..+++|+.| +..+...|..+ .+-..++++|
T Consensus 70 ~~~~~~~~l~~~~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~s 149 (270)
T KOG0725|consen 70 SKEVDVEKLVEFAVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNIS 149 (270)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEe
Confidence 9764 0011112222234689999999986532 4567789999995 66666666543 2345788888
Q ss_pred CCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEEE
Q psy7542 205 TAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMIL 280 (762)
Q Consensus 205 Say~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~Iv 280 (762)
|..+..... ..+..|+.||+..+++.+..+.. |+++..+
T Consensus 150 s~~~~~~~~-------------------------------------~~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v 192 (270)
T KOG0725|consen 150 SVAGVGPGP-------------------------------------GSGVAYGVSKAALLQLTRSLAKELAKHGIRVNSV 192 (270)
T ss_pred ccccccCCC-------------------------------------CCcccchhHHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 875432211 00137999999999998887763 8999999
Q ss_pred eeeeeccCC
Q psy7542 281 RPSIIIPIW 289 (762)
Q Consensus 281 RPs~V~G~~ 289 (762)
=||.|..+.
T Consensus 193 ~PG~i~T~~ 201 (270)
T KOG0725|consen 193 SPGLVKTSL 201 (270)
T ss_pred ecCcEeCCc
Confidence 999887765
|
|
| >KOG4169|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-08 Score=103.87 Aligned_cols=221 Identities=17% Similarity=0.126 Sum_probs=139.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
++||++++|||.|.||..+.++|+.. ++ .+.++.|-.. ..+...|++ .....++.++.+|
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~k--gik~~~i~~~~En-~~a~akL~a----------------i~p~~~v~F~~~D 63 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEK--GIKVLVIDDSEEN-PEAIAKLQA----------------INPSVSVIFIKCD 63 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHc--CchheeehhhhhC-HHHHHHHhc----------------cCCCceEEEEEec
Confidence 46999999999999999999999999 88 4444555433 222223322 2234689999999
Q ss_pred cCCCCCCCCHHHHHhhc-------CCccEEEEcccccCccccHHHHHHHhHHHHHH----HHHHHHHcC--CccEEEEEe
Q psy7542 138 VAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRFDDYMQTYVFLNTRGTRD----MLNLSKQMI--HLQLFVYVS 204 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~----LLelA~~~~--~lk~fV~vS 204 (762)
+++.. ++++.+ ..+|++|+.|+..+ +.+++..+.+|+.|..+ .|..-.+-. .-.-+|.+|
T Consensus 64 Vt~~~------~~~~~f~ki~~~fg~iDIlINgAGi~~-dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNms 136 (261)
T KOG4169|consen 64 VTNRG------DLEAAFDKILATFGTIDILINGAGILD-DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMS 136 (261)
T ss_pred cccHH------HHHHHHHHHHHHhCceEEEEccccccc-chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEec
Confidence 99854 444443 35799999999865 66788999999877555 444443321 234689999
Q ss_pred CCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHH------HHHcCCCEE
Q psy7542 205 TAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTE------YMEAGMPCM 278 (762)
Q Consensus 205 Say~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~------~~~~glpv~ 278 (762)
|.++-.+ .|.. ..|+.||+-.=...+. +.+.|+.+.
T Consensus 137 Sv~GL~P----------~p~~----------------------------pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~ 178 (261)
T KOG4169|consen 137 SVAGLDP----------MPVF----------------------------PVYAASKAGVVGFTRSLADLAYYQRSGVRFN 178 (261)
T ss_pred cccccCc----------cccc----------------------------hhhhhcccceeeeehhhhhhhhHhhcCEEEE
Confidence 9987432 2222 2577777733222222 222399999
Q ss_pred EEeeeeeccCCCCCC---CCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 279 ILRPSIIIPIWKDPL---PGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 279 IvRPs~V~G~~~eP~---pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
.+.||.+-....+.+ .+|.+-. ..+..... ...--+..++++.++.+++.+.. +.+
T Consensus 179 avCPG~t~t~l~~~~~~~~~~~e~~----~~~~~~l~------------~~~~q~~~~~a~~~v~aiE~~~N-----Gai 237 (261)
T KOG4169|consen 179 AVCPGFTRTDLAENIDASGGYLEYS----DSIKEALE------------RAPKQSPACCAINIVNAIEYPKN-----GAI 237 (261)
T ss_pred EECCCcchHHHHHHHHhcCCccccc----HHHHHHHH------------HcccCCHHHHHHHHHHHHhhccC-----CcE
Confidence 999997644322221 2222211 11111111 11234566789999999998554 789
Q ss_pred EEecCCCCC
Q psy7542 356 INLTANKDF 364 (762)
Q Consensus 356 yNi~s~~~~ 364 (762)
|-+..+..+
T Consensus 238 w~v~~g~l~ 246 (261)
T KOG4169|consen 238 WKVDSGSLE 246 (261)
T ss_pred EEEecCcEE
Confidence 999887433
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.4e-08 Score=129.83 Aligned_cols=179 Identities=13% Similarity=0.063 Sum_probs=120.4
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcc--------hHHHHHHHh-------------------
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKN--------SRERLEEIF------------------- 110 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~--------~~eRl~~ll------------------- 110 (762)
+-+|++||||||+|.||..++++|++++ +.+|+++.|+..... .+..++...
T Consensus 1994 l~~g~vvLVTGGarGIG~aiA~~LA~~~-ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~ 2072 (2582)
T TIGR02813 1994 LNSDDVFLVTGGAKGVTFECALELAKQC-QAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDAL 2072 (2582)
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHhc-CCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhc
Confidence 4578999999999999999999999883 568999999731100 001111100
Q ss_pred -----cCh-hHHHHHhhhhcccccCCeEEEEeecCCCCCCCCHHHHHhhcC------CccEEEEcccccCc-------cc
Q psy7542 111 -----QSP-LYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSE------TIHIVYHIAATVRF-------DD 171 (762)
Q Consensus 111 -----~~~-~f~~l~~~~~~~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~------~vDiViH~AA~v~f-------~~ 171 (762)
... +-..+. +. .....++.++.+|++|.. +++.+++ .+|+|||+||.... .+
T Consensus 2073 ~~~~~~~~ei~~~la-~l--~~~G~~v~y~~~DVtD~~------av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e 2143 (2582)
T TIGR02813 2073 VRPVLSSLEIAQALA-AF--KAAGASAEYASADVTNSV------SVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLE 2143 (2582)
T ss_pred ccccchhHHHHHHHH-HH--HhcCCcEEEEEccCCCHH------HHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHH
Confidence 000 000000 00 112357889999999975 3443332 48999999997532 24
Q ss_pred cHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcC
Q psy7542 172 YMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQD 251 (762)
Q Consensus 172 ~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~ 251 (762)
.++..+++|+.|+.++++++... ..++||++||+.+.....
T Consensus 2144 ~f~~v~~~nv~G~~~Ll~al~~~-~~~~IV~~SSvag~~G~~-------------------------------------- 2184 (2582)
T TIGR02813 2144 EFNAVYGTKVDGLLSLLAALNAE-NIKLLALFSSAAGFYGNT-------------------------------------- 2184 (2582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEechhhcCCCC--------------------------------------
Confidence 57778999999999999998775 557899999985532211
Q ss_pred CCchhHhhhHHHHHHHHHHHHc--CCCEEEEeeeee
Q psy7542 252 FPNGYAYTKCLCEGVVTEYMEA--GMPCMILRPSII 285 (762)
Q Consensus 252 ~pn~Y~~SK~~aE~lv~~~~~~--glpv~IvRPs~V 285 (762)
....|+.+|...+.+....+.. ++++..+.||.+
T Consensus 2185 gqs~YaaAkaaL~~la~~la~~~~~irV~sI~wG~w 2220 (2582)
T TIGR02813 2185 GQSDYAMSNDILNKAALQLKALNPSAKVMSFNWGPW 2220 (2582)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCee
Confidence 0146999999888888776664 577788887754
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1611|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.8e-07 Score=95.01 Aligned_cols=215 Identities=16% Similarity=0.185 Sum_probs=128.5
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
..++||||||+..||--|+++|++. +++++++-.|....+ +.+.++.. ...++++++++.|++
T Consensus 2 spksv~ItGaNRGIGlgLVk~llk~-~~i~~iiat~r~~e~-a~~~l~~k---------------~~~d~rvHii~Ldvt 64 (249)
T KOG1611|consen 2 SPKSVFITGANRGIGLGLVKELLKD-KGIEVIIATARDPEK-AATELALK---------------SKSDSRVHIIQLDVT 64 (249)
T ss_pred CCccEEEeccCcchhHHHHHHHhcC-CCcEEEEEecCChHH-hhHHHHHh---------------hccCCceEEEEEecc
Confidence 4567999999999999999999988 788544444432221 11222111 224689999999999
Q ss_pred CCC-CCCCHHHHHhh--cCCccEEEEcccccC-c-------cccHHHHHHHhHHHHHHHHHHH----HHcC---------
Q psy7542 140 VPD-LGISAEDRQML--SETIHIVYHIAATVR-F-------DDYMQTYVFLNTRGTRDMLNLS----KQMI--------- 195 (762)
Q Consensus 140 ~~~-LGLs~~~l~~l--~~~vDiViH~AA~v~-f-------~~~l~~~~~~NV~GT~~LLelA----~~~~--------- 195 (762)
..+ +.=..++++++ .+++|+.+++||... + ...+-..+++|+.|+..+.+.+ ++..
T Consensus 65 ~deS~~~~~~~V~~iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s 144 (249)
T KOG1611|consen 65 CDESIDNFVQEVEKIVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLS 144 (249)
T ss_pred cHHHHHHHHHHHHhhcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCccc
Confidence 865 11112233344 345799999999753 1 1235568899999876654433 3321
Q ss_pred -CccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-
Q psy7542 196 -HLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA- 273 (762)
Q Consensus 196 -~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~- 273 (762)
....+|++||..+.... ..+.+. ..|..||++--...+..+-.
T Consensus 145 ~~raaIinisS~~~s~~~------~~~~~~-----------------------------~AYrmSKaAlN~f~ksls~dL 189 (249)
T KOG1611|consen 145 VSRAAIINISSSAGSIGG------FRPGGL-----------------------------SAYRMSKAALNMFAKSLSVDL 189 (249)
T ss_pred ccceeEEEeeccccccCC------CCCcch-----------------------------hhhHhhHHHHHHHHHHhhhhh
Confidence 12378989887443111 011111 57999999988888777653
Q ss_pred -CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCC
Q psy7542 274 -GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNT 352 (762)
Q Consensus 274 -glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~ 352 (762)
+.++.++-.. |||+..-.|- .-..+.|++-+..++....+-... ..
T Consensus 190 ~~~~ilv~sih----------PGwV~TDMgg---------------------~~a~ltveeSts~l~~~i~kL~~~--hn 236 (249)
T KOG1611|consen 190 KDDHILVVSIH----------PGWVQTDMGG---------------------KKAALTVEESTSKLLASINKLKNE--HN 236 (249)
T ss_pred cCCcEEEEEec----------CCeEEcCCCC---------------------CCcccchhhhHHHHHHHHHhcCcc--cC
Confidence 3444333322 4565433221 123456777777787777654432 14
Q ss_pred ceEEEec
Q psy7542 353 MRVINLT 359 (762)
Q Consensus 353 ~~iyNi~ 359 (762)
|..||..
T Consensus 237 G~ffn~d 243 (249)
T KOG1611|consen 237 GGFFNRD 243 (249)
T ss_pred cceEccC
Confidence 5677663
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-07 Score=98.86 Aligned_cols=168 Identities=18% Similarity=0.222 Sum_probs=113.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.+++||||||++.||+.++++|++. +.+|+++.|..... ..+.+.+... . ... ..+.....|+
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~--G~~v~~~~~~~~~~-~~~~~~~~~~---------~---~~~-~~~~~~~~Dv 66 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALARE--GARVVVAARRSEEE-AAEALAAAIK---------E---AGG-GRAAAVAADV 66 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCeEEEEcCCCchh-hHHHHHHHHH---------h---cCC-CcEEEEEecC
Confidence 47899999999999999999999976 77777777765431 1111111110 0 000 3677888999
Q ss_pred CC-CCCCCCHHHHHhh-------cCCccEEEEcccccC----c----cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEE
Q psy7542 139 AV-PDLGISAEDRQML-------SETIHIVYHIAATVR----F----DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVY 202 (762)
Q Consensus 139 ~~-~~LGLs~~~l~~l-------~~~vDiViH~AA~v~----f----~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~ 202 (762)
++ +. +.+.+ ...+|+++|+|+... + .+.++..+++|+.|...+.+++...-.-+++|.
T Consensus 67 s~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~ 140 (251)
T COG1028 67 SDDEE------SVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVN 140 (251)
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEE
Confidence 97 33 33322 334899999999753 2 245677899999999998885543211128999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~ 278 (762)
+||..+. ..... ...|+.||+..+.+....+. .|+.+.
T Consensus 141 isS~~~~-~~~~~-------------------------------------~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~ 182 (251)
T COG1028 141 ISSVAGL-GGPPG-------------------------------------QAAYAASKAALIGLTKALALELAPRGIRVN 182 (251)
T ss_pred ECCchhc-CCCCC-------------------------------------cchHHHHHHHHHHHHHHHHHHHhhhCcEEE
Confidence 9998654 22100 14799999998888777664 278999
Q ss_pred EEeeeeec
Q psy7542 279 ILRPSIII 286 (762)
Q Consensus 279 IvRPs~V~ 286 (762)
.+-||.+-
T Consensus 183 ~v~PG~~~ 190 (251)
T COG1028 183 AVAPGYID 190 (251)
T ss_pred EEEeccCC
Confidence 99999443
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-07 Score=101.39 Aligned_cols=241 Identities=12% Similarity=0.039 Sum_probs=136.6
Q ss_pred cCCCEEEEECC--CChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGA--SGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGA--TGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
++||+++|||| +..||..+++.|.+. |.+|++ .|.... .+++..-.+..-++..+... ..........+.+
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~--Ga~Vv~-~~~~~~---l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAA--GAEILV-GTWVPA---LNIFETSLRRGKFDESRKLP-DGSLMEITKVYPL 79 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHC--CCEEEE-EeCcch---hhHHHHhhhccccchhhhcc-cccccCcCeeeec
Confidence 68999999999 799999999999998 677776 553221 12222111110011110000 0000122457888
Q ss_pred ec--CCCC-C-----------CCCHHHHHhhc-------CCccEEEEcccccC-----c----cccHHHHHHHhHHHHHH
Q psy7542 137 DV--AVPD-L-----------GISAEDRQMLS-------ETIHIVYHIAATVR-----F----DDYMQTYVFLNTRGTRD 186 (762)
Q Consensus 137 Dl--~~~~-L-----------GLs~~~l~~l~-------~~vDiViH~AA~v~-----f----~~~l~~~~~~NV~GT~~ 186 (762)
|+ ++++ + +-+.++++.++ ..+|++||+||... + .+.++..+++|+.|+..
T Consensus 80 D~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~ 159 (303)
T PLN02730 80 DAVFDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVS 159 (303)
T ss_pred ceecCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHH
Confidence 98 3332 0 01112344333 35899999996421 1 24567789999999999
Q ss_pred HHHHHHHc-CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHH
Q psy7542 187 MLNLSKQM-IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEG 265 (762)
Q Consensus 187 LLelA~~~-~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~ 265 (762)
+.+++... ..-.++|++||..+.... |. +...|+.||+..+.
T Consensus 160 l~~~~~p~m~~~G~II~isS~a~~~~~----------p~---------------------------~~~~Y~asKaAl~~ 202 (303)
T PLN02730 160 LLQHFGPIMNPGGASISLTYIASERII----------PG---------------------------YGGGMSSAKAALES 202 (303)
T ss_pred HHHHHHHHHhcCCEEEEEechhhcCCC----------CC---------------------------CchhhHHHHHHHHH
Confidence 98887652 112589999997543211 10 00269999999988
Q ss_pred HHHHHHH-----cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHH
Q psy7542 266 VVTEYME-----AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLL 340 (762)
Q Consensus 266 lv~~~~~-----~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~ 340 (762)
+.+..+. .|+.+..|-||.|-.+.....+ ............. + ...+...+|++++++.
T Consensus 203 l~~~la~El~~~~gIrVn~V~PG~v~T~~~~~~~-------~~~~~~~~~~~~~-------p--l~r~~~peevA~~~~f 266 (303)
T PLN02730 203 DTRVLAFEAGRKYKIRVNTISAGPLGSRAAKAIG-------FIDDMIEYSYANA-------P--LQKELTADEVGNAAAF 266 (303)
T ss_pred HHHHHHHHhCcCCCeEEEEEeeCCccCchhhccc-------ccHHHHHHHHhcC-------C--CCCCcCHHHHHHHHHH
Confidence 8877665 2688888888876544221100 0011111111100 1 1124567999999999
Q ss_pred HhhcccCCCCCCceEEEecCC
Q psy7542 341 STWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 341 a~~~~~~~~~~~~~iyNi~s~ 361 (762)
++...... ..++++.+.++
T Consensus 267 LaS~~a~~--itG~~l~vdGG 285 (303)
T PLN02730 267 LASPLASA--ITGATIYVDNG 285 (303)
T ss_pred HhCccccC--ccCCEEEECCC
Confidence 88643321 13566666554
|
|
| >KOG1610|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-07 Score=99.79 Aligned_cols=158 Identities=19% Similarity=0.242 Sum_probs=115.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
..+|.|||||+-..+|..|+.+|.+. +++|++-.-.+.+ .+-++... ..++...+..|+
T Consensus 27 ~~~k~VlITGCDSGfG~~LA~~L~~~--Gf~V~Agcl~~~g---ae~L~~~~----------------~s~rl~t~~LDV 85 (322)
T KOG1610|consen 27 LSDKAVLITGCDSGFGRLLAKKLDKK--GFRVFAGCLTEEG---AESLRGET----------------KSPRLRTLQLDV 85 (322)
T ss_pred cCCcEEEEecCCcHHHHHHHHHHHhc--CCEEEEEeecCch---HHHHhhhh----------------cCCcceeEeecc
Confidence 46889999999999999999999999 7778877743333 22222211 146788889999
Q ss_pred CCCCCCCCHHHHHhhcC---------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHH----HHHHHHcCCc
Q psy7542 139 AVPDLGISAEDRQMLSE---------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDM----LNLSKQMIHL 197 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~---------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~L----LelA~~~~~l 197 (762)
++++ +++++.+ +.-.|||+||...+ .+.++..+++|+.|+.++ +-+.++++
T Consensus 86 T~~e------si~~a~~~V~~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar-- 157 (322)
T KOG1610|consen 86 TKPE------SVKEAAQWVKKHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR-- 157 (322)
T ss_pred CCHH------HHHHHHHHHHHhcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc--
Confidence 9987 5555433 34689999996543 255778999999997665 44555553
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---- 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---- 273 (762)
.|+|++||..+-... |. -.+|+.||+..|......+..
T Consensus 158 GRvVnvsS~~GR~~~----------p~----------------------------~g~Y~~SK~aVeaf~D~lR~EL~~f 199 (322)
T KOG1610|consen 158 GRVVNVSSVLGRVAL----------PA----------------------------LGPYCVSKFAVEAFSDSLRRELRPF 199 (322)
T ss_pred CeEEEecccccCccC----------cc----------------------------cccchhhHHHHHHHHHHHHHHHHhc
Confidence 599999998663211 11 158999999999888776653
Q ss_pred CCCEEEEeee
Q psy7542 274 GMPCMILRPS 283 (762)
Q Consensus 274 glpv~IvRPs 283 (762)
|+.+.|+-||
T Consensus 200 GV~VsiiePG 209 (322)
T KOG1610|consen 200 GVKVSIIEPG 209 (322)
T ss_pred CcEEEEeccC
Confidence 9999999999
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-07 Score=92.18 Aligned_cols=163 Identities=20% Similarity=0.174 Sum_probs=113.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.|-+||||||+..||..|++++++. |-+|++..|. ++||++..+ ....+....+|+
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~el--gN~VIi~gR~------e~~L~e~~~---------------~~p~~~t~v~Dv 59 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLEL--GNTVIICGRN------EERLAEAKA---------------ENPEIHTEVCDV 59 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHh--CCEEEEecCc------HHHHHHHHh---------------cCcchheeeecc
Confidence 36889999999999999999999998 5677877775 467776532 235677788999
Q ss_pred CCCCCCCCHHHHHhhc----C---CccEEEEcccccC---cc------ccHHHHHHHhHHHHHHHHHHHHHc---CCccE
Q psy7542 139 AVPDLGISAEDRQMLS----E---TIHIVYHIAATVR---FD------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQL 199 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~----~---~vDiViH~AA~v~---f~------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~ 199 (762)
.|.+ .+++++ + ..+++|+|||..+ |. +...+-+.+|..++.+|..+.... +.-..
T Consensus 60 ~d~~------~~~~lvewLkk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~ 133 (245)
T COG3967 60 ADRD------SRRELVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEAT 133 (245)
T ss_pred cchh------hHHHHHHHHHhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCce
Confidence 9876 333333 2 4799999999864 22 223456889999999887776542 12357
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH---c-CC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME---A-GM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~---~-gl 275 (762)
+|.|||.-++.+... . -.|..||+.-...-...+. . ++
T Consensus 134 IInVSSGLafvPm~~-------------------------------------~-PvYcaTKAaiHsyt~aLR~Qlk~t~v 175 (245)
T COG3967 134 IINVSSGLAFVPMAS-------------------------------------T-PVYCATKAAIHSYTLALREQLKDTSV 175 (245)
T ss_pred EEEeccccccCcccc-------------------------------------c-ccchhhHHHHHHHHHHHHHHhhhcce
Confidence 899999865543220 1 2699999876655544443 2 67
Q ss_pred CEEEEeeeeeccC
Q psy7542 276 PCMILRPSIIIPI 288 (762)
Q Consensus 276 pv~IvRPs~V~G~ 288 (762)
.+.=+-|+.|-.+
T Consensus 176 eVIE~~PP~V~t~ 188 (245)
T COG3967 176 EVIELAPPLVDTT 188 (245)
T ss_pred EEEEecCCceecC
Confidence 7777777777554
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=7.9e-07 Score=87.66 Aligned_cols=199 Identities=13% Similarity=0.053 Sum_probs=129.2
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|.|.||||-+|+.|+++.+++ |+.|.+++|.+.... ..+.+.+++.|+.++
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R--GHeVTAivRn~~K~~-------------------------~~~~~~i~q~Difd~ 53 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR--GHEVTAIVRNASKLA-------------------------ARQGVTILQKDIFDL 53 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC--CCeeEEEEeChHhcc-------------------------ccccceeecccccCh
Confidence 68999999999999999999999 677899999864321 125788999999987
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCc---ccCCCcccccc
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAY---CHPKEKVLEEK 218 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay---~~~~~~~i~E~ 218 (762)
. .+...+.+.|+||..-+.... ++. .........|++..+.. ++.|++.|..+. .......++
T Consensus 54 ~------~~a~~l~g~DaVIsA~~~~~~-~~~----~~~~k~~~~li~~l~~a-gv~RllVVGGAGSL~id~g~rLvD-- 119 (211)
T COG2910 54 T------SLASDLAGHDAVISAFGAGAS-DND----ELHSKSIEALIEALKGA-GVPRLLVVGGAGSLEIDEGTRLVD-- 119 (211)
T ss_pred h------hhHhhhcCCceEEEeccCCCC-Chh----HHHHHHHHHHHHHHhhc-CCeeEEEEcCccceEEcCCceeec--
Confidence 7 567888999999976443211 111 11223356677777776 788999988773 333322221
Q ss_pred cCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCC
Q psy7542 219 TYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTD 298 (762)
Q Consensus 219 ~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWid 298 (762)
.|.-|+ .-|..++..+|.+-.-.....+.|+.+-|+..+-|++. .
T Consensus 120 ---~p~fP~--------------------------ey~~~A~~~ae~L~~Lr~~~~l~WTfvSPaa~f~PGer--T---- 164 (211)
T COG2910 120 ---TPDFPA--------------------------EYKPEALAQAEFLDSLRAEKSLDWTFVSPAAFFEPGER--T---- 164 (211)
T ss_pred ---CCCCch--------------------------hHHHHHHHHHHHHHHHhhccCcceEEeCcHHhcCCccc--c----
Confidence 111111 23566777777544333333799999999988766322 1
Q ss_pred CCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 299 NINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 299 n~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
+.+ ..|.-... .+ ..--+.|...|-|-|++.-++++..
T Consensus 165 g~y---------rlggD~ll-~n-~~G~SrIS~aDYAiA~lDe~E~~~h 202 (211)
T COG2910 165 GNY---------RLGGDQLL-VN-AKGESRISYADYAIAVLDELEKPQH 202 (211)
T ss_pred Cce---------EeccceEE-Ec-CCCceeeeHHHHHHHHHHHHhcccc
Confidence 111 11111111 12 1223678889999999999888765
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-07 Score=98.51 Aligned_cols=212 Identities=17% Similarity=0.147 Sum_probs=138.1
Q ss_pred CCC--ChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCCCCC
Q psy7542 68 GAS--GFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLGI 145 (762)
Q Consensus 68 GAT--GFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~LGL 145 (762)
|++ +.||..++++|++. |.+|++..|.... .++.++++. .+. ...++.+|+++++
T Consensus 1 g~~~s~GiG~aia~~l~~~--Ga~V~~~~~~~~~--~~~~~~~l~---------~~~-------~~~~~~~D~~~~~--- 57 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEE--GANVILTDRNEEK--LADALEELA---------KEY-------GAEVIQCDLSDEE--- 57 (241)
T ss_dssp STSSTSHHHHHHHHHHHHT--TEEEEEEESSHHH--HHHHHHHHH---------HHT-------TSEEEESCTTSHH---
T ss_pred CCCCCCChHHHHHHHHHHC--CCEEEEEeCChHH--HHHHHHHHH---------HHc-------CCceEeecCcchH---
Confidence 666 99999999999998 8899999997532 122233322 111 1335999999865
Q ss_pred CHHHHHhh-------c-CCccEEEEcccccCc-----------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEEeC
Q psy7542 146 SAEDRQML-------S-ETIHIVYHIAATVRF-----------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYVST 205 (762)
Q Consensus 146 s~~~l~~l-------~-~~vDiViH~AA~v~f-----------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~vSS 205 (762)
+++.+ . ..+|++||+|+.... .+.+...+++|+.+...+++.+... ..-.++|++||
T Consensus 58 ---~v~~~~~~~~~~~~g~iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss 134 (241)
T PF13561_consen 58 ---SVEALFDEAVERFGGRIDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISS 134 (241)
T ss_dssp ---HHHHHHHHHHHHHCSSESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---HHHHHHHHHHhhcCCCeEEEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccc
Confidence 45544 4 578999999987653 1346678999999999999888542 22268999998
Q ss_pred CcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH-----cCCCEEEE
Q psy7542 206 AYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME-----AGMPCMIL 280 (762)
Q Consensus 206 ay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~-----~glpv~Iv 280 (762)
..+..... ....|+.+|+..+.+++..+. .|+++..|
T Consensus 135 ~~~~~~~~--------------------------------------~~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V 176 (241)
T PF13561_consen 135 IAAQRPMP--------------------------------------GYSAYSASKAALEGLTRSLAKELAPKKGIRVNAV 176 (241)
T ss_dssp GGGTSBST--------------------------------------TTHHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEE
T ss_pred hhhcccCc--------------------------------------cchhhHHHHHHHHHHHHHHHHHhccccCeeeeee
Confidence 86532210 014799999999888877654 37999999
Q ss_pred eeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 281 RPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 281 RPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
.||.|..+... .......+....... .....+...+|+|++++.++...... -.+++..+.+
T Consensus 177 ~pG~i~t~~~~-------~~~~~~~~~~~~~~~---------~pl~r~~~~~evA~~v~fL~s~~a~~--itG~~i~vDG 238 (241)
T PF13561_consen 177 SPGPIETPMTE-------RIPGNEEFLEELKKR---------IPLGRLGTPEEVANAVLFLASDAASY--ITGQVIPVDG 238 (241)
T ss_dssp EESSBSSHHHH-------HHHTHHHHHHHHHHH---------STTSSHBEHHHHHHHHHHHHSGGGTT--GTSEEEEEST
T ss_pred cccceeccchh-------ccccccchhhhhhhh---------hccCCCcCHHHHHHHHHHHhCccccC--ccCCeEEECC
Confidence 99977543110 000011111111111 11123568899999999888765331 1477888776
Q ss_pred C
Q psy7542 361 N 361 (762)
Q Consensus 361 ~ 361 (762)
|
T Consensus 239 G 239 (241)
T PF13561_consen 239 G 239 (241)
T ss_dssp T
T ss_pred C
Confidence 5
|
... |
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-07 Score=99.04 Aligned_cols=217 Identities=10% Similarity=-0.005 Sum_probs=126.1
Q ss_pred HHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCCCCCCHHHHHhhcC-
Q psy7542 77 LLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSE- 155 (762)
Q Consensus 77 LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~- 155 (762)
++++|++. |.+|++++|..... + ...++.+|+++.+ +++.+++
T Consensus 1 ~a~~l~~~--G~~Vv~~~r~~~~~---~-------------------------~~~~~~~Dl~~~~------~v~~~~~~ 44 (241)
T PRK12428 1 TARLLRFL--GARVIGVDRREPGM---T-------------------------LDGFIQADLGDPA------SIDAAVAA 44 (241)
T ss_pred ChHHHHhC--CCEEEEEeCCcchh---h-------------------------hhHhhcccCCCHH------HHHHHHHH
Confidence 46788887 77889999865321 0 1134678998765 4555443
Q ss_pred ---CccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEEeCCcccCCCc--ccccccCCCCCChhhH
Q psy7542 156 ---TIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYVSTAYCHPKEK--VLEEKTYPPPVSPHNV 229 (762)
Q Consensus 156 ---~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~vSSay~~~~~~--~i~E~~~~~p~~p~~~ 229 (762)
++|+|||+||... ..+++..+++|+.|+..+++++... ..-.++|++||..+..... +..|......
T Consensus 45 ~~~~iD~li~nAG~~~-~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~------ 117 (241)
T PRK12428 45 LPGRIDALFNIAGVPG-TAPVELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATA------ 117 (241)
T ss_pred hcCCCeEEEECCCCCC-CCCHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccc------
Confidence 5899999999764 3567889999999999999998753 2236899999986543211 1111000000
Q ss_pred HHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHH-H---c-CCCEEEEeeeeeccCCCCCCCCCCCCCCCch
Q psy7542 230 IEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYM-E---A-GMPCMILRPSIIIPIWKDPLPGWTDNINGPT 304 (762)
Q Consensus 230 ~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~-~---~-glpv~IvRPs~V~G~~~eP~pGWidn~~gp~ 304 (762)
.++ +.+.-.. .......+.|+.||+..+.+.+..+ . . |+.+++++||.|.++...... +. ...
T Consensus 118 -----~~~-~~~~~~~-~~~~~~~~~Y~~sK~a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~~---~~-~~~- 185 (241)
T PRK12428 118 -----SFD-EGAAWLA-AHPVALATGYQLSKEALILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDFR---SM-LGQ- 185 (241)
T ss_pred -----hHH-HHHHhhh-ccCCCcccHHHHHHHHHHHHHHHHHHHhhhccCeEEEEeecCCccCcccccch---hh-hhh-
Confidence 000 0000000 0011122689999999999887776 2 2 899999999988776422100 00 000
Q ss_pred HHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 305 GLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 305 ~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
... .... .....+...+|+|++++.++...... ..+++..+.++
T Consensus 186 ~~~---~~~~--------~~~~~~~~pe~va~~~~~l~s~~~~~--~~G~~i~vdgg 229 (241)
T PRK12428 186 ERV---DSDA--------KRMGRPATADEQAAVLVFLCSDAARW--INGVNLPVDGG 229 (241)
T ss_pred Hhh---hhcc--------cccCCCCCHHHHHHHHHHHcChhhcC--ccCcEEEecCc
Confidence 000 0000 01123567899999999887543221 13455555443
|
|
| >KOG2527|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.2e-08 Score=90.57 Aligned_cols=100 Identities=25% Similarity=0.379 Sum_probs=76.2
Q ss_pred ccccceeeecC-CCCeEEEEEEEEEcCeEE-----EEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHH
Q psy7542 522 ISVSGYRLIEC-EKPYYVYVIHVRMFQQHY-----IVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQK 595 (762)
Q Consensus 522 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (762)
|.|.+.+..+. ...|+-|.|-++.+...+ +|.+|||||.-+|. ++
T Consensus 20 I~V~nPrt~~~~~~~ytdYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~-----------------------------~L 70 (144)
T KOG2527|consen 20 IDVINPRTHGDGKNRYTDYEIRCRTNSPSFKKKESCVRRRYSDFEWLRK-----------------------------RL 70 (144)
T ss_pred EEeeCCcccccccccceeEEEEEecCchhhhhhhHHHHHHHHHHHHHHH-----------------------------HH
Confidence 44555555333 367999999998776554 68899999999999 77
Q ss_pred hhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCCh--hHHHHHHHHHHHHHHHH
Q psy7542 596 KRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQP--KVLDERRHLLEIYLKEM 673 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 673 (762)
+++.+ ++..|.+|.|....+.| +++||||++||.||+.+
T Consensus 71 er~s~---------------------------------------kvvvP~LPgK~~~~~~~fre~IEeRrqgLe~fl~kV 111 (144)
T KOG2527|consen 71 ERESG---------------------------------------KVVVPELPGKALFRQLPFREFIEERRQGLEVFLRKV 111 (144)
T ss_pred HHhcc---------------------------------------cccCCCCCcHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 77763 34899999999877766 99999999999999998
Q ss_pred HhcCC--ChHHHHhhhCC
Q psy7542 674 FKFGP--SRNQVLAFLGV 689 (762)
Q Consensus 674 ~~~~~--~~~~~~~~~~~ 689 (762)
....- +...+--||.=
T Consensus 112 aghpL~q~~~~Lh~Flq~ 129 (144)
T KOG2527|consen 112 AGHPLLQNERCLHLFLQS 129 (144)
T ss_pred hCchhhhccHHHHHHHHh
Confidence 75432 23667777753
|
|
| >KOG1207|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-07 Score=92.19 Aligned_cols=207 Identities=19% Similarity=0.214 Sum_probs=139.6
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++|+.|++|||.-.||+.++..|.+. +.+|+++.|.. +.|..+.+ +. ..-|+++.+|
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La~a--GA~ViAvaR~~------a~L~sLV~---------e~-----p~~I~Pi~~D 61 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLAKA--GAQVIAVARNE------ANLLSLVK---------ET-----PSLIIPIVGD 61 (245)
T ss_pred cccceEEEeecccccccHHHHHHHHhc--CCEEEEEecCH------HHHHHHHh---------hC-----CcceeeeEec
Confidence 568999999999999999999999998 78899999964 33443321 11 2348999999
Q ss_pred cCCCCCCCCHHHHHhhcCC---ccEEEEcccccC---c----cccHHHHHHHhHHHHHHHHHHHHHc----CCccEEEEE
Q psy7542 138 VAVPDLGISAEDRQMLSET---IHIVYHIAATVR---F----DDYMQTYVFLNTRGTRDMLNLSKQM----IHLQLFVYV 203 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~---vDiViH~AA~v~---f----~~~l~~~~~~NV~GT~~LLelA~~~----~~lk~fV~v 203 (762)
+++.+ ...+++.. +|..+++||..- | .++++..+++|+++..++.+...+. .....+|.+
T Consensus 62 ls~we------a~~~~l~~v~pidgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNv 135 (245)
T KOG1207|consen 62 LSAWE------ALFKLLVPVFPIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNV 135 (245)
T ss_pred ccHHH------HHHHhhcccCchhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEe
Confidence 98744 45555543 699999998642 2 2445567889999988887774331 122469999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~I 279 (762)
||..+... ++. -+.|..||++-+.+.+..+-. .+++..
T Consensus 136 SSqas~R~---~~n-----------------------------------HtvYcatKaALDmlTk~lAlELGp~kIRVNs 177 (245)
T KOG1207|consen 136 SSQASIRP---LDN-----------------------------------HTVYCATKAALDMLTKCLALELGPQKIRVNS 177 (245)
T ss_pred cchhcccc---cCC-----------------------------------ceEEeecHHHHHHHHHHHHHhhCcceeEeec
Confidence 99754321 111 157999999988887766553 688999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
+-|..|...... ..|.|-...-. ++. .++ .--|.-||.|++|++.++.+..
T Consensus 178 VNPTVVmT~MG~--dnWSDP~K~k~-mL~--------riP-----l~rFaEV~eVVnA~lfLLSd~s 228 (245)
T KOG1207|consen 178 VNPTVVMTDMGR--DNWSDPDKKKK-MLD--------RIP-----LKRFAEVDEVVNAVLFLLSDNS 228 (245)
T ss_pred cCCeEEEecccc--cccCCchhccc-hhh--------hCc-----hhhhhHHHHHHhhheeeeecCc
Confidence 999988765422 24554322111 111 111 2347789999999887766543
|
|
| >KOG3019|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.6e-07 Score=90.98 Aligned_cols=158 Identities=15% Similarity=0.004 Sum_probs=101.8
Q ss_pred HHHhHHHHHHHHHHHHHcCCc-cEEEEEeCCccc--CCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCC
Q psy7542 177 VFLNTRGTRDMLNLSKQMIHL-QLFVYVSTAYCH--PKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFP 253 (762)
Q Consensus 177 ~~~NV~GT~~LLelA~~~~~l-k~fV~vSSay~~--~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~p 253 (762)
...-+..|..|.++...++.. +.+|.+|....+ ......+|+......|. +.
T Consensus 101 ~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~~~~qgfd~---~s---------------------- 155 (315)
T KOG3019|consen 101 KGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEKIVHQGFDI---LS---------------------- 155 (315)
T ss_pred hcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEeccccccccccccccCChHH---HH----------------------
Confidence 333445588899999888755 488999887433 33334455432221110 00
Q ss_pred chhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHH
Q psy7542 254 NGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDV 333 (762)
Q Consensus 254 n~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDd 333 (762)
--.+|| |.......+ ..+++++|.|.|.|.... ..+..-+...++.|. ..|++.+...|||+||
T Consensus 156 --rL~l~W--E~aA~~~~~-~~r~~~iR~GvVlG~gGG--------a~~~M~lpF~~g~GG---PlGsG~Q~fpWIHv~D 219 (315)
T KOG3019|consen 156 --RLCLEW--EGAALKANK-DVRVALIRIGVVLGKGGG--------ALAMMILPFQMGAGG---PLGSGQQWFPWIHVDD 219 (315)
T ss_pred --HHHHHH--HHHhhccCc-ceeEEEEEEeEEEecCCc--------chhhhhhhhhhccCC---cCCCCCeeeeeeehHH
Confidence 000122 122222222 789999999999998532 111111222333333 3578999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHhhccC
Q psy7542 334 LVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIARNK 382 (762)
Q Consensus 334 vA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~~G~~ 382 (762)
+++.|..+++++.. ..+.|-+.+ ++.+..|+++.+.+.+++.
T Consensus 220 L~~li~~ale~~~v-----~GViNgvAP--~~~~n~Ef~q~lg~aL~Rp 261 (315)
T KOG3019|consen 220 LVNLIYEALENPSV-----KGVINGVAP--NPVRNGEFCQQLGSALSRP 261 (315)
T ss_pred HHHHHHHHHhcCCC-----CceecccCC--CccchHHHHHHHHHHhCCC
Confidence 99999999998765 479999998 9999999999999998443
|
|
| >KOG1210|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.5e-06 Score=90.73 Aligned_cols=205 Identities=18% Similarity=0.176 Sum_probs=127.4
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
+.|+||||+-.+|+.++..+.++ +..|.++.|+.+.. .++.+. ++. .....+|.+..+|+.+-
T Consensus 34 ~hi~itggS~glgl~la~e~~~~--ga~Vti~ar~~~kl------~~a~~~--l~l-------~~~~~~v~~~S~d~~~Y 96 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKRE--GADVTITARSGKKL------LEAKAE--LEL-------LTQVEDVSYKSVDVIDY 96 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHc--cCceEEEeccHHHH------HHHHhh--hhh-------hhccceeeEeccccccH
Confidence 58999999999999999999998 55678888976432 221110 000 11123477888999665
Q ss_pred CCCCCHHHHHhhc-------CCccEEEEcccccC---cc----ccHHHHHHHhHHHHHHHHHHHHH-cCC---ccEEEEE
Q psy7542 142 DLGISAEDRQMLS-------ETIHIVYHIAATVR---FD----DYMQTYVFLNTRGTRDMLNLSKQ-MIH---LQLFVYV 203 (762)
Q Consensus 142 ~LGLs~~~l~~l~-------~~vDiViH~AA~v~---f~----~~l~~~~~~NV~GT~~LLelA~~-~~~---lk~fV~v 203 (762)
+ ....++ --+|.+||||+..- |. +..+..+++|..||.++++++.. ++. ..+++.+
T Consensus 97 ~------~v~~~~~~l~~~~~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~v 170 (331)
T KOG1210|consen 97 D------SVSKVIEELRDLEGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILV 170 (331)
T ss_pred H------HHHHHHhhhhhccCCcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEe
Confidence 4 233332 24799999999641 21 33556899999999999887754 332 3389999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhH----HHHHHHHHHHHcCCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKC----LCEGVVTEYMEAGMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~----~aE~lv~~~~~~glpv~I 279 (762)
||..+.-.-. .-++|..+|. +||.+-++..+.|+.++.
T Consensus 171 sS~~a~~~i~--------------------------------------GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~ 212 (331)
T KOG1210|consen 171 SSQLAMLGIY--------------------------------------GYSAYSPSKFALRGLAEALRQELIKYGVHVTL 212 (331)
T ss_pred hhhhhhcCcc--------------------------------------cccccccHHHHHHHHHHHHHHHHhhcceEEEE
Confidence 9874322110 0145666665 556655555555888888
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF 345 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~ 345 (762)
+-|+.+-.++-+ .+|...|. ...+. +...+.++.+++|.+++.-+.+.
T Consensus 213 ~~P~~~~tpGfE-----~En~tkP~----------~t~ii---~g~ss~~~~e~~a~~~~~~~~rg 260 (331)
T KOG1210|consen 213 YYPPDTLTPGFE-----RENKTKPE----------ETKII---EGGSSVIKCEEMAKAIVKGMKRG 260 (331)
T ss_pred EcCCCCCCCccc-----cccccCch----------heeee---cCCCCCcCHHHHHHHHHhHHhhc
Confidence 888866554322 11222221 11111 22345599999999988876654
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.3e-06 Score=90.00 Aligned_cols=242 Identities=10% Similarity=0.011 Sum_probs=130.9
Q ss_pred cCCCEEEEECCC--ChhHHHHHHHHHHcCCCcEEEEEeCCCC------CcchHHHHHHH--hcChh---HHHHHhhhhcc
Q psy7542 59 LEHKNIFITGAS--GFVGKVLLEKILRTCENVKIYILLRPKK------NKNSRERLEEI--FQSPL---YEALKKEQSES 125 (762)
Q Consensus 59 ~~gk~VLVTGAT--GFLG~~LvekLL~~gp~v~V~~LvR~~~------~~~~~eRl~~l--l~~~~---f~~l~~~~~~~ 125 (762)
++||+++||||+ ..||+++++.|.+. |.+|++..|... ..+. ++.... ..... +.+.... .
T Consensus 6 ~~gk~alITGa~~~~GIG~a~A~~la~~--Ga~Vvv~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~---~ 79 (299)
T PRK06300 6 LTGKIAFIAGIGDDQGYGWGIAKALAEA--GATILVGTWVPIYKIFSQSLEL-GKFDASRKLSNGSLLTFAKIYPM---D 79 (299)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHC--CCEEEEEeccchhhhhhhhccc-ccccccccccccchhhhhhHHHh---h
Confidence 479999999995 89999999999999 777777654310 0000 000000 00000 0000000 0
Q ss_pred cccCCeEEEEeecCCCCC--CCCHHHHHhh-------cCCccEEEEcccccC-----c----cccHHHHHHHhHHHHHHH
Q psy7542 126 AIFEKVIPINGDVAVPDL--GISAEDRQML-------SETIHIVYHIAATVR-----F----DDYMQTYVFLNTRGTRDM 187 (762)
Q Consensus 126 ~~~~kV~~V~GDl~~~~L--GLs~~~l~~l-------~~~vDiViH~AA~v~-----f----~~~l~~~~~~NV~GT~~L 187 (762)
......+-+..|+.+... -+++++++.+ ...+|++||+||... + .+.++..+++|+.|+.++
T Consensus 80 ~d~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l 159 (299)
T PRK06300 80 ASFDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSL 159 (299)
T ss_pred hhcCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHH
Confidence 000122233333333210 0122223332 245899999997531 2 135667899999999999
Q ss_pred HHHHHHc-CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHH
Q psy7542 188 LNLSKQM-IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGV 266 (762)
Q Consensus 188 LelA~~~-~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~l 266 (762)
.+++... ..-.++|.+||..+.... |. ....|+.||+..+.+
T Consensus 160 ~~a~~p~m~~~G~ii~iss~~~~~~~----------p~---------------------------~~~~Y~asKaAl~~l 202 (299)
T PRK06300 160 LSHFGPIMNPGGSTISLTYLASMRAV----------PG---------------------------YGGGMSSAKAALESD 202 (299)
T ss_pred HHHHHHHhhcCCeEEEEeehhhcCcC----------CC---------------------------ccHHHHHHHHHHHHH
Confidence 9888652 222478899886542211 00 002699999999888
Q ss_pred HHHHHH----c-CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHH
Q psy7542 267 VTEYME----A-GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLS 341 (762)
Q Consensus 267 v~~~~~----~-glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a 341 (762)
.+..+. . |+.+..|.||.|-.+... ....+......... .. ........++++++++.+
T Consensus 203 t~~la~el~~~~gIrVn~V~PG~v~T~~~~-------~~~~~~~~~~~~~~-~~--------p~~r~~~peevA~~v~~L 266 (299)
T PRK06300 203 TKVLAWEAGRRWGIRVNTISAGPLASRAGK-------AIGFIERMVDYYQD-WA--------PLPEPMEAEQVGAAAAFL 266 (299)
T ss_pred HHHHHHHhCCCCCeEEEEEEeCCccChhhh-------cccccHHHHHHHHh-cC--------CCCCCcCHHHHHHHHHHH
Confidence 876654 2 789999999877543211 00001111111111 00 012345779999999888
Q ss_pred hhcccCCCCCCceEEEecCC
Q psy7542 342 TWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 342 ~~~~~~~~~~~~~iyNi~s~ 361 (762)
+..... ...++++.+.++
T Consensus 267 ~s~~~~--~itG~~i~vdGG 284 (299)
T PRK06300 267 VSPLAS--AITGETLYVDHG 284 (299)
T ss_pred hCcccc--CCCCCEEEECCC
Confidence 764332 114667777554
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-06 Score=94.73 Aligned_cols=181 Identities=12% Similarity=-0.021 Sum_probs=118.7
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.++|.||||+|.+|+.++..|...+ -. ++.++++......+ .++. +..... ...+++
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~-~~~el~L~Di~~~~g~a----~Dl~---------------~~~~~~--~i~~~~ 75 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNP-LVSELHLYDIANTPGVA----ADVS---------------HINTPA--QVRGFL 75 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC-CCCEEEEEecCCCCeeE----chhh---------------hCCcCc--eEEEEe
Confidence 4689999999999999999998762 23 78888876511100 0110 001111 223433
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEK 218 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~ 218 (762)
+.+ ++...++++|+|||+||..+. ..+..+.+..|+..++++.+.+++. +..++|.++|-=+......+..
T Consensus 76 ~~~------d~~~~l~~aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~-~p~aivivvSNPvD~~~~i~t~- 147 (323)
T PLN00106 76 GDD------QLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKH-CPNALVNIISNPVNSTVPIAAE- 147 (323)
T ss_pred CCC------CHHHHcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCCccccHHHHHH-
Confidence 322 467788999999999998765 4567789999999999999999998 6889999998633211000000
Q ss_pred cCCCCCChhhHHHHHHhhhHHHHHHHHHhhhc-CCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCC-CCCCC
Q psy7542 219 TYPPPVSPHNVIEKAELLSKNELELLKQELLQ-DFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWK-DPLPG 295 (762)
Q Consensus 219 ~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~-~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~-eP~pG 295 (762)
...+..+ +.-..|+.++.-.+++-...++. |++..-++--+|.+.+. .-+|-
T Consensus 148 -------------------------~~~~~s~~p~~~viG~~~LDs~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~ 202 (323)
T PLN00106 148 -------------------------VLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKGLDPADVDVPVVGGHAGITILPL 202 (323)
T ss_pred -------------------------HHHHcCCCCcceEEEEecchHHHHHHHHHHHhCCChhheEEEEEEeCCCccEeee
Confidence 0001111 11157888898899988888887 99988887666655533 44555
Q ss_pred C
Q psy7542 296 W 296 (762)
Q Consensus 296 W 296 (762)
|
T Consensus 203 ~ 203 (323)
T PLN00106 203 L 203 (323)
T ss_pred h
Confidence 5
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.6e-06 Score=91.05 Aligned_cols=122 Identities=12% Similarity=-0.007 Sum_probs=87.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.+.++|.||||+|.+|+.++..|...+-..++.++++.+....+ .++. +... .....+.
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a----~Dl~---------------~~~~--~~~v~~~ 64 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVA----ADLS---------------HIDT--PAKVTGY 64 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccc----cchh---------------hcCc--CceEEEe
Confidence 46779999999999999999988866212278888883211111 0110 0111 2233455
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYC 208 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~ 208 (762)
+++. ++.+.++++|+||++|+...- ..+..+.+..|+.+++++++..++. +++++|.++|.-+
T Consensus 65 td~~------~~~~~l~gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~-~~~~iviv~SNPv 128 (321)
T PTZ00325 65 ADGE------LWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASS-APKAIVGIVSNPV 128 (321)
T ss_pred cCCC------chHHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCcH
Confidence 5544 445677899999999998654 3566788999999999999999998 8899999999744
|
|
| >cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=83.57 Aligned_cols=102 Identities=14% Similarity=0.120 Sum_probs=74.9
Q ss_pred CCCccccccceeeecCCCCeEEEEEEEE----EcC-eEE-EEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhh
Q psy7542 517 PKENCISVSGYRLIECEKPYYVYVIHVR----MFQ-QHY-IVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQ 590 (762)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (762)
.....|.|++.+-.... |.+|.+.+. +|. ..| .|.||||||..||+
T Consensus 27 ~~~l~i~Vtd~ek~G~~--~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~-------------------------- 78 (140)
T cd06891 27 KYFLRVRVTGIERNKSK--DPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFK-------------------------- 78 (140)
T ss_pred CceEEEEEeCceecCCC--CeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHH--------------------------
Confidence 44566888887766544 455555543 333 346 79999999999998
Q ss_pred hHHHHhhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC--CCCChhHHHHHHHHHHH
Q psy7542 591 NRRQKKRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI--RSNQPKVLDERRHLLEI 668 (762)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 668 (762)
++..++.. .-.|..|+|.+ ..+..+++++||.+||.
T Consensus 79 ---~L~~~~~~---------------------------------------~iVPplP~k~~~~~~~~~E~~~~rr~~Lqr 116 (140)
T cd06891 79 ---YLNGANPE---------------------------------------TFVPALPLPSTSYGSNNEEDARKLKANLQR 116 (140)
T ss_pred ---HHHHHCCC---------------------------------------cEeCCCCCccccCCCCCHHHHHHHHHHHHH
Confidence 44444422 27899999986 56788999999999999
Q ss_pred HHHHHHhcCCCh--HHHHhhhC
Q psy7542 669 YLKEMFKFGPSR--NQVLAFLG 688 (762)
Q Consensus 669 ~~~~~~~~~~~~--~~~~~~~~ 688 (762)
||+.+...+--+ ..+..||.
T Consensus 117 fL~RV~~hP~L~~d~~l~~FLE 138 (140)
T cd06891 117 WFNRVCSDPILIRDEELRFFIE 138 (140)
T ss_pred HHHHHhCChhhccCHHHHHHhc
Confidence 999998766444 88888884
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur |
| >KOG3784|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.9e-07 Score=95.81 Aligned_cols=94 Identities=32% Similarity=0.470 Sum_probs=71.9
Q ss_pred cccccceeeecCCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhch
Q psy7542 521 CISVSGYRLIECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCK 600 (762)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (762)
.|+.+.+.. ...-|++|+||+ ++.+ .+..|||+++++|. ++|+.+.
T Consensus 4 ~v~~t~~~~--~~~~ytaynih~--nG~~-~~~~r~s~~~~l~~-----------------------------~lr~~~~ 49 (407)
T KOG3784|consen 4 SVPDTSYLT--SLERYTAYNIHI--NGRQ-HGSVRYSQLVELHE-----------------------------QLKKHFY 49 (407)
T ss_pred Cccchhhcc--Ccccccceeeee--ccee-EEEEehHHHHhHHH-----------------------------HHHHHhh
Confidence 344444443 556799998887 4444 44679999999998 7777773
Q ss_pred hhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHHhcCCCh
Q psy7542 601 YFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGPSR 680 (762)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (762)
. ...|.||||+.....|+-+|+||.+||.|||++-.+.-..
T Consensus 50 ~---------------------------------------~~~p~~p~k~~f~L~~~~~~~rr~~leqylqa~~q~~~l~ 90 (407)
T KOG3784|consen 50 D---------------------------------------YCLPQFPPKKLFKLTPQQLDSRRRGLEQYLQAVCQDPVLA 90 (407)
T ss_pred c---------------------------------------ccCCCCCcccccCCChhhhHHHHHHHHHHHHHHhcCcccc
Confidence 2 2789999999999999999999999999999998776554
Q ss_pred --HHHHhhh
Q psy7542 681 --NQVLAFL 687 (762)
Q Consensus 681 --~~~~~~~ 687 (762)
.-|-.||
T Consensus 91 ~s~~~~~fL 99 (407)
T KOG3784|consen 91 RSELVQKFL 99 (407)
T ss_pred chhhhhHHH
Confidence 4444444
|
|
| >KOG1209|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-06 Score=87.04 Aligned_cols=120 Identities=20% Similarity=0.243 Sum_probs=85.6
Q ss_pred CCCEEEEECC-CChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGA-SGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGA-TGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
..+.|||||+ .|.||-+|+.++.+. |+.|++..|... ++.++. ...++.....|+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~--G~~V~AtaR~~e------~M~~L~----------------~~~gl~~~kLDV 61 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARN--GYLVYATARRLE------PMAQLA----------------IQFGLKPYKLDV 61 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhC--CeEEEEEccccc------hHhhHH----------------HhhCCeeEEecc
Confidence 4578999875 699999999999998 889999999753 233321 124688999999
Q ss_pred CCCCCCCCHHHHHhhcC--------CccEEEEcccccC----c---cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE--------TIHIVYHIAATVR----F---DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~--------~vDiViH~AA~v~----f---~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV 201 (762)
++++ ++.+... ..|+.+++||..- . .+..+..+++|+.|..++.++...+ +.-..+|
T Consensus 62 ~~~~------~V~~v~~evr~~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIV 135 (289)
T KOG1209|consen 62 SKPE------EVVTVSGEVRANPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIV 135 (289)
T ss_pred CChH------HHHHHHHHHhhCCCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEE
Confidence 9987 3333222 4699999999642 1 2345668999999988777766532 1224789
Q ss_pred EEeCCccc
Q psy7542 202 YVSTAYCH 209 (762)
Q Consensus 202 ~vSSay~~ 209 (762)
++.|..+.
T Consensus 136 nvgSl~~~ 143 (289)
T KOG1209|consen 136 NVGSLAGV 143 (289)
T ss_pred EecceeEE
Confidence 99998554
|
|
| >cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1 | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.2e-06 Score=76.84 Aligned_cols=97 Identities=19% Similarity=0.253 Sum_probs=71.9
Q ss_pred CCCeEEEEEEEE-EcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhhhcccc
Q psy7542 533 EKPYYVYVIHVR-MFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQWLGLNN 611 (762)
Q Consensus 533 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (762)
...+++|.|.|. -.+..+.|.|||+||..+|. ++++.+..
T Consensus 16 ~~~h~~Y~i~V~wsdgs~~~iyR~y~eF~~lh~-----------------------------~L~~~FP~---------- 56 (121)
T cd06889 16 KRRHKTYMFSVLWSDGSELFVYRSLEEFRKLHK-----------------------------QLKEKFPV---------- 56 (121)
T ss_pred ccceeEEEEEEEEcCCcEEEEEEEHHHHHHHHH-----------------------------HHHHHCCc----------
Confidence 456889999996 46678999999999999999 66665522
Q ss_pred cccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCC---hhHHHHHHHHHHHHHHHHHhcCCCh---HHHHh
Q psy7542 612 VLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQ---PKVLDERRHLLEIYLKEMFKFGPSR---NQVLA 685 (762)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 685 (762)
.-|. ..+..-..|.||.|.+-.++ -..-+.|+..|+.|++++++..+.. ..|+.
T Consensus 57 -------------------EaG~-~~~~~riLP~lP~~~~~~~~~~~~~~a~~R~~~L~~Y~~~Ll~lp~~Is~~~~V~~ 116 (121)
T cd06889 57 -------------------EAGL-LRSSDRVLPKFKDAPSLGSLKGSTSRSLARLKLLETYCQELLRLDEKVSRSPEVIQ 116 (121)
T ss_pred -------------------ccCC-CCCCCcccCCCCCCcccCCcccccchHHHHHHHHHHHHHHHHcCCcceecCHHHHH
Confidence 1111 01112248999999875554 2357899999999999999988865 88888
Q ss_pred hhC
Q psy7542 686 FLG 688 (762)
Q Consensus 686 ~~~ 688 (762)
|+.
T Consensus 117 FF~ 119 (121)
T cd06889 117 FFA 119 (121)
T ss_pred hcC
Confidence 875
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain |
| >KOG1014|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.2e-05 Score=85.58 Aligned_cols=172 Identities=17% Similarity=0.145 Sum_probs=115.9
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
|+-..|||||..||+..+++|.++ |.+|+++.|.. ++|+...+ |- +....-.+.++..|.++
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkr--G~nvvLIsRt~------~KL~~v~k---------EI-~~~~~vev~~i~~Dft~ 110 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKR--GFNVVLISRTQ------EKLEAVAK---------EI-EEKYKVEVRIIAIDFTK 110 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHc--CCEEEEEeCCH------HHHHHHHH---------HH-HHHhCcEEEEEEEecCC
Confidence 477999999999999999999999 88899999974 44443321 11 01223568889999999
Q ss_pred CCCCCCHHHHHhhcCC--ccEEEEcccccCc-----c----ccHHHHHHHhHHHHHHHHHHHHH-c--CCccEEEEEeCC
Q psy7542 141 PDLGISAEDRQMLSET--IHIVYHIAATVRF-----D----DYMQTYVFLNTRGTRDMLNLSKQ-M--IHLQLFVYVSTA 206 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~--vDiViH~AA~v~f-----~----~~l~~~~~~NV~GT~~LLelA~~-~--~~lk~fV~vSSa 206 (762)
++- .-+.+.+.+.+ +.++|+|+|.... . ..+...+.+|+.++..+.+.... | ++-..+|++||.
T Consensus 111 ~~~--~ye~i~~~l~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ 188 (312)
T KOG1014|consen 111 GDE--VYEKLLEKLAGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSF 188 (312)
T ss_pred Cch--hHHHHHHHhcCCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccc
Confidence 872 22233444443 6799999997641 1 13445677899988777766542 1 234578999998
Q ss_pred cccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHH----HHHHHcCCCEEEEee
Q psy7542 207 YCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVV----TEYMEAGMPCMILRP 282 (762)
Q Consensus 207 y~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv----~~~~~~glpv~IvRP 282 (762)
.+..+. |. -..|+.||+.-+.+- .++...|+.+-.+=|
T Consensus 189 ag~~p~----------p~----------------------------~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p 230 (312)
T KOG1014|consen 189 AGLIPT----------PL----------------------------LSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIP 230 (312)
T ss_pred cccccC----------hh----------------------------HHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeeh
Confidence 653321 11 157999998655544 444444899999999
Q ss_pred eeeccCCC
Q psy7542 283 SIIIPIWK 290 (762)
Q Consensus 283 s~V~G~~~ 290 (762)
..|.+...
T Consensus 231 ~~VaTkm~ 238 (312)
T KOG1014|consen 231 YLVATKMA 238 (312)
T ss_pred hheecccc
Confidence 88876643
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.7e-05 Score=77.46 Aligned_cols=125 Identities=14% Similarity=0.131 Sum_probs=76.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++++||||+|.||..++..|++. +.+|++..|.... .++-.+++ . ....++.++.+|+
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~--G~~V~l~~r~~~~--~~~~~~~l---------~------~~~~~~~~~~~Dl 74 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQ--GAKVIVTDIDQES--GQATVEEI---------T------NLGGEALFVSYDM 74 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHC--CCEEEEEECCHHH--HHHHHHHH---------H------hcCCcEEEEEccC
Confidence 57899999999999999999999998 6788888876421 11111111 1 1124567889999
Q ss_pred CCCCCCCCHHHHHhh-------cCCccEEEEcccccCc----cc-cHHHHHHHhHHHHHHHHHHHHHc----------CC
Q psy7542 139 AVPDLGISAEDRQML-------SETIHIVYHIAATVRF----DD-YMQTYVFLNTRGTRDMLNLSKQM----------IH 196 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l-------~~~vDiViH~AA~v~f----~~-~l~~~~~~NV~GT~~LLelA~~~----------~~ 196 (762)
+++. ++.++ ...+|++||+||.... .+ +......+|+.++......+... ..
T Consensus 75 ~~~~------~v~~~v~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (169)
T PRK06720 75 EKQG------DWQRVISITLNAFSRIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSD 148 (169)
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeec
Confidence 8865 34432 2468999999996542 22 21122244555443333333211 13
Q ss_pred ccEEEEEeCCcc
Q psy7542 197 LQLFVYVSTAYC 208 (762)
Q Consensus 197 lk~fV~vSSay~ 208 (762)
..+|..|||..+
T Consensus 149 ~~~~~~~~~~~~ 160 (169)
T PRK06720 149 LPIFGIIGTKGQ 160 (169)
T ss_pred CceeeEeccccc
Confidence 468888888744
|
|
| >cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2 | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.9e-06 Score=77.20 Aligned_cols=104 Identities=20% Similarity=0.344 Sum_probs=66.8
Q ss_pred EEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhhhcccccccCC
Q psy7542 537 YVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQWLGLNNVLWYP 616 (762)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (762)
+||.|++.-....|.|.|||..|..||.+ .+.-|---. -||..|- .+.|++..+.-
T Consensus 24 ~lYtIeltHG~F~W~IkRryKhF~~LHr~-----L~~~k~~~~-~~P~~~~-~~~r~~~~~~~----------------- 79 (130)
T cd07297 24 TLYTVRLTHGEFTWTVKKKFKHFQELHRD-----LYRHKVMLS-FLPLGRF-AIQHRQQLEGL----------------- 79 (130)
T ss_pred eeEEEEEecCceEEEEEehhhhHHHHHHH-----HHHHHHhhh-cCCchhh-hhhhccccccc-----------------
Confidence 69999999999999999999999999984 000000000 0121111 11111111111
Q ss_pred CCcccccchhhhhccccccccccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHHhcCCCh--HHHHhhhCC
Q psy7542 617 GGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGPSR--NQVLAFLGV 689 (762)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 689 (762)
.-..|++|..- ... ..-+..|+..||.||+.+++..--| ...++||.|
T Consensus 80 -----------------------~~~mP~LP~~~-~~~-~~~~~sr~kqLE~YLn~LL~~~~YRn~~atleFLeV 129 (130)
T cd07297 80 -----------------------TEEMPSLPGTD-REA-SRRTASKPKYLENYLNNLLENSFYRNYHAMMEFLAV 129 (130)
T ss_pred -----------------------cCcCCCCCCCC-chh-hhhhhhHHHHHHHHHHHHhcchhhcCChhheeeeec
Confidence 12578888663 222 4557889999999999999987766 678888876
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor |
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.5e-05 Score=79.82 Aligned_cols=102 Identities=11% Similarity=0.212 Sum_probs=70.8
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+++|||||||+|. ++++|++. +.+|.++.|.+. +.+++.. .. +. ..++.++.+|+.++
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~--G~~V~v~~R~~~------~~~~l~~---------~l--~~-~~~i~~~~~Dv~d~ 59 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEK--GFHVSVIARREV------KLENVKR---------ES--TT-PESITPLPLDYHDD 59 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHC--cCEEEEEECCHH------HHHHHHH---------Hh--hc-CCcEEEEEccCCCH
Confidence 57999999999886 99999998 667788888532 2222211 00 11 24788899999987
Q ss_pred CCCCCHHHHHhhcC-------CccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCcc----EEEEEeCC
Q psy7542 142 DLGISAEDRQMLSE-------TIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQ----LFVYVSTA 206 (762)
Q Consensus 142 ~LGLs~~~l~~l~~-------~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk----~fV~vSSa 206 (762)
+ ++..+++ .+|++|+.+ .+.++.++.++|++. +++ +|+|+=..
T Consensus 60 ~------sv~~~i~~~l~~~g~id~lv~~v---------------h~~~~~~~~~~~~~~-gv~~~~~~~~h~~gs 113 (177)
T PRK08309 60 D------ALKLAIKSTIEKNGPFDLAVAWI---------------HSSAKDALSVVCREL-DGSSETYRLFHVLGS 113 (177)
T ss_pred H------HHHHHHHHHHHHcCCCeEEEEec---------------cccchhhHHHHHHHH-ccCCCCceEEEEeCC
Confidence 6 4544443 356777543 455788999999998 778 89988544
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.6e-06 Score=84.92 Aligned_cols=83 Identities=16% Similarity=0.300 Sum_probs=54.6
Q ss_pred cCCCEEEEECCC----------------ChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhh
Q psy7542 59 LEHKNIFITGAS----------------GFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQ 122 (762)
Q Consensus 59 ~~gk~VLVTGAT----------------GFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~ 122 (762)
++||+||||+|. ||+|++|++.|+++ |.+|+++.+....... .+
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~--Ga~V~li~g~~~~~~~--~~---------------- 60 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISK--GAHVIYLHGYFAEKPN--DI---------------- 60 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHC--CCeEEEEeCCCcCCCc--cc----------------
Confidence 478999999885 99999999999999 5677777764321100 00
Q ss_pred hcccccCCeEEEEeecCCCCCCCCHHHHHhhcC--CccEEEEcccccCcc
Q psy7542 123 SESAIFEKVIPINGDVAVPDLGISAEDRQMLSE--TIHIVYHIAATVRFD 170 (762)
Q Consensus 123 ~~~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~--~vDiViH~AA~v~f~ 170 (762)
+ ...++..+.+|.... +.+.++++ ++|+|||+||..+|.
T Consensus 61 --~-~~~~~~~V~s~~d~~------~~l~~~~~~~~~D~VIH~AAvsD~~ 101 (229)
T PRK09620 61 --N-NQLELHPFEGIIDLQ------DKMKSIITHEKVDAVIMAAAGSDWV 101 (229)
T ss_pred --C-CceeEEEEecHHHHH------HHHHHHhcccCCCEEEECcccccee
Confidence 0 012344566632221 14566664 689999999998765
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.4e-05 Score=83.05 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=70.5
Q ss_pred CEEEEECCCChhHHHHHHHHHHcC-----CCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTC-----ENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~g-----p~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
.+|+||||+|++|++++..|+..+ .+.+|.+++|......+...-.++ .+-..+..+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl------------------~d~~~~~~~ 64 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMEL------------------QDCAFPLLK 64 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeeh------------------hhccccccC
Confidence 469999999999999999998852 123789999864311000000000 000001122
Q ss_pred ecCCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 137 DVAVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
|+... .++.+.++++|+|||+|+..+. .++-.+.++.|+.-.+.+.+..+++
T Consensus 65 ~~~~~------~~~~~~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~ 117 (325)
T cd01336 65 SVVAT------TDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKY 117 (325)
T ss_pred Cceec------CCHHHHhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 33221 2455667899999999998764 3455678999999999998877776
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG1204|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.7e-05 Score=79.44 Aligned_cols=163 Identities=18% Similarity=0.097 Sum_probs=106.6
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.++.|||||++-.||..++..++....+..++...|.... .+.+.+..||..
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~----------------------------~~~L~v~~gd~~ 56 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE----------------------------LEGLKVAYGDDF 56 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc----------------------------ccceEEEecCCc
Confidence 4678999999999999999988887433344444443221 234444444443
Q ss_pred CCCCCCC---H--HHHHhhcC----CccEEEEcccccC-----c-----cccHHHHHHHhHHHHHHHHHHHHHc-CC---
Q psy7542 140 VPDLGIS---A--EDRQMLSE----TIHIVYHIAATVR-----F-----DDYMQTYVFLNTRGTRDMLNLSKQM-IH--- 196 (762)
Q Consensus 140 ~~~LGLs---~--~~l~~l~~----~vDiViH~AA~v~-----f-----~~~l~~~~~~NV~GT~~LLelA~~~-~~--- 196 (762)
...-|.- . +++.++.+ +-|+|||+||... + ...++..+++|+.+...+...+... ++
T Consensus 57 v~~~g~~~e~~~l~al~e~~r~k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~ 136 (253)
T KOG1204|consen 57 VHVVGDITEEQLLGALREAPRKKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPV 136 (253)
T ss_pred ceechHHHHHHHHHHHHhhhhhcCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCc
Confidence 3221111 1 12222222 4699999999864 2 2447779999999998888877542 22
Q ss_pred ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---
Q psy7542 197 LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--- 273 (762)
Q Consensus 197 lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--- 273 (762)
.+-+|++||..+..+-. ....|+.+|++-+++.+..+..
T Consensus 137 ~~~vVnvSS~aav~p~~--------------------------------------~wa~yc~~KaAr~m~f~~lA~EEp~ 178 (253)
T KOG1204|consen 137 NGNVVNVSSLAAVRPFS--------------------------------------SWAAYCSSKAARNMYFMVLASEEPF 178 (253)
T ss_pred cCeEEEecchhhhcccc--------------------------------------HHHHhhhhHHHHHHHHHHHhhcCcc
Confidence 26789999986543211 0157999999999999887763
Q ss_pred CCCEEEEeeeeeccC
Q psy7542 274 GMPCMILRPSIIIPI 288 (762)
Q Consensus 274 glpv~IvRPs~V~G~ 288 (762)
++.+..++||.|=..
T Consensus 179 ~v~vl~~aPGvvDT~ 193 (253)
T KOG1204|consen 179 DVRVLNYAPGVVDTQ 193 (253)
T ss_pred ceeEEEccCCcccch
Confidence 678899999977443
|
|
| >cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.9e-05 Score=68.22 Aligned_cols=81 Identities=21% Similarity=0.347 Sum_probs=62.4
Q ss_pred EEEEEEEE-EcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhhhcccccccC
Q psy7542 537 YVYVIHVR-MFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQWLGLNNVLWY 615 (762)
Q Consensus 537 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (762)
|+|.|.|. -.+..-.|.|+|.||-.+|+ |+|+..
T Consensus 13 ~lY~i~V~~sd~~~t~v~Rs~eeF~eLH~-----------------------------~L~~~F---------------- 47 (101)
T cd06896 13 NLYLVQVTQSCNLVSLTEKSFEQFSELHS-----------------------------QLQKQF---------------- 47 (101)
T ss_pred eEEEEEEEEeCCCcceeeecHHHHHHHHH-----------------------------HHHHHC----------------
Confidence 78999995 45566788999999999999 777776
Q ss_pred CCCcccccchhhhhccccccccccCCCCCCCCCCc-CCCCChhHHHHHHHHHHHHHHHHHhcCCCh---HHHHhhh
Q psy7542 616 PGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKK-IRSNQPKVLDERRHLLEIYLKEMFKFGPSR---NQVLAFL 687 (762)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 687 (762)
|....|.||.+- +.-++ .-++|..+||.|+|++++..+.. ..|+.|+
T Consensus 48 -----------------------P~~~LP~fP~~~~~~~~~--~~~~R~~~L~~Yl~~Ll~~~~eVa~sd~v~sFF 98 (101)
T cd06896 48 -----------------------PSLALPEFPHWWHLPFTD--SDHKRVRDLNHYLEQLLSGSREVANSDCVLSFF 98 (101)
T ss_pred -----------------------ccccccCCCCccccCccc--HHHHHHHHHHHHHHHHHccCHHHhcchHHHHHh
Confidence 344789999883 21111 14679999999999999887765 6777776
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom |
| >KOG1199|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.3e-05 Score=78.03 Aligned_cols=107 Identities=17% Similarity=0.193 Sum_probs=79.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.+|-..+||||...+|+.-+|.|.+. +..|.+++-+.++.... - .+...++.+.+.|+
T Consensus 7 ~kglvalvtggasglg~ataerlakq--gasv~lldlp~skg~~v--a------------------kelg~~~vf~padv 64 (260)
T KOG1199|consen 7 TKGLVALVTGGASGLGKATAERLAKQ--GASVALLDLPQSKGADV--A------------------KELGGKVVFTPADV 64 (260)
T ss_pred hcCeeEEeecCcccccHHHHHHHHhc--CceEEEEeCCcccchHH--H------------------HHhCCceEEecccc
Confidence 37888999999999999999999998 66777887765543211 1 12357899999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccC------c-------cccHHHHHHHhHHHHHHHHHHHHH
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVR------F-------DDYMQTYVFLNTRGTRDMLNLSKQ 193 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~------f-------~~~l~~~~~~NV~GT~~LLelA~~ 193 (762)
+.+. |....+ ..+|..++||+..- + -++++..+++|+.||.|++++...
T Consensus 65 tsek------dv~aala~ak~kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~ag 133 (260)
T KOG1199|consen 65 TSEK------DVRAALAKAKAKFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAG 133 (260)
T ss_pred CcHH------HHHHHHHHHHhhccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhh
Confidence 9754 555443 25799999999741 1 144556788999999999988653
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=9e-05 Score=77.37 Aligned_cols=98 Identities=13% Similarity=0.138 Sum_probs=60.7
Q ss_pred EEE-CCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCCC
Q psy7542 65 FIT-GASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDL 143 (762)
Q Consensus 65 LVT-GATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~L 143 (762)
+|| .+|||+|.+|++.|+++ |.+|+++.|..... +....++.++..+-.+..
T Consensus 19 ~itN~SSG~iG~aLA~~L~~~--G~~V~li~r~~~~~------------------------~~~~~~v~~i~v~s~~~m- 71 (229)
T PRK06732 19 GITNHSTGQLGKIIAETFLAA--GHEVTLVTTKTAVK------------------------PEPHPNLSIIEIENVDDL- 71 (229)
T ss_pred eecCccchHHHHHHHHHHHhC--CCEEEEEECccccc------------------------CCCCCCeEEEEEecHHHH-
Confidence 344 78999999999999998 67888888753210 111235566654332211
Q ss_pred CCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHH
Q psy7542 144 GISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQ 193 (762)
Q Consensus 144 GLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~ 193 (762)
.+.+.+.+.++|+|||+||...+.. ....-..+...+.++.+++++
T Consensus 72 ---~~~l~~~~~~~DivIh~AAvsd~~~-~~~~~~~~~~~~~~v~~~~~~ 117 (229)
T PRK06732 72 ---LETLEPLVKDHDVLIHSMAVSDYTP-VYMTDLEEVSASDNLNEFLTK 117 (229)
T ss_pred ---HHHHHHHhcCCCEEEeCCccCCcee-hhhhhhhhhhhhhhhhhhhcc
Confidence 1234556678999999999876542 222223355556666666654
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00094 Score=74.26 Aligned_cols=85 Identities=16% Similarity=0.159 Sum_probs=55.8
Q ss_pred CCCEEEEECCCChhHHH--HHHHHHHcCCCcEEEEEeCCCCCcc---------hHHHHHHHhcChhHHHHHhhhhccccc
Q psy7542 60 EHKNIFITGASGFVGKV--LLEKILRTCENVKIYILLRPKKNKN---------SRERLEEIFQSPLYEALKKEQSESAIF 128 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~--LvekLL~~gp~v~V~~LvR~~~~~~---------~~eRl~~ll~~~~f~~l~~~~~~~~~~ 128 (762)
.||++|||||++.+|.+ +++.| +. |.+|+++.+...... ..+.+++..+ ...
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al-~~--GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~--------------~~G 102 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAF-GA--GADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAK--------------AAG 102 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHH-Hc--CCeEEEEecCcchhhhcccccccchHHHHHHHHH--------------hcC
Confidence 57999999999999999 88888 76 676777775321110 1111222111 112
Q ss_pred CCeEEEEeecCCCCCCCCHHHHHhh-------cCCccEEEEccccc
Q psy7542 129 EKVIPINGDVAVPDLGISAEDRQML-------SETIHIVYHIAATV 167 (762)
Q Consensus 129 ~kV~~V~GDl~~~~LGLs~~~l~~l-------~~~vDiViH~AA~v 167 (762)
.++..+.+|+++++ +++++ ...+|++||+||..
T Consensus 103 ~~a~~i~~DVss~E------~v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 103 LYAKSINGDAFSDE------IKQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred CceEEEEcCCCCHH------HHHHHHHHHHHhcCCCCEEEECCccC
Confidence 35678899999865 33333 24689999999976
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0001 Score=80.97 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=53.7
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
.+++++|+||||||+||+.++++|+.. .++ +|+++.|.. +|+.++.. + +..+
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~-~gv~~lilv~R~~------~rl~~La~---------e-----------l~~~ 204 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAK-TGVAELLLVARQQ------ERLQELQA---------E-----------LGGG 204 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhh-CCCCEEEEEcCCH------HHHHHHHH---------H-----------hccc
Confidence 468899999999999999999999865 255 888888853 34433211 0 0123
Q ss_pred ecCCCCCCCCHHHHHhhcCCccEEEEcccccCc
Q psy7542 137 DVAVPDLGISAEDRQMLSETIHIVYHIAATVRF 169 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f 169 (762)
|+. ++.+.+.++|+|||+|+....
T Consensus 205 ~i~---------~l~~~l~~aDiVv~~ts~~~~ 228 (340)
T PRK14982 205 KIL---------SLEEALPEADIVVWVASMPKG 228 (340)
T ss_pred cHH---------hHHHHHccCCEEEECCcCCcC
Confidence 332 355677899999999997653
|
|
| >cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00035 Score=66.79 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=28.5
Q ss_pred cCCCCeEEEEEEEEE-----cCeEEEEEeehhhHHhhhh
Q psy7542 531 ECEKPYYVYVIHVRM-----FQQHYIVEKRYSELLSWHS 564 (762)
Q Consensus 531 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 564 (762)
.+++.+..|.|+... .+..+.|.+|||+|.-||.
T Consensus 11 ~~~~~~V~Y~V~TkT~l~~f~~~e~sV~RR~sDF~wL~~ 49 (141)
T cd06892 11 LSERDKVKFTVHTKTTLPTFQKPEFSVTRQHEEFVWLHD 49 (141)
T ss_pred cccCCeEEEEEEeccCCccccCCeeEEEeccHHHHHHHH
Confidence 356789999998862 2567999999999999998
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00089 Score=73.46 Aligned_cols=174 Identities=16% Similarity=0.128 Sum_probs=107.1
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCc-------EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEE
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENV-------KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIP 133 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v-------~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~ 133 (762)
.++|.|+||+|.+|..++..|+.. ++ ++.+++..+....++....++.... .....++.+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~--~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~-----------~~~~~~~~i 68 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASG--EMFGPDQPVILQLLELPQALKALEGVAMELEDCA-----------FPLLAEIVI 68 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc--cccCCCCceEEEEEecCCcccccceeehhhhhcc-----------ccccCceEE
Confidence 468999999999999999999876 33 5888877432211111111111100 001112222
Q ss_pred EEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC
Q psy7542 134 INGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE 212 (762)
Q Consensus 134 V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~ 212 (762)
..+ ++ +.++++|+||-+|+..+- .++-.+.+..|+.-.+.+.+..++......++.+-|-
T Consensus 69 ~~~------------~~-~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN------ 129 (322)
T cd01338 69 TDD------------PN-VAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGN------ 129 (322)
T ss_pred ecC------------cH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecC------
Confidence 211 22 345899999999998653 3455678999999999999988876312344443331
Q ss_pred cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCC--chhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCC
Q psy7542 213 KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFP--NGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIW 289 (762)
Q Consensus 213 ~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~p--n~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~ 289 (762)
|+|. +.....+..+++| ..|+.|+...+++....++. |++...+|..+|+|+.
T Consensus 130 ----------PvD~--------------~t~~~~k~sg~~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeH 185 (322)
T cd01338 130 ----------PCNT--------------NALIAMKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNH 185 (322)
T ss_pred ----------cHHH--------------HHHHHHHHcCCCChHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCC
Confidence 1110 0001111111111 57888999999999999987 9999999999998875
Q ss_pred C
Q psy7542 290 K 290 (762)
Q Consensus 290 ~ 290 (762)
.
T Consensus 186 G 186 (322)
T cd01338 186 S 186 (322)
T ss_pred c
Confidence 3
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG1478|consensus | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0017 Score=67.46 Aligned_cols=186 Identities=16% Similarity=0.159 Sum_probs=115.0
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCC-c--EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCEN-V--KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~-v--~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.|.++|||++..||-.|+.+|++...+ + +|.+..|.-+. +++-...+ +.-. |+...++++|..|
T Consensus 3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~k--ae~vc~~l---------k~f~--p~~~i~~~yvlvD 69 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSK--AEAVCAAL---------KAFH--PKSTIEVTYVLVD 69 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhH--HHHHHHHH---------HHhC--CCceeEEEEEEEe
Confidence 478999999999999999999987333 2 67777776433 22222222 2222 4445678899999
Q ss_pred cCCCCCCC-CHHHHHhhcCCccEEEEcccccCc----------------------------------cccHHHHHHHhHH
Q psy7542 138 VAVPDLGI-SAEDRQMLSETIHIVYHIAATVRF----------------------------------DDYMQTYVFLNTR 182 (762)
Q Consensus 138 l~~~~LGL-s~~~l~~l~~~vDiViH~AA~v~f----------------------------------~~~l~~~~~~NV~ 182 (762)
+++-.--+ ...|+.+-.+..|.|+-+||...+ .+.+...+++||.
T Consensus 70 ~sNm~Sv~~A~~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVF 149 (341)
T KOG1478|consen 70 VSNMQSVFRASKDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVF 149 (341)
T ss_pred hhhHHHHHHHHHHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhccc
Confidence 98743100 011333444568999999987532 2445668899999
Q ss_pred HHHHHHHHHHHc---CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhh
Q psy7542 183 GTRDMLNLSKQM---IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYT 259 (762)
Q Consensus 183 GT~~LLelA~~~---~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~S 259 (762)
|..-+++-.... ..-..+|.+||..+....- +-|.++... .-.+|.-|
T Consensus 150 Ghfyli~~l~pll~~~~~~~lvwtSS~~a~kk~l-----------------------sleD~q~~k------g~~pY~sS 200 (341)
T KOG1478|consen 150 GHFYLIRELEPLLCHSDNPQLVWTSSRMARKKNL-----------------------SLEDFQHSK------GKEPYSSS 200 (341)
T ss_pred chhhhHhhhhhHhhcCCCCeEEEEeecccccccC-----------------------CHHHHhhhc------CCCCcchh
Confidence 977766544321 1224899999985533211 111111111 11579999
Q ss_pred hHHHHHHHHHHHHc----CCCEEEEeeeeeccC
Q psy7542 260 KCLCEGVVTEYMEA----GMPCMILRPSIIIPI 288 (762)
Q Consensus 260 K~~aE~lv~~~~~~----glpv~IvRPs~V~G~ 288 (762)
|.+.+-+-.+..+. |+.--++.||+....
T Consensus 201 Krl~DlLh~A~~~~~~~~g~~qyvv~pg~~tt~ 233 (341)
T KOG1478|consen 201 KRLTDLLHVALNRNFKPLGINQYVVQPGIFTTN 233 (341)
T ss_pred HHHHHHHHHHHhccccccchhhhcccCceeecc
Confidence 99998776555542 566677778866544
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00085 Score=75.29 Aligned_cols=89 Identities=20% Similarity=0.293 Sum_probs=64.8
Q ss_pred EEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCC
Q psy7542 64 IFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPD 142 (762)
Q Consensus 64 VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~ 142 (762)
|+|.|| |++|+.+++.|+++ ++. +|.+..|.. ++++++.+. ....++..+..|+.+++
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~-~~~~~v~va~r~~------~~~~~~~~~-------------~~~~~~~~~~~d~~~~~ 59 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARR-GPFEEVTVADRNP------EKAERLAEK-------------LLGDRVEAVQVDVNDPE 59 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCT-TCE-EEEEEESSH------HHHHHHHT---------------TTTTEEEEE--TTTHH
T ss_pred CEEEcC-cHHHHHHHHHHhcC-CCCCcEEEEECCH------HHHHHHHhh-------------ccccceeEEEEecCCHH
Confidence 789999 99999999999998 466 999999964 344443221 02468999999999865
Q ss_pred CCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 143 LGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 143 LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
++.++++++|+||||++.. + ...++++|.+.
T Consensus 60 ------~l~~~~~~~dvVin~~gp~-~--------------~~~v~~~~i~~ 90 (386)
T PF03435_consen 60 ------SLAELLRGCDVVINCAGPF-F--------------GEPVARACIEA 90 (386)
T ss_dssp ------HHHHHHTTSSEEEE-SSGG-G--------------HHHHHHHHHHH
T ss_pred ------HHHHHHhcCCEEEECCccc-h--------------hHHHHHHHHHh
Confidence 7999999999999999864 1 23688889887
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.003 Score=69.10 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=77.6
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
|+|+|.||||.+|++++..|....... .+.+++|.+.. ... .+ ++ .+. .....+.| .+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-~g~-al-Dl---------------~~~-~~~~~i~~--~~ 59 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-PGV-AV-DL---------------SHI-PTAVKIKG--FS 59 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-cce-eh-hh---------------hcC-CCCceEEE--eC
Confidence 689999999999999999886643333 67777775321 110 00 10 000 11122333 11
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCC
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA 206 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSa 206 (762)
. +++.+.++++|+||-+|+..+- ..+-.+.+..|+..++++++..++. +.+++|.+.|-
T Consensus 60 ~------~d~~~~l~~~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsN 119 (312)
T PRK05086 60 G------EDPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITN 119 (312)
T ss_pred C------CCHHHHcCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccC
Confidence 1 1445566889999999998653 3345578899999999999999987 78888888874
|
|
| >cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5 | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00076 Score=63.97 Aligned_cols=32 Identities=13% Similarity=0.351 Sum_probs=26.1
Q ss_pred CCCeEEEEEEEEE-----cCeEEEEEeehhhHHhhhh
Q psy7542 533 EKPYYVYVIHVRM-----FQQHYIVEKRYSELLSWHS 564 (762)
Q Consensus 533 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 564 (762)
++.+..|.|+... .+..+.|.+|||+|+-||.
T Consensus 13 ~~d~V~Y~V~TkTtl~~F~~~ef~V~RRysDFlwL~~ 49 (141)
T cd07291 13 ERDKVKFTVHTKTTLPSFQSPDFSVTRQHEDFIWLHD 49 (141)
T ss_pred cCCCEEEEEEeCCCCccccCCccEEEeccHHHHHHHH
Confidence 4557999998752 2566899999999999998
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.003 Score=69.36 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=72.4
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCc-------EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENV-------KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v-------~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
+|.||||+|.+|+.++..|+.. ++ .+.++++.+.. ++.+...
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~--~~~~~~~~~~l~L~Di~~~~-----------------------------~~~~g~~ 50 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG--ELFGDDQPVILHLLDIPPAM-----------------------------KALEGVV 50 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC--CccCCCCceEEEEEecCCcc-----------------------------Cccceee
Confidence 6999999999999999988876 33 37888775421 1222334
Q ss_pred eecCCCCCCC-C----HHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 136 GDVAVPDLGI-S----AEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 136 GDl~~~~LGL-s----~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
.|+.+....+ . ..+..+.++++|+|||+||..+- .++-.+.+..|+.-.+++....++..+...++.+
T Consensus 51 ~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiiv 124 (323)
T cd00704 51 MELQDCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLV 124 (323)
T ss_pred eehhhhcccccCCcEEecChHHHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4444431000 0 01234566899999999998653 3455678999999999999888876223444333
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG2101|consensus | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00032 Score=78.18 Aligned_cols=37 Identities=27% Similarity=0.449 Sum_probs=33.4
Q ss_pred eeecCCCCeEEEEEEEEEcCeE-----EEEEeehhhHHhhhh
Q psy7542 528 RLIECEKPYYVYVIHVRMFQQH-----YIVEKRYSELLSWHS 564 (762)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 564 (762)
...+..+.|+||.+.|.+...+ |.|.+||++|..+|.
T Consensus 127 e~~~~~~~~~vy~~~v~~~~~~~~~~~~~V~rRysdf~~l~~ 168 (362)
T KOG2101|consen 127 ESREKSKSFTVYKVTVSVSSRREDLSTAVVSRRYSDFSRLHR 168 (362)
T ss_pred cccccccceeEEEEEEEecCCCccCcCceeeechhHHHHHHH
Confidence 4445678899999999999999 999999999999999
|
|
| >KOG2273|consensus | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=77.18 Aligned_cols=96 Identities=25% Similarity=0.357 Sum_probs=75.9
Q ss_pred eecCCCCeEEEEEEEEEcC-----eEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhh
Q psy7542 529 LIECEKPYYVYVIHVRMFQ-----QHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFI 603 (762)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (762)
..+..+.|..|.|..+... ..+.|.||||+|+.||+ .+.+.+.
T Consensus 121 ~~~~~~~~~~y~i~t~t~~~~~~~~~~~V~RrysDF~~L~~-----------------------------~L~~~~p--- 168 (503)
T KOG2273|consen 121 IGDGMKTYVSYIIETKTSLPIFGSSEFSVRRRYSDFLWLRS-----------------------------KLLSKYP--- 168 (503)
T ss_pred cCCCccceEEEEEEEeeccCcCCCCceeEEeehhHHHHHHH-----------------------------HHHHHCC---
Confidence 3445678999999887443 45799999999999998 5555542
Q ss_pred HhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC------CCChhHHHHHHHHHHHHHHHHHhcC
Q psy7542 604 YQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR------SNQPKVLDERRHLLEIYLKEMFKFG 677 (762)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (762)
..-.|..|+|.+. ..++++++.||..|+.||..+...+
T Consensus 169 ------------------------------------~~~iPplP~k~~~~~~~~~~~s~ef~e~rr~~L~~~l~r~~~hP 212 (503)
T KOG2273|consen 169 ------------------------------------GRIIPPLPEKSIVGSKSGDSFSDEFIEKRRKALERFLNRLSLHP 212 (503)
T ss_pred ------------------------------------CCeeCCCCchhhhhccccCCCCHHHHHHHHHHHHHHHHHHhcCc
Confidence 2267888888753 4589999999999999999998877
Q ss_pred CCh--HHHHhhhCCCCC
Q psy7542 678 PSR--NQVLAFLGVNSK 692 (762)
Q Consensus 678 ~~~--~~~~~~~~~~~~ 692 (762)
..+ ..++.||..++.
T Consensus 213 ~l~~~~~~~~FL~~~~~ 229 (503)
T KOG2273|consen 213 VLSNDEDFRLFLESDSK 229 (503)
T ss_pred ccccCHHHHHHhccccc
Confidence 776 788999998854
|
|
| >cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0013 Score=62.36 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=25.4
Q ss_pred CCeEEEEEEEEEc-----CeEEEEEeehhhHHhhhh
Q psy7542 534 KPYYVYVIHVRMF-----QQHYIVEKRYSELLSWHS 564 (762)
Q Consensus 534 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 564 (762)
+....|.|+.... +..+.|.+|||+|+-||.
T Consensus 14 ~d~V~Y~V~TkTtlp~F~~~e~sV~RRysDF~wL~~ 49 (141)
T cd07292 14 RDKVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHD 49 (141)
T ss_pred CCceEEEEEecccCcccCCCceEEEeccHhHHHHHH
Confidence 3458999988632 567999999999999998
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0012 Score=73.70 Aligned_cols=99 Identities=28% Similarity=0.341 Sum_probs=74.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++|+|.|| |++|+.++.+|++++ +.+|++.+|++.. ..|+.+ ....+++.+..|+.+.
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~-d~~V~iAdRs~~~---~~~i~~-----------------~~~~~v~~~~vD~~d~ 59 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNG-DGEVTIADRSKEK---CARIAE-----------------LIGGKVEALQVDAADV 59 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCC-CceEEEEeCCHHH---HHHHHh-----------------hccccceeEEecccCh
Confidence 68999998 999999999999993 3699999998532 122221 1234899999999987
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCc
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAY 207 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay 207 (762)
+ .+.+++++.|+||+||... + +.+++++|.+. ++ .++-|++
T Consensus 60 ~------al~~li~~~d~VIn~~p~~---------~------~~~i~ka~i~~-gv---~yvDts~ 100 (389)
T COG1748 60 D------ALVALIKDFDLVINAAPPF---------V------DLTILKACIKT-GV---DYVDTSY 100 (389)
T ss_pred H------HHHHHHhcCCEEEEeCCch---------h------hHHHHHHHHHh-CC---CEEEccc
Confidence 6 7889999999999998641 0 13788999987 33 3555554
|
|
| >KOG2733|consensus | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0014 Score=71.02 Aligned_cols=100 Identities=17% Similarity=0.343 Sum_probs=72.1
Q ss_pred EEEEECCCChhHHHHHHHHHHc--CCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRT--CENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~--gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
-+.|-|||||.|+.+++.+++. .++..+-+..|+. ++|++.++ .+.+.. ....+...++.+|..|
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~------~KL~~vL~-----~~~~k~--~~~ls~~~i~i~D~~n 73 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNE------KKLQEVLE-----KVGEKT--GTDLSSSVILIADSAN 73 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCH------HHHHHHHH-----HHhhcc--CCCcccceEEEecCCC
Confidence 3889999999999999999983 2355666666653 45554432 111111 1123334488999998
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
+. .+.++++.+.+|+||++.-++... .++++|.+.
T Consensus 74 ~~------Sl~emak~~~vivN~vGPyR~hGE-------------~VVkacien 108 (423)
T KOG2733|consen 74 EA------SLDEMAKQARVIVNCVGPYRFHGE-------------PVVKACIEN 108 (423)
T ss_pred HH------HHHHHHhhhEEEEeccccceecCc-------------HHHHHHHHc
Confidence 77 899999999999999999887654 478899886
|
|
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0012 Score=74.28 Aligned_cols=76 Identities=21% Similarity=0.224 Sum_probs=54.7
Q ss_pred cCCCEEEEECC----------------CChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhh
Q psy7542 59 LEHKNIFITGA----------------SGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQ 122 (762)
Q Consensus 59 ~~gk~VLVTGA----------------TGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~ 122 (762)
++||+|+|||| ||.+|.++++.|.++ |.+|+++.++.....
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~--Ga~V~~v~~~~~~~~--------------------- 242 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARR--GADVTLVSGPVNLPT--------------------- 242 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHC--CCEEEEeCCCccccC---------------------
Confidence 68999999999 999999999999999 778888887642100
Q ss_pred hcccccCCeEEEEeecCCCCCCCCHHHHHhh----cCCccEEEEcccccCcc
Q psy7542 123 SESAIFEKVIPINGDVAVPDLGISAEDRQML----SETIHIVYHIAATVRFD 170 (762)
Q Consensus 123 ~~~~~~~kV~~V~GDl~~~~LGLs~~~l~~l----~~~vDiViH~AA~v~f~ 170 (762)
+ ..+ ...|+++.+ ++.+. ..++|++||+||..++.
T Consensus 243 --~---~~~--~~~dv~~~~------~~~~~v~~~~~~~DilI~~Aav~d~~ 281 (399)
T PRK05579 243 --P---AGV--KRIDVESAQ------EMLDAVLAALPQADIFIMAAAVADYR 281 (399)
T ss_pred --C---CCc--EEEccCCHH------HHHHHHHHhcCCCCEEEEcccccccc
Confidence 1 122 345776543 34333 35689999999987654
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0022 Score=64.93 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=55.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++++|+|+||||.+|+.+++.|++. +.+|+++.|.. ++.+++.+ .+.. ........+|.
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~--g~~V~l~~R~~------~~~~~l~~-----~l~~-------~~~~~~~~~~~ 85 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLARE--GARVVLVGRDL------ERAQKAAD-----SLRA-------RFGEGVGAVET 85 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEcCCH------HHHHHHHH-----HHHh-------hcCCcEEEeeC
Confidence 47899999999999999999999987 56888888852 33333211 1110 01233445566
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAAT 166 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~ 166 (762)
.+. +++...++++|+||++.+.
T Consensus 86 ~~~------~~~~~~~~~~diVi~at~~ 107 (194)
T cd01078 86 SDD------AARAAAIKGADVVFAAGAA 107 (194)
T ss_pred CCH------HHHHHHHhcCCEEEECCCC
Confidence 543 3677788899999997654
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0061 Score=66.97 Aligned_cols=114 Identities=15% Similarity=0.133 Sum_probs=74.2
Q ss_pred EEEEECCCChhHHHHHHHHHHcC-----CCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 63 NIFITGASGFVGKVLLEKILRTC-----ENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~g-----p~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+|.|+||+|.+|+.++..|+..+ .++.+.++++.+.. ++.+.+..|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~-----------------------------~~a~g~~~D 51 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAM-----------------------------KVLEGVVME 51 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcc-----------------------------cccceeEee
Confidence 48999999999999999998751 12247888875432 122333444
Q ss_pred cCCCCCCC-C----HHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 138 VAVPDLGI-S----AEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 138 l~~~~LGL-s----~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
+.+...-+ . ..+..+.++++|+|||+|+..+- .++..+.+..|+.-.+.+.+...+..+...++.+-|
T Consensus 52 l~d~~~~~~~~~~~~~~~~~~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs 125 (324)
T TIGR01758 52 LMDCAFPLLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG 125 (324)
T ss_pred hhcccchhcCceeccCChHHHhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 44433100 0 00223556899999999998654 344678899999999999998888622334444433
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.017 Score=64.81 Aligned_cols=183 Identities=17% Similarity=0.121 Sum_probs=100.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
..++|.|.||||++|..|++.|+++ |+++|..+.+..... +.+.+ .......+|+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~h-P~~el~~l~s~~saG---~~i~~--------------------~~~~l~~~~~~ 92 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANH-PDFEITVMTADRKAG---QSFGS--------------------VFPHLITQDLP 92 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhC-CCCeEEEEEChhhcC---CCchh--------------------hCccccCcccc
Confidence 5679999999999999999999888 888999988753221 11110 01112223432
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCccccccc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKT 219 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~ 219 (762)
+.. -+ +... ++++|+||-+.+.- ...+++.... . + .++|-.|+++-..+.. .-|+.
T Consensus 93 ~~~-~~---~~~~-~~~~DvVf~Alp~~---------------~s~~i~~~~~-~-g-~~VIDlSs~fRl~~~~-~y~~~ 148 (381)
T PLN02968 93 NLV-AV---KDAD-FSDVDAVFCCLPHG---------------TTQEIIKALP-K-D-LKIVDLSADFRLRDIA-EYEEW 148 (381)
T ss_pred cee-cC---CHHH-hcCCCEEEEcCCHH---------------HHHHHHHHHh-C-C-CEEEEcCchhccCCcc-cchhc
Confidence 111 01 1122 36899999876431 3345555542 2 3 6799999987654432 23444
Q ss_pred CCCCC-ChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCC---CEEEEeeeeeccCCCCC
Q psy7542 220 YPPPV-SPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGM---PCMILRPSIIIPIWKDP 292 (762)
Q Consensus 220 ~~~p~-~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~gl---pv~IvRPs~V~G~~~eP 292 (762)
|..|. .|+-.-+.+-.+.|-.-+.+....+-.-|+.|+.+=.++=.=+.+.. .+ ++++-=.+-+-|.++.+
T Consensus 149 y~~p~~~pe~~~~~~yglpE~~r~~i~~~~iIAnPgC~~t~~~laL~PL~~~~--~i~~~~iiv~a~sgvSGAG~~~ 223 (381)
T PLN02968 149 YGHPHRAPELQKEAVYGLTELQREEIKSARLVANPGCYPTGIQLPLVPLVKAG--LIEPDNIIIDAKSGVSGAGRGA 223 (381)
T ss_pred cCCCCCCcccchhhhcccchhCHHHhcCCCEEECCCCHHHHHHHHHHHHHHcC--CCCCceEEEEEeeeccccCccc
Confidence 44332 22211111222333223333333344568899888777666655432 23 25555556666666554
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0031 Score=63.67 Aligned_cols=80 Identities=24% Similarity=0.242 Sum_probs=47.7
Q ss_pred CCCEEEEECC----------------CChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhh
Q psy7542 60 EHKNIFITGA----------------SGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQS 123 (762)
Q Consensus 60 ~gk~VLVTGA----------------TGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~ 123 (762)
+||+||||+| ||-+|..|++.++++ |.+|.++..+..-
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~--Ga~V~li~g~~~~------------------------ 55 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARR--GAEVTLIHGPSSL------------------------ 55 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHT--T-EEEEEE-TTS-------------------------
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHC--CCEEEEEecCccc------------------------
Confidence 5677777754 899999999999999 6777888776321
Q ss_pred cccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccc
Q psy7542 124 ESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDD 171 (762)
Q Consensus 124 ~~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~ 171 (762)
.....+..+..+-.+.- .+.+...+.+.|++||+||..+|..
T Consensus 56 --~~p~~~~~i~v~sa~em----~~~~~~~~~~~Di~I~aAAVsDf~p 97 (185)
T PF04127_consen 56 --PPPPGVKVIRVESAEEM----LEAVKELLPSADIIIMAAAVSDFRP 97 (185)
T ss_dssp -----TTEEEEE-SSHHHH----HHHHHHHGGGGSEEEE-SB--SEEE
T ss_pred --cccccceEEEecchhhh----hhhhccccCcceeEEEecchhheee
Confidence 11245666665433221 1234455567899999999988753
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0096 Score=63.25 Aligned_cols=93 Identities=8% Similarity=0.214 Sum_probs=62.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||+||||. |+.|++.|.+. +++|++.+|...+.... .......+.++..+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~--g~~v~~s~~t~~~~~~~-----------------------~~~g~~~v~~g~l~- 53 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQ--GIEILVTVTTSEGKHLY-----------------------PIHQALTVHTGALD- 53 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhC--CCeEEEEEccCCccccc-----------------------cccCCceEEECCCC-
Confidence 57999999999 99999999988 67888888876543210 01122334444333
Q ss_pred CCCCCHHHHHhhcC--CccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccE
Q psy7542 142 DLGISAEDRQMLSE--TIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQL 199 (762)
Q Consensus 142 ~LGLs~~~l~~l~~--~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~ 199 (762)
.+++..+++ ++|+|||++.. +. ..-+.++.++|++. ++.-
T Consensus 54 -----~~~l~~~l~~~~i~~VIDAtHP------fA------~~is~~a~~a~~~~-~ipy 95 (256)
T TIGR00715 54 -----PQELREFLKRHSIDILVDATHP------FA------AQITTNATAVCKEL-GIPY 95 (256)
T ss_pred -----HHHHHHHHHhcCCCEEEEcCCH------HH------HHHHHHHHHHHHHh-CCcE
Confidence 335656554 48999998753 21 13367888999987 5543
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.009 Score=64.60 Aligned_cols=84 Identities=15% Similarity=0.125 Sum_probs=55.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.++++++|||| |.+|++++..|.+. ++ +|+++.|.... .+|.+++.+ .+.. ....+.+...|
T Consensus 124 ~~~k~vlI~GA-GGagrAia~~La~~--G~~~V~I~~R~~~~---~~~a~~l~~-----~l~~------~~~~~~~~~~d 186 (289)
T PRK12548 124 VKGKKLTVIGA-GGAATAIQVQCALD--GAKEITIFNIKDDF---YERAEQTAE-----KIKQ------EVPECIVNVYD 186 (289)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHC--CCCEEEEEeCCchH---HHHHHHHHH-----HHhh------cCCCceeEEec
Confidence 36889999998 89999999999988 77 69999997421 123333221 1111 11234455677
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEccc
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAA 165 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA 165 (762)
+.+.+ ++...++.+|+|||+-.
T Consensus 187 ~~~~~------~~~~~~~~~DilINaTp 208 (289)
T PRK12548 187 LNDTE------KLKAEIASSDILVNATL 208 (289)
T ss_pred hhhhh------HHHhhhccCCEEEEeCC
Confidence 76543 56667778899998643
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.012 Score=55.09 Aligned_cols=34 Identities=24% Similarity=0.512 Sum_probs=28.6
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENV-KIYILLRPK 97 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~ 97 (762)
+|.|.||||++|+.|++.|++. |.+ -+.+..|+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p~~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-PDFELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-STEEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcC-CCccEEEeeeecc
Confidence 5899999999999999999996 888 556666655
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.054 Score=52.24 Aligned_cols=115 Identities=16% Similarity=0.109 Sum_probs=73.9
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++|.|+||+|.+|++++..|+..+-.-+++++++.... ++....++... . .....++.+..+|
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~--~~g~a~Dl~~~---------~--~~~~~~~~i~~~~---- 63 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDK--AEGEALDLSHA---------S--APLPSPVRITSGD---- 63 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHH--HHHHHHHHHHH---------H--HGSTEEEEEEESS----
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCccc--ceeeehhhhhh---------h--hhccccccccccc----
Confidence 57999999999999999999988221289999986431 11111222110 0 1111233333322
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
.+.++++|+|+-+|+..+- .++-.+.++.|+.-.+++.+...+. +...++.+
T Consensus 64 ---------~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~-~p~~~viv 116 (141)
T PF00056_consen 64 ---------YEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKY-APDAIVIV 116 (141)
T ss_dssp ---------GGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHH-STTSEEEE
T ss_pred ---------ccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHh-CCccEEEE
Confidence 2235799999999997543 3556678899999999999998887 34444433
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.11 Score=53.69 Aligned_cols=162 Identities=13% Similarity=0.102 Sum_probs=95.1
Q ss_pred ccCCCEEEEECCC--ChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 58 TLEHKNIFITGAS--GFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 58 ~~~gk~VLVTGAT--GFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
+++||++||+|-. -.|+..+++.|.+. +.++...-... ..+.|++++.+ ....-.+++
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~--GAeL~fTy~~e---~l~krv~~la~---------------~~~s~~v~~ 62 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQ--GAELAFTYQGE---RLEKRVEELAE---------------ELGSDLVLP 62 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHc--CCEEEEEeccH---HHHHHHHHHHh---------------hccCCeEEe
Confidence 5789999999964 56899999999998 55444433322 34556655532 112345789
Q ss_pred eecCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------c----ccHHHHHHHhHHHHHHHHHHHHHc-CC
Q psy7542 136 GDVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------D----DYMQTYVFLNTRGTRDMLNLSKQM-IH 196 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~----~~l~~~~~~NV~GT~~LLelA~~~-~~ 196 (762)
+|+++.. +++.++ .+.|.++|+-|..+- - +.+..+.++-.-+...+.+.|+.+ ++
T Consensus 63 cDV~~d~------~i~~~f~~i~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ 136 (259)
T COG0623 63 CDVTNDE------SIDALFATIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNN 136 (259)
T ss_pred cCCCCHH------HHHHHHHHHHHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCC
Confidence 9999865 444443 467999999997652 1 223334444444555555555543 22
Q ss_pred ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---
Q psy7542 197 LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--- 273 (762)
Q Consensus 197 lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--- 273 (762)
-..+|-.|=..+ |+..| .-|.-+.+|+.-|.-++-.+..
T Consensus 137 ggSiltLtYlgs--------~r~vP------------------------------nYNvMGvAKAaLEasvRyLA~dlG~ 178 (259)
T COG0623 137 GGSILTLTYLGS--------ERVVP------------------------------NYNVMGVAKAALEASVRYLAADLGK 178 (259)
T ss_pred CCcEEEEEeccc--------eeecC------------------------------CCchhHHHHHHHHHHHHHHHHHhCc
Confidence 223333221111 11111 1167899999999988877662
Q ss_pred -CCCEEEEeee
Q psy7542 274 -GMPCMILRPS 283 (762)
Q Consensus 274 -glpv~IvRPs 283 (762)
|+++.-+-.|
T Consensus 179 ~gIRVNaISAG 189 (259)
T COG0623 179 EGIRVNAISAG 189 (259)
T ss_pred cCeEEeeeccc
Confidence 5555544443
|
|
| >KOG1202|consensus | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0079 Score=72.99 Aligned_cols=166 Identities=16% Similarity=0.227 Sum_probs=114.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
..|+.+|+||-|..|-.|+..|+.+ ++ ++.+..|+.-....+.+.-. +.+. ..-+|.+-.-|+
T Consensus 1767 peksYii~GGLGGFGLELaqWLi~R--Gar~lVLtSRsGirtGYQa~~vr--------rWr~------~GVqV~vsT~ni 1830 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQR--GARKLVLTSRSGIRTGYQALMVR--------RWRR------RGVQVQVSTSNI 1830 (2376)
T ss_pred ccceEEEeccccchhHHHHHHHHhc--CceEEEEeccccchhhHHHHHHH--------HHHh------cCeEEEEecccc
Confidence 3588999999999999999999999 77 77788887544333333322 1111 112333334455
Q ss_pred CCCCCCCCHHHHHhhcCC------ccEEEEcccccCc----c---ccHHHHHHHhHHHHHHHHHHHHH-cCCccEEEEEe
Q psy7542 139 AVPDLGISAEDRQMLSET------IHIVYHIAATVRF----D---DYMQTYVFLNTRGTRDMLNLSKQ-MIHLQLFVYVS 204 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~------vDiViH~AA~v~f----~---~~l~~~~~~NV~GT~~LLelA~~-~~~lk~fV~vS 204 (762)
+... ....++++ |-.|||+|+..+. + .++++.-+.-+.||.+|=++.++ |+.++-||..|
T Consensus 1831 tt~~------ga~~Li~~s~kl~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FS 1904 (2376)
T KOG1202|consen 1831 TTAE------GARGLIEESNKLGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFS 1904 (2376)
T ss_pred hhhh------hHHHHHHHhhhcccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEE
Confidence 5432 44555543 6789999998752 2 34555666678899999888876 57789999999
Q ss_pred CCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeee
Q psy7542 205 TAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSI 284 (762)
Q Consensus 205 Say~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~ 284 (762)
|..+....- ..+.|+.+....|+++.+....|+|-+.+.=|.
T Consensus 1905 SvscGRGN~--------------------------------------GQtNYG~aNS~MERiceqRr~~GfPG~AiQWGA 1946 (2376)
T KOG1202|consen 1905 SVSCGRGNA--------------------------------------GQTNYGLANSAMERICEQRRHEGFPGTAIQWGA 1946 (2376)
T ss_pred eecccCCCC--------------------------------------cccccchhhHHHHHHHHHhhhcCCCcceeeeec
Confidence 985432211 015799999999999988776699988887776
Q ss_pred e
Q psy7542 285 I 285 (762)
Q Consensus 285 V 285 (762)
|
T Consensus 1947 I 1947 (2376)
T KOG1202|consen 1947 I 1947 (2376)
T ss_pred c
Confidence 5
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.024 Score=62.77 Aligned_cols=124 Identities=19% Similarity=0.208 Sum_probs=73.7
Q ss_pred hhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHH-----HHH-----hcChhHHHHHhhh
Q psy7542 54 RISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERL-----EEI-----FQSPLYEALKKEQ 122 (762)
Q Consensus 54 ~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl-----~~l-----l~~~~f~~l~~~~ 122 (762)
+-++-++.++|+|.|+ |.+|+.++..|.+. |+ +|.++++..-..+...|. .++ .....-+++++-+
T Consensus 17 ~~Q~~L~~~~VlVvG~-GglGs~va~~La~a--Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~in 93 (339)
T PRK07688 17 EGQQKLREKHVLIIGA-GALGTANAEMLVRA--GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEIN 93 (339)
T ss_pred HHHHHhcCCcEEEECC-CHHHHHHHHHHHHc--CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHC
Confidence 3456678899999996 99999999999998 78 888888854221111111 000 0000011222111
Q ss_pred hcccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEE
Q psy7542 123 SESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVY 202 (762)
Q Consensus 123 ~~~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~ 202 (762)
+ .-+++.+..+++. +....+++++|+||.+.. + ...-..+-++|.+. + ..+|+
T Consensus 94 --p--~v~v~~~~~~~~~-------~~~~~~~~~~DlVid~~D------n--------~~~r~~ln~~~~~~-~-iP~i~ 146 (339)
T PRK07688 94 --S--DVRVEAIVQDVTA-------EELEELVTGVDLIIDATD------N--------FETRFIVNDAAQKY-G-IPWIY 146 (339)
T ss_pred --C--CcEEEEEeccCCH-------HHHHHHHcCCCEEEEcCC------C--------HHHHHHHHHHHHHh-C-CCEEE
Confidence 1 2345666666643 356778899999998743 1 11122456777776 4 46788
Q ss_pred EeCCc
Q psy7542 203 VSTAY 207 (762)
Q Consensus 203 vSSay 207 (762)
.|+..
T Consensus 147 ~~~~g 151 (339)
T PRK07688 147 GACVG 151 (339)
T ss_pred Eeeee
Confidence 77653
|
|
| >COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.013 Score=68.08 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=33.0
Q ss_pred CCCCCCCCCcCC------CCChhHHHHHHHHHHHHHHHHHhcCC
Q psy7542 641 FSTPSFPPKKIR------SNQPKVLDERRHLLEIYLKEMFKFGP 678 (762)
Q Consensus 641 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (762)
...|.+|.|+.. ...++++++|+++|+.|++-+...+.
T Consensus 196 ~~iPplP~K~~~s~~~~~~~~~~~i~~r~~~L~~~~~~~~~hp~ 239 (524)
T COG5391 196 CAIPPLPSKKSNSEYYGDRFSDEFIEERRQSLQNFLRRVSTHPL 239 (524)
T ss_pred CCCCCCCchhhhccccccccchHHHHHHHHHHHHHHHHHhcCcc
Confidence 388999999976 57899999999999999999876554
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.02 Score=64.42 Aligned_cols=76 Identities=24% Similarity=0.335 Sum_probs=53.9
Q ss_pred cCCCEEEEECC----------------CChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhh
Q psy7542 59 LEHKNIFITGA----------------SGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQ 122 (762)
Q Consensus 59 ~~gk~VLVTGA----------------TGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~ 122 (762)
++|++|+|||| ||.+|..+++.|..+ |.+|+++.++.....
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~--Ga~V~~~~g~~~~~~--------------------- 239 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKR--GADVTLITGPVSLLT--------------------- 239 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHC--CCEEEEeCCCCccCC---------------------
Confidence 67899999998 578999999999999 777788776542110
Q ss_pred hcccccCCeEEEEeecCCCCCCCCHHHH-H----hhcCCccEEEEcccccCcc
Q psy7542 123 SESAIFEKVIPINGDVAVPDLGISAEDR-Q----MLSETIHIVYHIAATVRFD 170 (762)
Q Consensus 123 ~~~~~~~kV~~V~GDl~~~~LGLs~~~l-~----~l~~~vDiViH~AA~v~f~ 170 (762)
+ ..+ ...|+.+.+ ++ + .+..++|++||+||..+|.
T Consensus 240 --~---~~~--~~~~v~~~~------~~~~~~~~~~~~~~D~~i~~Aavsd~~ 279 (390)
T TIGR00521 240 --P---PGV--KSIKVSTAE------EMLEAALNELAKDFDIFISAAAVADFK 279 (390)
T ss_pred --C---CCc--EEEEeccHH------HHHHHHHHhhcccCCEEEEcccccccc
Confidence 1 122 345776543 34 3 3345689999999997663
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.044 Score=60.64 Aligned_cols=124 Identities=20% Similarity=0.303 Sum_probs=73.2
Q ss_pred hhhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHH-----HH-----hcChhHHHHHhh
Q psy7542 53 DRISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE-----EI-----FQSPLYEALKKE 121 (762)
Q Consensus 53 ~~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~-----~l-----l~~~~f~~l~~~ 121 (762)
.+-++-+++++|+|.|+ |-+|+++++.|.+. |+ +|.++++..-..+...|.. +. .....-+++++.
T Consensus 16 ~~~Q~~L~~~~VlIiG~-GglGs~va~~La~a--Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~i 92 (338)
T PRK12475 16 EEGQRKIREKHVLIVGA-GALGAANAEALVRA--GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKI 92 (338)
T ss_pred HHHHHhhcCCcEEEECC-CHHHHHHHHHHHHc--CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHH
Confidence 34566778899999996 66999999999998 78 8888888642221111110 00 000001122222
Q ss_pred hhcccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEE
Q psy7542 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFV 201 (762)
Q Consensus 122 ~~~~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV 201 (762)
. ..-+++.+..|++. +.++.+++++|+||.+.- ++.. -..+-++|.+. + ..+|
T Consensus 93 n----p~v~i~~~~~~~~~-------~~~~~~~~~~DlVid~~D------~~~~--------r~~in~~~~~~-~-ip~i 145 (338)
T PRK12475 93 N----SEVEIVPVVTDVTV-------EELEELVKEVDLIIDATD------NFDT--------RLLINDLSQKY-N-IPWI 145 (338)
T ss_pred C----CCcEEEEEeccCCH-------HHHHHHhcCCCEEEEcCC------CHHH--------HHHHHHHHHHc-C-CCEE
Confidence 2 12356667677653 357778899999998752 1111 11244677765 4 4577
Q ss_pred EEeCC
Q psy7542 202 YVSTA 206 (762)
Q Consensus 202 ~vSSa 206 (762)
+.+..
T Consensus 146 ~~~~~ 150 (338)
T PRK12475 146 YGGCV 150 (338)
T ss_pred EEEec
Confidence 87765
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.31 Score=53.40 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=73.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc--EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV--KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v--~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
++++|.|+|| |.+|..++..|+.. ++ ++.++++..... .....++.+. . +. ..++.+..+|
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~--~~~~el~L~D~~~~~~--~g~~~Dl~~~---------~--~~-~~~~~i~~~~ 67 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQ--GIADELVIIDINKEKA--EGDAMDLSHA---------V--PF-TSPTKIYAGD 67 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhc--CCCCEEEEEeCCCchh--HHHHHHHHhh---------c--cc-cCCeEEEeCC
Confidence 5689999998 99999999998887 55 899998854321 1111122110 0 11 1233333222
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
++. ++++|+||-+|+..+- ..+-.+.+..|..-.+.+++..++. +...++.+
T Consensus 68 ------------~~~-~~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~-~~~~~viv 120 (315)
T PRK00066 68 ------------YSD-CKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMAS-GFDGIFLV 120 (315)
T ss_pred ------------HHH-hCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEE
Confidence 333 5899999999997653 3455678899999999988888775 33444433
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.075 Score=58.08 Aligned_cols=120 Identities=20% Similarity=0.112 Sum_probs=70.8
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|.|+||||.+|..++..|+..+...+|.+++|..+.........++ .+.+. ....... +.+ +
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl-----~d~~~------~~~~~~~-i~~--~-- 64 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDI-----YDALA------AAGIDAE-IKI--S-- 64 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchh-----hhchh------ccCCCcE-EEE--C--
Confidence 579999999999999999999983322799999954211111100011 01000 0001111 111 1
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEe
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVS 204 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vS 204 (762)
. +++. +.++|+||-+|+...- ..+-.+.+..|+.-.+.+.+...+...-..++.++
T Consensus 65 ~------d~~~-l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~ 121 (309)
T cd05294 65 S------DLSD-VAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT 121 (309)
T ss_pred C------CHHH-hCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 0 2333 6899999999997654 33445678889999999888776652212444444
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.04 Score=52.67 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=53.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++++|+|.|| |.+|+.++..|... ++ +|++..|.. +|.+++.+. .....+.++..+
T Consensus 10 l~~~~vlviGa-Gg~ar~v~~~L~~~--g~~~i~i~nRt~------~ra~~l~~~-------------~~~~~~~~~~~~ 67 (135)
T PF01488_consen 10 LKGKRVLVIGA-GGAARAVAAALAAL--GAKEITIVNRTP------ERAEALAEE-------------FGGVNIEAIPLE 67 (135)
T ss_dssp GTTSEEEEESS-SHHHHHHHHHHHHT--TSSEEEEEESSH------HHHHHHHHH-------------HTGCSEEEEEGG
T ss_pred cCCCEEEEECC-HHHHHHHHHHHHHc--CCCEEEEEECCH------HHHHHHHHH-------------cCccccceeeHH
Confidence 58999999996 88999999999998 77 799999963 444444321 001234444332
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEcccccC
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAATVR 168 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA~v~ 168 (762)
++...+.++|+||++.+...
T Consensus 68 -----------~~~~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 68 -----------DLEEALQEADIVINATPSGM 87 (135)
T ss_dssp -----------GHCHHHHTESEEEE-SSTTS
T ss_pred -----------HHHHHHhhCCeEEEecCCCC
Confidence 45566788999999976543
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.03 Score=61.82 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=31.5
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKK 98 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~ 98 (762)
+++|+|.||||++|..|++.|.++++.+ ++..+.|...
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~ 39 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARS 39 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcccc
Confidence 4689999999999999999998875444 8888887643
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.11 Score=59.56 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=52.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|+|+|+++ +|..+++.|++. |.+|.+..+.... ...++++++ . ..++.++.+|.
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~--G~~V~~~d~~~~~-~~~~~~~~l---------~--------~~~~~~~~~~~ 61 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKL--GAKVILTDEKEED-QLKEALEEL---------G--------ELGIELVLGEY 61 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHC--CCEEEEEeCCchH-HHHHHHHHH---------H--------hcCCEEEeCCc
Confidence 4789999999888 999999999999 6677777775321 111212211 0 12466777877
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEccccc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATV 167 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v 167 (762)
.+ ....++|+||++++..
T Consensus 62 ~~-----------~~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 62 PE-----------EFLEGVDLVVVSPGVP 79 (450)
T ss_pred ch-----------hHhhcCCEEEECCCCC
Confidence 64 2245789999998864
|
|
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.031 Score=58.37 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=23.3
Q ss_pred EEE-CCCChhHHHHHHHHHHcCCCcEEEEEeC
Q psy7542 65 FIT-GASGFVGKVLLEKILRTCENVKIYILLR 95 (762)
Q Consensus 65 LVT-GATGFLG~~LvekLL~~gp~v~V~~LvR 95 (762)
+|| .+||.||.++++.|++. |.+|+++.|
T Consensus 18 ~itN~SSGgIG~AIA~~la~~--Ga~Vvlv~~ 47 (227)
T TIGR02114 18 SITNHSTGHLGKIITETFLSA--GHEVTLVTT 47 (227)
T ss_pred eecCCcccHHHHHHHHHHHHC--CCEEEEEcC
Confidence 344 45999999999999998 677777765
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.21 Score=53.04 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=27.4
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
++|.|+|++|.+|+.+++.+.+. +++++..++..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~-~~~elvav~d~ 35 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA-EDLELVAAVDR 35 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEec
Confidence 57999999999999999887765 67866665543
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.12 Score=53.38 Aligned_cols=129 Identities=14% Similarity=0.118 Sum_probs=73.8
Q ss_pred hhhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHH---HHhc----ChhHHHHHhhhhc
Q psy7542 53 DRISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE---EIFQ----SPLYEALKKEQSE 124 (762)
Q Consensus 53 ~~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~---~ll~----~~~f~~l~~~~~~ 124 (762)
...++-++..+|+|.| .|-+|+.+++.|.+. ++ ++.+.+...-..+...|.. +-.. ...-++++.-.
T Consensus 20 ~~~q~~L~~~~V~ViG-~GglGs~ia~~La~~--Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln-- 94 (212)
T PRK08644 20 PKLLEKLKKAKVGIAG-AGGLGSNIAVALARS--GVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN-- 94 (212)
T ss_pred HHHHHHHhCCCEEEEC-cCHHHHHHHHHHHHc--CCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC--
Confidence 3446667889999999 588999999999998 77 8888887632222111110 0000 00011111111
Q ss_pred ccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEe
Q psy7542 125 SAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVS 204 (762)
Q Consensus 125 ~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vS 204 (762)
..-+++.+...+++ ++..++++++|+||.|.- + ......+.+.|.+..+ ..+|+.+
T Consensus 95 --p~v~v~~~~~~i~~-------~~~~~~~~~~DvVI~a~D------~--------~~~r~~l~~~~~~~~~-~p~I~~~ 150 (212)
T PRK08644 95 --PFVEIEAHNEKIDE-------DNIEELFKDCDIVVEAFD------N--------AETKAMLVETVLEHPG-KKLVAAS 150 (212)
T ss_pred --CCCEEEEEeeecCH-------HHHHHHHcCCCEEEECCC------C--------HHHHHHHHHHHHHhCC-CCEEEee
Confidence 12345555555543 356677889999998832 1 1222345567766523 5677776
Q ss_pred CCcccC
Q psy7542 205 TAYCHP 210 (762)
Q Consensus 205 Say~~~ 210 (762)
...+.+
T Consensus 151 ~~~~~~ 156 (212)
T PRK08644 151 GMAGYG 156 (212)
T ss_pred hhhccC
Confidence 554433
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.19 Score=55.32 Aligned_cols=119 Identities=15% Similarity=0.105 Sum_probs=73.2
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCc-------EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEE
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENV-------KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIP 133 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v-------~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~ 133 (762)
.-+|.|+||+|++|+.++..|+.. ++ ++.++++.+....++....++.... ......+.+
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~--~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~-----------~~~~~~~~i 69 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASG--ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCA-----------FPLLAGVVA 69 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC--CcccCCCccEEEEEecCCcccccchHHHHHhhcc-----------ccccCCcEE
Confidence 357999999999999999999877 43 5888877542211111112221100 001112222
Q ss_pred EEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 134 INGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 134 V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
..+ ++ +.++++|+||-+|+..+- .++-.+.+..|+.-.+.+.+..++......++.+-|
T Consensus 70 ~~~------------~~-~~~~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 70 TTD------------PE-EAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred ecC------------hH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 111 23 345889999999998653 355667899999999999988888622144444444
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.096 Score=53.63 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=72.6
Q ss_pred hhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHH-----H---HhcChhHHHHHhhhhc
Q psy7542 54 RISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE-----E---IFQSPLYEALKKEQSE 124 (762)
Q Consensus 54 ~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~-----~---ll~~~~f~~l~~~~~~ 124 (762)
+.++.+++++|+|.| .|-+|+.+++.|.+. ++ ++.++++..-..+...|.- + ......-++++.-.
T Consensus 14 ~~q~kl~~~~VlviG-~GglGs~ia~~La~~--Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-- 88 (202)
T TIGR02356 14 EGQQRLLNSHVLIIG-AGGLGSPAALYLAGA--GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN-- 88 (202)
T ss_pred HHHHHhcCCCEEEEC-CCHHHHHHHHHHHHc--CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC--
Confidence 445667889999999 788999999999998 78 8888888643322222210 0 00000111222211
Q ss_pred ccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEe
Q psy7542 125 SAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVS 204 (762)
Q Consensus 125 ~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vS 204 (762)
| .-+++.+..++. .+++.++++++|+||-|... ++. -..+-++|++. + +.||+.+
T Consensus 89 p--~v~i~~~~~~i~-------~~~~~~~~~~~D~Vi~~~d~------~~~--------r~~l~~~~~~~-~-ip~i~~~ 143 (202)
T TIGR02356 89 S--DIQVTALKERVT-------AENLELLINNVDLVLDCTDN------FAT--------RYLINDACVAL-G-TPLISAA 143 (202)
T ss_pred C--CCEEEEehhcCC-------HHHHHHHHhCCCEEEECCCC------HHH--------HHHHHHHHHHc-C-CCEEEEE
Confidence 1 123444444433 34567788999999987532 111 12355777776 4 4688877
Q ss_pred CC
Q psy7542 205 TA 206 (762)
Q Consensus 205 Sa 206 (762)
+.
T Consensus 144 ~~ 145 (202)
T TIGR02356 144 VV 145 (202)
T ss_pred ec
Confidence 65
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.14 Score=56.87 Aligned_cols=181 Identities=16% Similarity=0.134 Sum_probs=90.7
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEE-eCCC-CCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEE-Eeec
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYIL-LRPK-KNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPI-NGDV 138 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~L-vR~~-~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V-~GDl 138 (762)
++|.|.||||++|..+++.|.+. |++++..+ .+.. .++. +.+.+ ..+... ..++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-P~~el~~l~~s~~sagk~----~~~~~------------------~~l~~~~~~~~ 57 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-PEVEITYLVSSRESAGKP----VSEVH------------------PHLRGLVDLNL 57 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-CCceEEEEeccchhcCCC----hHHhC------------------ccccccCCcee
Confidence 47999999999999999999876 88877744 4332 2221 11110 111111 1111
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEK 218 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~ 218 (762)
.+. +.+.+.+++|+||-|...- ...+++..+.+. + +++|=.|+.+-..+. ..-|+
T Consensus 58 ~~~-------~~~~~~~~~DvVf~alP~~---------------~s~~~~~~~~~~-G-~~VIDlS~~fR~~~~-~~y~~ 112 (346)
T TIGR01850 58 EPI-------DEEEIAEDADVVFLALPHG---------------VSAELAPELLAA-G-VKVIDLSADFRLKDP-EVYEK 112 (346)
T ss_pred ecC-------CHHHhhcCCCEEEECCCch---------------HHHHHHHHHHhC-C-CEEEeCChhhhcCCh-hhhHH
Confidence 111 2334445899999876531 224455555554 3 678888888643321 11222
Q ss_pred cCCCCCChhhHHH-HHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCC---EEEEeeeeeccCCCCC
Q psy7542 219 TYPPPVSPHNVIE-KAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMP---CMILRPSIIIPIWKDP 292 (762)
Q Consensus 219 ~~~~p~~p~~~~~-~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glp---v~IvRPs~V~G~~~eP 292 (762)
.|..+....++++ ..=.++|-.-+.+....+-.-|+.|+.+=.++=.=+.+.. .+. ++|-=-+-+-|.++.+
T Consensus 113 ~y~~~~~~~~~~~~~~y~lPE~n~~~i~~~~iianPgC~~t~~~l~L~PL~~~~--~i~~~~i~v~~~sgvSGaG~~~ 188 (346)
T TIGR01850 113 WYGFEHAGPELLQEAVYGLPELHREEIKGARLIANPGCYPTATLLALAPLLKEG--LIDPTSIIVDAKSGVSGAGRKA 188 (346)
T ss_pred hcCCCCCChhhhcCceEECCccCHHHhCCCcEEEcCCcHHHHHHHHHHHHHHcC--CCCCCcEEEEEEEECcccCcCc
Confidence 2322211111110 0000111011122222233468889888777666554432 343 5555566666766554
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.15 Score=54.99 Aligned_cols=125 Identities=12% Similarity=0.060 Sum_probs=73.2
Q ss_pred hhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHH-----HH---hcChhHHHHHhhhhc
Q psy7542 54 RISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE-----EI---FQSPLYEALKKEQSE 124 (762)
Q Consensus 54 ~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~-----~l---l~~~~f~~l~~~~~~ 124 (762)
+-++-+++.+|+|.| .|.+|+.+++.|.+. |+ ++.+++...-..+...|.- ++ .....-+++++-+
T Consensus 20 e~Q~kL~~s~VlIvG-~GGLGs~va~~LA~a--GVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iN-- 94 (287)
T PRK08223 20 TEQQRLRNSRVAIAG-LGGVGGIHLLTLARL--GIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDIN-- 94 (287)
T ss_pred HHHHHHhcCCEEEEC-CCHHHHHHHHHHHHh--CCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHC--
Confidence 445667889999999 577999999999999 78 8888877543322222210 00 0000112222222
Q ss_pred ccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEe
Q psy7542 125 SAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVS 204 (762)
Q Consensus 125 ~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vS 204 (762)
..-+|+.+...++.. +..++++++|+|+.+.-... +..-..+-++|.+. + +.+|+.|
T Consensus 95 --P~v~V~~~~~~l~~~-------n~~~ll~~~DlVvD~~D~~~------------~~~r~~ln~~c~~~-~-iP~V~~~ 151 (287)
T PRK08223 95 --PELEIRAFPEGIGKE-------NADAFLDGVDVYVDGLDFFE------------FDARRLVFAACQQR-G-IPALTAA 151 (287)
T ss_pred --CCCEEEEEecccCcc-------CHHHHHhCCCEEEECCCCCc------------HHHHHHHHHHHHHc-C-CCEEEEe
Confidence 223466666666543 46778899999996542110 11123455677776 4 4677766
Q ss_pred CC
Q psy7542 205 TA 206 (762)
Q Consensus 205 Sa 206 (762)
..
T Consensus 152 ~~ 153 (287)
T PRK08223 152 PL 153 (287)
T ss_pred cc
Confidence 54
|
|
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.36 Score=55.25 Aligned_cols=122 Identities=9% Similarity=0.047 Sum_probs=75.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHc---CCC--cEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEE
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRT---CEN--VKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPI 134 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~---gp~--v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V 134 (762)
+.-+|.||||+|.||-+|+-.|.+- |++ +.+.+++.+.....++.-..++.+. .| + ....+.+.
T Consensus 122 ~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~-a~---------p-ll~~v~i~ 190 (452)
T cd05295 122 NPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDL-AF---------P-LLRGISVT 190 (452)
T ss_pred CceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHh-HH---------h-hcCCcEEE
Confidence 3467999999999999999988762 222 3677776643332222222232221 11 1 11234443
Q ss_pred EeecCCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCC-ccEEEEEeC
Q psy7542 135 NGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIH-LQLFVYVST 205 (762)
Q Consensus 135 ~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~-lk~fV~vSS 205 (762)
.+| .+.++++|+||-+|+..+- .+.-.+.++.|+.-.+.+.+...+... -.+++.+-|
T Consensus 191 ~~~-------------~ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~t 250 (452)
T cd05295 191 TDL-------------DVAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGR 250 (452)
T ss_pred ECC-------------HHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 222 2346899999999998653 345667899999999999888877632 134444444
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.3 Score=53.42 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=71.2
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc--EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV--KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v--~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|.|+||||.+|+.++..|+.. ++ ++.+++.. ......-.|.+. ....++....+|
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~--~~~~elvLiDi~-~a~g~alDL~~~----------------~~~~~i~~~~~~-- 59 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN--PLVSELALYDIV-NTPGVAADLSHI----------------NTPAKVTGYLGP-- 59 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCCcEEEEEecC-ccceeehHhHhC----------------CCcceEEEecCC--
Confidence 57999999999999999988877 43 78888776 211100011110 000111111111
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
+++.+.++++|+||-+||..+- .+.-.+.++.|+.-.+.+.+..++. +...++.+
T Consensus 60 --------~~~y~~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~viv 115 (310)
T cd01337 60 --------EELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILI 115 (310)
T ss_pred --------CchHHhcCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEE
Confidence 1344556899999999998653 4555678999999999999888876 44444443
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.061 Score=59.80 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=30.3
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
.++|+|+||||++|+.|++.|++. |.+++..+.++.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~-p~~el~~~~~s~ 38 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANH-PWFEVTALAASE 38 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcC-CCceEEEEEcCh
Confidence 368999999999999999998876 677888885553
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.29 Score=51.75 Aligned_cols=123 Identities=11% Similarity=0.095 Sum_probs=73.4
Q ss_pred hhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHH-----HH---hcChhHHHHHhhhhc
Q psy7542 54 RISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE-----EI---FQSPLYEALKKEQSE 124 (762)
Q Consensus 54 ~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~-----~l---l~~~~f~~l~~~~~~ 124 (762)
+-++-+++++|+|.|+ |.+|+.+++.|.+. |+ ++.+++...-..+...|.- ++ .....-+++++-.
T Consensus 25 ~~Q~~L~~~~VliiG~-GglGs~va~~La~~--Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~ln-- 99 (245)
T PRK05690 25 DGQEKLKAARVLVVGL-GGLGCAASQYLAAA--GVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARIN-- 99 (245)
T ss_pred HHHHHhcCCeEEEECC-CHHHHHHHHHHHHc--CCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHC--
Confidence 3456678899999997 99999999999998 78 8888877644333333310 00 0000112222222
Q ss_pred ccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEe
Q psy7542 125 SAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVS 204 (762)
Q Consensus 125 ~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vS 204 (762)
| .-+++.+...++ +++...+++++|+||.|... . ..-..+-++|.+. + +.+|+.+
T Consensus 100 p--~v~i~~~~~~i~-------~~~~~~~~~~~DiVi~~~D~------~--------~~r~~ln~~~~~~-~-ip~v~~~ 154 (245)
T PRK05690 100 P--HIAIETINARLD-------DDELAALIAGHDLVLDCTDN------V--------ATRNQLNRACFAA-K-KPLVSGA 154 (245)
T ss_pred C--CCEEEEEeccCC-------HHHHHHHHhcCCEEEecCCC------H--------HHHHHHHHHHHHh-C-CEEEEee
Confidence 1 234555544433 34577788999999988632 1 1112455777775 4 5677765
Q ss_pred CC
Q psy7542 205 TA 206 (762)
Q Consensus 205 Sa 206 (762)
+.
T Consensus 155 ~~ 156 (245)
T PRK05690 155 AI 156 (245)
T ss_pred ec
Confidence 54
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.34 Score=53.77 Aligned_cols=181 Identities=15% Similarity=0.120 Sum_probs=91.5
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEE-EeecCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPI-NGDVAV 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V-~GDl~~ 140 (762)
++|+|.||||++|+.+++.|.+. |++++.++.+..... +++.+.. .++..+ ..++.+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~-p~~elv~v~~~~~~g---~~l~~~~------------------~~~~~~~~~~~~~ 60 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNH-PEVEIVAVTSRSSAG---KPLSDVH------------------PHLRGLVDLVLEP 60 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcC-CCceEEEEECccccC---cchHHhC------------------cccccccCceeec
Confidence 68999999999999999999877 788877777632211 1121110 111111 112222
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccC
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTY 220 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~ 220 (762)
.+ +. ...++|+||-|.... ...++...|.+. + +++|=.|+.+-..+.. ..++.|
T Consensus 61 ~~------~~--~~~~vD~Vf~alP~~---------------~~~~~v~~a~~a-G-~~VID~S~~fR~~~~~-~~~~~y 114 (343)
T PRK00436 61 LD------PE--ILAGADVVFLALPHG---------------VSMDLAPQLLEA-G-VKVIDLSADFRLKDPE-VYEKWY 114 (343)
T ss_pred CC------HH--HhcCCCEEEECCCcH---------------HHHHHHHHHHhC-C-CEEEECCcccCCCCch-hhHHhc
Confidence 22 11 346799998765430 113444455444 3 5788888886543211 122223
Q ss_pred CCCCChhhHHHH-HHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCC---EEEEeeeeeccCCCCC
Q psy7542 221 PPPVSPHNVIEK-AELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMP---CMILRPSIIIPIWKDP 292 (762)
Q Consensus 221 ~~p~~p~~~~~~-~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glp---v~IvRPs~V~G~~~eP 292 (762)
..|....++... .=.++|-.-+.+....+-.-|+.|+.+=.++=.=+.+.. .+. ++|-=..-+-|.++.+
T Consensus 115 ~~~~~~~~~~~~~~~~lpe~~~~~i~~~~iIanPgC~~t~~~l~L~PL~~~~--~i~~~~i~v~~~~g~SGaG~~~ 188 (343)
T PRK00436 115 GFEHAAPELLKEAVYGLPELNREEIKGARLIANPGCYPTASLLALAPLLKAG--LIDPDSIIIDAKSGVSGAGRKA 188 (343)
T ss_pred CCCCCCchhhcCceeecCccCHHHhcCCCEEECCCCHHHHHHHHHHHHHHcC--CCCCCCEEEEEEEecccCCCCc
Confidence 222111100000 000111111122222333468899888777766665532 343 6666666666766554
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.21 Score=47.45 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=67.1
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHH--------HHHHhcChhHHHHHhhhhcccccCCe
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRER--------LEEIFQSPLYEALKKEQSESAIFEKV 131 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eR--------l~~ll~~~~f~~l~~~~~~~~~~~kV 131 (762)
.++|+|.| .|.+|+.+++.|.+. |+ ++.+.+...-..+-..| +-+.....+-+.+++. ...-++
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~~--Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~----np~~~v 74 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLARS--GVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEI----NPDVEV 74 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHH--TTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHH----STTSEE
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHh--CCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHh----cCceee
Confidence 57899999 688999999999999 78 88888764321111001 0000000001111111 123456
Q ss_pred EEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCC
Q psy7542 132 IPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA 206 (762)
Q Consensus 132 ~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSa 206 (762)
+.+..++. ++....+++++|+||.|... ......+-++|++. + +.+|+.++.
T Consensus 75 ~~~~~~~~-------~~~~~~~~~~~d~vi~~~d~--------------~~~~~~l~~~~~~~-~-~p~i~~~~~ 126 (135)
T PF00899_consen 75 EAIPEKID-------EENIEELLKDYDIVIDCVDS--------------LAARLLLNEICREY-G-IPFIDAGVN 126 (135)
T ss_dssp EEEESHCS-------HHHHHHHHHTSSEEEEESSS--------------HHHHHHHHHHHHHT-T--EEEEEEEE
T ss_pred eeeecccc-------cccccccccCCCEEEEecCC--------------HHHHHHHHHHHHHc-C-CCEEEEEee
Confidence 66666663 34677888899999988542 12223566788876 4 467877765
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.29 Score=53.93 Aligned_cols=120 Identities=15% Similarity=0.101 Sum_probs=72.2
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc-------EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeE
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV-------KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVI 132 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v-------~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~ 132 (762)
+.++|.|+||+|.+|..++..|+.. ++ ++.++++.+....++....++.... .....++.
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~--~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~-----------~~~~~~~~ 69 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASG--DMLGKDQPVILQLLEIPPALKALEGVVMELDDCA-----------FPLLAGVV 69 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhh--hhcCCCCccEEEEEecCCcccccceeehhhhhhh-----------hhhcCCcE
Confidence 3468999999999999999988875 33 5777777432111111111111100 00111222
Q ss_pred EEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccC-ccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 133 PINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVR-FDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 133 ~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~-f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
+..+ ++ +.++++|+||-+|+..+ ..++-.+.+..|+.-.+++.+..++......++.+-|
T Consensus 70 i~~~------------~y-~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 70 ITDD------------PN-VAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred EecC------------hH-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 2211 22 34589999999999754 3456667899999999999988888422344444433
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.18 Score=63.13 Aligned_cols=78 Identities=15% Similarity=0.208 Sum_probs=55.2
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcE-------------EEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhccc
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVK-------------IYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESA 126 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~-------------V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~ 126 (762)
+.++|+|.|| |++|+..++.|.+. +++. |.+.++.. ++.+++.+
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~------~~a~~la~--------------- 624 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYL------KDAKETVE--------------- 624 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCH------HHHHHHHH---------------
Confidence 4679999996 99999999999886 5544 55555432 22222211
Q ss_pred ccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccc
Q psy7542 127 IFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAAT 166 (762)
Q Consensus 127 ~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~ 166 (762)
...+++.+..|+.+.+ ++.++++++|+|+.|...
T Consensus 625 ~~~~~~~v~lDv~D~e------~L~~~v~~~DaVIsalP~ 658 (1042)
T PLN02819 625 GIENAEAVQLDVSDSE------SLLKYVSQVDVVISLLPA 658 (1042)
T ss_pred hcCCCceEEeecCCHH------HHHHhhcCCCEEEECCCc
Confidence 1135778899998765 788888889999998764
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.2 Score=52.23 Aligned_cols=123 Identities=13% Similarity=0.121 Sum_probs=71.0
Q ss_pred hhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHH-----HH---hcChhHHHHHhhhhc
Q psy7542 54 RISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE-----EI---FQSPLYEALKKEQSE 124 (762)
Q Consensus 54 ~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~-----~l---l~~~~f~~l~~~~~~ 124 (762)
+.++-+.+++|+|.| .|-+|+++++.|.+. |+ ++.+.+...-..+...|.. ++ .....-+++++-.
T Consensus 14 ~~q~~L~~~~VlivG-~GglGs~va~~La~~--Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-- 88 (228)
T cd00757 14 EGQEKLKNARVLVVG-AGGLGSPAAEYLAAA--GVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAIN-- 88 (228)
T ss_pred HHHHHHhCCcEEEEC-CCHHHHHHHHHHHHc--CCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhC--
Confidence 345567889999999 688999999999998 77 7777765432211111110 00 0000111222211
Q ss_pred ccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEe
Q psy7542 125 SAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVS 204 (762)
Q Consensus 125 ~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vS 204 (762)
| .-+++.+..+++ .+++..+++++|+||-|.... ..-..+-++|.+. + ..+|+.+
T Consensus 89 p--~~~i~~~~~~i~-------~~~~~~~~~~~DvVi~~~d~~--------------~~r~~l~~~~~~~-~-ip~i~~g 143 (228)
T cd00757 89 P--DVEIEAYNERLD-------AENAEELIAGYDLVLDCTDNF--------------ATRYLINDACVKL-G-KPLVSGA 143 (228)
T ss_pred C--CCEEEEecceeC-------HHHHHHHHhCCCEEEEcCCCH--------------HHHHHHHHHHHHc-C-CCEEEEE
Confidence 1 134555555543 346777888999999886531 1113466777775 4 4677876
Q ss_pred CC
Q psy7542 205 TA 206 (762)
Q Consensus 205 Sa 206 (762)
+.
T Consensus 144 ~~ 145 (228)
T cd00757 144 VL 145 (228)
T ss_pred ec
Confidence 64
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.16 Score=46.50 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=29.2
Q ss_pred CCCeEEEEEEEEEcCeEEEEEeehhhHHhhhh
Q psy7542 533 EKPYYVYVIHVRMFQQHYIVEKRYSELLSWHS 564 (762)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (762)
+.+=++|.|.|...++.|+|+++|.+|..|.+
T Consensus 24 ~~~e~~~~v~v~Cqgrsw~VkRSyEdfr~LD~ 55 (115)
T cd07298 24 ESKELVYLVQIACQGRSWIVKRSYEDFRVLDK 55 (115)
T ss_pred CCCCeEEEEEEEeCCCceEEEeeHHHHHHHHH
Confidence 44678999999999999999999999999987
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.13 Score=48.50 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=28.5
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEE-EEeCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIY-ILLRPK 97 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~-~LvR~~ 97 (762)
++|.|.|++|-+|+.+++.+++. +++++. ++.|..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-PGFELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-TTEEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CCcEEEEEEecCC
Confidence 47999999999999999999997 688544 445544
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.25 Score=55.45 Aligned_cols=121 Identities=14% Similarity=0.127 Sum_probs=68.6
Q ss_pred hhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHH-----H---HhcChhHHHHHhhhhccc
Q psy7542 56 SATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE-----E---IFQSPLYEALKKEQSESA 126 (762)
Q Consensus 56 ~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~-----~---ll~~~~f~~l~~~~~~~~ 126 (762)
++-+++++|+|.|+ |.+|+.++..|.+. |+ ++.++++..-..+...|.- + ......-+++++.. +
T Consensus 130 q~~l~~~~VlvvG~-GG~Gs~ia~~La~~--Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n--p- 203 (376)
T PRK08762 130 QRRLLEARVLLIGA-GGLGSPAALYLAAA--GVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN--P- 203 (376)
T ss_pred HHHHhcCcEEEECC-CHHHHHHHHHHHHc--CCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC--C-
Confidence 44567889999985 77999999999998 78 8888888632111111100 0 00000011122111 1
Q ss_pred ccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCC
Q psy7542 127 IFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA 206 (762)
Q Consensus 127 ~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSa 206 (762)
.-+++.+...+. .+....+++++|+||.|.... .. -..+-++|.+. + ..||+.++.
T Consensus 204 -~v~v~~~~~~~~-------~~~~~~~~~~~D~Vv~~~d~~------~~--------r~~ln~~~~~~-~-ip~i~~~~~ 259 (376)
T PRK08762 204 -DVQVEAVQERVT-------SDNVEALLQDVDVVVDGADNF------PT--------RYLLNDACVKL-G-KPLVYGAVF 259 (376)
T ss_pred -CCEEEEEeccCC-------hHHHHHHHhCCCEEEECCCCH------HH--------HHHHHHHHHHc-C-CCEEEEEec
Confidence 123344443333 335677788999999886431 11 12355777776 4 567887764
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.27 Score=51.45 Aligned_cols=123 Identities=11% Similarity=0.092 Sum_probs=71.4
Q ss_pred hhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHh-c-----C-----hhHHHHHhh
Q psy7542 54 RISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIF-Q-----S-----PLYEALKKE 121 (762)
Q Consensus 54 ~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll-~-----~-----~~f~~l~~~ 121 (762)
+.++-+++.+|+|.| .|.+|+.+++.|.+. |+ ++++++...-..+...|. .+ . . ..-++++.-
T Consensus 20 ~~q~~L~~~~VlIiG-~GGlGs~ia~~La~~--Gvg~i~lvD~D~ve~sNL~Rq--~l~~~~dvG~~~k~~~a~~~l~~~ 94 (231)
T PRK08328 20 EGQEKLKKAKVAVVG-VGGLGSPVAYYLAAA--GVGRILLIDEQTPELSNLNRQ--ILHWEEDLGKNPKPLSAKWKLERF 94 (231)
T ss_pred HHHHHHhCCcEEEEC-CCHHHHHHHHHHHHc--CCCEEEEEcCCccChhhhccc--cccChhhcCchHHHHHHHHHHHHh
Confidence 345667889999999 678999999999998 78 888887654332222221 10 0 0 000111111
Q ss_pred hhcccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEE
Q psy7542 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFV 201 (762)
Q Consensus 122 ~~~~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV 201 (762)
+ ..-+++.+.+.+ ++++...+++++|+||.|.-.. + .-..+-++|++. + ..+|
T Consensus 95 n----p~v~v~~~~~~~-------~~~~~~~~l~~~D~Vid~~d~~------~--------~r~~l~~~~~~~-~-ip~i 147 (231)
T PRK08328 95 N----SDIKIETFVGRL-------SEENIDEVLKGVDVIVDCLDNF------E--------TRYLLDDYAHKK-G-IPLV 147 (231)
T ss_pred C----CCCEEEEEeccC-------CHHHHHHHHhcCCEEEECCCCH------H--------HHHHHHHHHHHc-C-CCEE
Confidence 1 123444444444 3345677889999999875421 1 112344667775 4 4678
Q ss_pred EEeCCcc
Q psy7542 202 YVSTAYC 208 (762)
Q Consensus 202 ~vSSay~ 208 (762)
+.++...
T Consensus 148 ~g~~~g~ 154 (231)
T PRK08328 148 HGAVEGT 154 (231)
T ss_pred EEeeccC
Confidence 8777633
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.28 Score=54.66 Aligned_cols=123 Identities=13% Similarity=0.025 Sum_probs=72.1
Q ss_pred hhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHH-----HH---HhcChhHHHHHhhhhc
Q psy7542 54 RISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERL-----EE---IFQSPLYEALKKEQSE 124 (762)
Q Consensus 54 ~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl-----~~---ll~~~~f~~l~~~~~~ 124 (762)
+-++-+++.+|+|.|+ |.+|+.+++.|.+. |+ ++.+++...-..+...|. .+ ......-+++++.+
T Consensus 21 ~~q~~L~~~~VlivG~-GGlGs~~a~~La~~--Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n-- 95 (355)
T PRK05597 21 QGQQSLFDAKVAVIGA-GGLGSPALLYLAGA--GVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN-- 95 (355)
T ss_pred HHHHHHhCCeEEEECC-CHHHHHHHHHHHHc--CCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC--
Confidence 3456678899999995 88999999999998 88 888888764222111111 00 00000111222222
Q ss_pred ccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEe
Q psy7542 125 SAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVS 204 (762)
Q Consensus 125 ~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vS 204 (762)
| .-+++.+...++. +....+++++|+||.|... + ..-..+-++|.+. + ..||+.+
T Consensus 96 p--~v~v~~~~~~i~~-------~~~~~~~~~~DvVvd~~d~------~--------~~r~~~n~~c~~~-~-ip~v~~~ 150 (355)
T PRK05597 96 P--DVKVTVSVRRLTW-------SNALDELRDADVILDGSDN------F--------DTRHLASWAAARL-G-IPHVWAS 150 (355)
T ss_pred C--CcEEEEEEeecCH-------HHHHHHHhCCCEEEECCCC------H--------HHHHHHHHHHHHc-C-CCEEEEE
Confidence 2 2345555555543 3466778899999988642 1 1112245667775 4 4688877
Q ss_pred CC
Q psy7542 205 TA 206 (762)
Q Consensus 205 Sa 206 (762)
+.
T Consensus 151 ~~ 152 (355)
T PRK05597 151 IL 152 (355)
T ss_pred Ee
Confidence 65
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.37 Score=49.19 Aligned_cols=125 Identities=13% Similarity=0.158 Sum_probs=72.4
Q ss_pred hhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHH-------H---HHhcChhHHHHHhhh
Q psy7542 54 RISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERL-------E---EIFQSPLYEALKKEQ 122 (762)
Q Consensus 54 ~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl-------~---~ll~~~~f~~l~~~~ 122 (762)
..++-+++.+|+|.|++| +|+.+++.|.+. |+ +|++++...-..+...|. . +-.....-+++++-.
T Consensus 12 ~~q~~L~~s~VlviG~gg-lGsevak~L~~~--GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lN 88 (198)
T cd01485 12 EAQNKLRSAKVLIIGAGA-LGAEIAKNLVLA--GIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELN 88 (198)
T ss_pred HHHHHHhhCcEEEECCCH-HHHHHHHHHHHc--CCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHC
Confidence 345556788999999877 999999999998 88 888888754321111111 0 000001112233222
Q ss_pred hcccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEE
Q psy7542 123 SESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVY 202 (762)
Q Consensus 123 ~~~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~ 202 (762)
| .-+++.+..++.+. .++...+++++|+||-+-. +.... ..+-++|++. + ..||+
T Consensus 89 --p--~v~i~~~~~~~~~~-----~~~~~~~~~~~dvVi~~~d------~~~~~--------~~ln~~c~~~-~-ip~i~ 143 (198)
T cd01485 89 --P--NVKLSIVEEDSLSN-----DSNIEEYLQKFTLVIATEE------NYERT--------AKVNDVCRKH-H-IPFIS 143 (198)
T ss_pred --C--CCEEEEEecccccc-----hhhHHHHHhCCCEEEECCC------CHHHH--------HHHHHHHHHc-C-CCEEE
Confidence 2 23566665555421 2245667789999996632 12222 3355778876 4 46888
Q ss_pred EeCC
Q psy7542 203 VSTA 206 (762)
Q Consensus 203 vSSa 206 (762)
.++.
T Consensus 144 ~~~~ 147 (198)
T cd01485 144 CATY 147 (198)
T ss_pred EEee
Confidence 8775
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.99 E-value=1.3 Score=49.07 Aligned_cols=159 Identities=14% Similarity=0.198 Sum_probs=84.4
Q ss_pred CEEEEECCCChhHHHHHHHHHHcC-CCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTC-ENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~g-p~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
++|.|+||||++|..|++.|.++. |.+++..+....+.. +++ . ... ...++.+
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG---~~l------------------~--~~~---~~l~~~~ 58 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAG---HSV------------------P--FAG---KNLRVRE 58 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCC---Cee------------------c--cCC---cceEEee
Confidence 689999999999999999999753 334776665432210 001 0 011 1233333
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc-cccccc
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK-VLEEKT 219 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~-~i~E~~ 219 (762)
.+ . ..+ +++|+||-++.. .. ...++..+.+. ++ .+|=.|+++-..+.. .++|
T Consensus 59 ~~----~---~~~-~~vD~vFla~p~-------~~--------s~~~v~~~~~~-G~-~VIDlS~~fR~~~~pl~lPE-- 111 (336)
T PRK05671 59 VD----S---FDF-SQVQLAFFAAGA-------AV--------SRSFAEKARAA-GC-SVIDLSGALPSAQAPNVVPE-- 111 (336)
T ss_pred CC----h---HHh-cCCCEEEEcCCH-------HH--------HHHHHHHHHHC-CC-eEEECchhhcCCCCCEEecc--
Confidence 22 1 123 689999977642 01 12366666665 43 577778876432111 1111
Q ss_pred CCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCC-EEEEeeeeeccCCCC
Q psy7542 220 YPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMP-CMILRPSIIIPIWKD 291 (762)
Q Consensus 220 ~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glp-v~IvRPs~V~G~~~e 291 (762)
+..+.+....+..+-.-|+.|+.+=.++=.=+.... ++. ++|-=-.-|-|.++.
T Consensus 112 ----------------vn~~~i~~~~~~~iIAnPgC~~t~~~laL~PL~~~~--~~~~v~v~t~~~vSGaG~~ 166 (336)
T PRK05671 112 ----------------VNAERLASLAAPFLVSSPSASAVALAVALAPLKGLL--DIQRVQVTACLAVSSLGRE 166 (336)
T ss_pred ----------------cCHHHHccccCCCEEECCCcHHHHHHHHHHHHHHhc--CCCEEEEEEeecCcccCcc
Confidence 112222222223334568899888777666555332 333 444444555555544
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.9 Score=47.87 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=72.0
Q ss_pred hhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHH-----HH---hcChhHHHHHhhhhc
Q psy7542 54 RISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE-----EI---FQSPLYEALKKEQSE 124 (762)
Q Consensus 54 ~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~-----~l---l~~~~f~~l~~~~~~ 124 (762)
+-++-+++.+|+|.| .|.+|+.+++.|.+. |+ ++.+++...-..+...|.- ++ .....-+++++..
T Consensus 17 ~~q~~L~~~~VlvvG-~GglGs~va~~La~~--Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~in-- 91 (240)
T TIGR02355 17 DGQEALKASRVLIVG-LGGLGCAASQYLAAA--GVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQIN-- 91 (240)
T ss_pred HHHHHHhCCcEEEEC-cCHHHHHHHHHHHHc--CCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHC--
Confidence 345667889999999 688999999999998 78 8888887654332222210 00 0000111222222
Q ss_pred ccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEe
Q psy7542 125 SAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVS 204 (762)
Q Consensus 125 ~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vS 204 (762)
| .-+++.+...+ +.++..++++++|+||.+.-. . .....+-++|.+. + ..||+.+
T Consensus 92 p--~v~i~~~~~~i-------~~~~~~~~~~~~DlVvd~~D~------~--------~~r~~ln~~~~~~-~-ip~v~~~ 146 (240)
T TIGR02355 92 P--HIAINPINAKL-------DDAELAALIAEHDIVVDCTDN------V--------EVRNQLNRQCFAA-K-VPLVSGA 146 (240)
T ss_pred C--CcEEEEEeccC-------CHHHHHHHhhcCCEEEEcCCC------H--------HHHHHHHHHHHHc-C-CCEEEEE
Confidence 1 12344443333 344677888999999988632 1 1123355777775 4 4677766
Q ss_pred CC
Q psy7542 205 TA 206 (762)
Q Consensus 205 Sa 206 (762)
+.
T Consensus 147 ~~ 148 (240)
T TIGR02355 147 AI 148 (240)
T ss_pred ec
Confidence 54
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.87 Score=51.30 Aligned_cols=118 Identities=19% Similarity=0.104 Sum_probs=71.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc-E------EEEE--eCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV-K------IYIL--LRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEK 130 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v-~------V~~L--vR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~k 130 (762)
+.-+|.|+||+|.+|.+++-.|+.. ++ . +.++ ++.... ++....++.+.. + + ...+
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~--~l~~~~~ei~L~L~diD~~~~~--a~g~a~DL~d~a-~---------~-~~~~ 107 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASG--EVFGQDQPIALKLLGSERSKEA--LEGVAMELEDSL-Y---------P-LLRE 107 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhc--cccCCCCceEEEEeccCccchh--hhHHHHHHHHhh-h---------h-hcCc
Confidence 4568999999999999999999877 44 3 2223 333221 222222222110 0 1 1123
Q ss_pred eEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 131 VIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 131 V~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
+.+..+| + +.++++|+||-+|+..+- .++-.+.+..|+.-.+.+.....+..+...++.+-|
T Consensus 108 v~i~~~~------------y-~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs 170 (387)
T TIGR01757 108 VSIGIDP------------Y-EVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG 170 (387)
T ss_pred eEEecCC------------H-HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC
Confidence 3323222 2 335899999999998653 345567889999999999998888433444444433
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=93.26 E-value=1.4 Score=45.16 Aligned_cols=97 Identities=15% Similarity=0.244 Sum_probs=58.1
Q ss_pred hhhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHH----HH---hcChhHHHHHhhhhc
Q psy7542 53 DRISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE----EI---FQSPLYEALKKEQSE 124 (762)
Q Consensus 53 ~~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~----~l---l~~~~f~~l~~~~~~ 124 (762)
.+.++-++.++|+|.|+ |.+|+.++..|.+. |+ +|++.++..-..+...|.. ++ .....-+.++...
T Consensus 13 ~~~q~~L~~~~V~IvG~-GglGs~ia~~La~~--Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~in-- 87 (200)
T TIGR02354 13 PKIVQKLEQATVAICGL-GGLGSNVAINLARA--GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEIN-- 87 (200)
T ss_pred HHHHHHHhCCcEEEECc-CHHHHHHHHHHHHc--CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHC--
Confidence 34456678899999996 77999999999998 78 7888888622221122210 00 0000001111111
Q ss_pred ccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEc
Q psy7542 125 SAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHI 163 (762)
Q Consensus 125 ~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~ 163 (762)
..-+++.+..+++. +.+.++++++|+||-+
T Consensus 88 --p~~~i~~~~~~i~~-------~~~~~~~~~~DlVi~a 117 (200)
T TIGR02354 88 --PYTEIEAYDEKITE-------ENIDKFFKDADIVCEA 117 (200)
T ss_pred --CCCEEEEeeeeCCH-------hHHHHHhcCCCEEEEC
Confidence 12345555555543 4577888999999987
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.26 E-value=1 Score=49.21 Aligned_cols=117 Identities=18% Similarity=0.132 Sum_probs=74.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++|.|+|| |.+|+.++-.|+..+.+-.++++++....... --.++.... +.....+. +.+| .
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G--~a~DL~~~~-----------~~~~~~~~-i~~~-~-- 62 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEG--VALDLSHAA-----------APLGSDVK-ITGD-G-- 62 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccc--hhcchhhcc-----------hhccCceE-EecC-C--
Confidence 47999999 99999999999877433378888887332211 111111100 11112222 2222 1
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCcc-ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFD-DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~-~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
++ ..++++|+|+=+||..+-. +.-.+.++.|..-.+.+.+...+. ....++.|=|
T Consensus 63 -------~y-~~~~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~-~~d~ivlVvt 118 (313)
T COG0039 63 -------DY-EDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKY-APDAIVLVVT 118 (313)
T ss_pred -------Ch-hhhcCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCeEEEEec
Confidence 11 2357899999999987643 455678999999999998888776 4466666655
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.58 Score=56.77 Aligned_cols=127 Identities=8% Similarity=0.015 Sum_probs=75.1
Q ss_pred hhhhccCCCEEEEECCCChhHHHHHHHHHHcCCC-c-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhh-----hhccc
Q psy7542 54 RISATLEHKNIFITGASGFVGKVLLEKILRTCEN-V-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKE-----QSESA 126 (762)
Q Consensus 54 ~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~-v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~-----~~~~~ 126 (762)
.-++-+++.+|+|.|+ | +|+++++.|.+. | + ++++.+...-..+...|+ ++...-....|.+ -.+-+
T Consensus 100 ~~Q~~L~~~~V~IvG~-G-lGs~~a~~Lara--GvvG~l~lvD~D~ve~sNLnRq--~~~~~diG~~Kv~~a~~~l~~in 173 (722)
T PRK07877 100 EEQERLGRLRIGVVGL-S-VGHAIAHTLAAE--GLCGELRLADFDTLELSNLNRV--PAGVFDLGVNKAVVAARRIAELD 173 (722)
T ss_pred HHHHHHhcCCEEEEEe-c-HHHHHHHHHHHc--cCCCeEEEEcCCEEcccccccc--cCChhhcccHHHHHHHHHHHHHC
Confidence 3455677899999999 8 999999999999 6 3 788887765544445553 1110000111110 00011
Q ss_pred ccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCC
Q psy7542 127 IFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA 206 (762)
Q Consensus 127 ~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSa 206 (762)
..-+|+.+...++ ++.+.++++++|+|+.|.= |+..-..+-++|.+. + ..+|+.++.
T Consensus 174 p~i~v~~~~~~i~-------~~n~~~~l~~~DlVvD~~D--------------~~~~R~~ln~~a~~~-~-iP~i~~~~~ 230 (722)
T PRK07877 174 PYLPVEVFTDGLT-------EDNVDAFLDGLDVVVEECD--------------SLDVKVLLREAARAR-R-IPVLMATSD 230 (722)
T ss_pred CCCEEEEEeccCC-------HHHHHHHhcCCCEEEECCC--------------CHHHHHHHHHHHHHc-C-CCEEEEcCC
Confidence 1234555555444 4578899999999998853 111112344667765 4 457777765
Q ss_pred ccc
Q psy7542 207 YCH 209 (762)
Q Consensus 207 y~~ 209 (762)
.+.
T Consensus 231 ~g~ 233 (722)
T PRK07877 231 RGL 233 (722)
T ss_pred CCC
Confidence 443
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=93.22 E-value=1.5 Score=41.93 Aligned_cols=115 Identities=12% Similarity=0.118 Sum_probs=64.9
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHH----HHhcCh----hHHHHHhhhhcccccCCeEE
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE----EIFQSP----LYEALKKEQSESAIFEKVIP 133 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~----~ll~~~----~f~~l~~~~~~~~~~~kV~~ 133 (762)
+|+|.|+ |-+|+.+++.|.+. ++ ++.+++...-..+...|.. +-...+ .-++++... | .-+++.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~--Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~--p--~v~i~~ 73 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARS--GVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN--P--GVNVTA 73 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHC--CCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC--C--CcEEEE
Confidence 4889995 99999999999998 77 7888776532221111110 000000 011111111 1 234555
Q ss_pred EEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCc
Q psy7542 134 INGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAY 207 (762)
Q Consensus 134 V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay 207 (762)
+..++... .....+++.|+||-|... ......+.++|++. + ..|+.+++..
T Consensus 74 ~~~~~~~~-------~~~~~~~~~diVi~~~d~--------------~~~~~~l~~~~~~~-~-i~~i~~~~~g 124 (143)
T cd01483 74 VPEGISED-------NLDDFLDGVDLVIDAIDN--------------IAVRRALNRACKEL-G-IPVIDAGGLG 124 (143)
T ss_pred EeeecChh-------hHHHHhcCCCEEEECCCC--------------HHHHHHHHHHHHHc-C-CCEEEEcCCC
Confidence 55554432 235667899999988653 12234567888886 3 4677777653
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.16 Score=55.15 Aligned_cols=90 Identities=14% Similarity=0.251 Sum_probs=56.4
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
..++|-|||||.|+.++|+|.++ +.+-.+-.|+. ....++...+. ...... +
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~--g~~~aLAgRs~---~kl~~l~~~LG-----------------~~~~~~--p---- 58 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLARE--GLTAALAGRSS---AKLDALRASLG-----------------PEAAVF--P---- 58 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHc--CCchhhccCCH---HHHHHHHHhcC-----------------cccccc--C----
Confidence 35899999999999999999999 55444444532 12223322211 111111 1
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
+|. ++.++++++.+++|+||++...... .-|+++|..+
T Consensus 59 -~~~-p~~~~~~~~~~~VVlncvGPyt~~g-------------~plv~aC~~~ 96 (382)
T COG3268 59 -LGV-PAALEAMASRTQVVLNCVGPYTRYG-------------EPLVAACAAA 96 (382)
T ss_pred -CCC-HHHHHHHHhcceEEEeccccccccc-------------cHHHHHHHHh
Confidence 111 4578899999999999999753221 1367788776
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.84 Score=48.92 Aligned_cols=126 Identities=13% Similarity=0.144 Sum_probs=70.8
Q ss_pred hhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhc--------ChhHHHHHhhhhccc
Q psy7542 56 SATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQ--------SPLYEALKKEQSESA 126 (762)
Q Consensus 56 ~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~--------~~~f~~l~~~~~~~~ 126 (762)
.+.+++.+|+|.| .|.+|+++++.|.+. |+ +|.+++...-..+...|.--... ...-++++.-+ |
T Consensus 25 ~~kL~~s~VlVvG-~GGVGs~vae~Lar~--GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~IN--P- 98 (268)
T PRK15116 25 LQLFADAHICVVG-IGGVGSWAAEALART--GIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQIN--P- 98 (268)
T ss_pred HHHhcCCCEEEEC-cCHHHHHHHHHHHHc--CCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHC--C-
Confidence 4556888999999 688999999999999 77 88888765332222222100000 01112222222 1
Q ss_pred ccCCeEEEEeecCCCCCCCCHHHHHhhcC-CccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 127 IFEKVIPINGDVAVPDLGISAEDRQMLSE-TIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 127 ~~~kV~~V~GDl~~~~LGLs~~~l~~l~~-~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
..+|+.+..-+ +++....++. ++|+||.|.... ..-..+.++|++. + ..||.+..
T Consensus 99 -~~~V~~i~~~i-------~~e~~~~ll~~~~D~VIdaiD~~--------------~~k~~L~~~c~~~-~-ip~I~~gG 154 (268)
T PRK15116 99 -ECRVTVVDDFI-------TPDNVAEYMSAGFSYVIDAIDSV--------------RPKAALIAYCRRN-K-IPLVTTGG 154 (268)
T ss_pred -CcEEEEEeccc-------ChhhHHHHhcCCCCEEEEcCCCH--------------HHHHHHHHHHHHc-C-CCEEEECC
Confidence 22344443222 2335556554 699999876431 1223577888876 4 45666655
Q ss_pred CcccCC
Q psy7542 206 AYCHPK 211 (762)
Q Consensus 206 ay~~~~ 211 (762)
+.+..+
T Consensus 155 ag~k~d 160 (268)
T PRK15116 155 AGGQID 160 (268)
T ss_pred cccCCC
Confidence 554443
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.96 Score=49.59 Aligned_cols=113 Identities=12% Similarity=0.010 Sum_probs=69.9
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPD 142 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~ 142 (762)
+|.|+||+|.+|..++..|+..+-..++.++++.+....+ .++. +......+.... .+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a----~DL~---------------~~~~~~~i~~~~-~~-- 58 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVA----ADLS---------------HIPTAASVKGFS-GE-- 58 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEE----chhh---------------cCCcCceEEEec-CC--
Confidence 4889999999999999998877211278888876511111 0110 001111111100 00
Q ss_pred CCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 143 LGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 143 LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
+++.+.++++|+||-+|+..+. ...-.+.+..|+.-.+.+.+...+. ....++.+
T Consensus 59 -----~~~~~~~~daDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiiv 114 (312)
T TIGR01772 59 -----EGLENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILV 114 (312)
T ss_pred -----CchHHHcCCCCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEE
Confidence 0244567899999999997643 3455678899999999998888776 44444443
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=93.06 E-value=1.3 Score=50.68 Aligned_cols=111 Identities=16% Similarity=0.065 Sum_probs=71.4
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHc---C--CCc--EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccC
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRT---C--ENV--KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFE 129 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~---g--p~v--~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~ 129 (762)
.+-+.-+|.|+||+|.+|.+++-.|+.. + .++ +++++++...... ....++.+. . .....
T Consensus 96 ~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~--G~amDL~da-a----------~~~~~ 162 (444)
T PLN00112 96 SWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALE--GVAMELEDS-L----------YPLLR 162 (444)
T ss_pred cCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhH--HHHHHHHHh-h----------hhhcC
Confidence 3334568999999999999999998865 1 133 7888877654322 112222111 0 01112
Q ss_pred CeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHH
Q psy7542 130 KVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQ 193 (762)
Q Consensus 130 kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~ 193 (762)
++.+..+| + +.++++|+||-+||..+- .++-.+.++.|+.-.+.+.+...+
T Consensus 163 ~v~i~~~~------------y-e~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~ 214 (444)
T PLN00112 163 EVSIGIDP------------Y-EVFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNE 214 (444)
T ss_pred ceEEecCC------------H-HHhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222 2 235899999999998653 345567899999999999999888
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=93.01 E-value=1 Score=47.28 Aligned_cols=125 Identities=13% Similarity=0.081 Sum_probs=71.8
Q ss_pred hhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHH--------hcChhHHHHHhhhhccc
Q psy7542 56 SATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEI--------FQSPLYEALKKEQSESA 126 (762)
Q Consensus 56 ~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~l--------l~~~~f~~l~~~~~~~~ 126 (762)
++-+++.+|+|.| .|.+|+++++.|.+. |+ ++++++...-..+...|.--. .....-++++.-+ |
T Consensus 6 ~~~L~~~~VlVvG-~GGvGs~va~~Lar~--GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~in--P- 79 (231)
T cd00755 6 LEKLRNAHVAVVG-LGGVGSWAAEALARS--GVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDIN--P- 79 (231)
T ss_pred HHHHhCCCEEEEC-CCHHHHHHHHHHHHc--CCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHC--C-
Confidence 3456788999999 688999999999998 78 888887654322222221000 0001112222222 2
Q ss_pred ccCCeEEEEeecCCCCCCCCHHHHHhhc-CCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 127 IFEKVIPINGDVAVPDLGISAEDRQMLS-ETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 127 ~~~kV~~V~GDl~~~~LGLs~~~l~~l~-~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
.-+++.+...++. +....++ .+.|+||.|.-. +.....+.++|++. + ..||...+
T Consensus 80 -~~~V~~~~~~i~~-------~~~~~l~~~~~D~VvdaiD~--------------~~~k~~L~~~c~~~-~-ip~I~s~g 135 (231)
T cd00755 80 -ECEVDAVEEFLTP-------DNSEDLLGGDPDFVVDAIDS--------------IRAKVALIAYCRKR-K-IPVISSMG 135 (231)
T ss_pred -CcEEEEeeeecCH-------hHHHHHhcCCCCEEEEcCCC--------------HHHHHHHHHHHHHh-C-CCEEEEeC
Confidence 2456666655553 2345555 469999987532 22234577888886 4 45666655
Q ss_pred CcccC
Q psy7542 206 AYCHP 210 (762)
Q Consensus 206 ay~~~ 210 (762)
++...
T Consensus 136 ~g~~~ 140 (231)
T cd00755 136 AGGKL 140 (231)
T ss_pred CcCCC
Confidence 55433
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.24 Score=54.83 Aligned_cols=35 Identities=29% Similarity=0.457 Sum_probs=28.0
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENV-KIYILLRPK 97 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~ 97 (762)
+|+|.||||++|..|++.|.++++.+ ++..+.+..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~ 36 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDR 36 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccc
Confidence 48999999999999999988864444 777776653
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=92.94 E-value=2.4 Score=49.65 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=46.3
Q ss_pred ccCCCEEEEECCC-ChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 58 TLEHKNIFITGAS-GFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 58 ~~~gk~VLVTGAT-GFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
.|.++.++||||+ |.||..++++||.- +.+|++..-.- .++|++ .+..+-... ......+-+|..
T Consensus 393 ~y~d~valVTGA~~gSIaa~Vv~~LL~g--GAtVI~TTS~~----s~~r~e------fyr~LYa~~--a~~ga~LwvVpa 458 (866)
T COG4982 393 TYGDKVALVTGASKGSIAAAVVARLLAG--GATVIATTSRL----SEERTE------FYRSLYARH--ARYGAALWVVPA 458 (866)
T ss_pred CcccceEEEecCCCcchHHHHHHHHHhC--CcEEEEEcccc----cHHHHH------HHHHHHHhh--CCCCceEEEEec
Confidence 4788999999986 89999999999997 66666554322 123432 112222222 334567888888
Q ss_pred ecCCCC
Q psy7542 137 DVAVPD 142 (762)
Q Consensus 137 Dl~~~~ 142 (762)
++....
T Consensus 459 N~~Sys 464 (866)
T COG4982 459 NMGSYS 464 (866)
T ss_pred cccchh
Confidence 877654
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=92.87 E-value=1.5 Score=47.82 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=70.9
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchH-HHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSR-ERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~-eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
++|.|.|+ |.+|+.++..|+..+...+|++++|........ ..+.+.. ......+....+|
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~--------------~~~~~~~~i~~~~--- 62 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDAL--------------AFLPSPVKIKAGD--- 62 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHh--------------hccCCCeEEEcCC---
Confidence 47899995 999999999999883223889999865321111 1111110 0011222222221
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEe
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVS 204 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vS 204 (762)
++. +.++|+||.+++..+- .++-.+.+..|+.-.+.+.+..++. +...++.+=
T Consensus 63 ---------~~~-l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~-~~~~~vivv 116 (306)
T cd05291 63 ---------YSD-CKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKAS-GFDGIFLVA 116 (306)
T ss_pred ---------HHH-hCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEe
Confidence 233 4799999999998643 3344578889999999999988886 334444433
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.65 E-value=2.4 Score=46.52 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=70.2
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.++|.|+|| |.+|..++..|+.. ++ .|.++++......++ .+ ++.. .. ........+. +
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~--~~~~l~L~Di~~~~~~g~-~l-Dl~~---------~~--~~~~~~~~i~-~-- 64 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQK--NLGDVVLYDVIKGVPQGK-AL-DLKH---------FS--TLVGSNINIL-G-- 64 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHC--CCCeEEEEECCCccchhH-HH-HHhh---------hc--cccCCCeEEE-e--
Confidence 5679999997 99999999888777 54 788888765432211 11 1100 00 0001111111 1
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccE-EEEEe
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQL-FVYVS 204 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~-fV~vS 204 (762)
+ .+++ .++++|+||-+|+..+. .....+.+..|..-.+.+.+...+. ..+. ++.+|
T Consensus 65 ~--------~d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~-~p~a~vivvs 122 (319)
T PTZ00117 65 T--------NNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKY-CPNAFVICVT 122 (319)
T ss_pred C--------CCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 0 1355 45899999999987553 3445567888888777777777765 3344 44443
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=92.52 E-value=8.7 Score=42.12 Aligned_cols=111 Identities=10% Similarity=0.061 Sum_probs=69.9
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE-eecCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN-GDVAV 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~-GDl~~ 140 (762)
++|.|+|| |.+|..++..|+..+-..++.++++..... .....++.... +. .....+.. +|
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~--~g~a~Dl~~~~-----------~~-~~~~~v~~~~d--- 65 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKL--KGEAMDLQHGS-----------AF-LKNPKIEADKD--- 65 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHH--HHHHHHHHHhh-----------cc-CCCCEEEECCC---
Confidence 58999996 999999999998872212888888765321 11112221110 11 11112222 22
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEE
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFV 201 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV 201 (762)
++. ++++|+||-+|+..+- .++-.+.+..|+.-.+.+.+..++. ..+.++
T Consensus 66 ---------y~~-~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~v 116 (312)
T cd05293 66 ---------YSV-TANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAIL 116 (312)
T ss_pred ---------HHH-hCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEE
Confidence 443 5899999999997653 3445578899999999999888886 334333
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.7 Score=51.86 Aligned_cols=123 Identities=14% Similarity=0.150 Sum_probs=71.9
Q ss_pred hhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHH-----HH---hcChhHHHHHhhhhc
Q psy7542 54 RISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE-----EI---FQSPLYEALKKEQSE 124 (762)
Q Consensus 54 ~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~-----~l---l~~~~f~~l~~~~~~ 124 (762)
+-++-+++.+|+|.| .|.+|+.++..|.+. |+ +|.+.+...-..+...|.- ++ .....-.++++-.
T Consensus 34 ~~q~~l~~~~VliiG-~GglG~~v~~~La~~--Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n-- 108 (370)
T PRK05600 34 EQQERLHNARVLVIG-AGGLGCPAMQSLASA--GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ-- 108 (370)
T ss_pred HHHHHhcCCcEEEEC-CCHHHHHHHHHHHHc--CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC--
Confidence 345667888999999 578999999999998 77 8888887632222222210 00 0000111222222
Q ss_pred ccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEe
Q psy7542 125 SAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVS 204 (762)
Q Consensus 125 ~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vS 204 (762)
+ .-+++.+...++ ++....+++++|+||.|... + ..-..+-++|.+. + ..+|+.+
T Consensus 109 p--~v~i~~~~~~i~-------~~~~~~~~~~~DlVid~~Dn------~--------~~r~~in~~~~~~-~-iP~v~~~ 163 (370)
T PRK05600 109 P--DIRVNALRERLT-------AENAVELLNGVDLVLDGSDS------F--------ATKFLVADAAEIT-G-TPLVWGT 163 (370)
T ss_pred C--CCeeEEeeeecC-------HHHHHHHHhCCCEEEECCCC------H--------HHHHHHHHHHHHc-C-CCEEEEE
Confidence 1 234555555554 33567788999999988642 1 1112344667765 4 4577777
Q ss_pred CC
Q psy7542 205 TA 206 (762)
Q Consensus 205 Sa 206 (762)
..
T Consensus 164 ~~ 165 (370)
T PRK05600 164 VL 165 (370)
T ss_pred Ee
Confidence 65
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.61 Score=47.58 Aligned_cols=121 Identities=13% Similarity=0.181 Sum_probs=68.3
Q ss_pred hhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHH--------HHHHhcChhHHHHHhhhhcc
Q psy7542 55 ISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRER--------LEEIFQSPLYEALKKEQSES 125 (762)
Q Consensus 55 i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eR--------l~~ll~~~~f~~l~~~~~~~ 125 (762)
-++-+++++|+|.|++| +|+++++.|.+. |+ +|.+++...-..+...| +-+......-+++++-+ |
T Consensus 15 ~Q~~L~~s~VlIiG~gg-lG~evak~La~~--GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lN--p 89 (197)
T cd01492 15 AQKRLRSARILLIGLKG-LGAEIAKNLVLS--GIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALN--P 89 (197)
T ss_pred HHHHHHhCcEEEEcCCH-HHHHHHHHHHHc--CCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHC--C
Confidence 34566789999999766 999999999998 78 88888765322111111 00000001112232222 2
Q ss_pred cccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 126 AIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 126 ~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
. -+++++...+.+ .....++++|+||-+... .... ..+-++|++. ++ .|++.++
T Consensus 90 ~--v~i~~~~~~~~~--------~~~~~~~~~dvVi~~~~~------~~~~--------~~ln~~c~~~-~i-p~i~~~~ 143 (197)
T cd01492 90 R--VKVSVDTDDISE--------KPEEFFSQFDVVVATELS------RAEL--------VKINELCRKL-GV-KFYATGV 143 (197)
T ss_pred C--CEEEEEecCccc--------cHHHHHhCCCEEEECCCC------HHHH--------HHHHHHHHHc-CC-CEEEEEe
Confidence 2 345555554442 234556889999976431 2222 2344778876 44 5788777
Q ss_pred C
Q psy7542 206 A 206 (762)
Q Consensus 206 a 206 (762)
.
T Consensus 144 ~ 144 (197)
T cd01492 144 H 144 (197)
T ss_pred c
Confidence 5
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.35 Score=55.72 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=29.4
Q ss_pred cCCCEEEEECC----------------CChhHHHHHHHHHHcCCCcEEEEEeC
Q psy7542 59 LEHKNIFITGA----------------SGFVGKVLLEKILRTCENVKIYILLR 95 (762)
Q Consensus 59 ~~gk~VLVTGA----------------TGFLG~~LvekLL~~gp~v~V~~LvR 95 (762)
++|++||||+| ||-+|..|++.+..+ |.+|+++.-
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~--GA~VtlI~G 304 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAA--GAEVTLISG 304 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHC--CCcEEEEeC
Confidence 68999999986 789999999999999 555666653
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=1 Score=51.57 Aligned_cols=36 Identities=8% Similarity=0.170 Sum_probs=30.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
++|++|+|||++| +|...++.|++. |.+|.+..+..
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~--G~~V~~~d~~~ 38 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKL--GANVTVNDGKP 38 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHC--CCEEEEEcCCC
Confidence 4689999999988 999998888888 67788877654
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=92.42 E-value=1.2 Score=44.41 Aligned_cols=116 Identities=17% Similarity=0.123 Sum_probs=64.3
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHH----HH---hcChhHHHHHhhhhcccccCCeEEE
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE----EI---FQSPLYEALKKEQSESAIFEKVIPI 134 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~----~l---l~~~~f~~l~~~~~~~~~~~kV~~V 134 (762)
+|+|.| .|-+|+.+++.|.+. ++ +|.+.+...-..+...|.. ++ .....-.++++-. ..-+++.+
T Consensus 1 ~VlViG-~GglGs~ia~~La~~--Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~ln----p~v~i~~~ 73 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARS--GVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREIN----PFVKIEAI 73 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHc--CCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHC----CCCEEEEE
Confidence 488999 588999999999998 78 7888888652221111111 00 0000011111111 22345556
Q ss_pred EeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCc
Q psy7542 135 NGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAY 207 (762)
Q Consensus 135 ~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay 207 (762)
...+.. +...++++++|+||.|... . ..-..+.+.|.+..+ ..||+.+...
T Consensus 74 ~~~~~~-------~~~~~~l~~~DlVi~~~d~------~--------~~r~~i~~~~~~~~~-ip~i~~~~~~ 124 (174)
T cd01487 74 NIKIDE-------NNLEGLFGDCDIVVEAFDN------A--------ETKAMLAESLLGNKN-KPVVCASGMA 124 (174)
T ss_pred EeecCh-------hhHHHHhcCCCEEEECCCC------H--------HHHHHHHHHHHHHCC-CCEEEEehhh
Confidence 555543 3567788999999988422 1 111235566655423 4577665443
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=92.34 E-value=1.7 Score=47.56 Aligned_cols=113 Identities=13% Similarity=0.136 Sum_probs=72.9
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCc--EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccc-cCCeEEEEeecC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENV--KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAI-FEKVIPINGDVA 139 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v--~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~-~~kV~~V~GDl~ 139 (762)
+|.|.|+ |.+|..++..|+.. +. ++.+++...... +....++... . +.. ..++.+..+|
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~--~~~~elvL~Di~~~~a--~g~a~DL~~~---------~--~~~~~~~~~i~~~~-- 62 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALAL--GLFSEIVLIDVNEGVA--EGEALDFHHA---------T--ALTYSTNTKIRAGD-- 62 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhc--CCCCEEEEEeCCcchh--hHHHHHHHhh---------h--ccCCCCCEEEEECC--
Confidence 4788997 99999999999887 44 788888754321 1222222111 0 111 1234444444
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCcc-cc--HHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFD-DY--MQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~-~~--l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
++ .++++|+||-+|+..+-. ++ -.+.+..|+.-.+.+.+..++. +...++.+-|
T Consensus 63 ----------y~-~~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~-~p~~i~ivvs 119 (307)
T cd05290 63 ----------YD-DCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV-TKEAVIILIT 119 (307)
T ss_pred ----------HH-HhCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEec
Confidence 22 357999999999986542 33 3578899999999999988887 4555555554
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=92.30 E-value=2.8 Score=44.58 Aligned_cols=105 Identities=13% Similarity=0.072 Sum_probs=66.2
Q ss_pred EEEECCCChhHHHHHHHHHHcC--CCcEEEEEeCCCCCcch-HHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 64 IFITGASGFVGKVLLEKILRTC--ENVKIYILLRPKKNKNS-RERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 64 VLVTGATGFLG~~LvekLL~~g--p~v~V~~LvR~~~~~~~-~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
|.|.||+|.+|..++..|+..+ ...+|.++++....... ...+++... .. ....+...+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~--------------~~-~~~~i~~~~--- 62 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVE--------------PL-ADIKVSITD--- 62 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhh--------------hc-cCcEEEECC---
Confidence 5689999999999999999883 22488888886532211 111111110 00 111221111
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCcc-ccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFD-DYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~-~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
++.+.++++|+||-+|+..+.. ..-......|+.-.+.+.+..++.
T Consensus 63 --------d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~ 109 (263)
T cd00650 63 --------DPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKY 109 (263)
T ss_pred --------chHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678999999999876543 233456777888888888888775
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.74 Score=52.07 Aligned_cols=124 Identities=10% Similarity=0.052 Sum_probs=72.0
Q ss_pred hhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHH-----HH---hcChhHHHHHhhhhc
Q psy7542 54 RISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE-----EI---FQSPLYEALKKEQSE 124 (762)
Q Consensus 54 ~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~-----~l---l~~~~f~~l~~~~~~ 124 (762)
+-++.+++.+|+|.| .|.+|+.++..|.+. |+ +|.+++...-..+...|.- ++ .....-+++++.+
T Consensus 35 ~~q~~L~~~~VlviG-~GGlGs~va~~La~~--Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n-- 109 (392)
T PRK07878 35 DGQKRLKNARVLVIG-AGGLGSPTLLYLAAA--GVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEIN-- 109 (392)
T ss_pred HHHHHHhcCCEEEEC-CCHHHHHHHHHHHHc--CCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhC--
Confidence 345667889999999 578999999999998 77 8888776543222222210 00 0000111222222
Q ss_pred ccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEe
Q psy7542 125 SAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVS 204 (762)
Q Consensus 125 ~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vS 204 (762)
| .-+++.+...++. +....+++++|+||.|... ...-..+-++|.+. + +.||+.+
T Consensus 110 p--~v~i~~~~~~i~~-------~~~~~~~~~~D~Vvd~~d~--------------~~~r~~ln~~~~~~-~-~p~v~~~ 164 (392)
T PRK07878 110 P--LVNVRLHEFRLDP-------SNAVELFSQYDLILDGTDN--------------FATRYLVNDAAVLA-G-KPYVWGS 164 (392)
T ss_pred C--CcEEEEEeccCCh-------hHHHHHHhcCCEEEECCCC--------------HHHHHHHHHHHHHc-C-CCEEEEE
Confidence 1 2345555555543 3466778899999987532 11112355677776 4 4688887
Q ss_pred CCc
Q psy7542 205 TAY 207 (762)
Q Consensus 205 Say 207 (762)
+..
T Consensus 165 ~~g 167 (392)
T PRK07878 165 IYR 167 (392)
T ss_pred ecc
Confidence 763
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.45 Score=52.82 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=29.0
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcC-CCcEEEEEeCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTC-ENVKIYILLRP 96 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~g-p~v~V~~LvR~ 96 (762)
+..+|+|.||||++|..|++.|.+++ |.+++..+...
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~ 43 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASA 43 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEcc
Confidence 45789999999999999999998864 34477666544
|
|
| >KOG0905|consensus | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.19 Score=61.78 Aligned_cols=97 Identities=24% Similarity=0.350 Sum_probs=73.9
Q ss_pred ccceeeecCCCCeEEEEEEEEEcCe--EEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchh
Q psy7542 524 VSGYRLIECEKPYYVYVIHVRMFQQ--HYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKY 601 (762)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (762)
|-+++..-.....|.|+|+|.-.++ .-.+.|-|.||-.+|+ +++..+
T Consensus 1380 v~~f~K~~~pnK~YmYvveV~r~n~~e~s~i~RsF~EF~ElH~-----------------------------KL~~~F-- 1428 (1639)
T KOG0905|consen 1380 VLKFEKHYSPNKIYMYVVEVTRENQAEPSFIFRSFEEFQELHN-----------------------------KLRARF-- 1428 (1639)
T ss_pred EEEeeeeccCCceEEEEEEEEecCCCCchHHHHhHHHHHHHHH-----------------------------HHHHhC--
Confidence 3334433344567899999987666 3456899999999999 666665
Q ss_pred hhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCc--CCCCChhHHHHHHHHHHHHHHHHHhcCCC
Q psy7542 602 FIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKK--IRSNQPKVLDERRHLLEIYLKEMFKFGPS 679 (762)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (762)
+....|+||..- -|+|-..|-++|+..|..||+.+|...+.
T Consensus 1429 -------------------------------------p~~~Lp~fP~~~~~grsnikaVA~kR~~~ln~yl~~L~nas~E 1471 (1639)
T KOG0905|consen 1429 -------------------------------------PSMKLPSFPHRIHLGRSNIKAVAEKRIIELNKYLISLFNASDE 1471 (1639)
T ss_pred -------------------------------------ccccCCCCCceeeecccchhHHHHHHHHHHHHHHHHHhcCCch
Confidence 445889999875 38888899999999999999999987776
Q ss_pred h---HHHHhhhC
Q psy7542 680 R---NQVLAFLG 688 (762)
Q Consensus 680 ~---~~~~~~~~ 688 (762)
. .-|..|+.
T Consensus 1472 Va~cDlVyTFFh 1483 (1639)
T KOG0905|consen 1472 VAHCDLVYTFFH 1483 (1639)
T ss_pred hhccceeeeeec
Confidence 5 56666653
|
|
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=91.91 E-value=1 Score=42.84 Aligned_cols=88 Identities=24% Similarity=0.298 Sum_probs=50.1
Q ss_pred EEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHh-------cChhHHHHHhhhhcccccCCeEEEE
Q psy7542 64 IFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIF-------QSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 64 VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll-------~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
|.|.|+||.||+..++-+.+. |+- +|++|.-.++-....+..++.. +...++.++... +.....+++..
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~-~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~--~~~~~~~~v~~ 77 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKH-PDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKAL--PSKGPGIEVLS 77 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHC-TTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHH--HHTTSSSEEEE
T ss_pred CEEEcCCcHHHHHHHHHHHhC-CCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHh--hhcCCCCEEEe
Confidence 678999999999999887776 655 9999987544322222222221 011233333332 22234566666
Q ss_pred eecCCCCCCCCHHHHHhhcC--CccEEEEcc
Q psy7542 136 GDVAVPDLGISAEDRQMLSE--TIHIVYHIA 164 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l~~--~vDiViH~A 164 (762)
|+ +.+.++++ ++|+|+...
T Consensus 78 G~----------~~l~~~~~~~~~D~vv~Ai 98 (129)
T PF02670_consen 78 GP----------EGLEELAEEPEVDIVVNAI 98 (129)
T ss_dssp SH----------HHHHHHHTHTT-SEEEE--
T ss_pred Ch----------HHHHHHhcCCCCCEEEEeC
Confidence 64 34666655 789998653
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.83 Score=41.68 Aligned_cols=33 Identities=15% Similarity=0.367 Sum_probs=29.3
Q ss_pred CCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhh
Q psy7542 532 CEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHS 564 (762)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (762)
++..-.+|.|.|...++.|+|++.|.+|..+.+
T Consensus 22 ~~~k~~~~~v~V~cqg~sW~VkRSyEdfr~LD~ 54 (114)
T cd07278 22 NSGKELVYLVQVQCQGKSWLVKRSYDDFRMLDK 54 (114)
T ss_pred CCCCceEEEEEEEeCCcceEEEeeHHHHHHHHH
Confidence 344567999999999999999999999999887
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.91 Score=51.32 Aligned_cols=123 Identities=12% Similarity=0.065 Sum_probs=72.5
Q ss_pred hhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHH-----HHH---hcChhHHHHHhhhhc
Q psy7542 54 RISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERL-----EEI---FQSPLYEALKKEQSE 124 (762)
Q Consensus 54 ~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl-----~~l---l~~~~f~~l~~~~~~ 124 (762)
+-++-++..+|+|.| .|.+|+.+++.|.+. |+ ++.+.+...-..+...|. .++ .....-+++++.+
T Consensus 31 ~~q~~L~~~~VlivG-~GGlG~~va~~La~~--Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n-- 105 (390)
T PRK07411 31 EGQKRLKAASVLCIG-TGGLGSPLLLYLAAA--GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN-- 105 (390)
T ss_pred HHHHHHhcCcEEEEC-CCHHHHHHHHHHHHc--CCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC--
Confidence 345667889999999 577999999999998 78 888877654332222221 000 0001112222222
Q ss_pred ccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEe
Q psy7542 125 SAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVS 204 (762)
Q Consensus 125 ~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vS 204 (762)
..-+|+.+...++.. ....+++++|+||.|... +.. -..+-++|.+. + +.+|+.+
T Consensus 106 --p~v~v~~~~~~~~~~-------~~~~~~~~~D~Vvd~~d~------~~~--------r~~ln~~~~~~-~-~p~v~~~ 160 (390)
T PRK07411 106 --PYCQVDLYETRLSSE-------NALDILAPYDVVVDGTDN------FPT--------RYLVNDACVLL-N-KPNVYGS 160 (390)
T ss_pred --CCCeEEEEecccCHH-------hHHHHHhCCCEEEECCCC------HHH--------HHHHHHHHHHc-C-CCEEEEE
Confidence 224566666665543 456778899999988642 111 12234666665 3 5678777
Q ss_pred CC
Q psy7542 205 TA 206 (762)
Q Consensus 205 Sa 206 (762)
..
T Consensus 161 ~~ 162 (390)
T PRK07411 161 IF 162 (390)
T ss_pred Ec
Confidence 65
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=91.70 E-value=1.5 Score=50.21 Aligned_cols=72 Identities=25% Similarity=0.346 Sum_probs=52.2
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|+|.|+ |.+|..+++.|.+. +..|+++.|.. ++++.+.+ ...+.++.||.+++
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~--g~~v~vid~~~------~~~~~~~~----------------~~~~~~~~gd~~~~ 55 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGE--NNDVTVIDTDE------ERLRRLQD----------------RLDVRTVVGNGSSP 55 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhC--CCcEEEEECCH------HHHHHHHh----------------hcCEEEEEeCCCCH
Confidence 57999997 99999999999987 66778887753 22222110 13578899998875
Q ss_pred CCCCCHHHHHhh-cCCccEEEEcc
Q psy7542 142 DLGISAEDRQML-SETIHIVYHIA 164 (762)
Q Consensus 142 ~LGLs~~~l~~l-~~~vDiViH~A 164 (762)
. .+..+ ++++|.||-+.
T Consensus 56 ~------~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 56 D------VLREAGAEDADLLIAVT 73 (453)
T ss_pred H------HHHHcCCCcCCEEEEec
Confidence 5 67766 77899888554
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.40 E-value=3.9 Score=45.62 Aligned_cols=104 Identities=12% Similarity=0.171 Sum_probs=67.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc--EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV--KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v--~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|.|+|+ |.+|+.++..|+.. +. ++.+++...... +....++... ......+.+ .++ .
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~--~l~~el~LiDi~~~~~--~g~a~DL~~~------------~~~~~~~~i-~~~-~ 98 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQ--DLADELALVDVNPDKL--RGEMLDLQHA------------AAFLPRTKI-LAS-T 98 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhC--CCCCEEEEEeCCCchh--hHHHHHHHhh------------hhcCCCCEE-EeC-C
Confidence 69999996 99999999999887 44 788888854321 1111122111 111122222 221 0
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
+++. ++++|+||-+|+..+- .++-.+.+..|+.-.+.+.+..++.
T Consensus 99 ---------dy~~-~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~ 144 (350)
T PLN02602 99 ---------DYAV-TAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKY 144 (350)
T ss_pred ---------CHHH-hCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333 5899999999997643 3444578888999888888888776
|
|
| >cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.64 Score=42.24 Aligned_cols=34 Identities=12% Similarity=0.348 Sum_probs=29.9
Q ss_pred cCCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhh
Q psy7542 531 ECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHS 564 (762)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (762)
.++..-.+|.|.|...++.|+|++.|.+|..+.+
T Consensus 20 ~~~~k~~~flv~V~cqgrsW~v~RSyEdfr~LD~ 53 (113)
T cd07299 20 SSSEKDLVFLVQVTCQGRSWMVLRSYEDFRTLDA 53 (113)
T ss_pred CCCCCceEEEEEEEecCcceEEeeeHHHHHHHHH
Confidence 3445578999999999999999999999999887
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=91.22 E-value=8.8 Score=41.92 Aligned_cols=115 Identities=16% Similarity=0.125 Sum_probs=69.9
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|.|.|+ |.+|..++..|+..+...+|.+++|..... .....++.... + .........+
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~--~g~a~dl~~~~-----------~-~~~~~~i~~~----- 60 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKA--EGEAMDLAHGT-----------P-FVKPVRIYAG----- 60 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhh--hhHHHHHHccc-----------c-ccCCeEEeeC-----
Confidence 47999997 999999999999883223788888864321 11111111110 0 1112222222
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccC-ccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVR-FDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~-f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
+++ .++++|+||-+|+... ...+..+....|+.-.+.+.+..++. +...++.+-|
T Consensus 61 -------d~~-~l~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~-~~~giiiv~t 116 (308)
T cd05292 61 -------DYA-DCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKY-APDAILLVVT 116 (308)
T ss_pred -------CHH-HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 233 3589999999998754 23455567888999888888887775 3344444433
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.88 Score=49.57 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=28.8
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
++|.|.| +|.+|..++..|++. +++|++.+|.+
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~--G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARA--GHEVRLWDADP 35 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHC--CCeeEEEeCCH
Confidence 4799999 999999999999998 66788888864
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.65 Score=46.25 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=30.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
++|++|+|.|+++.+|..+++.|.+. +++|++..|.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~--g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNR--NATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhC--CCEEEEEECC
Confidence 58999999999778899999999987 6678888774
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=90.62 E-value=1.7 Score=40.41 Aligned_cols=30 Identities=30% Similarity=0.596 Sum_probs=25.8
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEEE
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENVKIYIL 93 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v~V~~L 93 (762)
+|.|+|++|.+|..+++.|... +++++..+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-~~~~l~av 30 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-PDFEVVAL 30 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-CCceEEEE
Confidence 4789999999999999998886 67777776
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=90.50 E-value=2 Score=47.00 Aligned_cols=31 Identities=19% Similarity=0.519 Sum_probs=27.3
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEEEe
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENVKIYILL 94 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v~V~~Lv 94 (762)
+|.|.||||+.|..|++.|.+. |++++..+.
T Consensus 3 ~v~IvGasGy~G~el~rlL~~H-P~~el~~l~ 33 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGR-DDIELLSIA 33 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCC-CCeEEEEEe
Confidence 6999999999999999999888 888776664
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.36 E-value=3.9 Score=45.13 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=29.0
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
.++|+|.||||+.|..|++.|..+ |++++.+...+
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-p~ve~~~~ss~ 36 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-PDVELILISSR 36 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-CCeEEEEeech
Confidence 358999999999999999999988 89975555443
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.32 E-value=1.1 Score=54.20 Aligned_cols=125 Identities=16% Similarity=0.205 Sum_probs=72.2
Q ss_pred hhhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHH-----HH---hcChhHHHHHhhhh
Q psy7542 53 DRISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE-----EI---FQSPLYEALKKEQS 123 (762)
Q Consensus 53 ~~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~-----~l---l~~~~f~~l~~~~~ 123 (762)
.+.++-+++.+|+|.| .|.+|+.+++.|.+. |+ ++.+.+-..-..+...|.- ++ .....-+++++.+
T Consensus 35 ~e~Q~kL~~~~VlIvG-~GGlGs~va~~Lar~--GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~in- 110 (679)
T PRK14851 35 PGEQERLAEAKVAIPG-MGGVGGVHLITMVRT--GIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSIN- 110 (679)
T ss_pred HHHHHHHhcCeEEEEC-cCHHHHHHHHHHHHh--CCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhC-
Confidence 4456778899999999 688999999999999 77 7777775432222222210 00 0000011111111
Q ss_pred cccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 124 ESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 124 ~~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
..-+|+.+...++ ++++..+++++|+||.|.-...+ ..-..+.+.|.+. ++ .+|+.
T Consensus 111 ---P~~~I~~~~~~i~-------~~n~~~~l~~~DvVid~~D~~~~------------~~r~~l~~~c~~~-~i-P~i~~ 166 (679)
T PRK14851 111 ---PFLEITPFPAGIN-------ADNMDAFLDGVDVVLDGLDFFQF------------EIRRTLFNMAREK-GI-PVITA 166 (679)
T ss_pred ---CCCeEEEEecCCC-------hHHHHHHHhCCCEEEECCCCCcH------------HHHHHHHHHHHHC-CC-CEEEe
Confidence 2345666665554 44678888999999976522111 1112456678775 54 46665
Q ss_pred eC
Q psy7542 204 ST 205 (762)
Q Consensus 204 SS 205 (762)
+.
T Consensus 167 g~ 168 (679)
T PRK14851 167 GP 168 (679)
T ss_pred ec
Confidence 54
|
|
| >KOG4022|consensus | Back alignment and domain information |
|---|
Probab=89.89 E-value=22 Score=35.27 Aligned_cols=83 Identities=16% Similarity=0.287 Sum_probs=50.4
Q ss_pred chhHhhhHHHHHHHHHHHHc--CCCEEEEeeeeeccCCCCCCC-CCCCCCCCchHHHHHHhcCCeEEEeeCCCccccccc
Q psy7542 254 NGYAYTKCLCEGVVTEYMEA--GMPCMILRPSIIIPIWKDPLP-GWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLP 330 (762)
Q Consensus 254 n~Y~~SK~~aE~lv~~~~~~--glpv~IvRPs~V~G~~~eP~p-GWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~Vp 330 (762)
-+|+.+|+...++.+..+.+ |+|-...-..+.-=+.+.|+- -| ++ + .....|.|
T Consensus 141 IGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMNRKw---------------------MP-~-ADfssWTP 197 (236)
T KOG4022|consen 141 IGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMNRKW---------------------MP-N-ADFSSWTP 197 (236)
T ss_pred cchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCcccccc---------------------CC-C-CcccCccc
Confidence 47999999999999988775 888544433333223333321 11 11 1 22357999
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 331 VDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 331 VDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
...++..++.=.... .++..+....+...
T Consensus 198 L~fi~e~flkWtt~~--~RPssGsLlqi~Tt 226 (236)
T KOG4022|consen 198 LSFISEHFLKWTTET--SRPSSGSLLQITTT 226 (236)
T ss_pred HHHHHHHHHHHhccC--CCCCCCceEEEEec
Confidence 999998877644332 23445666666654
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.60 E-value=5.9 Score=43.62 Aligned_cols=115 Identities=16% Similarity=0.158 Sum_probs=69.9
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE-ee
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN-GD 137 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~-GD 137 (762)
+.++|.|.| +|.+|..++..++.. +. .|+++++.+....+ ++++ +... . ........+.. +
T Consensus 5 ~~~KI~IIG-aG~vG~~ia~~la~~--gl~~i~LvDi~~~~~~~-~~ld-~~~~---------~--~~~~~~~~I~~~~- 67 (321)
T PTZ00082 5 KRRKISLIG-SGNIGGVMAYLIVLK--NLGDVVLFDIVKNIPQG-KALD-ISHS---------N--VIAGSNSKVIGTN- 67 (321)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhC--CCCeEEEEeCCCchhhH-HHHH-HHhh---------h--hccCCCeEEEECC-
Confidence 457899999 599999999988876 65 78888876543211 1221 1110 0 11111222221 2
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEcccccCc-cc-----cHHHHHHHhHHHHHHHHHHHHHcCCcc-EEEEEe
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAATVRF-DD-----YMQTYVFLNTRGTRDMLNLSKQMIHLQ-LFVYVS 204 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~-----~l~~~~~~NV~GT~~LLelA~~~~~lk-~fV~vS 204 (762)
+++ .++++|+||.+|+..+- .. +..+.+..|+.-.+.+.+...+. ..+ .++.+|
T Consensus 68 -----------d~~-~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~-~p~a~~iv~s 128 (321)
T PTZ00082 68 -----------NYE-DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKY-CPNAFVIVIT 128 (321)
T ss_pred -----------CHH-HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEec
Confidence 243 35899999999986532 12 45667888988888888887775 334 344444
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.48 E-value=1 Score=48.70 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=30.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLR 95 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR 95 (762)
++|++|+|.|++|.+|+.++..|++. +.+|++..|
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~--gatVtv~~~ 191 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNA--NATVTICHS 191 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhC--CCEEEEEeC
Confidence 47999999999999999999999988 557777766
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.39 E-value=1.1 Score=48.56 Aligned_cols=35 Identities=34% Similarity=0.485 Sum_probs=30.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLR 95 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR 95 (762)
++|++|+|.|+++.+|+-++..|++. +.+|+++.+
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~--gatVtv~~s 190 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQK--NASVTILHS 190 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHC--CCeEEEEeC
Confidence 57999999999999999999999988 677777665
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=89.34 E-value=3 Score=49.32 Aligned_cols=105 Identities=11% Similarity=0.147 Sum_probs=67.3
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
+.++..+|+|.| .|-+|++++..|++. |+ +|.+++-..- .+...|+.++.+. . .+..+.+.+..
T Consensus 125 ~~qR~akVlVlG-~Gg~~s~lv~sL~~s--G~~~I~~vd~D~v-~SNlnRIgEl~e~------A-----~~~n~~v~v~~ 189 (637)
T TIGR03693 125 ELSRNAKILAAG-SGDFLTKLVRSLIDS--GFPRFHAIVTDAE-EHALDRIHELAEI------A-----EETDDALLVQE 189 (637)
T ss_pred hhhhcccEEEEe-cCchHHHHHHHHHhc--CCCcEEEEecccc-chhhhHHHHHHHH------H-----HHhCCCCceEe
Confidence 345778999999 667799999999999 66 6766654433 3445666554210 0 11234555555
Q ss_pred eecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 136 GDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
.|.+. .+++..+++..|+|++.+-... ......+-++|.+.
T Consensus 190 i~~~~------~~dl~ev~~~~DiVi~vsDdy~------------~~~Lr~lN~acvke 230 (637)
T TIGR03693 190 IDFAE------DQHLHEAFEPADWVLYVSDNGD------------IDDLHALHAFCKEE 230 (637)
T ss_pred ccCCc------chhHHHhhcCCcEEEEECCCCC------------hHHHHHHHHHHHHc
Confidence 55533 3489999999999999875322 12234566777775
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.23 E-value=2.7 Score=40.37 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=61.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++++|++.| +| -|..+++.|.+. ++.|.+++..+. +++... ...+.++.+|+.
T Consensus 16 ~~~kileIG-~G-fG~~vA~~L~~~--G~~ViaIDi~~~------aV~~a~-----------------~~~~~~v~dDlf 68 (134)
T PRK04148 16 KNKKIVELG-IG-FYFKVAKKLKES--GFDVIVIDINEK------AVEKAK-----------------KLGLNAFVDDLF 68 (134)
T ss_pred cCCEEEEEE-ec-CCHHHHHHHHHC--CCEEEEEECCHH------HHHHHH-----------------HhCCeEEECcCC
Confidence 457899999 56 788899999887 678899887643 222211 135789999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCcc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQ 198 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk 198 (762)
++++ .+-+++|.|+-+= +..+. ...++++|++. +..
T Consensus 69 ~p~~--------~~y~~a~liysir-------pp~el-------~~~~~~la~~~-~~~ 104 (134)
T PRK04148 69 NPNL--------EIYKNAKLIYSIR-------PPRDL-------QPFILELAKKI-NVP 104 (134)
T ss_pred CCCH--------HHHhcCCEEEEeC-------CCHHH-------HHHHHHHHHHc-CCC
Confidence 9984 3456889998542 11222 24688999987 444
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=88.98 E-value=4.9 Score=43.67 Aligned_cols=106 Identities=18% Similarity=0.089 Sum_probs=63.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++|.|.|| |.+|..++..+...+.. +|++.++.... .+....++.. .. ........+. + .
T Consensus 3 ~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~--~~~~~~dl~~-----~~------~~~~~~~~i~-~----~ 62 (307)
T PRK06223 3 KKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGV--PQGKALDIAE-----AA------PVEGFDTKIT-G----T 62 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCch--hHHHHHHHHh-----hh------hhcCCCcEEE-e----C
Confidence 68999998 99999999999887323 88999885432 1111111111 00 0000111111 1 0
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccC-ccccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVR-FDDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~-f~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
. +++. ++++|+||-+|+... ...+..+.+..|+.-.+.+++...+.
T Consensus 63 ~------d~~~-~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~ 109 (307)
T PRK06223 63 N------DYED-IAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKY 109 (307)
T ss_pred C------CHHH-HCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 2433 589999999988654 23344466777888888887777665
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.88 E-value=3.2 Score=46.64 Aligned_cols=123 Identities=16% Similarity=0.214 Sum_probs=68.9
Q ss_pred hhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhc-----C--hhHHHHHhhhhccc
Q psy7542 55 ISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQ-----S--PLYEALKKEQSESA 126 (762)
Q Consensus 55 i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~-----~--~~f~~l~~~~~~~~ 126 (762)
+++-+++.+|+|.| .|.+|+++++.|.+. ++ +|.+++-..-..+...|..-++. . +--+.++... ..
T Consensus 170 ~q~kL~~~~VaIVG-~GG~GS~Va~~LAR~--GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl--~~ 244 (393)
T PRK06153 170 LSAKLEGQRIAIIG-LGGTGSYILDLVAKT--PVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRY--SN 244 (393)
T ss_pred HHHHHhhCcEEEEc-CCccHHHHHHHHHHc--CCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHH--HH
Confidence 35667889999999 577899999999999 78 88887765322222222210000 0 0000111111 11
Q ss_pred ccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCC
Q psy7542 127 IFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA 206 (762)
Q Consensus 127 ~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSa 206 (762)
...++..+...+. ++.+. .+.++|+||-|.- |..+-..+.++|.+. ++ .+|.++-.
T Consensus 245 in~~I~~~~~~I~-------~~n~~-~L~~~DiV~dcvD--------------n~~aR~~ln~~a~~~-gI-P~Id~G~~ 300 (393)
T PRK06153 245 MRRGIVPHPEYID-------EDNVD-ELDGFTFVFVCVD--------------KGSSRKLIVDYLEAL-GI-PFIDVGMG 300 (393)
T ss_pred hCCeEEEEeecCC-------HHHHH-HhcCCCEEEEcCC--------------CHHHHHHHHHHHHHc-CC-CEEEeeec
Confidence 2235666555442 33444 4589999998863 223333456677765 43 46665543
|
|
| >KOG1494|consensus | Back alignment and domain information |
|---|
Probab=88.74 E-value=2.9 Score=44.65 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=71.9
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeC-CCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLR-PKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR-~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.+-+|.|.||.|.||+-|.- ||+.+|.+ ...+.+- ...+ |..|
T Consensus 27 ~~~KVAvlGAaGGIGQPLSL-LlK~np~Vs~LaLYDi~~~~G----------------------------------VaaD 71 (345)
T KOG1494|consen 27 RGLKVAVLGAAGGIGQPLSL-LLKLNPLVSELALYDIANTPG----------------------------------VAAD 71 (345)
T ss_pred CcceEEEEecCCccCccHHH-HHhcCcccceeeeeecccCCc----------------------------------cccc
Confidence 46789999999999999875 45565877 3332222 1111 1222
Q ss_pred cCCCC-----CCC-CHHHHHhhcCCccEEEEcccccCcc-ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCC
Q psy7542 138 VAVPD-----LGI-SAEDRQMLSETIHIVYHIAATVRFD-DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA 206 (762)
Q Consensus 138 l~~~~-----LGL-s~~~l~~l~~~vDiViH~AA~v~f~-~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSa 206 (762)
++.-+ .|- .++.++..++++|+|+--|+..+-. ..-++.+++|..-.+.|..++.++ -....|.+=|-
T Consensus 72 lSHI~T~s~V~g~~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~-cP~A~i~vIsN 146 (345)
T KOG1494|consen 72 LSHINTNSSVVGFTGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKC-CPNALILVISN 146 (345)
T ss_pred ccccCCCCceeccCChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhh-CccceeEeecC
Confidence 22111 111 1347889999999999999987643 445678999999999999888775 22444544443
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.69 E-value=1.3 Score=42.47 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=29.8
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
++++|+|+|+ |.+|..+++.|.+.+ ..+|++..|..
T Consensus 18 ~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~ 53 (155)
T cd01065 18 KGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTL 53 (155)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCH
Confidence 6789999997 999999999999873 24788888853
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.44 E-value=1.8 Score=53.80 Aligned_cols=125 Identities=14% Similarity=0.093 Sum_probs=72.1
Q ss_pred hhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHH-----HH---hcChhHHHHHhhhhc
Q psy7542 54 RISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE-----EI---FQSPLYEALKKEQSE 124 (762)
Q Consensus 54 ~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~-----~l---l~~~~f~~l~~~~~~ 124 (762)
+-++-+++.+|+|.| .|.+|+.+++.|.+. || ++.+.+-..-..+...|.- ++ .....-+++++-+
T Consensus 325 e~Q~kL~~srVlVvG-lGGlGs~ia~~LAra--GVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~IN-- 399 (989)
T PRK14852 325 AGQRRLLRSRVAIAG-LGGVGGIHLMTLART--GIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVN-- 399 (989)
T ss_pred HHHHHHhcCcEEEEC-CcHHHHHHHHHHHHc--CCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHC--
Confidence 345667889999999 677999999999999 78 8887776543322222210 00 0000111222111
Q ss_pred ccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEe
Q psy7542 125 SAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVS 204 (762)
Q Consensus 125 ~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vS 204 (762)
..-+|+.+...+ +++....+++++|+||.|.-...+ ...+.+.+.|.+. + ..||+.+
T Consensus 400 --P~v~I~~~~~~I-------~~en~~~fl~~~DiVVDa~D~~~~------------~~rr~l~~~c~~~-~-IP~I~ag 456 (989)
T PRK14852 400 --PFLDIRSFPEGV-------AAETIDAFLKDVDLLVDGIDFFAL------------DIRRRLFNRALEL-G-IPVITAG 456 (989)
T ss_pred --CCCeEEEEecCC-------CHHHHHHHhhCCCEEEECCCCccH------------HHHHHHHHHHHHc-C-CCEEEee
Confidence 223455554444 344678888999999976422111 1123566677765 4 4577766
Q ss_pred CC
Q psy7542 205 TA 206 (762)
Q Consensus 205 Sa 206 (762)
+.
T Consensus 457 ~~ 458 (989)
T PRK14852 457 PL 458 (989)
T ss_pred cc
Confidence 64
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.68 E-value=1.7 Score=49.46 Aligned_cols=76 Identities=20% Similarity=0.329 Sum_probs=52.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+.+++|+|.|+ |-+|+.++..|... ++ +|++..|.. +|.+++.+ .. ....++
T Consensus 179 l~~kkvlviGa-G~~a~~va~~L~~~--g~~~I~V~nRt~------~ra~~La~--------------~~-~~~~~~--- 231 (414)
T PRK13940 179 ISSKNVLIIGA-GQTGELLFRHVTAL--APKQIMLANRTI------EKAQKITS--------------AF-RNASAH--- 231 (414)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHc--CCCEEEEECCCH------HHHHHHHH--------------Hh-cCCeEe---
Confidence 57899999995 99999999999987 66 899999963 23333211 00 111111
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEcccccCc
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAATVRF 169 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f 169 (762)
..+++..++.++|+||+|-+...+
T Consensus 232 --------~~~~l~~~l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 232 --------YLSELPQLIKKADIIIAAVNVLEY 255 (414)
T ss_pred --------cHHHHHHHhccCCEEEECcCCCCe
Confidence 113567778899999999876543
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=87.68 E-value=2.2 Score=46.27 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=30.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKK 98 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~ 98 (762)
.++++|+|.|| |..+++++..|... ++ +|+++.|...
T Consensus 122 ~~~k~vlvlGa-GGaarAi~~~l~~~--g~~~i~i~nRt~~ 159 (288)
T PRK12749 122 IKGKTMVLLGA-GGASTAIGAQGAIE--GLKEIKLFNRRDE 159 (288)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHC--CCCEEEEEeCCcc
Confidence 36789999996 55599999999887 77 9999999753
|
|
| >KOG2528|consensus | Back alignment and domain information |
|---|
Probab=87.65 E-value=1.1 Score=50.36 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=42.4
Q ss_pred CCCCCCCCCCcCC-CCChhHHHHHHHHHHHHHHHHHhcCCCh--HHHHhhhCCC
Q psy7542 640 KFSTPSFPPKKIR-SNQPKVLDERRHLLEIYLKEMFKFGPSR--NQVLAFLGVN 690 (762)
Q Consensus 640 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 690 (762)
.++.|.+|-|.+. -....+++.||+.|..++..|-.+.-.. ..+..||..+
T Consensus 239 ~i~vp~Lpdkq~~gr~Ee~fi~~rr~~l~~wm~~~~~hpvlsq~evf~hFl~c~ 292 (490)
T KOG2528|consen 239 LIPVPPLPDKQVTGRFEEDFIEKRRKGLQWWMNHMCRHPVLSQCEVFQHFLTCP 292 (490)
T ss_pred cccCCCCCccccccchhHHHHHHHHHHHHHHHHHhhcchHhhhhHHHHHHHcCC
Confidence 4589999999874 4678899999999999999998765333 8889999886
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=87.28 E-value=3.9 Score=44.88 Aligned_cols=115 Identities=16% Similarity=0.190 Sum_probs=65.2
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHH-----HH---HhcChhHHHHHhhhhcccccCCeEE
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERL-----EE---IFQSPLYEALKKEQSESAIFEKVIP 133 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl-----~~---ll~~~~f~~l~~~~~~~~~~~kV~~ 133 (762)
+|||.|+ |.+|..+++.|... |+ +|.+++...-..+...|. ++ -.....-+.+++.. ..-+++.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~--Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lN----p~v~V~~ 73 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLT--GFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFN----PNVKIVA 73 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHh--cCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHC----CCCeEEE
Confidence 4899995 88999999999998 77 888877643222111111 00 00000112222222 2245677
Q ss_pred EEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCC
Q psy7542 134 INGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA 206 (762)
Q Consensus 134 V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSa 206 (762)
+.+++.+.. .-...+++.|+||.+.-. ...-..+-++|.+. + ..||...|.
T Consensus 74 ~~~~i~~~~------~~~~f~~~~DvVv~a~Dn--------------~~ar~~in~~c~~~-~-ip~I~~gt~ 124 (312)
T cd01489 74 YHANIKDPD------FNVEFFKQFDLVFNALDN--------------LAARRHVNKMCLAA-D-VPLIESGTT 124 (312)
T ss_pred EeccCCCcc------chHHHHhcCCEEEECCCC--------------HHHHHHHHHHHHHC-C-CCEEEEecC
Confidence 777777643 123566889999977432 22223455677765 3 457777665
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=87.13 E-value=1.3 Score=49.55 Aligned_cols=35 Identities=20% Similarity=0.437 Sum_probs=28.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcE---EEEEeCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVK---IYILLRPK 97 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~---V~~LvR~~ 97 (762)
++|.|.||||++|..|++.|++. +++. +..+..+.
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~-~~f~~~~l~~~ss~~ 39 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEE-NDFDLIEPVFFSTSQ 39 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhC-CCCCcCcEEEecchh
Confidence 47999999999999999988887 5664 66665543
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=86.85 E-value=2.1 Score=42.31 Aligned_cols=35 Identities=31% Similarity=0.435 Sum_probs=26.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLR 95 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR 95 (762)
++||+|+|.|.++.+|+-|...|+++ +..|.....
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~--~atVt~~h~ 68 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNK--GATVTICHS 68 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHT--T-EEEEE-T
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhC--CCeEEeccC
Confidence 58999999999999999999999998 666665443
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=86.80 E-value=11 Score=40.39 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=27.8
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLR 95 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR 95 (762)
++|.|.|++|-+|+.+++.+.+. +++++.+.+.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~-~~~elvav~d 34 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA-EGLQLVAAFE 34 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEe
Confidence 47999999999999999999887 7886666554
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=86.80 E-value=4.4 Score=42.58 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=66.1
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHH-----HH---HhcChhHHHHHhhhhcccccCCeEE
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERL-----EE---IFQSPLYEALKKEQSESAIFEKVIP 133 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl-----~~---ll~~~~f~~l~~~~~~~~~~~kV~~ 133 (762)
+|||.| .|.+|..+++.|... |+ ++.+++...-..+...|. .+ ......-+++++.. ..-+++.
T Consensus 1 kVlvvG-~GGlG~eilk~La~~--Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~n----p~v~i~~ 73 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALM--GFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRN----PNCKVVP 73 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHc--CCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHC----CCCEEEE
Confidence 488988 688999999999998 78 888888754332222221 00 00000111222222 2245667
Q ss_pred EEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCC
Q psy7542 134 INGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA 206 (762)
Q Consensus 134 V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSa 206 (762)
+..++.+.. +.-....+++|+||.+.- |+..-+.+-++|.+. + ..+|+.++.
T Consensus 74 ~~~~i~~~~-----~~~~~f~~~~DvVi~a~D--------------n~~aR~~ln~~c~~~-~-iplI~~g~~ 125 (234)
T cd01484 74 YQNKVGPEQ-----DFNDTFFEQFHIIVNALD--------------NIIARRYVNGMLIFL-I-VPLIESGTE 125 (234)
T ss_pred EeccCChhh-----hchHHHHhCCCEEEECCC--------------CHHHHHHHHHHHHHc-C-CCEEEEccc
Confidence 777775422 012356788999997742 223334566777775 3 467777665
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.79 E-value=8.9 Score=40.37 Aligned_cols=126 Identities=15% Similarity=0.175 Sum_probs=68.6
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHh-c---ChhHHHHHhhhhcccccCCe
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIF-Q---SPLYEALKKEQSESAIFEKV 131 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll-~---~~~f~~l~~~~~~~~~~~kV 131 (762)
+-++..+|.|.| -|.+|++.+|.|.|+ |+ ++.+++-..-..+...|.-..+ . .+--+.+++.. ....+.+
T Consensus 26 ekl~~~~V~VvG-iGGVGSw~veALaRs--Gig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri--~~InP~c 100 (263)
T COG1179 26 EKLKQAHVCVVG-IGGVGSWAVEALARS--GIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERI--KQINPEC 100 (263)
T ss_pred HHHhhCcEEEEe-cCchhHHHHHHHHHc--CCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHH--HhhCCCc
Confidence 345678899999 577999999999999 77 7777665432222222221111 0 00001111111 1112233
Q ss_pred EEEEeecCCCCCCCCHHHHHhhcC-CccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccC
Q psy7542 132 IPINGDVAVPDLGISAEDRQMLSE-TIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHP 210 (762)
Q Consensus 132 ~~V~GDl~~~~LGLs~~~l~~l~~-~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~ 210 (762)
++-..|. =++++.++.++. +.|.||.|-= |+..-..|+..|.+. ++ -.+||..+.+
T Consensus 101 ~V~~~~~-----f~t~en~~~~~~~~~DyvIDaiD--------------~v~~Kv~Li~~c~~~-ki---~vIss~Gag~ 157 (263)
T COG1179 101 EVTAIND-----FITEENLEDLLSKGFDYVIDAID--------------SVRAKVALIAYCRRN-KI---PVISSMGAGG 157 (263)
T ss_pred eEeehHh-----hhCHhHHHHHhcCCCCEEEEchh--------------hhHHHHHHHHHHHHc-CC---CEEeeccccC
Confidence 3322221 123445666655 5899997632 445556799999987 33 3566665444
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.77 E-value=1.4 Score=48.31 Aligned_cols=37 Identities=30% Similarity=0.448 Sum_probs=29.3
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPK 97 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~ 97 (762)
+++|.|.||||-+|+.+++.|-++.+.+ .+.++...+
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~r 38 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASAR 38 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEeccc
Confidence 3679999999999999999999975677 455555443
|
|
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=86.76 E-value=1.2 Score=47.89 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=31.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
..+.+|+|+||+|.+|..+++.+... +.+|+++.|..
T Consensus 161 ~~~~~vlI~ga~g~vG~~~~~~a~~~--g~~v~~~~~~~ 197 (332)
T cd08259 161 KKGDTVLVTGAGGGVGIHAIQLAKAL--GARVIAVTRSP 197 (332)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEeCCH
Confidence 45789999999999999999998877 77888888753
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >KOG1178|consensus | Back alignment and domain information |
|---|
Probab=86.37 E-value=0.27 Score=61.18 Aligned_cols=133 Identities=23% Similarity=0.327 Sum_probs=101.1
Q ss_pred EEEECCCChhHHHHHHHHHHcCC---CcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 64 IFITGASGFVGKVLLEKILRTCE---NVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 64 VLVTGATGFLG~~LvekLL~~gp---~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+++||.+|++|+...+.+...+. .+.+.++.|..+..+...|.+.... .+.... +...-++..+.+++..
T Consensus 721 ~~~~~~~~~l~~~~l~~~~~~~~~~~~i~~~~~~~a~~e~a~~~~~~~~i~--~~~~~~-----e~~~i~~~~~~~~~~~ 793 (1032)
T KOG1178|consen 721 VFLTGYTGYLGRRKLSNLVKLSNFFYIILVFALVRASSEEASGGRLQDAIQ--IYGVLN-----EELLINIIVHLIDLSK 793 (1032)
T ss_pred eeeeeccceehhhhhhhhhhhhhhhheeeeEEEeccCCchhhccchhchhh--hhhhcc-----ccccceeeeehhhhhh
Confidence 89999999999999998887743 2278888888776655555544322 222211 3345678888999999
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
..+|+...-+..+.+.++.++|+++.++...+.......|+.+|.+.+..+...+ +.+..+|+
T Consensus 794 ~~~~~~~~l~~~l~~~~~~~i~~~~~~~~v~~~t~~~~~~~~~~~~~~~l~~~l~--~~~~~~s~ 856 (1032)
T KOG1178|consen 794 SLFGLEDTLWNKLQEPVSIVIHNGALVHEVLRYTELRYPNVIGTITVLPLYSFLK--KKPKDISL 856 (1032)
T ss_pred hhhcccchhhhccccCcceecccccceeeechhhccCCceeeeeeeeeeeecccc--ccceeEEe
Confidence 9999999999999999999999999998888887888889999999998887653 33444443
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=86.25 E-value=11 Score=41.02 Aligned_cols=110 Identities=16% Similarity=0.150 Sum_probs=67.7
Q ss_pred EEEECCCChhHHHHHHHHHHcCCCc--EEEEEeCCCCCcchH-HHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 64 IFITGASGFVGKVLLEKILRTCENV--KIYILLRPKKNKNSR-ERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 64 VLVTGATGFLG~~LvekLL~~gp~v--~V~~LvR~~~~~~~~-eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
|.|.|+ |.+|..++..|+.. ++ ++.++++......+. ..|.+.. .. .....+..++
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~--~~~~el~l~D~~~~~~~g~~~DL~~~~--------------~~-~~~~~i~~~~--- 59 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAK--GLASELVLVDVNEEKAKGDALDLSHAS--------------AF-LATGTIVRGG--- 59 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhc--CCCCEEEEEeCCccHHHHHHHhHHHhc--------------cc-cCCCeEEECC---
Confidence 457785 88999999988887 54 788888854321111 1111110 11 1222222211
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEe
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVS 204 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vS 204 (762)
+++ .++++|+||-+|+...- .++-.+....|+.-.+.+.+..++. ..+.++.+=
T Consensus 60 --------~~~-~l~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~-~p~~~viv~ 114 (300)
T cd00300 60 --------DYA-DAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKY-GPDAIILVV 114 (300)
T ss_pred --------CHH-HhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEc
Confidence 223 45899999999997543 3455577888999999999988876 344444433
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >KOG1496|consensus | Back alignment and domain information |
|---|
Probab=86.17 E-value=11 Score=39.55 Aligned_cols=175 Identities=17% Similarity=0.135 Sum_probs=88.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHc---CCCc--EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 62 KNIFITGASGFVGKVLLEKILRT---CENV--KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~---gp~v--~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
-+|+||||+|.||-+|+-.+.+- |++- ...+|.-+.. ....+-..--+++..|-.++. .
T Consensus 5 irVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~-~~~LegV~mELqD~a~PlL~~---------------V 68 (332)
T KOG1496|consen 5 IRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPM-MSVLEGVKMELQDCALPLLKG---------------V 68 (332)
T ss_pred eEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchH-HHHHHHHHHHHHhhhhhHHHh---------------h
Confidence 47999999999999999988764 2333 2233333221 111121111112222222111 1
Q ss_pred ecCCCCCCCCHHHHHhhcCCccEEEEcccccCcc-ccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEEEeCCcccCCCc
Q psy7542 137 DVAVPDLGISAEDRQMLSETIHIVYHIAATVRFD-DYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVYVSTAYCHPKEK 213 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~-~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~vSSay~~~~~~ 213 (762)
+.+. +-...++++|+.|-..|..+-. ..-++.+..||.-.+.--.+..+. +++|.+|.---+-.++ -
T Consensus 69 vatt--------d~~~afkdv~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNa--l 138 (332)
T KOG1496|consen 69 VATT--------DEVEAFKDVDVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNA--L 138 (332)
T ss_pred hccc--------ChhhhhccCcEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccch--h
Confidence 1111 3456678999999888876543 233567777876443322222221 4566554322221111 0
Q ss_pred ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCC
Q psy7542 214 VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWK 290 (762)
Q Consensus 214 ~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~ 290 (762)
...+..+ .=|++ |.-+.|..--.+.+.+.+.+ |.|+.-+.--+|.|...
T Consensus 139 i~~k~Ap---sIP~k-------------------------Nfs~lTRLDhNRA~~QlA~klgv~~~~VkNviIWGNHS 188 (332)
T KOG1496|consen 139 ILKKFAP---SIPEK-------------------------NFSALTRLDHNRALAQLALKLGVPVSDVKNVIIWGNHS 188 (332)
T ss_pred HHhhhCC---CCchh-------------------------cchhhhhhchhhHHHHHHHhhCCchhhcceeEEecccc
Confidence 1111111 11111 44455555555555555555 88988888888888654
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=86.15 E-value=9.4 Score=41.70 Aligned_cols=106 Identities=16% Similarity=0.132 Sum_probs=64.2
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++|-|.|+ |.+|..++..|+..+.. .|+++++...- ...+..++..... . .....++. ..+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l--~~g~a~d~~~~~~-----~----~~~~~~i~-~t~----- 62 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGI--PQGKALDMYEASP-----V----GGFDTKVT-GTN----- 62 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCCh--hHHHHHhhhhhhh-----c----cCCCcEEE-ecC-----
Confidence 57999996 99999999999987332 78888874331 1111111111000 0 00001111 012
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
+++. ++++|+||=+|+...- +++-.+.+..|+.-...+++...+.
T Consensus 63 -------d~~~-~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~ 108 (305)
T TIGR01763 63 -------NYAD-TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEH 108 (305)
T ss_pred -------CHHH-hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 5789999999997653 3344467888999888888877665
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=86.13 E-value=8.4 Score=35.02 Aligned_cols=69 Identities=26% Similarity=0.374 Sum_probs=46.6
Q ss_pred EEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCCC
Q psy7542 64 IFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDL 143 (762)
Q Consensus 64 VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~L 143 (762)
|+|.|. |-+|..+++.|.+. +.+|.++.+.+ ++.+++. ...+.++.||.++++
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~--~~~vvvid~d~------~~~~~~~-----------------~~~~~~i~gd~~~~~- 53 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEG--GIDVVVIDRDP------ERVEELR-----------------EEGVEVIYGDATDPE- 53 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHT--TSEEEEEESSH------HHHHHHH-----------------HTTSEEEES-TTSHH-
T ss_pred eEEEcC-CHHHHHHHHHHHhC--CCEEEEEECCc------HHHHHHH-----------------hcccccccccchhhh-
Confidence 578885 78999999999996 56788888753 2232221 134789999999876
Q ss_pred CCCHHHHHhh-cCCccEEEEcc
Q psy7542 144 GISAEDRQML-SETIHIVYHIA 164 (762)
Q Consensus 144 GLs~~~l~~l-~~~vDiViH~A 164 (762)
.++++ +++++.|+=+.
T Consensus 54 -----~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 54 -----VLERAGIEKADAVVILT 70 (116)
T ss_dssp -----HHHHTTGGCESEEEEES
T ss_pred -----HHhhcCccccCEEEEcc
Confidence 45543 45788777443
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=85.54 E-value=6.8 Score=44.71 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=51.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
..++|+|.|+ |.+|..+++.|.+. +..|+++.+.. ++++++. . ....+.++.||.+
T Consensus 230 ~~~~iiIiG~-G~~g~~l~~~L~~~--~~~v~vid~~~------~~~~~~~---------~------~~~~~~~i~gd~~ 285 (453)
T PRK09496 230 PVKRVMIVGG-GNIGYYLAKLLEKE--GYSVKLIERDP------ERAEELA---------E------ELPNTLVLHGDGT 285 (453)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhC--CCeEEEEECCH------HHHHHHH---------H------HCCCCeEEECCCC
Confidence 4688999997 99999999999887 66777777653 2222221 0 1135778999998
Q ss_pred CCCCCCCHHHHH-hhcCCccEEEEc
Q psy7542 140 VPDLGISAEDRQ-MLSETIHIVYHI 163 (762)
Q Consensus 140 ~~~LGLs~~~l~-~l~~~vDiViH~ 163 (762)
+++ .+. .-+++++.|+-+
T Consensus 286 ~~~------~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 286 DQE------LLEEEGIDEADAFIAL 304 (453)
T ss_pred CHH------HHHhcCCccCCEEEEC
Confidence 765 453 345678988843
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=85.52 E-value=3.2 Score=44.96 Aligned_cols=36 Identities=14% Similarity=0.356 Sum_probs=31.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
..|++|+|.|+ |-+|+.+++.|... +.+|++..|..
T Consensus 149 l~gk~v~IiG~-G~iG~avA~~L~~~--G~~V~v~~R~~ 184 (287)
T TIGR02853 149 IHGSNVMVLGF-GRTGMTIARTFSAL--GARVFVGARSS 184 (287)
T ss_pred CCCCEEEEEcC-hHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 46899999996 88999999999887 66888888864
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=85.48 E-value=1.1 Score=49.64 Aligned_cols=34 Identities=15% Similarity=0.380 Sum_probs=27.6
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
++|.|+||||++|++|++.|.++ ++++|..+.++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~-~~~~l~~v~~~ 34 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH-PYFELAKVVAS 34 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCceEEEEEEC
Confidence 47999999999999999988776 66777777543
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=85.41 E-value=4.1 Score=40.68 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=32.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKK 98 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~ 98 (762)
..|++|.|.| .|-||+.+++.|..- +.+|+...|..+
T Consensus 34 l~g~tvgIiG-~G~IG~~vA~~l~~f--G~~V~~~d~~~~ 70 (178)
T PF02826_consen 34 LRGKTVGIIG-YGRIGRAVARRLKAF--GMRVIGYDRSPK 70 (178)
T ss_dssp STTSEEEEES-TSHHHHHHHHHHHHT--T-EEEEEESSCH
T ss_pred cCCCEEEEEE-EcCCcCeEeeeeecC--CceeEEecccCC
Confidence 4799999999 799999999999866 889999999765
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=85.26 E-value=5.5 Score=47.56 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=32.3
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCC
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPK 97 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~ 97 (762)
+-+++.+|||.| .|.||+.+++.|++. || +|.+++...
T Consensus 334 ekL~~~kVLIvG-aGGLGs~VA~~La~~--GVg~ItlVD~D~ 372 (664)
T TIGR01381 334 ERYSQLKVLLLG-AGTLGCNVARCLIGW--GVRHITFVDNGK 372 (664)
T ss_pred HHHhcCeEEEEC-CcHHHHHHHHHHHHc--CCCeEEEEcCCE
Confidence 456789999999 578999999999998 88 888887654
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=85.14 E-value=15 Score=39.77 Aligned_cols=103 Identities=17% Similarity=0.077 Sum_probs=60.8
Q ss_pred EEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE-eecCCCC
Q psy7542 64 IFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN-GDVAVPD 142 (762)
Q Consensus 64 VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~-GDl~~~~ 142 (762)
|.|.|| |.+|..++..|...+.. +|+++++......+. ..++.. .. ........+.. +
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~--~~dl~~-----~~------~~~~~~~~I~~t~------ 59 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGK--ALDISQ-----AA------PILGSDTKVTGTN------ 59 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHH--HHHHHH-----hh------hhcCCCeEEEEcC------
Confidence 468897 99999999988877323 899998874321111 111110 00 00011112111 1
Q ss_pred CCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 143 LGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 143 LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
+++. ++++|+||-+|+...- .....+.+..|+.-.+.+++...+.
T Consensus 60 ------d~~~-l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~ 105 (300)
T cd01339 60 ------DYED-IAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKY 105 (300)
T ss_pred ------CHHH-hCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333 5899999999987543 3344456777888888888777765
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.07 E-value=3.4 Score=45.79 Aligned_cols=37 Identities=35% Similarity=0.446 Sum_probs=30.0
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHc-CCCcEEEEEeCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRT-CENVKIYILLRP 96 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~-gp~v~V~~LvR~ 96 (762)
++.+|.|.||||++|..|++-|.++ .|..++..+...
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~ 40 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE 40 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc
Confidence 5678999999999999999988875 355587777554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 762 | ||||
| 4dqv_A | 478 | Crystal Structure Of Reductase (R) Domain Of Non-Ri | 1e-11 |
| >pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal Peptide Synthetase From Mycobacterium Tuberculosis Length = 478 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 762 | |||
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 2e-61 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-22 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 1e-17 | |
| 2ett_A | 128 | Sorting nexin-22; PX domain, BC019655, SNX22_human | 1e-09 | |
| 2ett_A | 128 | Sorting nexin-22; PX domain, BC019655, SNX22_human | 1e-04 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 6e-09 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 8e-08 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 3e-07 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 4e-07 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 2e-06 | |
| 1h6h_A | 143 | Neutrophil cytosol factor 4; PX domain; HET: PIB; | 8e-06 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 1e-05 | |
| 3p0c_A | 130 | Nischarin; structural genomics, structural genomic | 1e-05 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 1e-05 | |
| 2iwl_X | 140 | Phosphatidylinositol-4-phosphate 3-kinase C2 domai | 4e-05 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 5e-05 | |
| 2v14_A | 134 | Kinesin-like motor protein C20ORF23; plus-END kine | 5e-05 | |
| 2v14_A | 134 | Kinesin-like motor protein C20ORF23; plus-END kine | 1e-04 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 9e-05 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 1e-04 | |
| 3lui_A | 115 | Sorting nexin-17, SNX17; PX domain, endosome, phos | 1e-04 | |
| 1xte_A | 154 | Serine/threonine-protein kinase SGK3; CISK, PX dom | 2e-04 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 3e-04 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 4e-04 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 8e-04 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 8e-04 |
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 2e-61
Identities = 68/364 (18%), Positives = 143/364 (39%), Gaps = 38/364 (10%)
Query: 39 FIVKAIPKKFKHLPDRISATLEHKNIFITGASGFVGKVLLEKILRTCE-NVKIYILLRPK 97
FI +LP E + + +TGA+GF+G+ L+ ++LR + + ++ L+R +
Sbjct: 54 FIDADTLATAVNLPGPSP---ELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAE 110
Query: 98 KNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETI 157
++++R RLE+ F S E L+ + +A +++ + GD + PDLG+ + L+ET+
Sbjct: 111 SDEDARRRLEKTFDSGDPELLRHFKELAA--DRLEVVAGDKSEPDLGLDQPMWRRLAETV 168
Query: 158 HIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEE 217
++ AA V Y + + N GT +++ ++ L+ F YVSTA
Sbjct: 169 DLIVDSAAMVNAFPYHELFG-PNVAGTAELIRIALTT-KLKPFTYVSTADVG-------- 218
Query: 218 KTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME-AGMP 276
+ P E A++ + + GY +K E ++ E + +P
Sbjct: 219 ----AAIEPSAFTEDADIRVISPTRTVDGGW----AGGYGTSKWAGEVLLREANDLCALP 270
Query: 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGA--------GKGIIRTMYCDYSTCADF 328
+ R +I + G + + T +++ + D
Sbjct: 271 VAVFRCGMI--LADTSYAGQLNMSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDG 328
Query: 329 LPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIARNKVPLNNV 388
LPV + + + + ++ D I + ++ + P+ +
Sbjct: 329 LPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDGIGLDEYVD---WLIEAGYPIRRI 385
Query: 389 LWYP 392
+
Sbjct: 386 DDFA 389
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 6e-22
Identities = 99/686 (14%), Positives = 197/686 (28%), Gaps = 234/686 (34%)
Query: 128 FEKVIPINGDVAVPDLGIS-AED--RQMLS--ETIHIVYHIAATVRFDDYMQTYVFLNTR 182
++ ++ + D V + +D + +LS E HI+ + D T
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII------MSKDAVSGTLRLF--- 68
Query: 183 GTRDMLNLSKQMIHLQLFV-------Y---VSTAYCHPKEKVLEEKTY----------PP 222
L LSKQ +Q FV Y +S ++ + + Y
Sbjct: 69 ---WTL-LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 223 PVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRP 282
+ +NV + + K L+Q LL+ P V+ + G+
Sbjct: 125 VFAKYNV-SRLQPYLK-----LRQALLELRPAKN---------VLID----GVL------ 159
Query: 283 SIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLST 342
G+GK + C + + +
Sbjct: 160 --------------------------GSGKTWVAL-----DVCLSYKVQCKMDFKIF--- 185
Query: 343 WNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMTNRGYE 402
W L N + V+ + +QI + + K+ ++++ + ++ YE
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 403 P---VLKRVHN-RIKKGFDI------------------FEYYT-----KNSWSF-KNENL 434
VL V N + F++ T +S + +E
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 435 HALRNMMNEK-EAIRYEI------------AMFRD------------LDEAKAYFEMCIH 469
L ++ + + + E+ RD D+ E +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL- 363
Query: 470 GARQYLLGEPPETLPGAKRHVRIMYY--------VHVITQVLLLGFFLWVLRHPGPKENC 521
L EP E R M+ H+ T +L L +W K +
Sbjct: 364 ---NVL--EPAE--------YRKMFDRLSVFPPSAHIPTILLSL---IW---FDVIKSDV 404
Query: 522 ISV----SGYRLIECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGK 577
+ V Y L+E + I + ++ + + H I+D
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIP----SIYLELKVKLENEYALHRS-----IVD---- 451
Query: 578 YAYAPPYSRTLKQNRRQKKRNCKYFIYQWLG--LNNVLWYPGGAMTNTVNLY--LYLDFG 633
Y P +T + +YF Y +G L N+ + L+ ++LDF
Sbjct: 452 -HYNIP--KTFDSDDLIPPYLDQYF-YSHIGHHLKNI------EHPERMTLFRMVFLDFR 501
Query: 634 FFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGPSRNQVLAFLGVNSKN 693
F + K + + ++ S + L+ Y + P +++ +
Sbjct: 502 FLEQKIRHDSTAWNASG--SILNTLQQ-----LKFYKPYICDNDPKYERLVNAIL----- 549
Query: 694 SQPQPSISLHHYHFVFRTKTNDYRTP 719
F+ + + N +
Sbjct: 550 ------------DFLPKIEENLICSK 563
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 1e-17
Identities = 38/286 (13%), Positives = 71/286 (24%), Gaps = 76/286 (26%)
Query: 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKK 120
H + GA+G +G I + ++ RP +RL +
Sbjct: 13 HVKYAVLGATGLLGHHAARAIRA--AGHDLVLIHRPSSQ---IQRLAYL----------- 56
Query: 121 EQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFD-DYMQTYVFL 179
+ ++ +R + + V A Q V
Sbjct: 57 ---------EPECRVAEMLDHA----GLERAL--RGLDGVIFSAGYYPSRPRRWQEEVAS 101
Query: 180 NTRGTRDMLNLSKQMIHLQLFVYVSTA---YCHPKEKVLEEKTYPPPVSPHNVIEKAELL 236
T Q + +YV +A HP+ E + +
Sbjct: 102 ALGQTNPFYAACLQA-RVPRILYVGSAYAMPRHPQGLPGHEGLFYDSLP----------- 149
Query: 237 SKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGW 296
+ Y K + E G+P +I P +++ G
Sbjct: 150 --------------SGKSSYVLCKWALDEQAREQARNGLPVVIGIPGMVL--------GE 187
Query: 297 TDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDV--LVNGVLL 340
D ++ G G + Y +D G+L+
Sbjct: 188 LDIGPTTGRVITAIGNGEMT-HYVAGQRNV----IDAAEAGRGLLM 228
|
| >2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens} Length = 128 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 1e-09
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 629 YLDFGFFQN--KTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGPSRN-QVLA 685
Y +F K + P FP K++ + + + L++RR LE Y++ + ++L
Sbjct: 52 YSEFHALHKRIKKLYKVPDFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQEVPKELLE 111
Query: 686 FLGVNSKNSQP 696
FL + + P
Sbjct: 112 FLRLRHFPTDP 122
|
| >2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens} Length = 128 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 533 EKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSE 565
EK + V+ + V + + V +RYSE + H
Sbjct: 29 EKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKR 61
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 6e-09
Identities = 32/243 (13%), Positives = 68/243 (27%), Gaps = 71/243 (29%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
K + +TGA+G +G+V+ E++ E +++ L P E
Sbjct: 4 KRLLVTGAAGQLGRVMRERLAPMAEILRL-ADLSPLDPAGPNEEC--------------- 47
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNT 181
+ D+A + + + H+ + + + + N
Sbjct: 48 ------------VQCDLADANAVNAM------VAGCDGIVHLGG-ISVEKPFEQILQGNI 88
Query: 182 RGTRDMLNLSKQMIHLQLFVYVST--AY-CHPKEKVLEEKTYPPPVSPHNVIEKAELLSK 238
G ++ ++ V+ S+ +P+ + L P
Sbjct: 89 IGLYNLYEAARAH-GQPRIVFASSNHTIGYYPQTERLGPDVPARPDGL------------ 135
Query: 239 NELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDP--LPG 295
Y +KC E + Y + G ++R P + L
Sbjct: 136 -----------------YGVSKCFGENLARMYFDKFGQETALVRIGSCTPEPNNYRMLST 178
Query: 296 WTD 298
W
Sbjct: 179 WFS 181
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 8e-08
Identities = 33/244 (13%), Positives = 69/244 (28%), Gaps = 77/244 (31%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
+ +TGA+G VG + + V++ ++ E EEI
Sbjct: 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGA----AEAHEEI------------ 46
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVR---FDDYMQTYVF 178
+ D+A + + H+ ++D +Q
Sbjct: 47 ------------VACDLADAQAVHDL------VKDCDGIIHLGGVSVERPWNDILQA--- 85
Query: 179 LNTRGTRDMLNLSKQMIHLQLFVYVSTA---YCHPKEKVLEEKTYPPPVSPHNVIEKAEL 235
N G ++ ++ + V+ S+ +P+ ++ + P S
Sbjct: 86 -NIIGAYNLYEAARNL-GKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSL--------- 134
Query: 236 LSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDP-- 292
Y +KC E + + Y + + +R P KD
Sbjct: 135 --------------------YGLSKCFGEDLASLYYHKFDIETLNIRIGSCFPKPKDARM 174
Query: 293 LPGW 296
+ W
Sbjct: 175 MATW 178
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 47/310 (15%), Positives = 85/310 (27%), Gaps = 86/310 (27%)
Query: 64 IFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQS 123
I +TG+SG +G L+ + + I + +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNV-IASDIVQRDTGGIKF----------------- 43
Query: 124 ESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATV------RFDDYMQTYV 177
I DV+ D A + +I ++H+A + +
Sbjct: 44 ----------ITLDVSNRDEIDRA----VEKYSIDAIFHLAGILSAKGEKDPALAYKV-- 87
Query: 178 FLNTRGTRDMLNLSKQMIHLQLFVYVSTA---YCHPKEKVLEEKTYPPPVSPHNVIEKAE 234
N GT ++L +KQ ++ V ST + + T P +
Sbjct: 88 --NMNGTYNILEAAKQH-RVEKVVIPSTIGVFGPETPKNKVPSITITRPRTM-------- 136
Query: 235 LLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPL 293
+ TK E + Y E G+ LR II +P
Sbjct: 137 ---------------------FGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPT 175
Query: 294 PGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353
G TD + A K Y + + + + ++ + +
Sbjct: 176 AGTTDYA---VEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVD----LYEADRDKL 228
Query: 354 ---RVINLTA 360
N+TA
Sbjct: 229 VLRNGYNVTA 238
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 45/325 (13%), Positives = 100/325 (30%), Gaps = 75/325 (23%)
Query: 50 HLPDRISATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEI 109
H R + + +I I GA+G VG+ L ++++ K + +E+
Sbjct: 3 HSSGRENLYFQGMHIAIIGAAGMVGRKLTQRLV--------------KDGSLGGKPVEKF 48
Query: 110 FQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATV-- 167
+++ V D++ P +++ +++H+AA V
Sbjct: 49 TLIDVFQPEAPA----GFSGAVDARAADLSAPGE-----AEKLVEARPDVIFHLAAIVSG 99
Query: 168 ----RFDDYMQTYVFLNTRGTRDMLNLSKQ----MIHLQLFVYVSTA--YCHPKEKVLEE 217
FD + +N GTR + + + + V+ S+ + P + +
Sbjct: 100 EAELDFDKGYR----INLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPD 155
Query: 218 KTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMP 276
+ + P++ Y K +CE ++++Y
Sbjct: 156 EFHTTPLTS-----------------------------YGTQKAICELLLSDYSRRGFFD 186
Query: 277 CMILR-PSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLV 335
+ +R P+I I P + + +L G + S V
Sbjct: 187 GIGIRLPTICIRP-GKPNAAASGFFS---NILREPLVGQEAVLPVPESIRHWHASPRSAV 242
Query: 336 NGVLLSTWNFLSNPGNTMRVINLTA 360
L+ R +++
Sbjct: 243 GF-LIHGAMIDVEKVGPRRNLSMPG 266
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 39/238 (16%), Positives = 71/238 (29%), Gaps = 67/238 (28%)
Query: 55 ISATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYI---LLRPKKNKNSRERLEEIFQ 111
I LE++ I ITG +GFVG L K+ + N+R
Sbjct: 4 IDDELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPS------ 57
Query: 112 SPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAA--TVRF 169
F+ +I G+V D+ + R++ ++H AA
Sbjct: 58 ------------SLGHFKNLIGFKGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTM 105
Query: 170 DD---YMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYVSTA--YCHPKEKVLEEKTYPPP 223
+ M+T N + ++L +++ +Y S+A Y + K P
Sbjct: 106 LNQELVMKT----NYQAFLNLLEIARSKKAK---VIYASSAGVYGNTKAPN-VVGKNESP 157
Query: 224 VSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILR 281
+ Y ++K + V + + LR
Sbjct: 158 ENV-----------------------------YGFSKLCMDEFVLSHS-NDNVQVGLR 185
|
| >1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1 Length = 143 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 8e-06
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 644 PSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGP--SRNQ-VLAFLGVNSKNSQPQP 698
P+ P K + ++ + R L Y+K + ++ V F + +S+ P
Sbjct: 86 PTLPAKVYVGVKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYDSEQVP 143
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 41/228 (17%), Positives = 61/228 (26%), Gaps = 75/228 (32%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
I +TG +GF+G+ ++E I I K N YE
Sbjct: 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAIN------------DYEY---- 46
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFD---DYMQTYVF 178
D + DL D + V H+AAT
Sbjct: 47 ------------RVSDYTLEDLINQLND-------VDAVVHLAATRGSQGKISEFHD--- 84
Query: 179 LNTRGTRDMLNLSKQMIHLQLFVYVSTA--YCHPKEKVLEEKTYPPPVSPHNVIEKAELL 236
N T+++ + + ++ VY ST Y EK P P
Sbjct: 85 -NEILTQNLYDACYEN-NISNIVYASTISAYSDETSLPWNEKELPLPDLM---------- 132
Query: 237 SKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPS 283
Y +K CE + Y G+ LR +
Sbjct: 133 -------------------YGVSKLACEHIGNIYSRKKGLCIKNLRFA 161
|
| >3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens} Length = 130 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-05
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 629 YLDFGFFQNK----TKFSTPSFPPKKIRSN-QPKVLDERRHLLEIYLKEMFKFGPSRN-- 681
Y DF K K PPKKI ++++R LE+YL+++ P
Sbjct: 56 YSDFHDLHEKLVAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPR 115
Query: 682 QVLAFLGVNS 691
+ FL +
Sbjct: 116 VLAHFLHFHF 125
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 37/246 (15%), Positives = 72/246 (29%), Gaps = 66/246 (26%)
Query: 49 KHLPDRISAT-LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLE 107
H+P ++A+ L + N+ + G +GFVG L++++L N +++++ +
Sbjct: 19 SHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVN-QVHVV-----DNLLSAEKI 72
Query: 108 EIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIH---IVYHIA 164
+ P F + D +L+ V+H+A
Sbjct: 73 NVPDHPAVR-----------F-----SETSIT---------DDALLASLQDEYDYVFHLA 107
Query: 165 ATVRFDDYMQ---TYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA--YCHPKEKVLEEKT 219
+ NT T + K L+ VY + +
Sbjct: 108 TYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATE 167
Query: 220 YPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNG-YAYTKCLCEGVVTEYMEA-GMPC 277
VS HN + Y+ +K E Y + +P
Sbjct: 168 ETDIVSLHN------------------------NDSPYSMSKIFGEFYSVYYHKQHQLPT 203
Query: 278 MILRPS 283
+ R
Sbjct: 204 VRARFQ 209
|
| >2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 4e-05
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 629 YLDFGFFQNKTK-----FSTPSFPPKKI--RSNQPKVLDERRHLLEIYLKEMFKFGP--S 679
+ +F NK + P FP + + R++ V +R+ L YL+ + +
Sbjct: 59 FDEFQELHNKLSIIFPLWKLPGFPNRMVLGRTHIKDVAAKRKIELNSYLQSLMNASTDVA 118
Query: 680 RNQ-VLAFLGVNSKNSQPQ 697
V F ++ + +
Sbjct: 119 ECDLVCTFFHPLLRDEKAE 137
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 35/236 (14%), Positives = 72/236 (30%), Gaps = 73/236 (30%)
Query: 56 SATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYI---LLRPKKNKNSRERLEEIFQS 112
+ +E + I +TG +GF+G +++ + I + L K N + +
Sbjct: 41 GSGIEGRMIIVTGGAGFIGSNIVKALNDKGIT-DILVVDNLKDGTKFVNLVDLNIADY-- 97
Query: 113 PLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAA----TVR 168
+ KE I + + ++H A T
Sbjct: 98 -----MDKEDFLIQIMAGEEFGDVEA---------------------IFHEGACSSTTEW 131
Query: 169 FDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA--YCHPKEKVLEEKTYPPPVSP 226
YM N + ++++L+ + F+Y S+A Y +E + Y P++
Sbjct: 132 DGKYMMDN---NYQYSKELLHYCLE--REIPFLYASSAATYGGRTSDFIESREYEKPLNV 186
Query: 227 HNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME-AGMPCMILR 281
+ Y+K L + V + + A + R
Sbjct: 187 -----------------------------FGYSKFLFDEYVRQILPEANSQIVGFR 213
|
| >2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 5e-05
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 629 YLDFGFFQNKTK-----FSTPSFPPKK-IRSNQPKVLDERRHLLEIYLKEMF 674
Y F K + FPPKK + +V+ ERR LE YL++ F
Sbjct: 43 YSRFREMHKTLKLKYAELAALEFPPKKLFGNKDERVIAERRSHLEKYLRDFF 94
|
| >2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 522 ISVSGYRLI-ECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHS 564
IS+ Y L + + ++ + + + + + + V +RYS H
Sbjct: 8 ISIPRYVLCGQGKDAHFEFEVKITVLDETWTVFRRYSRFREMHK 51
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 9e-05
Identities = 34/190 (17%), Positives = 60/190 (31%), Gaps = 46/190 (24%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLR-PKKNKNSRERLEEIFQSPLYEALKK 120
K I + GASGFVG LL + L V ++R P+K K E L+
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVT--AVVRHPEKIKIENEHLK------------- 49
Query: 121 EQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLN 180
DV+ D + V + +
Sbjct: 50 ------------VKKADVSSLDEVCEV------CKGADAVISAFNPGWNNPDIYD---ET 88
Query: 181 TRGTRDMLNLSKQMIHLQLFVYVSTA---YCHPKEKVLEEKTYPPPVSPHNVIEKAELLS 237
+ +++ K+ + F+ V A + P ++++ P + P + L
Sbjct: 89 IKVYLTIIDGVKKA-GVNRFLMVGGAGSLFIAPGLRLMDSGEVPENILPG-----VKALG 142
Query: 238 KNELELLKQE 247
+ L L +E
Sbjct: 143 EFYLNFLMKE 152
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 60/319 (18%), Positives = 101/319 (31%), Gaps = 86/319 (26%)
Query: 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNS--RERLEEIFQSPLY 115
+ K ITG +GF+G LLE +L+ + K+ L N + + L+E+
Sbjct: 24 PAQPKVWLITGVAGFIGSNLLETLLK--LDQKVVGL----DNFATGHQRNLDEV------ 71
Query: 116 EALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIH---IVYHIAATVRFDDY 172
+ + I GD+ + + V H AA
Sbjct: 72 ----RSLVSEKQWSNFKFIQGDIR---------NLDDCNNACAGVDYVLHQAALGSVPRS 118
Query: 173 MQ---TYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA--YCHPKEKVLEEKTYPPPVSPH 227
+ T N G +ML ++ +Q F Y +++ Y E T P+SP
Sbjct: 119 INDPITSNATNIDGFLNMLIAARDA-KVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSP- 176
Query: 228 NVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIII 286
YA TK + E + G + LR +
Sbjct: 177 ----------------------------YAVTKYVNELYADVFSRCYGFSTIGLRYFNVF 208
Query: 287 PIWKDP-------LPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVL 339
+DP +P WT ++ G + + D T DF ++ V L
Sbjct: 209 GRRQDPNGAYAAVIPKWTSSMI--------QGDDV--YINGDGETSRDFCYIENTVQANL 258
Query: 340 LSTWNFLSNPGNTMRVINL 358
L+ + +V N+
Sbjct: 259 LAA---TAGLDARNQVYNI 274
|
| >3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A Length = 115 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 629 YLDFGFFQN--KTKFST---PSFPPKKIRSNQPKVLDERRHLLEIYLKEMFK 675
Y + ++ P+FPPKK+ S P +++RR LE Y++ + +
Sbjct: 40 YSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQ 91
|
| >1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A Length = 154 | Back alignment and structure |
|---|
Score = 41.5 bits (97), Expect = 2e-04
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 629 YLDFGFFQN--KTKFS--TPSFPPKKIRSN--QPKVLDERRHLLEIYLKEMFKFGPSRN- 681
Y +F N K +F P K+I + P + +RR L +++ + ++ N
Sbjct: 45 YAEFDKLYNSLKKQFPAMALKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPELYNH 104
Query: 682 -QVLAFLGVNSKNSQPQPS 699
V AFL ++S Q PS
Sbjct: 105 PDVRAFLQMDSPRHQSDPS 123
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 39/213 (18%), Positives = 73/213 (34%), Gaps = 53/213 (24%)
Query: 62 KNIFITGASGFVG----KVLLEKILRTCENVKIY-ILLRPKKNKNSRERLEEIFQSPLYE 116
K +F+TG +GF G L + L + L+E
Sbjct: 10 KRVFVTGHTGFKGGWLSLWLQTM------GATVKGYSLTAPTVPS------------LFE 51
Query: 117 ALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIH-----IVYHIAA--TVR- 168
+ + GD+ D+ L E+I IV+H+AA VR
Sbjct: 52 TARVAD-------GMQSEIGDI---------RDQNKLLESIREFQPEIVFHMAAQPLVRL 95
Query: 169 -FDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPH 227
+ + ++TY N GT +L + + ++ V +++ C+ ++ + + +
Sbjct: 96 SYSEPVETYST-NVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGY 154
Query: 228 NVIEKAELLSKNELELLKQELLQDFPNGYAYTK 260
+ SK EL+ F N Y +
Sbjct: 155 DPYS----NSKGCAELVTSSYRNSFFNPANYGQ 183
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 18/146 (12%), Positives = 49/146 (33%), Gaps = 33/146 (22%)
Query: 52 PDRISATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQ 111
+ +++ K + I G +GF+G L ++IL T + ++ + +RL ++ +
Sbjct: 15 QTQGPGSMKAKKVLILGVNGFIGHHLSKRILETTDWE-VFGM------DMQTDRLGDLVK 67
Query: 112 SPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDD 171
GD+ + E + + ++ + A
Sbjct: 68 HERMHF----------------FEGDITINK-----EWVEYHVKKCDVILPLVAIATPAT 106
Query: 172 YM----QTYVFLNTRGTRDMLNLSKQ 193
Y+ + L+ ++ + +
Sbjct: 107 YVKQPLRV-FELDFEANLPIVRSAVK 131
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 8e-04
Identities = 35/257 (13%), Positives = 75/257 (29%), Gaps = 61/257 (23%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
+ +TGASG G+++ +K+ + L+R + K ++F + +
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIG---DITDAD 61
Query: 122 QSESAI--FEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFL 179
A + ++ + V G + D+
Sbjct: 62 SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQV----DW------- 110
Query: 180 NTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELL-SK 238
G ++ ++ +K ++ V V + P P N + +L K
Sbjct: 111 --IGQKNQIDAAKVA-GVKHIVVVGSMGGT------------NPDHPLNKLGNGNILVWK 155
Query: 239 NELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTD 298
+ E + L D +G P I+R ++ D G +
Sbjct: 156 RKAE----QYLAD---------------------SGTPYTIIRAGGLL----DKEGGVRE 186
Query: 299 NINGPTGLLIGAGKGII 315
+ G L+ +
Sbjct: 187 LLVGKDDELLQTDTKTV 203
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 8e-04
Identities = 63/325 (19%), Positives = 105/325 (32%), Gaps = 100/325 (30%)
Query: 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNS--RERLEEIFQSPLYE 116
K ITG +GF+G LLEK+L+ N + L N ++ + L+E+
Sbjct: 23 FSPKTWLITGVAGFIGSNLLEKLLK--LNQVVIGL----DNFSTGHQYNLDEV------- 69
Query: 117 ALKKEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAA--TVRF----- 169
K + + + I GD+ + + + + V H AA +V
Sbjct: 70 ---KTLVSTEQWSRFCFIEGDIR------DLTTCEQVMKGVDHVLHQAALGSVPRSIVDP 120
Query: 170 DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA--YCHPKEKVLEEKTYPPPVSPH 227
T N G ++L+ +K +Q F Y +++ Y E+ P+SP
Sbjct: 121 ITTNAT----NITGFLNILHAAKNA-QVQSFTYAASSSTYGDHPALPKVEENIGNPLSP- 174
Query: 228 NVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILR----- 281
YA TK + E Y G + LR
Sbjct: 175 ----------------------------YAVTKYVNEIYAQVYARTYGFKTIGLRYFNVF 206
Query: 282 -PSIIIPIWKDP-------LPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDV 333
+DP +P WT + G + + D T DF +D
Sbjct: 207 GR------RQDPNGAYAAVIPKWTAAML--------KGDDV--YINGDGETSRDFCYIDN 250
Query: 334 LVNGVLLSTWNFLSNPGNTMRVINL 358
++ +LS S + N+
Sbjct: 251 VIQMNILSALAKDSAKD---NIYNV 272
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 762 | |||
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.98 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.98 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.98 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.98 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.98 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.98 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.98 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.98 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.97 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.97 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.97 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.97 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.97 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.97 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.97 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.97 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.97 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.97 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.97 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.97 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.97 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.97 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.97 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 99.97 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.97 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.97 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.97 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.97 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.96 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.96 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.96 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.96 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.96 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.96 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.96 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.96 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.96 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.96 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.96 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.96 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 99.96 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.96 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.96 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.96 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.95 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.95 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.95 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.95 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 99.95 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 99.95 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 99.95 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.94 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.94 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.94 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.94 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.94 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.94 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.93 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.93 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.93 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.93 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.92 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.92 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.91 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.91 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.91 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.9 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.89 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.89 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.89 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.89 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.88 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.88 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.87 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.87 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.87 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.86 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.84 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.83 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.82 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.82 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.81 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.8 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.8 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.8 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.79 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.79 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.79 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.78 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.78 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.78 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.78 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.78 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.78 | |
| 4az9_A | 129 | Sorting nexin-24; protein transport; 1.75A {Homo s | 99.78 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.77 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.77 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.77 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.77 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.77 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.77 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.77 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.77 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.76 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.76 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.76 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.76 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.76 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.75 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.75 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.75 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.75 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.75 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.75 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.75 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.75 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.75 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.75 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.75 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.75 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.75 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.75 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.75 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.75 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.75 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.75 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.74 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.74 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.74 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.74 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.74 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.74 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.74 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.74 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.73 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.73 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.73 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.73 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.73 | |
| 2ett_A | 128 | Sorting nexin-22; PX domain, BC019655, SNX22_human | 99.73 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.73 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.73 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.73 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.73 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.73 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.73 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.73 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.73 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.73 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.73 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.72 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.72 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.72 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.72 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.72 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.72 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.72 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.72 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.72 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.72 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.72 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.72 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.72 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.72 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.72 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.72 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.71 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.71 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.71 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.71 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.71 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.71 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.71 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.71 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.71 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.71 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.71 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.71 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.71 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.71 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.71 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.71 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.71 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.71 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.7 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.7 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.7 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.7 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.7 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.7 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.7 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.7 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.7 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.7 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.7 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.7 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.7 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.7 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.7 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.7 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.7 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.7 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.7 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.7 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.69 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.69 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.69 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.69 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.69 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.69 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.69 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.69 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.69 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.69 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.69 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.69 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.69 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.68 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.68 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.68 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.68 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.68 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.68 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.68 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.68 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.68 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.68 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.68 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.68 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.68 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.68 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.68 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.68 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.68 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.67 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.67 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.67 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.67 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.67 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.67 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.67 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.67 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.66 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.66 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.66 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.65 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.65 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.65 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.65 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.65 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.65 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.64 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.64 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.64 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.64 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.63 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.63 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.63 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.63 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.63 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.63 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.62 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.62 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.62 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.62 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.62 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.6 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.6 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.59 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.58 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.58 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.56 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.55 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.55 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.55 | |
| 1kmd_A | 117 | VAM7P, vacuolar morphogenesis protein VAM7; PX dom | 99.55 | |
| 3p0c_A | 130 | Nischarin; structural genomics, structural genomic | 99.54 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.53 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.53 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.53 | |
| 1xte_A | 154 | Serine/threonine-protein kinase SGK3; CISK, PX dom | 99.52 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.52 | |
| 1h6h_A | 143 | Neutrophil cytosol factor 4; PX domain; HET: PIB; | 99.51 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.51 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.51 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.5 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.5 | |
| 3lui_A | 115 | Sorting nexin-17, SNX17; PX domain, endosome, phos | 99.5 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.49 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.47 | |
| 2v14_A | 134 | Kinesin-like motor protein C20ORF23; plus-END kine | 99.47 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.46 | |
| 3iq2_A | 138 | Sorting nexin-7; SNX7, PHOX, protein signalling, S | 99.46 | |
| 2csk_A | 146 | Sorting nexin 12; SNX12, PX domain, structural gen | 99.46 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.46 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.46 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.46 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.46 | |
| 2ar5_A | 121 | Phosphoinositide 3-kinase; PX domain, transferase; | 99.43 | |
| 1ocs_A | 162 | Sorting nexin GRD19; sorting protein, PX-domain, y | 99.4 | |
| 1kq6_A | 141 | NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha | 99.4 | |
| 2iwl_X | 140 | Phosphatidylinositol-4-phosphate 3-kinase C2 domai | 99.38 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.37 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.35 | |
| 2i4k_A | 128 | Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 al | 99.35 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.34 | |
| 2l73_A | 149 | NADPH oxidase organizer 1; cell membrane, PX domai | 99.29 | |
| 2v6v_A | 156 | BUD emergence protein 1; homotypic fusion, regulat | 99.27 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.17 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.16 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.15 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.14 | |
| 2wwe_A | 127 | Phosphoinositide-3-kinase, class 2, gamma polypept | 99.12 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.05 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.03 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.03 | |
| 3dyt_A | 366 | Sorting nexin-9; 3-helix bundle, BAR domain, PX do | 99.0 | |
| 4akv_A | 386 | Sorting nexin-33; transport protein, organelle bio | 98.99 | |
| 2dyb_A | 341 | Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid | 98.92 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 98.91 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 98.91 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 98.86 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 98.83 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 98.8 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.77 | |
| 3hpc_X | 161 | SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosph | 98.63 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.51 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 98.45 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.44 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.39 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 98.32 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.3 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.03 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.98 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 97.68 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 97.66 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.56 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 97.55 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.51 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.42 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.31 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.26 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 97.23 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.18 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.0 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 96.92 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 96.78 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 96.78 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 96.75 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 96.11 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 95.56 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 95.53 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 95.45 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 95.45 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 95.43 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 95.37 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 95.23 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 95.22 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 95.14 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 95.1 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 95.0 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 94.96 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 94.91 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 94.9 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 94.8 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 94.78 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 94.76 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 94.76 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 94.55 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 94.48 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.39 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 94.34 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 94.26 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 94.21 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 94.21 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 94.19 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.13 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 93.98 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.79 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 93.73 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 93.51 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.46 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 93.45 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 93.41 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 93.38 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 93.33 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 93.25 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 93.25 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 93.21 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 93.16 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 93.15 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.15 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 93.1 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 93.08 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 93.06 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 92.94 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 92.88 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 92.79 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 92.79 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 92.77 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 92.53 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 92.45 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 92.13 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 92.11 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 92.11 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 92.09 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 92.01 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 91.98 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 91.98 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 91.9 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 91.5 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 91.49 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 91.41 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 91.4 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 91.21 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 91.18 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 91.13 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 91.13 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 91.04 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 91.0 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 90.95 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 90.95 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 90.78 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 90.62 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 90.53 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 90.44 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 90.28 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 90.19 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 90.09 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 90.04 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 90.0 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 89.91 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 89.87 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 89.78 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 89.69 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 89.68 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 89.66 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 89.53 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 89.32 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 88.93 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 88.88 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 88.65 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 88.53 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 88.11 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 88.11 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 88.04 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 87.85 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 87.83 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 87.74 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 87.69 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 87.66 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 87.45 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 87.32 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 86.81 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 86.53 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 86.47 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 86.32 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 86.16 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 86.06 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 85.91 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 85.78 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 85.67 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 85.51 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 85.33 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 85.32 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 84.98 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 84.87 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 84.84 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 84.57 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 83.78 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 83.74 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 83.58 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 83.41 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 83.34 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 83.27 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 83.21 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 83.2 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 83.14 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 82.98 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 82.97 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 82.76 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 82.55 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 82.1 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 81.78 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 81.75 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 81.58 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 81.51 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 81.32 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 81.29 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 81.22 |
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=306.81 Aligned_cols=302 Identities=20% Similarity=0.194 Sum_probs=225.5
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.+++|+|||||||||||++|+++|++. +.+|++++|...... +.+..+.... . +....+++++.+|
T Consensus 22 ~~~~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~--~~~~~~~~~~--------~--~~~~~~~~~~~~D 87 (351)
T 3ruf_A 22 IFSPKTWLITGVAGFIGSNLLEKLLKL--NQVVIGLDNFSTGHQ--YNLDEVKTLV--------S--TEQWSRFCFIEGD 87 (351)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCSSCCH--HHHHHHHHTS--------C--HHHHTTEEEEECC
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCCCCch--hhhhhhhhcc--------c--cccCCceEEEEcc
Confidence 357899999999999999999999998 678999999765432 2222221100 0 0112689999999
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC--C
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK--E 212 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~--~ 212 (762)
+++++ ++..+++++|+|||+||..... ......+++|+.||.+++++|++. ++++|||+||+.+++. .
T Consensus 88 l~d~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~v~~SS~~vyg~~~~ 160 (351)
T 3ruf_A 88 IRDLT------TCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNA-QVQSFTYAASSSTYGDHPA 160 (351)
T ss_dssp TTCHH------HHHHHTTTCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGGTTCCC
T ss_pred CCCHH------HHHHHhcCCCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEecHHhcCCCCC
Confidence 99865 7899999999999999976543 345568899999999999999997 7899999999866543 3
Q ss_pred cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCC
Q psy7542 213 KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKD 291 (762)
Q Consensus 213 ~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~e 291 (762)
.+++|+....|. +.|+.||+.+|+++..+++. |++++|+||+.|||+...
T Consensus 161 ~~~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~ 211 (351)
T 3ruf_A 161 LPKVEENIGNPL-----------------------------SPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQD 211 (351)
T ss_dssp SSBCTTCCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCC
T ss_pred CCCccCCCCCCC-----------------------------ChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCC
Confidence 467776554443 78999999999999998776 999999999999999765
Q ss_pred CCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc-cCCCCCCceEEEecCCCCCcccHHH
Q psy7542 292 PLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF-LSNPGNTMRVINLTANKDFQITWYD 370 (762)
Q Consensus 292 P~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~-~~~~~~~~~iyNi~s~~~~piT~~e 370 (762)
+...|. .....++..+..|....++++++..+++|+|||+|++++.++... .. .+++||++++ .++|+.|
T Consensus 212 ~~~~~~---~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~----~~~~~ni~~~--~~~s~~e 282 (351)
T 3ruf_A 212 PNGAYA---AVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDSA----KDNIYNVAVG--DRTTLNE 282 (351)
T ss_dssp CCSTTC---CHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGGG----CSEEEEESCS--CCEEHHH
T ss_pred CCcchh---hHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhhcccc----CCCEEEeCCC--CcccHHH
Confidence 432110 112345666778887788899999999999999999999998872 32 4789999999 8999999
Q ss_pred HHHHHHHhhccCC-----CCccccccCCc----cc-----cc-cCCCchhhHHHHHHhhhhhhh
Q psy7542 371 IIENGKDIARNKV-----PLNNVLWYPGG----AM-----TN-RGYEPVLKRVHNRIKKGFDIF 419 (762)
Q Consensus 371 l~~~i~~~~G~~~-----P~~~~~w~p~~----~~-----~~-lG~kP~l~~l~~ki~~~~~~l 419 (762)
+++.+.+.+|... +.....+.+.. .. .. +||+|+. .+.+.+.+..+++
T Consensus 283 ~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-~~~~~l~~~~~~~ 345 (351)
T 3ruf_A 283 LSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAIDLLKYRPNI-KIREGLRLSMPWY 345 (351)
T ss_dssp HHHHHHHHHHTTCCC-----EEECCCTTCCSBCCBCCHHHHHHHCCCCCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccccccccccCCCCCccceeeeCHHHHHHHhCCCCCC-CHHHHHHHHHHHH
Confidence 9999999997621 11111111110 01 11 7888887 6777776655443
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=303.14 Aligned_cols=293 Identities=18% Similarity=0.183 Sum_probs=221.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.++|+|||||||||||++|+++|++.|+.++|+++.|....... ++++. .....+++++.+|+
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~-~~l~~----------------~~~~~~~~~~~~Dl 84 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNL-NNVKS----------------IQDHPNYYFVKGEI 84 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCG-GGGTT----------------TTTCTTEEEEECCT
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccch-hhhhh----------------hccCCCeEEEEcCC
Confidence 46899999999999999999999999766899999987633221 11111 11135899999999
Q ss_pred CCCCCCCCHHHHHhhcCC--ccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC-
Q psy7542 139 AVPDLGISAEDRQMLSET--IHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE- 212 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~--vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~- 212 (762)
++++ ++..++++ +|+|||+||..... ......+++|+.||.+++++|++. ++++|||+||+.+++..
T Consensus 85 ~d~~------~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~v~~SS~~vy~~~~ 157 (346)
T 4egb_A 85 QNGE------LLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKY-PHIKLVQVSTDEVYGSLG 157 (346)
T ss_dssp TCHH------HHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHS-TTSEEEEEEEGGGGCCCC
T ss_pred CCHH------HHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEeCchHHhCCCC
Confidence 9865 78888876 99999999987654 455678999999999999999998 78999999998666543
Q ss_pred --cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCC
Q psy7542 213 --KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIW 289 (762)
Q Consensus 213 --~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~ 289 (762)
.+++|+....|. +.|+.||+.+|+++..++.. |++++++||+.|||+.
T Consensus 158 ~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~ 208 (346)
T 4egb_A 158 KTGRFTEETPLAPN-----------------------------SPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPY 208 (346)
T ss_dssp SSCCBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTT
T ss_pred cCCCcCCCCCCCCC-----------------------------ChhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcC
Confidence 366776544443 78999999999999998876 9999999999999987
Q ss_pred CCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHH
Q psy7542 290 KDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWY 369 (762)
Q Consensus 290 ~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~ 369 (762)
..+. .....++..+..|....++++++..+++|+|+|+|++++.++..... +++||++++ +++|+.
T Consensus 209 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-----g~~~~i~~~--~~~s~~ 274 (346)
T 4egb_A 209 QYPE-------KLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGRV-----GEVYNIGGN--NEKTNV 274 (346)
T ss_dssp CCTT-------SHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHHHHHHHHHHCCT-----TCEEEECCS--CCEEHH
T ss_pred CCcc-------chHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHHHHHHHHhcCCC-----CCEEEECCC--CceeHH
Confidence 5421 12334666677787777788999999999999999999999987653 689999998 889999
Q ss_pred HHHHHHHHhhccCCCC-ccccccC--------Ccc-cc-ccCCCchhhHHHHHHhhhhhhh
Q psy7542 370 DIIENGKDIARNKVPL-NNVLWYP--------GGA-MT-NRGYEPVLKRVHNRIKKGFDIF 419 (762)
Q Consensus 370 el~~~i~~~~G~~~P~-~~~~w~p--------~~~-~~-~lG~kP~l~~l~~ki~~~~~~l 419 (762)
|+++.+.+.+|.+.+. ......+ +.. .. .+||+|+. .+.+.+.+..+++
T Consensus 275 e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-~~~e~l~~~~~~~ 334 (346)
T 4egb_A 275 EVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKMKNEFDWEPKY-TFEQGLQETVQWY 334 (346)
T ss_dssp HHHHHHHHHHTCCGGGCEEECC--CCCSCCCBCCHHHHHHHCCCCCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcccccccCCCCCCcceeeccHHHHHHHcCCCCCC-CHHHHHHHHHHHH
Confidence 9999999999765542 1110000 000 11 18999987 6777777655443
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-33 Score=296.65 Aligned_cols=278 Identities=18% Similarity=0.125 Sum_probs=218.5
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|+|||||||||||++|+++|+++ +.+|++++|.... .. ..+++++.+|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~-------------------------~~-~~~~~~~~~Dl~- 52 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKND--GNTPIILTRSIGN-------------------------KA-INDYEYRVSDYT- 52 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCCC-------------------------------CCEEEECCCC-
T ss_pred CCEEEEECCCcHHHHHHHHHHHhC--CCEEEEEeCCCCc-------------------------cc-CCceEEEEcccc-
Confidence 478999999999999999999998 6789999998321 11 237889999998
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--cccccc
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--KVLEEK 218 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~~i~E~ 218 (762)
++ ++.++++++|+|||+||..... .....+++|+.||.+++++|++. ++++|||+||..+++.. .+++|+
T Consensus 53 ~~------~~~~~~~~~d~Vih~a~~~~~~-~~~~~~~~n~~~~~~ll~a~~~~-~~~r~v~~SS~~vyg~~~~~~~~E~ 124 (311)
T 3m2p_A 53 LE------DLINQLNDVDAVVHLAATRGSQ-GKISEFHDNEILTQNLYDACYEN-NISNIVYASTISAYSDETSLPWNEK 124 (311)
T ss_dssp HH------HHHHHTTTCSEEEECCCCCCSS-SCGGGTHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGCCCGGGCSBCTT
T ss_pred HH------HHHHhhcCCCEEEEccccCCCC-ChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEccHHHhCCCCCCCCCCC
Confidence 65 7899999999999999988766 45678899999999999999997 78999999998666543 366776
Q ss_pred cCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCCCCCC
Q psy7542 219 TYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPGWT 297 (762)
Q Consensus 219 ~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~pGWi 297 (762)
....|. +.|+.||+.+|+++..++.. |++++|+||+.|||+...+.
T Consensus 125 ~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~---- 171 (311)
T 3m2p_A 125 ELPLPD-----------------------------LMYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYGFNEKNN---- 171 (311)
T ss_dssp SCCCCS-----------------------------SHHHHHHHHHHHHHHHHHHHSCCEEEEEEECEEECSCC--C----
T ss_pred CCCCCC-----------------------------chhHHHHHHHHHHHHHHHHHcCCCEEEEeeCceeCcCCCCC----
Confidence 544443 78999999999999998875 99999999999999875431
Q ss_pred CCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHH
Q psy7542 298 DNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKD 377 (762)
Q Consensus 298 dn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~ 377 (762)
.....++..+..|....++++++..+++++++|+|++++.++..... +++||++++ +++|+.|+++.+.+
T Consensus 172 ---~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~~-----~~~~~i~~~--~~~s~~e~~~~i~~ 241 (311)
T 3m2p_A 172 ---YMINRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKV-----SGTFNIGSG--DALTNYEVANTINN 241 (311)
T ss_dssp ---CHHHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTTCTTC-----CEEEEECCS--CEECHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHhcCCC-----CCeEEeCCC--CcccHHHHHHHHHH
Confidence 12345666777788888888999999999999999999999887643 689999998 89999999999999
Q ss_pred hhccCCCCccccc-cCC----cc-----ccc-cCCCchhhHHHHHHhhhhhhh
Q psy7542 378 IARNKVPLNNVLW-YPG----GA-----MTN-RGYEPVLKRVHNRIKKGFDIF 419 (762)
Q Consensus 378 ~~G~~~P~~~~~w-~p~----~~-----~~~-lG~kP~l~~l~~ki~~~~~~l 419 (762)
.+|.+.++..... .+. .. ... +||+|.. .+.+.+.+..+.+
T Consensus 242 ~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-~~~~~l~~~~~~~ 293 (311)
T 3m2p_A 242 AFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDY-NFATAVEEIHLLM 293 (311)
T ss_dssp HTTCTTCEEECSSSBCCSCCCBCBCCHHHHHHSCCCCSC-CHHHHHHHHHHHH
T ss_pred HhCCCCcceecCCCCCCCcCceecCHHHHHHHhCCCccc-CHHHHHHHHHHHH
Confidence 9976544322111 110 00 111 8999987 6777777655444
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-32 Score=290.57 Aligned_cols=298 Identities=16% Similarity=0.153 Sum_probs=219.8
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcch-HHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNS-RERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~-~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.+|+|||||||||||++|+++|++. +.+|+++.|....... .+++.+ ....++.++.+|+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~-----------------~~~~~~~~~~~Dl 64 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAH--GYDVVIADNLVNSKREAIARIEK-----------------ITGKTPAFHETDV 64 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHT--TCEEEEECCCSSSCTHHHHHHHH-----------------HHSCCCEEECCCT
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHC--CCcEEEEecCCcchHHHHHHHHh-----------------hcCCCceEEEeec
Confidence 5689999999999999999999998 7789999997654321 122211 1135789999999
Q ss_pred CCCCCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC--
Q psy7542 139 AVPDLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK-- 211 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~-- 211 (762)
++++ ++.++++ ++|+|||+||..... +.....+++|+.|+.+++++|++. ++++|||+||+.+++.
T Consensus 65 ~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~~g~~~ 137 (341)
T 3enk_A 65 SDER------ALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRER-AVKRIVFSSSATVYGVPE 137 (341)
T ss_dssp TCHH------HHHHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGBCSCS
T ss_pred CCHH------HHHHHHhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEecceEecCCC
Confidence 9865 7888877 899999999987543 334578899999999999999987 7889999999855543
Q ss_pred CcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--CCCEEEEeeeeeccCC
Q psy7542 212 EKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--GMPCMILRPSIIIPIW 289 (762)
Q Consensus 212 ~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--glpv~IvRPs~V~G~~ 289 (762)
..+++|+....|. +.|+.||+.+|++++.++.. +++++++||+.|||+.
T Consensus 138 ~~~~~e~~~~~~~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~ 188 (341)
T 3enk_A 138 RSPIDETFPLSAT-----------------------------NPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAH 188 (341)
T ss_dssp SSSBCTTSCCBCS-----------------------------SHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCC
T ss_pred CCCCCCCCCCCCC-----------------------------ChhHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCc
Confidence 3356676544333 78999999999999998765 5999999999999997
Q ss_pred CCCCCCCCCCC--CCchHHHHHHhcC--CeEEEee------CCCcccccccHHHHHHHHHHHhhcc--cCCCCCCceEEE
Q psy7542 290 KDPLPGWTDNI--NGPTGLLIGAGKG--IIRTMYC------DYSTCADFLPVDVLVNGVLLSTWNF--LSNPGNTMRVIN 357 (762)
Q Consensus 290 ~eP~pGWidn~--~gp~~li~~~~~G--~l~~i~g------d~~~~~d~VpVDdvA~aii~a~~~~--~~~~~~~~~iyN 357 (762)
...+.|...+. .....++.....+ ....+++ +++..+++|||+|+|++++.++... .. .+++||
T Consensus 189 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~----~~~~~n 264 (341)
T 3enk_A 189 ESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIHVVDLARGHIAALDALERRD----ASLTVN 264 (341)
T ss_dssp TTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHHHT----SCEEEE
T ss_pred cccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeEeeEEHHHHHHHHHHHHHhhhcCC----cceEEE
Confidence 65443432211 1122234444444 3344556 7889999999999999999998863 23 378999
Q ss_pred ecCCCCCcccHHHHHHHHHHhhccCCCCccccccCC--------cc-cc-ccCCCchhhHHHHHHhhhhhhh
Q psy7542 358 LTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPG--------GA-MT-NRGYEPVLKRVHNRIKKGFDIF 419 (762)
Q Consensus 358 i~s~~~~piT~~el~~~i~~~~G~~~P~~~~~w~p~--------~~-~~-~lG~kP~l~~l~~ki~~~~~~l 419 (762)
++++ +++|+.|+++.+.+.+|.+.++......+. .. .. .+||+|+. .+.+.+.+..+++
T Consensus 265 i~~~--~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-~l~~~l~~~~~~~ 333 (341)
T 3enk_A 265 LGTG--RGYSVLEVVRAFEKASGRAVPYELVARRPGDVAECYANPAAAAETIGWKAER-DLERMCADHWRWQ 333 (341)
T ss_dssp ESCS--CCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHHHHHCCCCCC-CHHHHHHHHHHHH
T ss_pred eCCC--CceeHHHHHHHHHHHhCCCcceeeCCCCCCCccccccCHHHHHHHcCCCCCC-CHHHHHHHHHHHH
Confidence 9998 899999999999999987655432221111 11 11 18999987 7888877755544
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=298.74 Aligned_cols=269 Identities=16% Similarity=0.137 Sum_probs=206.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|||||||||||++|+++|+++ ++.+|++++|...... + .....+++++.+|+
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~-~g~~V~~~~r~~~~~~------~----------------~~~~~~v~~~~~Dl 78 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILET-TDWEVFGMDMQTDRLG------D----------------LVKHERMHFFEGDI 78 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHH-SSCEEEEEESCCTTTG------G----------------GGGSTTEEEEECCT
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhC-CCCEEEEEeCChhhhh------h----------------hccCCCeEEEeCcc
Confidence 57899999999999999999999998 4678999999764321 0 01126899999999
Q ss_pred C-CCCCCCCHHHHHhhcCCccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC--C
Q psy7542 139 A-VPDLGISAEDRQMLSETIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK--E 212 (762)
Q Consensus 139 ~-~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~--~ 212 (762)
+ +++ .+.++++++|+|||+||..... .+....+++|+.||.+++++|++. + ++|||+||+.+++. .
T Consensus 79 ~~d~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~-~~~v~~SS~~vyg~~~~ 150 (372)
T 3slg_A 79 TINKE------WVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKY-G-KHLVFPSTSEVYGMCAD 150 (372)
T ss_dssp TTCHH------HHHHHHHHCSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHH-T-CEEEEECCGGGGBSCCC
T ss_pred CCCHH------HHHHHhccCCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHh-C-CcEEEeCcHHHhCCCCC
Confidence 9 544 7888888999999999987643 345578899999999999999998 5 89999999866554 3
Q ss_pred cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCC
Q psy7542 213 KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDP 292 (762)
Q Consensus 213 ~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP 292 (762)
.++.|+..+.+.+|. ....+.|+.||+.+|++++.++..|++++|+||+.|||+...+
T Consensus 151 ~~~~e~~~~~~~~p~----------------------~~p~~~Y~~sK~~~E~~~~~~~~~g~~~~ilRp~~v~G~~~~~ 208 (372)
T 3slg_A 151 EQFDPDASALTYGPI----------------------NKPRWIYACSKQLMDRVIWGYGMEGLNFTLFRPFNWIGPGLDS 208 (372)
T ss_dssp SSBCTTTCCEEECCT----------------------TCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSEECSSCCC
T ss_pred CCCCccccccccCCC----------------------CCCCCcHHHHHHHHHHHHHHHHHCCCCEEEEccccccCCCccc
Confidence 355565433111110 0111589999999999999987668999999999999998765
Q ss_pred CCCCCCCCCC-chHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC-CCCCcccHHH
Q psy7542 293 LPGWTDNING-PTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA-NKDFQITWYD 370 (762)
Q Consensus 293 ~pGWidn~~g-p~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s-~~~~piT~~e 370 (762)
..++.....+ ...++..+..|....++++++..+++|+|+|+|++++.++...... ..+++||+++ + +++|+.|
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~--~~~~~~ni~~~~--~~~s~~e 284 (372)
T 3slg_A 209 IYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISALMKIIENSNGV--ATGKIYNIGNPN--NNFSVRE 284 (372)
T ss_dssp TTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEEHHHHHHHHHHHHHCGGGT--TTTEEEEECCTT--CEEEHHH
T ss_pred ccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEEEHHHHHHHHHHHHhcccCc--CCCceEEeCCCC--CCccHHH
Confidence 3322221111 2345566678887788889999999999999999999999876510 1478999999 5 6899999
Q ss_pred HHHHHHHhhccCCC
Q psy7542 371 IIENGKDIARNKVP 384 (762)
Q Consensus 371 l~~~i~~~~G~~~P 384 (762)
+++.+.+.+|.+.+
T Consensus 285 ~~~~i~~~~g~~~~ 298 (372)
T 3slg_A 285 LANKMLELAAEFPE 298 (372)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHhCCCcc
Confidence 99999999986544
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-32 Score=293.00 Aligned_cols=288 Identities=16% Similarity=0.129 Sum_probs=215.1
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
-.++|+|||||||||||++|+++|++. +.+|++++|.... .+++++.+|
T Consensus 16 ~~~~~~vlVtGatG~iG~~l~~~L~~~--G~~V~~~~r~~~~-----------------------------~~~~~~~~D 64 (347)
T 4id9_A 16 PRGSHMILVTGSAGRVGRAVVAALRTQ--GRTVRGFDLRPSG-----------------------------TGGEEVVGS 64 (347)
T ss_dssp -----CEEEETTTSHHHHHHHHHHHHT--TCCEEEEESSCCS-----------------------------SCCSEEESC
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhC--CCEEEEEeCCCCC-----------------------------CCccEEecC
Confidence 357899999999999999999999998 6788999997532 467889999
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEcccccCccc-cHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC----C
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAATVRFDD-YMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK----E 212 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~-~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~----~ 212 (762)
+++++ ++..+++++|+|||+||...... .....+++|+.||.+++++|++. ++++|||+||+++++. .
T Consensus 65 l~d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~-~~~~~V~~SS~~vyg~~~~~~ 137 (347)
T 4id9_A 65 LEDGQ------ALSDAIMGVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAA-GVRRFVFASSGEVYPENRPEF 137 (347)
T ss_dssp TTCHH------HHHHHHTTCSEEEECCCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGTTTTSCSS
T ss_pred cCCHH------HHHHHHhCCCEEEECCcccCcchhhHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEECCHHHhCCCCCCC
Confidence 99865 78889999999999999877653 34789999999999999999997 7899999999866654 2
Q ss_pred cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeec-----
Q psy7542 213 KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIII----- 286 (762)
Q Consensus 213 ~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~----- 286 (762)
.++.|+....|. +.|+.||+.+|+++..++.. +++++|+||+.||
T Consensus 138 ~~~~E~~~~~~~-----------------------------~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~ 188 (347)
T 4id9_A 138 LPVTEDHPLCPN-----------------------------SPYGLTKLLGEELVRFHQRSGAMETVILRFSHTQDATEL 188 (347)
T ss_dssp SSBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHSSSEEEEEEECEEECGGGT
T ss_pred CCcCCCCCCCCC-----------------------------ChHHHHHHHHHHHHHHHHHhcCCceEEEccceEeecccc
Confidence 356666544433 78999999999999998776 8999999999999
Q ss_pred --------cCCCCCCCCCCC----CCCCchHHHHHHhcCCeEEEeeCCCccccc----ccHHHHHHHHHHHhhcccCCCC
Q psy7542 287 --------PIWKDPLPGWTD----NINGPTGLLIGAGKGIIRTMYCDYSTCADF----LPVDVLVNGVLLSTWNFLSNPG 350 (762)
Q Consensus 287 --------G~~~eP~pGWid----n~~gp~~li~~~~~G~l~~i~gd~~~~~d~----VpVDdvA~aii~a~~~~~~~~~ 350 (762)
|+...+.+.+.+ .......++..+..|....++++++..+++ ++|+|+|++++.++.....
T Consensus 189 ~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~~--- 265 (347)
T 4id9_A 189 LDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHILARNENGRPFRMHITDTRDMVAGILLALDHPEA--- 265 (347)
T ss_dssp TCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEEEEECTTCCBCEECEEEHHHHHHHHHHHHHCGGG---
T ss_pred cccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEEeCCCCcccCCccCcEeHHHHHHHHHHHhcCccc---
Confidence 442111000000 000012244556677776788899999999 9999999999999998744
Q ss_pred CCceEEEecCCCCCcccHHHHHHHHHHhhccCCCCccccccC------Cccccc-cCCCchhhHHHHHHhhhhhhh
Q psy7542 351 NTMRVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYP------GGAMTN-RGYEPVLKRVHNRIKKGFDIF 419 (762)
Q Consensus 351 ~~~~iyNi~s~~~~piT~~el~~~i~~~~G~~~P~~~~~w~p------~~~~~~-lG~kP~l~~l~~ki~~~~~~l 419 (762)
.+++||++++ +++|+.|+++.+.+.+|.+.+.......+ ...... +||+|+. .+.+.+.+..+.+
T Consensus 266 -~~~~~ni~~~--~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~d~~k~~~~lG~~p~~-~~~~~l~~~~~~~ 337 (347)
T 4id9_A 266 -AGGTFNLGAD--EPADFAALLPKIAALTGLPIVTVDFPGDGVYYHTSNERIRNTLGFEAEW-TMDRMLEEAATAR 337 (347)
T ss_dssp -TTEEEEESCS--SCEEHHHHHHHHHHHHCCCEEEEECSSCCCBCCBCCHHHHHHHCCCCCC-CHHHHHHHHHHHH
T ss_pred -CCCeEEECCC--CcccHHHHHHHHHHHhCCCCceeeCCCcccccccCHHHHHHHhCCCCCC-CHHHHHHHHHHHH
Confidence 3789999999 89999999999999997654432111111 111111 8999987 6777776655443
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-33 Score=314.87 Aligned_cols=299 Identities=21% Similarity=0.301 Sum_probs=217.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCC-CcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCE-NVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp-~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.++|+|||||||||||++|+++|++..+ +.+|++++|......+.+|+.+.+.....+.+.... .....+++++.||
T Consensus 71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~v~~v~~D 148 (478)
T 4dqv_A 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFK--ELAADRLEVVAGD 148 (478)
T ss_dssp SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHH--HHHTTTEEEEECC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhh--hhccCceEEEEeE
Confidence 4789999999999999999999999844 469999999987776777877766543222222211 2234789999999
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--ccc
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--KVL 215 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~~i 215 (762)
++++.+|++.+++..+++++|+|||+||.+++ .++...+++|+.||.+++++|++. ++++|||+||+++++.. ..+
T Consensus 149 l~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~-~~~~~~~~~Nv~gt~~ll~aa~~~-~~~~~V~iSS~~v~~~~~~~~~ 226 (478)
T 4dqv_A 149 KSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA-FPYHELFGPNVAGTAELIRIALTT-KLKPFTYVSTADVGAAIEPSAF 226 (478)
T ss_dssp TTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB-SSCCEEHHHHHHHHHHHHHHHTSS-SCCCEEEEEEGGGGTTSCTTTC
T ss_pred CCCcccCCCHHHHHHHHcCCCEEEECccccCC-cCHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEeehhhcCccCCCCc
Confidence 99999999999999999999999999999887 666778999999999999999986 78999999998665432 244
Q ss_pred ccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCCC
Q psy7542 216 EEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLP 294 (762)
Q Consensus 216 ~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~p 294 (762)
.|+....|.++ +......+++.|+.||+++|.+++++++. |++++|+|||+|||+.... .
T Consensus 227 ~E~~~~~p~~~------------------~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~-g 287 (478)
T 4dqv_A 227 TEDADIRVISP------------------TRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYA-G 287 (478)
T ss_dssp CSSSCHHHHCC------------------EEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSS-S
T ss_pred CCcccccccCc------------------ccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccC-C
Confidence 44322111110 00122345588999999999999999875 9999999999999985421 0
Q ss_pred CCCCCCCC-chHHHH-HHhcCCeEEE-eeC------CCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCc
Q psy7542 295 GWTDNING-PTGLLI-GAGKGIIRTM-YCD------YSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQ 365 (762)
Q Consensus 295 GWidn~~g-p~~li~-~~~~G~l~~i-~gd------~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~p 365 (762)
.| +... ...++. ....|..+.. .++ ++..+++|||||+|++++.++..........+++||++++..++
T Consensus 288 ~~--~~~~~~~~l~~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~~~ynv~~~~~~~ 365 (478)
T 4dqv_A 288 QL--NMSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGFATYHVMNPHDDG 365 (478)
T ss_dssp CC--CTTBHHHHHHHHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSEEEEEESCCCCSS
T ss_pred cC--CHHHHHHHHHHHHHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCCC
Confidence 01 1111 112222 2233443322 211 26788999999999999999886321112257899999983334
Q ss_pred ccHHHHHHHHHHhhccCC
Q psy7542 366 ITWYDIIENGKDIARNKV 383 (762)
Q Consensus 366 iT~~el~~~i~~~~G~~~ 383 (762)
+||.|+++.+.+. |.+.
T Consensus 366 ~s~~el~~~l~~~-g~~~ 382 (478)
T 4dqv_A 366 IGLDEYVDWLIEA-GYPI 382 (478)
T ss_dssp CSHHHHHHHHHHT-TCSC
T ss_pred cCHHHHHHHHHHc-CCCc
Confidence 9999999999997 4543
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-32 Score=286.64 Aligned_cols=284 Identities=15% Similarity=0.120 Sum_probs=208.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|||||||||||++|+++|++.++ +.. .....++.+.+|+
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--------~~~----------------------------~~~~~~~~~~~D~ 47 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGAG--------LPG----------------------------EDWVFVSSKDADL 47 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTTC--------CTT----------------------------CEEEECCTTTCCT
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcCC--------ccc----------------------------ccccccCceeccc
Confidence 5789999999999999999999999853 111 0113445567899
Q ss_pred CCCCCCCCHHHHHhhcCC--ccEEEEcccccCc----cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC
Q psy7542 139 AVPDLGISAEDRQMLSET--IHIVYHIAATVRF----DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE 212 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~--vDiViH~AA~v~f----~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~ 212 (762)
++++ ++.+++++ +|+|||+||.+.. .+.....+++|+.||.+++++|++. ++++|||+||+++++..
T Consensus 48 ~d~~------~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~-~~~~~v~~SS~~vyg~~ 120 (319)
T 4b8w_A 48 TDTA------QTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEV-GARKVVSCLSTCIFPDK 120 (319)
T ss_dssp TSHH------HHHHHHHHSCCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEECCGGGSCSS
T ss_pred CCHH------HHHHHHhhcCCCEEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEEcchhhcCCC
Confidence 8765 67777776 9999999998652 3456678999999999999999997 78999999999666543
Q ss_pred --cccccccCCC-CCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccC
Q psy7542 213 --KVLEEKTYPP-PVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPI 288 (762)
Q Consensus 213 --~~i~E~~~~~-p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~ 288 (762)
.+++|+.... +..| ...+|+.||+.+|+++..+++. +++++|+||+.|||+
T Consensus 121 ~~~~~~E~~~~~~~~~p-------------------------~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp 175 (319)
T 4b8w_A 121 TTYPIDETMIHNGPPHN-------------------------SNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGP 175 (319)
T ss_dssp CCSSBCGGGGGBSCCCS-------------------------SSHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECT
T ss_pred CCCCccccccccCCCCC-------------------------CcchHHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCC
Confidence 3566654110 1111 0126999999999999998776 999999999999999
Q ss_pred CCCCCCCCCCCCCCchHHHHH----HhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCC
Q psy7542 289 WKDPLPGWTDNINGPTGLLIG----AGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDF 364 (762)
Q Consensus 289 ~~eP~pGWidn~~gp~~li~~----~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~ 364 (762)
...+..+. ......++.. +..|....++++++..+++|+|+|+|++++.++...... .+++||++++ .
T Consensus 176 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~---~~~~~ni~~~--~ 247 (319)
T 4b8w_A 176 HDNFNIED---GHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNEV---EPIILSVGEE--D 247 (319)
T ss_dssp TCCCCTTT---SCHHHHHHHHHHHHHHHTCCEEEESCSCCEECEEEHHHHHHHHHHHHHHCCCS---SCEEECCCGG--G
T ss_pred CCCCCCcc---ccccHHHHHHHHHHhccCCceEEeCCCCeeEEEEeHHHHHHHHHHHHhccccC---CceEEEecCC--C
Confidence 76542210 0111233444 667777778899999999999999999999999875431 4679999998 8
Q ss_pred cccHHHHHHHHHHhhccCCCCccccccCCc----cc-----cc-cCCCchhhHHHHHHhhhhhhh
Q psy7542 365 QITWYDIIENGKDIARNKVPLNNVLWYPGG----AM-----TN-RGYEPVLKRVHNRIKKGFDIF 419 (762)
Q Consensus 365 piT~~el~~~i~~~~G~~~P~~~~~w~p~~----~~-----~~-lG~kP~l~~l~~ki~~~~~~l 419 (762)
++|+.|+++.+.+.+|.+.++......+.. .. .. +||+|.. .+.+.+.+..+++
T Consensus 248 ~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~-~~~~~l~~~~~~~ 311 (319)
T 4b8w_A 248 EVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTYLPDFRFT-PFKQAVKETCAWF 311 (319)
T ss_dssp CEEHHHHHHHHHHHTTCCSCEEEETTSCCCCSCCCBCCHHHHHHCTTCCCC-CHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHHhCCCCcEEeCCCCCcCcccccCCHHHHHHhcCCCCCC-CHHHHHHHHHHHH
Confidence 999999999999999866544322111110 01 11 8888876 6777776655443
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=284.02 Aligned_cols=245 Identities=15% Similarity=0.156 Sum_probs=192.3
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++. +.+|+++.|...... .....+++++.+|+.++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~-----------------------~~~~~~~~~~~~Dl~d~ 55 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVEL--GYEVVVVDNLSSGRR-----------------------EFVNPSAELHVRDLKDY 55 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEECCCSSCCG-----------------------GGSCTTSEEECCCTTST
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CCEEEEEeCCCCCch-----------------------hhcCCCceEEECccccH
Confidence 68999999999999999999998 678999999765421 11235789999999987
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--cccc
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--KVLE 216 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~~i~ 216 (762)
+ +.+++++ |+|||+||.... .+.....+++|+.||.+++++|++. ++++|||+||+.+++.. .+++
T Consensus 56 ~-------~~~~~~~-d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~vyg~~~~~~~~ 126 (312)
T 3ko8_A 56 S-------WGAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQT-GVRTVVFASSSTVYGDADVIPTP 126 (312)
T ss_dssp T-------TTTTCCC-SEEEECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCSCSSSSBC
T ss_pred H-------HHhhcCC-CEEEECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeCcHHHhCCCCCCCCC
Confidence 5 3455566 999999996542 3456778999999999999999987 78899999998665443 3667
Q ss_pred cccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCCCC
Q psy7542 217 EKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPG 295 (762)
Q Consensus 217 E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~pG 295 (762)
|+....|. +.|+.||+.+|++++.++.. |++++++||+.|||+...+
T Consensus 127 e~~~~~p~-----------------------------~~Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~g~~~~~--- 174 (312)
T 3ko8_A 127 EEEPYKPI-----------------------------SVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPRLRH--- 174 (312)
T ss_dssp TTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCS---
T ss_pred CCCCCCCC-----------------------------ChHHHHHHHHHHHHHHHHHHhCCCEEEEeeccccCcCCCC---
Confidence 76444433 78999999999999998876 9999999999999986431
Q ss_pred CCCCCCCchHHHHHHhcC-CeEEEeeCCCcccccccHHHHHHHHHHHhhc---ccCCCCCCceEEEecCCCCCcccHHHH
Q psy7542 296 WTDNINGPTGLLIGAGKG-IIRTMYCDYSTCADFLPVDVLVNGVLLSTWN---FLSNPGNTMRVINLTANKDFQITWYDI 371 (762)
Q Consensus 296 Widn~~gp~~li~~~~~G-~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~---~~~~~~~~~~iyNi~s~~~~piT~~el 371 (762)
.....++..+..+ ....+.++++..+++++++|+|++++.++.+ ... .+++||++++ +++|+.|+
T Consensus 175 -----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~----~~~~~ni~~~--~~~s~~e~ 243 (312)
T 3ko8_A 175 -----GVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDA----PFLALNVGNV--DAVRVLDI 243 (312)
T ss_dssp -----SHHHHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHHHSCC----SEEEEEESCS--SCEEHHHH
T ss_pred -----ChHHHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhccccCC----CCcEEEEcCC--CceeHHHH
Confidence 1123455555555 4455788889999999999999999999987 222 4789999998 89999999
Q ss_pred HHHHHHhhccCC
Q psy7542 372 IENGKDIARNKV 383 (762)
Q Consensus 372 ~~~i~~~~G~~~ 383 (762)
++.+.+.+|.+.
T Consensus 244 ~~~i~~~~g~~~ 255 (312)
T 3ko8_A 244 AQIVAEVLGLRP 255 (312)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHhCCCC
Confidence 999999997654
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=291.42 Aligned_cols=301 Identities=17% Similarity=0.111 Sum_probs=220.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|||||||||||++|+++|++.+.+.+|++++|.........+..+.+.. .. .....++.++.+|+
T Consensus 8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--------~~--~~~~~~~~~~~~Dl 77 (362)
T 3sxp_A 8 LENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGH--------FK--NLIGFKGEVIAADI 77 (362)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCC--------GG--GGTTCCSEEEECCT
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhh--------hh--hccccCceEEECCC
Confidence 478999999999999999999999943378999999976532111111000000 00 11235689999999
Q ss_pred CCCCCCCCHHHHHhh-cCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc-cc
Q psy7542 139 AVPDLGISAEDRQML-SETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK-VL 215 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l-~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~-~i 215 (762)
++++ ++..+ ..++|+|||+||.... ...+...+++|+.||.+++++|++. +++ |||+||+.+++... ++
T Consensus 78 ~d~~------~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~~~-~V~~SS~~vyg~~~~~~ 149 (362)
T 3sxp_A 78 NNPL------DLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSK-KAK-VIYASSAGVYGNTKAPN 149 (362)
T ss_dssp TCHH------HHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHT-TCE-EEEEEEGGGGCSCCSSB
T ss_pred CCHH------HHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHc-CCc-EEEeCcHHHhCCCCCCC
Confidence 9865 78887 7899999999997764 3667889999999999999999987 666 99999975554332 66
Q ss_pred ccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCC
Q psy7542 216 EEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPG 295 (762)
Q Consensus 216 ~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pG 295 (762)
+|+....|. +.|+.||+.+|.+++.++. .++++++||+.|||+...+...
T Consensus 150 ~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~~~-~~~~~~lR~~~v~Gp~~~~~~~ 199 (362)
T 3sxp_A 150 VVGKNESPE-----------------------------NVYGFSKLCMDEFVLSHSN-DNVQVGLRYFNVYGPREFYKEK 199 (362)
T ss_dssp CTTSCCCCS-----------------------------SHHHHHHHHHHHHHHHTTT-TSCEEEEEECSEESTTCGGGGG
T ss_pred CCCCCCCCC-----------------------------ChhHHHHHHHHHHHHHHhc-cCCEEEEEeCceeCcCCCCCCc
Confidence 676544443 7899999999999999977 4999999999999987543211
Q ss_pred CCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHH
Q psy7542 296 WTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENG 375 (762)
Q Consensus 296 Widn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i 375 (762)
| ......++..+..|....++++++..+++++++|+|++++.++..... + +||++++ .++|+.|+++.+
T Consensus 200 ~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ai~~~~~~~~~-----g-~~~i~~~--~~~s~~e~~~~i 268 (362)
T 3sxp_A 200 T---ASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVKAMKAQKS-----G-VYNVGYS--QARSYNEIVSIL 268 (362)
T ss_dssp G---SCHHHHHHHHHHTTSEEECSGGGCCEEECEEHHHHHHHHHHHTTCSSC-----E-EEEESCS--CEEEHHHHHHHH
T ss_pred c---hhHHHHHHHHHHhCCCeEEECCCCeEEccEEHHHHHHHHHHHHhcCCC-----C-EEEeCCC--CCccHHHHHHHH
Confidence 0 011234566777788777778899999999999999999999886543 5 9999998 899999999999
Q ss_pred HHhhccCCCCcccc-ccCC----cccc------ccCCCchhhHHHHHHhhhhhhhc
Q psy7542 376 KDIARNKVPLNNVL-WYPG----GAMT------NRGYEPVLKRVHNRIKKGFDIFE 420 (762)
Q Consensus 376 ~~~~G~~~P~~~~~-w~p~----~~~~------~lG~kP~l~~l~~ki~~~~~~l~ 420 (762)
.+.+| +.++.... +++. .... .+||+|.. .+.+.+.+..+++.
T Consensus 269 ~~~~g-~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-~l~e~l~~~~~~~~ 322 (362)
T 3sxp_A 269 KEHLG-DFKVTYIKNPYAFFQKHTQAHIEPTILDLDYTPLY-DLESGIKDYLPHIH 322 (362)
T ss_dssp HHHHC-CCEEECCC-------CCCCBCCHHHHHHHCCCCCC-CHHHHHHHHHHHHT
T ss_pred HHHcC-CCceEECCCCCcCcccceecCHHHHHHHhCCCCCC-CHHHHHHHHHHHHH
Confidence 99997 43322111 1000 0010 18999987 77888877665554
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.98 E-value=5.5e-31 Score=283.82 Aligned_cols=292 Identities=19% Similarity=0.193 Sum_probs=213.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+|||||||||||++|+++|++.+++++|+++.|....... +.+.++ ....+++++.+|++
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~-~~~~~~----------------~~~~~~~~~~~Dl~ 64 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNP-ANLKDL----------------EDDPRYTFVKGDVA 64 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCG-GGGTTT----------------TTCTTEEEEECCTT
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCch-hHHhhh----------------ccCCceEEEEcCCC
Confidence 5688999999999999999999999656799999997532111 111100 01357899999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC--Ccc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK--EKV 214 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~--~~~ 214 (762)
+++ ++.+++.++|+|||+||..... ++....+++|+.||.+++++|.+.+..++|||+||..+++. ..+
T Consensus 65 d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~ 138 (336)
T 2hun_A 65 DYE------LVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGS 138 (336)
T ss_dssp CHH------HHHHHHHTCSEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSC
T ss_pred CHH------HHHHHhhCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCC
Confidence 865 7888888999999999986532 34567899999999999999998733479999999865543 335
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPL 293 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~ 293 (762)
++|+....|. +.|+.||+.+|++++.++.. |++++++||+.|||+...+.
T Consensus 139 ~~E~~~~~~~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~ 189 (336)
T 2hun_A 139 FTENDRLMPS-----------------------------SPYSATKAASDMLVLGWTRTYNLNASITRCTNNYGPYQFPE 189 (336)
T ss_dssp BCTTBCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCTT
T ss_pred cCCCCCCCCC-----------------------------CccHHHHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCcC
Confidence 6665433332 68999999999999998775 99999999999999865320
Q ss_pred CCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHH
Q psy7542 294 PGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIE 373 (762)
Q Consensus 294 pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~ 373 (762)
.....++..+..|....++++++...++++++|+|++++.++.... .+++||++++ .++|+.|+++
T Consensus 190 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~-----~g~~~~v~~~--~~~s~~e~~~ 255 (336)
T 2hun_A 190 -------KLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKGE-----SREIYNISAG--EEKTNLEVVK 255 (336)
T ss_dssp -------SHHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHHHHHCC-----TTCEEEECCS--CEECHHHHHH
T ss_pred -------chHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHHHhCCC-----CCCEEEeCCC--CcccHHHHHH
Confidence 1122345556677666677888889999999999999999987643 3689999998 8899999999
Q ss_pred HHHHhhccCCCCccc-cccC----Ccccc-----c-cCCCchhhHHHHHHhhhhhh
Q psy7542 374 NGKDIARNKVPLNNV-LWYP----GGAMT-----N-RGYEPVLKRVHNRIKKGFDI 418 (762)
Q Consensus 374 ~i~~~~G~~~P~~~~-~w~p----~~~~~-----~-lG~kP~l~~l~~ki~~~~~~ 418 (762)
.+.+.+|.+.|.... .-.+ ...+. . +||+|.. .+.+.+.+.+++
T Consensus 256 ~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-~~~~~l~~~~~~ 310 (336)
T 2hun_A 256 IILRLMGKGEELIELVEDRPGHDLRYSLDSWKITRDLKWRPKY-TFDEGIKKTIDW 310 (336)
T ss_dssp HHHHHTTCCSTTEEEECCCTTCCCCCCBCCHHHHHHHCCCCSS-CHHHHHHHHHHH
T ss_pred HHHHHhCCCcccccccCCCCCchhhhcCCHHHHHHHhCCCCCC-CHHHHHHHHHHH
Confidence 999999765442110 0001 00111 1 8999976 577777765543
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.9e-31 Score=286.90 Aligned_cols=298 Identities=20% Similarity=0.181 Sum_probs=220.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|||||||||||++|+++|++. +.+|++++|..... .+++.++.+ .+. .....+++++.+|+
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~--~~~~~~~~~-----~~~-----~~~~~~~~~~~~Dl 90 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKL--DQKVVGLDNFATGH--QRNLDEVRS-----LVS-----EKQWSNFKFIQGDI 90 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCSSCC--HHHHHHHHH-----HSC-----HHHHTTEEEEECCT
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCCccc--hhhHHHHhh-----hcc-----cccCCceEEEECCC
Confidence 47899999999999999999999998 67899999975432 223332211 000 00125789999999
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--c
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--K 213 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~ 213 (762)
++++ ++.++++++|+|||+||..... ..+...+++|+.||.+++++|++. ++++|||+||..+++.. .
T Consensus 91 ~d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~~~~ 163 (352)
T 1sb8_A 91 RNLD------DCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-KVQSFTYAASSSTYGDHPGL 163 (352)
T ss_dssp TSHH------HHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGGTTCCCS
T ss_pred CCHH------HHHHHhcCCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccHHhcCCCCCC
Confidence 9865 7888889999999999976532 355678999999999999999987 78999999998766543 3
Q ss_pred ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCC
Q psy7542 214 VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDP 292 (762)
Q Consensus 214 ~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP 292 (762)
+++|+..+.|. +.|+.||+.+|.+++.++.. |++++++||+.|||+...+
T Consensus 164 ~~~E~~~~~~~-----------------------------~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~ 214 (352)
T 1sb8_A 164 PKVEDTIGKPL-----------------------------SPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDP 214 (352)
T ss_dssp SBCTTCCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCC
T ss_pred CCCCCCCCCCC-----------------------------ChhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCC
Confidence 56666444333 78999999999999988765 9999999999999987643
Q ss_pred CCCCCCCCCC-chHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc-cCCCCCCceEEEecCCCCCcccHHH
Q psy7542 293 LPGWTDNING-PTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF-LSNPGNTMRVINLTANKDFQITWYD 370 (762)
Q Consensus 293 ~pGWidn~~g-p~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~-~~~~~~~~~iyNi~s~~~~piT~~e 370 (762)
...| .. ...++..+..|....++++++..+++++++|+|++++.++... .. .+++||++++ .++|+.|
T Consensus 215 ~~~~----~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~----~~~~~ni~~~--~~~s~~e 284 (352)
T 1sb8_A 215 NGAY----AAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDA----RNQVYNIAVG--GRTSLNQ 284 (352)
T ss_dssp CSTT----CCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGGG----CSEEEEESCS--CCEEHHH
T ss_pred Ccch----hhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhccccC----CCceEEeCCC--CCccHHH
Confidence 2111 11 1234555667776677889999999999999999999888762 22 3689999998 8999999
Q ss_pred HHHHHHHhh---ccCCCCccccccCC-------cccc-----c-cCCCchhhHHHHHHhhhhhh
Q psy7542 371 IIENGKDIA---RNKVPLNNVLWYPG-------GAMT-----N-RGYEPVLKRVHNRIKKGFDI 418 (762)
Q Consensus 371 l~~~i~~~~---G~~~P~~~~~w~p~-------~~~~-----~-lG~kP~l~~l~~ki~~~~~~ 418 (762)
+++.+.+.+ |.+.+... .|.+. .... . +||+|+. .+.+.+.+..++
T Consensus 285 ~~~~i~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-~~~e~l~~~~~~ 346 (352)
T 1sb8_A 285 LFFALRDGLAENGVSYHREP-VYRDFREGDVRHSLADISKAAKLLGYAPKY-DVSAGVALAMPW 346 (352)
T ss_dssp HHHHHHHHHHHTTCCCCCCC-EEECCCTTCCSBCCBCCHHHHHHTCCCCCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCc-eecCCCccchhhccCCHHHHHHHhCCCCCC-CHHHHHHHHHHH
Confidence 999999998 76654221 11110 0000 1 7888876 666666664443
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.98 E-value=9.9e-32 Score=307.82 Aligned_cols=336 Identities=15% Similarity=0.128 Sum_probs=228.0
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
..|+|||||||||||++|+++|++. +.+|+|++|......+.+|+.+.++........ .....+++++.||++
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~--g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~~~v~~v~~Dl~ 221 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGY--SHRIYCFIRADNEEIAWYKLMTNLNDYFSEETV-----EMMLSNIEVIVGDFE 221 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTT--EEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHH-----HHHSTTEEEEEEBTT
T ss_pred CCCeEEEECCccchHHHHHHHHHhc--CCEEEEEECCCChHHHHHHHHHHHHHhcccccc-----hhccCceEEEecCCc
Confidence 4589999999999999999999665 679999999887665666776554321100001 123478999999999
Q ss_pred C-CCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC-------
Q psy7542 140 V-PDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK------- 211 (762)
Q Consensus 140 ~-~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~------- 211 (762)
+ +.++ +..++|+||||||.+++..++....++|+.||.+++++|++ +.++|||+||.++ +.
T Consensus 222 d~~~l~--------~~~~~D~Vih~Aa~~~~~~~~~~~~~~Nv~gt~~ll~~a~~--~~~~~v~iSS~~v-G~~~~~~~~ 290 (508)
T 4f6l_B 222 CMDDVV--------LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVSTISV-GTYFDIDTE 290 (508)
T ss_dssp BCSSCC--------CSSCCSEEEECCCC--------CCHHHHHHHHHHHHHHHHT--TTCEEEEEEESCT-TSEECTTCS
T ss_pred ccccCC--------CccCCCEEEECCceecCCCCHHHHhhhHHHHHHHHHHHHHh--CCCcEEEeCChhh-ccCCccCCc
Confidence 9 5553 66889999999999988888888999999999999999998 5689999999987 32
Q ss_pred CcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCC
Q psy7542 212 EKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKD 291 (762)
Q Consensus 212 ~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~e 291 (762)
..+++|+....+. ...+.|+.||+.+|+++.++++.|++++|+||+.|+|+...
T Consensus 291 ~~~~~E~~~~~~~--------------------------~~~~~Y~~sK~~~E~~~~~~~~~gi~~~ilRp~~v~G~~~~ 344 (508)
T 4f6l_B 291 DVTFSEADVYKGQ--------------------------LLTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNG 344 (508)
T ss_dssp CCEECTTCSCSSB--------------------------CCCSHHHHHHHHHHHHHHHHHHTTCEEEEEEECCEESCSSS
T ss_pred Ccccccccccccc--------------------------cCCCcHHHHHHHHHHHHHHHHHcCCCEEEEecceeccCCCC
Confidence 1244554332111 12389999999999999998766999999999999999764
Q ss_pred CCCCCCCCCCC--chHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHH
Q psy7542 292 PLPGWTDNING--PTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWY 369 (762)
Q Consensus 292 P~pGWidn~~g--p~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~ 369 (762)
+. +..+... ...++..+..+... ..++++..++++||||+|++++.++..... +++||++++ ++++|.
T Consensus 345 ~~--~~~~~~~~~~~~~i~~~~~~~~~-~~~~g~~~~~~v~v~DvA~ai~~~~~~~~~-----~~~~nl~~~--~~~s~~ 414 (508)
T 4f6l_B 345 RW--HMRNIKTNRFSMVMNDLLQLDCI-GVSMAEMPVDFSFVDTTARQIVALAQVNTP-----QIIYHVLSP--NKMPVK 414 (508)
T ss_dssp CC--CCTTCTTCHHHHHHHHHTTCSEE-ETTGGGSEEECEEHHHHHHHHHHHTTBCCS-----CSEEEESCS--CEEEHH
T ss_pred Cc--ccCCcchHHHHHHHHHHHHcCCC-CCCccCceEEEEcHHHHHHHHHHHHhCCCC-----CCEEEeCCC--CCCCHH
Confidence 31 1111111 22344445444322 223468899999999999999999987653 689999999 899999
Q ss_pred HHHHHHHHhhccCCCCccccccCCccccccCCCchhhHHHHHHhhhhhhhcccccCceeeecHHHHHHHhhcchhhhhcc
Q psy7542 370 DIIENGKDIARNKVPLNNVLWYPGGAMTNRGYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMMNEKEAIRY 449 (762)
Q Consensus 370 el~~~i~~~~G~~~P~~~~~w~p~~~~~~lG~kP~l~~l~~ki~~~~~~l~~f~~~~w~Fd~~n~~~L~~~ls~~Dr~~F 449 (762)
|+++.+.+.. -.+++...|...... .|..|.+ .+ + ..-.....+.|++.++.+.+..+
T Consensus 415 el~~~i~~~~--~~~~~~~~w~~~l~~--~~~~~~~-~~---~------~~~~~~~~~~~d~~~~~~~l~~~-------- 472 (508)
T 4f6l_B 415 SLLECVKRKE--IELVSDESFNEILQK--QDMYETI-GL---T------SVDREQQLAMIDTTLTLKIMNHI-------- 472 (508)
T ss_dssp HHHHHHHSSC--CEEECHHHHHHHHHT--TCCHHHH-HH---H------HTGGGSEECEECCHHHHHHHHHH--------
T ss_pred HHHHHHHHcC--CcccCHHHHHHHHHh--cCCccch-hc---c------cccccCcceecchHHHHHHHHHc--------
Confidence 9999999764 112222233322110 1111211 11 0 01112346789999999888655
Q ss_pred cccccCCCchHHHHHHHHHHHHhhc
Q psy7542 450 EIAMFRDLDEAKAYFEMCIHGARQY 474 (762)
Q Consensus 450 ~fD~~~~id~W~~Y~~~~~~Girky 474 (762)
.|.. ..++ +++++.++.-++.+
T Consensus 473 G~~~-~~~~--~~~l~~~~~~~~~~ 494 (508)
T 4f6l_B 473 SEKW-PTIT--NNWLYHWAQYIKTI 494 (508)
T ss_dssp SCCC-CCCC--HHHHHHHHHHHHHH
T ss_pred CCCC-CCCC--HHHHHHHHHHHHHH
Confidence 3444 5555 67777777666665
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.98 E-value=9.3e-31 Score=281.35 Aligned_cols=291 Identities=19% Similarity=0.262 Sum_probs=211.6
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++. +.+|+++.|...... .....+++++.+|++++
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~-----------------------~~~~~~~~~~~~D~~~~ 56 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDE--GLSVVVVDNLQTGHE-----------------------DAITEGAKFYNGDLRDK 56 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCSSCCG-----------------------GGSCTTSEEEECCTTCH
T ss_pred CEEEEECCCcHHHHHHHHHHHhC--CCEEEEEeCCCcCch-----------------------hhcCCCcEEEECCCCCH
Confidence 68999999999999999999998 678899998754321 01123788999999986
Q ss_pred CCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--cc
Q psy7542 142 DLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--KV 214 (762)
Q Consensus 142 ~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~~ 214 (762)
+ ++.++++ ++|+|||+||..... +.....+++|+.|+.+++++|++. ++++|||+||..+++.. .+
T Consensus 57 ~------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~Ss~~~~~~~~~~~ 129 (330)
T 2c20_A 57 A------FLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEF-KVDKFIFSSTAATYGEVDVDL 129 (330)
T ss_dssp H------HHHHHHHHSCEEEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCGGGGCSCSSSS
T ss_pred H------HHHHHHhhcCCCEEEECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHc-CCCEEEEeCCceeeCCCCCCC
Confidence 5 6778777 899999999987543 355678999999999999999987 78999999998665532 35
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPL 293 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~ 293 (762)
++|+....|. +.|+.||+.+|++++.++.. +++++++||+.|||+.....
T Consensus 130 ~~E~~~~~~~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~ 180 (330)
T 2c20_A 130 ITEETMTNPT-----------------------------NTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGATPNGI 180 (330)
T ss_dssp BCTTSCCCCS-----------------------------SHHHHHHHHHHHHHHHHHHTSSCEEEEEECSEEECCCTTCS
T ss_pred CCcCCCCCCC-----------------------------ChHHHHHHHHHHHHHHHHHHhCCcEEEEecCcccCCCCcCc
Confidence 6666443332 78999999999999998876 99999999999999975433
Q ss_pred CCCCCC-CCCchHHHHHHhc--CCeEEEee------CCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCC
Q psy7542 294 PGWTDN-INGPTGLLIGAGK--GIIRTMYC------DYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDF 364 (762)
Q Consensus 294 pGWidn-~~gp~~li~~~~~--G~l~~i~g------d~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~ 364 (762)
.|..+. .......+..... +....+++ +++..+++|+|+|+|++++.++...... ..+++||++++ .
T Consensus 181 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~~~~~~~~--~~~~~~ni~~~--~ 256 (330)
T 2c20_A 181 IGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLVAAHFLGLKDLQNG--GESDFYNLGNG--N 256 (330)
T ss_dssp SCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHHHHHHHHHHHHHHHTT--CCCEEEECCCT--T
T ss_pred cccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHHHHHHHHHHHhccccC--CCCCeEEeCCC--C
Confidence 222111 1111222333233 33344555 6788899999999999999998765331 12589999998 8
Q ss_pred cccHHHHHHHHHHhhccCCCCccccccCC--------c-cccc-cCCCchhhHHHHHHhhhhh
Q psy7542 365 QITWYDIIENGKDIARNKVPLNNVLWYPG--------G-AMTN-RGYEPVLKRVHNRIKKGFD 417 (762)
Q Consensus 365 piT~~el~~~i~~~~G~~~P~~~~~w~p~--------~-~~~~-lG~kP~l~~l~~ki~~~~~ 417 (762)
++|+.|+++.+.+..|.+.|.......+. . .... +||+|....+.+.+.+..+
T Consensus 257 ~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~~~l~~~~~ 319 (330)
T 2c20_A 257 GFSVKEIVDAVREVTNHEIPAEVAPRRAGDPARLVASSQKAKEKLGWDPRYVNVKTIIEHAWN 319 (330)
T ss_dssp CBCHHHHHHHHHHHTTSCCCEEEECCCSSCCSEECBCCHHHHHHHCCCCSCCCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCCCceeeCCCCCCcccccccCHHHHHHHhCCCCccCCHHHHHHHHHH
Confidence 89999999999999976655432111110 0 0111 7888876456666666444
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-30 Score=287.99 Aligned_cols=308 Identities=16% Similarity=0.184 Sum_probs=213.9
Q ss_pred CCEEEEECCCChhHHHHHHHHH-HcCCCcEEEEEeCCCCCc------chHHHHHHHhcChhHHHHHhhhhccc-ccCC--
Q psy7542 61 HKNIFITGASGFVGKVLLEKIL-RTCENVKIYILLRPKKNK------NSRERLEEIFQSPLYEALKKEQSESA-IFEK-- 130 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL-~~gp~v~V~~LvR~~~~~------~~~eRl~~ll~~~~f~~l~~~~~~~~-~~~k-- 130 (762)
+|+|||||||||||++|+++|+ +. +.+|+++.|..... ...+.+.+.++ .+ . .. ...+
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~---~--~~~~~~~~~ 69 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDT--NHSVVIVDSLVGTHGKSDHVETRENVARKLQ-----QS---D--GPKPPWADR 69 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHC--CCEEEEEECCTTTTTCCTTSCCHHHHHHHHH-----HS---C--SSCCTTTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhC--CCEEEEEecCCcccccccccchHHHHHHHHH-----Hh---h--ccccccCCc
Confidence 5799999999999999999999 87 67899999975432 00223322111 00 0 00 0124
Q ss_pred -eEEEEeecCCCCCCCCHHHHHhhcC--C-ccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 131 -VIPINGDVAVPDLGISAEDRQMLSE--T-IHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 131 -V~~V~GDl~~~~LGLs~~~l~~l~~--~-vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
++++.+|+++++ ++..+++ + +|+|||+||..... +.+...+++|+.||.+++++|++. ++++|||+
T Consensus 70 ~~~~~~~Dl~d~~------~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~~~iv~~ 142 (397)
T 1gy8_A 70 YAALEVGDVRNED------FLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH-KCDKIIFS 142 (397)
T ss_dssp CCEEEESCTTCHH------HHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEE
T ss_pred eEEEEECCCCCHH------HHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHh-CCCEEEEE
Confidence 899999999865 6777766 5 99999999987642 456678999999999999999987 78999999
Q ss_pred eCCcccCCC---------cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-
Q psy7542 204 STAYCHPKE---------KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA- 273 (762)
Q Consensus 204 SSay~~~~~---------~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~- 273 (762)
||+.+++.. .+++|+....|. +.|+.||+.+|++++.++..
T Consensus 143 SS~~v~g~~~~~~~~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~e~~~~~~~~~~ 193 (397)
T 1gy8_A 143 SSAAIFGNPTMGSVSTNAEPIDINAKKSPE-----------------------------SPYGESKLIAERMIRDCAEAY 193 (397)
T ss_dssp EEGGGTBSCCC-----CCCCBCTTSCCBCS-----------------------------SHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHhCCCCcccccccccCcCccCCCCCC-----------------------------CchHHHHHHHHHHHHHHHHHH
Confidence 998665432 245554332222 78999999999999998876
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCC-CCCchHHHH-----HHhcCC------------eEEEee------CCCcccccc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDN-INGPTGLLI-----GAGKGI------------IRTMYC------DYSTCADFL 329 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn-~~gp~~li~-----~~~~G~------------l~~i~g------d~~~~~d~V 329 (762)
+++++++||+.|||+...+..|+.+. .......+. .+..|. ...+++ +++..+++|
T Consensus 194 gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v 273 (397)
T 1gy8_A 194 GIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYV 273 (397)
T ss_dssp CCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-----------CCCEEEECSCSSSTTSSCEECEE
T ss_pred CCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHHHHhcCccccccccccCCCceeecCcccCCCCCeeEeeE
Confidence 99999999999999976544343221 111222222 444443 234555 678899999
Q ss_pred cHHHHHHHHHHHhhcccCCC-CCCc---eEEEecCCCCCcccHHHHHHHHHHhhccCCCCccccccCC----cc-----c
Q psy7542 330 PVDVLVNGVLLSTWNFLSNP-GNTM---RVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPG----GA-----M 396 (762)
Q Consensus 330 pVDdvA~aii~a~~~~~~~~-~~~~---~iyNi~s~~~~piT~~el~~~i~~~~G~~~P~~~~~w~p~----~~-----~ 396 (762)
||+|+|++++.++....... ...+ ++||++++ +++|+.|+++.+.+.+|.+.|+......+. .. .
T Consensus 274 ~v~Dva~a~~~~l~~~~~~~~~~~~~~~~~~ni~~~--~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~ 351 (397)
T 1gy8_A 274 HVCDLASAHILALDYVEKLGPNDKSKYFSVFNLGTS--RGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKA 351 (397)
T ss_dssp EHHHHHHHHHHHHHHHHTCCTTTGGGSEEEEEESCS--CCEEHHHHHHHHHHHHCCCCCEEEECCCTTCCSEECBCCHHH
T ss_pred eHHHHHHHHHHHHhcccccccccccCCCcEEEeCCC--CcccHHHHHHHHHHHhCCCCCeeeCCCCCCcccccccCHHHH
Confidence 99999999999987653210 0013 89999998 889999999999999976655322111110 00 1
Q ss_pred cc-cCCCchhhHHHHHHhhhhhh
Q psy7542 397 TN-RGYEPVLKRVHNRIKKGFDI 418 (762)
Q Consensus 397 ~~-lG~kP~l~~l~~ki~~~~~~ 418 (762)
.. +||+|....+.+.+.+..++
T Consensus 352 ~~~lG~~p~~~~l~e~l~~~~~~ 374 (397)
T 1gy8_A 352 REVLGWKPKYDTLEAIMETSWKF 374 (397)
T ss_dssp HHHTCCCCSCCSHHHHHHHHHHH
T ss_pred HHHhCCCCCcCCHHHHHHHHHHH
Confidence 11 89999765677777665543
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.9e-31 Score=290.20 Aligned_cols=295 Identities=16% Similarity=0.176 Sum_probs=212.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCC-cEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCEN-VKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~-v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++|+|||||||||||++|+++|++. + .+|++++|...... +++ . ...+++++.+|
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~--~~l------------------~-~~~~v~~~~~D 86 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLEL--GVNQVHVVDNLLSAEK--INV------------------P-DHPAVRFSETS 86 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHT--TCSEEEEECCCTTCCG--GGS------------------C-CCTTEEEECSC
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHc--CCceEEEEECCCCCch--hhc------------------c-CCCceEEEECC
Confidence 57899999999999999999999998 6 78999999754321 000 0 13578999999
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc-
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK- 213 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~- 213 (762)
+++++ ++.++++++|+|||+||..... .+....+++|+.|+.+++++|++.+++++|||+||..+++...
T Consensus 87 l~d~~------~l~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~ 160 (377)
T 2q1s_A 87 ITDDA------LLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTF 160 (377)
T ss_dssp TTCHH------HHHHCCSCCSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------
T ss_pred CCCHH------HHHHHhhCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCC
Confidence 99865 7888999999999999987643 3556789999999999999998864678999999986655432
Q ss_pred -ccc--cccCCCCC-ChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccC
Q psy7542 214 -VLE--EKTYPPPV-SPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPI 288 (762)
Q Consensus 214 -~i~--E~~~~~p~-~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~ 288 (762)
+++ |+....|. .+ .+.|+.+|+.+|+++..++.. |++++++||+.|||+
T Consensus 161 ~~~~~~E~~~~~~~~~~--------------------------~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~ 214 (377)
T 2q1s_A 161 DDAKATEETDIVSLHNN--------------------------DSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGP 214 (377)
T ss_dssp ------CCCCCCCSSCC--------------------------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECT
T ss_pred CCcCcccccccccccCC--------------------------CCchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECC
Confidence 445 54311011 11 168999999999999998765 999999999999999
Q ss_pred CCCCCCC-CCCCC----CC-chHHHHHHhcCCeEEEeeCCCcccccccHHHHHHH-HHHHhhcccCCCCCCceEEEecCC
Q psy7542 289 WKDPLPG-WTDNI----NG-PTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNG-VLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 289 ~~eP~pG-Widn~----~g-p~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~a-ii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
...+.+| |.... .. ...++..+..|....++++++..+++|+|+|+|++ ++.++.... .+ +||++++
T Consensus 215 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~i~~~~~~~~-----~g-~~~i~~~ 288 (377)
T 2q1s_A 215 GEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVEDVANGLIACAADGTP-----GG-VYNIASG 288 (377)
T ss_dssp TCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGGGCCEECCEEHHHHHHHHHHHHHHCCT-----TE-EEECCCC
T ss_pred CCcccccccccCcccccccHHHHHHHHHHcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHHhcCC-----CC-eEEecCC
Confidence 7643333 32221 11 23455566677665567888899999999999999 998888643 25 9999998
Q ss_pred CCCcccHHHHHHHHHHhhccCCCCccccccC-----Ccccc------ccCCCchhhHHHHHHhhhhh
Q psy7542 362 KDFQITWYDIIENGKDIARNKVPLNNVLWYP-----GGAMT------NRGYEPVLKRVHNRIKKGFD 417 (762)
Q Consensus 362 ~~~piT~~el~~~i~~~~G~~~P~~~~~w~p-----~~~~~------~lG~kP~l~~l~~ki~~~~~ 417 (762)
+++|+.|+++.+.+.+|.+.++......+ ..... .+||+|.. .+.+.+.+..+
T Consensus 289 --~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~d~~k~~~~lG~~p~~-~l~e~l~~~~~ 352 (377)
T 2q1s_A 289 --KETSIADLATKINEITGNNTELDRLPKRPWDNSGKRFGSPEKARRELGFSADV-SIDDGLRKTIE 352 (377)
T ss_dssp --CCEEHHHHHHHHHHHHTCCSCCCCCCCCGGGCC-CCCCCCHHHHHHHCCCCCC-CHHHHHHHHHH
T ss_pred --CceeHHHHHHHHHHHhCCCCCceeCCCCccccccccccCHHHHHHHcCCCCCC-CHHHHHHHHHH
Confidence 89999999999999997654432211111 11111 17888876 46677666444
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.98 E-value=4.7e-31 Score=282.10 Aligned_cols=279 Identities=17% Similarity=0.209 Sum_probs=208.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++. + .++++.|...... .....++.++.+|+++
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~--g-~~v~~~~~~~~~~-----------------------~~~~~~~~~~~~Dl~~- 54 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSES--N-EIVVIDNLSSGNE-----------------------EFVNEAARLVKADLAA- 54 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTT--S-CEEEECCCSSCCG-----------------------GGSCTTEEEECCCTTT-
T ss_pred CEEEEECCCchHHHHHHHHHHhC--C-CEEEEEcCCCCCh-----------------------hhcCCCcEEEECcCCh-
Confidence 57999999999999999999998 4 4555665443211 1123578999999998
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC--Ccccc
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK--EKVLE 216 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~--~~~i~ 216 (762)
+ ++.++++++|+|||+|+.... .+.+...+++|+.||.+++++|++. ++++|||+||..+++. ..+++
T Consensus 55 ~------~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~-~~~~iv~~SS~~vyg~~~~~~~~ 127 (313)
T 3ehe_A 55 D------DIKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKA-GVSRIVFTSTSTVYGEAKVIPTP 127 (313)
T ss_dssp S------CCHHHHTTCSEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGGCSCSSSSBC
T ss_pred H------HHHHHhcCCCEEEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEeCchHHhCcCCCCCCC
Confidence 4 467778899999999996542 3567789999999999999999987 7889999999865543 34666
Q ss_pred cccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCCCC
Q psy7542 217 EKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPG 295 (762)
Q Consensus 217 E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~pG 295 (762)
|+....|. +.|+.||+.+|.+++.++.. |++++++||+.|||+...+ +
T Consensus 128 E~~~~~~~-----------------------------~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~--~ 176 (313)
T 3ehe_A 128 EDYPTHPI-----------------------------SLYGASKLACEALIESYCHTFDMQAWIYRFANVIGRRSTH--G 176 (313)
T ss_dssp TTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHTTCEEEEEECSCEESTTCCC--S
T ss_pred CCCCCCCC-----------------------------CHHHHHHHHHHHHHHHHHHhcCCCEEEEeeccccCcCCCc--C
Confidence 66444333 68999999999999998876 9999999999999986542 1
Q ss_pred CCCCCCCchHHHHHHhcC-CeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHH
Q psy7542 296 WTDNINGPTGLLIGAGKG-IIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIEN 374 (762)
Q Consensus 296 Widn~~gp~~li~~~~~G-~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~ 374 (762)
....++..+..+ ....+.++++..+++++|+|+|++++.++.... .+++||++++ +++|+.|+++.
T Consensus 177 ------~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~-----~~~~~ni~~~--~~~s~~e~~~~ 243 (313)
T 3ehe_A 177 ------VIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDE-----RVNIFNIGSE--DQIKVKRIAEI 243 (313)
T ss_dssp ------HHHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTTCCS-----SEEEEECCCS--CCEEHHHHHHH
T ss_pred ------hHHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhccCC-----CCceEEECCC--CCeeHHHHHHH
Confidence 123345555555 445578899999999999999999999988332 4789999998 89999999999
Q ss_pred HHHhhccCCCCcccc----ccCC--------ccccccCCCchhhHHHHHHhhhhhhh
Q psy7542 375 GKDIARNKVPLNNVL----WYPG--------GAMTNRGYEPVLKRVHNRIKKGFDIF 419 (762)
Q Consensus 375 i~~~~G~~~P~~~~~----w~p~--------~~~~~lG~kP~l~~l~~ki~~~~~~l 419 (762)
+.+.+|.+.++.... |... .....+||+|+. .+.+.+.+..+++
T Consensus 244 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~-~~~e~l~~~~~~~ 299 (313)
T 3ehe_A 244 VCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLKRLGWKPRY-NSEEAVRMAVRDL 299 (313)
T ss_dssp HHHHTTCCCEEEEC------------CCBCCHHHHHHTCCCSC-CHHHHHHHHHHHH
T ss_pred HHHHhCCCCceEECCCccCCccccceeccCHHHHHHcCCCCCC-CHHHHHHHHHHHH
Confidence 999997654322111 1110 001117888876 6777776654443
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=8.1e-31 Score=283.91 Aligned_cols=288 Identities=18% Similarity=0.202 Sum_probs=213.7
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++.+++++|++++|....... +++. .....+++++.+|++++
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~-~~~~-----------------~~~~~~~~~~~~Dl~d~ 66 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNK-ANLE-----------------AILGDRVELVVGDIADA 66 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCG-GGTG-----------------GGCSSSEEEEECCTTCH
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCh-hHHh-----------------hhccCCeEEEECCCCCH
Confidence 68999999999999999999998667799999997532111 1110 01125789999999986
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC------
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE------ 212 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~------ 212 (762)
+ ++.++++++|+|||+||..... .+....+++|+.||.+++++|.+. ++ +|||+||..+++..
T Consensus 67 ~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~-~~v~~SS~~vyg~~~~~~~~ 138 (348)
T 1oc2_A 67 E------LVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY-DI-RFHHVSTDEVYGDLPLREDL 138 (348)
T ss_dssp H------HHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEGGGGCCBCCGGGS
T ss_pred H------HHHHHhhcCCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHh-CC-eEEEecccceeCCCcccccc
Confidence 5 7889999999999999987542 344678999999999999999987 56 99999998665432
Q ss_pred --------cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeee
Q psy7542 213 --------KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPS 283 (762)
Q Consensus 213 --------~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs 283 (762)
.+++|+....| .+.|+.||+.+|++++.++.. |++++++||+
T Consensus 139 ~~~~~~~~~~~~E~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~ 189 (348)
T 1oc2_A 139 PGHGEGPGEKFTAETNYNP-----------------------------SSPYSSTKAASDLIVKAWVRSFGVKATISNCS 189 (348)
T ss_dssp TTTTCSTTSSBCTTSCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred cccccccCCCcCCCCCCCC-----------------------------CCccHHHHHHHHHHHHHHHHHhCCCEEEEeec
Confidence 33444432222 278999999999999998766 9999999999
Q ss_pred eeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCC
Q psy7542 284 IIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKD 363 (762)
Q Consensus 284 ~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~ 363 (762)
.|||+...+. .....++..+..|....++++++...++++++|+|++++.++.... .+++||++++
T Consensus 190 ~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~-----~g~~~~i~~~-- 255 (348)
T 1oc2_A 190 NNYGPYQHIE-------KFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGR-----MGETYLIGAD-- 255 (348)
T ss_dssp CEESTTCCTT-------SHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHCC-----TTCEEEECCS--
T ss_pred eeeCCCCCcc-------chHHHHHHHHHcCCCceEecCCCceEeeEEHHHHHHHHHHHhhCCC-----CCCeEEeCCC--
Confidence 9999865320 1122345556677666677888899999999999999999987643 3689999998
Q ss_pred CcccHHHHHHHHHHhhccCCC-CccccccCC------cc---ccc-cCCCchhhHHHHHHhhhhhh
Q psy7542 364 FQITWYDIIENGKDIARNKVP-LNNVLWYPG------GA---MTN-RGYEPVLKRVHNRIKKGFDI 418 (762)
Q Consensus 364 ~piT~~el~~~i~~~~G~~~P-~~~~~w~p~------~~---~~~-lG~kP~l~~l~~ki~~~~~~ 418 (762)
.++|+.|+++.+.+.+|.+.+ +......+. .. ... +||+|+...+.+.+.+..++
T Consensus 256 ~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~~~~~~ 321 (348)
T 1oc2_A 256 GEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQW 321 (348)
T ss_dssp CEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHHCCCCSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCccccccCCCCCCcccccccCHHHHHHHcCCCCCCCcHHHHHHHHHHH
Confidence 889999999999999976543 111100110 00 111 79998873377777665443
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.5e-31 Score=280.17 Aligned_cols=248 Identities=18% Similarity=0.118 Sum_probs=194.9
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+.+.++|||||||||||++|+++|++. +.+|++++|.... . . . ++.++.+|
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~--G~~V~~~~r~~~~-~-----------------------~--l-~~~~~~~D 59 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQ--NVEVFGTSRNNEA-K-----------------------L--P-NVEMISLD 59 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCTTC-C-----------------------C--T-TEEEEECC
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHC--CCEEEEEecCCcc-c-----------------------c--c-eeeEEECC
Confidence 346689999999999999999999998 6789999997543 1 1 1 57889999
Q ss_pred cCCCCCCCCHHHHHhhcCC--ccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC-
Q psy7542 138 VAVPDLGISAEDRQMLSET--IHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK- 211 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~--vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~- 211 (762)
+++++ ++.+++++ +|+|||+||.... .+.+...+++|+.||.+++++|++++++++|||+||..+++.
T Consensus 60 l~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~ 133 (321)
T 2pk3_A 60 IMDSQ------RVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMI 133 (321)
T ss_dssp TTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSC
T ss_pred CCCHH------HHHHHHHhcCCCEEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCC
Confidence 99765 67777765 8999999998763 235678999999999999999987645799999999866553
Q ss_pred ---CcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeecc
Q psy7542 212 ---EKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIP 287 (762)
Q Consensus 212 ---~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G 287 (762)
..+++|+....|. +.|+.||+.+|.+++.++.. |++++++||+.|||
T Consensus 134 ~~~~~~~~E~~~~~~~-----------------------------~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g 184 (321)
T 2pk3_A 134 LPEESPVSEENQLRPM-----------------------------SPYGVSKASVGMLARQYVKAYGMDIIHTRTFNHIG 184 (321)
T ss_dssp CGGGCSBCTTSCCBCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEEC
T ss_pred CCCCCCCCCCCCCCCC-----------------------------CccHHHHHHHHHHHHHHHHHcCCCEEEEEeCcccC
Confidence 3356665443332 78999999999999998766 99999999999999
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHhc---C--CeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCC
Q psy7542 288 IWKDPLPGWTDNINGPTGLLIGAGK---G--IIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANK 362 (762)
Q Consensus 288 ~~~eP~pGWidn~~gp~~li~~~~~---G--~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~ 362 (762)
+...+. .....++..+.. | ......++++...++++++|+|++++.++.... .+++||++++
T Consensus 185 ~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~-----~g~~~~i~~~- 251 (321)
T 2pk3_A 185 PGQSLG-------FVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQYGK-----TGDVYNVCSG- 251 (321)
T ss_dssp TTCCTT-------SHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHHHHHHHHHHCC-----TTCEEEESCS-
T ss_pred cCCCCC-------chHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHHHHHHHHhCCC-----CCCeEEeCCC-
Confidence 865420 011234444444 6 345567788889999999999999999998763 3689999998
Q ss_pred CCcccHHHHHHHHHHhhccCC
Q psy7542 363 DFQITWYDIIENGKDIARNKV 383 (762)
Q Consensus 363 ~~piT~~el~~~i~~~~G~~~ 383 (762)
.++|+.|+++.+.+.+|.+.
T Consensus 252 -~~~s~~e~~~~i~~~~g~~~ 271 (321)
T 2pk3_A 252 -IGTRIQDVLDLLLAMANVKI 271 (321)
T ss_dssp -CEEEHHHHHHHHHHHSSSCC
T ss_pred -CCeeHHHHHHHHHHHhCCCC
Confidence 88999999999999997654
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=280.70 Aligned_cols=301 Identities=16% Similarity=0.171 Sum_probs=210.9
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCC----cchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKN----KNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~----~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
+|+|||||||||||++|+++|++. +.+|++++|.... ....+.++++.. ....+++++.+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~r~~~~~~~~~~~l~~--------------~~~~~~~~~~~ 65 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEA--GYLPVVIDNFHNAFRGGGSLPESLRRVQE--------------LTGRSVEFEEM 65 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHT--TCCEEEEECSSSSCBCSSSSBHHHHHHHH--------------HHTCCCEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEecCCcccccccccHHHHHHHHh--------------ccCCceEEEEC
Confidence 478999999999999999999998 6778999886543 001122222110 01247889999
Q ss_pred ecCCCCCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC
Q psy7542 137 DVAVPDLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK 211 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~ 211 (762)
|+++++ ++.++++ ++|+|||+||..... +.....+++|+.|+.+++++|++. ++++|||+||..+++.
T Consensus 66 D~~~~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~~g~ 138 (348)
T 1ek6_A 66 DILDQG------ALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH-GVKNLVFSSSATVYGN 138 (348)
T ss_dssp CTTCHH------HHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGGCS
T ss_pred CCCCHH------HHHHHHHhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHh-CCCEEEEECcHHHhCC
Confidence 999865 6777777 899999999976532 345678999999999999999987 7889999999866543
Q ss_pred --CcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcC--CCEEEEeeeeecc
Q psy7542 212 --EKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAG--MPCMILRPSIIIP 287 (762)
Q Consensus 212 --~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~g--lpv~IvRPs~V~G 287 (762)
..+++|+....|. .+.|+.||+.+|++++.++..+ ++++++||+.|||
T Consensus 139 ~~~~~~~E~~~~~p~----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lR~~~v~G 190 (348)
T 1ek6_A 139 PQYLPLDEAHPTGGC----------------------------TNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTG 190 (348)
T ss_dssp CSSSSBCTTSCCCCC----------------------------SSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEEC
T ss_pred CCCCCcCCCCCCCCC----------------------------CCchHHHHHHHHHHHHHHHhcCCCcceEEEeeccccC
Confidence 3356665433331 2789999999999999987544 9999999999999
Q ss_pred CCCCCCCCCCCC--CCCchHHHHHHh--cCCeEEEee------CCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 288 IWKDPLPGWTDN--INGPTGLLIGAG--KGIIRTMYC------DYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 288 ~~~eP~pGWidn--~~gp~~li~~~~--~G~l~~i~g------d~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
+......|.... .......+.... .+....+++ +++..+++|+|+|+|++++.++...... ..+++||
T Consensus 191 ~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~--~g~~~~n 268 (348)
T 1ek6_A 191 AHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQ--CGCRIYN 268 (348)
T ss_dssp CCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTT--CCEEEEE
T ss_pred CCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCCCceEEeeEEHHHHHHHHHHHHhccccc--CCceEEE
Confidence 864322222111 011122223332 444445555 5678899999999999999998865311 0248999
Q ss_pred ecCCCCCcccHHHHHHHHHHhhccCCCCccccccCC--------cc-c-cccCCCchhhHHHHHHhhhhh
Q psy7542 358 LTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPG--------GA-M-TNRGYEPVLKRVHNRIKKGFD 417 (762)
Q Consensus 358 i~s~~~~piT~~el~~~i~~~~G~~~P~~~~~w~p~--------~~-~-~~lG~kP~l~~l~~ki~~~~~ 417 (762)
++++ +++|+.|+++.+.+.+|.+.|.......+. .. . ..+||+|+. .+.+.+.+..+
T Consensus 269 i~~~--~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-~l~~~l~~~~~ 335 (348)
T 1ek6_A 269 LGTG--TGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAAL-GLDRMCEDLWR 335 (348)
T ss_dssp ECCS--CCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHHHTTCCCCCC-CHHHHHHHHHH
T ss_pred eCCC--CCccHHHHHHHHHHHhCCCCceeeCCCCCccchhhccCHHHHHHhcCCCCCC-CHHHHHHHHHH
Confidence 9998 889999999999999976655322111110 00 1 118999876 47777766444
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=279.46 Aligned_cols=289 Identities=16% Similarity=0.174 Sum_probs=214.7
Q ss_pred CEEEEECCCChhHHHHHHHHHHc-CCC---cEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 62 KNIFITGASGFVGKVLLEKILRT-CEN---VKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~-gp~---v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
|+|||||||||||++|+++|++. +++ .+|++++|....... +++.++ ....+++++.+|
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~-~~~~~~----------------~~~~~~~~~~~D 63 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR-ANLAPV----------------DADPRLRFVHGD 63 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG-GGGGGG----------------TTCTTEEEEECC
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCch-hhhhhc----------------ccCCCeEEEEcC
Confidence 57999999999999999999995 556 799999996532111 111110 012578999999
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC--C
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK--E 212 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~--~ 212 (762)
+++++ ++.+++.++|+|||+||..... .+....+++|+.||.+++++|++. ++++|||+||..+++. .
T Consensus 64 l~d~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~-~~~~~v~~SS~~vyg~~~~ 136 (337)
T 1r6d_A 64 IRDAG------LLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA-GVGRVVHVSTNQVYGSIDS 136 (337)
T ss_dssp TTCHH------HHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT-TCCEEEEEEEGGGGCCCSS
T ss_pred CCCHH------HHHHHhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEecchHHhCCCCC
Confidence 99865 7888889999999999986542 345678999999999999999997 7889999999865543 2
Q ss_pred cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCC
Q psy7542 213 KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKD 291 (762)
Q Consensus 213 ~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~e 291 (762)
.+++|+....|. +.|+.||+.+|++++.++.. +++++++||+.|||+...
T Consensus 137 ~~~~E~~~~~~~-----------------------------~~Y~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~ 187 (337)
T 1r6d_A 137 GSWTESSPLEPN-----------------------------SPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQH 187 (337)
T ss_dssp SCBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCC
T ss_pred CCCCCCCCCCCC-----------------------------CchHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCC
Confidence 356665433332 78999999999999988765 999999999999998753
Q ss_pred CCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHH
Q psy7542 292 PLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDI 371 (762)
Q Consensus 292 P~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el 371 (762)
+. .....++..+..|....++++++...++++++|+|++++.++.... .+++||++++ .++|+.|+
T Consensus 188 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-----~g~~~~v~~~--~~~s~~e~ 253 (337)
T 1r6d_A 188 PE-------KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGR-----AGEIYHIGGG--LELTNREL 253 (337)
T ss_dssp TT-------SHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC-----TTCEEEECCC--CEEEHHHH
T ss_pred CC-------ChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHHHHHhCCC-----CCCEEEeCCC--CCccHHHH
Confidence 20 1122355556667666677888899999999999999999987643 3689999998 88999999
Q ss_pred HHHHHHhhccCCCC-ccccccCC------cc---ccc-cCCCchhhHHHHHHhhhhhh
Q psy7542 372 IENGKDIARNKVPL-NNVLWYPG------GA---MTN-RGYEPVLKRVHNRIKKGFDI 418 (762)
Q Consensus 372 ~~~i~~~~G~~~P~-~~~~w~p~------~~---~~~-lG~kP~l~~l~~ki~~~~~~ 418 (762)
++.+.+.+|.+.|. ......+. .. ... +||+|.. .+.+.+.+..++
T Consensus 254 ~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-~~~e~l~~~~~~ 310 (337)
T 1r6d_A 254 TGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQV-SFADGLARTVRW 310 (337)
T ss_dssp HHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCS-CHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcccceecCCCCCCcceeecCHHHHHHHcCCCCCC-CHHHHHHHHHHH
Confidence 99999999765431 11000010 00 111 7999976 477777665543
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=284.34 Aligned_cols=288 Identities=19% Similarity=0.209 Sum_probs=215.3
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+|||||||||||++|+++|++. +.+|++++|...... .....+++++.+|++
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~-----------------------~~~~~~v~~~~~Dl~ 82 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHE--GHYVIASDWKKNEHM-----------------------TEDMFCDEFHLVDLR 82 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCCSSS-----------------------CGGGTCSEEEECCTT
T ss_pred cCCeEEEECCccHHHHHHHHHHHHC--CCeEEEEECCCccch-----------------------hhccCCceEEECCCC
Confidence 5689999999999999999999998 678999999764321 011247889999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCc----cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc--
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRF----DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK-- 213 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f----~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~-- 213 (762)
+++ ++..+++++|+|||+||.... ..+....+++|+.|+.+++++|++. ++++|||+||..+++...
T Consensus 83 d~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~-~~~~~V~~SS~~v~~~~~~~ 155 (379)
T 2c5a_A 83 VME------NCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARIN-GIKRFFYASSACIYPEFKQL 155 (379)
T ss_dssp SHH------HHHHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEEEEGGGSCGGGSS
T ss_pred CHH------HHHHHhCCCCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEeehheeCCCCCC
Confidence 865 788888999999999997653 4567789999999999999999987 788999999987665321
Q ss_pred -----ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeecc
Q psy7542 214 -----VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIP 287 (762)
Q Consensus 214 -----~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G 287 (762)
+++|+... |. ...+.|+.||+.+|++++.++.. +++++++||+.|||
T Consensus 156 ~~~~~~~~E~~~~-~~--------------------------~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G 208 (379)
T 2c5a_A 156 ETTNVSLKESDAW-PA--------------------------EPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYG 208 (379)
T ss_dssp SSSSCEECGGGGS-SB--------------------------CCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEEC
T ss_pred CccCCCcCcccCC-CC--------------------------CCCChhHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeC
Confidence 24443210 11 11278999999999999988765 99999999999999
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHhcCCe-EEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcc
Q psy7542 288 IWKDPLPGWTDNINGPTGLLIGAGKGII-RTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQI 366 (762)
Q Consensus 288 ~~~eP~pGWidn~~gp~~li~~~~~G~l-~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~pi 366 (762)
+...+..++. .....++..+..|.. ..++++++..+++++++|+|++++.++... . +++||++++ +++
T Consensus 209 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~-~-----~~~~ni~~~--~~~ 277 (379)
T 2c5a_A 209 PFGTWKGGRE---KAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD-F-----REPVNIGSD--EMV 277 (379)
T ss_dssp TTSCCSSSCC---CHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSS-C-----CSCEEECCC--CCE
T ss_pred cCCCcccccc---cHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHHHHHHHhhcc-C-----CCeEEeCCC--Ccc
Confidence 8765322210 112345555656654 556788889999999999999999998765 2 479999998 899
Q ss_pred cHHHHHHHHHHhhccCCCCcccc-cc--CCccc-----cc-cCCCchhhHHHHHHhhhhhh
Q psy7542 367 TWYDIIENGKDIARNKVPLNNVL-WY--PGGAM-----TN-RGYEPVLKRVHNRIKKGFDI 418 (762)
Q Consensus 367 T~~el~~~i~~~~G~~~P~~~~~-w~--p~~~~-----~~-lG~kP~l~~l~~ki~~~~~~ 418 (762)
|+.|+++.+.+.+|.+.++.... +. ..... .. +||+|+. .+.+.+.+..++
T Consensus 278 s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~d~~k~~~~lG~~p~~-~l~e~l~~~~~~ 337 (379)
T 2c5a_A 278 SMNEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNM-RLKEGLRITYFW 337 (379)
T ss_dssp EHHHHHHHHHHTTTCCCCEEEECCCCCCSBCEECCHHHHHHHSCCCCC-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCceeeCCCCCCcccccCCHHHHHHHhCCCCCC-CHHHHHHHHHHH
Confidence 99999999999997654432111 11 00001 01 8999986 577777664443
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-31 Score=288.97 Aligned_cols=308 Identities=14% Similarity=0.041 Sum_probs=212.4
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcc--------------hHHHHHHHhcChhHHHHHhhhh
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKN--------------SRERLEEIFQSPLYEALKKEQS 123 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~--------------~~eRl~~ll~~~~f~~l~~~~~ 123 (762)
+.++++|||||||||||++|+++|++. +.+|+++.|...... ..+++.++.
T Consensus 8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------- 72 (404)
T 1i24_A 8 HHHGSRVMVIGGDGYCGWATALHLSKK--NYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK------------- 72 (404)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHH-------------
T ss_pred ccCCCeEEEeCCCcHHHHHHHHHHHhC--CCeEEEEEecCccccccccccccccccchhhhhhhhHh-------------
Confidence 457899999999999999999999998 678899988532110 011121110
Q ss_pred cccccCCeEEEEeecCCCCCCCCHHHHHhhcCC--ccEEEEcccccCcc---ccH---HHHHHHhHHHHHHHHHHHHHcC
Q psy7542 124 ESAIFEKVIPINGDVAVPDLGISAEDRQMLSET--IHIVYHIAATVRFD---DYM---QTYVFLNTRGTRDMLNLSKQMI 195 (762)
Q Consensus 124 ~~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~--vDiViH~AA~v~f~---~~l---~~~~~~NV~GT~~LLelA~~~~ 195 (762)
.....+++++.+|+++++ ++.+++++ +|+|||+||..... .+. ...+++|+.||.+++++|++.
T Consensus 73 -~~~~~~v~~~~~Dl~d~~------~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~- 144 (404)
T 1i24_A 73 -ALTGKSIELYVGDICDFE------FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEF- 144 (404)
T ss_dssp -HHHCCCCEEEESCTTSHH------HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred -hccCCceEEEECCCCCHH------HHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHh-
Confidence 011357899999999765 67777776 99999999976532 122 247899999999999999987
Q ss_pred Cc-cEEEEEeCCcccCCC-cccccccCC-----------CCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHH
Q psy7542 196 HL-QLFVYVSTAYCHPKE-KVLEEKTYP-----------PPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCL 262 (762)
Q Consensus 196 ~l-k~fV~vSSay~~~~~-~~i~E~~~~-----------~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~ 262 (762)
+. ++|||+||+.+++.. .+++|+.++ .|.. ..+.|+.||+.
T Consensus 145 ~~~~~~V~~SS~~vyg~~~~~~~E~~~~~~~~~~~~~~~~~~~--------------------------~~~~Y~~sK~~ 198 (404)
T 1i24_A 145 GEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQ--------------------------ASSFYHLSKVH 198 (404)
T ss_dssp CTTCEEEEECCGGGGCCCSSCBCSSEEEEEETTEEEEEECCCC--------------------------CCSHHHHHHHH
T ss_pred CCCcEEEEeCcHHHhCCCCCCCCccccccccccccccccCCCC--------------------------CCChhHHHHHH
Confidence 55 599999998665533 234443110 1111 12789999999
Q ss_pred HHHHHHHHHHc-CCCEEEEeeeeeccCCCCC---CCCCCCCC-------CCchHHHHHHhcCCeEEEeeCCCcccccccH
Q psy7542 263 CEGVVTEYMEA-GMPCMILRPSIIIPIWKDP---LPGWTDNI-------NGPTGLLIGAGKGIIRTMYCDYSTCADFLPV 331 (762)
Q Consensus 263 aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP---~pGWidn~-------~gp~~li~~~~~G~l~~i~gd~~~~~d~VpV 331 (762)
+|+++..++.. |++++++||+.|||+...+ .++|++.. .....++..+..|....++++++..+++|+|
T Consensus 199 ~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v 278 (404)
T 1i24_A 199 DSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDI 278 (404)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEH
T ss_pred HHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccchhhHHHHHHHHHHcCCeeEEeCCCCceECcEEH
Confidence 99999988765 9999999999999997643 12222211 1123456666778777778899999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCCc--eEEEecCCCCCcccHHHHHHHHHHh---hccCCCCcc-ccccC-----Cc-----c
Q psy7542 332 DVLVNGVLLSTWNFLSNPGNTM--RVINLTANKDFQITWYDIIENGKDI---ARNKVPLNN-VLWYP-----GG-----A 395 (762)
Q Consensus 332 DdvA~aii~a~~~~~~~~~~~~--~iyNi~s~~~~piT~~el~~~i~~~---~G~~~P~~~-~~w~p-----~~-----~ 395 (762)
+|+|++++.++..... .+ ++||+++ .++|+.|+++.+.+. .|.+.+... +.+.. .. .
T Consensus 279 ~Dva~a~~~~l~~~~~----~g~~~~yni~~---~~~s~~e~~~~i~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k 351 (404)
T 1i24_A 279 RDTVQCVEIAIANPAK----AGEFRVFNQFT---EQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTK 351 (404)
T ss_dssp HHHHHHHHHHHHSCCC----TTCEEEEEECS---EEEEHHHHHHHHHHHHHTTTCCCCEEEECCSSCSCSSCCCCBCCCH
T ss_pred HHHHHHHHHHHhCccc----CCCceEEEECC---CCCcHHHHHHHHHHHHHhhCCCccccccCcccCccccceEecCHHH
Confidence 9999999999987543 24 7999986 479999999999997 555443211 11111 00 0
Q ss_pred ccccCCCchhhHHHHHHhhhhhhhccc
Q psy7542 396 MTNRGYEPVLKRVHNRIKKGFDIFEYY 422 (762)
Q Consensus 396 ~~~lG~kP~l~~l~~ki~~~~~~l~~f 422 (762)
...+||+|+. .+.+.+....++++++
T Consensus 352 ~~~LG~~p~~-~~~~~l~~~~~~~~~~ 377 (404)
T 1i24_A 352 LMELGLEPHY-LSDSLLDSLLNFAVQF 377 (404)
T ss_dssp HHHTTCCCCC-CCHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCc-CHHHHHHHHHHHHHhh
Confidence 1128999976 5666666655555544
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-31 Score=293.18 Aligned_cols=337 Identities=15% Similarity=0.133 Sum_probs=224.8
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+|+|||||||||||++|+++|++. +.+|++++|......+.+++.+.+....-+.+. .....++.++.||++
T Consensus 68 ~~~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~-----~~~~~~v~~v~~Dl~ 140 (427)
T 4f6c_A 68 PLGNTLLTGATGFLGAYLIEALQGY--SHRIYCFIRADNEEIAWYKLMTNLNDYFSEETV-----EMMLSNIEVIVGDFE 140 (427)
T ss_dssp CCEEEEEECTTSHHHHHHHHHHTTT--EEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHH-----HHHHTTEEEEEECC-
T ss_pred CCCEEEEecCCcHHHHHHHHHHHcC--CCEEEEEECCCChHHHHHHHHHHHHHhcccccc-----ccccCceEEEeCCCC
Confidence 5789999999999999999999766 679999999887655666776554321100001 112468999999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC-------C
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK-------E 212 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~-------~ 212 (762)
+++ .+. ...++|+|||+||......++...+++|+.||.+++++|++ +.++|||+||.++ +. .
T Consensus 141 d~~------~l~-~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~--~~~~~v~~SS~~~-G~~~~~~~~~ 210 (427)
T 4f6c_A 141 CMD------DVV-LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVSTISV-GTYFDIDTED 210 (427)
T ss_dssp --C------CCC-CSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHH--TTCEEEEEEEGGG-GSEECSSCSC
T ss_pred Ccc------cCC-CcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHh--cCCcEEEECchHh-CCCccCCCCC
Confidence 954 122 66789999999999887778888999999999999999998 5789999999987 32 2
Q ss_pred cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCC
Q psy7542 213 KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDP 292 (762)
Q Consensus 213 ~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP 292 (762)
.++.|+....+.. ..+.|+.||+.+|.+++++++.|++++|+|||.|+|+...+
T Consensus 211 ~~~~E~~~~~~~~--------------------------~~~~Y~~sK~~~E~~~~~~~~~g~~~~ivRpg~v~G~~~~~ 264 (427)
T 4f6c_A 211 VTFSEADVYKGQL--------------------------LTSPYTRSKFYSELKVLEAVNNGLDGRIVRVGNLTSPYNGR 264 (427)
T ss_dssp CEECTTCSCSSCC--------------------------CCSHHHHHHHHHHHHHHHHHHTTCCEEEEEECCEESCSSSC
T ss_pred ccccccccccCCC--------------------------CCCchHHHHHHHHHHHHHHHHcCCCEEEEeCCeeecCCCCC
Confidence 2455554322221 23899999999999999987669999999999999997653
Q ss_pred CCCCCCCCC--CchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHH
Q psy7542 293 LPGWTDNIN--GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYD 370 (762)
Q Consensus 293 ~pGWidn~~--gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~e 370 (762)
. |..+.. ....++..+..+.... .++++..+++++|||+|++++.++..... +++||++++ ++++|.|
T Consensus 265 ~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~v~DvA~ai~~~~~~~~~-----g~~~~l~~~--~~~s~~e 334 (427)
T 4f6c_A 265 W--HMRNIKTNRFSMVMNDLLQLDCIG-VSMAEMPVDFSFVDTTARQIVALAQVNTP-----QIIYHVLSP--NKMPVKS 334 (427)
T ss_dssp C--CCTTGGGCHHHHHHHHHHHSSEEE-HHHHTCEECCEEHHHHHHHHHHHTTSCCC-----CSEEEESCS--CCEEHHH
T ss_pred c--cccCcchHHHHHHHHHHHhcCCCC-CccccceEEEeeHHHHHHHHHHHHcCCCC-----CCEEEecCC--CCCcHHH
Confidence 1 111111 1223444444444322 24468899999999999999999887653 689999998 8999999
Q ss_pred HHHHHHHhhccCCCCccccccCCccccccCCCchhhHHHHHHhhhhhhhcccccCceeeecHHHHHHHhhcchhhhhccc
Q psy7542 371 IIENGKDIARNKVPLNNVLWYPGGAMTNRGYEPVLKRVHNRIKKGFDIFEYYTKNSWSFKNENLHALRNMMNEKEAIRYE 450 (762)
Q Consensus 371 l~~~i~~~~G~~~P~~~~~w~p~~~~~~lG~kP~l~~l~~ki~~~~~~l~~f~~~~w~Fd~~n~~~L~~~ls~~Dr~~F~ 450 (762)
+++.+.+ .| -.+++...|...... .|..+ +..+.. +-+......||+.++.+.+..+ .
T Consensus 335 l~~~i~~-~g-~~~~~~~~~~~~l~~--~~~~~-~~~~~~---------~~~~~~~~~~d~~~~~~~l~~~--------G 392 (427)
T 4f6c_A 335 LLECVKR-KE-IELVSDESFNEILQK--QDMYE-TIGLTS---------VDREQQLAMIDTTLTLKIMNHI--------S 392 (427)
T ss_dssp HHHHHHS-SC-CEEECHHHHHHHHHH--TTCHH-HHHHHH---------HHHTSEECEECCHHHHHHHHHT--------T
T ss_pred HHHHHHH-cC-CcccCHHHHHHHHHh--cCchh-hhhhhh---------ccccCCceeccHHHHHHHHHhc--------C
Confidence 9999998 54 112222223221100 11111 111111 1112236789999999888655 3
Q ss_pred ccccCCCchHHHHHHHHHHHHhhc
Q psy7542 451 IAMFRDLDEAKAYFEMCIHGARQY 474 (762)
Q Consensus 451 fD~~~~id~W~~Y~~~~~~Girky 474 (762)
|.. ..++ +++++.++.-++..
T Consensus 393 ~~~-~~~~--~~~l~~~~~~l~~~ 413 (427)
T 4f6c_A 393 EKW-PTIT--NNWLYHWAQYIKTI 413 (427)
T ss_dssp CCC-CCCC--HHHHHHHHHHHHHH
T ss_pred CCC-CCCC--HHHHHHHHHHHHHH
Confidence 344 4444 45777776666554
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=281.82 Aligned_cols=305 Identities=16% Similarity=0.196 Sum_probs=207.2
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++. +.+|++++|..... ..+.+..+. ...+++++.+|++++
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~-~~~~~~~l~----------------~~~~~~~~~~Dl~d~ 62 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQ--GIDLIVFDNLSRKG-ATDNLHWLS----------------SLGNFEFVHGDIRNK 62 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCCSTT-HHHHHHHHH----------------TTCCCEEEECCTTCH
T ss_pred cEEEEeCCCchhHHHHHHHHHhC--CCEEEEEeCCCccC-chhhhhhhc----------------cCCceEEEEcCCCCH
Confidence 68999999999999999999998 67899999854221 111222211 024688999999986
Q ss_pred CCCCCHHHHHhhcCC--ccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCcc-EEEEEeCCcccCCCc--
Q psy7542 142 DLGISAEDRQMLSET--IHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQ-LFVYVSTAYCHPKEK-- 213 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~--vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk-~fV~vSSay~~~~~~-- 213 (762)
+ ++.+++++ +|+|||+||..... +.+...+++|+.||.+++++|++. +++ +|||+||.++++...
T Consensus 63 ~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~~~~iv~~SS~~v~g~~~~~ 135 (347)
T 1orr_A 63 N------DVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY-NSNCNIIYSSTNKVYGDLEQY 135 (347)
T ss_dssp H------HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEEGGGGTTCTTS
T ss_pred H------HHHHHHhccCCCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEeccHHHhCCCCcC
Confidence 5 78888877 99999999986542 356678999999999999999987 565 999999986655322
Q ss_pred cccccc--CCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCC
Q psy7542 214 VLEEKT--YPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWK 290 (762)
Q Consensus 214 ~i~E~~--~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~ 290 (762)
+..|+. +..+..+. .++++ ......+.|+.||+.+|++++.++.. |++++++||+.|+|+..
T Consensus 136 ~~~e~~~~~~~~~~~~-------~~~e~--------~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~ 200 (347)
T 1orr_A 136 KYNETETRYTCVDKPN-------GYDES--------TQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQ 200 (347)
T ss_dssp CEEECSSCEEETTCTT-------CBCTT--------SCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTC
T ss_pred Cccccccccccccccc-------Ccccc--------CCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCC
Confidence 211110 00000000 00000 00011268999999999999998776 99999999999999865
Q ss_pred CCCCCCCCCCCC-chHHHHHHhcCC-----eEEEeeCCCcccccccHHHHHHHHHHHhhcc-cCCCCCCceEEEecCCCC
Q psy7542 291 DPLPGWTDNING-PTGLLIGAGKGI-----IRTMYCDYSTCADFLPVDVLVNGVLLSTWNF-LSNPGNTMRVINLTANKD 363 (762)
Q Consensus 291 eP~pGWidn~~g-p~~li~~~~~G~-----l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~-~~~~~~~~~iyNi~s~~~ 363 (762)
.+.. + .+ ...++..+..|. ....+++++..+++++++|+|++++.++... .. .+++||++++..
T Consensus 201 ~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~----~g~~~~v~~~~~ 271 (347)
T 1orr_A 201 FATY---D--QGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKI----RGNAFNIGGTIV 271 (347)
T ss_dssp CCBT---T--BCHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECEEHHHHHHHHHHHHHTHHHH----TTCEEEESSCGG
T ss_pred CCCC---c--CcHHHHHHHHHHhCcccCCCCeEEecCCcceEeeEEHHHHHHHHHHHHhccccC----CCCEEEeCCCCC
Confidence 4210 0 11 123344444443 4456788999999999999999999998752 22 367999998832
Q ss_pred CcccHHHHHHHHHHhhccCCCCccccccCCcc----cc-----c-cCCCchhhHHHHHHhhhhh
Q psy7542 364 FQITWYDIIENGKDIARNKVPLNNVLWYPGGA----MT-----N-RGYEPVLKRVHNRIKKGFD 417 (762)
Q Consensus 364 ~piT~~el~~~i~~~~G~~~P~~~~~w~p~~~----~~-----~-lG~kP~l~~l~~ki~~~~~ 417 (762)
+++|+.|+++.+.+.+|.+.++....+.+... .. . +||+|+. .+.+.+.+..+
T Consensus 272 ~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-~~~e~l~~~~~ 334 (347)
T 1orr_A 272 NSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKV-SAKDGVQKMYD 334 (347)
T ss_dssp GEEEHHHHHHHHHHHHTCCCCEEEECCCSSCCSEECBCCHHHHHHHCCCCCS-CHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhCCCCCceeCCCCCCCcceeecCHHHHHHHHCCCccC-CHHHHHHHHHH
Confidence 35999999999999997665433222211110 00 0 7888876 56666665443
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-30 Score=279.57 Aligned_cols=299 Identities=15% Similarity=0.082 Sum_probs=211.7
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.+++|+|||||||||||++|+++|++. +.+|++++|....... +.+.+ ....+++++.+|
T Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~---~~~~~---------------~~~~~~~~~~~D 65 (357)
T 1rkx_A 6 FWQGKRVFVTGHTGFKGGWLSLWLQTM--GATVKGYSLTAPTVPS---LFETA---------------RVADGMQSEIGD 65 (357)
T ss_dssp HHTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCSSSSC---HHHHT---------------TTTTTSEEEECC
T ss_pred hhCCCEEEEECCCchHHHHHHHHHHhC--CCeEEEEeCCCcccch---hhHhh---------------ccCCceEEEEcc
Confidence 467899999999999999999999998 6789999997643221 11100 012578999999
Q ss_pred cCCCCCCCCHHHHHhhcCC--ccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC
Q psy7542 138 VAVPDLGISAEDRQMLSET--IHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE 212 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~--vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~ 212 (762)
+++++ ++..++++ +|+|||+||.... ...+...+++|+.||.+++++|++++++++|||+||..+++..
T Consensus 66 l~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~ 139 (357)
T 1rkx_A 66 IRDQN------KLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNK 139 (357)
T ss_dssp TTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCC
T ss_pred ccCHH------HHHHHHHhcCCCEEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCC
Confidence 99865 67777765 8999999996432 2345678999999999999999987448999999998766543
Q ss_pred c---ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----------cCCCEEE
Q psy7542 213 K---VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----------AGMPCMI 279 (762)
Q Consensus 213 ~---~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----------~glpv~I 279 (762)
. ++.|+....|. +.|+.||+.+|++++.++. .|+++++
T Consensus 140 ~~~~~~~E~~~~~~~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~ 190 (357)
T 1rkx_A 140 EWIWGYRENEAMGGY-----------------------------DPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVAT 190 (357)
T ss_dssp CSSSCBCTTSCBCCS-----------------------------SHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEE
T ss_pred CcCCCCCCCCCCCCC-----------------------------CccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEE
Confidence 2 34554322222 7899999999999988754 2899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
+||+.|||+...+. ......++..+..|....+ ++++..+++|+|+|+|++++.++..........+++||++
T Consensus 191 lrp~~v~G~~~~~~------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~~~ni~ 263 (357)
T 1rkx_A 191 VRAGNVIGGGDWAL------DRIVPDILRAFEQSQPVII-RNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFG 263 (357)
T ss_dssp EECCCEECTTCCCS------SCHHHHHHHHHHTTCCEEC-SCTTCEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECC
T ss_pred EeeceeeCCCCCcc------ccHHHHHHHHHhcCCCEEE-CCCCCeeccEeHHHHHHHHHHHHHhhhhcCCCCCceEEEC
Confidence 99999999864211 0112345555566665443 4667889999999999999998874210000135799999
Q ss_pred CCCCCcccHHHHHHHHHHhhccCCCCccccc-cC----Ccccc-----c-cCCCchhhHHHHHHhhhhhhh
Q psy7542 360 ANKDFQITWYDIIENGKDIARNKVPLNNVLW-YP----GGAMT-----N-RGYEPVLKRVHNRIKKGFDIF 419 (762)
Q Consensus 360 s~~~~piT~~el~~~i~~~~G~~~P~~~~~w-~p----~~~~~-----~-lG~kP~l~~l~~ki~~~~~~l 419 (762)
++..+++|+.|+++.+.+.+|.+.++..... .+ ..... . +||+|.. .+.+.+.+..+++
T Consensus 264 ~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-~l~e~l~~~~~~~ 333 (357)
T 1rkx_A 264 PNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPRW-NLNTTLEYIVGWH 333 (357)
T ss_dssp CCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHHCCCCCC-CHHHHHHHHHHHH
T ss_pred CCCCCcccHHHHHHHHHHHhCCCCccccCCCCCCcCcccccCCHHHHHHHhCCCcCC-cHHHHHHHHHHHH
Confidence 7522689999999999999976544321100 00 00011 1 7999976 7777777655443
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=272.34 Aligned_cols=266 Identities=16% Similarity=0.121 Sum_probs=198.8
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++. ++.+|++++|...... ++ ....+++++.+|++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~-~g~~V~~~~r~~~~~~------~~----------------~~~~~~~~~~~D~~~~ 57 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAIS------RF----------------LNHPHFHFVEGDISIH 57 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHS-TTCEEEEEESCCGGGG------GG----------------TTCTTEEEEECCTTTC
T ss_pred CeEEEECCCcHHHHHHHHHHHHh-CCCEEEEEeCCcchHH------Hh----------------hcCCCeEEEeccccCc
Confidence 58999999999999999999997 3578999999753210 00 0125789999999985
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--cccc
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--KVLE 216 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~~i~ 216 (762)
. +.+..+++++|+|||+||.... ..+....+++|+.|+.+++++|++. + ++|||+||+.+++.. .+++
T Consensus 58 ~-----~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~v~~SS~~v~g~~~~~~~~ 130 (345)
T 2bll_A 58 S-----EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R-KRIIFPSTSEVYGMCSDKYFD 130 (345)
T ss_dssp S-----HHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T-CEEEEECCGGGGBTCCCSSBC
T ss_pred H-----HHHHhhccCCCEEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHh-C-CeEEEEecHHHcCCCCCCCcC
Confidence 3 2467777889999999997653 2355678999999999999999987 5 899999998665433 3456
Q ss_pred cccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCCCC
Q psy7542 217 EKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPG 295 (762)
Q Consensus 217 E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~pG 295 (762)
|+....+..|. ....+.|+.||+.+|+++..++.. |++++++||+.|||+...+...
T Consensus 131 e~~~~~~~~~~----------------------~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~ 188 (345)
T 2bll_A 131 EDHSNLIVGPV----------------------NKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNA 188 (345)
T ss_dssp TTTCCCBCCCT----------------------TCGGGHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTC
T ss_pred CcccccccCcc----------------------cCcccccHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccc
Confidence 65433211110 001158999999999999988765 9999999999999997653221
Q ss_pred CCCCCC-CchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCC-cccHHHHHH
Q psy7542 296 WTDNIN-GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDF-QITWYDIIE 373 (762)
Q Consensus 296 Widn~~-gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~-piT~~el~~ 373 (762)
+..+.. ....++..+..|....++++++..+++++++|+|++++.++...... ..+++||++++ . ++|+.|+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~--~~g~~~~i~~~--~~~~s~~e~~~ 264 (345)
T 2bll_A 189 ARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNR--CDGEIINIGNP--ENEASIEELGE 264 (345)
T ss_dssp SBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGGGT--TTTEEEEECCT--TSEEEHHHHHH
T ss_pred cccccccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHHHHHHHHHHHHhhcccc--CCCceEEeCCC--CCCCCHHHHHH
Confidence 111111 12345556677777777888899999999999999999999875310 13689999987 5 799999999
Q ss_pred HHHHhhccCC
Q psy7542 374 NGKDIARNKV 383 (762)
Q Consensus 374 ~i~~~~G~~~ 383 (762)
.+.+.+|.+.
T Consensus 265 ~i~~~~g~~~ 274 (345)
T 2bll_A 265 MLLASFEKHP 274 (345)
T ss_dssp HHHHHHHTCT
T ss_pred HHHHHhCCCc
Confidence 9999987553
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=273.26 Aligned_cols=256 Identities=16% Similarity=0.079 Sum_probs=196.5
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+++|||||||||||++|+++|++. +.+|++++|...... .++++.+ ....+++++.+|++
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~-~~~~~~~----------------~~~~~~~~~~~Dl~ 73 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEK--GYRVHGLVARRSSDT-RWRLREL----------------GIEGDIQYEDGDMA 73 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCCSSCC-CHHHHHT----------------TCGGGEEEEECCTT
T ss_pred cCCeEEEECCCChHHHHHHHHHHHC--CCeEEEEeCCCcccc-ccchhhc----------------cccCceEEEECCCC
Confidence 5789999999999999999999998 678999999765422 1222221 01247889999999
Q ss_pred CCCCCCCHHHHHhhcCC--ccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCc-cEEEEEeCCcccCCC-
Q psy7542 140 VPDLGISAEDRQMLSET--IHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHL-QLFVYVSTAYCHPKE- 212 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~--vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~l-k~fV~vSSay~~~~~- 212 (762)
+++ ++.+++++ +|+|||+||.... ..+....+++|+.||.+++++|++. ++ ++|||+||..+++..
T Consensus 74 d~~------~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~SS~~v~g~~~ 146 (335)
T 1rpn_A 74 DAC------SVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQF-SPETRFYQASTSEMFGLIQ 146 (335)
T ss_dssp CHH------HHHHHHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTSEEEEEEEGGGGCSCS
T ss_pred CHH------HHHHHHHHcCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEeCHHHhCCCC
Confidence 765 67777775 6999999998664 3456788999999999999999987 54 899999998665543
Q ss_pred -cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCC
Q psy7542 213 -KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWK 290 (762)
Q Consensus 213 -~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~ 290 (762)
.+++|+....|. +.|+.||+.+|.+++.++.. +++++++||+.+||+..
T Consensus 147 ~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~ 197 (335)
T 1rpn_A 147 AERQDENTPFYPR-----------------------------SPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLR 197 (335)
T ss_dssp SSSBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTS
T ss_pred CCCCCcccCCCCC-----------------------------ChhHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCCC
Confidence 356666444333 68999999999999998776 99999999999999864
Q ss_pred CCCCCCCCCCCCchHHHHHHhcCCe-EEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHH
Q psy7542 291 DPLPGWTDNINGPTGLLIGAGKGII-RTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWY 369 (762)
Q Consensus 291 eP~pGWidn~~gp~~li~~~~~G~l-~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~ 369 (762)
.+ ++.. .....++..+..|.. ....++++..+++++|+|+|++++.++.... .++||++++ +++|+.
T Consensus 198 ~~--~~~~--~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~------~~~~ni~~~--~~~s~~ 265 (335)
T 1rpn_A 198 GI--EFVT--RKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDK------ADDYVVATG--VTTTVR 265 (335)
T ss_dssp CT--TSHH--HHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSSS------CCCEEECCS--CEEEHH
T ss_pred CC--Ccch--HHHHHHHHHHHcCCCceEEeCCCcceeceEEHHHHHHHHHHHHhcCC------CCEEEEeCC--CCccHH
Confidence 31 1100 001233445556653 3456888999999999999999999998653 369999998 889999
Q ss_pred HHHHHHHHhhccC
Q psy7542 370 DIIENGKDIARNK 382 (762)
Q Consensus 370 el~~~i~~~~G~~ 382 (762)
|+++.+.+.+|.+
T Consensus 266 e~~~~i~~~~g~~ 278 (335)
T 1rpn_A 266 DMCQIAFEHVGLD 278 (335)
T ss_dssp HHHHHHHHTTTCC
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999764
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=271.06 Aligned_cols=248 Identities=15% Similarity=0.167 Sum_probs=187.5
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
..|+|||||||||||++|+++|++. +.+|++++|...... ++ ...+++++.+|++
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~---~l--------------------~~~~~~~~~~Dl~ 66 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAA--GHDLVLIHRPSSQIQ---RL--------------------AYLEPECRVAEML 66 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECTTSCGG---GG--------------------GGGCCEEEECCTT
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEecChHhhh---hh--------------------ccCCeEEEEecCC
Confidence 3468999999999999999999998 678999999754321 00 0137889999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc---cc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK---VL 215 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~---~i 215 (762)
+++ ++.++++++|+|||+||.... ..+....+++|+.|+.+++++|++. ++++|||+||..+++... ..
T Consensus 67 d~~------~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~~~~~~~ 139 (342)
T 2x4g_A 67 DHA------GLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQA-RVPRILYVGSAYAMPRHPQGLPG 139 (342)
T ss_dssp CHH------HHHHHTTTCSEEEEC------------CHHHHHHHHHHHHHHHHHHH-TCSCEEEECCGGGSCCCTTSSCB
T ss_pred CHH------HHHHHHcCCCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEECCHHhhCcCCCCCCC
Confidence 865 788999999999999997653 2455678999999999999999997 789999999987665432 22
Q ss_pred ccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCC-CCCC
Q psy7542 216 EEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWK-DPLP 294 (762)
Q Consensus 216 ~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~-eP~p 294 (762)
+|+.+..|.. ...+.|+.||+.+|++++.++..|++++++||+.|||+.. .+
T Consensus 140 ~E~~~~~p~~-------------------------~~~~~Y~~sK~~~e~~~~~~~~~g~~~~ilrp~~v~g~~~~~~-- 192 (342)
T 2x4g_A 140 HEGLFYDSLP-------------------------SGKSSYVLCKWALDEQAREQARNGLPVVIGIPGMVLGELDIGP-- 192 (342)
T ss_dssp CTTCCCSSCC-------------------------TTSCHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEECSCCSSC--
T ss_pred CCCCCCCccc-------------------------cccChHHHHHHHHHHHHHHHhhcCCcEEEEeCCceECCCCccc--
Confidence 5554333310 0127899999999999999865589999999999999864 21
Q ss_pred CCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHH
Q psy7542 295 GWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIEN 374 (762)
Q Consensus 295 GWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~ 374 (762)
+ ...++..+..|....+ ++...++++++|+|++++.++.+... +++||++++ + +|+.|+++.
T Consensus 193 ----~---~~~~~~~~~~~~~~~~---~~~~~~~i~v~Dva~~~~~~~~~~~~-----g~~~~v~~~--~-~s~~e~~~~ 254 (342)
T 2x4g_A 193 ----T---TGRVITAIGNGEMTHY---VAGQRNVIDAAEAGRGLLMALERGRI-----GERYLLTGH--N-LEMADLTRR 254 (342)
T ss_dssp ----S---TTHHHHHHHTTCCCEE---ECCEEEEEEHHHHHHHHHHHHHHSCT-----TCEEEECCE--E-EEHHHHHHH
T ss_pred ----c---HHHHHHHHHcCCCccc---cCCCcceeeHHHHHHHHHHHHhCCCC-----CceEEEcCC--c-ccHHHHHHH
Confidence 1 2345556666665444 56788999999999999999986543 679999998 7 999999999
Q ss_pred HHHhhccCCC
Q psy7542 375 GKDIARNKVP 384 (762)
Q Consensus 375 i~~~~G~~~P 384 (762)
+.+.+|.+.+
T Consensus 255 i~~~~g~~~~ 264 (342)
T 2x4g_A 255 IAELLGQPAP 264 (342)
T ss_dssp HHHHHTCCCC
T ss_pred HHHHhCCCCC
Confidence 9999976554
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=270.35 Aligned_cols=280 Identities=19% Similarity=0.214 Sum_probs=207.2
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++. +.+|+++.|...... .....+++++.+|++++
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~--G~~V~~~~r~~~~~~-----------------------~~~~~~~~~~~~Dl~~~ 55 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLAR--GLEVAVLDNLATGKR-----------------------ENVPKGVPFFRVDLRDK 55 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT--TCEEEEECCCSSCCG-----------------------GGSCTTCCEECCCTTCH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHC--CCEEEEEECCCcCch-----------------------hhcccCeEEEECCCCCH
Confidence 57999999999999999999998 678899988543211 11124678899999986
Q ss_pred CCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCC-cccCC---C
Q psy7542 142 DLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA-YCHPK---E 212 (762)
Q Consensus 142 ~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSa-y~~~~---~ 212 (762)
+ ++.++++ ++|+|||+||..... +.....+++|+.|+.+++++|++. ++++||++||. .+++. .
T Consensus 56 ~------~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iv~~SS~~~~~g~~~~~ 128 (311)
T 2p5y_A 56 E------GVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQY-GVEKLVFASTGGAIYGEVPEG 128 (311)
T ss_dssp H------HHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEHHHHHCCCCTT
T ss_pred H------HHHHHHHhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEeCCChhhcCCCCCC
Confidence 5 6777776 799999999976532 345678999999999999999986 78899999998 44432 2
Q ss_pred cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCC
Q psy7542 213 KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKD 291 (762)
Q Consensus 213 ~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~e 291 (762)
.+++|+....|. +.|+.||+.+|++++.++.. |++++++||+.|||+...
T Consensus 129 ~~~~E~~~~~~~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~ 179 (311)
T 2p5y_A 129 ERAEETWPPRPK-----------------------------SPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQD 179 (311)
T ss_dssp CCBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCC
T ss_pred CCcCCCCCCCCC-----------------------------ChHHHHHHHHHHHHHHHHHHcCCCEEEEeeccccCcCCC
Confidence 356665433332 68999999999999988765 999999999999998654
Q ss_pred CCCCCCCCCCC-chHHHHHHhcCCeEEEe-----eCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCc
Q psy7542 292 PLPGWTDNING-PTGLLIGAGKGIIRTMY-----CDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQ 365 (762)
Q Consensus 292 P~pGWidn~~g-p~~li~~~~~G~l~~i~-----gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~p 365 (762)
+.. ..+ ...++..+..|....++ +++...+++++++|+|++++.++... +++||++++ .+
T Consensus 180 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~-------~~~~~i~~~--~~ 245 (311)
T 2p5y_A 180 PHG-----EAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALALFSL-------EGIYNVGTG--EG 245 (311)
T ss_dssp SSS-----TTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHHHHHHC-------CEEEEESCS--CC
T ss_pred CCC-----cCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHHHHhCC-------CCEEEeCCC--CC
Confidence 210 001 12244455567666666 78888999999999999999998753 479999998 89
Q ss_pred ccHHHHHHHHHHhhccCCCCcccc--------ccCCc-cccccCCCchhhHHHHHHhhhhh
Q psy7542 366 ITWYDIIENGKDIARNKVPLNNVL--------WYPGG-AMTNRGYEPVLKRVHNRIKKGFD 417 (762)
Q Consensus 366 iT~~el~~~i~~~~G~~~P~~~~~--------w~p~~-~~~~lG~kP~l~~l~~ki~~~~~ 417 (762)
+|+.|+++.+.+..|.+.++.... +..+. ....+||+|.. .+.+.+.+..+
T Consensus 246 ~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~lg~~p~~-~~~~~l~~~~~ 305 (311)
T 2p5y_A 246 HTTREVLMAVAEAAGKAPEVQPAPPRPGDLERSVLSPLKLMAHGWRPKV-GFQEGIRLTVD 305 (311)
T ss_dssp EEHHHHHHHHHHHHTCCCCEEEECCCTTCCSBCCBCCHHHHTTTCCCSS-CHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCCCCCceeCCCCccchhhccCCHHHHHHCCCCCCC-CHHHHHHHHHH
Confidence 999999999999997654432111 00000 01117888876 67777766444
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=274.34 Aligned_cols=278 Identities=17% Similarity=0.114 Sum_probs=203.3
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcc-hHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKN-SRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~-~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.+|+|||||||||||++|+++|++. +.+|++++|...... ..+.+.+ .....+++++.+|+
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~----------------~~~~~~~~~~~~Dl 67 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVAS--GEEVTVLDDLRVPPMIPPEGTGK----------------FLEKPVLELEERDL 67 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHT--TCCEEEECCCSSCCSSCCTTSSE----------------EECSCGGGCCHHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHC--CCEEEEEecCCcccccchhhhhh----------------hccCCCeeEEeCcc
Confidence 5789999999999999999999998 678899999765210 0000000 00113445555554
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC--Cc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK--EK 213 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~--~~ 213 (762)
+ ++|+|||+||.... .......++ |+.|+.+++++|++. ++++|||+||..+++. ..
T Consensus 68 ~----------------~~d~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~-~v~~~v~~SS~~v~~~~~~~ 129 (321)
T 3vps_A 68 S----------------DVRLVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSV-GVPKVVVGSTCEVYGQADTL 129 (321)
T ss_dssp T----------------TEEEEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCSCSSS
T ss_pred c----------------cCCEEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHc-CCCeEEEecCHHHhCCCCCC
Confidence 4 78999999998763 223334566 999999999999998 6899999999866554 33
Q ss_pred ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CC-CEEEEeeeeeccCCCC
Q psy7542 214 VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GM-PCMILRPSIIIPIWKD 291 (762)
Q Consensus 214 ~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-gl-pv~IvRPs~V~G~~~e 291 (762)
+++|+....|. +.|+.||+.+|+++..++.. ++ +++|+||+.|||+...
T Consensus 130 ~~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~ 180 (321)
T 3vps_A 130 PTPEDSPLSPR-----------------------------SPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGER 180 (321)
T ss_dssp SBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHSSSSCEEEEEEECEEECTTCC
T ss_pred CCCCCCCCCCC-----------------------------ChhHHHHHHHHHHHHHHHHHcCCCceEEEEeccccCcCCC
Confidence 66776544443 78999999999999999886 89 9999999999998654
Q ss_pred CCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHH
Q psy7542 292 PLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDI 371 (762)
Q Consensus 292 P~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el 371 (762)
+ ......++..+..|....++++++..+++|+++|+|++++.++..... + +||++++ +++|+.|+
T Consensus 181 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~-----g-~~~i~~~--~~~s~~e~ 245 (321)
T 3vps_A 181 P-------DALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLP-----S-VVNFGSG--QSLSVNDV 245 (321)
T ss_dssp T-------TSHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHHHGGGSCCC-----S-EEEESCS--CCEEHHHH
T ss_pred C-------CChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHHHHHhcCCC-----C-eEEecCC--CcccHHHH
Confidence 2 011334566667777777888999999999999999999999987654 5 9999998 89999999
Q ss_pred HHHHHHhhccCCCCccccccCC--------c-cccc-cCCCc-hhhHHHHHHhhhhhhh
Q psy7542 372 IENGKDIARNKVPLNNVLWYPG--------G-AMTN-RGYEP-VLKRVHNRIKKGFDIF 419 (762)
Q Consensus 372 ~~~i~~~~G~~~P~~~~~w~p~--------~-~~~~-lG~kP-~l~~l~~ki~~~~~~l 419 (762)
++.+. .+|.+.++......+. . .... +||+| .. .+.+.+.+..+++
T Consensus 246 ~~~i~-~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~-~~~~~l~~~~~~~ 302 (321)
T 3vps_A 246 IRILQ-ATSPAAEVARKQPRPNEITEFRADTALQTRQIGERSGGI-GIEEGIRLTLEWW 302 (321)
T ss_dssp HHHHH-TTCTTCEEEEECCCTTCCSBCCBCCHHHHHHHCCCSCCC-CHHHHHHHHHHHH
T ss_pred HHHHH-HhCCCCccccCCCCCCCcceeeccHHHHHHHhCCCCCcC-CHHHHHHHHHHHH
Confidence 99999 8876644321111110 0 0111 89999 54 6777777654443
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=274.24 Aligned_cols=256 Identities=19% Similarity=0.216 Sum_probs=196.2
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++. .+++|+++.|....... +.+.++ ....+++++.+|++++
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~-~g~~V~~~~r~~~~~~~-~~~~~~----------------~~~~~~~~~~~Dl~d~ 62 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKN-TQDTVVNIDKLTYAGNL-ESLSDI----------------SESNRYNFEHADICDS 62 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHH-CSCEEEEEECCCTTCCG-GGGTTT----------------TTCTTEEEEECCTTCH
T ss_pred CEEEEECCCchHhHHHHHHHHhc-CCCeEEEEecCCCCCch-hhhhhh----------------hcCCCeEEEECCCCCH
Confidence 57999999999999999999997 35789999996532111 111110 0125789999999986
Q ss_pred CCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHc-CCcc-------EEEEEeCCcc
Q psy7542 142 DLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQM-IHLQ-------LFVYVSTAYC 208 (762)
Q Consensus 142 ~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~-~~lk-------~fV~vSSay~ 208 (762)
+ ++.++++ ++|+|||+||....+ +.+...+++|+.||.+++++|.+. .+++ +|||+||..+
T Consensus 63 ~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v 136 (361)
T 1kew_A 63 A------EITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEV 136 (361)
T ss_dssp H------HHHHHHHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGG
T ss_pred H------HHHHHHhhcCCCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHH
Confidence 5 7888877 899999999987532 345678999999999999999875 2455 9999999865
Q ss_pred cCCCc------------ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CC
Q psy7542 209 HPKEK------------VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GM 275 (762)
Q Consensus 209 ~~~~~------------~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-gl 275 (762)
++... +++|+....| .+.|+.||+.+|.+++.++.. |+
T Consensus 137 ~g~~~~~~~~~~~~~~~~~~E~~~~~~-----------------------------~~~Y~~sK~~~e~~~~~~~~~~gi 187 (361)
T 1kew_A 137 YGDLPHPDEVENSVTLPLFTETTAYAP-----------------------------SSPYSASKASSDHLVRAWRRTYGL 187 (361)
T ss_dssp GCCCCCGGGSCTTSCCCCBCTTSCCCC-----------------------------CSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hCCCcccccccccccCCCCCCCCCCCC-----------------------------CCccHHHHHHHHHHHHHHHHHhCC
Confidence 54332 4455432222 278999999999999998776 99
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
+++++||+.|||+...+. .....++..+..|....+++++....++++++|+|++++.++.... .+++
T Consensus 188 ~~~~vrp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-----~g~~ 255 (361)
T 1kew_A 188 PTIVTNCSNNYGPYHFPE-------KLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGK-----AGET 255 (361)
T ss_dssp CEEEEEECEEESTTCCTT-------SHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC-----TTCE
T ss_pred cEEEEeeceeECCCCCcc-------cHHHHHHHHHHcCCCceEcCCCceeEeeEEHHHHHHHHHHHHhCCC-----CCCE
Confidence 999999999999865320 1122345556667666677888899999999999999999987643 3689
Q ss_pred EEecCCCCCcccHHHHHHHHHHhhccCCC
Q psy7542 356 INLTANKDFQITWYDIIENGKDIARNKVP 384 (762)
Q Consensus 356 yNi~s~~~~piT~~el~~~i~~~~G~~~P 384 (762)
||++++ .++|+.|+++.+.+.+|.+.|
T Consensus 256 ~~v~~~--~~~s~~e~~~~i~~~~g~~~~ 282 (361)
T 1kew_A 256 YNIGGH--NEKKNLDVVFTICDLLDEIVP 282 (361)
T ss_dssp EEECCC--CEEEHHHHHHHHHHHHHHHSC
T ss_pred EEecCC--CeeeHHHHHHHHHHHhCCcCc
Confidence 999998 889999999999999876544
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-30 Score=273.73 Aligned_cols=280 Identities=14% Similarity=0.164 Sum_probs=200.9
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+|+|||||||||||++|+++|++. +.+|+++.|.. .+|++
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~--g~~v~~~~r~~-------------------------------------~~D~~ 42 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQR--GDVELVLRTRD-------------------------------------ELNLL 42 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTC--TTEEEECCCTT-------------------------------------TCCTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhC--CCeEEEEecCc-------------------------------------cCCcc
Confidence 4689999999999999999999998 66778877641 25777
Q ss_pred CCCCCCCHHHHHhhcC--CccEEEEcccccCc----cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC-
Q psy7542 140 VPDLGISAEDRQMLSE--TIHIVYHIAATVRF----DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE- 212 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~--~vDiViH~AA~v~f----~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~- 212 (762)
+++ ++..+++ ++|+|||+||.... ..+....+++|+.||.+++++|++. ++++|||+||..+++..
T Consensus 43 d~~------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~vyg~~~ 115 (321)
T 1e6u_A 43 DSR------AVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN-DVNKLLFLGSSCIYPKLA 115 (321)
T ss_dssp CHH------HHHHHHHHHCCSEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCGGGSCTTC
T ss_pred CHH------HHHHHHHhcCCCEEEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccHHHcCCCC
Confidence 654 6788887 89999999998752 2455678999999999999999997 78999999998766542
Q ss_pred -cccccccCCC-CCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCC
Q psy7542 213 -KVLEEKTYPP-PVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIW 289 (762)
Q Consensus 213 -~~i~E~~~~~-p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~ 289 (762)
.+++|+.... +..|. .+.|+.+|+.+|++++.++.. +++++++||+.|||+.
T Consensus 116 ~~~~~E~~~~~~~~~p~-------------------------~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~ 170 (321)
T 1e6u_A 116 KQPMAESELLQGTLEPT-------------------------NEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPH 170 (321)
T ss_dssp CSSBCGGGTTSSCCCGG-------------------------GHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTT
T ss_pred CCCcCccccccCCCCCC-------------------------CCccHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcC
Confidence 3555653211 11110 148999999999999998765 9999999999999987
Q ss_pred CCCCCCCCCCCCC-chHHHHHHh----cC-CeEEEeeCCCcccccccHHHHHHHHHHHhhcccCC----CCCCceEEEec
Q psy7542 290 KDPLPGWTDNING-PTGLLIGAG----KG-IIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSN----PGNTMRVINLT 359 (762)
Q Consensus 290 ~eP~pGWidn~~g-p~~li~~~~----~G-~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~----~~~~~~iyNi~ 359 (762)
..+.+. ..+ ...++..+. .| ....++++++..+++|+|+|+|++++.++.+.... ....+++||++
T Consensus 171 ~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~~~ni~ 246 (321)
T 1e6u_A 171 DNFHPS----NSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVG 246 (321)
T ss_dssp CCCCTT----CSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEES
T ss_pred CCCCCC----CCccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEEHHHHHHHHHHHHhCcccccccccccCCceEEeC
Confidence 643211 011 123444443 24 44556788899999999999999999999865420 00025799999
Q ss_pred CCCCCcccHHHHHHHHHHhhccCCCCccccccCC----cc-----ccccCCCchhhHHHHHHhhhhh
Q psy7542 360 ANKDFQITWYDIIENGKDIARNKVPLNNVLWYPG----GA-----MTNRGYEPVLKRVHNRIKKGFD 417 (762)
Q Consensus 360 s~~~~piT~~el~~~i~~~~G~~~P~~~~~w~p~----~~-----~~~lG~kP~l~~l~~ki~~~~~ 417 (762)
++ .++|+.|+++.+.+.+|.+.++......+. .. ...+||+|+. .+.+.+.+..+
T Consensus 247 ~~--~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~-~~~~~l~~~~~ 310 (321)
T 1e6u_A 247 TG--VDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEI-SLEAGLASTYQ 310 (321)
T ss_dssp CS--CCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBCCHHHHHTTCCCCC-CHHHHHHHHHH
T ss_pred CC--CCccHHHHHHHHHHHhCCCCceEeCCCCCCCcccccCCHHHHHhcCCccCC-cHHHHHHHHHH
Confidence 98 889999999999999976543221100000 00 1117888876 66666666444
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=274.57 Aligned_cols=268 Identities=17% Similarity=0.094 Sum_probs=200.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+||||| +||||++|+++|++. +.+|+++.|.... ...+++++.+|++
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~--g~~V~~~~r~~~~---------------------------~~~~~~~~~~Dl~ 51 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQ--GHEVTGLRRSAQP---------------------------MPAGVQTLIADVT 51 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHT--TCCEEEEECTTSC---------------------------CCTTCCEEECCTT
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHC--CCEEEEEeCCccc---------------------------cccCCceEEccCC
Confidence 568999999 599999999999998 6788999997542 1257889999999
Q ss_pred CCCCCCCHHHHHhhcCC-ccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--cccc
Q psy7542 140 VPDLGISAEDRQMLSET-IHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--KVLE 216 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~-vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~~i~ 216 (762)
+++ ++..++++ +|+|||+||... ......+++|+.|+.+++++|++. ++++|||+||+.+++.. .+++
T Consensus 52 d~~------~~~~~~~~~~d~vih~a~~~~--~~~~~~~~~n~~~~~~ll~a~~~~-~~~~~v~~SS~~vyg~~~~~~~~ 122 (286)
T 3gpi_A 52 RPD------TLASIVHLRPEILVYCVAASE--YSDEHYRLSYVEGLRNTLSALEGA-PLQHVFFVSSTGVYGQEVEEWLD 122 (286)
T ss_dssp CGG------GCTTGGGGCCSEEEECHHHHH--HC-----CCSHHHHHHHHHHTTTS-CCCEEEEEEEGGGCCCCCSSEEC
T ss_pred ChH------HHHHhhcCCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHHHHHhhC-CCCEEEEEcccEEEcCCCCCCCC
Confidence 876 56677776 999999999753 334567889999999999999986 78999999998665543 3567
Q ss_pred cccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCC
Q psy7542 217 EKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGW 296 (762)
Q Consensus 217 E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGW 296 (762)
|+....|. +.|+.||+.+|++ .++ ++++|+||+.|||+...
T Consensus 123 E~~~~~p~-----------------------------~~Y~~sK~~~E~~-~~~----~~~~ilR~~~v~G~~~~----- 163 (286)
T 3gpi_A 123 EDTPPIAK-----------------------------DFSGKRMLEAEAL-LAA----YSSTILRFSGIYGPGRL----- 163 (286)
T ss_dssp TTSCCCCC-----------------------------SHHHHHHHHHHHH-GGG----SSEEEEEECEEEBTTBC-----
T ss_pred CCCCCCCC-----------------------------ChhhHHHHHHHHH-Hhc----CCeEEEecccccCCCch-----
Confidence 76554443 7899999999999 554 89999999999998532
Q ss_pred CCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHH
Q psy7542 297 TDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGK 376 (762)
Q Consensus 297 idn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~ 376 (762)
.++..+.. .. ..++++...++++++|+|++++.++..+.. ...+++||++++ +++|+.|+++.+.
T Consensus 164 --------~~~~~~~~-~~--~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~--~~~~~~~~~~~~--~~~s~~e~~~~i~ 228 (286)
T 3gpi_A 164 --------RMIRQAQT-PE--QWPARNAWTNRIHRDDGAAFIAYLIQQRSH--AVPERLYIVTDN--QPLPVHDLLRWLA 228 (286)
T ss_dssp --------HHHHHTTC-GG--GSCSSBCEECEEEHHHHHHHHHHHHHHHTT--SCCCSEEEECCS--CCEEHHHHHHHHH
T ss_pred --------hHHHHHHh-cc--cCCCcCceeEEEEHHHHHHHHHHHHhhhcc--CCCCceEEEeCC--CCCCHHHHHHHHH
Confidence 23333333 21 236778889999999999999999988521 014789999998 8999999999999
Q ss_pred HhhccCCCCccccccCCc------cccccCCCchhhHHHHHHhhhhhhhc
Q psy7542 377 DIARNKVPLNNVLWYPGG------AMTNRGYEPVLKRVHNRIKKGFDIFE 420 (762)
Q Consensus 377 ~~~G~~~P~~~~~w~p~~------~~~~lG~kP~l~~l~~ki~~~~~~l~ 420 (762)
+.+|.+.++......+.. .+..+||+|++..+.+.+.+..+..+
T Consensus 229 ~~~g~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~l~e~l~~~~~~~~ 278 (286)
T 3gpi_A 229 DRQGIAYPAGATPPVQGNKKLSNARLLASGYQLIYPDYVSGYGALLAAMR 278 (286)
T ss_dssp HHTTCCCCCSCCCCBCSSCEECCHHHHHTTCCCSSCSHHHHHHHHHHHHT
T ss_pred HHcCCCCCCCCCcccCCCeEeeHHHHHHcCCCCcCCcHHHHHHHHHHHHh
Confidence 999876655432211110 01118999887567777777555443
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.5e-29 Score=268.69 Aligned_cols=286 Identities=22% Similarity=0.239 Sum_probs=207.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|||||||||||++|+++|++. +.+|++++|...+.. +.+..+ ....++.++.+|+
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~--~~~~~~----------------~~~~~~~~~~~D~ 84 (343)
T 2b69_A 25 KDRKRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNFFTGRK--RNVEHW----------------IGHENFELINHDV 84 (343)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCSSCCG--GGTGGG----------------TTCTTEEEEECCT
T ss_pred cCCCEEEEEcCccHHHHHHHHHHHHC--CCEEEEEeCCCccch--hhhhhh----------------ccCCceEEEeCcc
Confidence 47899999999999999999999998 678999999754321 011000 0125789999999
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--c
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--K 213 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~ 213 (762)
.++. +.++|+|||+||.... .......+++|+.|+.+++++|++. ++ +|||+||+.+++.. .
T Consensus 85 ~~~~-----------~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~v~g~~~~~ 151 (343)
T 2b69_A 85 VEPL-----------YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV-GA-RLLLASTSEVYGDPEVH 151 (343)
T ss_dssp TSCC-----------CCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-TC-EEEEEEEGGGGBSCSSS
T ss_pred CChh-----------hcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHh-CC-cEEEECcHHHhCCCCCC
Confidence 8764 3579999999997653 3456678999999999999999987 44 89999998665433 3
Q ss_pred ccccccCC--CCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCC
Q psy7542 214 VLEEKTYP--PPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWK 290 (762)
Q Consensus 214 ~i~E~~~~--~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~ 290 (762)
+++|+.+. .|..+ .+.|+.||+.+|+++..++.. +++++++||+.|||+..
T Consensus 152 ~~~E~~~~~~~~~~~--------------------------~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~ 205 (343)
T 2b69_A 152 PQSEDYWGHVNPIGP--------------------------RACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRM 205 (343)
T ss_dssp SBCTTCCCBCCSSST--------------------------THHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred CCcccccccCCCCCC--------------------------CCchHHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCC
Confidence 56665322 12111 167999999999999988765 99999999999999875
Q ss_pred CCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHH
Q psy7542 291 DPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYD 370 (762)
Q Consensus 291 eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~e 370 (762)
.+..+ .....++..+..|....++++++..+++++|+|+|++++.++.... +++||++++ +++|+.|
T Consensus 206 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~------~~~~~i~~~--~~~s~~e 272 (343)
T 2b69_A 206 HMNDG-----RVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNV------SSPVNLGNP--EEHTILE 272 (343)
T ss_dssp CTTCC-----CHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSSC------CSCEEESCC--CEEEHHH
T ss_pred CCCcc-----cHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHHHHHHhcCC------CCeEEecCC--CCCcHHH
Confidence 43211 1123455566677766778889999999999999999999886532 468999998 8999999
Q ss_pred HHHHHHHhhccCCCCcccc--------ccCCcc-ccc-cCCCchhhHHHHHHhhhhh
Q psy7542 371 IIENGKDIARNKVPLNNVL--------WYPGGA-MTN-RGYEPVLKRVHNRIKKGFD 417 (762)
Q Consensus 371 l~~~i~~~~G~~~P~~~~~--------w~p~~~-~~~-lG~kP~l~~l~~ki~~~~~ 417 (762)
+++.+.+.+|.+.++.... +..... ... +||+|.. .+.+.+.+..+
T Consensus 273 ~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~d~~k~~~~lG~~p~~-~l~e~l~~~~~ 328 (343)
T 2b69_A 273 FAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVV-PLEEGLNKAIH 328 (343)
T ss_dssp HHHHHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHHHCCCCCS-CHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCceeCCCCCCCCceecCCHHHHHHHcCCCCCC-CHHHHHHHHHH
Confidence 9999999997654332110 011111 001 7898876 56777766444
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=273.65 Aligned_cols=252 Identities=17% Similarity=0.097 Sum_probs=190.7
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|+|||||||||||++|+++|++..++.+|++++|...... + ..+++++.+|+++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~----~---------------------~~~~~~~~~D~~d 56 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD----V---------------------VNSGPFEVVNALD 56 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH----H---------------------HHSSCEEECCTTC
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc----c---------------------cCCCceEEecCCC
Confidence 47899999999999999999998722457899999754311 0 1256789999998
Q ss_pred CCCCCCHHHHHhhcC--CccEEEEcccccCc--cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC---c
Q psy7542 141 PDLGISAEDRQMLSE--TIHIVYHIAATVRF--DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE---K 213 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~--~vDiViH~AA~v~f--~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~---~ 213 (762)
++ ++.++++ ++|+|||+||.... ..+....+++|+.||.+++++|++. ++++|||+||..+++.. .
T Consensus 57 ~~------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~SS~~~~~~~~~~~ 129 (312)
T 2yy7_A 57 FN------QIEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAK-KIKKIFWPSSIAVFGPTTPKE 129 (312)
T ss_dssp HH------HHHHHHHHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTT-SCSEEECCEEGGGCCTTSCSS
T ss_pred HH------HHHHHHhhcCCCEEEECCccCCCchhhChHHHHHHHHHHHHHHHHHHHHc-CCCEEEEeccHHHhCCCCCCC
Confidence 65 7788777 89999999997643 2455678999999999999999987 78899999999766542 2
Q ss_pred ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCC
Q psy7542 214 VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDP 292 (762)
Q Consensus 214 ~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP 292 (762)
+++|+....|. +.|+.||+.+|+++..++.. |++++++||+.|||+...|
T Consensus 130 ~~~e~~~~~~~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~ 180 (312)
T 2yy7_A 130 NTPQYTIMEPS-----------------------------TVYGISKQAGERWCEYYHNIYGVDVRSIRYPGLISWSTPP 180 (312)
T ss_dssp SBCSSCBCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCEEECEEECEEECSSSCC
T ss_pred CccccCcCCCC-----------------------------chhHHHHHHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCC
Confidence 45555333332 78999999999999988765 9999999999999987654
Q ss_pred CCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHH
Q psy7542 293 LPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDII 372 (762)
Q Consensus 293 ~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~ 372 (762)
..+. .......+.....+.....+++++..+++++|+|+|++++.++...... ...+++||+++ .++|+.|++
T Consensus 181 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~-~~~~~~~ni~~---~~~s~~e~~ 253 (312)
T 2yy7_A 181 GGGT---TDYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAIDATINIMKAPVEK-IKIHSSYNLAA---MSFTPTEIA 253 (312)
T ss_dssp CSCT---TTHHHHHHHHHHHTSEEEESSCTTCCEEEEEHHHHHHHHHHHHHSCGGG-CCCSSCEECCS---EEECHHHHH
T ss_pred CCch---hhhHHHHHHHHHcCCCeEEecCCCceeeeeeHHHHHHHHHHHHhCcccc-cccCceEEeCC---CccCHHHHH
Confidence 2211 0111223333344444456778888999999999999999999875431 00137999984 579999999
Q ss_pred HHHHHhhc
Q psy7542 373 ENGKDIAR 380 (762)
Q Consensus 373 ~~i~~~~G 380 (762)
+.+.+..|
T Consensus 254 ~~i~~~~~ 261 (312)
T 2yy7_A 254 NEIKKHIP 261 (312)
T ss_dssp HHHHTTCT
T ss_pred HHHHHHCC
Confidence 99999886
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=266.03 Aligned_cols=298 Identities=14% Similarity=0.140 Sum_probs=204.6
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCc-chHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNK-NSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~-~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
|+|||||||||||++|+++|++. +.+|+++.|..... ...+++.+. ...++.++.+|+++
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~--G~~V~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~Dl~~ 61 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQN--GHDVIILDNLCNSKRSVLPVIERL-----------------GGKHPTFVEGDIRN 61 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCSSCCTTHHHHHHHH-----------------HTSCCEEEECCTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCEEEEEecCCCcchhHHHHHHhh-----------------cCCcceEEEccCCC
Confidence 57999999999999999999998 67888888754322 112222111 12468899999998
Q ss_pred CCCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC--Cc
Q psy7542 141 PDLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK--EK 213 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~--~~ 213 (762)
++ ++.++++ ++|+|||+||..... +.....+++|+.||.+++++|++. ++++|||+||+.+++. ..
T Consensus 62 ~~------~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~SS~~~~g~~~~~ 134 (338)
T 1udb_A 62 EA------LMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSSSATVYGDNPKI 134 (338)
T ss_dssp HH------HHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCSCCSS
T ss_pred HH------HHHHHhhccCCCEEEECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEEccHHHhCCCCCC
Confidence 65 5666665 599999999976432 334568899999999999999887 7889999999866543 23
Q ss_pred ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--CCCEEEEeeeeeccCCCC
Q psy7542 214 VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--GMPCMILRPSIIIPIWKD 291 (762)
Q Consensus 214 ~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--glpv~IvRPs~V~G~~~e 291 (762)
+++|+....| ..+.|+.||+.+|++++.++.. +++++|+||++|||+...
T Consensus 135 ~~~e~~~~~~----------------------------~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~ 186 (338)
T 1udb_A 135 PYVESFPTGT----------------------------PQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPS 186 (338)
T ss_dssp SBCTTSCCCC----------------------------CSSHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTT
T ss_pred CcCcccCCCC----------------------------CCChHHHHHHHHHHHHHHHHHhcCCCceEEEeeceecCCCcc
Confidence 4555433222 1268999999999999998764 799999999999998543
Q ss_pred CCCCCCCCC--CCchHHHHHHhc--CCeEEEee------CCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 292 PLPGWTDNI--NGPTGLLIGAGK--GIIRTMYC------DYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 292 P~pGWidn~--~gp~~li~~~~~--G~l~~i~g------d~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
...|..... ......+..... +....+.+ ++++.+++|+|+|+|++++.++...... ..+++||++++
T Consensus 187 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~--~~~~~yni~~~ 264 (338)
T 1udb_A 187 GDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK--PGVHIYNLGAG 264 (338)
T ss_dssp SSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTC--CEEEEEEESCS
T ss_pred cccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeEEHHHHHHHHHHHHhhhhcc--CCCcEEEecCC
Confidence 222211110 111222333332 33333443 5678899999999999999988764211 02479999998
Q ss_pred CCCcccHHHHHHHHHHhhccCCCCccccccC--------Ccc-ccc-cCCCchhhHHHHHHhhhhhh
Q psy7542 362 KDFQITWYDIIENGKDIARNKVPLNNVLWYP--------GGA-MTN-RGYEPVLKRVHNRIKKGFDI 418 (762)
Q Consensus 362 ~~~piT~~el~~~i~~~~G~~~P~~~~~w~p--------~~~-~~~-lG~kP~l~~l~~ki~~~~~~ 418 (762)
+++|+.|+++.+.+..|.+.|.......+ +.. ... +||+|+. .+.+.+.+..++
T Consensus 265 --~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~-~l~~~l~~~~~w 328 (338)
T 1udb_A 265 --VGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTR-TLDEMAQDTWHW 328 (338)
T ss_dssp --CCEEHHHHHHHHHHHHTSCCCEEEECCCTTCCSBCCBCCHHHHHHHCCCCCC-CHHHHHHHHHHH
T ss_pred --CceeHHHHHHHHHHHhCCCCcceeCCCCCCchhhhhcCHHHHHHHcCCCcCC-CHHHHHHHHHHH
Confidence 88999999999999997665432211111 100 001 7999876 677777665443
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-29 Score=267.14 Aligned_cols=256 Identities=20% Similarity=0.076 Sum_probs=194.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|||||||||||++|+++|++. +.+|++++|....... ++++++. ...+++++.+|+
T Consensus 1 m~~~~vlVtGatG~iG~~l~~~L~~~--G~~V~~~~r~~~~~~~-~~~~~~~----------------~~~~~~~~~~Dl 61 (345)
T 2z1m_A 1 MSGKRALITGIRGQDGAYLAKLLLEK--GYEVYGADRRSGEFAS-WRLKELG----------------IENDVKIIHMDL 61 (345)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEECSCCSTTTT-HHHHHTT----------------CTTTEEECCCCT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEECCCccccc-ccHhhcc----------------ccCceeEEECCC
Confidence 36789999999999999999999998 6789999997654221 2232210 124788999999
Q ss_pred CCCCCCCCHHHHHhhcCC--ccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCc-cEEEEEeCCcccCCC
Q psy7542 139 AVPDLGISAEDRQMLSET--IHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHL-QLFVYVSTAYCHPKE 212 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~--vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~l-k~fV~vSSay~~~~~ 212 (762)
++++ ++.+++++ +|+|||+||.... .+.+...+++|+.||.+++++|+++ ++ ++|||+||.++++..
T Consensus 62 ~d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~-~~~~~iv~~SS~~vyg~~ 134 (345)
T 2z1m_A 62 LEFS------NIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTV-KPDTKFYQASTSEMFGKV 134 (345)
T ss_dssp TCHH------HHHHHHHHHCCSEEEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHH-CTTCEEEEEEEGGGGCSC
T ss_pred CCHH------HHHHHHHhcCCCEEEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEEechhhcCCC
Confidence 9865 67777765 6999999998653 2456788999999999999999987 55 899999998665432
Q ss_pred --cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCC
Q psy7542 213 --KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIW 289 (762)
Q Consensus 213 --~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~ 289 (762)
.+++|+....|. +.|+.||+.+|.+++.++.. +++++++|+..++|+.
T Consensus 135 ~~~~~~e~~~~~~~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg 185 (345)
T 2z1m_A 135 QEIPQTEKTPFYPR-----------------------------SPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPL 185 (345)
T ss_dssp SSSSBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred CCCCCCccCCCCCC-----------------------------ChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCC
Confidence 345565433332 68999999999999998876 8999999999999985
Q ss_pred CCCCCCCCCCCCC--chHHHHHHhcCCe-EEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcc
Q psy7542 290 KDPLPGWTDNING--PTGLLIGAGKGII-RTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQI 366 (762)
Q Consensus 290 ~eP~pGWidn~~g--p~~li~~~~~G~l-~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~pi 366 (762)
.. ++... ...++..+..|.. ....++++..+++++++|+|++++.++.... .++||++++ .++
T Consensus 186 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~a~~~~~~~~~------~~~~~i~~~--~~~ 251 (345)
T 2z1m_A 186 RG------IEFVTRKITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQPE------PDDYVIATG--ETH 251 (345)
T ss_dssp SC------TTSHHHHHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHHHHHHHHHTSSS------CCCEEECCS--CCE
T ss_pred CC------CcchhHHHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHHHHHHHHHhCCC------CceEEEeCC--CCc
Confidence 32 11110 0112333445543 3456788889999999999999999987543 368999998 889
Q ss_pred cHHHHHHHHHHhhccCC
Q psy7542 367 TWYDIIENGKDIARNKV 383 (762)
Q Consensus 367 T~~el~~~i~~~~G~~~ 383 (762)
|+.|+++.+.+.+|.+.
T Consensus 252 s~~e~~~~i~~~~g~~~ 268 (345)
T 2z1m_A 252 TVREFVEKAAKIAGFDI 268 (345)
T ss_dssp EHHHHHHHHHHHTTCCE
T ss_pred cHHHHHHHHHHHhCCCc
Confidence 99999999999997653
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-29 Score=270.98 Aligned_cols=249 Identities=15% Similarity=0.176 Sum_probs=190.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCC-cEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCEN-VKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~-v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++|+|||||||||||++|+++|++. + .+|+++.|....... . ...++. +.+|
T Consensus 44 ~~~~~vlVtGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~----------------------~-~~~~~~-~~~d 97 (357)
T 2x6t_A 44 IEGRMIIVTGGAGFIGSNIVKALNDK--GITDILVVDNLKDGTKF----------------------V-NLVDLN-IADY 97 (357)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHT--TCCCEEEEECCSSGGGG----------------------G-GTTTSC-CSEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCcEEEEEecCCCcchh----------------------h-cccCce-Eeee
Confidence 46789999999999999999999998 5 588999987543210 0 011233 6789
Q ss_pred cCCCCCCCCHHHHHhhcC-----CccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC
Q psy7542 138 VAVPDLGISAEDRQMLSE-----TIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK 211 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~-----~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~ 211 (762)
+++++ .++.+++ ++|+|||+||.... .......+++|+.||.+++++|++. ++ +|||+||..+++.
T Consensus 98 ~~~~~------~~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~-~~-r~V~~SS~~v~g~ 169 (357)
T 2x6t_A 98 MDKED------FLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSAATYGG 169 (357)
T ss_dssp EEHHH------HHHHHHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH-TC-CEEEEEEGGGGCS
T ss_pred cCcHH------HHHHHHhhcccCCCCEEEECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEcchHHhCC
Confidence 88754 5777776 59999999998764 3567789999999999999999987 66 9999999866554
Q ss_pred Cc--ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccC
Q psy7542 212 EK--VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPI 288 (762)
Q Consensus 212 ~~--~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~ 288 (762)
.. +++|+....|. +.|+.||+.+|+++..++.. |++++++||+.|||+
T Consensus 170 ~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp 220 (357)
T 2x6t_A 170 RTSDFIESREYEKPL-----------------------------NVFGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGP 220 (357)
T ss_dssp CSSCCCSSGGGCCCS-----------------------------SHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESS
T ss_pred CCCCCcCCcCCCCCC-----------------------------ChhHHHHHHHHHHHHHHHHHcCCCEEEEecCeEECC
Confidence 32 55665433332 78999999999999998876 899999999999998
Q ss_pred CCCCCCCCCCCCCC-chHHHHHHhcCCeEEEeeCCCc-ccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcc
Q psy7542 289 WKDPLPGWTDNING-PTGLLIGAGKGIIRTMYCDYST-CADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQI 366 (762)
Q Consensus 289 ~~eP~pGWidn~~g-p~~li~~~~~G~l~~i~gd~~~-~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~pi 366 (762)
...+.. +... ...++..+..|....++++++. ..++++++|+|++++.++.... +++||++++ .++
T Consensus 221 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~------~~~~~i~~~--~~~ 288 (357)
T 2x6t_A 221 REGHKG----SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV------SGIFNLGTG--RAE 288 (357)
T ss_dssp SCTTCG----GGSCHHHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHHHHHHHHHCC------CEEEEESCS--CCE
T ss_pred CCCCCc----ccchHHHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHHHHHHHhcCC------CCeEEecCC--Ccc
Confidence 754211 1111 1234555666766667778888 8999999999999999987653 479999998 889
Q ss_pred cHHHHHHHHHHhhccC
Q psy7542 367 TWYDIIENGKDIARNK 382 (762)
Q Consensus 367 T~~el~~~i~~~~G~~ 382 (762)
|+.|+++.+.+.+|.+
T Consensus 289 s~~e~~~~i~~~~g~~ 304 (357)
T 2x6t_A 289 SFQAVADATLAYHKKG 304 (357)
T ss_dssp EHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHHHHcCCC
Confidence 9999999999999765
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-29 Score=264.54 Aligned_cols=245 Identities=16% Similarity=0.176 Sum_probs=175.6
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCC-cEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCEN-VKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~-v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
+|||||||||||++|+++|++. + .+|+++.|....... ..+ .++. +.+|++++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~--g~~~V~~~~r~~~~~~~-~~~----------------------~~~~-~~~d~~~~ 54 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDK--GITDILVVDNLKDGTKF-VNL----------------------VDLN-IADYMDKE 54 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTT--TCCCEEEEECCSSGGGG-HHH----------------------HTSC-CSEEEEHH
T ss_pred CEEEEcCccHHHHHHHHHHHHC--CCcEEEEEccCCCCchh-hhc----------------------Ccce-eccccccH
Confidence 4899999999999999999998 5 588999997643211 001 1222 67898875
Q ss_pred CCCCCHHHHHhhcCC-----ccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc--
Q psy7542 142 DLGISAEDRQMLSET-----IHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK-- 213 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~-----vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~-- 213 (762)
+ .+..++++ +|+|||+||.... ..+....+++|+.|+.+++++|++. ++ +|||+||..+++...
T Consensus 55 ~------~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~v~g~~~~~ 126 (310)
T 1eq2_A 55 D------FLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EI-PFLYASSAATYGGRTSD 126 (310)
T ss_dssp H------HHHHHHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH-TC-CEEEEEEGGGGTTCCSC
T ss_pred H------HHHHHHhccccCCCcEEEECcccccCcccCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEeeHHHhCCCCCC
Confidence 4 67777764 9999999998764 3466789999999999999999987 67 999999986655432
Q ss_pred ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCC
Q psy7542 214 VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDP 292 (762)
Q Consensus 214 ~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP 292 (762)
+++|+....|. +.|+.+|+.+|.++..++.. |++++++||+.|||+...+
T Consensus 127 ~~~E~~~~~p~-----------------------------~~Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~ 177 (310)
T 1eq2_A 127 FIESREYEKPL-----------------------------NVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGH 177 (310)
T ss_dssp BCSSGGGCCCS-----------------------------SHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGG
T ss_pred CCCCCCCCCCC-----------------------------ChhHHHHHHHHHHHHHHHHHcCCCEEEEeCCcEECcCCCC
Confidence 55665433332 78999999999999998766 8999999999999986532
Q ss_pred CCCCCCCCCC-chHHHHHHhcCCeEEEeeCCCc-ccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHH
Q psy7542 293 LPGWTDNING-PTGLLIGAGKGIIRTMYCDYST-CADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYD 370 (762)
Q Consensus 293 ~pGWidn~~g-p~~li~~~~~G~l~~i~gd~~~-~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~e 370 (762)
.. +..+ ...++..+..|....++++++. .+++++++|+|++++.++.... +++||++++ .++|+.|
T Consensus 178 ~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~~~~~~~------~~~~~i~~~--~~~s~~e 245 (310)
T 1eq2_A 178 KG----SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV------SGIFNLGTG--RAESFQA 245 (310)
T ss_dssp GG----GGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHCC------CEEEEESCS--CCBCHHH
T ss_pred CC----ccchHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHHHHHHHHHhcCC------CCeEEEeCC--CccCHHH
Confidence 10 1111 1234555666765566778888 9999999999999999987643 479999998 8899999
Q ss_pred HHHHHHHhhccC
Q psy7542 371 IIENGKDIARNK 382 (762)
Q Consensus 371 l~~~i~~~~G~~ 382 (762)
+++.+.+.+|.+
T Consensus 246 ~~~~i~~~~g~~ 257 (310)
T 1eq2_A 246 VADATLAYHKKG 257 (310)
T ss_dssp HHHHC-------
T ss_pred HHHHHHHHcCCC
Confidence 999999998765
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=258.34 Aligned_cols=223 Identities=21% Similarity=0.225 Sum_probs=180.8
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++. +.+|++++|. .+|++++
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~--------------------------------------~~D~~d~ 45 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPE--EYDIYPFDKK--------------------------------------LLDITNI 45 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTT--TEEEEEECTT--------------------------------------TSCTTCH
T ss_pred eEEEEECCCCHHHHHHHHHHHhC--CCEEEEeccc--------------------------------------ccCCCCH
Confidence 48999999999999999999998 7899999982 2677765
Q ss_pred CCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--cc
Q psy7542 142 DLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--KV 214 (762)
Q Consensus 142 ~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~~ 214 (762)
+ ++.++++ ++|+|||+||..... +.....+++|+.|+.+++++|++. ++ +|||+||.++++.. .+
T Consensus 46 ~------~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~v~~SS~~vy~~~~~~~ 117 (287)
T 3sc6_A 46 S------QVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLV-GA-KLVYISTDYVFQGDRPEG 117 (287)
T ss_dssp H------HHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEGGGSCCCCSSC
T ss_pred H------HHHHHHHhcCCCEEEECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEchhhhcCCCCCCC
Confidence 4 6777777 699999999987643 466789999999999999999997 55 69999998666543 46
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLP 294 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~p 294 (762)
++|+..+.|. +.|+.+|+.+|++++.+ ..+++++||+.|||+....
T Consensus 118 ~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~---~~~~~ilR~~~v~G~~~~~-- 163 (287)
T 3sc6_A 118 YDEFHNPAPI-----------------------------NIYGASKYAGEQFVKEL---HNKYFIVRTSWLYGKYGNN-- 163 (287)
T ss_dssp BCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHH---CSSEEEEEECSEECSSSCC--
T ss_pred CCCCCCCCCC-----------------------------CHHHHHHHHHHHHHHHh---CCCcEEEeeeeecCCCCCc--
Confidence 7776555443 78999999999999988 4589999999999985321
Q ss_pred CCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHH
Q psy7542 295 GWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIEN 374 (762)
Q Consensus 295 GWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~ 374 (762)
....++..+..|....+.+ +...++++++|+|++++.++.+.. +++||++++ +++|+.|+++.
T Consensus 164 -------~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~~~------~~~~~i~~~--~~~s~~e~~~~ 226 (287)
T 3sc6_A 164 -------FVKTMIRLGKEREEISVVA--DQIGSPTYVADLNVMINKLIHTSL------YGTYHVSNT--GSCSWFEFAKK 226 (287)
T ss_dssp -------HHHHHHHHHTTCSEEEEEC--SCEECCEEHHHHHHHHHHHHTSCC------CEEEECCCB--SCEEHHHHHHH
T ss_pred -------HHHHHHHHHHcCCCeEeec--CcccCceEHHHHHHHHHHHHhCCC------CCeEEEcCC--CcccHHHHHHH
Confidence 1233455555666655655 478999999999999999988654 479999998 88999999999
Q ss_pred HHHhhccCC
Q psy7542 375 GKDIARNKV 383 (762)
Q Consensus 375 i~~~~G~~~ 383 (762)
+.+.+|.+.
T Consensus 227 i~~~~g~~~ 235 (287)
T 3sc6_A 227 IFSYANMKV 235 (287)
T ss_dssp HHHHHTCCC
T ss_pred HHHHcCCCc
Confidence 999997653
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=288.32 Aligned_cols=315 Identities=17% Similarity=0.174 Sum_probs=215.1
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcc-hHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKN-SRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~-~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
.+++|+|||||||||||++|+++|++. +.+|++++|...... ..+++..+ ...+++++.+
T Consensus 8 ~~~~~~ilVTGatG~IG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~l~~~-----------------~~~~v~~v~~ 68 (699)
T 1z45_A 8 ESTSKIVLVTGGAGYIGSHTVVELIEN--GYDCVVADNLSNSTYDSVARLEVL-----------------TKHHIPFYEV 68 (699)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCSSCCTHHHHHHHHH-----------------HTSCCCEEEC
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHC--cCEEEEEECCCcchHHHHHHHhhc-----------------cCCceEEEEc
Confidence 357899999999999999999999998 678999999754321 11222211 1257889999
Q ss_pred ecCCCCCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC
Q psy7542 137 DVAVPDLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK 211 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~ 211 (762)
|+++++ ++.++++ ++|+|||+||..... +.....+++|+.|+.+++++|++. ++++||++||+.+++.
T Consensus 69 Dl~d~~------~l~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~-~~~~iV~~SS~~vyg~ 141 (699)
T 1z45_A 69 DLCDRK------GLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-NVSKFVFSSSATVYGD 141 (699)
T ss_dssp CTTCHH------HHHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCC
T ss_pred CCCCHH------HHHHHHHhCCCCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEECcHHHhCC
Confidence 999865 6777777 899999999987532 234568899999999999999987 7899999999877654
Q ss_pred C------cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH---cCCCEEEEee
Q psy7542 212 E------KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME---AGMPCMILRP 282 (762)
Q Consensus 212 ~------~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~---~glpv~IvRP 282 (762)
. .+++|.....|. +.|+.||+.+|++++.++. .+++++|+||
T Consensus 142 ~~~~~~~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~ 192 (699)
T 1z45_A 142 ATRFPNMIPIPEECPLGPT-----------------------------NPYGHTKYAIENILNDLYNSDKKSWKFAILRY 192 (699)
T ss_dssp GGGSTTCCSBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEE
T ss_pred CccccccCCccccCCCCCC-----------------------------ChHHHHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 2 234454322222 7899999999999998764 3899999999
Q ss_pred eeeccCCCCCCCCCCCC--CCCchHHHHHHhcC--CeEEEee------CCCcccccccHHHHHHHHHHHhhcccC--CCC
Q psy7542 283 SIIIPIWKDPLPGWTDN--INGPTGLLIGAGKG--IIRTMYC------DYSTCADFLPVDVLVNGVLLSTWNFLS--NPG 350 (762)
Q Consensus 283 s~V~G~~~eP~pGWidn--~~gp~~li~~~~~G--~l~~i~g------d~~~~~d~VpVDdvA~aii~a~~~~~~--~~~ 350 (762)
+.|||+....+.|-.+. .......+.....+ ....+++ +++..+++|+|+|+|++++.++..... ...
T Consensus 193 ~~vyG~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~ 272 (699)
T 1z45_A 193 FNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENE 272 (699)
T ss_dssp CEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTC
T ss_pred ccccCCCcccccccccccchhHHHHHHHHHHhcCCCceEEeCCcccCCCCCeeEeeEEHHHHHHHHHHHHhhhhcccccc
Confidence 99999864322221000 01112233333333 2223444 678889999999999999998875310 001
Q ss_pred CCceEEEecCCCCCcccHHHHHHHHHHhhccCCCCccccccC--------Ccc-cc-ccCCCchhhHHHHHHhhhhhhhc
Q psy7542 351 NTMRVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYP--------GGA-MT-NRGYEPVLKRVHNRIKKGFDIFE 420 (762)
Q Consensus 351 ~~~~iyNi~s~~~~piT~~el~~~i~~~~G~~~P~~~~~w~p--------~~~-~~-~lG~kP~l~~l~~ki~~~~~~l~ 420 (762)
..+++||++++ +++|+.|+++.+.+.+|.+.|.......+ ... .. .+||+|.. .+.+.+.+.++
T Consensus 273 ~~~~~yni~~~--~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~-~l~egl~~~~~--- 346 (699)
T 1z45_A 273 GLCREWNLGSG--KGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTEL-QVEDSCKDLWK--- 346 (699)
T ss_dssp CEEEEEEESCS--CCEEHHHHHHHHHHHHTCCCCC---------CCCCCBCCHHHHHHTCCCCCC-CHHHHHHHHHH---
T ss_pred CCceEEEECCC--CCCcHHHHHHHHHHHhCCCCCceecCCCCCccccccCCHHHHHHhcCCCCCC-CHHHHHHHHHH---
Confidence 13579999998 88999999999999998766543211110 000 11 18999987 78888777554
Q ss_pred ccccCceeeecHH
Q psy7542 421 YYTKNSWSFKNEN 433 (762)
Q Consensus 421 ~f~~~~w~Fd~~n 433 (762)
||..+.+.|...+
T Consensus 347 w~~~~~~~~~~~~ 359 (699)
T 1z45_A 347 WTTENPFGYQLRG 359 (699)
T ss_dssp HHHHCTTCSCCTT
T ss_pred HHHhCCcchhhhh
Confidence 4444555555544
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=262.91 Aligned_cols=275 Identities=16% Similarity=0.158 Sum_probs=202.6
Q ss_pred hhccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 56 SATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 56 ~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
++.+++|+|||||||||||++|+++|++. +.+|++++|....... . .....+++++.
T Consensus 15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~------~---------------~~~l~~v~~~~ 71 (330)
T 2pzm_A 15 VPRGSHMRILITGGAGCLGSNLIEHWLPQ--GHEILVIDNFATGKRE------V---------------LPPVAGLSVIE 71 (330)
T ss_dssp CSTTTCCEEEEETTTSHHHHHHHHHHGGG--TCEEEEEECCSSSCGG------G---------------SCSCTTEEEEE
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCCccchh------h---------------hhccCCceEEE
Confidence 34568999999999999999999999998 6789999996543210 0 01125789999
Q ss_pred eecCCCCCCCCHHHHHhhcC--CccEEEEcccccCcc--ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC
Q psy7542 136 GDVAVPDLGISAEDRQMLSE--TIHIVYHIAATVRFD--DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK 211 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l~~--~vDiViH~AA~v~f~--~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~ 211 (762)
+|+++++ ++.++++ ++|+|||+||..... +.+. +++|+.|+.+++++|.+. ++++|||+||..+++.
T Consensus 72 ~Dl~d~~------~~~~~~~~~~~D~vih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~-~~~~iV~~SS~~~~~~ 142 (330)
T 2pzm_A 72 GSVTDAG------LLERAFDSFKPTHVVHSAAAYKDPDDWAED--AATNVQGSINVAKAASKA-GVKRLLNFQTALCYGR 142 (330)
T ss_dssp CCTTCHH------HHHHHHHHHCCSEEEECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHH-TCSEEEEEEEGGGGCS
T ss_pred eeCCCHH------HHHHHHhhcCCCEEEECCccCCCccccChh--HHHHHHHHHHHHHHHHHc-CCCEEEEecCHHHhCC
Confidence 9999865 7888888 899999999987642 2333 899999999999999987 6889999999876654
Q ss_pred Cc----ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeecc
Q psy7542 212 EK----VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIP 287 (762)
Q Consensus 212 ~~----~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G 287 (762)
.. +++|+. .| .+.|+.||+.+|++++.+ +++++++||+++||
T Consensus 143 ~~~~~~~~~E~~--~~-----------------------------~~~Y~~sK~~~e~~~~~~---~~~~~~iR~~~v~g 188 (330)
T 2pzm_A 143 PATVPIPIDSPT--AP-----------------------------FTSYGISKTAGEAFLMMS---DVPVVSLRLANVTG 188 (330)
T ss_dssp CSSSSBCTTCCC--CC-----------------------------CSHHHHHHHHHHHHHHTC---SSCEEEEEECEEEC
T ss_pred CccCCCCcCCCC--CC-----------------------------CChHHHHHHHHHHHHHHc---CCCEEEEeeeeeEC
Confidence 31 444442 11 278999999999999887 79999999999999
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHH-HHHHHhhcccCCCCCCceEEEecCCCCCcc
Q psy7542 288 IWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVN-GVLLSTWNFLSNPGNTMRVINLTANKDFQI 366 (762)
Q Consensus 288 ~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~-aii~a~~~~~~~~~~~~~iyNi~s~~~~pi 366 (762)
+... . .....++..+..|. .+++++. ..++++++|+|+ +++.++.... +++||++++ .++
T Consensus 189 p~~~--~------~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~Dva~~a~~~~~~~~~------g~~~~v~~~--~~~ 249 (330)
T 2pzm_A 189 PRLA--I------GPIPTFYKRLKAGQ--KCFCSDT-VRDFLDMSDFLAIADLSLQEGRP------TGVFNVSTG--EGH 249 (330)
T ss_dssp TTCC--S------SHHHHHHHHHHTTC--CCCEESC-EECEEEHHHHHHHHHHHTSTTCC------CEEEEESCS--CCE
T ss_pred cCCC--C------CHHHHHHHHHHcCC--EEeCCCC-EecceeHHHHHHHHHHHHhhcCC------CCEEEeCCC--CCC
Confidence 8531 0 11123344445555 3456666 889999999999 9998886532 589999998 889
Q ss_pred cHHHHHHHHHHhhccCCCCccc-cc-------cCCccc-----cccCCCchhhHHHHHHhhhhh
Q psy7542 367 TWYDIIENGKDIARNKVPLNNV-LW-------YPGGAM-----TNRGYEPVLKRVHNRIKKGFD 417 (762)
Q Consensus 367 T~~el~~~i~~~~G~~~P~~~~-~w-------~p~~~~-----~~lG~kP~l~~l~~ki~~~~~ 417 (762)
|+.|+++.+.+.+|.+ ++... .| ...... ..+||+|.. .+.+.+.+..+
T Consensus 250 s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~d~~k~~~~~l~~lG~~p~~-~~~~~l~~~~~ 311 (330)
T 2pzm_A 250 SIKEVFDVVLDYVGAT-LAEPVPVVAPGADDVPSVVLDPSKTETEFGWKAKV-DFKDTITGQLA 311 (330)
T ss_dssp EHHHHHHHHHHHHTCC-CSSCCCEECCCTTSCSEECBCCHHHHHHHCCCCCC-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCC-CceeCCCCcchhhccCCHHHHhhchHHHcCCcccC-CHHHHHHHHHH
Confidence 9999999999999766 33211 11 111111 226888876 67777666444
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-28 Score=265.01 Aligned_cols=261 Identities=16% Similarity=0.083 Sum_probs=193.7
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++. +.+|++++|...... .++++.+.. ... .....+++++.+|++++
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~-~~~~~~l~~-----~~~-----~~~~~~~~~~~~Dl~d~ 91 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEK--GYEVHGIVRRSSSFN-TGRIEHLYK-----NPQ-----AHIEGNMKLHYGDLTDS 91 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCCSSCC-CTTTGGGC-------------------CEEEEECCTTCH
T ss_pred cEEEEECCCchHHHHHHHHHHHC--CCEEEEEECCccccc-hhhHHHHhh-----hhc-----cccCCCceEEEccCCCH
Confidence 68999999999999999999998 678999999764311 011111100 000 00124788999999986
Q ss_pred CCCCCHHHHHhhcCC--ccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCc---cEEEEEeCCcccCCC-
Q psy7542 142 DLGISAEDRQMLSET--IHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHL---QLFVYVSTAYCHPKE- 212 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~--vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~l---k~fV~vSSay~~~~~- 212 (762)
+ ++.+++++ +|+|||+||..... ++....+++|+.||.+++++|++. ++ ++|||+||..+++..
T Consensus 92 ~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~~~~iv~~SS~~~~~~~~ 164 (375)
T 1t2a_A 92 T------CLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTC-GLINSVKFYQASTSELYGKVQ 164 (375)
T ss_dssp H------HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-TCTTTCEEEEEEEGGGTCSCS
T ss_pred H------HHHHHHHhcCCCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHh-CCCccceEEEecchhhhCCCC
Confidence 5 67777765 69999999987643 445678999999999999999986 55 799999998665543
Q ss_pred -cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCC
Q psy7542 213 -KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWK 290 (762)
Q Consensus 213 -~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~ 290 (762)
.+++|+....|. +.|+.||+.+|.+++.++.. +++++++||+.+||+..
T Consensus 165 ~~~~~E~~~~~~~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~ 215 (375)
T 1t2a_A 165 EIPQKETTPFYPR-----------------------------SPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRR 215 (375)
T ss_dssp SSSBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred CCCCCccCCCCCC-----------------------------ChhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCC
Confidence 356666443332 68999999999999998776 99999999999999864
Q ss_pred CCCCCCCCCCCCchHHHHHHhcCCe-EEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHH
Q psy7542 291 DPLPGWTDNINGPTGLLIGAGKGII-RTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWY 369 (762)
Q Consensus 291 eP~pGWidn~~gp~~li~~~~~G~l-~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~ 369 (762)
.+ ++.. .....++..+..|.. ....++++..+++++|+|+|++++.++.... .++||++++ +++|+.
T Consensus 216 ~~--~~~~--~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~~------~~~~ni~~~--~~~s~~ 283 (375)
T 1t2a_A 216 GA--NFVT--RKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDE------PEDFVIATG--EVHSVR 283 (375)
T ss_dssp CT--TSHH--HHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHHHHHHSSS------CCCEEECCS--CCEEHH
T ss_pred CC--Ccch--HHHHHHHHHHHcCCCceeEeCCCCceeeeEEHHHHHHHHHHHHhcCC------CceEEEeCC--CcccHH
Confidence 31 1100 001223344455643 3457888999999999999999999987643 368999998 889999
Q ss_pred HHHHHHHHhhccCC
Q psy7542 370 DIIENGKDIARNKV 383 (762)
Q Consensus 370 el~~~i~~~~G~~~ 383 (762)
|+++.+.+.+|.+.
T Consensus 284 e~~~~i~~~~g~~~ 297 (375)
T 1t2a_A 284 EFVEKSFLHIGKTI 297 (375)
T ss_dssp HHHHHHHHHTTCCE
T ss_pred HHHHHHHHHhCCCc
Confidence 99999999997653
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=261.38 Aligned_cols=293 Identities=17% Similarity=0.228 Sum_probs=187.6
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeC-CCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLR-PKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR-~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
||+|||||||||||++|+++|++. +.+|++++| ........+.+.++ +....+++++.+|++
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~Dl~ 63 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLEN--GYSVNTTIRADPERKRDVSFLTNL---------------PGASEKLHFFNADLS 63 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT--TCEEEEECCCC----CCCHHHHTS---------------TTHHHHEEECCCCTT
T ss_pred CCEEEEECChhHHHHHHHHHHHHC--CCEEEEEEeCCccchhHHHHHHhh---------------hccCCceEEEecCCC
Confidence 589999999999999999999998 678899998 43210000111110 001136788999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCcc--ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC----Cc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFD--DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK----EK 213 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~--~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~----~~ 213 (762)
+++ ++..+++++|+|||+|+.+.+. .+.+..+++|+.||.+++++|++..++++|||+||..+... ..
T Consensus 64 d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~ 137 (322)
T 2p4h_X 64 NPD------SFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKD 137 (322)
T ss_dssp CGG------GGHHHHTTCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCS
T ss_pred CHH------HHHHHHcCCCEEEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCe
Confidence 876 6888889999999999876433 22345889999999999999988646789999999854321 12
Q ss_pred ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCC-c-hhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCC
Q psy7542 214 VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFP-N-GYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWK 290 (762)
Q Consensus 214 ~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~p-n-~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~ 290 (762)
+++|+.... .. ...+. .| + .|+.||+++|+++.++++. |++++++||+.|+|+..
T Consensus 138 ~~~e~~~~~---~~---------------~~~~~----~p~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~ 195 (322)
T 2p4h_X 138 VLDESDWSD---VD---------------LLRSV----KPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFV 195 (322)
T ss_dssp EECTTCCCC---HH---------------HHHHH----CCTTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCC
T ss_pred ecCCccccc---hh---------------hhccc----CcccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCC
Confidence 344432110 00 00010 11 2 6999999999999988764 99999999999999864
Q ss_pred CCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHH
Q psy7542 291 DPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYD 370 (762)
Q Consensus 291 eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~e 370 (762)
.+. .......+.....|....+ ++ ...++++++|+|++++.++..... .+ .|| +++ .++|+.|
T Consensus 196 ~~~------~~~~~~~~~~~~~g~~~~~-~~--~~~~~i~v~Dva~a~~~~~~~~~~----~g-~~~-~~~--~~~s~~e 258 (322)
T 2p4h_X 196 CPK------LPDSIEKALVLVLGKKEQI-GV--TRFHMVHVDDVARAHIYLLENSVP----GG-RYN-CSP--FIVPIEE 258 (322)
T ss_dssp SSS------CCHHHHHHTHHHHSCGGGC-CE--EEEEEEEHHHHHHHHHHHHHSCCC----CE-EEE-CCC--EEEEHHH
T ss_pred CCC------CCchHHHHHHHHhCCCccC-cC--CCcCEEEHHHHHHHHHHHhhCcCC----CC-CEE-EcC--CCCCHHH
Confidence 321 1100111112233332111 11 234899999999999999876432 24 598 555 6899999
Q ss_pred HHHHHHHhhccCCCCcccc-c--cC---Ccc-----ccccCCCchhhHHHHHHhhhhh
Q psy7542 371 IIENGKDIARNKVPLNNVL-W--YP---GGA-----MTNRGYEPVLKRVHNRIKKGFD 417 (762)
Q Consensus 371 l~~~i~~~~G~~~P~~~~~-w--~p---~~~-----~~~lG~kP~l~~l~~ki~~~~~ 417 (762)
+++.+.+..+ ..+++... + .+ ... ...+||+|++ .+.+.+.+..+
T Consensus 259 ~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~-~~~~~l~~~~~ 314 (322)
T 2p4h_X 259 MSQLLSAKYP-EYQILTVDELKEIKGARLPDLNTKKLVDAGFDFKY-TIEDMFDDAIQ 314 (322)
T ss_dssp HHHHHHHHCT-TSCCCCTTTTTTCCCEECCEECCHHHHHTTCCCCC-CHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCCCCCCccccCCCCCcceecccHHHHHhCCccCC-CHHHHHHHHHH
Confidence 9999988762 22221110 0 00 000 1117888887 67777766444
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.7e-28 Score=259.32 Aligned_cols=255 Identities=17% Similarity=0.187 Sum_probs=194.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCC-------cEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCe
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCEN-------VKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKV 131 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~-------v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV 131 (762)
+++|+|||||||||||++|+++|++. + .+|++++|...... .....++
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~--g~~~~r~~~~V~~~~r~~~~~~-----------------------~~~~~~~ 66 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKD--GSLGGKPVEKFTLIDVFQPEAP-----------------------AGFSGAV 66 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHH--CEETTEEEEEEEEEESSCCCCC-----------------------TTCCSEE
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhc--CCcccCCCceEEEEEccCCccc-----------------------cccCCce
Confidence 57899999999999999999999999 5 68999999754321 0013578
Q ss_pred EEEEeecCCCCCCCCHHHHHhhc-CCccEEEEcccccCc--cccHHHHHHHhHHHHHHHHHHHHHcC----CccEEEEEe
Q psy7542 132 IPINGDVAVPDLGISAEDRQMLS-ETIHIVYHIAATVRF--DDYMQTYVFLNTRGTRDMLNLSKQMI----HLQLFVYVS 204 (762)
Q Consensus 132 ~~V~GDl~~~~LGLs~~~l~~l~-~~vDiViH~AA~v~f--~~~l~~~~~~NV~GT~~LLelA~~~~----~lk~fV~vS 204 (762)
+++.+|+++++ ++..++ .++|+|||+||.... .+.+...+++|+.||.+++++|++.+ .+++||++|
T Consensus 67 ~~~~~Dl~d~~------~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~S 140 (342)
T 2hrz_A 67 DARAADLSAPG------EAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTS 140 (342)
T ss_dssp EEEECCTTSTT------HHHHHHHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred eEEEcCCCCHH------HHHHHHhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeC
Confidence 89999999877 677777 589999999997642 24566789999999999999999873 378999999
Q ss_pred CCcccCCC--cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEe
Q psy7542 205 TAYCHPKE--KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILR 281 (762)
Q Consensus 205 Say~~~~~--~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvR 281 (762)
|..+++.. .+++|+..+.|. +.|+.||+.+|.++.+++.. +++.+++|
T Consensus 141 S~~~~~~~~~~~~~E~~~~~~~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir 191 (342)
T 2hrz_A 141 SIAVFGAPLPYPIPDEFHTTPL-----------------------------TSYGTQKAICELLLSDYSRRGFFDGIGIR 191 (342)
T ss_dssp EGGGCCSSCCSSBCTTCCCCCS-----------------------------SHHHHHHHHHHHHHHHHHHTTSCEEEEEE
T ss_pred chHhhCCCCCCCcCCCCCCCCc-----------------------------chHHHHHHHHHHHHHHHHHhcCCCceeEE
Confidence 99766543 356666443332 68999999999999998876 79999999
Q ss_pred eeeeccCCCCCCCCCCCCCCC--chHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 282 PSIIIPIWKDPLPGWTDNING--PTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 282 Ps~V~G~~~eP~pGWidn~~g--p~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
++.|+|. ||+.++... ...++.....|....++++++...++++++|+|++++.++...... ...+++||++
T Consensus 192 ~~~v~g~-----pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~~~~~~~~~~~~~-~~~~~~~ni~ 265 (342)
T 2hrz_A 192 LPTICIR-----PGKPNAAASGFFSNILREPLVGQEAVLPVPESIRHWHASPRSAVGFLIHGAMIDVEK-VGPRRNLSMP 265 (342)
T ss_dssp ECEETTC-----CSSCCCSGGGHHHHHHHHHHTTCCEEECSCTTCEEEEECHHHHHHHHHHHHHSCHHH-HCSCCEEECC
T ss_pred eeeEEec-----CCCCcchhHHHHHHHHHHHhcCCCeeccCCCccceeeEehHHHHHHHHHHHhccccc-cCCccEEEcC
Confidence 9999983 232221111 1234455566766666666677788999999999999998765310 0025799995
Q ss_pred CCCCCcccHHHHHHHHHHhhccC
Q psy7542 360 ANKDFQITWYDIIENGKDIARNK 382 (762)
Q Consensus 360 s~~~~piT~~el~~~i~~~~G~~ 382 (762)
+ .++|+.|+++.+.+.+|.+
T Consensus 266 -g--~~~s~~e~~~~i~~~~g~~ 285 (342)
T 2hrz_A 266 -G--LSATVGEQIEALRKVAGEK 285 (342)
T ss_dssp -C--EEEEHHHHHHHHHHHHCHH
T ss_pred -C--CCCCHHHHHHHHHHHcCcc
Confidence 4 5799999999999998654
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=261.00 Aligned_cols=274 Identities=16% Similarity=0.121 Sum_probs=193.9
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEE-E
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPI-N 135 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V-~ 135 (762)
.++++|+|||||||||||++|+++|++. +.+|++++|.... .+++.+.+. . ....+++++ .
T Consensus 7 ~~~~~~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~---~~~~~~~~~--------~-----~~~~~~~~~~~ 68 (342)
T 1y1p_A 7 VLPEGSLVLVTGANGFVASHVVEQLLEH--GYKVRGTARSASK---LANLQKRWD--------A-----KYPGRFETAVV 68 (342)
T ss_dssp SSCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHH---HHHHHHHHH--------H-----HSTTTEEEEEC
T ss_pred cCCCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCccc---HHHHHHHhh--------c-----cCCCceEEEEe
Confidence 4568999999999999999999999998 6789999996421 122222110 0 012578888 8
Q ss_pred eecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC---
Q psy7542 136 GDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--- 212 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--- 212 (762)
+|+++++ ++.++++++|+|||+||......+....+++|+.||.+++++|.+..++++|||+||.+++...
T Consensus 69 ~D~~d~~------~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~ 142 (342)
T 1y1p_A 69 EDMLKQG------AYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPN 142 (342)
T ss_dssp SCTTSTT------TTTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTT
T ss_pred cCCcChH------HHHHHHcCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCC
Confidence 9999876 5777888999999999988776677889999999999999999854478999999998665321
Q ss_pred ---cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhh--cCCCchhHhhhHHHHHHHHHHHHc---CCCEEEEeeee
Q psy7542 213 ---KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELL--QDFPNGYAYTKCLCEGVVTEYMEA---GMPCMILRPSI 284 (762)
Q Consensus 213 ---~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~--~~~pn~Y~~SK~~aE~lv~~~~~~---glpv~IvRPs~ 284 (762)
.+++|+.+.. . .......+... ....+.|+.||+.+|++++.++.. +++++++||+.
T Consensus 143 ~~~~~~~E~~~~~----~-----------~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~ 207 (342)
T 1y1p_A 143 VEGIYLDEKSWNL----E-----------SIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNY 207 (342)
T ss_dssp CCCCEECTTCCCH----H-----------HHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESE
T ss_pred CCCcccCccccCc----h-----------hhhhhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCc
Confidence 3455543210 0 00000000000 001168999999999999988764 78899999999
Q ss_pred eccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCC
Q psy7542 285 IIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDF 364 (762)
Q Consensus 285 V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~ 364 (762)
|+|+...+... . .....++..+..|....+.+++ ...++++++|+|++++.++..... .+..+ ++++ .
T Consensus 208 v~g~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~Dva~a~~~~~~~~~~----~g~~~-~~~g--~ 275 (342)
T 1y1p_A 208 TIGTIFDPETQ---S-GSTSGWMMSLFNGEVSPALALM-PPQYYVSAVDIGLLHLGCLVLPQI----ERRRV-YGTA--G 275 (342)
T ss_dssp EECCCSCTTTC---C-CHHHHHHHHHHTTCCCHHHHTC-CSEEEEEHHHHHHHHHHHHHCTTC----CSCEE-EECC--E
T ss_pred eECCCCCCCCC---C-ccHHHHHHHHHcCCCccccccC-CcCCEeEHHHHHHHHHHHHcCccc----CCceE-EEeC--C
Confidence 99997653210 0 1223455566666554444444 678999999999999999886543 23444 4455 6
Q ss_pred cccHHHHHHHHHHhhcc
Q psy7542 365 QITWYDIIENGKDIARN 381 (762)
Q Consensus 365 piT~~el~~~i~~~~G~ 381 (762)
++|+.|+++.+.+.+|.
T Consensus 276 ~~s~~e~~~~i~~~~~~ 292 (342)
T 1y1p_A 276 TFDWNTVLATFRKLYPS 292 (342)
T ss_dssp EECHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHCCC
Confidence 79999999999999864
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-28 Score=255.33 Aligned_cols=224 Identities=17% Similarity=0.133 Sum_probs=178.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
..++|||||||||||++|+++|++. +.+|++++|. .+|++
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~--------------------------------------~~Dl~ 50 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGK--NVEVIPTDVQ--------------------------------------DLDIT 50 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTS--SEEEEEECTT--------------------------------------TCCTT
T ss_pred ccceEEEECCCChHHHHHHHHHHhC--CCeEEeccCc--------------------------------------cCCCC
Confidence 4689999999999999999999998 6789999884 25777
Q ss_pred CCCCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--
Q psy7542 140 VPDLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE-- 212 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~-- 212 (762)
+++ ++.++++ ++|+|||+||..... .+....+++|+.|+.+++++|++. ++ +|||+||..+++..
T Consensus 51 d~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~-~iv~~SS~~v~~~~~~ 122 (292)
T 1vl0_A 51 NVL------AVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSV-GA-EIVQISTDYVFDGEAK 122 (292)
T ss_dssp CHH------HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH-TC-EEEEEEEGGGSCSCCS
T ss_pred CHH------HHHHHHHhcCCCEEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEechHHeECCCCC
Confidence 644 6777777 799999999987642 456778999999999999999987 56 99999998665543
Q ss_pred cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCC
Q psy7542 213 KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDP 292 (762)
Q Consensus 213 ~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP 292 (762)
.+++|+..+.|. +.|+.||+.+|++++.+ +.+++++||+.|||+ ..
T Consensus 123 ~~~~E~~~~~~~-----------------------------~~Y~~sK~~~E~~~~~~---~~~~~~lR~~~v~G~-~~- 168 (292)
T 1vl0_A 123 EPITEFDEVNPQ-----------------------------SAYGKTKLEGENFVKAL---NPKYYIVRTAWLYGD-GN- 168 (292)
T ss_dssp SCBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHH---CSSEEEEEECSEESS-SS-
T ss_pred CCCCCCCCCCCc-----------------------------cHHHHHHHHHHHHHHhh---CCCeEEEeeeeeeCC-Cc-
Confidence 356666444333 68999999999999987 458999999999998 22
Q ss_pred CCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHH
Q psy7542 293 LPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDII 372 (762)
Q Consensus 293 ~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~ 372 (762)
+ ....++..+..|....+.+ +...++++++|+|++++.++... . +++||++++ .++|+.|++
T Consensus 169 --~------~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~~-~-----~~~~~i~~~--~~~s~~e~~ 230 (292)
T 1vl0_A 169 --N------FVKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDEK-N-----YGTFHCTCK--GICSWYDFA 230 (292)
T ss_dssp --C------HHHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHHT-C-----CEEEECCCB--SCEEHHHHH
T ss_pred --C------hHHHHHHHHhcCCcEEeec--CeeeCCccHHHHHHHHHHHHhcC-C-----CcEEEecCC--CCccHHHHH
Confidence 1 1223444455566554554 47889999999999999998875 3 589999998 889999999
Q ss_pred HHHHHhhccCC
Q psy7542 373 ENGKDIARNKV 383 (762)
Q Consensus 373 ~~i~~~~G~~~ 383 (762)
+.+.+.+|.+.
T Consensus 231 ~~i~~~~g~~~ 241 (292)
T 1vl0_A 231 VEIFRLTGIDV 241 (292)
T ss_dssp HHHHHHHCCCC
T ss_pred HHHHHHhCCCC
Confidence 99999997653
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-28 Score=262.83 Aligned_cols=261 Identities=17% Similarity=0.104 Sum_probs=190.4
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|+|||||||||||++|+++|++. +.+|++++|..... ..++++++... . .....+++++.+|+++
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~-~~~~~~~~~~~---------~--~~~~~~~~~~~~Dl~d 66 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEK--GYEVHGIKRRASSF-NTERVDHIYQD---------P--HTCNPKFHLHYGDLSD 66 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEECC---------------------------------CCEEECCCCSSC
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEEECCCccc-chHHHHHHhhc---------c--ccCCCceEEEECCCCC
Confidence 478999999999999999999998 67899999975431 11222222110 0 0012578899999998
Q ss_pred CCCCCCHHHHHhhcCC--ccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCc---cEEEEEeCCcccCCC
Q psy7542 141 PDLGISAEDRQMLSET--IHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHL---QLFVYVSTAYCHPKE 212 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~--vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~l---k~fV~vSSay~~~~~ 212 (762)
++ ++.+++++ +|+|||+||..... +.....+++|+.||.+++++|++. ++ ++||++||..+++..
T Consensus 67 ~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~~~iv~~SS~~v~g~~ 139 (372)
T 1db3_A 67 TS------NLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFL-GLEKKTRFYQASTSELYGLV 139 (372)
T ss_dssp HH------HHHHHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHT-TCTTTCEEEEEEEGGGGTTC
T ss_pred HH------HHHHHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHh-CCCCCcEEEEeCChhhhCCC
Confidence 65 67777765 79999999976532 456678899999999999999987 56 799999998665543
Q ss_pred --cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCC
Q psy7542 213 --KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIW 289 (762)
Q Consensus 213 --~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~ 289 (762)
.+++|+....|. +.|+.||+.+|.+++.++.. +++++++|++.+||+.
T Consensus 140 ~~~~~~E~~~~~~~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~ 190 (372)
T 1db3_A 140 QEIPQKETTPFYPR-----------------------------SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPR 190 (372)
T ss_dssp CSSSBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred CCCCCCccCCCCCC-----------------------------ChHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCC
Confidence 256665443332 68999999999999998776 9999999999999986
Q ss_pred CCCCCCCCCCCCCchHHHHHHhcCCe-EEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccH
Q psy7542 290 KDPLPGWTDNINGPTGLLIGAGKGII-RTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITW 368 (762)
Q Consensus 290 ~eP~pGWidn~~gp~~li~~~~~G~l-~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~ 368 (762)
..+ ++.. .....++..+..|.. ....++++..+++++|+|+|++++.++.... +++||++++ +++|+
T Consensus 191 ~~~--~~~~--~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~~------~~~~ni~~~--~~~s~ 258 (372)
T 1db3_A 191 RGE--TFVT--RKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQ------PEDFVIATG--VQYSV 258 (372)
T ss_dssp SCT--TSHH--HHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTTSSSS------CCCEEECCC--CCEEH
T ss_pred CCC--cchh--hHHHHHHHHHHcCCCCceeecCCCceeeeeEHHHHHHHHHHHHhcCC------CceEEEcCC--CceeH
Confidence 431 1100 001223444556653 3457888999999999999999999886542 378999998 88999
Q ss_pred HHHHHHHHHhhccCC
Q psy7542 369 YDIIENGKDIARNKV 383 (762)
Q Consensus 369 ~el~~~i~~~~G~~~ 383 (762)
.|+++.+.+.+|.+.
T Consensus 259 ~e~~~~i~~~~g~~~ 273 (372)
T 1db3_A 259 RQFVEMAAAQLGIKL 273 (372)
T ss_dssp HHHHHHHHHTTTEEE
T ss_pred HHHHHHHHHHhCCCc
Confidence 999999999987643
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=262.63 Aligned_cols=296 Identities=15% Similarity=0.171 Sum_probs=191.0
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|+|||||||||||++|+++|++. +.+|++++|..........+.++ + ...+++++.+|+++
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~--G~~V~~~~r~~~~~~~~~~~~~~---------------~-~~~~~~~~~~Dl~d 70 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQK--GYAVNTTVRDPDNQKKVSHLLEL---------------Q-ELGDLKIFRADLTD 70 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHT--TCEEEEEESCTTCTTTTHHHHHH---------------G-GGSCEEEEECCTTT
T ss_pred CCEEEEECCchHHHHHHHHHHHHC--CCEEEEEEcCcchhhhHHHHHhc---------------C-CCCcEEEEecCCCC
Confidence 689999999999999999999998 67888889875432111111111 1 12478899999999
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCcc--ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCccc------CCC
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFD--DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCH------PKE 212 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~--~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~------~~~ 212 (762)
++ ++.++++++|+|||+||...+. .+.++.+++|+.||.+++++|++.+++++|||+||+.+. ...
T Consensus 71 ~~------~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~ 144 (338)
T 2rh8_A 71 EL------SFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTG 144 (338)
T ss_dssp SS------SSHHHHTTCSEEEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSC
T ss_pred hH------HHHHHHcCCCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCC
Confidence 77 5777888999999999976543 222348899999999999999987448999999997421 111
Q ss_pred cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCC-chhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCC
Q psy7542 213 KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFP-NGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWK 290 (762)
Q Consensus 213 ~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~p-n~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~ 290 (762)
.+++|+....+. + ..+. ..+ ..|+.||+++|+++.++++. |++++++||+.|||+..
T Consensus 145 ~~~~E~~~~~~~-~-----------------~~~~---~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~ 203 (338)
T 2rh8_A 145 LVVDEKNWTDIE-F-----------------LTSA---KPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSL 203 (338)
T ss_dssp CCCCTTTTTCC----------------------------CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCS
T ss_pred cccChhhccchh-h-----------------cccc---CCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCC
Confidence 245665322110 0 0000 001 25999999999999988764 99999999999999965
Q ss_pred CCCCCCCCCCCCchHHHHHHhcCCeEEEeeC------CCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCC
Q psy7542 291 DPLPGWTDNINGPTGLLIGAGKGIIRTMYCD------YSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDF 364 (762)
Q Consensus 291 eP~pGWidn~~gp~~li~~~~~G~l~~i~gd------~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~ 364 (762)
.+. .......+.....|... ..++ +....++++|+|+|++++.++..... .+.||++++
T Consensus 204 ~~~------~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~-----~~~~~~~~~--- 268 (338)
T 2rh8_A 204 TSD------VPSSIGLAMSLITGNEF-LINGMKGMQMLSGSVSIAHVEDVCRAHIFVAEKESA-----SGRYICCAA--- 268 (338)
T ss_dssp SSS------CCHHHHHHHHHHHTCHH-HHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHCTTC-----CEEEEECSE---
T ss_pred CCC------CCchHHHHHHHHcCCcc-ccccccccccccCcccEEEHHHHHHHHHHHHcCCCc-----CCcEEEecC---
Confidence 421 11001111112233211 1111 11234899999999999999876433 357888754
Q ss_pred cccHHHHHHHHHHhhcc-CCCCcccc------ccCC-ccccccCCCchhhHHHHHHhhhhh
Q psy7542 365 QITWYDIIENGKDIARN-KVPLNNVL------WYPG-GAMTNRGYEPVLKRVHNRIKKGFD 417 (762)
Q Consensus 365 piT~~el~~~i~~~~G~-~~P~~~~~------w~p~-~~~~~lG~kP~l~~l~~ki~~~~~ 417 (762)
.+|+.|+++.+.+..+. ..|..... +..+ .....+||+|++ .+.+.+.+..+
T Consensus 269 ~~s~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~-~l~~gl~~~~~ 328 (338)
T 2rh8_A 269 NTSVPELAKFLSKRYPQYKVPTDFGDFPPKSKLIISSEKLVKEGFSFKY-GIEEIYDESVE 328 (338)
T ss_dssp EECHHHHHHHHHHHCTTSCCCCCCTTSCSSCSCCCCCHHHHHHTCCCSC-CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCCCCcCcceeechHHHHHhCCCCCC-CHHHHHHHHHH
Confidence 58999999999988742 22221100 0000 001117999987 77777777554
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-28 Score=253.70 Aligned_cols=225 Identities=15% Similarity=0.110 Sum_probs=177.2
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
.|+|||||| ||||++|+++|++. +.+|++++|..... +.+. ..+++++.+|+++
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~--g~~V~~~~r~~~~~---~~~~--------------------~~~~~~~~~D~~d 58 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQ--GWRIIGTSRNPDQM---EAIR--------------------ASGAEPLLWPGEE 58 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGG--TCEEEEEESCGGGH---HHHH--------------------HTTEEEEESSSSC
T ss_pred cCcEEEECC-cHHHHHHHHHHHHC--CCEEEEEEcChhhh---hhHh--------------------hCCCeEEEecccc
Confidence 378999998 99999999999998 67899999975321 1111 1478999999987
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEEeCCcccCCC--ccccc
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYVSTAYCHPKE--KVLEE 217 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~vSSay~~~~~--~~i~E 217 (762)
.+ ++++|+|||+|+......+ .+.+++++|++. .++++|||+||+.+++.. .+++|
T Consensus 59 ~~-----------~~~~d~vi~~a~~~~~~~~----------~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E 117 (286)
T 3ius_A 59 PS-----------LDGVTHLLISTAPDSGGDP----------VLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDE 117 (286)
T ss_dssp CC-----------CTTCCEEEECCCCBTTBCH----------HHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECT
T ss_pred cc-----------cCCCCEEEECCCccccccH----------HHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCC
Confidence 22 5789999999998765432 257889999884 378999999998665543 35777
Q ss_pred ccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCC
Q psy7542 218 KTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWT 297 (762)
Q Consensus 218 ~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWi 297 (762)
+....|. +.|+.+|+.+|+++..+ . +++++|+||+.|||+...++
T Consensus 118 ~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~-~-~~~~~ilRp~~v~G~~~~~~---- 162 (286)
T 3ius_A 118 TTPLTPT-----------------------------AARGRWRVMAEQQWQAV-P-NLPLHVFRLAGIYGPGRGPF---- 162 (286)
T ss_dssp TSCCCCC-----------------------------SHHHHHHHHHHHHHHHS-T-TCCEEEEEECEEEBTTBSSS----
T ss_pred CCCCCCC-----------------------------CHHHHHHHHHHHHHHhh-c-CCCEEEEeccceECCCchHH----
Confidence 6555443 68999999999999988 3 89999999999999865432
Q ss_pred CCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHH
Q psy7542 298 DNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKD 377 (762)
Q Consensus 298 dn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~ 377 (762)
..+..|....+.++ +..+++|+++|+|++++.++.+... +++||++++ +++|+.|+++.+.+
T Consensus 163 ----------~~~~~~~~~~~~~~-~~~~~~i~v~Dva~a~~~~~~~~~~-----g~~~~i~~~--~~~s~~e~~~~i~~ 224 (286)
T 3ius_A 163 ----------SKLGKGGIRRIIKP-GQVFSRIHVEDIAQVLAASMARPDP-----GAVYNVCDD--EPVPPQDVIAYAAE 224 (286)
T ss_dssp ----------TTSSSSCCCEEECT-TCCBCEEEHHHHHHHHHHHHHSCCT-----TCEEEECCS--CCBCHHHHHHHHHH
T ss_pred ----------HHHhcCCccccCCC-CcccceEEHHHHHHHHHHHHhCCCC-----CCEEEEeCC--CCccHHHHHHHHHH
Confidence 12334554455544 5789999999999999999987664 679999998 88999999999999
Q ss_pred hhccCCCC
Q psy7542 378 IARNKVPL 385 (762)
Q Consensus 378 ~~G~~~P~ 385 (762)
.+|.+.|.
T Consensus 225 ~~g~~~~~ 232 (286)
T 3ius_A 225 LQGLPLPP 232 (286)
T ss_dssp HHTCCCCC
T ss_pred HcCCCCCc
Confidence 99876554
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-28 Score=256.91 Aligned_cols=247 Identities=20% Similarity=0.152 Sum_probs=185.9
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPD 142 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~ 142 (762)
+|||||||||||++|+++|++...+.+|+++.|..... .++.++.+|+++++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~----------------------------~~~~~~~~D~~d~~ 52 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDT----------------------------GGIKFITLDVSNRD 52 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCC----------------------------TTCCEEECCTTCHH
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccc----------------------------cCceEEEecCCCHH
Confidence 48999999999999999999872245788898864321 14678899999865
Q ss_pred CCCCHHHHHhhcC--CccEEEEcccccCc--cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC---ccc
Q psy7542 143 LGISAEDRQMLSE--TIHIVYHIAATVRF--DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE---KVL 215 (762)
Q Consensus 143 LGLs~~~l~~l~~--~vDiViH~AA~v~f--~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~---~~i 215 (762)
++.++++ ++|+|||+||.... .......+++|+.||.+++++|++. ++++|||+||..+++.. .++
T Consensus 53 ------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~~~~~~~ 125 (317)
T 3ajr_A 53 ------EIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQH-RVEKVVIPSTIGVFGPETPKNKV 125 (317)
T ss_dssp ------HHHHHHHHTTCCEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGCCTTSCSSSB
T ss_pred ------HHHHHHhhcCCcEEEECCcccCCccccChHHHhhhhhHHHHHHHHHHHHc-CCCEEEEecCHHHhCCCCCCCCc
Confidence 6777776 89999999997542 2345678999999999999999987 78999999999776543 234
Q ss_pred ccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCCC
Q psy7542 216 EEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLP 294 (762)
Q Consensus 216 ~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~p 294 (762)
+|+....|. +.|+.||+.+|+++..++.. |++++++||+.+||+...|..
T Consensus 126 ~e~~~~~p~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~ 176 (317)
T 3ajr_A 126 PSITITRPR-----------------------------TMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPTA 176 (317)
T ss_dssp CSSSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSSSCCCS
T ss_pred cccccCCCC-----------------------------chHHHHHHHHHHHHHHHHHhcCCeEEEEecCcEeccCCCCCC
Confidence 554333232 78999999999999988765 999999999999998755432
Q ss_pred CCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHH
Q psy7542 295 GWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIEN 374 (762)
Q Consensus 295 GWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~ 374 (762)
++.+ .....+.....+.....+++++..+++++++|+|++++.++..+... ...+++||+++ .++|+.|+++.
T Consensus 177 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~-~~~g~~~~i~~---~~~s~~e~~~~ 249 (317)
T 3ajr_A 177 GTTD---YAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEADRDK-LVLRNGYNVTA---YTFTPSELYSK 249 (317)
T ss_dssp CSST---HHHHHHHHHHTTCCEEECSCTTCCEEEEEHHHHHHHHHHHHHCCGGG-CSSCSCEECCS---EEECHHHHHHH
T ss_pred cchh---HHHHHHHHHHhCCCceeecCccceeeeeEHHHHHHHHHHHHhCCccc-cccCceEecCC---ccccHHHHHHH
Confidence 2111 11122333333333445677888999999999999999998865421 00247999985 46999999999
Q ss_pred HHHhhc
Q psy7542 375 GKDIAR 380 (762)
Q Consensus 375 i~~~~G 380 (762)
+.+..|
T Consensus 250 i~~~~~ 255 (317)
T 3ajr_A 250 IKERIP 255 (317)
T ss_dssp HHTTCC
T ss_pred HHHHCC
Confidence 999885
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=254.64 Aligned_cols=240 Identities=16% Similarity=0.128 Sum_probs=160.9
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|+|||||||||||++|+++|++. +.+|++++|.... .+ ++.+|+++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~-----------------------------~~--~~~~Dl~d 48 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQN--NWHAVGCGFRRAR-----------------------------PK--FEQVNLLD 48 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTT--TCEEEEEC----------------------------------------------
T ss_pred CCeEEEECCCcHHHHHHHHHHHhC--CCeEEEEccCCCC-----------------------------CC--eEEecCCC
Confidence 579999999999999999999998 6789999985321 12 56889998
Q ss_pred CCCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC-Ccc
Q psy7542 141 PDLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK-EKV 214 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~-~~~ 214 (762)
++ ++.++++ ++|+|||+||..... .++...+++|+.|+.+++++|++. +. +|||+||..+++. ..+
T Consensus 49 ~~------~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~v~~~~~~~ 120 (315)
T 2ydy_A 49 SN------AVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAV-GA-FLIYISSDYVFDGTNPP 120 (315)
T ss_dssp ---------CHHHHHHHCCSEEEECC-------------------CHHHHHHHHHHHHH-TC-EEEEEEEGGGSCSSSCS
T ss_pred HH------HHHHHHHhhCCCEEEECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEchHHHcCCCCCC
Confidence 76 4566655 489999999976542 456678999999999999999987 45 8999999876654 335
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLP 294 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~p 294 (762)
++|+....|. +.|+.||+.+|++++.+ +++++++||+.|||+...+..
T Consensus 121 ~~E~~~~~~~-----------------------------~~Y~~sK~~~e~~~~~~---~~~~~~lR~~~v~G~~~~~~~ 168 (315)
T 2ydy_A 121 YREEDIPAPL-----------------------------NLYGKTKLDGEKAVLEN---NLGAAVLRIPILYGEVEKLEE 168 (315)
T ss_dssp BCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHH---CTTCEEEEECSEECSCSSGGG
T ss_pred CCCCCCCCCc-----------------------------CHHHHHHHHHHHHHHHh---CCCeEEEeeeeeeCCCCcccc
Confidence 6666443332 78999999999999987 678999999999998654211
Q ss_pred CCCCCCCCchHHHHHHh-cCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHH
Q psy7542 295 GWTDNINGPTGLLIGAG-KGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIE 373 (762)
Q Consensus 295 GWidn~~gp~~li~~~~-~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~ 373 (762)
++ ...++..+. .|....+. ++...++++++|+|++++.++.+.... ...+++||++++ .++|+.|+++
T Consensus 169 ~~------~~~~~~~~~~~~~~~~~~--~~~~~~~i~v~Dva~a~~~~~~~~~~~-~~~~~~~~i~~~--~~~s~~e~~~ 237 (315)
T 2ydy_A 169 SA------VTVMFDKVQFSNKSANMD--HWQQRFPTHVKDVATVCRQLAEKRMLD-PSIKGTFHWSGN--EQMTKYEMAC 237 (315)
T ss_dssp ST------TGGGHHHHHCCSSCEEEE--CSSBBCCEEHHHHHHHHHHHHHHHHTC-TTCCEEEECCCS--CCBCHHHHHH
T ss_pred cH------HHHHHHHHHhcCCCeeec--cCceECcEEHHHHHHHHHHHHHhhccc-cCCCCeEEEcCC--CcccHHHHHH
Confidence 11 123444444 55544333 467889999999999999988764100 013689999998 8999999999
Q ss_pred HHHHhhccCCC
Q psy7542 374 NGKDIARNKVP 384 (762)
Q Consensus 374 ~i~~~~G~~~P 384 (762)
.+.+.+|.+.+
T Consensus 238 ~i~~~~g~~~~ 248 (315)
T 2ydy_A 238 AIADAFNLPSS 248 (315)
T ss_dssp HHHHHTTCCCT
T ss_pred HHHHHhCCChh
Confidence 99999976543
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=258.22 Aligned_cols=296 Identities=15% Similarity=0.196 Sum_probs=191.6
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++++|||||||||||++|+++|++. +.+|++++|..... +++..+.+. +....+++++.+|++
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~--G~~V~~~~r~~~~~---~~~~~~~~~------------~~~~~~~~~~~~Dl~ 66 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLER--GYTVRATVRDPTNV---KKVKHLLDL------------PKAETHLTLWKADLA 66 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCTTCH---HHHHHHHTS------------TTHHHHEEEEECCTT
T ss_pred CCCEEEEECCchHHHHHHHHHHHHC--CCEEEEEECCcchh---HHHHHHHhc------------ccCCCeEEEEEcCCC
Confidence 5789999999999999999999998 67889999975421 122221110 001136889999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCcc--ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCccc-CC---Cc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFD--DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCH-PK---EK 213 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~--~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~-~~---~~ 213 (762)
+++ ++..+++++|+|||+||...+. ++....+++|+.||.+++++|++.+.+++|||+||+.+. +. ..
T Consensus 67 d~~------~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~ 140 (337)
T 2c29_D 67 DEG------SFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLP 140 (337)
T ss_dssp STT------TTHHHHTTCSEEEECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCS
T ss_pred CHH------HHHHHHcCCCEEEEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCc
Confidence 876 5778888999999999976543 233458899999999999999987448999999998532 21 12
Q ss_pred ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCC
Q psy7542 214 VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDP 292 (762)
Q Consensus 214 ~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP 292 (762)
.++|+.+. +.+ ...+. ....+.|+.||+++|+++.+++.. |++++++||+.|||+...+
T Consensus 141 ~~~E~~~~-~~~-----------------~~~~~--~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~ 200 (337)
T 2c29_D 141 VYDESCWS-DME-----------------FCRAK--KMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMS 200 (337)
T ss_dssp EECTTCCC-CHH-----------------HHHHH--CCTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCS
T ss_pred ccCcccCC-chh-----------------hhccc--CCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCC
Confidence 34554221 110 00000 011247999999999999887654 9999999999999986532
Q ss_pred CCCCCCCCCCchHHHHH--HhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHH
Q psy7542 293 LPGWTDNINGPTGLLIG--AGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYD 370 (762)
Q Consensus 293 ~pGWidn~~gp~~li~~--~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~e 370 (762)
. .+..+... ...|... ..+.. ....+++|+|+|++++.++..... .+.|++++ ..+|+.|
T Consensus 201 ~--------~~~~~~~~~~~~~g~~~-~~~~~-~~~~~i~v~Dva~a~~~~~~~~~~-----~~~~~~~~---~~~s~~e 262 (337)
T 2c29_D 201 S--------MPPSLITALSPITGNEA-HYSII-RQGQFVHLDDLCNAHIYLFENPKA-----EGRYICSS---HDCIILD 262 (337)
T ss_dssp S--------CCHHHHHHTHHHHTCGG-GHHHH-TEEEEEEHHHHHHHHHHHHHCTTC-----CEEEEECC---EEEEHHH
T ss_pred C--------CCchHHHHHHHHcCCCc-ccccc-CCCCEEEHHHHHHHHHHHhcCccc-----CceEEEeC---CCCCHHH
Confidence 1 11111111 1222211 11111 123499999999999999876433 35787655 4589999
Q ss_pred HHHHHHHhhcc-CCCCcccccc---CCc-----cccccCCCchhhHHHHHHhhhhh
Q psy7542 371 IIENGKDIARN-KVPLNNVLWY---PGG-----AMTNRGYEPVLKRVHNRIKKGFD 417 (762)
Q Consensus 371 l~~~i~~~~G~-~~P~~~~~w~---p~~-----~~~~lG~kP~l~~l~~ki~~~~~ 417 (762)
+++.+.+..+. ..|....... ... ....+||+|++ .+.+.+.+..+
T Consensus 263 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~-~l~e~l~~~~~ 317 (337)
T 2c29_D 263 LAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDLGFEFKY-SLEDMFTGAVD 317 (337)
T ss_dssp HHHHHHHHCTTSCCCSCCTTCCTTCCCCEECCHHHHHHTCCCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHCCCccCCCCCCcccCCCccccccHHHHHHcCCCcCC-CHHHHHHHHHH
Confidence 99999987621 2222110000 000 01117899887 57777766544
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=261.20 Aligned_cols=257 Identities=16% Similarity=0.098 Sum_probs=191.2
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccC-CeEEEEeecCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFE-KVIPINGDVAV 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~-kV~~V~GDl~~ 140 (762)
|+|||||||||||++|+++|++. +.+|++++|....... ++++.+.. .+ ..... ++.++.+|+++
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~--g~~V~~~~r~~~~~~~-~~~~~~~~-----~~------~~~~~~~~~~~~~Dl~d 94 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGK--GYEVHGLIRRSSNFNT-QRINHIYI-----DP------HNVNKALMKLHYADLTD 94 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCCSSCCC-TTTTTTC-------------------CCEEEEECCTTC
T ss_pred CeEEEEcCCchHHHHHHHHHHHC--CCEEEEEecCCccccc-hhhhhhhh-----cc------ccccccceEEEECCCCC
Confidence 68999999999999999999998 6789999997643110 11111100 00 00012 78899999997
Q ss_pred CCCCCCHHHHHhhcCC--ccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCcc-----EEEEEeCCcccC
Q psy7542 141 PDLGISAEDRQMLSET--IHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQ-----LFVYVSTAYCHP 210 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~--vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk-----~fV~vSSay~~~ 210 (762)
++ ++.+++++ +|+|||+||..... +.+...+++|+.||.+++++|++. +++ +|||+||.++++
T Consensus 95 ~~------~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~-~~~~~~~~~~v~~SS~~vyg 167 (381)
T 1n7h_A 95 AS------SLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSH-TIDSGRTVKYYQAGSSEMFG 167 (381)
T ss_dssp HH------HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHH-HHHHCCCCEEEEEEEGGGGT
T ss_pred HH------HHHHHHHhcCCCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHh-CCccCCccEEEEeCcHHHhC
Confidence 65 67777765 69999999987643 456678999999999999999986 455 999999986654
Q ss_pred CCc-ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccC
Q psy7542 211 KEK-VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPI 288 (762)
Q Consensus 211 ~~~-~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~ 288 (762)
... +++|+....|. +.|+.||+.+|.++..++.. +++++++|++.++|+
T Consensus 168 ~~~~~~~E~~~~~~~-----------------------------~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp 218 (381)
T 1n7h_A 168 STPPPQSETTPFHPR-----------------------------SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESP 218 (381)
T ss_dssp TSCSSBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECT
T ss_pred CCCCCCCCCCCCCCC-----------------------------CchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCC
Confidence 322 55665433332 78999999999999998776 999999999999998
Q ss_pred CCCCCCCCCCCCCC--chHHHHHHhcCCe-EEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCc
Q psy7542 289 WKDPLPGWTDNING--PTGLLIGAGKGII-RTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQ 365 (762)
Q Consensus 289 ~~eP~pGWidn~~g--p~~li~~~~~G~l-~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~p 365 (762)
...+ +... ...++..+..|.. ....++++...++++|+|+|++++.++.... +++||++++ .+
T Consensus 219 ~~~~------~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~------~~~~~i~~~--~~ 284 (381)
T 1n7h_A 219 RRGE------NFVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEK------PDDYVVATE--EG 284 (381)
T ss_dssp TSCT------TSHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHHHHHHHTSSS------CCEEEECCS--CE
T ss_pred CCCC------cchhHHHHHHHHHHHcCCCCeEEeCCCCceeeeEEHHHHHHHHHHHHhCCC------CCeEEeeCC--CC
Confidence 5421 1110 1123334455643 3456888899999999999999999987643 379999998 88
Q ss_pred ccHHHHHHHHHHhhccC
Q psy7542 366 ITWYDIIENGKDIARNK 382 (762)
Q Consensus 366 iT~~el~~~i~~~~G~~ 382 (762)
+|+.|+++.+.+.+|.+
T Consensus 285 ~s~~e~~~~i~~~~g~~ 301 (381)
T 1n7h_A 285 HTVEEFLDVSFGYLGLN 301 (381)
T ss_dssp EEHHHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHHHcCCC
Confidence 99999999999999764
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=253.80 Aligned_cols=230 Identities=19% Similarity=0.159 Sum_probs=180.3
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|+ . +.+|++++|... .+.+|++++
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~--g~~V~~~~r~~~----------------------------------~~~~D~~d~ 43 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-P--VGNLIALDVHSK----------------------------------EFCGDFSNP 43 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-T--TSEEEEECTTCS----------------------------------SSCCCTTCH
T ss_pred CeEEEECCCCHHHHHHHHHhh-c--CCeEEEeccccc----------------------------------cccccCCCH
Confidence 579999999999999999999 7 678999998641 236888875
Q ss_pred CCCCCHHHHHhhcCC--ccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--cc
Q psy7542 142 DLGISAEDRQMLSET--IHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE--KV 214 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~--vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~--~~ 214 (762)
+ ++.+++++ +|+|||+||.... .......+++|+.|+.+++++|++. ++ +|||+||..+++.. .+
T Consensus 44 ~------~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~~-~~v~~SS~~vy~~~~~~~ 115 (299)
T 1n2s_A 44 K------GVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANET-GA-WVVHYSTDYVFPGTGDIP 115 (299)
T ss_dssp H------HHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT-TC-EEEEEEEGGGSCCCTTCC
T ss_pred H------HHHHHHHhcCCCEEEECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEecccEEeCCCCCC
Confidence 4 67777775 9999999998764 3566788999999999999999987 55 79999998665543 35
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLP 294 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~p 294 (762)
++|+....|. +.|+.+|+.+|++++.+ ..+++++||+.|||+...
T Consensus 116 ~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~---~~~~~ilRp~~v~G~~~~--- 160 (299)
T 1n2s_A 116 WQETDATSPL-----------------------------NVYGKTKLAGEKALQDN---CPKHLIFRTSWVYAGKGN--- 160 (299)
T ss_dssp BCTTSCCCCS-----------------------------SHHHHHHHHHHHHHHHH---CSSEEEEEECSEECSSSC---
T ss_pred CCCCCCCCCc-----------------------------cHHHHHHHHHHHHHHHh---CCCeEEEeeeeecCCCcC---
Confidence 6665443332 78999999999999987 459999999999998532
Q ss_pred CCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHH
Q psy7542 295 GWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIEN 374 (762)
Q Consensus 295 GWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~ 374 (762)
.....++..+..|....+.+ +...++++++|+|++++.++.+.... ...+++||++++ +++|+.|+++.
T Consensus 161 ------~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~~~~~-~~~~~~~~i~~~--~~~s~~e~~~~ 229 (299)
T 1n2s_A 161 ------NFAKTMLRLAKERQTLSVIN--DQYGAPTGAELLADCTAHAIRVALNK-PEVAGLYHLVAG--GTTTWHDYAAL 229 (299)
T ss_dssp ------CHHHHHHHHHHHCSEEEEEC--SCEECCEEHHHHHHHHHHHHHHHHHC-GGGCEEEECCCB--SCEEHHHHHHH
T ss_pred ------cHHHHHHHHHhcCCCEEeec--CcccCCeeHHHHHHHHHHHHHHhccc-cccCceEEEeCC--CCCCHHHHHHH
Confidence 11223455555666555554 47899999999999999998865210 001589999998 88999999999
Q ss_pred HHHhhccC
Q psy7542 375 GKDIARNK 382 (762)
Q Consensus 375 i~~~~G~~ 382 (762)
+.+..|.+
T Consensus 230 i~~~~g~~ 237 (299)
T 1n2s_A 230 VFDEARKA 237 (299)
T ss_dssp HHHHHHHH
T ss_pred HHHHhCCC
Confidence 99998765
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-27 Score=277.90 Aligned_cols=270 Identities=16% Similarity=0.124 Sum_probs=199.1
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
..+++|+|||||||||||++|+++|++. ++.+|++++|...... ++ ....+++++.+
T Consensus 311 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~-~g~~V~~~~r~~~~~~------~~----------------~~~~~v~~v~~ 367 (660)
T 1z7e_A 311 TARRRTRVLILGVNGFIGNHLTERLLRE-DHYEVYGLDIGSDAIS------RF----------------LNHPHFHFVEG 367 (660)
T ss_dssp ---CCEEEEEETTTSHHHHHHHHHHHHS-SSEEEEEEESCCTTTG------GG----------------TTCTTEEEEEC
T ss_pred hhccCceEEEEcCCcHHHHHHHHHHHhc-CCCEEEEEEcCchhhh------hh----------------ccCCceEEEEC
Confidence 4457899999999999999999999997 3579999999764311 00 01257899999
Q ss_pred ecCCCCCCCCHHHHHhhcCCccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC-
Q psy7542 137 DVAVPDLGISAEDRQMLSETIHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE- 212 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~- 212 (762)
|++++. +.+..+++++|+|||+||.... ..+....+++|+.||.+++++|++. + ++|||+||..+++..
T Consensus 368 Dl~d~~-----~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~-~-~r~V~~SS~~vyg~~~ 440 (660)
T 1z7e_A 368 DISIHS-----EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-R-KRIIFPSTSEVYGMCS 440 (660)
T ss_dssp CTTTCH-----HHHHHHHHHCSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHT-T-CEEEEECCGGGGBTCC
T ss_pred CCCCcH-----HHHHHhhcCCCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHh-C-CEEEEEecHHHcCCCC
Confidence 999864 2366677789999999997653 3456678999999999999999987 5 899999998665432
Q ss_pred -cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCC
Q psy7542 213 -KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWK 290 (762)
Q Consensus 213 -~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~ 290 (762)
.+++|+....+..|. ....+.|+.||+.+|++++.++.. |++++++||+.|||+..
T Consensus 441 ~~~~~E~~~~~~~~p~----------------------~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~ 498 (660)
T 1z7e_A 441 DKYFDEDHSNLIVGPV----------------------NKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRL 498 (660)
T ss_dssp SSSBCTTTCCEEECCT----------------------TCTTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTS
T ss_pred CcccCCCccccccCcc----------------------cCCCCCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCc
Confidence 345665421100000 011258999999999999988765 99999999999999875
Q ss_pred CCCCCCCCCCC-CchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCC-cccH
Q psy7542 291 DPLPGWTDNIN-GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDF-QITW 368 (762)
Q Consensus 291 eP~pGWidn~~-gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~-piT~ 368 (762)
.+..++.-+.. ....++..+..|....++++++..+++++++|+|++++.++...... ..+++||++++ + ++|+
T Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~~--~~g~~~ni~~~--~~~~s~ 574 (660)
T 1z7e_A 499 DNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNR--CDGEIINIGNP--ENEASI 574 (660)
T ss_dssp SCHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEEHHHHHHHHHHHHHCGGGT--TTTEEEEECCG--GGEEEH
T ss_pred cccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEEHHHHHHHHHHHHhCcccc--CCCeEEEECCC--CCCcCH
Confidence 42100000001 12345566677777777888899999999999999999999875410 13689999987 5 7999
Q ss_pred HHHHHHHHHhhccC
Q psy7542 369 YDIIENGKDIARNK 382 (762)
Q Consensus 369 ~el~~~i~~~~G~~ 382 (762)
.|+++.+.+.+|.+
T Consensus 575 ~el~~~i~~~~g~~ 588 (660)
T 1z7e_A 575 EELGEMLLASFEKH 588 (660)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999998754
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-27 Score=254.78 Aligned_cols=241 Identities=17% Similarity=0.199 Sum_probs=182.2
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
..+++|+|||||||||||++|+++|++. +.+|++++|...... +.+ .. ..+++++.+
T Consensus 17 ~~~~~~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~--~~l------------------~~-~~~~~~~~~ 73 (333)
T 2q1w_A 17 RGSHMKKVFITGICGQIGSHIAELLLER--GDKVVGIDNFATGRR--EHL------------------KD-HPNLTFVEG 73 (333)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCSSCCG--GGS------------------CC-CTTEEEEEC
T ss_pred ecCCCCEEEEeCCccHHHHHHHHHHHHC--CCEEEEEECCCccch--hhH------------------hh-cCCceEEEE
Confidence 4467899999999999999999999998 678999999754321 000 00 147899999
Q ss_pred ecCCCCCCCCHHHHHhhcCC--ccEEEEcccccCcc--ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccC--
Q psy7542 137 DVAVPDLGISAEDRQMLSET--IHIVYHIAATVRFD--DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHP-- 210 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~~--vDiViH~AA~v~f~--~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~-- 210 (762)
|+++++ ++.+++++ +|+|||+||..... .... +++|+.|+.+++++|++. ++++||++||..+++
T Consensus 74 Dl~d~~------~~~~~~~~~~~D~vih~A~~~~~~~~~~~~--~~~N~~~~~~l~~a~~~~-~~~~iV~~SS~~~~g~~ 144 (333)
T 2q1w_A 74 SIADHA------LVNQLIGDLQPDAVVHTAASYKDPDDWYND--TLTNCVGGSNVVQAAKKN-NVGRFVYFQTALCYGVK 144 (333)
T ss_dssp CTTCHH------HHHHHHHHHCCSEEEECCCCCSCTTCHHHH--HHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGGCSC
T ss_pred eCCCHH------HHHHHHhccCCcEEEECceecCCCccCChH--HHHHHHHHHHHHHHHHHh-CCCEEEEECcHHHhCCC
Confidence 999865 68888877 99999999987652 2222 899999999999999987 788999999987654
Q ss_pred --CCc-ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHH-HHHcCCCEEEEeeeeec
Q psy7542 211 --KEK-VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTE-YMEAGMPCMILRPSIII 286 (762)
Q Consensus 211 --~~~-~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~-~~~~glpv~IvRPs~V~ 286 (762)
... +++|+. .|. .+.|+.||+.+|++++. ++ +++++||+.||
T Consensus 145 ~~~~~~~~~E~~--~p~----------------------------~~~Y~~sK~~~E~~~~~s~~----~~~ilR~~~v~ 190 (333)
T 2q1w_A 145 PIQQPVRLDHPR--NPA----------------------------NSSYAISKSANEDYLEYSGL----DFVTFRLANVV 190 (333)
T ss_dssp CCSSSBCTTSCC--CCT----------------------------TCHHHHHHHHHHHHHHHHTC----CEEEEEESEEE
T ss_pred cccCCCCcCCCC--CCC----------------------------CCchHHHHHHHHHHHHhhhC----CeEEEeeceEE
Confidence 211 344432 111 15899999999999988 63 89999999999
Q ss_pred cCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcc
Q psy7542 287 PIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQI 366 (762)
Q Consensus 287 G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~pi 366 (762)
|+... . .....++..+..|. .+++ ++...++++++|+|++++.++.... +++||++++ .++
T Consensus 191 gp~~~--~------~~~~~~~~~~~~~~--~~~~-~~~~~~~i~v~Dva~ai~~~~~~~~------g~~~~v~~~--~~~ 251 (333)
T 2q1w_A 191 GPRNV--S------GPLPIFFQRLSEGK--KCFV-TKARRDFVFVKDLARATVRAVDGVG------HGAYHFSSG--TDV 251 (333)
T ss_dssp STTCC--S------SHHHHHHHHHHTTC--CCEE-EECEECEEEHHHHHHHHHHHHTTCC------CEEEECSCS--CCE
T ss_pred CcCCc--C------cHHHHHHHHHHcCC--eeeC-CCceEeeEEHHHHHHHHHHHHhcCC------CCEEEeCCC--CCc
Confidence 98621 0 11223444555565 3344 5678899999999999999987543 589999998 889
Q ss_pred cHHHHHHHHHHhhccC
Q psy7542 367 TWYDIIENGKDIARNK 382 (762)
Q Consensus 367 T~~el~~~i~~~~G~~ 382 (762)
|+.|+++.+.+.+|.+
T Consensus 252 s~~e~~~~i~~~~g~~ 267 (333)
T 2q1w_A 252 AIKELYDAVVEAMALP 267 (333)
T ss_dssp EHHHHHHHHHHHTTCS
T ss_pred cHHHHHHHHHHHhCCC
Confidence 9999999999999765
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=258.71 Aligned_cols=249 Identities=16% Similarity=0.142 Sum_probs=186.8
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCC--C-cEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCE--N-VKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp--~-v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+|+|||||||||||++|+++|+++++ + .+|++++|...... ....+++++.+|
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~------------------------~~~~~~~~~~~D 56 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW------------------------HEDNPINYVQCD 56 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC------------------------CCSSCCEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc------------------------cccCceEEEEee
Confidence 57899999999999999999999831 0 69999999765321 012578899999
Q ss_pred cCCCCCCCCHHHHHhhcCC---ccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHc-CCccEEE-------EEeCC
Q psy7542 138 VAVPDLGISAEDRQMLSET---IHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFV-------YVSTA 206 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~---vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV-------~vSSa 206 (762)
+++++ ++.+++++ +|+|||+||... .+....+++|+.||.+++++|++. +++++|| |+||.
T Consensus 57 l~d~~------~~~~~~~~~~~~d~vih~a~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~ 128 (364)
T 2v6g_A 57 ISDPD------DSQAKLSPLTDVTHVFYVTWANR--STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPF 128 (364)
T ss_dssp TTSHH------HHHHHHTTCTTCCEEEECCCCCC--SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCG
T ss_pred cCCHH------HHHHHHhcCCCCCEEEECCCCCc--chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEech
Confidence 99765 78888887 999999999764 456789999999999999999985 3688998 79998
Q ss_pred cccCCC----cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-C-CCEEEE
Q psy7542 207 YCHPKE----KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-G-MPCMIL 280 (762)
Q Consensus 207 y~~~~~----~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-g-lpv~Iv 280 (762)
.+++.. .+++|+....| .++.| +.+|+++.++++. + ++++|+
T Consensus 129 ~vyg~~~~~~~~~~E~~~~~~----------------------------~~~~y----~~~E~~~~~~~~~~~~~~~~il 176 (364)
T 2v6g_A 129 ESYGKIESHDPPYTEDLPRLK----------------------------YMNFY----YDLEDIMLEEVEKKEGLTWSVH 176 (364)
T ss_dssp GGTTTSCCCCSSBCTTSCCCS----------------------------SCCHH----HHHHHHHHHHHTTSTTCEEEEE
T ss_pred hhccccccCCCCCCccccCCc----------------------------cchhh----HHHHHHHHHHhhcCCCceEEEE
Confidence 665442 35566543322 12567 4589999988764 6 999999
Q ss_pred eeeeeccCCCCCCCCCCCCCCCchHHHHHH--hcCCeEEEeeCC---CcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 281 RPSIIIPIWKDPLPGWTDNINGPTGLLIGA--GKGIIRTMYCDY---STCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 281 RPs~V~G~~~eP~pGWidn~~gp~~li~~~--~~G~l~~i~gd~---~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
||+.|||+...+.. +...+..++..+ ..|....+++++ ....++++|+|+|++++.++.++.. .+++
T Consensus 177 Rp~~v~G~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~v~Dva~a~~~~~~~~~~----~g~~ 248 (364)
T 2v6g_A 177 RPGNIFGFSPYSMM----NLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDPYA----KNEA 248 (364)
T ss_dssp EESSEECCCTTCSS----CHHHHHHHHHHHHHHHTCCBCCCSCHHHHHSCBCCEEHHHHHHHHHHHHHCGGG----TTEE
T ss_pred CCCceeCCCCCccc----chHHHHHHHHHHHHhcCCceecCCCcccccccCCCCcHHHHHHHHHHHHhCCCC----CCce
Confidence 99999998654211 000111123333 256655556666 3457889999999999999987643 3689
Q ss_pred EEecCCCCCcccHHHHHHHHHHhhccCC
Q psy7542 356 INLTANKDFQITWYDIIENGKDIARNKV 383 (762)
Q Consensus 356 yNi~s~~~~piT~~el~~~i~~~~G~~~ 383 (762)
||++++ +++|+.|+++.+.+.+|.+.
T Consensus 249 ~ni~~~--~~~s~~e~~~~i~~~~g~~~ 274 (364)
T 2v6g_A 249 FNVSNG--DVFKWKHFWKVLAEQFGVEC 274 (364)
T ss_dssp EEECCS--CCBCHHHHHHHHHHHHTCCB
T ss_pred EEecCC--CcCCHHHHHHHHHHHhCCCC
Confidence 999998 78999999999999997654
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=252.23 Aligned_cols=233 Identities=9% Similarity=0.022 Sum_probs=169.4
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|+++ |++|++++|.+... + +..|-
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~--G~~V~~l~R~~~~~-----------------------------~---~~~~~--- 43 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNAR--GHEVTLVSRKPGPG-----------------------------R---ITWDE--- 43 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCCTT-----------------------------E---EEHHH---
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCCCcC-----------------------------e---eecch---
Confidence 68999999999999999999999 77889999965321 1 11111
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccC------ccc-cHHHHHHHhHHHHHHHHHHHHHcC-CccEEEEEeCCcccCCC-
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVR------FDD-YMQTYVFLNTRGTRDMLNLSKQMI-HLQLFVYVSTAYCHPKE- 212 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~------f~~-~l~~~~~~NV~GT~~LLelA~~~~-~lk~fV~vSSay~~~~~- 212 (762)
.....++++|.|||+|+..- ++. ..+...+.|+.||.+|+++|++.+ +.+.||++||++++++.
T Consensus 44 -------~~~~~l~~~d~vihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~ 116 (298)
T 4b4o_A 44 -------LAASGLPSCDAAVNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSL 116 (298)
T ss_dssp -------HHHHCCCSCSEEEECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCS
T ss_pred -------hhHhhccCCCEEEEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCC
Confidence 12344578999999998531 111 234578899999999999999873 34568999998665543
Q ss_pred -cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCC
Q psy7542 213 -KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKD 291 (762)
Q Consensus 213 -~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~e 291 (762)
.+++|+.+..|. +.|+.+|...|....... .+++++++||+.|||+...
T Consensus 117 ~~~~~E~~p~~~~-----------------------------~~~~~~~~~~e~~~~~~~-~~~~~~~~r~~~v~g~~~~ 166 (298)
T 4b4o_A 117 TAEYDEDSPGGDF-----------------------------DFFSNLVTKWEAAARLPG-DSTRQVVVRSGVVLGRGGG 166 (298)
T ss_dssp SCCBCTTCCCSCS-----------------------------SHHHHHHHHHHHHHCCSS-SSSEEEEEEECEEECTTSH
T ss_pred CCcccccCCcccc-----------------------------chhHHHHHHHHHHHHhhc-cCCceeeeeeeeEEcCCCC
Confidence 466676444333 457777777766543222 2899999999999998421
Q ss_pred CCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHH
Q psy7542 292 PLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDI 371 (762)
Q Consensus 292 P~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el 371 (762)
+ ...++.....|.. ...+++++.++||||||+|++++.++.++.. .++||++++ +++|+.|+
T Consensus 167 ----~------~~~~~~~~~~~~~-~~~g~g~~~~~~ihv~Dva~a~~~~~~~~~~-----~g~yn~~~~--~~~t~~e~ 228 (298)
T 4b4o_A 167 ----A------MGHMLLPFRLGLG-GPIGSGHQFFPWIHIGDLAGILTHALEANHV-----HGVLNGVAP--SSATNAEF 228 (298)
T ss_dssp ----H------HHHHHHHHHTTCC-CCBTTSCSBCCEEEHHHHHHHHHHHHHCTTC-----CEEEEESCS--CCCBHHHH
T ss_pred ----c------hhHHHHHHhcCCc-ceecccCceeecCcHHHHHHHHHHHHhCCCC-----CCeEEEECC--CccCHHHH
Confidence 0 1123333334443 3468999999999999999999999988765 469999999 99999999
Q ss_pred HHHHHHhhccCCCCc
Q psy7542 372 IENGKDIARNKVPLN 386 (762)
Q Consensus 372 ~~~i~~~~G~~~P~~ 386 (762)
++.+++.+|++.+++
T Consensus 229 ~~~ia~~lgrp~~~p 243 (298)
T 4b4o_A 229 AQTFGAALGRRAFIP 243 (298)
T ss_dssp HHHHHHHHTCCCCCC
T ss_pred HHHHHHHhCcCCccc
Confidence 999999997654433
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=266.47 Aligned_cols=268 Identities=15% Similarity=0.074 Sum_probs=188.9
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|+|||||||||||++|++.|++. +.+|++++|..... ..+.+|+.+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~--G~~V~~l~R~~~~~-------------------------------~~v~~d~~~ 193 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTG--GHEVIQLVRKEPKP-------------------------------GKRFWDPLN 193 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESSSCCT-------------------------------TCEECCTTS
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCCCCc-------------------------------cceeecccc
Confidence 789999999999999999999998 67999999976431 125678764
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCc----cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccC-C--Cc
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRF----DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHP-K--EK 213 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f----~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~-~--~~ 213 (762)
. +..+++++|+|||+||.... .......+++|+.||.+++++|.+..++++|||+||+++++ . ..
T Consensus 194 ~--------~~~~l~~~D~Vih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~ 265 (516)
T 3oh8_A 194 P--------ASDLLDGADVLVHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDE 265 (516)
T ss_dssp C--------CTTTTTTCSEEEECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEE
T ss_pred h--------hHHhcCCCCEEEECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCC
Confidence 3 24556799999999998632 24456789999999999999954545889999999987765 2 23
Q ss_pred ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCC
Q psy7542 214 VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPL 293 (762)
Q Consensus 214 ~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~ 293 (762)
+++|+... |. +.|+.+|..+|.++......|++++|+||+.|||+..
T Consensus 266 ~~~E~~~~-~~-----------------------------~~y~~~~~~~E~~~~~~~~~gi~~~ilRp~~v~Gp~~--- 312 (516)
T 3oh8_A 266 ILTEESES-GD-----------------------------DFLAEVCRDWEHATAPASDAGKRVAFIRTGVALSGRG--- 312 (516)
T ss_dssp EECTTSCC-CS-----------------------------SHHHHHHHHHHHTTHHHHHTTCEEEEEEECEEEBTTB---
T ss_pred ccCCCCCC-Cc-----------------------------ChHHHHHHHHHHHHHHHHhCCCCEEEEEeeEEECCCC---
Confidence 56665432 21 6799999999998876655599999999999999852
Q ss_pred CCCCCCCCCchH-HHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHH
Q psy7542 294 PGWTDNINGPTG-LLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDII 372 (762)
Q Consensus 294 pGWidn~~gp~~-li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~ 372 (762)
+... ++..+..|.. ...+++++.+++|+++|+|++++.++.+... .++||++++ +++|+.|++
T Consensus 313 --------~~~~~~~~~~~~g~~-~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~-----~g~~ni~~~--~~~s~~el~ 376 (516)
T 3oh8_A 313 --------GMLPLLKTLFSTGLG-GKFGDGTSWFSWIAIDDLTDIYYRAIVDAQI-----SGPINAVAP--NPVSNADMT 376 (516)
T ss_dssp --------SHHHHHHHTTC---C-CCCTTSCCEECEEEHHHHHHHHHHHHHCTTC-----CEEEEESCS--CCEEHHHHH
T ss_pred --------ChHHHHHHHHHhCCC-cccCCCCceEceEeHHHHHHHHHHHHhCccc-----CCcEEEECC--CCCCHHHHH
Confidence 1222 2222333332 3567889999999999999999999987654 469999998 899999999
Q ss_pred HHHHHhhccCCCCccccccCCc---------------ccc-----ccCCCchhhHHHHHHhhhhhh
Q psy7542 373 ENGKDIARNKVPLNNVLWYPGG---------------AMT-----NRGYEPVLKRVHNRIKKGFDI 418 (762)
Q Consensus 373 ~~i~~~~G~~~P~~~~~w~p~~---------------~~~-----~lG~kP~l~~l~~ki~~~~~~ 418 (762)
+.+.+.+|.+.++..+.|.... ... .+||+|++..+.+.+.+.++.
T Consensus 377 ~~i~~~~g~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~kl~~lG~~~~~~~l~e~l~~~l~~ 442 (516)
T 3oh8_A 377 KILATSMHRPAFIQIPSLGPKILLGSQGAEELALASQRTAPAALENLSHTFRYTDIGAAIAHELGY 442 (516)
T ss_dssp HHTTC---------------------CCGGGGGGCEEEECCHHHHHTTCCCSCSSHHHHHHHHHTC
T ss_pred HHHHHHhCCCCCCCCCHHHHHHHhCCchhHHHhhcCCeechHHHHHCCCCCCCCCHHHHHHHHhCc
Confidence 9999998765433322222110 000 178888876677777665543
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-27 Score=240.16 Aligned_cols=222 Identities=14% Similarity=0.035 Sum_probs=165.4
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
.|+|||||||||||++|+++|++. +.+|++++|..... .....+++++.+|+++
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~------------------------~~~~~~~~~~~~Dl~d 57 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNR--GFEVTAVVRHPEKI------------------------KIENEHLKVKKADVSS 57 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTT--TCEEEEECSCGGGC------------------------CCCCTTEEEECCCTTC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC--CCEEEEEEcCcccc------------------------hhccCceEEEEecCCC
Confidence 378999999999999999999998 67999999975321 1123689999999997
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc-cccccc
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK-VLEEKT 219 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~-~i~E~~ 219 (762)
++ ++.++++++|+|||+|+..... ...+++|+.|+.+++++|++. ++++|||+||..+..... ...|+.
T Consensus 58 ~~------~~~~~~~~~d~vi~~a~~~~~~---~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~~~~~~~~~~~~~~ 127 (227)
T 3dhn_A 58 LD------EVCEVCKGADAVISAFNPGWNN---PDIYDETIKVYLTIIDGVKKA-GVNRFLMVGGAGSLFIAPGLRLMDS 127 (227)
T ss_dssp HH------HHHHHHTTCSEEEECCCC---------CCSHHHHHHHHHHHHHHHT-TCSEEEEECCSTTSEEETTEEGGGT
T ss_pred HH------HHHHHhcCCCEEEEeCcCCCCC---hhHHHHHHHHHHHHHHHHHHh-CCCEEEEeCChhhccCCCCCccccC
Confidence 65 8999999999999999865222 236788999999999999997 789999999986543221 222221
Q ss_pred CCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCCCCCCC
Q psy7542 220 YPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPGWTD 298 (762)
Q Consensus 220 ~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~pGWid 298 (762)
...| .+.|+.+|+.+|.+++.+++. +++++++||+.|||+.... +.
T Consensus 128 ~~~p-----------------------------~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~--~~-- 174 (227)
T 3dhn_A 128 GEVP-----------------------------ENILPGVKALGEFYLNFLMKEKEIDWVFFSPAADMRPGVRT--GR-- 174 (227)
T ss_dssp TCSC-----------------------------GGGHHHHHHHHHHHHHTGGGCCSSEEEEEECCSEEESCCCC--CC--
T ss_pred Ccch-----------------------------HHHHHHHHHHHHHHHHHHhhccCccEEEEeCCcccCCCccc--cc--
Confidence 1111 168999999999999888855 9999999999999986432 10
Q ss_pred CCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHH
Q psy7542 299 NINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYD 370 (762)
Q Consensus 299 n~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~e 370 (762)
.. ..+...... ++. .++++++|+|++++.++.++.. .+++||++++ ++.+|++
T Consensus 175 --~~--------~~~~~~~~~--~~~-~~~i~~~Dva~ai~~~l~~~~~----~g~~~~~~~~--~~~~~~~ 227 (227)
T 3dhn_A 175 --YR--------LGKDDMIVD--IVG-NSHISVEDYAAAMIDELEHPKH----HQERFTIGYL--EHHHHHH 227 (227)
T ss_dssp --CE--------EESSBCCCC--TTS-CCEEEHHHHHHHHHHHHHSCCC----CSEEEEEECC--SCCC---
T ss_pred --ee--------ecCCCcccC--CCC-CcEEeHHHHHHHHHHHHhCccc----cCcEEEEEee--hhcccCC
Confidence 00 011111111 222 8999999999999999998876 5899999999 8888863
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=249.38 Aligned_cols=240 Identities=18% Similarity=0.145 Sum_probs=185.8
Q ss_pred hhhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCe
Q psy7542 53 DRISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKV 131 (762)
Q Consensus 53 ~~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV 131 (762)
+++.+++++|+|||||||||||++|+++|++. ++. +|+++.|.... .+.+.+.+ ...++
T Consensus 13 ~~~~~~~~~k~vlVTGatG~iG~~l~~~L~~~-~g~~~V~~~~r~~~~---~~~~~~~~----------------~~~~v 72 (344)
T 2gn4_A 13 PNHQNMLDNQTILITGGTGSFGKCFVRKVLDT-TNAKKIIVYSRDELK---QSEMAMEF----------------NDPRM 72 (344)
T ss_dssp ---CCTTTTCEEEEETTTSHHHHHHHHHHHHH-CCCSEEEEEESCHHH---HHHHHHHH----------------CCTTE
T ss_pred ccHHHhhCCCEEEEECCCcHHHHHHHHHHHhh-CCCCEEEEEECChhh---HHHHHHHh----------------cCCCE
Confidence 45667789999999999999999999999998 355 88999996321 11121111 12578
Q ss_pred EEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcc
Q psy7542 132 IPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYC 208 (762)
Q Consensus 132 ~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~ 208 (762)
.++.+|+++++ ++.++++++|+|||+||.... .......+++|+.||.+++++|.+. ++++||++||..+
T Consensus 73 ~~~~~Dl~d~~------~l~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~-~v~~~V~~SS~~~ 145 (344)
T 2gn4_A 73 RFFIGDVRDLE------RLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKN-AISQVIALSTDKA 145 (344)
T ss_dssp EEEECCTTCHH------HHHHHTTTCSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEECCGGG
T ss_pred EEEECCCCCHH------HHHHHHhcCCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEecCCcc
Confidence 99999999865 788899999999999997653 2334678999999999999999997 7899999999644
Q ss_pred cCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEeeee
Q psy7542 209 HPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILRPSI 284 (762)
Q Consensus 209 ~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvRPs~ 284 (762)
.. |. +.|+.||+.+|.++..++. .|++++++|||.
T Consensus 146 ~~------------p~-----------------------------~~Y~~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~ 184 (344)
T 2gn4_A 146 AN------------PI-----------------------------NLYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGN 184 (344)
T ss_dssp SS------------CC-----------------------------SHHHHHHHHHHHHHHHGGGCCCSSCCEEEEECCCE
T ss_pred CC------------Cc-----------------------------cHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEecc
Confidence 21 11 6899999999999998874 279999999999
Q ss_pred eccCCCCCCCCCCCCCCCchHHHHHHhcCC-eEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCC
Q psy7542 285 IIPIWKDPLPGWTDNINGPTGLLIGAGKGI-IRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKD 363 (762)
Q Consensus 285 V~G~~~eP~pGWidn~~gp~~li~~~~~G~-l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~ 363 (762)
|+|+... ....++..+..|. ...+ .+++..+++++++|+|++++.++.... .+++||++++
T Consensus 185 v~g~~~~----------~i~~~~~~~~~g~~~~~i-~~~~~~r~~i~v~D~a~~v~~~l~~~~-----~g~~~~~~~~-- 246 (344)
T 2gn4_A 185 VVGSRGS----------VVPFFKKLVQNKASEIPI-TDIRMTRFWITLDEGVSFVLKSLKRMH-----GGEIFVPKIP-- 246 (344)
T ss_dssp ETTCTTS----------HHHHHHHHHHHTCCCEEE-SCTTCEEEEECHHHHHHHHHHHHHHCC-----SSCEEEECCC--
T ss_pred EECCCCC----------HHHHHHHHHHcCCCceEE-eCCCeEEeeEEHHHHHHHHHHHHhhcc-----CCCEEecCCC--
Confidence 9997521 1123445555666 3333 477888999999999999999998753 3679998765
Q ss_pred CcccHHHHHHHHHHhh
Q psy7542 364 FQITWYDIIENGKDIA 379 (762)
Q Consensus 364 ~piT~~el~~~i~~~~ 379 (762)
++|+.|+++.+.+..
T Consensus 247 -~~s~~el~~~i~~~~ 261 (344)
T 2gn4_A 247 -SMKMTDLAKALAPNT 261 (344)
T ss_dssp -EEEHHHHHHHHCTTC
T ss_pred -cEEHHHHHHHHHHhC
Confidence 599999999998655
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-27 Score=259.61 Aligned_cols=215 Identities=20% Similarity=0.210 Sum_probs=174.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
|+|||||||||||++|+++|+++ +. +|++++|. .
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~--g~~~v~~~d~~------------------------------------------~- 35 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTST--TDHHIFEVHRQ------------------------------------------T- 35 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH--CCCEEEECCTT------------------------------------------C-
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCCEEEEECCC------------------------------------------C-
Confidence 68999999999999999999999 44 66766552 1
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCcc-EEEEEeCCcccCCCccccccc
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQ-LFVYVSTAYCHPKEKVLEEKT 219 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk-~fV~vSSay~~~~~~~i~E~~ 219 (762)
+.+++.++++++|+|||+||..... ....++++|+.++.+++++|++. +++ +|||+||+++++
T Consensus 36 -----d~~~l~~~~~~~d~Vih~a~~~~~~-~~~~~~~~n~~~~~~l~~a~~~~-~~~~~~v~~Ss~~~~~--------- 99 (369)
T 3st7_A 36 -----KEEELESALLKADFIVHLAGVNRPE-HDKEFSLGNVSYLDHVLDILTRN-TKKPAILLSSSIQATQ--------- 99 (369)
T ss_dssp -----CHHHHHHHHHHCSEEEECCCSBCTT-CSTTCSSSCCBHHHHHHHHHTTC-SSCCEEEEEEEGGGGS---------
T ss_pred -----CHHHHHHHhccCCEEEECCcCCCCC-CHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEeCchhhcC---------
Confidence 2346777778899999999987653 34567789999999999999987 555 999999997754
Q ss_pred CCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCCCCCCC
Q psy7542 220 YPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPGWTD 298 (762)
Q Consensus 220 ~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~pGWid 298 (762)
++.|+.+|+.+|++++++++. +++++|+||+.|+|+...|.
T Consensus 100 ---------------------------------~~~Y~~sK~~~E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~----- 141 (369)
T 3st7_A 100 ---------------------------------DNPYGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKPN----- 141 (369)
T ss_dssp ---------------------------------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTT-----
T ss_pred ---------------------------------CCCchHHHHHHHHHHHHHHHHhCCCEEEEECCceeCCCCCCC-----
Confidence 178999999999999998876 99999999999999976642
Q ss_pred CCCCc-hHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHH
Q psy7542 299 NINGP-TGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKD 377 (762)
Q Consensus 299 n~~gp-~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~ 377 (762)
..+. ..++..+..|.... .++++..++++++||+|++++.++...... .+++||++++ +++|+.|+++.+.+
T Consensus 142 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~v~Dva~~~~~~l~~~~~~---~~~~~~i~~~--~~~s~~e~~~~~~~ 214 (369)
T 3st7_A 142 -YNSVIATFCYKIARNEEIQ-VNDRNVELTLNYVDDIVAEIKRAIEGTPTI---ENGVPTVPNV--FKVTLGEIVDLLYK 214 (369)
T ss_dssp -SSCHHHHHHHHHHTTCCCC-CSCTTCEEEEEEHHHHHHHHHHHHHTCCCE---ETTEECCSCC--EEEEHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHcCCCeE-ecCCCeEEEEEEHHHHHHHHHHHHhCCccc---CCceEEeCCC--CceeHHHHHHHHHH
Confidence 1222 23444555665433 357889999999999999999999876541 1689999998 89999999999999
Q ss_pred hhccC
Q psy7542 378 IARNK 382 (762)
Q Consensus 378 ~~G~~ 382 (762)
..|.+
T Consensus 215 ~~g~~ 219 (369)
T 3st7_A 215 FKQSR 219 (369)
T ss_dssp HHHHH
T ss_pred HhCCC
Confidence 98754
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-26 Score=237.72 Aligned_cols=222 Identities=17% Similarity=0.203 Sum_probs=173.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++++++|++..++.+|++++|..... +.+. ..+++++.+|++++
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~---~~l~--------------------~~~~~~~~~D~~d~ 57 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKA---STLA--------------------DQGVEVRHGDYNQP 57 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTT---HHHH--------------------HTTCEEEECCTTCH
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHH---hHHh--------------------hcCCeEEEeccCCH
Confidence 579999999999999999999873457889999975421 1110 14678999999986
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccCC
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYP 221 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~~ 221 (762)
+ ++.++++++|+|||+|+.. .. . ++|+.|+.+++++|++. ++++|||+||.++..
T Consensus 58 ~------~l~~~~~~~d~vi~~a~~~-~~----~--~~n~~~~~~l~~a~~~~-~~~~~v~~Ss~~~~~----------- 112 (287)
T 2jl1_A 58 E------SLQKAFAGVSKLLFISGPH-YD----N--TLLIVQHANVVKAARDA-GVKHIAYTGYAFAEE----------- 112 (287)
T ss_dssp H------HHHHHTTTCSEEEECCCCC-SC----H--HHHHHHHHHHHHHHHHT-TCSEEEEEEETTGGG-----------
T ss_pred H------HHHHHHhcCCEEEEcCCCC-cC----c--hHHHHHHHHHHHHHHHc-CCCEEEEECCCCCCC-----------
Confidence 5 7899999999999999962 21 1 67999999999999987 789999999986531
Q ss_pred CCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCCC
Q psy7542 222 PPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNIN 301 (762)
Q Consensus 222 ~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~~ 301 (762)
. |..|+.+|+.+|+++++. |++++++||+.++|+.. +
T Consensus 113 ~------------------------------~~~y~~~K~~~E~~~~~~---~~~~~ilrp~~~~~~~~---~------- 149 (287)
T 2jl1_A 113 S------------------------------IIPLAHVHLATEYAIRTT---NIPYTFLRNALYTDFFV---N------- 149 (287)
T ss_dssp C------------------------------CSTHHHHHHHHHHHHHHT---TCCEEEEEECCBHHHHS---S-------
T ss_pred C------------------------------CCchHHHHHHHHHHHHHc---CCCeEEEECCEeccccc---h-------
Confidence 0 147999999999999753 89999999998877521 0
Q ss_pred CchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHhhcc
Q psy7542 302 GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIARN 381 (762)
Q Consensus 302 gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~~G~ 381 (762)
..+......|.. ..+.++...++++++|+|++++.++..+.. .+++||++++ +++|+.|+++.+.+..|.
T Consensus 150 --~~~~~~~~~~~~--~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~----~g~~~~i~~~--~~~s~~e~~~~i~~~~g~ 219 (287)
T 2jl1_A 150 --EGLRASTESGAI--VTNAGSGIVNSVTRNELALAAATVLTEEGH----ENKTYNLVSN--QPWTFDELAQILSEVSGK 219 (287)
T ss_dssp --GGGHHHHHHTEE--EESCTTCCBCCBCHHHHHHHHHHHHTSSSC----TTEEEEECCS--SCBCHHHHHHHHHHHHSS
T ss_pred --hhHHHHhhCCce--eccCCCCccCccCHHHHHHHHHHHhcCCCC----CCcEEEecCC--CcCCHHHHHHHHHHHHCC
Confidence 111122223433 245667889999999999999999886543 4689999998 889999999999999976
Q ss_pred CCC
Q psy7542 382 KVP 384 (762)
Q Consensus 382 ~~P 384 (762)
+.+
T Consensus 220 ~~~ 222 (287)
T 2jl1_A 220 KVV 222 (287)
T ss_dssp CCE
T ss_pred cce
Confidence 544
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=235.54 Aligned_cols=211 Identities=15% Similarity=0.177 Sum_probs=171.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+|||||||||||++|+++|++. +.+|+++.|..... ...+++++.+|++
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~--G~~V~~~~r~~~~~--------------------------~~~~~~~~~~Dl~ 53 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPM--AEILRLADLSPLDP--------------------------AGPNEECVQCDLA 53 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGG--EEEEEEEESSCCCC--------------------------CCTTEEEEECCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhc--CCEEEEEecCCccc--------------------------cCCCCEEEEcCCC
Confidence 5689999999999999999999998 67899999976432 1357899999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC---Ccccc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK---EKVLE 216 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~---~~~i~ 216 (762)
+++ ++.++++++|+|||+||.. ..++++..+++|+.|+.+++++|++. +.++||++||..+.+. ..+++
T Consensus 54 d~~------~~~~~~~~~D~vi~~Ag~~-~~~~~~~~~~~N~~g~~~l~~a~~~~-~~~~iv~~SS~~~~g~~~~~~~~~ 125 (267)
T 3rft_A 54 DAN------AVNAMVAGCDGIVHLGGIS-VEKPFEQILQGNIIGLYNLYEAARAH-GQPRIVFASSNHTIGYYPQTERLG 125 (267)
T ss_dssp CHH------HHHHHHTTCSEEEECCSCC-SCCCHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEEEEGGGGTTSBTTSCBC
T ss_pred CHH------HHHHHHcCCCEEEECCCCc-CcCCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEcchHHhCCCCCCCCCC
Confidence 765 8999999999999999984 45677889999999999999999987 7889999999866532 23556
Q ss_pred cccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCCCC
Q psy7542 217 EKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPG 295 (762)
Q Consensus 217 E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~pG 295 (762)
|+....|. +.|+.||+.+|.+++.++.+ +++++++||+.|+|+.
T Consensus 126 e~~~~~~~-----------------------------~~Y~~sK~~~e~~~~~~a~~~g~~~~~vr~~~v~~~~------ 170 (267)
T 3rft_A 126 PDVPARPD-----------------------------GLYGVSKCFGENLARMYFDKFGQETALVRIGSCTPEP------ 170 (267)
T ss_dssp TTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECBCSSSC------
T ss_pred CCCCCCCC-----------------------------ChHHHHHHHHHHHHHHHHHHhCCeEEEEEeecccCCC------
Confidence 65443333 68999999999999988766 9999999999998752
Q ss_pred CCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHH
Q psy7542 296 WTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDI 371 (762)
Q Consensus 296 Widn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el 371 (762)
+++....++++++|+++++..++..... ...+++++++ ++.+|.++
T Consensus 171 ------------------------~~~~~~~~~~~~~d~a~~~~~~~~~~~~----~~~~~~~~s~--~~~~~~~~ 216 (267)
T 3rft_A 171 ------------------------NNYRMLSTWFSHDDFVSLIEAVFRAPVL----GCPVVWGASA--NDAGWWDN 216 (267)
T ss_dssp ------------------------CSTTHHHHBCCHHHHHHHHHHHHHCSCC----CSCEEEECCC--CTTCCBCC
T ss_pred ------------------------CCCCceeeEEcHHHHHHHHHHHHhCCCC----CceEEEEeCC--CCCCcccC
Confidence 1334567899999999999999887655 3467888877 56666554
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-25 Score=228.12 Aligned_cols=217 Identities=12% Similarity=0.133 Sum_probs=167.6
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCe-EEEEe
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKV-IPING 136 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV-~~V~G 136 (762)
.++||+|||||||||||++|+++|+++ +.+|++++|.... ++++. ..++ +++.+
T Consensus 18 ~l~~~~ilVtGatG~iG~~l~~~L~~~--G~~V~~~~R~~~~------~~~~~-----------------~~~~~~~~~~ 72 (236)
T 3e8x_A 18 YFQGMRVLVVGANGKVARYLLSELKNK--GHEPVAMVRNEEQ------GPELR-----------------ERGASDIVVA 72 (236)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSGGG------HHHHH-----------------HTTCSEEEEC
T ss_pred CcCCCeEEEECCCChHHHHHHHHHHhC--CCeEEEEECChHH------HHHHH-----------------hCCCceEEEc
Confidence 368999999999999999999999998 6789999997532 11110 1367 89999
Q ss_pred ecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccc
Q psy7542 137 DVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLE 216 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~ 216 (762)
|++ . ++.+.+.++|+|||+||.... ..+...+++|+.|+.+++++|++. ++++||++||..+...
T Consensus 73 Dl~-~-------~~~~~~~~~D~vi~~ag~~~~-~~~~~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~~~~~----- 137 (236)
T 3e8x_A 73 NLE-E-------DFSHAFASIDAVVFAAGSGPH-TGADKTILIDLWGAIKTIQEAEKR-GIKRFIMVSSVGTVDP----- 137 (236)
T ss_dssp CTT-S-------CCGGGGTTCSEEEECCCCCTT-SCHHHHHHTTTHHHHHHHHHHHHH-TCCEEEEECCTTCSCG-----
T ss_pred ccH-H-------HHHHHHcCCCEEEECCCCCCC-CCccccchhhHHHHHHHHHHHHHc-CCCEEEEEecCCCCCC-----
Confidence 998 2 467778899999999997654 457789999999999999999987 7899999999544321
Q ss_pred cccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCC
Q psy7542 217 EKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGW 296 (762)
Q Consensus 217 E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGW 296 (762)
|.. + .+ .+.|+.+|+.+|.+++. .|++++++||+.|+|+...
T Consensus 138 ~~~---~-~~--------------------------~~~Y~~sK~~~e~~~~~---~gi~~~~lrpg~v~~~~~~----- 179 (236)
T 3e8x_A 138 DQG---P-MN--------------------------MRHYLVAKRLADDELKR---SSLDYTIVRPGPLSNEEST----- 179 (236)
T ss_dssp GGS---C-GG--------------------------GHHHHHHHHHHHHHHHH---SSSEEEEEEECSEECSCCC-----
T ss_pred CCC---h-hh--------------------------hhhHHHHHHHHHHHHHH---CCCCEEEEeCCcccCCCCC-----
Confidence 110 0 00 16899999999999873 2999999999999997432
Q ss_pred CCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHH
Q psy7542 297 TDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGK 376 (762)
Q Consensus 297 idn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~ 376 (762)
+. .....+.....++++++|+|++++.++.++.. .+++||++++ ++++.|+++.+.
T Consensus 180 ----------------~~-~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~----~g~~~~v~~~---~~~~~e~~~~i~ 235 (236)
T 3e8x_A 180 ----------------GK-VTVSPHFSEITRSITRHDVAKVIAELVDQQHT----IGKTFEVLNG---DTPIAKVVEQLG 235 (236)
T ss_dssp ----------------SE-EEEESSCSCCCCCEEHHHHHHHHHHHTTCGGG----TTEEEEEEEC---SEEHHHHHHTC-
T ss_pred ----------------Ce-EEeccCCCcccCcEeHHHHHHHHHHHhcCccc----cCCeEEEeCC---CcCHHHHHHHhc
Confidence 11 11233455568999999999999999987754 4789999987 499999998764
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.8e-25 Score=229.50 Aligned_cols=225 Identities=18% Similarity=0.152 Sum_probs=173.5
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++++++|+ . +.+|++++|.... . .+ +.+|++++
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~--g~~V~~~~r~~~~-------------------------~---~~---~~~Dl~~~ 46 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLS-E--RHEVIKVYNSSEI-------------------------Q---GG---YKLDLTDF 46 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHT-T--TSCEEEEESSSCC-------------------------T---TC---EECCTTSH
T ss_pred CEEEEECCCChhHHHHHHHHh-c--CCeEEEecCCCcC-------------------------C---CC---ceeccCCH
Confidence 579999999999999999999 4 4678999997531 1 12 78999876
Q ss_pred CCCCCHHHHHhhcCC--ccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc-cc
Q psy7542 142 DLGISAEDRQMLSET--IHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK-VL 215 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~--vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~-~i 215 (762)
+ ++.+++++ +|+|||+||..... +.+...+++|+.|+.+++++|++. +. +|||+||..++.... ++
T Consensus 47 ~------~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~iv~~SS~~~~~~~~~~~ 118 (273)
T 2ggs_A 47 P------RLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVI-DS-YIVHISTDYVFDGEKGNY 118 (273)
T ss_dssp H------HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TC-EEEEEEEGGGSCSSSCSB
T ss_pred H------HHHHHHHhcCCCEEEECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHh-CC-eEEEEecceeEcCCCCCc
Confidence 5 67777775 99999999987643 456788999999999999999986 44 899999987664432 55
Q ss_pred ccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCC
Q psy7542 216 EEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPG 295 (762)
Q Consensus 216 ~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pG 295 (762)
.|+..+.|. +.|+.||+.+|.+++. ++++++||+.|+|. .
T Consensus 119 ~e~~~~~~~-----------------------------~~Y~~sK~~~e~~~~~-----~~~~~iR~~~v~G~--~---- 158 (273)
T 2ggs_A 119 KEEDIPNPI-----------------------------NYYGLSKLLGETFALQ-----DDSLIIRTSGIFRN--K---- 158 (273)
T ss_dssp CTTSCCCCS-----------------------------SHHHHHHHHHHHHHCC-----TTCEEEEECCCBSS--S----
T ss_pred CCCCCCCCC-----------------------------CHHHHHHHHHHHHHhC-----CCeEEEeccccccc--c----
Confidence 665433332 6899999999999876 68899999999972 1
Q ss_pred CCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHH
Q psy7542 296 WTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENG 375 (762)
Q Consensus 296 Widn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i 375 (762)
+ ....++..+..|....+.++ ..++++++|+|++++.++.... .++||+++ +++|+.|+++.+
T Consensus 159 ---~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dva~~i~~~~~~~~------~g~~~i~~---~~~s~~e~~~~~ 221 (273)
T 2ggs_A 159 ---G--FPIYVYKTLKEGKTVFAFKG---YYSPISARKLASAILELLELRK------TGIIHVAG---ERISRFELALKI 221 (273)
T ss_dssp ---S--HHHHHHHHHHTTCCEEEESC---EECCCBHHHHHHHHHHHHHHTC------CEEEECCC---CCEEHHHHHHHH
T ss_pred ---H--HHHHHHHHHHcCCCEEeecC---CCCceEHHHHHHHHHHHHhcCc------CCeEEECC---CcccHHHHHHHH
Confidence 1 11223344456655545443 7899999999999999998653 35999986 579999999999
Q ss_pred HHhhccCCCC
Q psy7542 376 KDIARNKVPL 385 (762)
Q Consensus 376 ~~~~G~~~P~ 385 (762)
.+.+|.+.++
T Consensus 222 ~~~~g~~~~~ 231 (273)
T 2ggs_A 222 KEKFNLPGEV 231 (273)
T ss_dssp HHHTTCCSCE
T ss_pred HHHhCCChhh
Confidence 9999766543
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=228.06 Aligned_cols=209 Identities=17% Similarity=0.247 Sum_probs=165.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC-
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV- 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~- 140 (762)
|+|||||||||||++++++|++. +.+|++++|..... ....+++++.+|+++
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~-------------------------~~~~~~~~~~~D~~d~ 53 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTT--DYQIYAGARKVEQV-------------------------PQYNNVKAVHFDVDWT 53 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTS--SCEEEEEESSGGGS-------------------------CCCTTEEEEECCTTSC
T ss_pred CeEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCccch-------------------------hhcCCceEEEecccCC
Confidence 57999999999999999999998 68999999975321 112689999999998
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccC
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTY 220 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~ 220 (762)
++ ++.++++++|+|||+|+.... ..+++|+.|+.+++++|++. ++++||++||.++.... +..|.
T Consensus 54 ~~------~~~~~~~~~d~vi~~ag~~~~-----~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~~~~~~-~~~e~-- 118 (219)
T 3dqp_A 54 PE------EMAKQLHGMDAIINVSGSGGK-----SLLKVDLYGAVKLMQAAEKA-EVKRFILLSTIFSLQPE-KWIGA-- 118 (219)
T ss_dssp HH------HHHTTTTTCSEEEECCCCTTS-----SCCCCCCHHHHHHHHHHHHT-TCCEEEEECCTTTTCGG-GCCSH--
T ss_pred HH------HHHHHHcCCCEEEECCcCCCC-----CcEeEeHHHHHHHHHHHHHh-CCCEEEEECcccccCCC-ccccc--
Confidence 44 899999999999999997652 25678999999999999987 78999999999776432 12220
Q ss_pred CCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCC
Q psy7542 221 PPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNI 300 (762)
Q Consensus 221 ~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~ 300 (762)
...+ .+.|+.+|+.+|++++ ...+++++++||+.++|+... |
T Consensus 119 ----------------------~~~~------~~~Y~~sK~~~e~~~~--~~~~i~~~ilrp~~v~g~~~~---~----- 160 (219)
T 3dqp_A 119 ----------------------GFDA------LKDYYIAKHFADLYLT--KETNLDYTIIQPGALTEEEAT---G----- 160 (219)
T ss_dssp ----------------------HHHH------THHHHHHHHHHHHHHH--HSCCCEEEEEEECSEECSCCC---S-----
T ss_pred ----------------------cccc------ccHHHHHHHHHHHHHH--hccCCcEEEEeCceEecCCCC---C-----
Confidence 0011 2689999999999997 223999999999999997432 1
Q ss_pred CCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHH
Q psy7542 301 NGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIEN 374 (762)
Q Consensus 301 ~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~ 374 (762)
... . ++...++++++|+|++++.++.++.. .+++||++++ +.++.|+.+.
T Consensus 161 -------------~~~--~--~~~~~~~i~~~Dva~~i~~~l~~~~~----~g~~~~i~~g---~~~~~e~~~~ 210 (219)
T 3dqp_A 161 -------------LID--I--NDEVSASNTIGDVADTIKELVMTDHS----IGKVISMHNG---KTAIKEALES 210 (219)
T ss_dssp -------------EEE--E--SSSCCCCEEHHHHHHHHHHHHTCGGG----TTEEEEEEEC---SEEHHHHHHT
T ss_pred -------------ccc--c--CCCcCCcccHHHHHHHHHHHHhCccc----cCcEEEeCCC---CccHHHHHHH
Confidence 000 1 26678999999999999999987654 4789999887 4899888764
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=233.46 Aligned_cols=212 Identities=15% Similarity=0.168 Sum_probs=167.7
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++. +.+|+++.|..... ...+++++.+|++++
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~--------------------------~~~~~~~~~~Dl~d~ 54 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTL--AHEVRLSDIVDLGA--------------------------AEAHEEIVACDLADA 54 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGT--EEEEEECCSSCCCC--------------------------CCTTEEECCCCTTCH
T ss_pred ceEEEECCCCHHHHHHHHHHHhC--CCEEEEEeCCCccc--------------------------cCCCccEEEccCCCH
Confidence 58999999999999999999998 67999999975421 113578899999976
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC---Ccccccc
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK---EKVLEEK 218 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~---~~~i~E~ 218 (762)
+ ++.++++++|+|||+|+... ...+...+++|+.|+.+++++|++. ++++||++||..+++. ..+++|+
T Consensus 55 ~------~~~~~~~~~d~vi~~a~~~~-~~~~~~~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS~~~~~~~~~~~~~~E~ 126 (267)
T 3ay3_A 55 Q------AVHDLVKDCDGIIHLGGVSV-ERPWNDILQANIIGAYNLYEAARNL-GKPRIVFASSNHTIGYYPRTTRIDTE 126 (267)
T ss_dssp H------HHHHHHTTCSEEEECCSCCS-CCCHHHHHHHTHHHHHHHHHHHHHT-TCCEEEEEEEGGGSTTSBTTSCBCTT
T ss_pred H------HHHHHHcCCCEEEECCcCCC-CCCHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEeCCHHHhCCCCCCCCCCCC
Confidence 5 78888999999999999763 4566788999999999999999986 7889999999866543 2356666
Q ss_pred cCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCCCCCC
Q psy7542 219 TYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPGWT 297 (762)
Q Consensus 219 ~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~pGWi 297 (762)
....|. +.|+.||+.+|.+++.+... +++++++||+.||+. | +
T Consensus 127 ~~~~~~-----------------------------~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~~~---~--~-- 170 (267)
T 3ay3_A 127 VPRRPD-----------------------------SLYGLSKCFGEDLASLYYHKFDIETLNIRIGSCFPK---P--K-- 170 (267)
T ss_dssp SCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHTTCCCEEEEEECBCSSS---C--C--
T ss_pred CCCCCC-----------------------------ChHHHHHHHHHHHHHHHHHHcCCCEEEEeceeecCC---C--C--
Confidence 443332 68999999999999988765 999999999999842 1 0
Q ss_pred CCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHH
Q psy7542 298 DNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIEN 374 (762)
Q Consensus 298 dn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~ 374 (762)
+++...++++++|+|++++.++..... ...+||+.++ ...+|.++.+.
T Consensus 171 -----------------------~~~~~~~~~~~~dva~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~d~~~~ 218 (267)
T 3ay3_A 171 -----------------------DARMMATWLSVDDFMRLMKRAFVAPKL----GCTVVYGASA--NTESWWDNDKS 218 (267)
T ss_dssp -----------------------SHHHHHHBCCHHHHHHHHHHHHHSSCC----CEEEEEECCS--CSSCCBCCGGG
T ss_pred -----------------------CCCeeeccccHHHHHHHHHHHHhCCCC----CceeEecCCC--ccccccCHHHH
Confidence 112357899999999999999987644 3578999876 55555555444
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=236.70 Aligned_cols=236 Identities=15% Similarity=0.150 Sum_probs=176.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcch-HHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNS-RERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~-~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++|+|||||||||||++|++.|++. +.+|++++|....... .++++++ ...+++++.||
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~--g~~V~~l~R~~~~~~~~~~~~~~l-----------------~~~~v~~~~~D 68 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDA--HRPTYILARPGPRSPSKAKIFKAL-----------------EDKGAIIVYGL 68 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHT--TCCEEEEECSSCCCHHHHHHHHHH-----------------HHTTCEEEECC
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHC--CCCEEEEECCCCCChhHHHHHHHH-----------------HhCCcEEEEee
Confidence 35679999999999999999999998 5788999998643211 1122221 12579999999
Q ss_pred cCCCCCCCCHHHHHhhcC--CccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCccc
Q psy7542 138 VAVPDLGISAEDRQMLSE--TIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVL 215 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~--~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i 215 (762)
+++++ ++.++++ ++|+|||+||. .|+.++.+++++|++.+.+++||+ |.|+.. .
T Consensus 69 l~d~~------~l~~~~~~~~~d~Vi~~a~~------------~n~~~~~~l~~aa~~~g~v~~~v~--S~~g~~----~ 124 (346)
T 3i6i_A 69 INEQE------AMEKILKEHEIDIVVSTVGG------------ESILDQIALVKAMKAVGTIKRFLP--SEFGHD----V 124 (346)
T ss_dssp TTCHH------HHHHHHHHTTCCEEEECCCG------------GGGGGHHHHHHHHHHHCCCSEEEC--SCCSSC----T
T ss_pred cCCHH------HHHHHHhhCCCCEEEECCch------------hhHHHHHHHHHHHHHcCCceEEee--cccCCC----C
Confidence 99855 7888999 99999999986 289999999999999844999886 444321 2
Q ss_pred ccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCC
Q psy7542 216 EEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPG 295 (762)
Q Consensus 216 ~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pG 295 (762)
+|.. |..|. +.|+.+|+.+|+++++. |++++++|||.++|.....
T Consensus 125 ~e~~---~~~p~--------------------------~~y~~sK~~~e~~l~~~---g~~~tivrpg~~~g~~~~~--- 169 (346)
T 3i6i_A 125 NRAD---PVEPG--------------------------LNMYREKRRVRQLVEES---GIPFTYICCNSIASWPYYN--- 169 (346)
T ss_dssp TTCC---CCTTH--------------------------HHHHHHHHHHHHHHHHT---TCCBEEEECCEESSCCCSC---
T ss_pred CccC---cCCCc--------------------------chHHHHHHHHHHHHHHc---CCCEEEEEecccccccCcc---
Confidence 3321 11111 68999999999999874 8999999999999964321
Q ss_pred CCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC-CCCCcccHHHHHHH
Q psy7542 296 WTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA-NKDFQITWYDIIEN 374 (762)
Q Consensus 296 Widn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s-~~~~piT~~el~~~ 374 (762)
+ ..+ ......+....++++++..+++++++|+|++++.++..+.. .+++||+++ + +.+|+.|+++.
T Consensus 170 ~----~~~---~~~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~l~~~~~----~~~~~~i~g~~--~~~s~~e~~~~ 236 (346)
T 3i6i_A 170 N----IHP---SEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVDDVRT----LNKSVHFRPSC--NCLNINELASV 236 (346)
T ss_dssp C------------CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHHTTCGGG----TTEEEECCCGG--GEECHHHHHHH
T ss_pred c----ccc---ccccCCCceEEEccCCCceEEecCHHHHHHHHHHHHhCccc----cCeEEEEeCCC--CCCCHHHHHHH
Confidence 1 111 11122344456788999999999999999999999987754 368899874 4 78999999999
Q ss_pred HHHhhccCCCC
Q psy7542 375 GKDIARNKVPL 385 (762)
Q Consensus 375 i~~~~G~~~P~ 385 (762)
+.+..|.+.+.
T Consensus 237 ~~~~~g~~~~~ 247 (346)
T 3i6i_A 237 WEKKIGRTLPR 247 (346)
T ss_dssp HHHHHTSCCCE
T ss_pred HHHHHCCCCce
Confidence 99999876543
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=226.64 Aligned_cols=217 Identities=15% Similarity=0.147 Sum_probs=165.8
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPD 142 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~ 142 (762)
+|||||||||||++|+++|++..++.+|++++|...... .+. ..+++++.+|+++++
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~---~~~--------------------~~~~~~~~~D~~d~~ 57 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQ---ALA--------------------AQGITVRQADYGDEA 57 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCH---HHH--------------------HTTCEEEECCTTCHH
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhh---hhh--------------------cCCCeEEEcCCCCHH
Confidence 489999999999999999998733568899999754321 110 136789999999865
Q ss_pred CCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccCCC
Q psy7542 143 LGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPP 222 (762)
Q Consensus 143 LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~~~ 222 (762)
++.++++++|+|||+|+.. ...|+.++.+++++|++. ++++||++||..++. .
T Consensus 58 ------~~~~~~~~~d~vi~~a~~~---------~~~~~~~~~~l~~a~~~~-~~~~~v~~Ss~~~~~-----------~ 110 (286)
T 2zcu_A 58 ------ALTSALQGVEKLLLISSSE---------VGQRAPQHRNVINAAKAA-GVKFIAYTSLLHADT-----------S 110 (286)
T ss_dssp ------HHHHHTTTCSEEEECC-----------------CHHHHHHHHHHHH-TCCEEEEEEETTTTT-----------C
T ss_pred ------HHHHHHhCCCEEEEeCCCC---------chHHHHHHHHHHHHHHHc-CCCEEEEECCCCCCC-----------C
Confidence 7899999999999999852 125899999999999987 789999999986641 0
Q ss_pred CCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCCCC
Q psy7542 223 PVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNING 302 (762)
Q Consensus 223 p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~~g 302 (762)
|..|+.+|+.+|+++++. +++++++||+.++++..
T Consensus 111 ------------------------------~~~y~~sK~~~e~~~~~~---~~~~~ilrp~~~~~~~~------------ 145 (286)
T 2zcu_A 111 ------------------------------PLGLADEHIETEKMLADS---GIVYTLLRNGWYSENYL------------ 145 (286)
T ss_dssp ------------------------------CSTTHHHHHHHHHHHHHH---CSEEEEEEECCBHHHHH------------
T ss_pred ------------------------------cchhHHHHHHHHHHHHHc---CCCeEEEeChHHhhhhH------------
Confidence 147999999999999763 89999999987665421
Q ss_pred chHHHHHH-hcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHhhcc
Q psy7542 303 PTGLLIGA-GKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIARN 381 (762)
Q Consensus 303 p~~li~~~-~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~~G~ 381 (762)
..+... ..+.. ..++++...++++++|+|++++.++.++.. .+++||++++ +++|+.|+++.+.+..|.
T Consensus 146 --~~~~~~~~~~~~--~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~----~g~~~~i~~~--~~~s~~e~~~~i~~~~g~ 215 (286)
T 2zcu_A 146 --ASAPAALEHGVF--IGAAGDGKIASATRADYAAAAARVISEAGH----EGKVYELAGD--SAWTLTQLAAELTKQSGK 215 (286)
T ss_dssp --TTHHHHHHHTEE--EESCTTCCBCCBCHHHHHHHHHHHHHSSSC----TTCEEEECCS--SCBCHHHHHHHHHHHHSS
T ss_pred --HHhHHhhcCCce--eccCCCCccccccHHHHHHHHHHHhcCCCC----CCceEEEeCC--CcCCHHHHHHHHHHHHCC
Confidence 112222 23433 245678889999999999999999987543 4689999988 789999999999999976
Q ss_pred CCC
Q psy7542 382 KVP 384 (762)
Q Consensus 382 ~~P 384 (762)
+.+
T Consensus 216 ~~~ 218 (286)
T 2zcu_A 216 QVT 218 (286)
T ss_dssp CCE
T ss_pred CCc
Confidence 543
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-24 Score=218.38 Aligned_cols=233 Identities=14% Similarity=0.115 Sum_probs=170.6
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+|||||||||||++++++|++.+++.+|+++.|.. +++.++ ..++.++.+|++
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~------~~~~~~------------------~~~~~~~~~D~~ 58 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSA------QGKEKI------------------GGEADVFIGDIT 58 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCH------HHHHHT------------------TCCTTEEECCTT
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCC------Cchhhc------------------CCCeeEEEecCC
Confidence 57899999999999999999999985467999999963 122111 246788999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCcc----------------ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFD----------------DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~----------------~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
+++ ++.++++++|+|||+|+..... +.....+++|+.|+.+++++|++. ++++||++
T Consensus 59 d~~------~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~ 131 (253)
T 1xq6_A 59 DAD------SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-GVKHIVVV 131 (253)
T ss_dssp SHH------HHHHHHTTCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-TCSEEEEE
T ss_pred CHH------HHHHHHcCCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHc-CCCEEEEE
Confidence 765 7889999999999999975321 111246799999999999999987 78899999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeee
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPS 283 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs 283 (762)
||..+..... |..+. ..+.|+.+|+.+|.+++. .+++++++||+
T Consensus 132 SS~~~~~~~~---------~~~~~------------------------~~~~y~~sK~~~e~~~~~---~~i~~~~vrpg 175 (253)
T 1xq6_A 132 GSMGGTNPDH---------PLNKL------------------------GNGNILVWKRKAEQYLAD---SGTPYTIIRAG 175 (253)
T ss_dssp EETTTTCTTC---------GGGGG------------------------GGCCHHHHHHHHHHHHHT---SSSCEEEEEEC
T ss_pred cCccCCCCCC---------ccccc------------------------cchhHHHHHHHHHHHHHh---CCCceEEEecc
Confidence 9987642111 11000 014588899999999875 28999999999
Q ss_pred eeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCC
Q psy7542 284 IIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKD 363 (762)
Q Consensus 284 ~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~ 363 (762)
.|+|+.... ..-.. +....+.+ ...++++++|+|++++.++..+.. .+++||++++..
T Consensus 176 ~v~~~~~~~----~~~~~-----------~~~~~~~~---~~~~~~~~~Dva~~~~~~~~~~~~----~g~~~~i~~~~~ 233 (253)
T 1xq6_A 176 GLLDKEGGV----RELLV-----------GKDDELLQ---TDTKTVPRADVAEVCIQALLFEEA----KNKAFDLGSKPE 233 (253)
T ss_dssp EEECSCSSS----SCEEE-----------ESTTGGGG---SSCCEEEHHHHHHHHHHHTTCGGG----TTEEEEEEECCT
T ss_pred eeecCCcch----hhhhc-----------cCCcCCcC---CCCcEEcHHHHHHHHHHHHcCccc----cCCEEEecCCCc
Confidence 999985321 00000 00000011 124689999999999999987643 468999998631
Q ss_pred -CcccHHHHHHHHHHhhcc
Q psy7542 364 -FQITWYDIIENGKDIARN 381 (762)
Q Consensus 364 -~piT~~el~~~i~~~~G~ 381 (762)
+++|+.|+++.+.+..|+
T Consensus 234 ~~~~s~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 234 GTSTPTKDFKALFSQVTSR 252 (253)
T ss_dssp TTSCCCCCHHHHHHTCCCC
T ss_pred CCCCCHHHHHHHHHHHhCC
Confidence 469999999999988753
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=220.65 Aligned_cols=219 Identities=12% Similarity=0.095 Sum_probs=164.3
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++++++|++. ++.+|++++|...... .....+++++.+|++++
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~-~g~~V~~~~R~~~~~~-----------------------~~~~~~v~~~~~D~~d~ 56 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIAN-HIDHFHIGVRNVEKVP-----------------------DDWRGKVSVRQLDYFNQ 56 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT-TCTTEEEEESSGGGSC-----------------------GGGBTTBEEEECCTTCH
T ss_pred CEEEEEcCCchHHHHHHHHHhhC-CCCcEEEEECCHHHHH-----------------------HhhhCCCEEEEcCCCCH
Confidence 57999999999999999998876 3568899999754211 11235799999999986
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccCC
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYP 221 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~~ 221 (762)
+ ++..+++++|+|||+|+..... ..|+.++.+++++|++. ++++||++||......
T Consensus 57 ~------~l~~~~~~~d~vi~~a~~~~~~-------~~~~~~~~~l~~aa~~~-gv~~iv~~Ss~~~~~~---------- 112 (289)
T 3e48_A 57 E------SMVEAFKGMDTVVFIPSIIHPS-------FKRIPEVENLVYAAKQS-GVAHIIFIGYYADQHN---------- 112 (289)
T ss_dssp H------HHHHHTTTCSEEEECCCCCCSH-------HHHHHHHHHHHHHHHHT-TCCEEEEEEESCCSTT----------
T ss_pred H------HHHHHHhCCCEEEEeCCCCccc-------hhhHHHHHHHHHHHHHc-CCCEEEEEcccCCCCC----------
Confidence 5 8999999999999999975432 34899999999999997 7899999999532110
Q ss_pred CCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCCC
Q psy7542 222 PPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNIN 301 (762)
Q Consensus 222 ~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~~ 301 (762)
.| ..+...+..+|..+.+. |++++++||+.++|+..
T Consensus 113 ~~------------------------------~~~~~~~~~~e~~~~~~---g~~~~ilrp~~~~~~~~----------- 148 (289)
T 3e48_A 113 NP------------------------------FHMSPYFGYASRLLSTS---GIDYTYVRMAMYMDPLK----------- 148 (289)
T ss_dssp CC------------------------------STTHHHHHHHHHHHHHH---CCEEEEEEECEESTTHH-----------
T ss_pred CC------------------------------CccchhHHHHHHHHHHc---CCCEEEEeccccccccH-----------
Confidence 01 11112223455555443 99999999999987521
Q ss_pred CchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHhhcc
Q psy7542 302 GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIARN 381 (762)
Q Consensus 302 gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~~G~ 381 (762)
..+.....+.. ...+.++...++++++|+|++++.++..+.. .+++||++ + .++|+.|+++.+.+..|.
T Consensus 149 ---~~~~~~~~~~~-~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~----~g~~~~~~-~--~~~s~~e~~~~~~~~~g~ 217 (289)
T 3e48_A 149 ---PYLPELMNMHK-LIYPAGDGRINYITRNDIARGVIAIIKNPDT----WGKRYLLS-G--YSYDMKELAAILSEASGT 217 (289)
T ss_dssp ---HHHHHHHHHTE-ECCCCTTCEEEEECHHHHHHHHHHHHHCGGG----TTCEEEEC-C--EEEEHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHCCC-EecCCCCceeeeEEHHHHHHHHHHHHcCCCc----CCceEEeC-C--CcCCHHHHHHHHHHHHCC
Confidence 12222222222 2345678889999999999999999988764 36899999 8 899999999999999986
Q ss_pred CC
Q psy7542 382 KV 383 (762)
Q Consensus 382 ~~ 383 (762)
+.
T Consensus 218 ~~ 219 (289)
T 3e48_A 218 EI 219 (289)
T ss_dssp CC
T ss_pred ce
Confidence 54
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=213.16 Aligned_cols=215 Identities=11% Similarity=0.064 Sum_probs=152.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|+++ +.+|++++|... ++.++ ...+++++.+|++++
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~------~~~~~-----------------~~~~~~~~~~D~~d~ 55 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRR--GHEVLAVVRDPQ------KAADR-----------------LGATVATLVKEPLVL 55 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHH------HHHHH-----------------TCTTSEEEECCGGGC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHC--CCEEEEEEeccc------ccccc-----------------cCCCceEEecccccc
Confidence 57999999999999999999999 678999999642 22221 125789999999998
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc-----ccc
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK-----VLE 216 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~-----~i~ 216 (762)
+ + ..++++|+|||+|+...... ...+|+.++.+++++|++. + ++||++||+.+..... ..+
T Consensus 56 ~------~--~~~~~~d~vi~~ag~~~~~~----~~~~n~~~~~~l~~a~~~~-~-~~~v~~SS~~~~~~~~~~~~~~~~ 121 (224)
T 3h2s_A 56 T------E--ADLDSVDAVVDALSVPWGSG----RGYLHLDFATHLVSLLRNS-D-TLAVFILGSASLAMPGADHPMILD 121 (224)
T ss_dssp C------H--HHHTTCSEEEECCCCCTTSS----CTHHHHHHHHHHHHTCTTC-C-CEEEEECCGGGSBCTTCSSCGGGG
T ss_pred c------H--hhcccCCEEEECCccCCCcc----hhhHHHHHHHHHHHHHHHc-C-CcEEEEecceeeccCCCCcccccc
Confidence 7 3 56689999999999862222 2467999999999999987 5 8999999974432111 122
Q ss_pred cccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCCCC
Q psy7542 217 EKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPG 295 (762)
Q Consensus 217 E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~pG 295 (762)
|...+.| .+.|+.+|+.+|.+ ....+. +++++++||+.|+|+.. ..+
T Consensus 122 ~~~~~~~-----------------------------~~~y~~sK~~~e~~-~~~~~~~~i~~~ivrp~~v~g~~~--~~~ 169 (224)
T 3h2s_A 122 FPESAAS-----------------------------QPWYDGALYQYYEY-QFLQMNANVNWIGISPSEAFPSGP--ATS 169 (224)
T ss_dssp CCGGGGG-----------------------------STTHHHHHHHHHHH-HHHTTCTTSCEEEEEECSBCCCCC--CCC
T ss_pred CCCCCcc-----------------------------chhhHHHHHHHHHH-HHHHhcCCCcEEEEcCccccCCCc--ccC
Confidence 2211111 26899999999955 444333 99999999999999832 111
Q ss_pred CCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHH
Q psy7542 296 WTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWY 369 (762)
Q Consensus 296 Widn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~ 369 (762)
+. .....+ ..+....++++++|+|++++.++.++.. .+++|++++. ++..+.
T Consensus 170 ~~------------~~~~~~----~~~~~~~~~i~~~DvA~~~~~~l~~~~~----~g~~~~~~~~--~~~~~~ 221 (224)
T 3h2s_A 170 YV------------AGKDTL----LVGEDGQSHITTGNMALAILDQLEHPTA----IRDRIVVRDA--DLEHHH 221 (224)
T ss_dssp EE------------EESSBC----CCCTTSCCBCCHHHHHHHHHHHHHSCCC----TTSEEEEEEC--C-----
T ss_pred ce------------eccccc----ccCCCCCceEeHHHHHHHHHHHhcCccc----cCCEEEEecC--cchhcc
Confidence 10 000010 1234457899999999999999998766 4789999987 544443
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=211.62 Aligned_cols=216 Identities=11% Similarity=0.035 Sum_probs=142.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|+++ +.+|++++|... ++.++ ..+++++.+|++++
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~------~~~~~------------------~~~~~~~~~D~~d~ 54 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNR--GHEVTAIVRNAG------KITQT------------------HKDINILQKDIFDL 54 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCSH------HHHHH------------------CSSSEEEECCGGGC
T ss_pred CeEEEEcCCchhHHHHHHHHHhC--CCEEEEEEcCch------hhhhc------------------cCCCeEEeccccCh
Confidence 57999999999999999999998 689999999742 12111 15789999999998
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc---ccccc
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK---VLEEK 218 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~---~i~E~ 218 (762)
+ + +.+.++|+|||+|+..... ...|+.++.+++++|++. +.++||++||..+..... ...|+
T Consensus 55 ~------~--~~~~~~d~vi~~ag~~~~~------~~~~~~~~~~l~~a~~~~-~~~~~v~~SS~~~~~~~~~~~~~~~~ 119 (221)
T 3ew7_A 55 T------L--SDLSDQNVVVDAYGISPDE------AEKHVTSLDHLISVLNGT-VSPRLLVVGGAASLQIDEDGNTLLES 119 (221)
T ss_dssp C------H--HHHTTCSEEEECCCSSTTT------TTSHHHHHHHHHHHHCSC-CSSEEEEECCCC--------------
T ss_pred h------h--hhhcCCCEEEECCcCCccc------cchHHHHHHHHHHHHHhc-CCceEEEEecceEEEcCCCCcccccc
Confidence 7 3 5668999999999984322 456999999999999987 688999999985533221 12221
Q ss_pred cCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHH-HcCCCEEEEeeeeeccCCCCCCCCCC
Q psy7542 219 TYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYM-EAGMPCMILRPSIIIPIWKDPLPGWT 297 (762)
Q Consensus 219 ~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~-~~glpv~IvRPs~V~G~~~eP~pGWi 297 (762)
....| .+.|+.+|..+|.+..... ..+++++++||+.|+|+.. ..+.
T Consensus 120 ~~~~~-----------------------------~~~y~~~k~~~e~~~~~~~~~~gi~~~ivrp~~v~g~~~--~~~~- 167 (221)
T 3ew7_A 120 KGLRE-----------------------------APYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMFEPGE--RTGD- 167 (221)
T ss_dssp ----------------------------------CCCSCCHHHHHHHHHHHHTTTTTSCEEEEECSSCCCCC--------
T ss_pred CCCCC-----------------------------HHHHHHHHHHHHHHHHHHhhccCccEEEEeCcceecCCC--ccCc-
Confidence 11111 1579999999999733222 2399999999999999721 1110
Q ss_pred CCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHH
Q psy7542 298 DNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYD 370 (762)
Q Consensus 298 dn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~e 370 (762)
+ . . .+....+.+++ .++++++|+|++++.++.++.. .+++||++++ .+.+..|
T Consensus 168 --------~-~-~-~~~~~~~~~~~---~~~i~~~Dva~~~~~~l~~~~~----~g~~~~~~~~--~~~~~~~ 220 (221)
T 3ew7_A 168 --------Y-Q-I-GKDHLLFGSDG---NSFISMEDYAIAVLDEIERPNH----LNEHFTVAGK--LEHHHHH 220 (221)
T ss_dssp ------------------------------CCCHHHHHHHHHHHHHSCSC----TTSEEECCC----------
T ss_pred --------e-E-e-ccccceecCCC---CceEeHHHHHHHHHHHHhCccc----cCCEEEECCC--Ccccccc
Confidence 0 0 0 11111222222 3699999999999999998776 5799999988 5555543
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-23 Score=211.37 Aligned_cols=207 Identities=16% Similarity=0.079 Sum_probs=157.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+|+|||||||||||++++++|++++...+|++++|.... ...+++++.+|++
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~---------------------------~~~~~~~~~~D~~ 56 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA---------------------------EHPRLDNPVGPLA 56 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC---------------------------CCTTEECCBSCHH
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc---------------------------cCCCceEEecccc
Confidence 4689999999999999999999999421289999997542 1246788899998
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEK 218 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~ 218 (762)
+++ ++.+++ +|+|||+|+.... ..+.+..+++|+.++.+++++|++. ++++||++||..++..
T Consensus 57 ~~~------~~~~~~--~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~~v~~Ss~~~~~~------- 120 (215)
T 2a35_A 57 ELL------PQLDGS--IDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEM-GARHYLVVSALGADAK------- 120 (215)
T ss_dssp HHG------GGCCSC--CSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCTTCCTT-------
T ss_pred CHH------HHHHhh--hcEEEECeeeccccCCCHHHHHHhhHHHHHHHHHHHHHc-CCCEEEEECCcccCCC-------
Confidence 765 455555 9999999997643 2456788999999999999999987 7889999999876532
Q ss_pred cCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCC-EEEEeeeeeccCCCCCCCCCC
Q psy7542 219 TYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMP-CMILRPSIIIPIWKDPLPGWT 297 (762)
Q Consensus 219 ~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glp-v~IvRPs~V~G~~~eP~pGWi 297 (762)
| ++.|+.+|+.+|++++.. +++ ++++||+.++|+...+ .+.
T Consensus 121 ----~-----------------------------~~~y~~sK~~~e~~~~~~---~~~~~~~vrp~~v~g~~~~~--~~~ 162 (215)
T 2a35_A 121 ----S-----------------------------SIFYNRVKGELEQALQEQ---GWPQLTIARPSLLFGPREEF--RLA 162 (215)
T ss_dssp ----C-----------------------------SSHHHHHHHHHHHHHTTS---CCSEEEEEECCSEESTTSCE--EGG
T ss_pred ----C-----------------------------ccHHHHHHHHHHHHHHHc---CCCeEEEEeCceeeCCCCcc--hHH
Confidence 1 168999999999999864 899 9999999999986431 111
Q ss_pred CCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHH
Q psy7542 298 DNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWY 369 (762)
Q Consensus 298 dn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~ 369 (762)
. .+.....+ + ++ ...++++++|+|++++.++.++. +++||++++ +++++.
T Consensus 163 ~----------~~~~~~~~-~-~~--~~~~~i~~~Dva~~~~~~~~~~~------~~~~~i~~~--~~~~~~ 212 (215)
T 2a35_A 163 E----------ILAAPIAR-I-LP--GKYHGIEACDLARALWRLALEEG------KGVRFVESD--ELRKLG 212 (215)
T ss_dssp G----------GTTCCCC--------CHHHHHHHHHHHHHHHHHHTCCC------SEEEEEEHH--HHHHHH
T ss_pred H----------HHHHhhhh-c-cC--CCcCcEeHHHHHHHHHHHHhcCC------CCceEEcHH--HHHHhh
Confidence 1 11111111 1 12 26799999999999999997653 479999987 655554
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=208.22 Aligned_cols=209 Identities=20% Similarity=0.179 Sum_probs=156.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc--EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV--KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v--~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
+++|+|||||||||||++++++|++. +. +|++++|....... ....++.++.+
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~--G~~~~V~~~~r~~~~~~~-----------------------~~~~~~~~~~~ 70 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQ--GLFSKVTLIGRRKLTFDE-----------------------EAYKNVNQEVV 70 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHH--TCCSEEEEEESSCCCCCS-----------------------GGGGGCEEEEC
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcC--CCCCEEEEEEcCCCCccc-----------------------cccCCceEEec
Confidence 47899999999999999999999999 55 89999997643210 01246889999
Q ss_pred ecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccc
Q psy7542 137 DVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLE 216 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~ 216 (762)
|+++++ ++.++++++|+|||+|+........+..+++|+.|+.+++++|++. ++++||++||..++...
T Consensus 71 D~~d~~------~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~-~~~~iv~~SS~~~~~~~---- 139 (242)
T 2bka_A 71 DFEKLD------DYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAG-GCKHFNLLSSKGADKSS---- 139 (242)
T ss_dssp CGGGGG------GGGGGGSSCSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCTTCCTTC----
T ss_pred CcCCHH------HHHHHhcCCCEEEECCCcccccCCcccceeeeHHHHHHHHHHHHHC-CCCEEEEEccCcCCCCC----
Confidence 999876 6888889999999999976555556778999999999999999987 67899999998765310
Q ss_pred cccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCC-CEEEEeeeeeccCCCCCCCC
Q psy7542 217 EKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGM-PCMILRPSIIIPIWKDPLPG 295 (762)
Q Consensus 217 E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~gl-pv~IvRPs~V~G~~~eP~pG 295 (762)
++.|+.+|+.+|.+++.. ++ +++++|||.|+|+...+.
T Consensus 140 ------------------------------------~~~Y~~sK~~~e~~~~~~---~~~~~~~vrpg~v~~~~~~~~-- 178 (242)
T 2bka_A 140 ------------------------------------NFLYLQVKGEVEAKVEEL---KFDRYSVFRPGVLLCDRQESR-- 178 (242)
T ss_dssp ------------------------------------SSHHHHHHHHHHHHHHTT---CCSEEEEEECCEEECTTGGGS--
T ss_pred ------------------------------------cchHHHHHHHHHHHHHhc---CCCCeEEEcCceecCCCCCCc--
Confidence 167999999999998765 78 599999999999853210
Q ss_pred CCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 296 WTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 296 Widn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
....+..... +..+.. .....+++++|+|++++.++.++.. .+.+++.+
T Consensus 179 ------~~~~~~~~~~-~~~~~~----~~~~~~~~~~dva~~~~~~~~~~~~-----~~~~~~~~ 227 (242)
T 2bka_A 179 ------PGEWLVRKFF-GSLPDS----WASGHSVPVVTVVRAMLNNVVRPRD-----KQMELLEN 227 (242)
T ss_dssp ------HHHHHHHHHH-CSCCTT----GGGGTEEEHHHHHHHHHHHHTSCCC-----SSEEEEEH
T ss_pred ------HHHHHHHHhh-cccCcc----ccCCcccCHHHHHHHHHHHHhCccc-----cCeeEeeH
Confidence 0111222221 211111 1123589999999999999987654 35666644
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=214.99 Aligned_cols=242 Identities=10% Similarity=0.129 Sum_probs=170.6
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
.|+|||||||||+|++++++|++. +.+|++++|....... ++.+.+. .....+++++.+|+++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~-~~~~~~~--------------~~~~~~~~~~~~D~~d 66 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISL--GHPTYVLFRPEVVSNI-DKVQMLL--------------YFKQLGAKLIEASLDD 66 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCSCCSSCH-HHHHHHH--------------HHHTTTCEEECCCSSC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC--CCcEEEEECCCcccch-hHHHHHH--------------HHHhCCeEEEeCCCCC
Confidence 578999999999999999999998 5788999998654211 1221110 0012478999999998
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccC
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTY 220 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~ 220 (762)
++ ++.++++++|+|||+|+..... .|+.++.+++++|++.+++++||+ |.|+..... .
T Consensus 67 ~~------~l~~~~~~~d~vi~~a~~~~~~--------~~~~~~~~l~~aa~~~g~v~~~v~--S~~g~~~~~-~----- 124 (313)
T 1qyd_A 67 HQ------RLVDALKQVDVVISALAGGVLS--------HHILEQLKLVEAIKEAGNIKRFLP--SEFGMDPDI-M----- 124 (313)
T ss_dssp HH------HHHHHHTTCSEEEECCCCSSSS--------TTTTTHHHHHHHHHHSCCCSEEEC--SCCSSCTTS-C-----
T ss_pred HH------HHHHHHhCCCEEEECCccccch--------hhHHHHHHHHHHHHhcCCCceEEe--cCCcCCccc-c-----
Confidence 65 7899999999999999976432 378899999999999833899985 444422111 0
Q ss_pred CCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCC
Q psy7542 221 PPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNI 300 (762)
Q Consensus 221 ~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~ 300 (762)
..+..| ..+.| .+|+.+|+++++. |++++++||+.+++........
T Consensus 125 ~~~~~p-------------------------~~~~y-~sK~~~e~~~~~~---g~~~~ilrp~~~~~~~~~~~~~----- 170 (313)
T 1qyd_A 125 EHALQP-------------------------GSITF-IDKRKVRRAIEAA---SIPYTYVSSNMFAGYFAGSLAQ----- 170 (313)
T ss_dssp CCCCSS-------------------------TTHHH-HHHHHHHHHHHHT---TCCBCEEECCEEHHHHTTTSSC-----
T ss_pred ccCCCC-------------------------CcchH-HHHHHHHHHHHhc---CCCeEEEEeceecccccccccc-----
Confidence 011111 01468 9999999999753 8999999999998853221110
Q ss_pred CCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHhhc
Q psy7542 301 NGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIAR 380 (762)
Q Consensus 301 ~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~~G 380 (762)
... .....+....++++++...++++++|+|++++.++.++.. .+++|+++++. +.+|+.|+++.+.+..|
T Consensus 171 --~~~--~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~----~~~~~~~~g~~-~~~s~~e~~~~~~~~~g 241 (313)
T 1qyd_A 171 --LDG--HMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQT----LNKTMYIRPPM-NILSQKEVIQIWERLSE 241 (313)
T ss_dssp --TTC--CSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGG----SSSEEECCCGG-GEEEHHHHHHHHHHHHT
T ss_pred --ccc--cccCCCCeEEEeCCCCceEEEEEHHHHHHHHHHHHhCccc----CCceEEEeCCC-CccCHHHHHHHHHHhcC
Confidence 000 0001222234567788899999999999999999987643 35677776431 68999999999999998
Q ss_pred cCCC
Q psy7542 381 NKVP 384 (762)
Q Consensus 381 ~~~P 384 (762)
.+.+
T Consensus 242 ~~~~ 245 (313)
T 1qyd_A 242 QNLD 245 (313)
T ss_dssp CCCE
T ss_pred CCCc
Confidence 6643
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-22 Score=218.96 Aligned_cols=232 Identities=16% Similarity=0.099 Sum_probs=169.8
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee-c
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD-V 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD-l 138 (762)
++|+|||||||||||++|+++|++. +.+|++++|....... +.+. ...+++++.+| +
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~-~~l~-------------------~~~~v~~v~~D~l 61 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAV--GHHVRAQVHSLKGLIA-EELQ-------------------AIPNVTLFQGPLL 61 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHT--TCCEEEEESCSCSHHH-HHHH-------------------TSTTEEEEESCCT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCCChhhH-HHHh-------------------hcCCcEEEECCcc
Confidence 4688999999999999999999998 6788999997654210 1110 01368899999 9
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCC-ccEEEEEeCCcccCCCccccc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIH-LQLFVYVSTAYCHPKEKVLEE 217 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~-lk~fV~vSSay~~~~~~~i~E 217 (762)
++++ ++.++++++|+|||+|+.... ..|+.+ ++++++|++. + +++|||+||.++..
T Consensus 62 ~d~~------~l~~~~~~~d~Vi~~a~~~~~--------~~~~~~-~~l~~aa~~~-g~v~~~V~~SS~~~~~------- 118 (352)
T 1xgk_A 62 NNVP------LMDTLFEGAHLAFINTTSQAG--------DEIAIG-KDLADAAKRA-GTIQHYIYSSMPDHSL------- 118 (352)
T ss_dssp TCHH------HHHHHHTTCSEEEECCCSTTS--------CHHHHH-HHHHHHHHHH-SCCSEEEEEECCCGGG-------
T ss_pred CCHH------HHHHHHhcCCEEEEcCCCCCc--------HHHHHH-HHHHHHHHHc-CCccEEEEeCCccccc-------
Confidence 8765 788899999999999975421 247776 9999999987 6 89999999986210
Q ss_pred ccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCC
Q psy7542 218 KTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWT 297 (762)
Q Consensus 218 ~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWi 297 (762)
+.. ..++.|..||+.+|+++++. +++++|+||+ +||+....
T Consensus 119 --~~~----------------------------~~~~~y~~sK~~~E~~~~~~---gi~~~ivrpg-~~g~~~~~----- 159 (352)
T 1xgk_A 119 --YGP----------------------------WPAVPMWAPKFTVENYVRQL---GLPSTFVYAG-IYNNNFTS----- 159 (352)
T ss_dssp --TSS----------------------------CCCCTTTHHHHHHHHHHHTS---SSCEEEEEEC-EEGGGCBS-----
T ss_pred --cCC----------------------------CCCccHHHHHHHHHHHHHHc---CCCEEEEecc-eecCCchh-----
Confidence 000 11267999999999999874 8999999988 56764321
Q ss_pred CCCCCchHHHH-H-HhcCCeE-EEeeCCCcccccccH-HHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHH
Q psy7542 298 DNINGPTGLLI-G-AGKGIIR-TMYCDYSTCADFLPV-DVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIE 373 (762)
Q Consensus 298 dn~~gp~~li~-~-~~~G~l~-~i~gd~~~~~d~VpV-DdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~ 373 (762)
... .++. . ...|... .++++++...+++++ +|+|++++.++.++... ..+++||+++ .++|+.|+++
T Consensus 160 -~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~~~~~~--~~g~~~~l~~---~~~s~~e~~~ 230 (352)
T 1xgk_A 160 -LPY---PLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQK--WNGHRIALTF---ETLSPVQVCA 230 (352)
T ss_dssp -SSC---SSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHHH--HTTCEEEECS---EEECHHHHHH
T ss_pred -ccc---ccccccccCCCceEEeeccCCCCceeeEecHHHHHHHHHHHHhCCchh--hCCeEEEEec---CCCCHHHHHH
Confidence 100 0110 1 1234432 346678889999999 99999999999864210 0268999995 4699999999
Q ss_pred HHHHhhccCCC
Q psy7542 374 NGKDIARNKVP 384 (762)
Q Consensus 374 ~i~~~~G~~~P 384 (762)
.+.+..|.+.+
T Consensus 231 ~i~~~~G~~~~ 241 (352)
T 1xgk_A 231 AFSRALNRRVT 241 (352)
T ss_dssp HHHHHHTSCEE
T ss_pred HHHHHHCCCCc
Confidence 99999976644
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.3e-23 Score=216.54 Aligned_cols=233 Identities=14% Similarity=0.066 Sum_probs=171.4
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|+|||||||||+|++++++|++.+ +.+|++++|....... +.+. ..+++++.+|+++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g-~~~V~~~~R~~~~~~~-~~l~--------------------~~~~~~~~~D~~d 62 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDG-TFKVRVVTRNPRKKAA-KELR--------------------LQGAEVVQGDQDD 62 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHC-SSEEEEEESCTTSHHH-HHHH--------------------HTTCEEEECCTTC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcC-CceEEEEEcCCCCHHH-HHHH--------------------HCCCEEEEecCCC
Confidence 5789999999999999999999982 2799999997643211 1110 1468899999998
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccC
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTY 220 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~ 220 (762)
++ ++..+++++|+|||+|+..... ..+.|+.++.+++++|++. ++++||++||..+... .+
T Consensus 63 ~~------~l~~~~~~~d~vi~~a~~~~~~-----~~~~~~~~~~~~~~aa~~~-gv~~iv~~S~~~~~~~----~~--- 123 (299)
T 2wm3_A 63 QV------IMELALNGAYATFIVTNYWESC-----SQEQEVKQGKLLADLARRL-GLHYVVYSGLENIKKL----TA--- 123 (299)
T ss_dssp HH------HHHHHHTTCSEEEECCCHHHHT-----CHHHHHHHHHHHHHHHHHH-TCSEEEECCCCCHHHH----TT---
T ss_pred HH------HHHHHHhcCCEEEEeCCCCccc-----cchHHHHHHHHHHHHHHHc-CCCEEEEEcCcccccc----CC---
Confidence 65 7899999999999999853211 2356889999999999987 7899999877643321 01
Q ss_pred CCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCC
Q psy7542 221 PPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNI 300 (762)
Q Consensus 221 ~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~ 300 (762)
+..++.|..+|+.+|+++++. |++++++||+.++|+... .|...
T Consensus 124 -----------------------------~~~~~~y~~sK~~~e~~~~~~---gi~~~ilrp~~~~~~~~~---~~~~~- 167 (299)
T 2wm3_A 124 -----------------------------GRLAAAHFDGKGEVEEYFRDI---GVPMTSVRLPCYFENLLS---HFLPQ- 167 (299)
T ss_dssp -----------------------------TSCCCHHHHHHHHHHHHHHHH---TCCEEEEECCEEGGGGGT---TTCCE-
T ss_pred -----------------------------CcccCchhhHHHHHHHHHHHC---CCCEEEEeecHHhhhchh---hcCCc-
Confidence 012368999999999999864 899999999999986422 11110
Q ss_pred CCchHHHHHHhcCCeEE-EeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHhh
Q psy7542 301 NGPTGLLIGAGKGIIRT-MYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIA 379 (762)
Q Consensus 301 ~gp~~li~~~~~G~l~~-i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~~ 379 (762)
....|.... ..+.++...++++++|+|++++.++..+... .+++||+++ .++|+.|+++.+.+..
T Consensus 168 --------~~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~---~g~~~~~~g---~~~s~~e~~~~~~~~~ 233 (299)
T 2wm3_A 168 --------KAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPEKY---VGQNIGLST---CRHTAEEYAALLTKHT 233 (299)
T ss_dssp --------ECTTSSSEEECCCCTTSCEEEECGGGHHHHHHHHHHSHHHH---TTCEEECCS---EEECHHHHHHHHHHHH
T ss_pred --------ccCCCCEEEEEecCCCCccceecHHHHHHHHHHHHcChhhh---CCeEEEeee---ccCCHHHHHHHHHHHH
Confidence 011232111 1234677889999999999999998864210 257999985 4699999999999999
Q ss_pred ccCCC
Q psy7542 380 RNKVP 384 (762)
Q Consensus 380 G~~~P 384 (762)
|.+.+
T Consensus 234 g~~~~ 238 (299)
T 2wm3_A 234 RKVVH 238 (299)
T ss_dssp SSCEE
T ss_pred CCCce
Confidence 76543
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=195.57 Aligned_cols=203 Identities=16% Similarity=0.076 Sum_probs=150.9
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+|+|||||||||++++++|++. +.+|+++.|...... .....+++++.+|++
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~l~~~--g~~V~~~~r~~~~~~-----------------------~~~~~~~~~~~~D~~ 56 (206)
T 1hdo_A 2 AVKKIAIFGATGQTGLTTLAQAVQA--GYEVTVLVRDSSRLP-----------------------SEGPRPAHVVVGDVL 56 (206)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCGGGSC-----------------------SSSCCCSEEEESCTT
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHC--CCeEEEEEeChhhcc-----------------------cccCCceEEEEecCC
Confidence 3489999999999999999999998 678999999753210 111357899999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCccccccc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKT 219 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~ 219 (762)
+++ ++.++++++|+|||+|+....... .++|+.++.+++++|++. ++++||++||..++......
T Consensus 57 ~~~------~~~~~~~~~d~vi~~a~~~~~~~~----~~~n~~~~~~~~~~~~~~-~~~~~v~~Ss~~~~~~~~~~---- 121 (206)
T 1hdo_A 57 QAA------DVDKTVAGQDAVIVLLGTRNDLSP----TTVMSEGARNIVAAMKAH-GVDKVVACTSAFLLWDPTKV---- 121 (206)
T ss_dssp SHH------HHHHHHTTCSEEEECCCCTTCCSC----CCHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTSCTTCS----
T ss_pred CHH------HHHHHHcCCCEEEECccCCCCCCc----cchHHHHHHHHHHHHHHh-CCCeEEEEeeeeeccCcccc----
Confidence 765 788899999999999997654222 248999999999999987 78999999999765432110
Q ss_pred CCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCC
Q psy7542 220 YPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDN 299 (762)
Q Consensus 220 ~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn 299 (762)
|. + .+.|+.+|+.+|+++++. +++++++||+.+.... ..++
T Consensus 122 ---~~-~--------------------------~~~y~~~K~~~e~~~~~~---~i~~~~lrp~~~~~~~---~~~~--- 162 (206)
T 1hdo_A 122 ---PP-R--------------------------LQAVTDDHIRMHKVLRES---GLKYVAVMPPHIGDQP---LTGA--- 162 (206)
T ss_dssp ---CG-G--------------------------GHHHHHHHHHHHHHHHHT---CSEEEEECCSEEECCC---CCSC---
T ss_pred ---cc-c--------------------------chhHHHHHHHHHHHHHhC---CCCEEEEeCCcccCCC---CCcc---
Confidence 00 0 168999999999999643 8999999999983221 1111
Q ss_pred CCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 300 INGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 300 ~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
. .....+... .++++++|+|++++.++.++.. .+++||++++
T Consensus 163 -~--------------~~~~~~~~~-~~~i~~~Dva~~~~~~~~~~~~----~g~~~~i~~g 204 (206)
T 1hdo_A 163 -Y--------------TVTLDGRGP-SRVISKHDLGHFMLRCLTTDEY----DGHSTYPSHQ 204 (206)
T ss_dssp -C--------------EEESSSCSS-CSEEEHHHHHHHHHHTTSCSTT----TTCEEEEECC
T ss_pred -e--------------EecccCCCC-CCccCHHHHHHHHHHHhcCccc----cccceeeecc
Confidence 0 000011010 4899999999999999987643 4789999986
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=207.33 Aligned_cols=237 Identities=13% Similarity=0.124 Sum_probs=166.8
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC-CCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK-KNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~-~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
+|+|+|||||||+|++|+++|++. +.+|++++|.. ....+.++.+.+. .+ ...+++++.+|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~~~~~~~------~l--------~~~~v~~v~~D~~ 65 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKA--GNPTYALVRKTITAANPETKEELID------NY--------QSLGVILLEGDIN 65 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHH--TCCEEEEECCSCCSSCHHHHHHHHH------HH--------HHTTCEEEECCTT
T ss_pred CcEEEEECCCchHHHHHHHHHHhC--CCcEEEEECCCcccCChHHHHHHHH------HH--------HhCCCEEEEeCCC
Confidence 578999999999999999999999 56789999986 2221102222110 00 0146889999999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCccccccc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKT 219 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~ 219 (762)
+++ ++..+++++|+|||+|+... +.++.+++++|++.+++++||+ |.|+... +|.
T Consensus 66 d~~------~l~~~~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~--S~~g~~~----~~~- 120 (307)
T 2gas_A 66 DHE------TLVKAIKQVDIVICAAGRLL------------IEDQVKIIKAIKEAGNVKKFFP--SEFGLDV----DRH- 120 (307)
T ss_dssp CHH------HHHHHHTTCSEEEECSSSSC------------GGGHHHHHHHHHHHCCCSEEEC--SCCSSCT----TSC-
T ss_pred CHH------HHHHHHhCCCEEEECCcccc------------cccHHHHHHHHHhcCCceEEee--cccccCc----ccc-
Confidence 865 78999999999999999653 5678899999998833899883 4444211 111
Q ss_pred CCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCC
Q psy7542 220 YPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDN 299 (762)
Q Consensus 220 ~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn 299 (762)
.+..|. .+.| .+|+.+|+++++. +++++++||+.+++.... ++
T Consensus 121 --~~~~p~-------------------------~~~y-~sK~~~e~~~~~~---~i~~~~lrp~~~~~~~~~---~~--- 163 (307)
T 2gas_A 121 --DAVEPV-------------------------RQVF-EEKASIRRVIEAE---GVPYTYLCCHAFTGYFLR---NL--- 163 (307)
T ss_dssp --CCCTTH-------------------------HHHH-HHHHHHHHHHHHH---TCCBEEEECCEETTTTGG---GT---
T ss_pred --cCCCcc-------------------------hhHH-HHHHHHHHHHHHc---CCCeEEEEcceeeccccc---cc---
Confidence 111110 0479 9999999999764 899999999998875321 10
Q ss_pred CCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHhh
Q psy7542 300 INGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIA 379 (762)
Q Consensus 300 ~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~~ 379 (762)
... . .....+....++++++...++++++|+|++++.++.++.. .+++|++.++. +.+|+.|+++.+.+..
T Consensus 164 -~~~-~--~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~----~~~~~~~~~~~-~~~s~~e~~~~~~~~~ 234 (307)
T 2gas_A 164 -AQL-D--ATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAANDPNT----LNKAVHIRLPK-NYLTQNEVIALWEKKI 234 (307)
T ss_dssp -TCT-T--CSSCCSSEEEEETTSCSEEEEECHHHHHHHHHHHHTCGGG----TTEEEECCCGG-GEEEHHHHHHHHHHHH
T ss_pred -ccc-c--cccCCCCeEEEecCCCcceEEeeHHHHHHHHHHHHcCccc----cCceEEEeCCC-CcCCHHHHHHHHHHHh
Confidence 000 0 0011223334567888899999999999999999987543 35777776431 6799999999999999
Q ss_pred ccCCC
Q psy7542 380 RNKVP 384 (762)
Q Consensus 380 G~~~P 384 (762)
|.+.+
T Consensus 235 g~~~~ 239 (307)
T 2gas_A 235 GKTLE 239 (307)
T ss_dssp TSCCE
T ss_pred CCCCc
Confidence 76644
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=208.63 Aligned_cols=237 Identities=11% Similarity=0.155 Sum_probs=168.1
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|+|+|||||||+|+++++.|++. +.+|++++|........++.+.+. .....+++++.+|+++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~l~R~~~~~~~~~~~~~~~--------------~l~~~~v~~v~~D~~d 67 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDL--GHPTFLLVRESTASSNSEKAQLLE--------------SFKASGANIVHGSIDD 67 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCCCCTTTTHHHHHHHH--------------HHHTTTCEEECCCTTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC--CCCEEEEECCcccccCHHHHHHHH--------------HHHhCCCEEEEeccCC
Confidence 578999999999999999999998 577899999865321112221110 0012578999999998
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccC
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTY 220 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~ 220 (762)
++ ++.++++++|+|||+|+... +.++.+++++|++.+++++||+ |.|+... +|.
T Consensus 68 ~~------~l~~~~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~--S~~g~~~----~~~-- 121 (308)
T 1qyc_A 68 HA------SLVEAVKNVDVVISTVGSLQ------------IESQVNIIKAIKEVGTVKRFFP--SEFGNDV----DNV-- 121 (308)
T ss_dssp HH------HHHHHHHTCSEEEECCCGGG------------SGGGHHHHHHHHHHCCCSEEEC--SCCSSCT----TSC--
T ss_pred HH------HHHHHHcCCCEEEECCcchh------------hhhHHHHHHHHHhcCCCceEee--cccccCc----ccc--
Confidence 65 78888899999999998642 5678899999999833899984 4443211 111
Q ss_pred CCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCC
Q psy7542 221 PPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNI 300 (762)
Q Consensus 221 ~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~ 300 (762)
.+..|. .+.| .+|+.+|+++++. +++++++||+.+++........+
T Consensus 122 -~~~~p~-------------------------~~~y-~sK~~~e~~~~~~---~~~~~~~r~~~~~~~~~~~~~~~---- 167 (308)
T 1qyc_A 122 -HAVEPA-------------------------KSVF-EVKAKVRRAIEAE---GIPYTYVSSNCFAGYFLRSLAQA---- 167 (308)
T ss_dssp -CCCTTH-------------------------HHHH-HHHHHHHHHHHHH---TCCBEEEECCEEHHHHTTTTTCT----
T ss_pred -ccCCcc-------------------------hhHH-HHHHHHHHHHHhc---CCCeEEEEeceeccccccccccc----
Confidence 111111 0468 9999999999764 89999999999988542211100
Q ss_pred CCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHhhc
Q psy7542 301 NGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIAR 380 (762)
Q Consensus 301 ~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~~G 380 (762)
. .....+....++++++...++++++|+|++++.++.++.. .+++|+++++. +.+|+.|+++.+.+..|
T Consensus 168 ----~--~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~----~~~~~~~~g~~-~~~s~~e~~~~~~~~~g 236 (308)
T 1qyc_A 168 ----G--LTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRT----LNKTLYLRLPA-NTLSLNELVALWEKKID 236 (308)
T ss_dssp ----T--CSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGGG----TTEEEECCCGG-GEEEHHHHHHHHHHHTT
T ss_pred ----c--ccCCCCCceEEecCCCceEEEecHHHHHHHHHHHHhCccc----cCeEEEEeCCC-CccCHHHHHHHHHHHhC
Confidence 0 0011233445677888999999999999999998876543 35788876431 68999999999999997
Q ss_pred cCCC
Q psy7542 381 NKVP 384 (762)
Q Consensus 381 ~~~P 384 (762)
.+.+
T Consensus 237 ~~~~ 240 (308)
T 1qyc_A 237 KTLE 240 (308)
T ss_dssp SCCE
T ss_pred CCCc
Confidence 6644
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-21 Score=208.76 Aligned_cols=234 Identities=12% Similarity=0.134 Sum_probs=167.7
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC-CCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK-KNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~-~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.+|+|+|||||||+|++++++|++. +.+|++++|.. ..... ++.+.+. .+ ...+++++.+|+
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~-~~~~~l~------~~--------~~~~v~~v~~D~ 65 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSF--SHPTFIYARPLTPDSTP-SSVQLRE------EF--------RSMGVTIIEGEM 65 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHT--TCCEEEEECCCCTTCCH-HHHHHHH------HH--------HHTTCEEEECCT
T ss_pred cccEEEEEcCCchhHHHHHHHHHhC--CCcEEEEECCcccccCh-HHHHHHH------Hh--------hcCCcEEEEecC
Confidence 3578999999999999999999998 57889999986 32111 1211110 00 124689999999
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEK 218 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~ 218 (762)
++++ ++..+++++|+|||+|+... +.++.+++++|++.+++++|| +|.|+... +|.
T Consensus 66 ~d~~------~l~~a~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v--~S~~g~~~----~~~ 121 (321)
T 3c1o_A 66 EEHE------KMVSVLKQVDIVISALPFPM------------ISSQIHIINAIKAAGNIKRFL--PSDFGCEE----DRI 121 (321)
T ss_dssp TCHH------HHHHHHTTCSEEEECCCGGG------------SGGGHHHHHHHHHHCCCCEEE--CSCCSSCG----GGC
T ss_pred CCHH------HHHHHHcCCCEEEECCCccc------------hhhHHHHHHHHHHhCCccEEe--ccccccCc----ccc
Confidence 9865 79999999999999998642 677899999999973389988 34444211 121
Q ss_pred cCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCC
Q psy7542 219 TYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTD 298 (762)
Q Consensus 219 ~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWid 298 (762)
.+..|. .+.| .+|+.+|+++++. +++++++||+.+++....
T Consensus 122 ---~~~~p~-------------------------~~~y-~sK~~~e~~~~~~---~~~~~~lrp~~~~~~~~~------- 162 (321)
T 3c1o_A 122 ---KPLPPF-------------------------ESVL-EKKRIIRRAIEAA---ALPYTYVSANCFGAYFVN------- 162 (321)
T ss_dssp ---CCCHHH-------------------------HHHH-HHHHHHHHHHHHH---TCCBEEEECCEEHHHHHH-------
T ss_pred ---ccCCCc-------------------------chHH-HHHHHHHHHHHHc---CCCeEEEEeceecccccc-------
Confidence 111110 1479 9999999999754 899999999988774210
Q ss_pred CCCCchHHHH---HHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC-CCCCcccHHHHHHH
Q psy7542 299 NINGPTGLLI---GAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA-NKDFQITWYDIIEN 374 (762)
Q Consensus 299 n~~gp~~li~---~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s-~~~~piT~~el~~~ 374 (762)
.+.. ....+....++++++...++++++|+|++++.++.++.. .+++|++++ + +.+|+.|+++.
T Consensus 163 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~----~g~~~~~~g~~--~~~t~~e~~~~ 230 (321)
T 3c1o_A 163 ------YLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTIKVACDPRC----CNRIVIYRPPK--NIISQNELISL 230 (321)
T ss_dssp ------HHHCCCSSCCTTSCEEEETTSCCEEEEECHHHHHHHHHHHHHCGGG----TTEEEECCCGG--GEEEHHHHHHH
T ss_pred ------ccccccccccccCceEEecCCCcceeEeeHHHHHHHHHHHHhCccc----cCeEEEEeCCC--CcccHHHHHHH
Confidence 1110 011233345677888999999999999999999987654 367888864 4 68999999999
Q ss_pred HHHhhccCCCC
Q psy7542 375 GKDIARNKVPL 385 (762)
Q Consensus 375 i~~~~G~~~P~ 385 (762)
+.+..|.+.++
T Consensus 231 ~~~~~g~~~~~ 241 (321)
T 3c1o_A 231 WEAKSGLSFKK 241 (321)
T ss_dssp HHHHHTSCCCE
T ss_pred HHHHcCCccee
Confidence 99999866543
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.8e-21 Score=204.49 Aligned_cols=227 Identities=15% Similarity=0.148 Sum_probs=165.3
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++|||||||||+|++++++|++. +.+|++++|..... .+.++++. ..+++++.+|++++
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~--g~~V~~l~R~~~~~--~~~~~~l~-----------------~~~v~~v~~Dl~d~ 70 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKL--GHPTYVFTRPNSSK--TTLLDEFQ-----------------SLGAIIVKGELDEH 70 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT--TCCEEEEECTTCSC--HHHHHHHH-----------------HTTCEEEECCTTCH
T ss_pred CeEEEECCCchHHHHHHHHHHHC--CCcEEEEECCCCch--hhHHHHhh-----------------cCCCEEEEecCCCH
Confidence 47999999999999999999998 57889999986421 12222210 14688999999986
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccCC
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYP 221 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~~ 221 (762)
+ ++.++++++|+|||+|+... +.++.+++++|++.+++++||+ |.|+... +|.
T Consensus 71 ~------~l~~a~~~~d~vi~~a~~~~------------~~~~~~l~~aa~~~g~v~~~v~--S~~g~~~----~~~--- 123 (318)
T 2r6j_A 71 E------KLVELMKKVDVVISALAFPQ------------ILDQFKILEAIKVAGNIKRFLP--SDFGVEE----DRI--- 123 (318)
T ss_dssp H------HHHHHHTTCSEEEECCCGGG------------STTHHHHHHHHHHHCCCCEEEC--SCCSSCT----TTC---
T ss_pred H------HHHHHHcCCCEEEECCchhh------------hHHHHHHHHHHHhcCCCCEEEe--eccccCc----ccc---
Confidence 5 79999999999999998642 5678999999999833899984 4443211 111
Q ss_pred CCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCCC
Q psy7542 222 PPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNIN 301 (762)
Q Consensus 222 ~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~~ 301 (762)
.+..|. .+.| .+|+.+|+++++. +++++++||+.+++...
T Consensus 124 ~~~~p~-------------------------~~~y-~sK~~~e~~~~~~---~~~~~~lr~~~~~~~~~----------- 163 (318)
T 2r6j_A 124 NALPPF-------------------------EALI-ERKRMIRRAIEEA---NIPYTYVSANCFASYFI----------- 163 (318)
T ss_dssp CCCHHH-------------------------HHHH-HHHHHHHHHHHHT---TCCBEEEECCEEHHHHH-----------
T ss_pred cCCCCc-------------------------chhH-HHHHHHHHHHHhc---CCCeEEEEcceehhhhh-----------
Confidence 111110 0468 9999999999763 89999999998765310
Q ss_pred CchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC-CCCCcccHHHHHHHHHHhhc
Q psy7542 302 GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA-NKDFQITWYDIIENGKDIAR 380 (762)
Q Consensus 302 gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s-~~~~piT~~el~~~i~~~~G 380 (762)
..++.....+....++++++...++++++|+|++++.++.++.. .+++|++++ + +.+|+.|+++.+.+..|
T Consensus 164 --~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~----~~~~~~~~g~~--~~~s~~e~~~~~~~~~g 235 (318)
T 2r6j_A 164 --NYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVATDPRA----LNRVVIYRPST--NIITQLELISRWEKKIG 235 (318)
T ss_dssp --HHHHCTTCCCSEEEEETTSCCEEEEECHHHHHHHHHHHTTCGGG----TTEEEECCCGG--GEEEHHHHHHHHHHHHT
T ss_pred --hhhccccCCCCceEEecCCCceeeEeeHHHHHHHHHHHhcCccc----cCeEEEecCCC--CccCHHHHHHHHHHHhC
Confidence 01111112334445677888999999999999999999887543 357777764 4 68999999999999997
Q ss_pred cCCC
Q psy7542 381 NKVP 384 (762)
Q Consensus 381 ~~~P 384 (762)
.+.+
T Consensus 236 ~~~~ 239 (318)
T 2r6j_A 236 KKFK 239 (318)
T ss_dssp CCCE
T ss_pred CCCc
Confidence 6644
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=190.68 Aligned_cols=240 Identities=13% Similarity=0.100 Sum_probs=171.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|... +.+++.+ .+ . ...++.++.+|+
T Consensus 14 l~~k~vlITGasggiG~~~a~~l~~~--G~~V~~~~r~~~------~~~~~~~-----~~------~-~~~~~~~~~~D~ 73 (278)
T 2bgk_A 14 LQDKVAIITGGAGGIGETTAKLFVRY--GAKVVIADIADD------HGQKVCN-----NI------G-SPDVISFVHCDV 73 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHH------HHHHHHH-----HH------C-CTTTEEEEECCT
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEcCChh------HHHHHHH-----Hh------C-CCCceEEEECCC
Confidence 57899999999999999999999998 678899988532 1221110 00 0 113789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCcc---------ccHHHHHHHhHHHHHHHHHHHHHc---CCccE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRFD---------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQL 199 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f~---------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~ 199 (762)
++++ +++.+++ ++|+|||+||..... +.++..+++|+.|+.++++++... .+..+
T Consensus 74 ~~~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ 147 (278)
T 2bgk_A 74 TKDE------DVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGS 147 (278)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCe
Confidence 9865 5666554 799999999975321 456778999999999999998763 24579
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 275 (762)
||++||..+..... .+ ...|+.||+..|.+++..+. .|+
T Consensus 148 iv~isS~~~~~~~~--------~~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi 190 (278)
T 2bgk_A 148 IVFTASISSFTAGE--------GV-----------------------------SHVYTATKHAVLGLTTSLCTELGEYGI 190 (278)
T ss_dssp EEEECCGGGTCCCT--------TS-----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred EEEEeeccccCCCC--------CC-----------------------------CcchHHHHHHHHHHHHHHHHHHhhcCc
Confidence 99999986643211 00 15799999999999988765 289
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
+++++|||.|+++...... ............+. +.....+++++|+|++++.++..... ...+++
T Consensus 191 ~v~~v~Pg~v~t~~~~~~~------~~~~~~~~~~~~~~-------~~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~ 255 (278)
T 2bgk_A 191 RVNCVSPYIVASPLLTDVF------GVDSSRVEELAHQA-------ANLKGTLLRAEDVADAVAYLAGDESK--YVSGLN 255 (278)
T ss_dssp EEEEEEESCCSCCCCTTSS------SCCHHHHHHHHHHT-------CSSCSCCCCHHHHHHHHHHHHSGGGT--TCCSCE
T ss_pred EEEEEEeceecchhhhhhc------ccchhHHHHhhhcc-------cccccccCCHHHHHHHHHHHcCcccc--cCCCCE
Confidence 9999999999987543211 11111222221111 11234689999999999998865432 114789
Q ss_pred EEecCCCCCcccHHHHHHHHHHh
Q psy7542 356 INLTANKDFQITWYDIIENGKDI 378 (762)
Q Consensus 356 yNi~s~~~~piT~~el~~~i~~~ 378 (762)
|++.++ ..+++.|+++.+.+.
T Consensus 256 ~~v~gg--~~~~~~e~~~~i~~~ 276 (278)
T 2bgk_A 256 LVIDGG--YTRTNPAFPTALKHG 276 (278)
T ss_dssp EEESTT--GGGCCTHHHHHSCSC
T ss_pred EEECCc--ccccCCccchhhhhh
Confidence 999998 789999999988754
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=194.76 Aligned_cols=239 Identities=11% Similarity=-0.000 Sum_probs=156.3
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++++++|++. +.+|+++.|...... . .+.+|++++
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~--g~~V~~~~r~~~~~~---------------------------~---~~~~D~~~~ 49 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARA--GHTVIGIDRGQADIE---------------------------A---DLSTPGGRE 49 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSSSSEE---------------------------C---CTTSHHHHH
T ss_pred cEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEeCChhHcc---------------------------c---cccCCcccH
Confidence 58999999999999999999998 678999999754210 0 146777765
Q ss_pred CCCCCHHHHHhhcC----CccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEEeCCcccCCCcc
Q psy7542 142 DLGISAEDRQMLSE----TIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVSTAYCHPKEKV 214 (762)
Q Consensus 142 ~LGLs~~~l~~l~~----~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vSSay~~~~~~~ 214 (762)
+ +++.+++ ++|+|||+||......+++..+++|+.|+.+++++|... .+.++||++||..+......
T Consensus 50 ~------~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~ 123 (255)
T 2dkn_A 50 T------AVAAVLDRCGGVLDGLVCCAGVGVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAA 123 (255)
T ss_dssp H------HHHHHHHHHTTCCSEEEECCCCCTTSSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGG
T ss_pred H------HHHHHHHHcCCCccEEEECCCCCCcchhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEecccccccccc
Confidence 4 5665554 899999999987655678899999999999999988764 24579999999876543210
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEeeeeeccCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILRPSIIIPIWK 290 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvRPs~V~G~~~ 290 (762)
.. + ..+.....+++......... ....+.|+.||+.+|.+++.++. .|++++++|||.|+++..
T Consensus 124 ~~---------~--~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~ 191 (255)
T 2dkn_A 124 EL---------P--MVEAMLAGDEARAIELAEQQ-GQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLL 191 (255)
T ss_dssp GC---------H--HHHHHHHTCHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHH
T ss_pred cc---------c--hhhhhcccchhhhhhhcccc-CCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhh
Confidence 00 0 00001111111111111100 01126899999999999988764 289999999999987632
Q ss_pred CCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHH
Q psy7542 291 DPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWY 369 (762)
Q Consensus 291 eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~ 369 (762)
... ... .......... . + ...++++++|+|++++.++...... ..+++||++++ ..+++.
T Consensus 192 ~~~---~~~-----~~~~~~~~~~----~--~-~~~~~~~~~dva~~~~~l~~~~~~~--~~G~~~~v~gg--~~~~~~ 251 (255)
T 2dkn_A 192 QAS---KAD-----PRYGESTRRF----V--A-PLGRGSEPREVAEAIAFLLGPQASF--IHGSVLFVDGG--MDALMR 251 (255)
T ss_dssp HHH---HHC-----TTTHHHHHSC----C--C-TTSSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEESTT--HHHHHC
T ss_pred hhc---ccc-----hhhHHHHHHH----H--H-HhcCCCCHHHHHHHHHHHhCCCccc--ceeeEEEecCC--eEeeee
Confidence 100 000 0000000000 0 1 3457999999999999998765321 14789999988 555543
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=189.59 Aligned_cols=241 Identities=14% Similarity=0.090 Sum_probs=162.0
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+||||||+|+||++++++|++. +.+|+++.|.... ++++. .....++.++.+|++
T Consensus 4 ~~k~vlVTGas~gIG~~~a~~l~~~--G~~V~~~~r~~~~------~~~~~--------------~~~~~~~~~~~~Dv~ 61 (281)
T 3m1a_A 4 SAKVWLVTGASSGFGRAIAEAAVAA--GDTVIGTARRTEA------LDDLV--------------AAYPDRAEAISLDVT 61 (281)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSGGG------GHHHH--------------HHCTTTEEEEECCTT
T ss_pred CCcEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHH------HHHHH--------------HhccCCceEEEeeCC
Confidence 6799999999999999999999998 7789999996532 11111 112357899999999
Q ss_pred CCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHH----HHHHHHHHHHcCCccEEE
Q psy7542 140 VPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRG----TRDMLNLSKQMIHLQLFV 201 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~G----T~~LLelA~~~~~lk~fV 201 (762)
+++ +++.+++ .+|+|||+||.... .+.++..+++|+.| ++.+++.+++. +..+||
T Consensus 62 ~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~~iv 134 (281)
T 3m1a_A 62 DGE------RIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRER-GSGSVV 134 (281)
T ss_dssp CHH------HHHHHHHHHHHHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEE
T ss_pred CHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEE
Confidence 875 5665554 78999999997532 24566789999999 55555555554 568999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+..... + .+.|+.||+..|.+++.++.. |+++
T Consensus 135 ~~sS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 176 (281)
T 3m1a_A 135 NISSFGGQLSFA---------G-----------------------------FSAYSATKAALEQLSEGLADEVAPFGIKV 176 (281)
T ss_dssp EECCGGGTCCCT---------T-----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEcCccccCCCC---------C-----------------------------chHHHHHHHHHHHHHHHHHHHhhccCcEE
Confidence 999986543211 1 158999999999999887653 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
+++|||.|.++...+......... ..+......+.. .........+++++|+|++++.++..... +..|+
T Consensus 177 ~~v~Pg~v~t~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~dva~a~~~~~~~~~~-----~~~~~ 246 (281)
T 3m1a_A 177 LIVEPGAFRTNLFGKGAAYFSEEN--PAYAEKVGPTRQ---LVQGSDGSQPGDPAKAAAAIRLALDTEKT-----PLRLA 246 (281)
T ss_dssp EEEEECCBCCTTTCCCCEEECCBC--TTTHHHHHHHHH---HHHC-----CBCHHHHHHHHHHHHHSSSC-----CSEEE
T ss_pred EEEecCccccccccccccccCCcc--hhhHHHhHHHHH---HHhhccCCCCCCHHHHHHHHHHHHhCCCC-----CeEEe
Confidence 999999998775433211100000 011111100000 00112234578899999999999987654 57899
Q ss_pred ecCCCCCcccHHHHHHHHHHhh
Q psy7542 358 LTANKDFQITWYDIIENGKDIA 379 (762)
Q Consensus 358 i~s~~~~piT~~el~~~i~~~~ 379 (762)
++++ ......+....+.+.+
T Consensus 247 l~s~--~~~~i~g~~~~i~~~~ 266 (281)
T 3m1a_A 247 LGGD--AVDFLTGHLDSVRAEL 266 (281)
T ss_dssp ESHH--HHHHHHHHHHHHHHHH
T ss_pred cCch--HHHHHHHHHHHHHHHH
Confidence 9987 5566666666666554
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=185.80 Aligned_cols=225 Identities=11% Similarity=0.052 Sum_probs=159.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|... +++++. +.++ ....++.++.+|+
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~--G~~V~~~~r~~~------~~~~~~-----~~~~------~~~~~~~~~~~D~ 69 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATA--GASVVVSDINAD------AANHVV-----DEIQ------QLGGQAFACRCDI 69 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTT--TCEEEEEESCHH------HHHHHH-----HHHH------HTTCCEEEEECCT
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEcCCHH------HHHHHH-----HHHH------HhCCceEEEEcCC
Confidence 57899999999999999999999998 678999999632 222211 1111 1135788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~ 202 (762)
++++ +++++++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..+||+
T Consensus 70 ~~~~------~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~ 143 (255)
T 1fmc_A 70 TSEQ------ELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILT 143 (255)
T ss_dssp TCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 9865 5666554 79999999997543 2345678999999999999988531 25689999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~ 278 (762)
+||..+..... + .+.|+.||+..|.+++.++.. +++++
T Consensus 144 ~sS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~ 185 (255)
T 1fmc_A 144 ITSMAAENKNI---------N-----------------------------MTSYASSKAAASHLVRNMAFDLGEKNIRVN 185 (255)
T ss_dssp ECCGGGTCCCT---------T-----------------------------CHHHHHHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred EcchhhcCCCC---------C-----------------------------CcccHHHHHHHHHHHHHHHHHhhhcCcEEE
Confidence 99986543211 1 157999999999999887652 89999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
++|||.|+++.... .. ...+......+. ....+++++|+|++++.++...... ..+++||+
T Consensus 186 ~v~Pg~v~t~~~~~-------~~-~~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~~--~~G~~~~v 246 (255)
T 1fmc_A 186 GIAPGAILTDALKS-------VI-TPEIEQKMLQHT---------PIRRLGQPQDIANAALFLCSPAASW--VSGQILTV 246 (255)
T ss_dssp EEEECSBCSHHHHT-------TC-CHHHHHHHHHTC---------SSCSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEE
T ss_pred EEecccCcchhhhh-------cc-ChHHHHHHHhcC---------CcccCCCHHHHHHHHHHHhCCcccc--CCCcEEEE
Confidence 99999998764221 01 112222222221 1235789999999999988654321 14689999
Q ss_pred cCCCCCccc
Q psy7542 359 TANKDFQIT 367 (762)
Q Consensus 359 ~s~~~~piT 367 (762)
+++ ..+|
T Consensus 247 ~gg--~~~s 253 (255)
T 1fmc_A 247 SGG--GVQE 253 (255)
T ss_dssp STT--SCCC
T ss_pred CCc--eecc
Confidence 988 5554
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-19 Score=181.78 Aligned_cols=218 Identities=14% Similarity=0.130 Sum_probs=155.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|.. ++++++.+ + ..+++++.+|+
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~--G~~V~~~~r~~------~~~~~~~~---------~------~~~~~~~~~D~ 61 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHAS--GAKVVAVTRTN------SDLVSLAK---------E------CPGIEPVCVDL 61 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH---------H------STTCEEEECCT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH---------h------ccCCCcEEecC
Confidence 57899999999999999999999998 67899999863 22222211 0 13567789999
Q ss_pred CCCCCCCCHHHHHhhcC---CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CC-ccEEEEEe
Q psy7542 139 AVPDLGISAEDRQMLSE---TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IH-LQLFVYVS 204 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~---~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~-lk~fV~vS 204 (762)
++++ +++++++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+ ..+||++|
T Consensus 62 ~~~~------~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~s 135 (244)
T 1cyd_A 62 GDWD------ATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVS 135 (244)
T ss_dssp TCHH------HHHHHHTTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred CCHH------HHHHHHHHcCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEc
Confidence 9865 6777665 48999999996542 1346678999999999999988653 13 57999999
Q ss_pred CCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEEE
Q psy7542 205 TAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMIL 280 (762)
Q Consensus 205 Say~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~Iv 280 (762)
|..+..... + ...|+.||+..|.+++.++.. +++++++
T Consensus 136 S~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v 177 (244)
T 1cyd_A 136 SMVAHVTFP---------N-----------------------------LITYSSTKGAMTMLTKAMAMELGPHKIRVNSV 177 (244)
T ss_dssp CGGGTSCCT---------T-----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred chhhcCCCC---------C-----------------------------cchhHHHHHHHHHHHHHHHHHhhhcCeEEEEE
Confidence 986543211 0 157999999999999887653 8999999
Q ss_pred eeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 281 RPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 281 RPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
|||.|+++.... ......++..+..+ ....++++++|+|++++.++...... ..++++++.+
T Consensus 178 ~pg~v~t~~~~~-------~~~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~~--~~G~~~~v~g 239 (244)
T 1cyd_A 178 NPTVVLTDMGKK-------VSADPEFARKLKER---------HPLRKFAEVEDVVNSILFLLSDRSAS--TSGGGILVDA 239 (244)
T ss_dssp EECCBTTHHHHH-------HTCCHHHHHHHHHH---------STTSSCBCHHHHHHHHHHHHSGGGTT--CCSSEEEEST
T ss_pred ecCcccCccccc-------cccCHHHHHHHHhc---------CCccCCCCHHHHHHHHHHHhCchhhc--ccCCEEEECC
Confidence 999998764210 00111222222221 12357999999999999998765321 1467888887
Q ss_pred C
Q psy7542 361 N 361 (762)
Q Consensus 361 ~ 361 (762)
+
T Consensus 240 G 240 (244)
T 1cyd_A 240 G 240 (244)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-19 Score=188.39 Aligned_cols=242 Identities=18% Similarity=0.130 Sum_probs=166.1
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.+++|+||||||||+||++++++|++. +.+|+++.|.. ++++++.+ .+... ...++.++.+|
T Consensus 23 ~l~~k~vlITGasggiG~~la~~L~~~--G~~V~~~~r~~------~~~~~~~~-----~l~~~-----~~~~~~~~~~D 84 (302)
T 1w6u_A 23 SFQGKVAFITGGGTGLGKGMTTLLSSL--GAQCVIASRKM------DVLKATAE-----QISSQ-----TGNKVHAIQCD 84 (302)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHHHH-----HSSCEEEEECC
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HHHHh-----cCCceEEEEeC
Confidence 368999999999999999999999998 67899999863 22222111 11111 13578999999
Q ss_pred cCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc----CCccE
Q psy7542 138 VAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM----IHLQL 199 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~----~~lk~ 199 (762)
+++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+..+
T Consensus 85 l~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~ 158 (302)
T 1w6u_A 85 VRDPD------MVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAA 158 (302)
T ss_dssp TTCHH------HHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCE
Confidence 99865 5555443 56999999996432 2346678999999999998888642 24579
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----gl 275 (762)
||++||.++..... ....|+.||+..|.+++.++.. |+
T Consensus 159 iv~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~~~~~~gi 200 (302)
T 1w6u_A 159 FLSITTIYAETGSG--------------------------------------FVVPSASAKAGVEAMSKSLAAEWGKYGM 200 (302)
T ss_dssp EEEECCTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred EEEEcccccccCCC--------------------------------------CcchhHHHHHHHHHHHHHHHHHhhhcCc
Confidence 99999986642210 0157999999999999887653 89
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
+++++|||.|.++... ...............+. ....+++++|+|++++.++..... ...+++
T Consensus 201 ~v~~v~Pg~v~t~~~~------~~~~~~~~~~~~~~~~~---------p~~~~~~~~dva~~~~~l~~~~~~--~~~G~~ 263 (302)
T 1w6u_A 201 RFNVIQPGPIKTKGAF------SRLDPTGTFEKEMIGRI---------PCGRLGTVEELANLAAFLCSDYAS--WINGAV 263 (302)
T ss_dssp EEEEEEECCBCC------------CCTTSHHHHHHHTTC---------TTSSCBCHHHHHHHHHHHTSGGGT--TCCSCE
T ss_pred EEEEEeeccCCCcchh------hhcccchhhHHHHHhcC---------CcCCCCCHHHHHHHHHHHcCCccc--ccCCCE
Confidence 9999999999876211 01110011111222211 123578999999999998865432 114789
Q ss_pred EEecCCCCCcccHHHHHHHHHHhhc
Q psy7542 356 INLTANKDFQITWYDIIENGKDIAR 380 (762)
Q Consensus 356 yNi~s~~~~piT~~el~~~i~~~~G 380 (762)
|++.++ ..+++.++++.+.+..|
T Consensus 264 ~~v~gg--~~~~~~~~~~~~~~~~g 286 (302)
T 1w6u_A 264 IKFDGG--EEVLISGEFNDLRKVTK 286 (302)
T ss_dssp EEESTT--HHHHHHSTTGGGGGCCH
T ss_pred EEECCC--eeeccCCccccchhhcc
Confidence 999998 77888888777776653
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=178.18 Aligned_cols=202 Identities=11% Similarity=0.046 Sum_probs=138.5
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCC-cEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCEN-VKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~-v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
..|+||||||||+||++|+++|++. + .+|+++.|...... .....+++++.+|+
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~--G~~~V~~~~R~~~~~~-----------------------~~~~~~~~~~~~Dl 76 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADK--QTIKQTLFARQPAKIH-----------------------KPYPTNSQIIMGDV 76 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTC--TTEEEEEEESSGGGSC-----------------------SSCCTTEEEEECCT
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhC--CCceEEEEEcChhhhc-----------------------ccccCCcEEEEecC
Confidence 4578999999999999999999998 5 69999999753211 11235789999999
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEK 218 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~ 218 (762)
++++ ++.++++++|+|||+|+...+ ..+++++++++++. ++++||++||..++.......
T Consensus 77 ~d~~------~~~~~~~~~D~vv~~a~~~~~-----------~~~~~~~~~~~~~~-~~~~iV~iSS~~~~~~~~~~~-- 136 (236)
T 3qvo_A 77 LNHA------ALKQAMQGQDIVYANLTGEDL-----------DIQANSVIAAMKAC-DVKRLIFVLSLGIYDEVPGKF-- 136 (236)
T ss_dssp TCHH------HHHHHHTTCSEEEEECCSTTH-----------HHHHHHHHHHHHHT-TCCEEEEECCCCC----------
T ss_pred CCHH------HHHHHhcCCCEEEEcCCCCch-----------hHHHHHHHHHHHHc-CCCEEEEEecceecCCCCccc--
Confidence 9865 899999999999999986322 13467899999987 789999999987654322100
Q ss_pred cCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCC
Q psy7542 219 TYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTD 298 (762)
Q Consensus 219 ~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWid 298 (762)
.+.+ ...+..+...|..+|..+.. .|++++++|||.|+++.....
T Consensus 137 ---~~~~------------------------~~~~~~~~~~~~~~~~~l~~---~gi~~~~vrPg~i~~~~~~~~----- 181 (236)
T 3qvo_A 137 ---VEWN------------------------NAVIGEPLKPFRRAADAIEA---SGLEYTILRPAWLTDEDIIDY----- 181 (236)
T ss_dssp -----------------------------------CGGGHHHHHHHHHHHT---SCSEEEEEEECEEECCSCCCC-----
T ss_pred ---ccch------------------------hhcccchHHHHHHHHHHHHH---CCCCEEEEeCCcccCCCCcce-----
Confidence 0000 00112344445556666543 299999999999988632210
Q ss_pred CCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 299 NINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 299 n~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
............+++++|+|++++.++.++... .+++|+++++
T Consensus 182 -----------------~~~~~~~~~~~~~i~~~DvA~~i~~ll~~~~~~---~g~~~~i~~~ 224 (236)
T 3qvo_A 182 -----------------ELTSRNEPFKGTIVSRKSVAALITDIIDKPEKH---IGENIGINQP 224 (236)
T ss_dssp -----------------EEECTTSCCSCSEEEHHHHHHHHHHHHHSTTTT---TTEEEEEECS
T ss_pred -----------------EEeccCCCCCCcEECHHHHHHHHHHHHcCcccc---cCeeEEecCC
Confidence 011111111235899999999999999987632 4789999987
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-18 Score=176.98 Aligned_cols=218 Identities=13% Similarity=0.162 Sum_probs=154.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|.. ++++++.+ + ..+++++.+|+
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~--G~~V~~~~r~~------~~~~~~~~---------~------~~~~~~~~~D~ 61 (244)
T 3d3w_A 5 LAGRRVLVTGAGKGIGRGTVQALHAT--GARVVAVSRTQ------ADLDSLVR---------E------CPGIEPVCVDL 61 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH---------H------STTCEEEECCT
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH---------H------cCCCCEEEEeC
Confidence 47899999999999999999999998 67889999863 22332211 0 12567789999
Q ss_pred CCCCCCCCHHHHHhhcC---CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CC-ccEEEEEe
Q psy7542 139 AVPDLGISAEDRQMLSE---TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IH-LQLFVYVS 204 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~---~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~-lk~fV~vS 204 (762)
++++ +++++++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+ ..++|++|
T Consensus 62 ~~~~------~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~s 135 (244)
T 3d3w_A 62 GDWE------ATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVS 135 (244)
T ss_dssp TCHH------HHHHHHTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred CCHH------HHHHHHHHcCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeC
Confidence 9865 6777665 58999999997542 1346678999999999999888653 13 57999999
Q ss_pred CCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEEE
Q psy7542 205 TAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMIL 280 (762)
Q Consensus 205 Say~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~Iv 280 (762)
|..+..... + .+.|+.||+..|.+++.++.. |++++++
T Consensus 136 S~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v 177 (244)
T 3d3w_A 136 SQCSQRAVT---------N-----------------------------HSVYCSTKGALDMLTKVMALELGPHKIRVNAV 177 (244)
T ss_dssp CGGGTSCCT---------T-----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred chhhccCCC---------C-----------------------------CchHHHHHHHHHHHHHHHHHHhcccCeEEEEE
Confidence 986543211 0 157999999999999887652 8999999
Q ss_pred eeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 281 RPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 281 RPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
|||.|.++..... | ...........+ ....++++++|+|++++.++...... ..+++|++.+
T Consensus 178 ~Pg~v~t~~~~~~--~-----~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~~--~~G~~~~v~g 239 (244)
T 3d3w_A 178 NPTVVMTSMGQAT--W-----SDPHKAKTMLNR---------IPLGKFAEVEHVVNAILFLLSDRSGM--TTGSTLPVEG 239 (244)
T ss_dssp EECCBTTTTHHHH--S-----CSTTHHHHHHHT---------CTTCSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEEST
T ss_pred Eeccccccchhhh--c-----cChHHHHHHHhh---------CCCCCCcCHHHHHHHHHHHcCccccC--CCCCEEEECC
Confidence 9999987642210 0 001111222211 12246899999999999998754321 1478999988
Q ss_pred C
Q psy7542 361 N 361 (762)
Q Consensus 361 ~ 361 (762)
+
T Consensus 240 G 240 (244)
T 3d3w_A 240 G 240 (244)
T ss_dssp T
T ss_pred C
Confidence 7
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.6e-18 Score=178.31 Aligned_cols=224 Identities=14% Similarity=0.092 Sum_probs=156.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|... +++++. +.++ ....++.++.+|+
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~--G~~V~~~~r~~~------~~~~~~-----~~l~------~~~~~~~~~~~D~ 71 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEA--GARVIIADLDEA------MATKAV-----EDLR------MEGHDVSSVVMDV 71 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHH------HHHHHH-----HHHH------HTTCCEEEEECCT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHH-----HHHH------hcCCceEEEEecC
Confidence 47899999999999999999999998 678999998632 222211 1111 1135789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccC-c-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVR-F-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~-f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
++++ +++++++ .+|+|||+||... . .+.+...+++|+.|+.++++++... .+..++
T Consensus 72 ~~~~------~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~i 145 (260)
T 3awd_A 72 TNTE------SVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVI 145 (260)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEE
Confidence 9865 5655554 7899999999654 1 1335678999999999999988642 245799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||.++...... .| .+.|+.||+..|.+++.++.. |++
T Consensus 146 v~~sS~~~~~~~~~-------~~-----------------------------~~~Y~~sK~a~~~~~~~l~~e~~~~gi~ 189 (260)
T 3awd_A 146 VAIGSMSGLIVNRP-------QQ-----------------------------QAAYNASKAGVHQYIRSLAAEWAPHGIR 189 (260)
T ss_dssp EEECCGGGTSCCSS-------SC-----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEecchhcccCCC-------CC-----------------------------ccccHHHHHHHHHHHHHHHHHhhhcCeE
Confidence 99999876432110 00 157999999999999887652 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
++++|||.|+++...+ +... ..+......+. ....+++++|+|++++.++...... ..++++
T Consensus 190 v~~v~pg~v~t~~~~~------~~~~-~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~~--~~G~~~ 251 (260)
T 3awd_A 190 ANAVAPTYIETTLTRF------GMEK-PELYDAWIAGT---------PMGRVGQPDEVASVVQFLASDAASL--MTGAIV 251 (260)
T ss_dssp EEEEEECCBCCTTTHH------HHTC-HHHHHHHHHTC---------TTSSCBCHHHHHHHHHHHHSGGGTT--CCSCEE
T ss_pred EEEEEeeeeccchhhc------ccCC-hHHHHHHHhcC---------CcCCCCCHHHHHHHHHHHhCchhcc--CCCcEE
Confidence 9999999998874320 0001 12222222221 1235889999999999988654321 147899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 252 ~v~gg 256 (260)
T 3awd_A 252 NVDAG 256 (260)
T ss_dssp EESTT
T ss_pred EECCc
Confidence 99887
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.3e-18 Score=172.06 Aligned_cols=203 Identities=16% Similarity=0.138 Sum_probs=142.6
Q ss_pred CEEEEECCCChhHHHHHHHHH-HcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 62 KNIFITGASGFVGKVLLEKIL-RTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL-~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
|+||||||||+||++++++|+ +. +.+|+++.|... ++++++. ....++.++.+|+++
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~--g~~V~~~~r~~~-----~~~~~~~---------------~~~~~~~~~~~D~~d 63 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYT--DMHITLYGRQLK-----TRIPPEI---------------IDHERVTVIEGSFQN 63 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHC--CCEEEEEESSHH-----HHSCHHH---------------HTSTTEEEEECCTTC
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcC--CceEEEEecCcc-----ccchhhc---------------cCCCceEEEECCCCC
Confidence 569999999999999999999 66 779999999632 0222211 023578999999998
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccC
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTY 220 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~ 220 (762)
++ ++.++++++|+|||+|+.. |+. ++++++++++. ++++||++||..++......
T Consensus 64 ~~------~~~~~~~~~d~vv~~ag~~------------n~~-~~~~~~~~~~~-~~~~iv~iSs~~~~~~~~~~----- 118 (221)
T 3r6d_A 64 PG------XLEQAVTNAEVVFVGAMES------------GSD-MASIVKALSRX-NIRRVIGVSMAGLSGEFPVA----- 118 (221)
T ss_dssp HH------HHHHHHTTCSEEEESCCCC------------HHH-HHHHHHHHHHT-TCCEEEEEEETTTTSCSCHH-----
T ss_pred HH------HHHHHHcCCCEEEEcCCCC------------Chh-HHHHHHHHHhc-CCCeEEEEeeceecCCCCcc-----
Confidence 65 8899999999999999853 444 89999999986 78899999998765432100
Q ss_pred CCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCC
Q psy7542 221 PPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNI 300 (762)
Q Consensus 221 ~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~ 300 (762)
. .++ .....++.|+.+|..+|.+++.. +++++++|||.|+++... +
T Consensus 119 --------~---~~~------------~~~~~~~~y~~~K~~~e~~~~~~---~i~~~~vrpg~v~~~~~~---~----- 164 (221)
T 3r6d_A 119 --------L---EKW------------TFDNLPISYVQGERQARNVLRES---NLNYTILRLTWLYNDPEX---T----- 164 (221)
T ss_dssp --------H---HHH------------HHHTSCHHHHHHHHHHHHHHHHS---CSEEEEEEECEEECCTTC---C-----
T ss_pred --------c---ccc------------cccccccHHHHHHHHHHHHHHhC---CCCEEEEechhhcCCCCC---c-----
Confidence 0 000 00011238999999999998753 999999999999876211 0
Q ss_pred CCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHh--hcccCCCCCCceEEEecCC
Q psy7542 301 NGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLST--WNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 301 ~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~--~~~~~~~~~~~~iyNi~s~ 361 (762)
..............+++.+|+|++++.++ .++... .++.+.++++
T Consensus 165 -------------~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~~---~~~~~~i~~~ 211 (221)
T 3r6d_A 165 -------------DYELIPEGAQFNDAQVSREAVVKAIFDILHAADETPF---HRTSIGVGEP 211 (221)
T ss_dssp -------------CCEEECTTSCCCCCEEEHHHHHHHHHHHHTCSCCGGG---TTEEEEEECT
T ss_pred -------------ceeeccCCccCCCceeeHHHHHHHHHHHHHhcChhhh---hcceeeecCC
Confidence 01111111111223789999999999999 665431 3567777755
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-18 Score=180.66 Aligned_cols=248 Identities=13% Similarity=0.053 Sum_probs=155.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|.. ++++++.+ .+... .....++.++.+|+
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~~~~~---~~~~~~~~~~~~D~ 67 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFARE--GAKVTITGRHA------ERLEETRQ-----QILAA---GVSEQNVNSVVADV 67 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHHHT---TCCGGGEEEEECCT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HHHhc---ccCCCceeEEeccc
Confidence 47899999999999999999999998 67899999863 22322211 11000 01124688999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccC-----------ccccHHHHHHHhHHHHHHHHHHHHHc---CCc
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVR-----------FDDYMQTYVFLNTRGTRDMLNLSKQM---IHL 197 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~-----------f~~~l~~~~~~NV~GT~~LLelA~~~---~~l 197 (762)
++++ +++++++ ++|+|||+||... ..+.++..+++|+.|+.++++++... .+
T Consensus 68 ~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~- 140 (278)
T 1spx_A 68 TTDA------GQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK- 140 (278)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-
Confidence 9865 5666555 7999999999753 22345678999999999999988753 13
Q ss_pred cEEEEEeCCcc-cCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----
Q psy7542 198 QLFVYVSTAYC-HPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME---- 272 (762)
Q Consensus 198 k~fV~vSSay~-~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~---- 272 (762)
.++|++||..+ .... |. ...|+.||+..|.+++..+.
T Consensus 141 g~iv~isS~~~~~~~~----------~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~ 182 (278)
T 1spx_A 141 GEIVNISSIASGLHAT----------PD----------------------------FPYYSIAKAAIDQYTRNTAIDLIQ 182 (278)
T ss_dssp CEEEEECCTTSSSSCC----------TT----------------------------SHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CeEEEEecccccccCC----------CC----------------------------ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999865 3211 10 14799999999999887764
Q ss_pred cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCC
Q psy7542 273 AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNT 352 (762)
Q Consensus 273 ~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~ 352 (762)
.|++++++|||.|.++.......-................. .....+++++|+|++++.++...... -..
T Consensus 183 ~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---------~p~~~~~~~~dvA~~v~~l~s~~~~~-~~t 252 (278)
T 1spx_A 183 HGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKEC---------VPAGVMGQPQDIAEVIAFLADRKTSS-YII 252 (278)
T ss_dssp GTCEEEEEEECCBCCCC--------------HHHHHHHHHH---------CTTSSCBCHHHHHHHHHHHHCHHHHT-TCC
T ss_pred cCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhc---------CCCcCCCCHHHHHHHHHHHcCccccC-ccc
Confidence 28999999999998764321000000000000001111110 01135789999999999888653310 014
Q ss_pred ceEEEecCCCCCcccHHHHHHHHHHhh
Q psy7542 353 MRVINLTANKDFQITWYDIIENGKDIA 379 (762)
Q Consensus 353 ~~iyNi~s~~~~piT~~el~~~i~~~~ 379 (762)
++++++.++ ..+++.++++.+.+..
T Consensus 253 G~~~~vdgG--~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 253 GHQLVVDGG--SSLIMGLHCQDFAKLL 277 (278)
T ss_dssp SCEEEESTT--GGGC------------
T ss_pred CcEEEECCC--cccccCcccccHHHHh
Confidence 789999998 7899999999887653
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-18 Score=179.47 Aligned_cols=234 Identities=14% Similarity=0.087 Sum_probs=151.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhh-cccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQS-ESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~-~~~~~~kV~~V~GD 137 (762)
+++|+||||||||+||++++++|++. +.+|+++.|... +++++.+. +..... ......++.++.+|
T Consensus 5 ~~~k~vlITGasggiG~~la~~l~~~--G~~V~~~~r~~~------~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~D 71 (264)
T 2pd6_A 5 LRSALALVTGAGSGIGRAVSVRLAGE--GATVAACDLDRA------AAQETVRL-----LGGPGSKEGPPRGNHAAFQAD 71 (264)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHH------HHHHHHHT-----C------------CCEEEECC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChH------HHHHHHHH-----HHhcCccccccCcceEEEEec
Confidence 57899999999999999999999998 678999998632 22222110 000000 00011478899999
Q ss_pred cCCCCCCCCHHHHHhhcCC-------c-cEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CC-cc
Q psy7542 138 VAVPDLGISAEDRQMLSET-------I-HIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IH-LQ 198 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~-------v-DiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~-lk 198 (762)
+++++ ++++++++ + |+|||+||.... .+.++..+++|+.|+.++++++... .+ ..
T Consensus 72 ~~~~~------~~~~~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g 145 (264)
T 2pd6_A 72 VSEAR------AARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRG 145 (264)
T ss_dssp TTSHH------HHHHHHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCE
T ss_pred CCCHH------HHHHHHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCc
Confidence 99865 55555543 4 999999997643 2356678999999999999998763 12 46
Q ss_pred EEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cC
Q psy7542 199 LFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AG 274 (762)
Q Consensus 199 ~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~g 274 (762)
+||++||..+..... ....|+.||+..|.+++..+. .|
T Consensus 146 ~iv~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~g 187 (264)
T 2pd6_A 146 SIINISSIVGKVGNV--------------------------------------GQTNYAASKAGVIGLTQTAARELGRHG 187 (264)
T ss_dssp EEEEECCTHHHHCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred eEEEECChhhccCCC--------------------------------------CChhhHHHHHHHHHHHHHHHHHhhhcC
Confidence 899999985532110 015799999999998887765 28
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
++++++|||.|+++.....+ ..+...+..+ .....+++++|+|++++.++..... ...++
T Consensus 188 i~v~~v~Pg~v~t~~~~~~~---------~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~ 247 (264)
T 2pd6_A 188 IRCNSVLPGFIATPMTQKVP---------QKVVDKITEM---------IPMGHLGDPEDVADVVAFLASEDSG--YITGT 247 (264)
T ss_dssp EEEEEEEECSBCSCC-------------------CTGGG---------CTTCSCBCHHHHHHHHHHHHSGGGT--TCCSC
T ss_pred eEEEEEeeecccccchhhcC---------HHHHHHHHHh---------CCCCCCCCHHHHHHHHHHHcCCccc--CCCCC
Confidence 99999999999887533111 0111111111 1123578999999999998865432 12478
Q ss_pred EEEecCCCCCcccHHHH
Q psy7542 355 VINLTANKDFQITWYDI 371 (762)
Q Consensus 355 iyNi~s~~~~piT~~el 371 (762)
++++.++ ..+++..+
T Consensus 248 ~~~v~gg--~~~~~~~~ 262 (264)
T 2pd6_A 248 SVEVTGG--LFMAENLY 262 (264)
T ss_dssp EEEESTT--C-------
T ss_pred EEEECCC--ceeccccC
Confidence 9999988 55555443
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=181.40 Aligned_cols=225 Identities=15% Similarity=0.100 Sum_probs=156.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.. +++++..+ ....++.++.+|+
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~D~ 63 (259)
T 4e6p_A 6 LEGKSALITGSARGIGRAFAEAYVRE--GATVAIADIDI------ERARQAAA--------------EIGPAAYAVQMDV 63 (259)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH--------------HHCTTEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH--------------HhCCCceEEEeeC
Confidence 57899999999999999999999998 77889998853 23332211 1135688999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc----CCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM----IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~----~~lk~f 200 (762)
++++ +++++++ ++|+|||+||.... .+.++..+++|+.|+.++++++... +.-.++
T Consensus 64 ~~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~i 137 (259)
T 4e6p_A 64 TRQD------SIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKI 137 (259)
T ss_dssp TCHH------HHHHHHHHHHHHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEE
Confidence 9876 5665554 79999999997542 2456778999999999999988643 113589
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... ....|+.||+..|.+++..+.. |++
T Consensus 138 v~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~ 179 (259)
T 4e6p_A 138 INMASQAGRRGEA--------------------------------------LVAIYCATKAAVISLTQSAGLDLIKHRIN 179 (259)
T ss_dssp EEECCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEECChhhccCCC--------------------------------------CChHHHHHHHHHHHHHHHHHHHhhhcCCE
Confidence 9999986643211 0157999999999999887652 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHh---cCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAG---KGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~---~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
+++++||.|.++.... ...++.... .+.......+......+.+++|+|++++.++...... ..+
T Consensus 180 vn~v~PG~v~t~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~L~s~~~~~--itG 247 (259)
T 4e6p_A 180 VNAIAPGVVDGEHWDG----------VDALFARYENRPRGEKKRLVGEAVPFGRMGTAEDLTGMAIFLASAESDY--IVS 247 (259)
T ss_dssp EEEEEECCBCSTTHHH----------HHHHHHHHHTCCTTHHHHHHHHHSTTSSCBCTHHHHHHHHHTTSGGGTT--CCS
T ss_pred EEEEEECCCccchhhh----------hhhhhhhhccCChHHHHHHHhccCCCCCCcCHHHHHHHHHHHhCCccCC--CCC
Confidence 9999999998763210 000111110 0000001112234467899999999999887654331 147
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++++.++
T Consensus 248 ~~i~vdgG 255 (259)
T 4e6p_A 248 QTYNVDGG 255 (259)
T ss_dssp CEEEESTT
T ss_pred CEEEECcC
Confidence 89999988
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-18 Score=175.01 Aligned_cols=205 Identities=15% Similarity=0.117 Sum_probs=151.1
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|+||||||||+||++++++|++. +.+|+++.|... ..++.++.+|+++
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~--G~~V~~~~r~~~-----------------------------~~~~~~~~~D~~~ 50 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKAR--GYRVVVLDLRRE-----------------------------GEDLIYVEGDVTR 50 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHH--TCEEEEEESSCC-----------------------------SSSSEEEECCTTC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEccCcc-----------------------------ccceEEEeCCCCC
Confidence 689999999999999999999999 778999999653 2356789999998
Q ss_pred CCCCCCHHHHHhhcC------CccEEEEcccccCcc-------c----cHHHHHHHhHHHHHHHHHHHHHc-CC------
Q psy7542 141 PDLGISAEDRQMLSE------TIHIVYHIAATVRFD-------D----YMQTYVFLNTRGTRDMLNLSKQM-IH------ 196 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~------~vDiViH~AA~v~f~-------~----~l~~~~~~NV~GT~~LLelA~~~-~~------ 196 (762)
++ +++++++ .+|+|||+|+..... + .++..+++|+.|+.++++++... ..
T Consensus 51 ~~------~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~ 124 (242)
T 1uay_A 51 EE------DVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAE 124 (242)
T ss_dssp HH------HHHHHHHHHHHHSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTT
T ss_pred HH------HHHHHHHHHHhhCCceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCC
Confidence 65 6666665 789999999975422 1 67788999999999999998753 11
Q ss_pred --ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-
Q psy7542 197 --LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA- 273 (762)
Q Consensus 197 --lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~- 273 (762)
..+||++||..+..... ....|+.||+..|.+++..+..
T Consensus 125 ~~~~~iv~~sS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~l~~e~ 166 (242)
T 1uay_A 125 GQRGVIVNTASVAAFEGQI--------------------------------------GQAAYAASKGGVVALTLPAAREL 166 (242)
T ss_dssp SCSEEEEEECCTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCChhhccCCC--------------------------------------CCchhhHHHHHHHHHHHHHHHHH
Confidence 13899999986543210 0157999999999988776652
Q ss_pred ---CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCC
Q psy7542 274 ---GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPG 350 (762)
Q Consensus 274 ---glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~ 350 (762)
|++++++|||.|.++..... +..+......+.. ....+++++|+|++++.++.....
T Consensus 167 ~~~gi~v~~v~Pg~v~t~~~~~~---------~~~~~~~~~~~~~--------~~~~~~~~~dva~~~~~l~~~~~~--- 226 (242)
T 1uay_A 167 AGWGIRVVTVAPGLFDTPLLQGL---------PEKAKASLAAQVP--------FPPRLGRPEEYAALVLHILENPML--- 226 (242)
T ss_dssp GGGTEEEEEEEECSCSSHHHHTS---------CHHHHHHHHTTCC--------SSCSCCCHHHHHHHHHHHHHCTTC---
T ss_pred hhcCcEEEEEEeccCcchhhhcc---------chhHHHHHHhhCC--------CcccCCCHHHHHHHHHHHhcCCCC---
Confidence 89999999999987642211 1112222222211 003478999999999999887333
Q ss_pred CCceEEEecCC
Q psy7542 351 NTMRVINLTAN 361 (762)
Q Consensus 351 ~~~~iyNi~s~ 361 (762)
.++++++.++
T Consensus 227 -~G~~~~v~gG 236 (242)
T 1uay_A 227 -NGEVVRLDGA 236 (242)
T ss_dssp -CSCEEEESTT
T ss_pred -CCcEEEEcCC
Confidence 4789999887
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-17 Score=175.19 Aligned_cols=208 Identities=15% Similarity=0.121 Sum_probs=153.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|..... ...++.++.+|+
T Consensus 26 ~~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~--------------------------~~~~~~~~~~Dv 77 (260)
T 3un1_A 26 NQQKVVVITGASQGIGAGLVRAYRDR--NYRVVATSRSIKPS--------------------------ADPDIHTVAGDI 77 (260)
T ss_dssp TTCCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSCCCC--------------------------SSTTEEEEESCT
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCChhhc--------------------------ccCceEEEEccC
Confidence 57899999999999999999999998 77899999975421 124788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH---cCCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ---MIHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~---~~~lk~fV 201 (762)
++++ +++++++ ++|+|||+||.... .+.++..+++|+.|+.++++++.. ..+..++|
T Consensus 78 ~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv 151 (260)
T 3un1_A 78 SKPE------TADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIV 151 (260)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9876 5665554 79999999997542 245677899999999999998742 12567999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+..... ..+ ...|+.||+..+.+++..+.. |+++
T Consensus 152 ~isS~~~~~~~~-------~~~-----------------------------~~~Y~~sKaa~~~l~~~la~e~~~~gI~v 195 (260)
T 3un1_A 152 SITTSLVDQPMV-------GMP-----------------------------SALASLTKGGLNAVTRSLAMEFSRSGVRV 195 (260)
T ss_dssp EECCTTTTSCBT-------TCC-----------------------------CHHHHHHHHHHHHHHHHHHHHTTTTTEEE
T ss_pred EEechhhccCCC-------CCc-----------------------------cHHHHHHHHHHHHHHHHHHHHhCcCCeEE
Confidence 999976532211 001 157999999999999888763 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
++++||.|.++...+ ........ ......+..++|+|++++.+...... .+++++
T Consensus 196 n~v~PG~v~t~~~~~------------~~~~~~~~---------~~p~~r~~~~~dva~av~~L~~~~~i----tG~~i~ 250 (260)
T 3un1_A 196 NAVSPGVIKTPMHPA------------ETHSTLAG---------LHPVGRMGEIRDVVDAVLYLEHAGFI----TGEILH 250 (260)
T ss_dssp EEEEECCBCCTTSCG------------GGHHHHHT---------TSTTSSCBCHHHHHHHHHHHHHCTTC----CSCEEE
T ss_pred EEEeecCCCCCCCCH------------HHHHHHhc---------cCCCCCCcCHHHHHHHHHHhcccCCC----CCcEEE
Confidence 999999998764221 11111111 12234678899999999988444333 578999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 251 vdGG 254 (260)
T 3un1_A 251 VDGG 254 (260)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9887
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-19 Score=178.35 Aligned_cols=187 Identities=14% Similarity=0.083 Sum_probs=139.9
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+||||||||+||++++++|++. +|+++.|.. ++++++.+ +. .. .++.+|++++
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~----~V~~~~r~~------~~~~~~~~---------~~------~~-~~~~~D~~~~ 54 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH----DLLLSGRRA------GALAELAR---------EV------GA-RALPADLADE 54 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS----EEEEECSCH------HHHHHHHH---------HH------TC-EECCCCTTSH
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC----CEEEEECCH------HHHHHHHH---------hc------cC-cEEEeeCCCH
Confidence 57999999999999999999876 889999853 22222211 00 12 7889999986
Q ss_pred CCCCCHHHHHhhcC---CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC
Q psy7542 142 DLGISAEDRQMLSE---TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK 211 (762)
Q Consensus 142 ~LGLs~~~l~~l~~---~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~ 211 (762)
+ +++.+++ ++|+|||+||.... .+.+...+++|+.|+.++++++++. +..+||++||..+...
T Consensus 55 ~------~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~sS~~~~~~ 127 (207)
T 2yut_A 55 L------EAKALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ-KGARAVFFGAYPRYVQ 127 (207)
T ss_dssp H------HHHHHHHHHCSEEEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE-EEEEEEEECCCHHHHS
T ss_pred H------HHHHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc-CCcEEEEEcChhhccC
Confidence 5 6777776 89999999997542 2456778999999999999999654 5689999999865421
Q ss_pred CcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEEEeeeeecc
Q psy7542 212 EKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMILRPSIIIP 287 (762)
Q Consensus 212 ~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~IvRPs~V~G 287 (762)
.. ..+.|+.||+..|.+++.++.. |++++++|||.|++
T Consensus 128 ~~--------------------------------------~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t 169 (207)
T 2yut_A 128 VP--------------------------------------GFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVAT 169 (207)
T ss_dssp ST--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCS
T ss_pred CC--------------------------------------CcchHHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccC
Confidence 10 0158999999999999887653 89999999998876
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 288 IWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 288 ~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
+... +.+....++++++|+|++++.++.++..
T Consensus 170 ~~~~----------------------------~~~~~~~~~~~~~dva~~~~~~~~~~~~ 201 (207)
T 2yut_A 170 GLWA----------------------------PLGGPPKGALSPEEAARKVLEGLFREPV 201 (207)
T ss_dssp GGGG----------------------------GGTSCCTTCBCHHHHHHHHHHHHC--CC
T ss_pred CCcc----------------------------ccCCCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 5300 0112336899999999999999876543
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=181.11 Aligned_cols=227 Identities=17% Similarity=0.148 Sum_probs=155.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|... ++++++. +.+ .....++.++.+|+
T Consensus 19 ~~~k~vlItGasggiG~~la~~l~~~--G~~v~~~~r~~~-----~~~~~~~-----~~l------~~~~~~~~~~~~D~ 80 (274)
T 1ja9_A 19 LAGKVALTTGAGRGIGRGIAIELGRR--GASVVVNYGSSS-----KAAEEVV-----AEL------KKLGAQGVAIQADI 80 (274)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCH-----HHHHHHH-----HHH------HHTTCCEEEEECCT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEcCCch-----HHHHHHH-----HHH------HhcCCcEEEEEecC
Confidence 57899999999999999999999998 678899998421 2222211 111 11235788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~ 202 (762)
++++ ++.++++ ++|+|||+||.... .+.++..+++|+.|+.++++++... ++ .+||+
T Consensus 81 ~~~~------~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~ 153 (274)
T 1ja9_A 81 SKPS------EVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIIL 153 (274)
T ss_dssp TSHH------HHHHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CEEEE
Confidence 9865 5666554 79999999997542 1345678999999999999998764 12 69999
Q ss_pred EeCCccc-CCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 203 VSTAYCH-PKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 203 vSSay~~-~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
+||..+. ... |. ...|+.||+..|.+++.++.. ++++
T Consensus 154 ~sS~~~~~~~~----------~~----------------------------~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v 195 (274)
T 1ja9_A 154 TSSIAAVMTGI----------PN----------------------------HALYAGSKAAVEGFCRAFAVDCGAKGVTV 195 (274)
T ss_dssp ECCGGGTCCSC----------CS----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred EcChHhccCCC----------CC----------------------------CchHHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 9998664 211 00 157999999999999887652 8999
Q ss_pred EEEeeeeeccCCCCC-----CCCCCCCCCCc-hHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCC
Q psy7542 278 MILRPSIIIPIWKDP-----LPGWTDNINGP-TGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGN 351 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP-----~pGWidn~~gp-~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~ 351 (762)
+++|||.|.++...+ .++.... .+ ......... .....++++++|+|++++.++...... .
T Consensus 196 ~~v~Pg~v~t~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~~dva~~i~~l~~~~~~~--~ 262 (274)
T 1ja9_A 196 NCIAPGGVKTDMFDENSWHYAPGGYKG--MPQEKIDEGLAN---------MNPLKRIGYPADIGRAVSALCQEESEW--I 262 (274)
T ss_dssp EEEEECCBSSHHHHHHGGGTSTTCCTT--CCHHHHHHHHHH---------TSTTSSCBCHHHHHHHHHHHHSGGGTT--C
T ss_pred EEEeeCcccccchhccccccccccccc--CchHHHHHHHHh---------cCCCCCccCHHHHHHHHHHHhCccccc--c
Confidence 999999987653210 0000000 01 111111111 223356899999999999988754321 1
Q ss_pred CceEEEecCC
Q psy7542 352 TMRVINLTAN 361 (762)
Q Consensus 352 ~~~iyNi~s~ 361 (762)
.+++||++++
T Consensus 263 ~G~~~~v~gG 272 (274)
T 1ja9_A 263 NGQVIKLTGG 272 (274)
T ss_dssp CSCEEEESTT
T ss_pred cCcEEEecCC
Confidence 4789999876
|
| >4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=164.12 Aligned_cols=103 Identities=36% Similarity=0.501 Sum_probs=87.4
Q ss_pred CCCccccccceeeecCCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHh
Q psy7542 517 PKENCISVSGYRLIECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKK 596 (762)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (762)
.++++|+.......+.+|+|+||.|+|...+..|.|.||||||..||+ +++
T Consensus 22 ~~~V~Ip~~~~~~~~~~k~y~vY~I~v~~~~~~w~V~RRYsdF~~L~~-----------------------------~L~ 72 (129)
T 4az9_A 22 SMEVYIPSFRYEESDLERGYTVFKIEVLMNGRKHFVEKRYSEFHALHK-----------------------------KLK 72 (129)
T ss_dssp CCEEEEEEEEEECCTTSCCEEEEEEEEEETTEEEEEEEEHHHHHHHHH-----------------------------HHT
T ss_pred eeEEEECcEEEEecCCCCCEEEEEEEEEECCEEEEEEeeHHHHHHHHH-----------------------------HHH
Confidence 345555544444445568999999999999999999999999999998 666
Q ss_pred hhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHHhc
Q psy7542 597 RNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKF 676 (762)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (762)
+.+ ..|.||+|.+.+++++++|+||.+||.||+.++..
T Consensus 73 ~~~------------------------------------------~~p~lP~K~~~~~~~~~ie~Rr~~Le~yL~~ll~~ 110 (129)
T 4az9_A 73 KCI------------------------------------------KTPEIPSKHVRNWVPKVLEQRRQGLETYLQAVILE 110 (129)
T ss_dssp TTS------------------------------------------CCCCCCCSCCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC------------------------------------------CCCCCCcccccCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 655 67899999999999999999999999999999987
Q ss_pred CCCh-HHHHhhhCCC
Q psy7542 677 GPSR-NQVLAFLGVN 690 (762)
Q Consensus 677 ~~~~-~~~~~~~~~~ 690 (762)
...+ ..+++||+++
T Consensus 111 ~~~~~~~l~~FL~~~ 125 (129)
T 4az9_A 111 NEELPKLFLDFLNVR 125 (129)
T ss_dssp CSSCCHHHHHHTTC-
T ss_pred chhhCHHHHHHCCCC
Confidence 7765 8899999998
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.4e-18 Score=175.15 Aligned_cols=220 Identities=16% Similarity=0.087 Sum_probs=151.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|.. ++++++.+ .+.. ....++.++.+|+
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~~~~-----~~~~~~~~~~~D~ 66 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASA--GSTVIITGTSG------ERAKAVAE-----EIAN-----KYGVKAHGVEMNL 66 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSH------HHHHHHHH-----HHHH-----HHCCCEEEEECCT
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCh------HHHHHHHH-----HHHh-----hcCCceEEEEccC
Confidence 47899999999999999999999998 67899999853 22222110 1110 0135788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHH----HcCCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSK----QMIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~----~~~~lk~f 200 (762)
++++ +++++++ ++|+|||+||.... .+.++..+++|+.|+.++++.+. +. +.++|
T Consensus 67 ~~~~------~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~i 139 (248)
T 2pnf_A 67 LSEE------SINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQ-RWGRI 139 (248)
T ss_dssp TCHH------HHHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHH-TCEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCcEE
Confidence 9865 5665554 79999999997642 13466789999999977766553 33 56899
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+.... | ....|+.||+..|.+++..+.. +++
T Consensus 140 v~~sS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~~i~ 181 (248)
T 2pnf_A 140 VNISSVVGFTGN----------V----------------------------GQVNYSTTKAGLIGFTKSLAKELAPRNVL 181 (248)
T ss_dssp EEECCHHHHHCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEccHHhcCCC----------C----------------------------CCchHHHHHHHHHHHHHHHHHHhcccCeE
Confidence 999997542211 0 0157999999999998877652 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
++++|||.|.++.... . +.........+ .....+++++|+|++++.++..... ...+++|
T Consensus 182 v~~v~Pg~v~t~~~~~--------~-~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~ 241 (248)
T 2pnf_A 182 VNAVAPGFIETDMTAV--------L-SEEIKQKYKEQ---------IPLGRFGSPEEVANVVLFLCSELAS--YITGEVI 241 (248)
T ss_dssp EEEEEECSBCCGGGGG--------S-CHHHHHHHHHT---------CTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEEeceecCchhhh--------c-cHHHHHHHHhc---------CCCCCccCHHHHHHHHHHHhCchhh--cCCCcEE
Confidence 9999999987764221 0 11111111111 1123588999999999998875432 1147899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 242 ~v~gg 246 (248)
T 2pnf_A 242 HVNGG 246 (248)
T ss_dssp EESTT
T ss_pred EeCCC
Confidence 99876
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-18 Score=175.36 Aligned_cols=221 Identities=16% Similarity=0.168 Sum_probs=154.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC-CCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP-KKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~-~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|. ... . +.+.+.+ .....++.++.+|
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~--G~~V~~~~r~~~~~--~-~~~~~~~--------------~~~~~~~~~~~~D 65 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARA--GAKVGLHGRKAPAN--I-DETIASM--------------RADGGDAAFFAAD 65 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCCTT--H-HHHHHHH--------------HHTTCEEEEEECC
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEECCCchhh--H-HHHHHHH--------------HhcCCceEEEECC
Confidence 57899999999999999999999998 7789999997 322 1 1221111 1113578899999
Q ss_pred cCCCCCCCCHHHHHhhcC-------CccEEEEcccc-cCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CC--c
Q psy7542 138 VAVPDLGISAEDRQMLSE-------TIHIVYHIAAT-VRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IH--L 197 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~-------~vDiViH~AA~-v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~--l 197 (762)
+++++ +++++++ ++|+|||+||. ... .+.++..+++|+.|+.++++++... .+ .
T Consensus 66 ~~~~~------~~~~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 139 (258)
T 3afn_B 66 LATSE------ACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKAS 139 (258)
T ss_dssp TTSHH------HHHHHHHHHHHHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCC
Confidence 99865 6666655 79999999996 321 1335678999999999999877532 01 2
Q ss_pred ---cEEEEEeCCcccC-CCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc
Q psy7542 198 ---QLFVYVSTAYCHP-KEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA 273 (762)
Q Consensus 198 ---k~fV~vSSay~~~-~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~ 273 (762)
.+||++||.++.. .. ++ ...|+.||+..|.+++.++..
T Consensus 140 ~~~~~iv~~sS~~~~~~~~---------~~-----------------------------~~~Y~~sK~a~~~~~~~~~~e 181 (258)
T 3afn_B 140 GQTSAVISTGSIAGHTGGG---------PG-----------------------------AGLYGAAKAFLHNVHKNWVDF 181 (258)
T ss_dssp TSCEEEEEECCTHHHHCCC---------TT-----------------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEecchhhccCCC---------CC-----------------------------chHHHHHHHHHHHHHHHHHHh
Confidence 6899999986542 11 01 157999999999999877652
Q ss_pred ----CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCC
Q psy7542 274 ----GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNP 349 (762)
Q Consensus 274 ----glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~ 349 (762)
|++++++|||.|.++..... ...+...+..+ ....++++++|+|++++.++......
T Consensus 182 ~~~~gi~v~~v~Pg~v~t~~~~~~---------~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~~- 242 (258)
T 3afn_B 182 HTKDGVRFNIVSPGTVDTAFHADK---------TQDVRDRISNG---------IPMGRFGTAEEMAPAFLFFASHLASG- 242 (258)
T ss_dssp HGGGTEEEEEEEECSBSSGGGTTC---------CHHHHHHHHTT---------CTTCSCBCGGGTHHHHHHHHCHHHHT-
T ss_pred hcccCeEEEEEeCCCccccccccc---------CHHHHHHHhcc---------CCCCcCCCHHHHHHHHHHHhCcchhc-
Confidence 89999999999988753211 11222222222 12246899999999999888653210
Q ss_pred CCCceEEEecCC
Q psy7542 350 GNTMRVINLTAN 361 (762)
Q Consensus 350 ~~~~~iyNi~s~ 361 (762)
...+++|++.++
T Consensus 243 ~~~G~~~~v~gg 254 (258)
T 3afn_B 243 YITGQVLDINGG 254 (258)
T ss_dssp TCCSEEEEESTT
T ss_pred cccCCEEeECCC
Confidence 013789999887
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=174.00 Aligned_cols=185 Identities=12% Similarity=0.135 Sum_probs=138.9
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+||||||||+||++++++|+ . +.+|+++.|... .+.+|++++
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~--g~~V~~~~r~~~----------------------------------~~~~D~~~~ 46 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-K--KAEVITAGRHSG----------------------------------DVTVDITNI 46 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-T--TSEEEEEESSSS----------------------------------SEECCTTCH
T ss_pred cEEEEEcCCcHHHHHHHHHHH-C--CCeEEEEecCcc----------------------------------ceeeecCCH
Confidence 489999999999999999999 7 778999998531 357899886
Q ss_pred CCCCCHHHHHhhcC---CccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEEeCCcccC
Q psy7542 142 DLGISAEDRQMLSE---TIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYVSTAYCHP 210 (762)
Q Consensus 142 ~LGLs~~~l~~l~~---~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~vSSay~~~ 210 (762)
+ +++++++ .+|+|||+||..... +.+...+++|+.|+.++++++... .+-.+||++||.++..
T Consensus 47 ~------~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~ 120 (202)
T 3d7l_A 47 D------SIKKMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMED 120 (202)
T ss_dssp H------HHHHHHHHHCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTS
T ss_pred H------HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcC
Confidence 5 5666555 489999999965321 345567899999999999999764 1126899999986543
Q ss_pred CCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---CCCEEEEeeeeecc
Q psy7542 211 KEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---GMPCMILRPSIIIP 287 (762)
Q Consensus 211 ~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---glpv~IvRPs~V~G 287 (762)
... + ...|+.||+..|.+++.++.. |++++++|||.|++
T Consensus 121 ~~~---------~-----------------------------~~~Y~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~ 162 (202)
T 3d7l_A 121 PIV---------Q-----------------------------GASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEE 162 (202)
T ss_dssp CCT---------T-----------------------------CHHHHHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGG
T ss_pred CCC---------c-----------------------------cHHHHHHHHHHHHHHHHHHHHccCCeEEEEEecCccCC
Confidence 210 0 157999999999999988753 89999999999877
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 288 IWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 288 ~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
+... . ++.....++++++|+|++++.++... . .+++||+.
T Consensus 163 ~~~~------------------~---------~~~~~~~~~~~~~dva~~~~~~~~~~-~----~G~~~~vd 202 (202)
T 3d7l_A 163 SWDK------------------L---------EPFFEGFLPVPAAKVARAFEKSVFGA-Q----TGESYQVY 202 (202)
T ss_dssp GHHH------------------H---------GGGSTTCCCBCHHHHHHHHHHHHHSC-C----CSCEEEEC
T ss_pred chhh------------------h---------hhhccccCCCCHHHHHHHHHHhhhcc-c----cCceEecC
Confidence 6210 0 11123467899999999998887432 2 36788873
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5e-18 Score=177.16 Aligned_cols=220 Identities=14% Similarity=0.109 Sum_probs=142.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|.. ++++++.+ .+. ....++.++.+|+
T Consensus 12 l~~k~vlITGasggiG~~la~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~~~------~~~~~~~~~~~D~ 72 (266)
T 1xq1_A 12 LKAKTVLVTGGTKGIGHAIVEEFAGF--GAVIHTCARNE------YELNECLS-----KWQ------KKGFQVTGSVCDA 72 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHH------HTTCCEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HHH------hcCCeeEEEECCC
Confidence 57899999999999999999999998 67889999863 22222211 111 1134788999999
Q ss_pred CCCCCCCCHHHHHhhc--------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHH----HcCCccE
Q psy7542 139 AVPDLGISAEDRQMLS--------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSK----QMIHLQL 199 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~--------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~----~~~~lk~ 199 (762)
++++ +++.++ .++|+|||+||.... .+.++..+++|+.|+.++++++. +. +..+
T Consensus 73 ~~~~------~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~ 145 (266)
T 1xq1_A 73 SLRP------EREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKAS-GCGN 145 (266)
T ss_dssp TSHH------HHHHHHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSCE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcE
Confidence 9865 555554 578999999997532 23566789999999999999984 33 5689
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----gl 275 (762)
+|++||..+..... ....|+.||+..|.+++.++.. |+
T Consensus 146 iv~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi 187 (266)
T 1xq1_A 146 IIFMSSIAGVVSAS--------------------------------------VGSIYSATKGALNQLARNLACEWASDGI 187 (266)
T ss_dssp EEEEC------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred EEEEccchhccCCC--------------------------------------CCchHHHHHHHHHHHHHHHHHHHhHhCc
Confidence 99999986543210 0158999999999999887653 89
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
+++++|||.|+++..... . ...+......+ .....+++++|+|++++.++...... ..+++
T Consensus 188 ~v~~v~Pg~v~t~~~~~~-------~-~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~~--~~G~~ 248 (266)
T 1xq1_A 188 RANAVAPAVIATPLAEAV-------Y-DDEFKKVVISR---------KPLGRFGEPEEVSSLVAFLCMPAASY--ITGQT 248 (266)
T ss_dssp EEEEEECCSCC------------------------------------------CCGGGGHHHHHHHTSGGGTT--CCSCE
T ss_pred EEEEEeeCCCccchhhhh-------c-CHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCccccC--ccCcE
Confidence 999999999988753311 0 00011111100 11124788999999999988654321 14789
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+++.++
T Consensus 249 ~~v~gG 254 (266)
T 1xq1_A 249 ICVDGG 254 (266)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999887
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.7e-18 Score=174.41 Aligned_cols=220 Identities=19% Similarity=0.142 Sum_probs=144.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEE-eCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYIL-LRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~L-vR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++|+||||||||+||++++++|++. +.+|+++ .|... ..+.+.+.+ .....++.++.+|
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~--G~~V~~~~~r~~~---~~~~~~~~~--------------~~~~~~~~~~~~D 63 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNM--GANIVLNGSPAST---SLDATAEEF--------------KAAGINVVVAKGD 63 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEECTTCS---HHHHHHHHH--------------HHTTCCEEEEESC
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCcCHH---HHHHHHHHH--------------HhcCCcEEEEECC
Confidence 46899999999999999999999998 6788888 44432 112221111 1123578999999
Q ss_pred cCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 138 VAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
+++++ +++++++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..+|
T Consensus 64 ~~~~~------~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~i 137 (247)
T 2hq1_A 64 VKNPE------DVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKI 137 (247)
T ss_dssp TTSHH------HHHHHHHHHHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEE
Confidence 99865 5655554 79999999997542 2346678999999999988887642 256799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+.... | ....|+.||+..|.+++.++.. +++
T Consensus 138 v~~sS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 179 (247)
T 2hq1_A 138 INITSIAGIIGN----------A----------------------------GQANYAASKAGLIGFTKSIAKEFAAKGIY 179 (247)
T ss_dssp EEECC-----------------------------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEcChhhccCC----------C----------------------------CCcHhHHHHHHHHHHHHHHHHHHHHcCcE
Confidence 999997543211 0 0157999999999999887652 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+++++||.+.++.... .+.........+ .....+++++|+|++++.++...... ..+++|
T Consensus 180 v~~v~Pg~v~t~~~~~---------~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~~--~~G~~~ 239 (247)
T 2hq1_A 180 CNAVAPGIIKTDMTDV---------LPDKVKEMYLNN---------IPLKRFGTPEEVANVVGFLASDDSNY--ITGQVI 239 (247)
T ss_dssp EEEEEECSBCCHHHHT---------SCHHHHHHHHTT---------STTSSCBCHHHHHHHHHHHHSGGGTT--CCSCEE
T ss_pred EEEEEEEEEeccchhh---------cchHHHHHHHhh---------CCCCCCCCHHHHHHHHHHHcCccccc--ccCcEE
Confidence 9999999886542110 011122222221 12245889999999999888654321 147899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
|+.++
T Consensus 240 ~v~gG 244 (247)
T 2hq1_A 240 NIDGG 244 (247)
T ss_dssp EESTT
T ss_pred EeCCC
Confidence 99876
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=181.79 Aligned_cols=243 Identities=17% Similarity=0.127 Sum_probs=166.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|... ++++..+ .++.. .....++.++.+|+
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~------~~~~~~~-----~l~~~---~~~~~~~~~~~~Dv 72 (281)
T 3svt_A 9 FQDRTYLVTGGGSGIGKGVAAGLVAA--GASVMIVGRNPD------KLAGAVQ-----ELEAL---GANGGAIRYEPTDI 72 (281)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHH------HHHHHHH-----HHHTT---CCSSCEEEEEECCT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH-----HHHHh---CCCCceEEEEeCCC
Confidence 57999999999999999999999998 778899998642 2222111 11111 11123789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccC----c----cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVR----F----DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~----f----~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
++++ +++++++ .+|++||+||... + .+.++..+++|+.|+.++++++... .+-.+|
T Consensus 73 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~i 146 (281)
T 3svt_A 73 TNED------ETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSF 146 (281)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEE
Confidence 9875 5555543 6899999999732 1 2346678999999999999988653 233589
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... ....|+.||+..|.+++.++.. |++
T Consensus 147 v~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~l~~~la~e~~~~gi~ 188 (281)
T 3svt_A 147 VGISSIAASNTHR--------------------------------------WFGAYGVTKSAVDHLMQLAADELGASWVR 188 (281)
T ss_dssp EEECCHHHHSCCT--------------------------------------TCTHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEeCHHHcCCCC--------------------------------------CChhHHHHHHHHHHHHHHHHHHhhhcCeE
Confidence 9999986542211 0158999999999999887653 799
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+.+++||.|.++.... .............+ .....+..++|+|++++.++...... ..++++
T Consensus 189 vn~v~PG~v~t~~~~~-------~~~~~~~~~~~~~~---------~p~~r~~~~~dva~~~~~l~s~~~~~--itG~~~ 250 (281)
T 3svt_A 189 VNSIRPGLIRTDLVAA-------ITESAELSSDYAMC---------TPLPRQGEVEDVANMAMFLLSDAASF--VTGQVI 250 (281)
T ss_dssp EEEEEECSBCSGGGHH-------HHTCHHHHHHHHHH---------CSSSSCBCHHHHHHHHHHHHSGGGTT--CCSCEE
T ss_pred EEEEEeCcCcCcchhh-------cccCHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCcccCC--CCCCEE
Confidence 9999999887653210 00011111211111 11235678999999999988764431 247899
Q ss_pred EecCCCCCccc-HHHHHHHHHHhhcc
Q psy7542 357 NLTANKDFQIT-WYDIIENGKDIARN 381 (762)
Q Consensus 357 Ni~s~~~~piT-~~el~~~i~~~~G~ 381 (762)
++.++ ..++ ..++.+.+.+.+|.
T Consensus 251 ~vdgG--~~~~~~~~~~~~~~~~~~~ 274 (281)
T 3svt_A 251 NVDGG--QMLRRGPDFSAMLEPVFGR 274 (281)
T ss_dssp EESTT--GGGSCCCCCHHHHHHHHCT
T ss_pred EeCCC--hhcccCCcchhccccccCC
Confidence 99888 5555 66778888777743
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.4e-18 Score=173.86 Aligned_cols=221 Identities=13% Similarity=0.095 Sum_probs=152.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCe-EEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKV-IPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV-~~V~GD 137 (762)
+++|+|+||||||+||++++++|++. +.+|+++.|.. ++++++.+ ....++ .++.+|
T Consensus 9 ~~~k~vlITGasggiG~~la~~l~~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~~D 66 (254)
T 2wsb_A 9 LDGACAAVTGAGSGIGLEICRAFAAS--GARLILIDREA------AALDRAAQ--------------ELGAAVAARIVAD 66 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH--------------HHGGGEEEEEECC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH--------------HhcccceeEEEEe
Confidence 57899999999999999999999998 67899999963 22222211 011356 889999
Q ss_pred cCCCCCCCCHHHHHhhc------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 138 VAVPDLGISAEDRQMLS------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
+++++ +++.++ .++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..+||
T Consensus 67 ~~~~~------~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv 140 (254)
T 2wsb_A 67 VTDAE------AMTAAAAEAEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIV 140 (254)
T ss_dssp TTCHH------HHHHHHHHHHHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred cCCHH------HHHHHHHHHHhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 99865 555544 579999999997543 1345678999999988777766431 2568999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+..... .. ..+.|+.||+..|.+++..+.. |+++
T Consensus 141 ~isS~~~~~~~~----------~~--------------------------~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v 184 (254)
T 2wsb_A 141 NLGSMSGTIVNR----------PQ--------------------------FASSYMASKGAVHQLTRALAAEWAGRGVRV 184 (254)
T ss_dssp EECCGGGTSCCS----------SS--------------------------CBHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEecchhccCCC----------CC--------------------------cchHHHHHHHHHHHHHHHHHHHHhhcCeEE
Confidence 999986543211 10 0157999999999999877653 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
+++|||.|+++..... ............+ .....+++++|+|++++.++...... ..+++++
T Consensus 185 ~~v~Pg~v~t~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~~--~~G~~~~ 246 (254)
T 2wsb_A 185 NALAPGYVATEMTLKM-------RERPELFETWLDM---------TPMGRCGEPSEIAAAALFLASPAASY--VTGAILA 246 (254)
T ss_dssp EEEEECCBCSHHHHHH-------HTCHHHHHHHHHT---------STTSSCBCHHHHHHHHHHHHSGGGTT--CCSCEEE
T ss_pred EEEEecccCchhhhcc-------ccChHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCccccc--ccCCEEE
Confidence 9999999987632110 0001122222211 11245889999999999988654321 1478999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 247 v~gG 250 (254)
T 2wsb_A 247 VDGG 250 (254)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9876
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.7e-18 Score=174.83 Aligned_cols=219 Identities=14% Similarity=0.127 Sum_probs=152.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++|+|+||||||+||++++++|++. +. .|+++.|.... +.++++.+ . ....++.++.+|
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~--G~~~v~~~~r~~~~----~~~~~l~~---------~----~~~~~~~~~~~D 63 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKR--NLKNFVILDRVENP----TALAELKA---------I----NPKVNITFHTYD 63 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--CCSEEEEEESSCCH----HHHHHHHH---------H----CTTSEEEEEECC
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHC--CCcEEEEEecCchH----HHHHHHHH---------h----CCCceEEEEEEe
Confidence 47899999999999999999999998 66 48888887532 22222211 1 012478899999
Q ss_pred cCCC-CCCCCHHHHHhhc-------CCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHc--CC----ccEEEEE
Q psy7542 138 VAVP-DLGISAEDRQMLS-------ETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQM--IH----LQLFVYV 203 (762)
Q Consensus 138 l~~~-~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~--~~----lk~fV~v 203 (762)
++++ + +++.++ .++|+|||+||... .+.++..+++|+.|+.++++++... ++ ..++|++
T Consensus 64 ~~~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~i 136 (254)
T 1sby_A 64 VTVPVA------ESKKLLKKIFDQLKTVDILINGAGILD-DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANI 136 (254)
T ss_dssp TTSCHH------HHHHHHHHHHHHHSCCCEEEECCCCCC-TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEE
T ss_pred cCCChH------HHHHHHHHHHHhcCCCCEEEECCccCC-HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 9986 4 344443 37999999999764 4567889999999999999998753 11 3579999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~I 279 (762)
||..+..... . ...|+.||+..|.+++..+. .|+++++
T Consensus 137 sS~~~~~~~~----------~----------------------------~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~ 178 (254)
T 1sby_A 137 CSVTGFNAIH----------Q----------------------------VPVYSASKAAVVSFTNSLAKLAPITGVTAYS 178 (254)
T ss_dssp CCGGGTSCCT----------T----------------------------SHHHHHHHHHHHHHHHHHHHHHHHHSEEEEE
T ss_pred CchhhccCCC----------C----------------------------chHHHHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 9986643210 0 15799999999999887664 2899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
++||.|.++.......|.+. .......... ..+.+++|+|++++.++.... .+++|++.
T Consensus 179 v~Pg~v~t~~~~~~~~~~~~----~~~~~~~~~~------------~~~~~~~dvA~~i~~~~~~~~-----~G~~~~v~ 237 (254)
T 1sby_A 179 INPGITRTPLVHTFNSWLDV----EPRVAELLLS------------HPTQTSEQCGQNFVKAIEANK-----NGAIWKLD 237 (254)
T ss_dssp EEECSEESHHHHSCCCGGGS----CTTHHHHHTT------------SCCEEHHHHHHHHHHHHHHCC-----TTCEEEEE
T ss_pred EecCCccCccccccchhhhh----hHHHHHHHhc------------CCCCCHHHHHHHHHHHHHcCC-----CCCEEEEe
Confidence 99999987643222222110 0011111111 123479999999999886432 47899998
Q ss_pred CCC
Q psy7542 360 ANK 362 (762)
Q Consensus 360 s~~ 362 (762)
++.
T Consensus 238 gG~ 240 (254)
T 1sby_A 238 LGT 240 (254)
T ss_dssp TTE
T ss_pred CCc
Confidence 873
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=173.19 Aligned_cols=220 Identities=16% Similarity=0.157 Sum_probs=156.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.+|+||||||+|+||++++++|++. +.+|+++.|... ++++++.+ .+ .....++.++.+|+
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~--G~~V~~~~~~~~-----~~~~~~~~-----~~------~~~~~~~~~~~~Dv 63 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEE--GYNVAVNYAGSK-----EKAEAVVE-----EI------KAKGVDSFAIQANV 63 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCH-----HHHHHHHH-----HH------HHTTSCEEEEECCT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCCH-----HHHHHHHH-----HH------HhcCCcEEEEEccC
Confidence 36789999999999999999999999 778888877532 22222111 11 11235788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHH----HcCCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSK----QMIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~----~~~~lk~f 200 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++. +. +..++
T Consensus 64 ~d~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~i 136 (246)
T 3osu_A 64 ADAD------EVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQ-RSGAI 136 (246)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEE
Confidence 9865 5665554 78999999997642 24566789999999999999983 33 45799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... ....|+.||+..+.+.+..+. .|++
T Consensus 137 v~isS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 178 (246)
T 3osu_A 137 INLSSVVGAVGNP--------------------------------------GQANYVATKAGVIGLTKSAARELASRGIT 178 (246)
T ss_dssp EEECCHHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEcchhhcCCCC--------------------------------------CChHHHHHHHHHHHHHHHHHHHhcccCeE
Confidence 9999975432110 015799999999988887765 2899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+.+++||.|.++..... ..........+ .....+...+|+|++++.++...... ..++++
T Consensus 179 vn~v~PG~v~t~~~~~~---------~~~~~~~~~~~---------~p~~r~~~~~dva~~v~~l~s~~~~~--itG~~i 238 (246)
T 3osu_A 179 VNAVAPGFIVSDMTDAL---------SDELKEQMLTQ---------IPLARFGQDTDIANTVAFLASDKAKY--ITGQTI 238 (246)
T ss_dssp EEEEEECSBGGGCCSCS---------CHHHHHHHHTT---------CTTCSCBCHHHHHHHHHHHTSGGGTT--CCSCEE
T ss_pred EEEEEECCCcCCccccc---------CHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCccccC--CCCCEE
Confidence 99999999987753311 12222333222 22345778899999999988765431 247899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.+|
T Consensus 239 ~vdgG 243 (246)
T 3osu_A 239 HVNGG 243 (246)
T ss_dssp EESTT
T ss_pred EeCCC
Confidence 99887
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.2e-17 Score=169.05 Aligned_cols=221 Identities=14% Similarity=0.086 Sum_probs=152.7
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|+||||||||+||++++++|++. +.+|+++.|... +++++.+ .+. .....++.++.+|+++
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~--G~~V~~~~r~~~------~~~~~~~-----~~~-----~~~~~~~~~~~~D~~~ 63 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLAR--GDRVAALDLSAE------TLEETAR-----THW-----HAYADKVLRVRADVAD 63 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHH------HHHHHHH-----HHS-----TTTGGGEEEEECCTTC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH-----HHH-----HhcCCcEEEEEecCCC
Confidence 689999999999999999999998 678999998632 2222111 000 0113578999999998
Q ss_pred CCCCCCHHHHHhhcC-------CccEEEEcccccCcc----------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 141 PDLGISAEDRQMLSE-------TIHIVYHIAATVRFD----------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f~----------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
++ +++++++ ++|+|||+||..... +.++..+++|+.|+.++++.+... .+.+++
T Consensus 64 ~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~i 137 (250)
T 2cfc_A 64 EG------DVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVI 137 (250)
T ss_dssp HH------HHHHHHHHHHHHHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEE
Confidence 65 5665554 799999999975421 346678999999998877766432 256899
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... + ...|+.||+..|.+++.++.. |++
T Consensus 138 v~isS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~l~~e~~~~gi~ 179 (250)
T 2cfc_A 138 VNIASVASLVAFP---------G-----------------------------RSAYTTSKGAVLQLTKSVAVDYAGSGIR 179 (250)
T ss_dssp EEECCGGGTSCCT---------T-----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEECChhhccCCC---------C-----------------------------chhHHHHHHHHHHHHHHHHHHhcccCeE
Confidence 9999986543210 0 157999999999999887652 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
++++|||.|+++.... .. ....+...+..+ .....+...+|+|++++.++..... ...++++
T Consensus 180 v~~v~Pg~v~t~~~~~------~~-~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~ 241 (250)
T 2cfc_A 180 CNAVCPGMIETPMTQW------RL-DQPELRDQVLAR---------IPQKEIGTAAQVADAVMFLAGEDAT--YVNGAAL 241 (250)
T ss_dssp EEEEEECSBCSTTTHH------HH-TSHHHHHHHHTT---------CTTCSCBCHHHHHHHHHHHHSTTCT--TCCSCEE
T ss_pred EEEEEeCcCccCcccc------cc-CCHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCchhh--cccCCEE
Confidence 9999999998874321 00 011122222221 1123578999999999998875432 1147899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 242 ~v~gG 246 (250)
T 2cfc_A 242 VMDGA 246 (250)
T ss_dssp EESTT
T ss_pred EECCc
Confidence 99876
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-17 Score=174.80 Aligned_cols=240 Identities=15% Similarity=0.089 Sum_probs=160.3
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCc------chHHHHHHHhcChhHHHHHhhhhcccccCCe
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNK------NSRERLEEIFQSPLYEALKKEQSESAIFEKV 131 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~------~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV 131 (762)
.++||+||||||+|+||++++++|++. +.+|+++.|..... ...+++++..+ .+ .....++
T Consensus 10 ~l~gk~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~ 76 (278)
T 3sx2_A 10 PLTGKVAFITGAARGQGRAHAVRLAAD--GADIIAVDLCDQIASVPYPLATPEELAATVK-----LV------EDIGSRI 76 (278)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECCSCCTTCSSCCCCHHHHHHHHH-----HH------HHHTCCE
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC--CCeEEEEecccccccccccccchHHHHHHHH-----HH------HhcCCeE
Confidence 368999999999999999999999998 77889998863211 11233333221 11 1123689
Q ss_pred EEEEeecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHc----CCc
Q psy7542 132 IPINGDVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQM----IHL 197 (762)
Q Consensus 132 ~~V~GDl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~----~~l 197 (762)
.++.+|+++++ +++++++ .+|++||+||..... +.++..+++|+.|+.++++++... +.-
T Consensus 77 ~~~~~D~~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ 150 (278)
T 3sx2_A 77 VARQADVRDRE------SLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTG 150 (278)
T ss_dssp EEEECCTTCHH------HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSC
T ss_pred EEEeCCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC
Confidence 99999999876 5665554 789999999976543 456779999999999999987542 124
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---- 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---- 273 (762)
.++|++||..+..... .+. +. ...|+.||+..+.+++.++..
T Consensus 151 g~iv~isS~~~~~~~~--------~~~-~~-------------------------~~~Y~asKaa~~~~~~~la~e~~~~ 196 (278)
T 3sx2_A 151 GSIVLISSSAGLAGVG--------SAD-PG-------------------------SVGYVAAKHGVVGLMRVYANLLAGQ 196 (278)
T ss_dssp EEEEEECCGGGTSCCC--------CSS-HH-------------------------HHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred cEEEEEccHHhcCCCc--------cCC-CC-------------------------chHhHHHHHHHHHHHHHHHHHHhcc
Confidence 6899999986543211 000 10 047999999999998877652
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHH-hcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCC
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGA-GKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNT 352 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~-~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~ 352 (762)
|++++.++||.|.++.... .. ....+... .........++... ..++.++|+|++++.++...... ..
T Consensus 197 gi~vn~v~PG~v~T~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~p-~~~~~p~dvA~~v~~l~s~~~~~--it 265 (278)
T 3sx2_A 197 MIRVNSIHPSGVETPMINN-------EF-TREWLAKMAAATDTPGAMGNAMP-VEVLAPEDVANAVAWLVSDQARY--IT 265 (278)
T ss_dssp TEEEEEEEESCBSSTTTSS-------HH-HHHHHHHHHHHCC--CTTSCSSS-CSSBCHHHHHHHHHHHTSGGGTT--CC
T ss_pred CcEEEEEecCCccCccchh-------hh-HHHHHhhccchhhhhhhhhhhcC-cCcCCHHHHHHHHHHHhCccccc--cc
Confidence 7999999999997764221 00 00111111 11110101112222 57889999999999988754431 25
Q ss_pred ceEEEecCC
Q psy7542 353 MRVINLTAN 361 (762)
Q Consensus 353 ~~iyNi~s~ 361 (762)
++++++.+|
T Consensus 266 G~~i~vdGG 274 (278)
T 3sx2_A 266 GVTLPVDAG 274 (278)
T ss_dssp SCEEEESTT
T ss_pred CCEEeECCC
Confidence 789999887
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-17 Score=170.68 Aligned_cols=218 Identities=15% Similarity=0.092 Sum_probs=150.3
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
..++|+||||||+|+||++++++|++. +.+|+++.|.. ++++++. .....++.++.+|
T Consensus 11 ~~~~k~vlVTGas~gIG~~~a~~l~~~--G~~V~~~~r~~------~~~~~~~--------------~~~~~~~~~~~~D 68 (249)
T 3f9i_A 11 DLTGKTSLITGASSGIGSAIARLLHKL--GSKVIISGSNE------EKLKSLG--------------NALKDNYTIEVCN 68 (249)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHH--------------HHHCSSEEEEECC
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEcCCH------HHHHHHH--------------HHhccCccEEEcC
Confidence 358999999999999999999999998 77899999853 2333321 1123578899999
Q ss_pred cCCCCCCCCHHHHHhhcC---CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEEe
Q psy7542 138 VAVPDLGISAEDRQMLSE---TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVS 204 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~---~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vS 204 (762)
+++++ ++.++++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..+||++|
T Consensus 69 ~~~~~------~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~is 142 (249)
T 3f9i_A 69 LANKE------ECSNLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINIS 142 (249)
T ss_dssp TTSHH------HHHHHHHTCSCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCCHH------HHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 99865 5555554 68999999997542 2567789999999999998887532 2456999999
Q ss_pred CCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEE
Q psy7542 205 TAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMIL 280 (762)
Q Consensus 205 Say~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~Iv 280 (762)
|..+..... . ...|+.||+..|.+++..+. .|+++.++
T Consensus 143 S~~~~~~~~----------~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v 184 (249)
T 3f9i_A 143 SIVGIAGNP----------G----------------------------QANYCASKAGLIGMTKSLSYEVATRGITVNAV 184 (249)
T ss_dssp CCCC--CCS----------C----------------------------SHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred cHHhccCCC----------C----------------------------CchhHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 986543211 0 15799999998888877665 38999999
Q ss_pred eeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 281 RPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 281 RPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
+||.|.++..... .......... ......+..++|+|++++.++...... ..++++++.+
T Consensus 185 ~PG~v~t~~~~~~---------~~~~~~~~~~---------~~~~~~~~~~~dva~~~~~l~s~~~~~--~tG~~~~vdg 244 (249)
T 3f9i_A 185 APGFIKSDMTDKL---------NEKQREAIVQ---------KIPLGTYGIPEDVAYAVAFLASNNASY--ITGQTLHVNG 244 (249)
T ss_dssp EECCBC------C---------CHHHHHHHHH---------HCTTCSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEEST
T ss_pred ecCccccCccccc---------CHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHcCCccCC--ccCcEEEECC
Confidence 9999876643211 1111111111 122346888999999999988765431 2478999988
Q ss_pred C
Q psy7542 361 N 361 (762)
Q Consensus 361 ~ 361 (762)
+
T Consensus 245 G 245 (249)
T 3f9i_A 245 G 245 (249)
T ss_dssp T
T ss_pred C
Confidence 7
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-17 Score=173.49 Aligned_cols=237 Identities=17% Similarity=0.107 Sum_probs=159.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCc------chHHHHHHHhcChhHHHHHhhhhcccccCCeE
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNK------NSRERLEEIFQSPLYEALKKEQSESAIFEKVI 132 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~------~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~ 132 (762)
++||+||||||+|+||++++++|++. +.+|+++.|..... ...+++++..+ .+ .....++.
T Consensus 8 l~~k~~lVTGas~gIG~a~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~ 74 (281)
T 3s55_A 8 FEGKTALITGGARGMGRSHAVALAEA--GADIAICDRCENSDVVGYPLATADDLAETVA-----LV------EKTGRRCI 74 (281)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCSCCTTCSSCCCCHHHHHHHHH-----HH------HHTTCCEE
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHC--CCeEEEEeCCccccccccccccHHHHHHHHH-----HH------HhcCCeEE
Confidence 58999999999999999999999999 77899999964321 11233333211 11 12236789
Q ss_pred EEEeecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---C
Q psy7542 133 PINGDVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---I 195 (762)
Q Consensus 133 ~V~GDl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~ 195 (762)
++.+|+++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++... .
T Consensus 75 ~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~ 148 (281)
T 3s55_A 75 SAKVDVKDRA------ALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKR 148 (281)
T ss_dssp EEECCTTCHH------HHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 9999999875 5555544 79999999997542 2456778999999999999987431 2
Q ss_pred CccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--
Q psy7542 196 HLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-- 273 (762)
Q Consensus 196 ~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-- 273 (762)
+..++|++||..+..... + ...|+.||+..+.+.+..+..
T Consensus 149 ~~g~iv~isS~~~~~~~~---------~-----------------------------~~~Y~asK~a~~~~~~~la~e~~ 190 (281)
T 3s55_A 149 NYGRIVTVSSMLGHSANF---------A-----------------------------QASYVSSKWGVIGLTKCAAHDLV 190 (281)
T ss_dssp TCEEEEEECCGGGGSCCT---------T-----------------------------CHHHHHHHHHHHHHHHHHHHHTG
T ss_pred CCCEEEEECChhhcCCCC---------C-----------------------------CchhHHHHHHHHHHHHHHHHHHh
Confidence 457899999986643211 0 157999999999999887762
Q ss_pred --CCCEEEEeeeeeccCCCCCCC---CCCCCCCCch-HHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 274 --GMPCMILRPSIIIPIWKDPLP---GWTDNINGPT-GLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 274 --glpv~IvRPs~V~G~~~eP~p---GWidn~~gp~-~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
|+++.+++||.|.++...... .+......+. .-..... .........++.++|+|++++.++.....
T Consensus 191 ~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~p~dvA~~v~~L~s~~~~ 263 (281)
T 3s55_A 191 GYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVF-------ASLHLQYAPFLKPEEVTRAVLFLVDEASS 263 (281)
T ss_dssp GGTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHHHHHHH-------HHHCSSSCSCBCHHHHHHHHHHHHSGGGT
T ss_pred hcCcEEEEEecCcccCccccchhhhccccccccccchhHHHHHH-------HhhhccCcCCCCHHHHHHHHHHHcCCccc
Confidence 899999999999887532100 0000000000 0000000 00112225789999999999998876543
Q ss_pred CCCCCceEEEecCC
Q psy7542 348 NPGNTMRVINLTAN 361 (762)
Q Consensus 348 ~~~~~~~iyNi~s~ 361 (762)
. ..++++++.+|
T Consensus 264 ~--itG~~i~vdgG 275 (281)
T 3s55_A 264 H--ITGTVLPIDAG 275 (281)
T ss_dssp T--CCSCEEEESTT
T ss_pred C--CCCCEEEECCC
Confidence 1 24789999988
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-17 Score=171.03 Aligned_cols=215 Identities=17% Similarity=0.098 Sum_probs=149.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|...... +.. .....++.++.+|+
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~~------~~~--------------~~~~~~~~~~~~Dv 62 (257)
T 3tpc_A 5 LKSRVFIVTGASSGLGAAVTRMLAQE--GATVLGLDLKPPAGE------EPA--------------AELGAAVRFRNADV 62 (257)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESSCC--------------------------------CEEEECCT
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCChHHHH------HHH--------------HHhCCceEEEEccC
Confidence 47899999999999999999999998 778899999764321 110 11124788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-----------cccHHHHHHHhHHHHHHHHHHHHHc------
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-----------DDYMQTYVFLNTRGTRDMLNLSKQM------ 194 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-----------~~~l~~~~~~NV~GT~~LLelA~~~------ 194 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++...
T Consensus 63 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~ 136 (257)
T 3tpc_A 63 TNEA------DATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEP 136 (257)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCC
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc
Confidence 9865 5655554 79999999997632 2456778999999999999998753
Q ss_pred ---CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHH
Q psy7542 195 ---IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYM 271 (762)
Q Consensus 195 ---~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~ 271 (762)
++..++|++||..+..... ....|+.||+..+.+.+..+
T Consensus 137 ~~~~~~g~iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~la 178 (257)
T 3tpc_A 137 DADGERGVIVNTASIAAFDGQI--------------------------------------GQAAYAASKGGVAALTLPAA 178 (257)
T ss_dssp CTTSCCEEEEEECCTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEechhhccCCC--------------------------------------CCcchHHHHHHHHHHHHHHH
Confidence 1346899999986532110 01579999999998887766
Q ss_pred H----cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcc-cccccHHHHHHHHHHHhhccc
Q psy7542 272 E----AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTC-ADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 272 ~----~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~-~d~VpVDdvA~aii~a~~~~~ 346 (762)
. .|+++++++||.|.++.....+ ....... ...... ..+..++|+|++++.++....
T Consensus 179 ~e~~~~gi~vn~v~PG~v~t~~~~~~~---------~~~~~~~---------~~~~p~~~r~~~~~dva~~v~~l~s~~~ 240 (257)
T 3tpc_A 179 RELARFGIRVVTIAPGIFDTPMMAGMP---------QDVQDAL---------AASVPFPPRLGRAEEYAALVKHICENTM 240 (257)
T ss_dssp HHHGGGTEEEEEEEECCBSCC--------------------------------CCSSSSCSCBCHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCeEEEEEEeCCCCChhhccCC---------HHHHHHH---------HhcCCCCCCCCCHHHHHHHHHHHcccCC
Confidence 5 3899999999999776432111 0010111 111111 357889999999999987643
Q ss_pred CCCCCCceEEEecCC
Q psy7542 347 SNPGNTMRVINLTAN 361 (762)
Q Consensus 347 ~~~~~~~~iyNi~s~ 361 (762)
. .++++++.++
T Consensus 241 i----tG~~i~vdGG 251 (257)
T 3tpc_A 241 L----NGEVIRLDGA 251 (257)
T ss_dssp C----CSCEEEESTT
T ss_pred c----CCcEEEECCC
Confidence 3 5889999887
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-17 Score=172.64 Aligned_cols=219 Identities=12% Similarity=0.062 Sum_probs=149.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|.... +.+.+. . .+ .++.+|+
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~----~~~~~~-----------------~-~~-~~~~~D~ 58 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFARE--GALVALCDLRPEG----KEVAEA-----------------I-GG-AFFQVDL 58 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSTTH----HHHHHH-----------------H-TC-EEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCChhH----HHHHHH-----------------h-hC-CEEEeeC
Confidence 47899999999999999999999998 6789999997532 111110 0 14 7889999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 59 ~~~~------~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv 132 (256)
T 2d1y_A 59 EDER------ERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIV 132 (256)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9865 5555443 68999999997542 1346778999999999999988642 2467999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+..... . ...|+.||+..|.+++..+.. |+++
T Consensus 133 ~isS~~~~~~~~----------~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 174 (256)
T 2d1y_A 133 NVASVQGLFAEQ----------E----------------------------NAAYNASKGGLVNLTRSLALDLAPLRIRV 174 (256)
T ss_dssp EECCGGGTSBCT----------T----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEccccccCCCC----------C----------------------------ChhHHHHHHHHHHHHHHHHHHHhhcCeEE
Confidence 999986543210 0 157999999999998877652 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHh-cCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAG-KGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~-~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
++++||.|.++... ..+.... .+..............+++++|+|++++.++...... ..++++
T Consensus 175 ~~v~Pg~v~t~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~s~~~~~--~~G~~~ 239 (256)
T 2d1y_A 175 NAVAPGAIATEAVL-------------EAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVLFLASEKASF--ITGAIL 239 (256)
T ss_dssp EEEEECSBCCHHHH-------------HHHC--------CHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTT--CCSCEE
T ss_pred EEEeeCCccCchhh-------------hccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcC--CCCCEE
Confidence 99999987553210 0000000 0000000011122346899999999999988764321 147899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 240 ~v~gG 244 (256)
T 2d1y_A 240 PVDGG 244 (256)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 99987
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=172.03 Aligned_cols=228 Identities=13% Similarity=0.061 Sum_probs=155.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|.... ..+.++++. . ....++.++.+|+
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~--G~~V~~~~r~~~~--~~~~~~~l~---------~-----~~~~~~~~~~~Dl 73 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAA--GANVAVIYRSAAD--AVEVTEKVG---------K-----EFGVKTKAYQCDV 73 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHT--TEEEEEEESSCTT--HHHHHHHHH---------H-----HHTCCEEEEECCT
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCcchh--hHHHHHHHH---------H-----hcCCeeEEEEeeC
Confidence 57899999999999999999999998 7789999996532 122222211 1 1135789999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc----CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM----IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~----~~lk~f 200 (762)
++++ +++.++ ..+|+|||+||.... .+.++..+++|+.|+.++++++... +...+|
T Consensus 74 ~~~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~i 147 (265)
T 1h5q_A 74 SNTD------IVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSI 147 (265)
T ss_dssp TCHH------HHHHHHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceE
Confidence 9865 454443 358999999997542 1345678999999999999988653 224789
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+........ .+. .....|+.||+..|.+++..+.. |++
T Consensus 148 v~~sS~~~~~~~~~~~-----~~~--------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 196 (265)
T 1h5q_A 148 VVTSSMSSQIINQSSL-----NGS--------------------------LTQVFYNSSKAACSNLVKGLAAEWASAGIR 196 (265)
T ss_dssp EEECCGGGTSCCEEET-----TEE--------------------------CSCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEeCCchhhccccccc-----ccc--------------------------ccccccHHHHHHHHHHHHHHHHHHHhcCcE
Confidence 9999986543221000 000 00157999999999999887653 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
++++|||.|.++.... . ........... .....+++++|+|++++.++..... ...++++
T Consensus 197 v~~v~Pg~v~t~~~~~-------~--~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~ 256 (265)
T 1h5q_A 197 VNALSPGYVNTDQTAH-------M--DKKIRDHQASN---------IPLNRFAQPEEMTGQAILLLSDHAT--YMTGGEY 256 (265)
T ss_dssp EEEEEECSBCCGGGGG-------S--CHHHHHHHHHT---------CTTSSCBCGGGGHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEecCccccccccc-------c--chhHHHHHHhc---------CcccCCCCHHHHHHHHHhhccCchh--cCcCcEE
Confidence 9999999998764321 0 11111111111 1123478899999999998865432 1147899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 257 ~v~gG 261 (265)
T 1h5q_A 257 FIDGG 261 (265)
T ss_dssp EECTT
T ss_pred EecCC
Confidence 99887
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.1e-17 Score=171.31 Aligned_cols=226 Identities=15% Similarity=0.103 Sum_probs=153.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+|+||||||+||++++++|++. +.+|+++.|.. +++++.. .....++.++.+|+
T Consensus 14 l~gk~vlVTGas~gIG~~~a~~L~~~--G~~V~~~~r~~------~~~~~~~--------------~~~~~~~~~~~~Dl 71 (291)
T 3rd5_A 14 FAQRTVVITGANSGLGAVTARELARR--GATVIMAVRDT------RKGEAAA--------------RTMAGQVEVRELDL 71 (291)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHH--------------TTSSSEEEEEECCT
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHH--------------HHhcCCeeEEEcCC
Confidence 58999999999999999999999998 77899999963 2333322 11235789999999
Q ss_pred CCCCCCCCHHHHHhhcC---CccEEEEcccccCc-----cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccC
Q psy7542 139 AVPDLGISAEDRQMLSE---TIHIVYHIAATVRF-----DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHP 210 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~---~vDiViH~AA~v~f-----~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~ 210 (762)
++++ +++++++ .+|+|||+||.... .+.++..+++|+.|+.++++++... ..+++|++||..+..
T Consensus 72 ~d~~------~v~~~~~~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~-~~~riv~isS~~~~~ 144 (291)
T 3rd5_A 72 QDLS------SVRRFADGVSGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPR-LTDRVVTVSSMAHWP 144 (291)
T ss_dssp TCHH------HHHHHHHTCCCEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGG-EEEEEEEECCGGGTT
T ss_pred CCHH------HHHHHHHhcCCCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhheeEeechhhcc
Confidence 9866 6666665 67999999997542 3556789999999999999999875 456999999986543
Q ss_pred CCcccccccC-CCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----C--CCEEEEeee
Q psy7542 211 KEKVLEEKTY-PPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----G--MPCMILRPS 283 (762)
Q Consensus 211 ~~~~i~E~~~-~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----g--lpv~IvRPs 283 (762)
.....++... ..+..+. ..|+.||+..+.+++..+.+ | +.++.++||
T Consensus 145 ~~~~~~~~~~~~~~~~~~--------------------------~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG 198 (291)
T 3rd5_A 145 GRINLEDLNWRSRRYSPW--------------------------LAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPG 198 (291)
T ss_dssp CCCCSSCTTCSSSCCCHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCS
T ss_pred CCCCcccccccccCCCCc--------------------------chHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCC
Confidence 3211111000 0111111 57999999999988877653 5 999999999
Q ss_pred eeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 284 IIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 284 ~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
.|..+.....+ ......... ....+-..+.+++|++++.++..... .++.+++.++
T Consensus 199 ~v~T~~~~~~~---------~~~~~~~~~---------~~~~~~~~~~~~~A~~~~~l~~~~~~----~G~~~~vdgG 254 (291)
T 3rd5_A 199 YSHTNLQGASG---------RKLGDALMS---------AATRVVATDADFGARQTLYAASQDLP----GDSFVGPRFG 254 (291)
T ss_dssp GGGSCC--------------------------------------CHHHHHHHHHHHHHHHSCCC----TTCEEEETTS
T ss_pred CCccccccccc---------hHHHHHHHH---------HHHHHHhCCHHHHHHHHHHHHcCCCC----CCceeCCccc
Confidence 98665432110 000000000 01112234689999999999988543 5788887654
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.8e-17 Score=170.86 Aligned_cols=211 Identities=14% Similarity=0.123 Sum_probs=150.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|.. ++++++.+ ....++.++.+|+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~D~ 62 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAE--GAKVVFGDILD------EEGKAMAA--------------ELADAARYVHLDV 62 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH--------------HTGGGEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH--------------HhhcCceEEEecC
Confidence 57899999999999999999999998 77889999863 22222111 0113578899999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHH----HcCCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSK----QMIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~----~~~~lk~f 200 (762)
++++ +++++++ ++|+|||+||.... .+.++..+++|+.|+.++++.+. +. +..++
T Consensus 63 ~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~i 135 (260)
T 1nff_A 63 TQPA------QWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSI 135 (260)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEE
Confidence 9865 5666655 79999999997542 23567789999999977666553 33 46799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... + ...|+.||+..|.+++..+. .|++
T Consensus 136 v~isS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 177 (260)
T 1nff_A 136 INISSIEGLAGTV---------A-----------------------------CHGYTATKFAVRGLTKSTALELGPSGIR 177 (260)
T ss_dssp EEECCGGGTSCCT---------T-----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEeehhhcCCCC---------C-----------------------------chhHHHHHHHHHHHHHHHHHHhCccCcE
Confidence 9999986643211 0 14799999999999987665 2899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
++++|||.|.++... +. +.. .. ......++.++|+|++++.++...... ..++++
T Consensus 178 v~~v~Pg~v~t~~~~----~~-----~~~---------~~-----~~~~~~~~~~~dvA~~v~~l~s~~~~~--~~G~~~ 232 (260)
T 1nff_A 178 VNSIHPGLVKTPMTD----WV-----PED---------IF-----QTALGRAAEPVEVSNLVVYLASDESSY--STGAEF 232 (260)
T ss_dssp EEEEEECCBCSGGGT----TS-----CTT---------CS-----CCSSSSCBCHHHHHHHHHHHHSGGGTT--CCSCEE
T ss_pred EEEEEeCCCCCCccc----cc-----hhh---------HH-----hCccCCCCCHHHHHHHHHHHhCccccC--CcCCEE
Confidence 999999999876422 10 000 00 011235788999999999988654321 147899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 233 ~v~gG 237 (260)
T 1nff_A 233 VVDGG 237 (260)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 99887
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=8.1e-17 Score=169.19 Aligned_cols=224 Identities=9% Similarity=0.039 Sum_probs=152.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeC-CCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLR-PKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR-~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++|+||||||+|+||++++++|++. +.+|+++.| .. ++++++.+ .+... ...++.++.+|
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~------~~~~~~~~-----~~~~~-----~~~~~~~~~~D 70 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQ--GFRVVVHYRHSE------GAAQRLVA-----ELNAA-----RAGSAVLCKGD 70 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCH------HHHHHHHH-----HHHHH-----STTCEEEEECC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCCh------HHHHHHHH-----HHHHh-----cCCceEEEecc
Confidence 57899999999999999999999998 678999998 42 22222211 11111 12578899999
Q ss_pred cCCCCCCCCHHHHHhhcC-------CccEEEEcccccCcc------------------ccHHHHHHHhHHHHHHHHHHHH
Q psy7542 138 VAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRFD------------------DYMQTYVFLNTRGTRDMLNLSK 192 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f~------------------~~l~~~~~~NV~GT~~LLelA~ 192 (762)
++++.- ..++++.+++ .+|+|||+||..... +.++..+++|+.|+.++++++.
T Consensus 71 l~~~~~--~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 148 (276)
T 1mxh_A 71 LSLSSS--LLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFA 148 (276)
T ss_dssp CSSSTT--HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCCccc--cHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHH
Confidence 998710 0014555443 789999999975321 4566789999999999999998
Q ss_pred Hc--CCc------cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHH
Q psy7542 193 QM--IHL------QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCE 264 (762)
Q Consensus 193 ~~--~~l------k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE 264 (762)
.. .+. .++|++||..+.... |. ...|+.||+..+
T Consensus 149 ~~~~~~~~~~~~~g~iv~isS~~~~~~~----------~~----------------------------~~~Y~asK~a~~ 190 (276)
T 1mxh_A 149 RRQGEGGAWRSRNLSVVNLCDAMTDLPL----------PG----------------------------FCVYTMAKHALG 190 (276)
T ss_dssp HTC-------CCCEEEEEECCGGGGSCC----------TT----------------------------CHHHHHHHHHHH
T ss_pred HHHhcCCCCCCCCcEEEEECchhhcCCC----------CC----------------------------CeehHHHHHHHH
Confidence 63 233 689999998654321 00 157999999999
Q ss_pred HHHHHHHHc----CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHH
Q psy7542 265 GVVTEYMEA----GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLL 340 (762)
Q Consensus 265 ~lv~~~~~~----glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~ 340 (762)
.+++..+.. |+++++++||.|.++ .. + +........... ...+++..++|+|++++.
T Consensus 191 ~l~~~la~e~~~~gi~v~~v~PG~v~t~-~~----~------~~~~~~~~~~~~--------p~~r~~~~~~dva~~v~~ 251 (276)
T 1mxh_A 191 GLTRAAALELAPRHIRVNAVAPGLSLLP-PA----M------PQETQEEYRRKV--------PLGQSEASAAQIADAIAF 251 (276)
T ss_dssp HHHHHHHHHHGGGTEEEEEEEESSBSCC-SS----S------CHHHHHHHHTTC--------TTTSCCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCeEEEEEecCcccCC-cc----C------CHHHHHHHHhcC--------CCCCCCCCHHHHHHHHHH
Confidence 998877653 899999999999876 21 1 112222222211 111237899999999999
Q ss_pred HhhcccCCCCCCceEEEecCC
Q psy7542 341 STWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 341 a~~~~~~~~~~~~~iyNi~s~ 361 (762)
++..... ...++++++.++
T Consensus 252 l~s~~~~--~~tG~~~~vdgG 270 (276)
T 1mxh_A 252 LVSKDAG--YITGTTLKVDGG 270 (276)
T ss_dssp HHSGGGT--TCCSCEEEESTT
T ss_pred HhCcccc--CccCcEEEECCc
Confidence 8865432 114789999876
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-17 Score=172.85 Aligned_cols=234 Identities=10% Similarity=0.098 Sum_probs=153.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.+|+||||||+|+||++++++|++. +.+|+++.|... ++++++.+ .+. .....++.++.+|+
T Consensus 23 l~~k~~lVTGas~GIG~~ia~~la~~--G~~V~~~~r~~~-----~~~~~~~~-----~~~-----~~~~~~~~~~~~Dv 85 (281)
T 3v2h_A 23 MMTKTAVITGSTSGIGLAIARTLAKA--GANIVLNGFGAP-----DEIRTVTD-----EVA-----GLSSGTVLHHPADM 85 (281)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEECCCCH-----HHHHHHHH-----HHH-----TTCSSCEEEECCCT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCCh-----HHHHHHHH-----HHh-----hccCCcEEEEeCCC
Confidence 57899999999999999999999999 678899888532 22222111 011 11246789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 86 ~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv 159 (281)
T 3v2h_A 86 TKPS------EIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRII 159 (281)
T ss_dssp TCHH------HHHHHHHHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEE
Confidence 9875 5555544 78999999997542 2446678999999999999988421 2457899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+..... . ...|+.||+..+.+++..+.. |+++
T Consensus 160 ~isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gI~v 201 (281)
T 3v2h_A 160 NIASAHGLVASP----------F----------------------------KSAYVAAKHGIMGLTKTVALEVAESGVTV 201 (281)
T ss_dssp EECCGGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECCcccccCCC----------C----------------------------chHHHHHHHHHHHHHHHHHHHhhhcCcEE
Confidence 999986543211 0 157999999999998877653 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
.+++||.|.++....... ......+.. ..........+......++.++|+|++++.++...... ..+++++
T Consensus 202 n~v~PG~v~t~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~p~~r~~~~edvA~~v~~L~s~~a~~--itG~~i~ 273 (281)
T 3v2h_A 202 NSICPGYVLTPLVEKQIP---DQARTRGIT---EEQVINEVMLKGQPTKKFITVEQVASLALYLAGDDAAQ--ITGTHVS 273 (281)
T ss_dssp EEEEECSBCC----------------------------------CCTTCSCBCHHHHHHHHHHHHSSGGGG--CCSCEEE
T ss_pred EEEECCCCcCcchhhhcc---hhhhhcCCC---HHHHHHHHHHhcCCCCCccCHHHHHHHHHHHcCCCcCC--CCCcEEE
Confidence 999999998764321100 000000000 00000111233445567999999999999988754321 1478999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 274 vdGG 277 (281)
T 3v2h_A 274 MDGG 277 (281)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9877
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=174.78 Aligned_cols=231 Identities=17% Similarity=0.099 Sum_probs=155.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ .+... ...++.++.+|+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~l~~~-----~~~~~~~~~~D~ 66 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKE--GAHIVLVARQV------DRLHEAAR-----SLKEK-----FGVRVLEVAVDV 66 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHHHH-----HCCCEEEEECCT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCH------HHHHHHHH-----HHHHh-----cCCceEEEEcCC
Confidence 47899999999999999999999998 67899999863 22222211 11111 125788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++++++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 67 ~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv 140 (263)
T 3ai3_A 67 ATPE------GVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAII 140 (263)
T ss_dssp TSHH------HHHHHHHHHHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9865 5665554 79999999997542 2356778999999999999887531 2467999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... . ...|+.||+..|.+++..+. .|+++
T Consensus 141 ~isS~~~~~~~~----------~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 182 (263)
T 3ai3_A 141 HNASICAVQPLW----------Y----------------------------EPIYNVTKAALMMFSKTLATEVIKDNIRV 182 (263)
T ss_dssp EECCGGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECchhhcCCCC----------C----------------------------cchHHHHHHHHHHHHHHHHHHhhhcCcEE
Confidence 999986653211 0 15799999999999988765 28999
Q ss_pred EEEeeeeeccCCCCCC-CCCCCCCCC-chHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 278 MILRPSIIIPIWKDPL-PGWTDNING-PTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~-pGWidn~~g-p~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
+++|||.|.++..... +.+...... ..........+ ......++.++|+|++++.++..... ...+++
T Consensus 183 ~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~p~~~~~~~~dvA~~~~~l~s~~~~--~~~G~~ 252 (263)
T 3ai3_A 183 NCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADE--------HAPIKRFASPEELANFFVFLCSERAT--YSVGSA 252 (263)
T ss_dssp EEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHH--------HCTTCSCBCHHHHHHHHHHHTSTTCT--TCCSCE
T ss_pred EEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhc--------CCCCCCCcCHHHHHHHHHHHcCcccc--CCCCcE
Confidence 9999999877632100 000000000 00111111111 01124588999999999998865432 124789
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
|++.++
T Consensus 253 ~~vdgG 258 (263)
T 3ai3_A 253 YFVDGG 258 (263)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 999887
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.75 E-value=9.4e-18 Score=172.47 Aligned_cols=219 Identities=15% Similarity=0.094 Sum_probs=149.5
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEE-eCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYIL-LRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~L-vR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
||+||||||||+||++++++|++. +.+|+++ .|.. ++++++.+ .+. ....++.++.+|++
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~--G~~v~~~~~r~~------~~~~~~~~-----~~~------~~~~~~~~~~~D~~ 61 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKA--GCKVLVNYARSA------KAAEEVSK-----QIE------AYGGQAITFGGDVS 61 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCH------HHHHHHHH-----HHH------HHTCEEEEEECCTT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEcCCCH------HHHHHHHH-----HHH------hcCCcEEEEeCCCC
Confidence 589999999999999999999998 6778875 5642 12222110 111 11247889999999
Q ss_pred CCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEE
Q psy7542 140 VPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVY 202 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~ 202 (762)
+++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+..+||+
T Consensus 62 ~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~ 135 (244)
T 1edo_A 62 KEA------DVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIIN 135 (244)
T ss_dssp SHH------HHHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 865 5665554 68999999997642 1346678999999999999988653 25679999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~ 278 (762)
+||..+.... | ....|+.||+..|.+++..+.. |++++
T Consensus 136 ~sS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 177 (244)
T 1edo_A 136 IASVVGLIGN----------I----------------------------GQANYAAAKAGVIGFSKTAAREGASRNINVN 177 (244)
T ss_dssp ECCTHHHHCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred ECChhhcCCC----------C----------------------------CCccchhhHHHHHHHHHHHHHHhhhcCCEEE
Confidence 9998543211 0 0157999999998888776652 89999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
++|||.|.++.... . .......... . .....+++++|+|++++.++..+... ...++++++
T Consensus 178 ~v~Pg~v~t~~~~~--------~-~~~~~~~~~~-~--------~~~~~~~~~~dva~~~~~l~~~~~~~-~~~G~~~~v 238 (244)
T 1edo_A 178 VVCPGFIASDMTAK--------L-GEDMEKKILG-T--------IPLGRTGQPENVAGLVEFLALSPAAS-YITGQAFTI 238 (244)
T ss_dssp EEEECSBCSHHHHT--------T-CHHHHHHHHT-S--------CTTCSCBCHHHHHHHHHHHHHCSGGG-GCCSCEEEE
T ss_pred EEeeCccccchhhh--------c-ChHHHHHHhh-c--------CCCCCCCCHHHHHHHHHHHhCCCccC-CcCCCEEEe
Confidence 99999987653211 0 1111111111 1 11235789999999999988443210 114789999
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.++
T Consensus 239 ~gG 241 (244)
T 1edo_A 239 DGG 241 (244)
T ss_dssp STT
T ss_pred CCC
Confidence 876
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-17 Score=172.30 Aligned_cols=227 Identities=14% Similarity=0.074 Sum_probs=152.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|... ++..+++ .....++.++.+|+
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~--G~~V~~~~r~~~----~~~~~~l---------------~~~~~~~~~~~~D~ 60 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARA--GANIVLNGFGDP----APALAEI---------------ARHGVKAVHHPADL 60 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEECSSCC----HHHHHHH---------------HTTSCCEEEECCCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCch----HHHHHHH---------------HhcCCceEEEeCCC
Confidence 47899999999999999999999998 678899998754 1111221 11134688899999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHH----HHcCCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLS----KQMIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA----~~~~~lk~f 200 (762)
++++ +++++++ ++|+|||+||.... .+.++..+++|+.|+.++.+.+ ++. +..++
T Consensus 61 ~~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~i 133 (255)
T 2q2v_A 61 SDVA------QIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRAR-NWGRI 133 (255)
T ss_dssp TSHH------HHHHHHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEE
Confidence 9865 6666665 79999999997542 2446778999999888777666 333 56899
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... . ...|+.||+..+.+.+..+.. |++
T Consensus 134 v~isS~~~~~~~~----------~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 175 (255)
T 2q2v_A 134 INIASVHGLVGST----------G----------------------------KAAYVAAKHGVVGLTKVVGLETATSNVT 175 (255)
T ss_dssp EEECCGGGTSCCT----------T----------------------------BHHHHHHHHHHHHHHHHHHHHTTTSSEE
T ss_pred EEEcCchhccCCC----------C----------------------------chhHHHHHHHHHHHHHHHHHHhcccCcE
Confidence 9999986543211 0 157999999999999887763 799
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCC-chHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNING-PTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~g-p~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
++++|||.|.++.......-.....+ ......... ........+++++|+|++++.++...... ..+++
T Consensus 176 v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~p~~~~~~~~dvA~~~~~l~s~~~~~--~tG~~ 245 (255)
T 2q2v_A 176 CNAICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLL--------AEKQPSLAFVTPEHLGELVLFLCSEAGSQ--VRGAA 245 (255)
T ss_dssp EEEEEESSBCCHHHHHHHHHHHHHTCCHHHHHHHHH--------TTTCTTCCCBCHHHHHHHHHHHTSGGGTT--CCSCE
T ss_pred EEEEeeCCCcCcchhhhcccccccccchHHHHHHHH--------hccCCCCCCcCHHHHHHHHHHHhCCccCC--CCCCE
Confidence 99999998876531100000000000 000001110 11122346899999999999888654321 14789
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+++.++
T Consensus 246 ~~vdgG 251 (255)
T 2q2v_A 246 WNVDGG 251 (255)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 999876
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-17 Score=172.08 Aligned_cols=226 Identities=12% Similarity=0.083 Sum_probs=153.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|.. ++++++.+ ....++.++.+|+
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~D~ 67 (263)
T 3ak4_A 10 LSGRKAIVTGGSKGIGAAIARALDKA--GATVAIADLDV------MAAQAVVA--------------GLENGGFAVEVDV 67 (263)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH--------------TCTTCCEEEECCT
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH--------------HHhcCCeEEEEeC
Confidence 47899999999999999999999998 67899999863 22322211 1123678899999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CC-ccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IH-LQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~-lk~f 200 (762)
++++ +++++++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+ ..++
T Consensus 68 ~d~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~i 141 (263)
T 3ak4_A 68 TKRA------SVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVI 141 (263)
T ss_dssp TCHH------HHHHHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEE
Confidence 9865 5666555 79999999997542 1346778999999999999988642 12 5799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+.... |. ...|+.||+..|.+++..+.. |++
T Consensus 142 v~isS~~~~~~~----------~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 183 (263)
T 3ak4_A 142 VNTASLAAKVGA----------PL----------------------------LAHYSASKFAVFGWTQALAREMAPKNIR 183 (263)
T ss_dssp EEECCGGGTSCC----------TT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred EEecccccccCC----------CC----------------------------chhHHHHHHHHHHHHHHHHHHHhHcCeE
Confidence 999998654321 10 157999999999988877652 899
Q ss_pred EEEEeeeeeccCCCCCCCCCC--CCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 277 CMILRPSIIIPIWKDPLPGWT--DNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWi--dn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
++++|||.|.++.......|. ..-............ ......++.++|+|++++.++...... ..++
T Consensus 184 v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~p~~~~~~~~dvA~~v~~l~s~~~~~--~tG~ 252 (263)
T 3ak4_A 184 VNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVS---------LTPLGRIEEPEDVADVVVFLASDAARF--MTGQ 252 (263)
T ss_dssp EEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHHH---------TCTTCSCBCHHHHHHHHHHHHSGGGTT--CCSC
T ss_pred EEEEecccccChhhhhhccccccccccCcHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCccccC--CCCC
Confidence 999999988765311000000 000000011111111 112245889999999999988754321 1478
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
++++.++
T Consensus 253 ~~~vdgG 259 (263)
T 3ak4_A 253 GINVTGG 259 (263)
T ss_dssp EEEESSS
T ss_pred EEEECcC
Confidence 9999887
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-17 Score=171.26 Aligned_cols=223 Identities=15% Similarity=0.046 Sum_probs=152.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|... ++++++.+ .+. ....++.++.+|+
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~--G~~V~~~~r~~~-----~~~~~~~~-----~l~------~~~~~~~~~~~D~ 66 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMAIRFATE--KAKVVVNYRSKE-----DEANSVLE-----EIK------KVGGEAIAVKGDV 66 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCH-----HHHHHHHH-----HHH------HTTCEEEEEECCT
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEcCCCh-----HHHHHHHH-----HHH------hcCCceEEEECCC
Confidence 57899999999999999999999998 678999998321 22222111 111 1124688999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CC-ccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IH-LQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~-lk~f 200 (762)
++++ ++.++++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+ ..+|
T Consensus 67 ~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~i 140 (261)
T 1gee_A 67 TVES------DVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTV 140 (261)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEE
Confidence 9865 5555554 78999999997543 1346678999999999998887643 12 5799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+.... ++ ...|+.||+..|.+++..+. .|++
T Consensus 141 v~isS~~~~~~~---------~~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 182 (261)
T 1gee_A 141 INMSSVHEKIPW---------PL-----------------------------FVHYAASKGGMKLMTETLALEYAPKGIR 182 (261)
T ss_dssp EEECCGGGTSCC---------TT-----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred EEeCCHHhcCCC---------CC-----------------------------ccHHHHHHHHHHHHHHHHHHHhcccCeE
Confidence 999998653211 01 15799999988888877654 2899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
++++|||.|.++.... .............. .....+++++|+|++++.++..... ...++++
T Consensus 183 v~~v~Pg~v~t~~~~~-------~~~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~ 244 (261)
T 1gee_A 183 VNNIGPGAINTPINAE-------KFADPEQRADVESM---------IPMGYIGEPEEIAAVAAWLASSEAS--YVTGITL 244 (261)
T ss_dssp EEEEEECSBCSGGGHH-------HHHSHHHHHHHHTT---------CTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEeeCCcCCchhhh-------cccChhHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCcccc--CCCCcEE
Confidence 9999999988763210 00001111111111 1123578999999999998865432 1147899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 245 ~v~gg 249 (261)
T 1gee_A 245 FADGG 249 (261)
T ss_dssp EESTT
T ss_pred EEcCC
Confidence 99887
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-17 Score=172.13 Aligned_cols=221 Identities=13% Similarity=0.088 Sum_probs=154.5
Q ss_pred cCCCEEEEECCC--ChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGAS--GFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGAT--GFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
+++|+||||||+ |+||++++++|++. +.+|+++.|... .++.++++.+ + ..++.++.+
T Consensus 6 l~~k~vlVTGas~~~gIG~~ia~~l~~~--G~~V~~~~r~~~---~~~~~~~l~~---------~------~~~~~~~~~ 65 (261)
T 2wyu_A 6 LSGKKALVMGVTNQRSLGFAIAAKLKEA--GAEVALSYQAER---LRPEAEKLAE---------A------LGGALLFRA 65 (261)
T ss_dssp CTTCEEEEESCCSSSSHHHHHHHHHHHH--TCEEEEEESCGG---GHHHHHHHHH---------H------TTCCEEEEC
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHC--CCEEEEEcCCHH---HHHHHHHHHH---------h------cCCcEEEEC
Confidence 578999999999 99999999999999 778999999752 2333333211 1 124788999
Q ss_pred ecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-----------cccHHHHHHHhHHHHHHHHHHHHHc-CCc
Q psy7542 137 DVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-----------DDYMQTYVFLNTRGTRDMLNLSKQM-IHL 197 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-----------~~~l~~~~~~NV~GT~~LLelA~~~-~~l 197 (762)
|+++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+-
T Consensus 66 D~~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~ 139 (261)
T 2wyu_A 66 DVTQDE------ELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREG 139 (261)
T ss_dssp CTTCHH------HHHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE
T ss_pred CCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccC
Confidence 999865 5555544 68999999997542 2346678999999999999999763 112
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---- 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---- 273 (762)
.++|++||..+.... |. ...|+.||+..|.+++..+..
T Consensus 140 g~iv~isS~~~~~~~----------~~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~ 181 (261)
T 2wyu_A 140 GGIVTLTYYASEKVV----------PK----------------------------YNVMAIAKAALEASVRYLAYELGPK 181 (261)
T ss_dssp EEEEEEECGGGTSBC----------TT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CEEEEEecccccCCC----------CC----------------------------chHHHHHHHHHHHHHHHHHHHHhhh
Confidence 589999997654221 00 147999999999998877653
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+++++++||.|.++..... .........+..+. ....+..++|+|++++.++..... ...+
T Consensus 182 gi~v~~v~Pg~v~t~~~~~~-------~~~~~~~~~~~~~~---------p~~~~~~~~dva~~v~~l~s~~~~--~~tG 243 (261)
T 2wyu_A 182 GVRVNAISAGPVRTVAARSI-------PGFTKMYDRVAQTA---------PLRRNITQEEVGNLGLFLLSPLAS--GITG 243 (261)
T ss_dssp TCEEEEEEECCCCCTGGGGC-------TTHHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred CcEEEEEeeCCCcCchhhhc-------cccHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHcChhhc--CCCC
Confidence 89999999999987643211 11111222211111 112467899999999998865432 1147
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++++.++
T Consensus 244 ~~~~vdgG 251 (261)
T 2wyu_A 244 EVVYVDAG 251 (261)
T ss_dssp CEEEESTT
T ss_pred CEEEECCC
Confidence 89999887
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=173.52 Aligned_cols=217 Identities=18% Similarity=0.154 Sum_probs=131.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ .+ .....++.++.+|+
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~~------~~~~~~~~~~~~D~ 67 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALARE--GAAVVVADINA------EAAEAVAK-----QI------VADGGTAISVAVDV 67 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HH------HHTTCEEEEEECCT
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEcCCH------HHHHHHHH-----HH------HhcCCcEEEEEccC
Confidence 47899999999999999999999999 77889999853 22222211 11 11235788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccC----------ccccHHHHHHHhHHHHHHHHHHHH----HcCCc
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVR----------FDDYMQTYVFLNTRGTRDMLNLSK----QMIHL 197 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~----------f~~~l~~~~~~NV~GT~~LLelA~----~~~~l 197 (762)
++++ +++++++ .+|+|||+||... ..+.++..+++|+.|+.++.+.+. +. +.
T Consensus 68 ~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~ 140 (253)
T 3qiv_A 68 SDPE------SAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKR-GG 140 (253)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TC
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CC
Confidence 9875 5555554 7999999999732 124466789999999776666553 33 45
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---- 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---- 273 (762)
.++|++||..+... .+.|+.||+..|.+++.++..
T Consensus 141 g~iv~isS~~~~~~-----------------------------------------~~~Y~asK~a~~~~~~~la~e~~~~ 179 (253)
T 3qiv_A 141 GAIVNQSSTAAWLY-----------------------------------------SNYYGLAKVGINGLTQQLSRELGGR 179 (253)
T ss_dssp EEEEEECC----------------------------------------------------CCHHHHHHHHHHHHHHTTTT
T ss_pred CEEEEECCccccCC-----------------------------------------CchhHHHHHHHHHHHHHHHHHHhhc
Confidence 78999999865411 156999999999999887763
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+++.+++||.|.++..... .+..+...+..+ .....+..++|+|++++.++...... ..+
T Consensus 180 gi~v~~v~PG~v~t~~~~~~--------~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~s~~~~~--~tG 240 (253)
T 3qiv_A 180 NIRINAIAPGPIDTEANRTT--------TPKEMVDDIVKG---------LPLSRMGTPDDLVGMCLFLLSDEASW--ITG 240 (253)
T ss_dssp TEEEEEEEC------------------------------------------------CCHHHHHHHHHHSGGGTT--CCS
T ss_pred CeEEEEEEecCCcccchhhc--------CcHHHHHHHhcc---------CCCCCCCCHHHHHHHHHHHcCccccC--CCC
Confidence 79999999999987643211 111111111111 11234556789999999888654331 147
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
++|++.++
T Consensus 241 ~~~~vdgG 248 (253)
T 3qiv_A 241 QIFNVDGG 248 (253)
T ss_dssp CEEEC---
T ss_pred CEEEECCC
Confidence 89999887
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-17 Score=171.37 Aligned_cols=220 Identities=14% Similarity=0.042 Sum_probs=151.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|.. ++++++.+ +. . ...++.++.+|+
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~--G~~V~~~~r~~------~~~~~~~~---------~~--~-~~~~~~~~~~D~ 63 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEE--GAKVMITGRHS------DVGEKAAK---------SV--G-TPDQIQFFQHDS 63 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH---------HH--C-CTTTEEEEECCT
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH---------Hh--h-ccCceEEEECCC
Confidence 57899999999999999999999998 67899999863 22222111 00 1 115789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCc-cEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHL-QLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~l-k~f 200 (762)
++++ ++.++++ .+|+|||+||.... .+.++..+++|+.|+..+.+.+... .+. .+|
T Consensus 64 ~~~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~i 137 (251)
T 1zk4_A 64 SDED------GWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASI 137 (251)
T ss_dssp TCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEE
Confidence 9865 5555544 58999999997532 1345678999999988877766431 244 799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH-----c-C
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME-----A-G 274 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~-----~-g 274 (762)
|++||..+..... + ...|+.||+..|.+++.++. . |
T Consensus 138 v~isS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~~a~e~~~~~~~ 179 (251)
T 1zk4_A 138 INMSSIEGFVGDP---------S-----------------------------LGAYNASKGAVRIMSKSAALDCALKDYD 179 (251)
T ss_dssp EEECCGGGTSCCT---------T-----------------------------CHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EEeCCchhccCCC---------C-----------------------------CccchHHHHHHHHHHHHHHHHhcccCCC
Confidence 9999986543211 0 15799999999999876653 2 8
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
++++++|||.|.++..... +......... .......+++++|+|++++.++...... ..++
T Consensus 180 i~v~~v~Pg~v~t~~~~~~---------~~~~~~~~~~--------~~~~~~~~~~~~dva~~~~~l~~~~~~~--~~G~ 240 (251)
T 1zk4_A 180 VRVNTVHPGYIKTPLVDDL---------PGAEEAMSQR--------TKTPMGHIGEPNDIAYICVYLASNESKF--ATGS 240 (251)
T ss_dssp EEEEEEEECCBCCHHHHTS---------TTHHHHHTST--------TTCTTSSCBCHHHHHHHHHHHHSGGGTT--CCSC
T ss_pred eEEEEEeeCcCcchhhhhc---------CchhhhHHHh--------hcCCCCCCcCHHHHHHHHHHHcCccccc--ccCc
Confidence 9999999999987643211 1111111011 1112235889999999999988754321 1478
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
++++.++
T Consensus 241 ~~~v~gG 247 (251)
T 1zk4_A 241 EFVVDGG 247 (251)
T ss_dssp EEEESTT
T ss_pred EEEECCC
Confidence 9999887
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.7e-17 Score=169.52 Aligned_cols=218 Identities=18% Similarity=0.137 Sum_probs=156.9
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.++||+|+||||+|+||++++++|++. +.+|+++.|..... ++..++ ...++.++.+|
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~~--~~~~~~------------------~~~~~~~~~~D 65 (271)
T 3tzq_B 8 ELENKVAIITGACGGIGLETSRVLARA--GARVVLADLPETDL--AGAAAS------------------VGRGAVHHVVD 65 (271)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECTTSCH--HHHHHH------------------HCTTCEEEECC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEcCCHHHH--HHHHHH------------------hCCCeEEEECC
Confidence 358999999999999999999999998 77889999975431 111111 13578899999
Q ss_pred cCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc---------cccHHHHHHHhHHHHHHHHHHH----HHcCCc
Q psy7542 138 VAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF---------DDYMQTYVFLNTRGTRDMLNLS----KQMIHL 197 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f---------~~~l~~~~~~NV~GT~~LLelA----~~~~~l 197 (762)
+++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++ ++. +.
T Consensus 66 v~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~ 138 (271)
T 3tzq_B 66 LTNEV------SVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA-GG 138 (271)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CC
Confidence 99865 5665554 78999999997632 1346678999999999999998 443 55
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---- 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---- 273 (762)
.++|++||..+..... ....|+.||+..+.+++..+..
T Consensus 139 g~iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~ 180 (271)
T 3tzq_B 139 GAIVNISSATAHAAYD--------------------------------------MSTAYACTKAAIETLTRYVATQYGRH 180 (271)
T ss_dssp EEEEEECCGGGTSBCS--------------------------------------SCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CEEEEECCHHHcCCCC--------------------------------------CChHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7999999986543211 0157999999999999877663
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+++++++||.|.++.... . .+........... ....+...+|+|++++.++...... ..+
T Consensus 181 gi~vn~v~PG~v~t~~~~~------~--~~~~~~~~~~~~~---------~~~r~~~p~dvA~~v~~L~s~~~~~--itG 241 (271)
T 3tzq_B 181 GVRCNAIAPGLVRTPRLEV------G--LPQPIVDIFATHH---------LAGRIGEPHEIAELVCFLASDRAAF--ITG 241 (271)
T ss_dssp TEEEEEEEECCBCCTTTC-----------CHHHHHHHHTTS---------TTSSCBCHHHHHHHHHHHHSGGGTT--CCS
T ss_pred CEEEEEEEeCCCcCccccc------c--CCHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccCC--cCC
Confidence 8999999999998864321 0 1122222222211 1234678999999999988765431 257
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++++.+|
T Consensus 242 ~~i~vdGG 249 (271)
T 3tzq_B 242 QVIAADSG 249 (271)
T ss_dssp CEEEESTT
T ss_pred CEEEECCC
Confidence 89999887
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=173.10 Aligned_cols=221 Identities=12% Similarity=0.063 Sum_probs=155.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|... +++++.+ .+ .....++.++.+|+
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~------~~~~~~~-----~~------~~~~~~~~~~~~Dv 70 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKA--GASVVVTDLKSE------GAEAVAA-----AI------RQAGGKAIGLECNV 70 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHH--TCEEEEEESSHH------HHHHHHH-----HH------HHTTCCEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH-----HH------HhcCCcEEEEECCC
Confidence 58999999999999999999999999 778899998532 2222111 11 11236789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~ 202 (762)
++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 71 ~d~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~ 144 (256)
T 3gaf_A 71 TDEQ------HREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILN 144 (256)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 9875 5555544 78999999997542 2456678999999999999998531 24569999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~ 278 (762)
+||..+..... . ...|+.||+..+.+.+..+.. |+++.
T Consensus 145 isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~~~~~la~e~~~~gi~vn 186 (256)
T 3gaf_A 145 ISSMAGENTNV----------R----------------------------MASYGSSKAAVNHLTRNIAFDVGPMGIRVN 186 (256)
T ss_dssp ECCGGGTCCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred EcCHHHcCCCC----------C----------------------------chHHHHHHHHHHHHHHHHHHHHhhhCcEEE
Confidence 99986643211 0 157999999999999877653 89999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
.++||.|.++... ... .......... ......+..++|+|++++.++...... ..++++++
T Consensus 187 ~v~PG~v~T~~~~-------~~~-~~~~~~~~~~---------~~p~~r~~~~~dva~~~~~L~s~~~~~--itG~~i~v 247 (256)
T 3gaf_A 187 AIAPGAIKTDALA-------TVL-TPEIERAMLK---------HTPLGRLGEAQDIANAALFLCSPAAAW--ISGQVLTV 247 (256)
T ss_dssp EEEECCBCCHHHH-------HHC-CHHHHHHHHT---------TCTTSSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEE
T ss_pred EEEEccccCchhh-------hcc-CHHHHHHHHh---------cCCCCCCCCHHHHHHHHHHHcCCcccC--ccCCEEEE
Confidence 9999988654211 000 1111122211 122345789999999999988754331 25789999
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.+|
T Consensus 248 dgG 250 (256)
T 3gaf_A 248 SGG 250 (256)
T ss_dssp STT
T ss_pred CCC
Confidence 988
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-17 Score=171.71 Aligned_cols=223 Identities=17% Similarity=0.123 Sum_probs=153.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ .++ ....++.++.+|+
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~~~------~~~~~~~~~~~D~ 67 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASL--GASVYTCSRNQ------KELNDCLT-----QWR------SKGFKVEASVCDL 67 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHH------HTTCEEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HHH------hcCCcEEEEEcCC
Confidence 57899999999999999999999998 67899999863 22222211 111 1124788999999
Q ss_pred CCCCCCCCHHHHHhhc--------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH---cCCccEE
Q psy7542 139 AVPDLGISAEDRQMLS--------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ---MIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~--------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~---~~~lk~f 200 (762)
++++ +++.++ ..+|+|||+||.... .+.++..+++|+.|+.++++++.. ..+..++
T Consensus 68 ~~~~------~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~i 141 (260)
T 2ae2_A 68 SSRS------ERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNV 141 (260)
T ss_dssp TCHH------HHHHHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEE
Confidence 9865 555554 579999999997542 235667899999999999999853 1256799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+.... |. ...|+.||+..|.+++..+.. |++
T Consensus 142 v~isS~~~~~~~----------~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 183 (260)
T 2ae2_A 142 VFISSVSGALAV----------PY----------------------------EAVYGATKGAMDQLTRCLAFEWAKDNIR 183 (260)
T ss_dssp EEECCGGGTSCC----------TT----------------------------CHHHHHHHHHHHHHHHHHHHHTGGGTEE
T ss_pred EEEcchhhccCC----------CC----------------------------cchHHHHHHHHHHHHHHHHHHHhhcCcE
Confidence 999998654321 10 157999999999999887653 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCch--HHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPT--GLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~--~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
+++++||.|.++.... + ...+. ..+.....+ .....++.++|+|++++.++..... ...++
T Consensus 184 v~~v~Pg~v~t~~~~~---~---~~~~~~~~~~~~~~~~---------~~~~~~~~~~dvA~~v~~l~s~~~~--~~tG~ 246 (260)
T 2ae2_A 184 VNGVGPGVIATSLVEM---T---IQDPEQKENLNKLIDR---------CALRRMGEPKELAAMVAFLCFPAAS--YVTGQ 246 (260)
T ss_dssp EEEEEECSBCSHHHHH---H---TTSHHHHHHHHHHHHT---------STTCSCBCHHHHHHHHHHHHSGGGT--TCCSC
T ss_pred EEEEecCCCCCcchhh---h---ccChhhHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCcccc--CCCCC
Confidence 9999999886542110 0 00010 000011111 1224588999999999988865432 11478
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
++++.++
T Consensus 247 ~~~vdgG 253 (260)
T 2ae2_A 247 IIYVDGG 253 (260)
T ss_dssp EEEESTT
T ss_pred EEEECCC
Confidence 9999887
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=169.82 Aligned_cols=217 Identities=13% Similarity=0.121 Sum_probs=146.0
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEE-eCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEE-EEeec
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYIL-LRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIP-INGDV 138 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~L-vR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~-V~GDl 138 (762)
+|+|+||||||+||++++++|++. +.+|+++ .|.. ++++++.+ .++ ....++.. +.+|+
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~--G~~v~~~~~r~~------~~~~~~~~-----~~~------~~~~~~~~~~~~D~ 61 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAED--GFALAIHYGQNR------EKAEEVAE-----EAR------RRGSPLVAVLGANL 61 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTT--TCEEEEEESSCH------HHHHHHHH-----HHH------HTTCSCEEEEECCT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEcCCCH------HHHHHHHH-----HHH------hcCCceEEEEeccC
Confidence 478999999999999999999998 6788887 6653 22222111 111 11245666 89999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHH----HHcCCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLS----KQMIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA----~~~~~lk~f 200 (762)
++++ +++.++ .++|+|||+||.... .+.++..+++|+.|+.++++.+ ++. +.++|
T Consensus 62 ~~~~------~~~~~~~~~~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~i 134 (245)
T 2ph3_A 62 LEAE------AATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKA-RFGRI 134 (245)
T ss_dssp TSHH------HHHHHHHHHHHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhc-CCCEE
Confidence 9865 455543 479999999997542 2346678999999966555544 443 56899
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... ....|+.||+..|.+++..+.. |++
T Consensus 135 v~~sS~~~~~~~~--------------------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 176 (245)
T 2ph3_A 135 VNITSVVGILGNP--------------------------------------GQANYVASKAGLIGFTRAVAKEYAQRGIT 176 (245)
T ss_dssp EEECCTHHHHCCS--------------------------------------SBHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEeChhhccCCC--------------------------------------CCcchHHHHHHHHHHHHHHHHHHHHcCeE
Confidence 9999985432110 0157999999998888776652 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
++++|||.|.++.... . +.........+. ....+++++|+|++++.++..... ...+++|
T Consensus 177 v~~v~Pg~v~t~~~~~-------~--~~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~--~~~G~~~ 236 (245)
T 2ph3_A 177 VNAVAPGFIETEMTER-------L--PQEVKEAYLKQI---------PAGRFGRPEEVAEAVAFLVSEKAG--YITGQTL 236 (245)
T ss_dssp EEEEEECSBCCHHHHT-------S--CHHHHHHHHHTC---------TTCSCBCHHHHHHHHHHHTSGGGT--TCCSCEE
T ss_pred EEEEEEEeecCcchhh-------c--CHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccc--cccCCEE
Confidence 9999999987763221 0 112222222211 124578999999999998875432 1147899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 237 ~v~gg 241 (245)
T 2ph3_A 237 CVDGG 241 (245)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 99876
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-17 Score=167.77 Aligned_cols=199 Identities=15% Similarity=0.122 Sum_probs=143.3
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCc-----EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENV-----KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v-----~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
+|+||||||||+||++++++|++.|... +|+++.|.. ++++++.+ .+ .....++.++.
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~------~~~~~~~~-----~~------~~~~~~~~~~~ 64 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA------ADLEKISL-----EC------RAEGALTDTIT 64 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH------HHHHHHHH-----HH------HTTTCEEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCH------HHHHHHHH-----HH------HccCCeeeEEE
Confidence 6899999999999999999999994311 889999853 22222211 11 11135788999
Q ss_pred eecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCcc
Q psy7542 136 GDVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQ 198 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk 198 (762)
+|+++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+..
T Consensus 65 ~D~~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ 138 (244)
T 2bd0_A 65 ADISDMA------DVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSG 138 (244)
T ss_dssp CCTTSHH------HHHHHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE
T ss_pred ecCCCHH------HHHHHHHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC
Confidence 9999865 5555544 69999999997643 2356678999999999999988542 2557
Q ss_pred EEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cC
Q psy7542 199 LFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AG 274 (762)
Q Consensus 199 ~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~g 274 (762)
+||++||..+..... + .+.|+.||+..|.+++..+. .|
T Consensus 139 ~iv~isS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~g 180 (244)
T 2bd0_A 139 HIFFITSVAATKAFR---------H-----------------------------SSIYCMSKFGQRGLVETMRLYARKCN 180 (244)
T ss_dssp EEEEECCGGGTSCCT---------T-----------------------------CHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred EEEEEecchhcCCCC---------C-----------------------------CchhHHHHHHHHHHHHHHHHHhhccC
Confidence 999999986643210 0 15799999999999876654 28
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
++++++|||.|.++.....+ .. . ...+++++|+|++++.++.....
T Consensus 181 i~v~~v~Pg~v~t~~~~~~~-------~~-------------------~-~~~~~~~~dva~~~~~l~~~~~~ 226 (244)
T 2bd0_A 181 VRITDVQPGAVYTPMWGKVD-------DE-------------------M-QALMMMPEDIAAPVVQAYLQPSR 226 (244)
T ss_dssp EEEEEEEECCBCSTTTCCCC-------ST-------------------T-GGGSBCHHHHHHHHHHHHTSCTT
T ss_pred cEEEEEECCCccchhhhhcc-------cc-------------------c-cccCCCHHHHHHHHHHHHhCCcc
Confidence 99999999999887532110 00 0 12689999999999999876543
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-17 Score=171.49 Aligned_cols=216 Identities=14% Similarity=0.102 Sum_probs=151.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|..... +.+.+ ....++.++.+|+
T Consensus 10 ~~~k~vlVTGasggiG~~~a~~l~~~--G~~V~~~~r~~~~~---~~~~~-----------------~~~~~~~~~~~D~ 67 (265)
T 2o23_A 10 VKGLVAVITGGASGLGLATAERLVGQ--GASAVLLDLPNSGG---EAQAK-----------------KLGNNCVFAPADV 67 (265)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECTTSSH---HHHHH-----------------HHCTTEEEEECCT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCcHhH---HHHHH-----------------HhCCceEEEEcCC
Confidence 57899999999999999999999998 77899999975431 11111 0124788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------------cccHHHHHHHhHHHHHHHHHHHHHc---C
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------------DDYMQTYVFLNTRGTRDMLNLSKQM---I 195 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------------~~~l~~~~~~NV~GT~~LLelA~~~---~ 195 (762)
++++ +++++++ .+|+|||+||.... .+.+...+++|+.|+.++++++... .
T Consensus 68 ~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~ 141 (265)
T 2o23_A 68 TSEK------DVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQN 141 (265)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS
T ss_pred CCHH------HHHHHHHHHHHHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 9865 5666555 79999999997532 1346678999999999999998753 1
Q ss_pred ------CccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHH
Q psy7542 196 ------HLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTE 269 (762)
Q Consensus 196 ------~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~ 269 (762)
+..+||++||..+..... + ...|+.||+..+.+++.
T Consensus 142 ~~~~~~~~~~iv~isS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~ 183 (265)
T 2o23_A 142 EPDQGGQRGVIINTASVAAFEGQV---------G-----------------------------QAAYSASKGGIVGMTLP 183 (265)
T ss_dssp CCCTTSCCEEEEEECCTHHHHCCT---------T-----------------------------CHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcEEEEeCChhhcCCCC---------C-----------------------------CchhHHHHHHHHHHHHH
Confidence 357899999986542210 0 15799999998888877
Q ss_pred HHH----cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc
Q psy7542 270 YME----AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF 345 (762)
Q Consensus 270 ~~~----~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~ 345 (762)
.+. .|+++++++||.|.++.....+ ........... .....++.++|+|++++.++...
T Consensus 184 la~e~~~~gi~v~~v~Pg~v~t~~~~~~~---------~~~~~~~~~~~--------~~~~~~~~~~dva~~~~~l~~~~ 246 (265)
T 2o23_A 184 IARDLAPIGIRVMTIAPGLFGTPLLTSLP---------EKVCNFLASQV--------PFPSRLGDPAEYAHLVQAIIENP 246 (265)
T ss_dssp HHHHHGGGTEEEEEEEECCBCCC-------------------CHHHHTC--------SSSCSCBCHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcCcEEEEEEeccccCccccccC---------HHHHHHHHHcC--------CCcCCCCCHHHHHHHHHHHhhcC
Confidence 655 2899999999988765322110 00000000100 00134788999999999988654
Q ss_pred cCCCCCCceEEEecCC
Q psy7542 346 LSNPGNTMRVINLTAN 361 (762)
Q Consensus 346 ~~~~~~~~~iyNi~s~ 361 (762)
.. .++++++.++
T Consensus 247 ~~----~G~~i~vdgG 258 (265)
T 2o23_A 247 FL----NGEVIRLDGA 258 (265)
T ss_dssp TC----CSCEEEESTT
T ss_pred cc----CceEEEECCC
Confidence 43 5789999876
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.2e-17 Score=170.34 Aligned_cols=233 Identities=16% Similarity=0.080 Sum_probs=157.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCc-------chHHHHHHHhcChhHHHHHhhhhcccccCCe
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNK-------NSRERLEEIFQSPLYEALKKEQSESAIFEKV 131 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~-------~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV 131 (762)
++||+||||||+|+||++++++|++. +.+|+++.|..... ...++++++.+ .+ .....++
T Consensus 13 l~gk~~lVTGas~gIG~a~a~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~ 79 (280)
T 3pgx_A 13 LQGRVAFITGAARGQGRSHAVRLAAE--GADIIACDICAPVSASVTYAPASPEDLDETAR-----LV------EDQGRKA 79 (280)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHH-----HH------HTTTCCE
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeccccccccccccccCHHHHHHHHH-----HH------HhcCCeE
Confidence 68999999999999999999999998 77889998843211 01233433221 01 1224678
Q ss_pred EEEEeecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---
Q psy7542 132 IPINGDVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM--- 194 (762)
Q Consensus 132 ~~V~GDl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~--- 194 (762)
.++.+|+++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++...
T Consensus 80 ~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~ 153 (280)
T 3pgx_A 80 LTRVLDVRDDA------ALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIE 153 (280)
T ss_dssp EEEECCTTCHH------HHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 99999999875 5555543 78999999997642 2456678999999999999988542
Q ss_pred -CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH-
Q psy7542 195 -IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME- 272 (762)
Q Consensus 195 -~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~- 272 (762)
+.-.++|++||..+..... . ...|+.||+..+.+.+..+.
T Consensus 154 ~~~~g~iv~isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~~~~~la~e 195 (280)
T 3pgx_A 154 AGNGGSIVVVSSSAGLKATP----------G----------------------------NGHYSASKHGLTALTNTLAIE 195 (280)
T ss_dssp HCSCEEEEEECCGGGTSCCT----------T----------------------------BHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcchhhccCCC----------C----------------------------chhHHHHHHHHHHHHHHHHHH
Confidence 2246899999986543211 0 15799999999998887766
Q ss_pred ---cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcC--CeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 273 ---AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKG--IIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 273 ---~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G--~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
.|+++++++||.|.++... ........... ....+.........++.++|+|++++.++.....
T Consensus 196 ~~~~gi~vn~v~PG~v~t~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~dvA~~v~~L~s~~~~ 264 (280)
T 3pgx_A 196 LGEYGIRVNSIHPYSVETPMIE-----------PEAMMEIFARHPSFVHSFPPMPVQPNGFMTADEVADVVAWLAGDGSG 264 (280)
T ss_dssp HGGGTEEEEEEEECSBCSTTCC-----------HHHHHHHHHHCGGGGGGSCCBTTBCSSCBCHHHHHHHHHHHHSGGGT
T ss_pred hhhcCeEEEEEeeCcccCcccc-----------hhhhhhhhhcCchhhhhhhhcccCCCCCCCHHHHHHHHHHHhCcccc
Confidence 2899999999998776422 11111111000 0000000111112488999999999998875543
Q ss_pred CCCCCceEEEecCC
Q psy7542 348 NPGNTMRVINLTAN 361 (762)
Q Consensus 348 ~~~~~~~iyNi~s~ 361 (762)
. ..++++++.++
T Consensus 265 ~--itG~~i~vdGG 276 (280)
T 3pgx_A 265 T--LTGTQIPVDKG 276 (280)
T ss_dssp T--CSSCEEEESTT
T ss_pred C--CCCCEEEECCC
Confidence 1 25789999876
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8e-18 Score=175.47 Aligned_cols=226 Identities=14% Similarity=0.077 Sum_probs=154.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|.. +++++..+ .+. ....++..+.+|+
T Consensus 12 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~l~------~~~~~~~~~~~D~ 72 (260)
T 2zat_A 12 LENKVALVTASTDGIGLAIARRLAQD--GAHVVVSSRKQ------ENVDRTVA-----TLQ------GEGLSVTGTVCHV 72 (260)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHH------HTTCCEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HHH------hcCCceEEEEccC
Confidence 57899999999999999999999998 67899999863 22222111 111 1124788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+..++
T Consensus 73 ~~~~------~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~i 146 (260)
T 2zat_A 73 GKAE------DRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSV 146 (260)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEE
Confidence 9865 5555544 79999999996431 1346678999999999999887531 256799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... + ...|+.||+..|.+++..+.. |++
T Consensus 147 v~isS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 188 (260)
T 2zat_A 147 LIVSSVGAYHPFP---------N-----------------------------LGPYNVSKTALLGLTKNLAVELAPRNIR 188 (260)
T ss_dssp EEECCGGGTSCCT---------T-----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEechhhcCCCC---------C-----------------------------chhHHHHHHHHHHHHHHHHHHhcccCeE
Confidence 9999986643211 0 157999999999999887653 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+++++||.|.++.... .| ........... ......+++++|+|++++.++...... ..++++
T Consensus 189 v~~v~Pg~v~t~~~~~--~~-----~~~~~~~~~~~---------~~~~~~~~~~~dva~~v~~l~s~~~~~--~tG~~~ 250 (260)
T 2zat_A 189 VNCLAPGLIKTNFSQV--LW-----MDKARKEYMKE---------SLRIRRLGNPEDCAGIVSFLCSEDASY--ITGETV 250 (260)
T ss_dssp EEEEEECSBCSSTTHH--HH-----SSHHHHHHHHH---------HHTCSSCBCGGGGHHHHHHHTSGGGTT--CCSCEE
T ss_pred EEEEEECcccCccchh--cc-----cChHHHHHHHh---------cCCCCCCCCHHHHHHHHHHHcCcccCC--ccCCEE
Confidence 9999999887653210 00 00000000100 011235789999999999988654321 147899
Q ss_pred EecCCCCCccc
Q psy7542 357 NLTANKDFQIT 367 (762)
Q Consensus 357 Ni~s~~~~piT 367 (762)
++.++ ..++
T Consensus 251 ~vdgG--~~~s 259 (260)
T 2zat_A 251 VVGGG--TASR 259 (260)
T ss_dssp EESTT--CCCC
T ss_pred EECCC--cccc
Confidence 99988 4443
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-17 Score=171.11 Aligned_cols=238 Identities=12% Similarity=0.026 Sum_probs=149.5
Q ss_pred CCCEEEEECCCChhHHHHHHHHHH-cCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILR-TCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~-~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++|+|+||||||+||++++++|++ . +.+|+++.|... ++++..+ .+. ....++.++.+|+
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~--g~~V~~~~r~~~------~~~~~~~-----~l~------~~~~~~~~~~~Dl 63 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLF--SGDVVLTARDVT------RGQAAVQ-----QLQ------AEGLSPRFHQLDI 63 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHS--SSEEEEEESSHH------HHHHHHH-----HHH------HTTCCCEEEECCT
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhc--CCeEEEEeCChH------HHHHHHH-----HHH------hcCCeeEEEECCC
Confidence 689999999999999999999999 7 678999998632 2222111 111 1125788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYV 203 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~v 203 (762)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++++... ....+||++
T Consensus 64 ~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~ 137 (276)
T 1wma_A 64 DDLQ------SIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV 137 (276)
T ss_dssp TCHH------HHHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEE
Confidence 9865 5665554 79999999997532 2456678999999999999999864 112489999
Q ss_pred eCCcccCCC----cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCC-chhHhhhHHHHHHHHHHHH------
Q psy7542 204 STAYCHPKE----KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFP-NGYAYTKCLCEGVVTEYME------ 272 (762)
Q Consensus 204 SSay~~~~~----~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~p-n~Y~~SK~~aE~lv~~~~~------ 272 (762)
||..+.... ....+.....+.+.+.+........++..+... ....+| +.|+.||+..|.+++.++.
T Consensus 138 sS~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~ 215 (276)
T 1wma_A 138 SSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVH--QKEGWPSSAYGVTKIGVTVLSRIHARKLSEQR 215 (276)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCT--TTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CChhhhcccccCChhHHhhccccccchhhhhhhhhhhhhhhccccc--ccCCCccchhHHHHHHHHHHHHHHHHHhhccc
Confidence 997543210 000011111122222221111111111100000 011122 7899999999988877654
Q ss_pred --cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCC
Q psy7542 273 --AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPG 350 (762)
Q Consensus 273 --~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~ 350 (762)
.|+++++++||.|.++... . ..++.++|+|++++.++..+.....
T Consensus 216 ~~~~i~v~~v~PG~v~t~~~~-------~--------------------------~~~~~~~~~a~~~~~l~~~~~~~~~ 262 (276)
T 1wma_A 216 KGDKILLNACCPGWVRTDMAG-------P--------------------------KATKSPEEGAETPVYLALLPPDAEG 262 (276)
T ss_dssp TTSCCEEEEEECCSBCSTTTC-------T--------------------------TCSBCHHHHTHHHHHHHSCCTTCCC
T ss_pred CCCceEEEEecCCccccCcCC-------c--------------------------cccCChhHhhhhHhhhhcCcccccc
Confidence 2799999999988654211 0 1368999999999999875421111
Q ss_pred CCceEEE
Q psy7542 351 NTMRVIN 357 (762)
Q Consensus 351 ~~~~iyN 357 (762)
..+..++
T Consensus 263 ~~G~~~~ 269 (276)
T 1wma_A 263 PHGQFVS 269 (276)
T ss_dssp CCSCEEE
T ss_pred cCceEec
Confidence 1355555
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=167.09 Aligned_cols=222 Identities=14% Similarity=0.118 Sum_probs=153.1
Q ss_pred cCCCEEEEECCCCh-hHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGF-VGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGF-LG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++|+||||||+|+ ||++++++|++. +.+|+++.|... ++++..+ .++ .....++.++.+|
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~--G~~V~~~~r~~~------~~~~~~~-----~l~-----~~~~~~~~~~~~D 81 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLE--GADVVISDYHER------RLGETRD-----QLA-----DLGLGRVEAVVCD 81 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHT--TCEEEEEESCHH------HHHHHHH-----HHH-----TTCSSCEEEEECC
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHC--CCEEEEecCCHH------HHHHHHH-----HHH-----hcCCCceEEEEeC
Confidence 58999999999985 999999999998 778999998642 2222211 111 1123689999999
Q ss_pred cCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc----CCccE
Q psy7542 138 VAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM----IHLQL 199 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~----~~lk~ 199 (762)
+++++ +++++++ .+|+|||+||.... .+.++..+++|+.|+.++++++... ++..+
T Consensus 82 l~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~ 155 (266)
T 3o38_A 82 VTSTE------AVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGV 155 (266)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEE
T ss_pred CCCHH------HHHHHHHHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeE
Confidence 99865 5555543 68999999997542 2346678999999999999988753 24468
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----gl 275 (762)
+|++||..+..... + ...|+.||+..|.+++..+.. |+
T Consensus 156 iv~~sS~~~~~~~~---------~-----------------------------~~~Y~~sKaa~~~~~~~la~e~~~~gi 197 (266)
T 3o38_A 156 IVNNASVLGWRAQH---------S-----------------------------QSHYAAAKAGVMALTRCSAIEAVEFGV 197 (266)
T ss_dssp EEEECCGGGTCCCT---------T-----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred EEEeCCHHHcCCCC---------C-----------------------------CchHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999986643211 0 157999999999999877652 89
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
.+.+++||.|.++..... .. .... ...........+..++|+|++++.++..... ...+++
T Consensus 198 ~v~~v~PG~v~t~~~~~~-------~~-~~~~---------~~~~~~~~~~r~~~~~dva~~i~~l~s~~~~--~~tG~~ 258 (266)
T 3o38_A 198 RINAVSPSIARHKFLEKT-------SS-SELL---------DRLASDEAFGRAAEPWEVAATIAFLASDYSS--YMTGEV 258 (266)
T ss_dssp EEEEEEECCCCC----------------------------------CCTTSSCCCHHHHHHHHHHHHSGGGT--TCCSCE
T ss_pred EEEEEeCCcccchhhhcc-------Cc-HHHH---------HHHHhcCCcCCCCCHHHHHHHHHHHcCcccc--CccCCE
Confidence 999999998876532210 00 0000 1111223345678999999999998876433 125789
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+++.+|
T Consensus 259 i~vdgG 264 (266)
T 3o38_A 259 VSVSSQ 264 (266)
T ss_dssp EEESSC
T ss_pred EEEcCC
Confidence 999876
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-17 Score=170.87 Aligned_cols=222 Identities=14% Similarity=0.088 Sum_probs=156.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|... ++++..+ .++ .....++.++.+|+
T Consensus 8 l~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~------~~~~~~~-----~l~-----~~~~~~~~~~~~Dv 69 (262)
T 3pk0_A 8 LQGRSVVVTGGTKGIGRGIATVFARA--GANVAVAGRSTA------DIDACVA-----DLD-----QLGSGKVIGVQTDV 69 (262)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHH------HHHHHHH-----HHH-----TTSSSCEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH-----HHH-----hhCCCcEEEEEcCC
Confidence 57999999999999999999999998 678899998642 2222211 111 11125789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 70 ~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv 143 (262)
T 3pk0_A 70 SDRA------QCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVV 143 (262)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9875 5555544 79999999997532 2456678999999999999988653 2457999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+.... .|. ...|+.||+..+.+++..+.. |+++
T Consensus 144 ~isS~~~~~~~---------~~~----------------------------~~~Y~asK~a~~~l~~~la~e~~~~gi~v 186 (262)
T 3pk0_A 144 LTSSITGPITG---------YPG----------------------------WSHYGATKAAQLGFMRTAAIELAPHKITV 186 (262)
T ss_dssp EECCSBTTTBC---------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred EEechhhccCC---------CCC----------------------------ChhhHHHHHHHHHHHHHHHHHHHhhCcEE
Confidence 99998653110 000 157999999999999887763 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
.+++||.|.++.... . ............ ....+...+|+|++++.++...... ..+++++
T Consensus 187 n~v~PG~v~t~~~~~--------~-~~~~~~~~~~~~---------p~~r~~~p~dva~~v~~L~s~~~~~--itG~~i~ 246 (262)
T 3pk0_A 187 NAIMPGNIMTEGLLE--------N-GEEYIASMARSI---------PAGALGTPEDIGHLAAFLATKEAGY--ITGQAIA 246 (262)
T ss_dssp EEEEECSBCCHHHHT--------T-CHHHHHHHHTTS---------TTSSCBCHHHHHHHHHHHHSGGGTT--CCSCEEE
T ss_pred EEEEeCcCcCccccc--------c-CHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCccccC--CcCCEEE
Confidence 999999987753211 0 112222222211 1234678999999999988755431 2578999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 247 vdGG 250 (262)
T 3pk0_A 247 VDGG 250 (262)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9887
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=7.4e-17 Score=166.57 Aligned_cols=220 Identities=13% Similarity=0.062 Sum_probs=154.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|+||||+|+||++++++|++. +.+|+++.|.... .+.+.+.+ .....++.++.+|+
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~--G~~v~~~~r~~~~---~~~~~~~~--------------~~~~~~~~~~~~D~ 63 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASK--GATVVGTATSQAS---AEKFENSM--------------KEKGFKARGLVLNI 63 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSHHH---HHHHHHHH--------------HHTTCCEEEEECCT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHH---HHHHHHHH--------------HhcCCceEEEEecC
Confidence 47899999999999999999999998 7789999986421 11221111 11235789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++++++ .+|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|
T Consensus 64 ~~~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv 137 (247)
T 3lyl_A 64 SDIE------SIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRII 137 (247)
T ss_dssp TCHH------HHHHHHHHHHHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEE
Confidence 9865 5555443 58999999997642 2456678999999999999887542 2446899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+.... | ....|+.||+..+.+++..+. .|+++
T Consensus 138 ~isS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 179 (247)
T 3lyl_A 138 SIGSVVGSAGN----------P----------------------------GQTNYCAAKAGVIGFSKSLAYEVASRNITV 179 (247)
T ss_dssp EECCTHHHHCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEcchhhccCC----------C----------------------------CcHHHHHHHHHHHHHHHHHHHHHHHcCeEE
Confidence 99998653211 0 015799999988888877665 38999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
.+++||.|.++..... ......... .......+..++|+|++++.++...... ..+++++
T Consensus 180 ~~v~PG~v~t~~~~~~---------~~~~~~~~~---------~~~~~~~~~~~~dva~~i~~l~s~~~~~--~tG~~i~ 239 (247)
T 3lyl_A 180 NVVAPGFIATDMTDKL---------TDEQKSFIA---------TKIPSGQIGEPKDIAAAVAFLASEEAKY--ITGQTLH 239 (247)
T ss_dssp EEEEECSBCCTTTTTS---------CHHHHHHHH---------TTSTTCCCBCHHHHHHHHHHHHSGGGTT--CCSCEEE
T ss_pred EEEeeCcEecccchhc---------cHHHHHHHh---------hcCCCCCCcCHHHHHHHHHHHhCCCcCC--ccCCEEE
Confidence 9999999876643211 111111111 1223356889999999999988654431 2478999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 240 vdgG 243 (247)
T 3lyl_A 240 VNGG 243 (247)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9887
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=165.23 Aligned_cols=218 Identities=14% Similarity=0.124 Sum_probs=143.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|..... . ..+..+.+|+
T Consensus 5 l~~k~vlVTGas~giG~~ia~~l~~~--G~~V~~~~r~~~~~------------------------~---~~~~~~~~D~ 55 (250)
T 2fwm_X 5 FSGKNVWVTGAGKGIGYATALAFVEA--GAKVTGFDQAFTQE------------------------Q---YPFATEVMDV 55 (250)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCCCSS------------------------C---CSSEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCchhhh------------------------c---CCceEEEcCC
Confidence 47899999999999999999999998 77899999975310 1 1278889999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHH----HcCCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSK----QMIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~----~~~~lk~f 200 (762)
++++ +++.+++ ++|+|||+|+.... .+.++..+++|+.|+.++++++. +. +..++
T Consensus 56 ~d~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~i 128 (250)
T 2fwm_X 56 ADAA------QVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQ-RGGAI 128 (250)
T ss_dssp TCHH------HHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhc-CCCEE
Confidence 9865 5665554 78999999997542 24567799999999999999883 33 45799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+.... |. ...|+.||+..|.+++..+.. |++
T Consensus 129 v~isS~~~~~~~----------~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 170 (250)
T 2fwm_X 129 VTVASDAAHTPR----------IG----------------------------MSAYGASKAALKSLALSVGLELAGSGVR 170 (250)
T ss_dssp EEECCGGGTSCC----------TT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred EEECchhhCCCC----------CC----------------------------CchHHHHHHHHHHHHHHHHHHhCccCCE
Confidence 999998664321 00 157999999999999887652 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHH-HHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLI-GAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~-~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
++++|||.|.++..... ........ .. ...... .........+...+|+|++++.++...... ..+++
T Consensus 171 v~~v~Pg~v~t~~~~~~-------~~~~~~~~~~~-~~~~~~-~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~--~tG~~ 239 (250)
T 2fwm_X 171 CNVVSPGSTDTDMQRTL-------WVSDDAEEQRI-RGFGEQ-FKLGIPLGKIARPQEIANTILFLASDLASH--ITLQD 239 (250)
T ss_dssp EEEEEECCC---------------------------------------------CHHHHHHHHHHHHSGGGTT--CCSCE
T ss_pred EEEEECCcccCcccccc-------ccChhHHHHHH-hhhhhc-ccccCCCCCCcCHHHHHHHHHHHhCccccC--CCCCE
Confidence 99999999987643211 00000000 00 000000 000011124788999999999988764321 14789
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+++.++
T Consensus 240 i~vdGG 245 (250)
T 2fwm_X 240 IVVDGG 245 (250)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 998876
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-17 Score=173.57 Aligned_cols=221 Identities=11% Similarity=0.104 Sum_probs=153.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|... .++..+++ .....++.++.+|+
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~---~~~~~~~~---------------~~~~~~~~~~~~Dv 88 (273)
T 3uf0_A 29 LAGRTAVVTGAGSGIGRAIAHGYARA--GAHVLAWGRTDG---VKEVADEI---------------ADGGGSAEAVVADL 88 (273)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSTH---HHHHHHHH---------------HTTTCEEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEcCHHH---HHHHHHHH---------------HhcCCcEEEEEecC
Confidence 57999999999999999999999998 678888887532 11211121 11235789999999
Q ss_pred CCCCCCCCHHHHHhhc------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLS------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~ 202 (762)
++++ +++.+. ..+|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 89 ~d~~------~v~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~ 162 (273)
T 3uf0_A 89 ADLE------GAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVT 162 (273)
T ss_dssp TCHH------HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCHH------HHHHHHHHHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 9875 444332 379999999997643 2446778999999999999987431 24578999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~ 278 (762)
+||..+..... . ...|+.||+..+.+++..+.. |+++.
T Consensus 163 isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn 204 (273)
T 3uf0_A 163 IASMLSFQGGR----------N----------------------------VAAYAASKHAVVGLTRALASEWAGRGVGVN 204 (273)
T ss_dssp ECCGGGTSCCS----------S----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred EcchHhcCCCC----------C----------------------------ChhHHHHHHHHHHHHHHHHHHHhhcCcEEE
Confidence 99986543211 0 157999999999998887652 89999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
+++||.|.++.... .............+ .....+..++|+|++++.++...... ..++++++
T Consensus 205 ~v~PG~v~T~~~~~-------~~~~~~~~~~~~~~---------~p~~r~~~pedva~~v~~L~s~~a~~--itG~~i~v 266 (273)
T 3uf0_A 205 ALAPGYVVTANTAA-------LRADDERAAEITAR---------IPAGRWATPEDMVGPAVFLASDAASY--VHGQVLAV 266 (273)
T ss_dssp EEEECSBCSGGGHH-------HHTSHHHHHHHHHH---------STTSSCBCGGGGHHHHHHHHSGGGTT--CCSCEEEE
T ss_pred EEEeCCCcCCchhh-------cccCHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCchhcC--CcCCEEEE
Confidence 99999887653211 00011111111111 11235778999999999988764331 25789999
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.+|
T Consensus 267 dGG 269 (273)
T 3uf0_A 267 DGG 269 (273)
T ss_dssp STT
T ss_pred CcC
Confidence 887
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.7e-17 Score=168.26 Aligned_cols=221 Identities=18% Similarity=0.138 Sum_probs=147.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ ....++.++.+|+
T Consensus 7 l~~k~vlITGas~gIG~~~a~~l~~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~D~ 64 (261)
T 3n74_A 7 LEGKVALITGAGSGFGEGMAKRFAKG--GAKVVIVDRDK------AGAERVAG--------------EIGDAALAVAADI 64 (261)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH--------------HHCTTEEEEECCT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCH------HHHHHHHH--------------HhCCceEEEEecC
Confidence 47899999999999999999999998 77899999863 23333211 1235789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHcC-------C
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQMI-------H 196 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~~-------~ 196 (762)
++++ +++++++ .+|+|||+||.... .+.++..+++|+.|+.++++++...- .
T Consensus 65 ~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~ 138 (261)
T 3n74_A 65 SKEA------DVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQ 138 (261)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCC
Confidence 9865 5555544 68999999997542 24466789999999999988875430 1
Q ss_pred ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---
Q psy7542 197 LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--- 273 (762)
Q Consensus 197 lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--- 273 (762)
..++|++||..+..... . ...|+.||+..+.+++..+..
T Consensus 139 ~~~iv~isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~~~~~la~e~~~ 180 (261)
T 3n74_A 139 ECVILNVASTGAGRPRP----------N----------------------------LAWYNATKGWVVSVTKALAIELAP 180 (261)
T ss_dssp CEEEEEECCTTTTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CeEEEEeCchhhcCCCC----------C----------------------------ccHHHHHHHHHHHHHHHHHHHhhh
Confidence 34699999986543211 0 146999999999998877653
Q ss_pred -CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCC
Q psy7542 274 -GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNT 352 (762)
Q Consensus 274 -glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~ 352 (762)
|+++..++||.|.++......+ . ..... .....+......++.++|+|++++.++..... ...
T Consensus 181 ~gi~v~~v~PG~v~t~~~~~~~~---~--~~~~~---------~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~--~it 244 (261)
T 3n74_A 181 AKIRVVALNPVAGETPLLTTFMG---E--DSEEI---------RKKFRDSIPMGRLLKPDDLAEAAAFLCSPQAS--MIT 244 (261)
T ss_dssp GTEEEEEEEEC---------------------------------------CTTSSCCCHHHHHHHHHHHTSGGGT--TCC
T ss_pred cCcEEEEEecCcccChhhhhhcc---c--CcHHH---------HHHHhhcCCcCCCcCHHHHHHHHHHHcCCccc--CcC
Confidence 8999999999887764321110 0 00000 01111223345688999999999998865432 125
Q ss_pred ceEEEecCC
Q psy7542 353 MRVINLTAN 361 (762)
Q Consensus 353 ~~iyNi~s~ 361 (762)
++++++.++
T Consensus 245 G~~i~vdgG 253 (261)
T 3n74_A 245 GVALDVDGG 253 (261)
T ss_dssp SCEEEESTT
T ss_pred CcEEEecCC
Confidence 789999988
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-16 Score=169.63 Aligned_cols=221 Identities=14% Similarity=0.117 Sum_probs=153.9
Q ss_pred cCCCEEEEECCC--ChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGAS--GFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGAT--GFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
++||+||||||+ |+||++++++|++. +.+|+++.|... ..+.++++.. + ..++.++.+
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~--G~~V~~~~r~~~---~~~~~~~l~~---------~------~~~~~~~~~ 78 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHRE--GAQLAFTYATPK---LEKRVREIAK---------G------FGSDLVVKC 78 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHT--TCEEEEEESSGG---GHHHHHHHHH---------H------TTCCCEEEC
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHc--CCEEEEEeCCHH---HHHHHHHHHH---------h------cCCeEEEEc
Confidence 578999999999 99999999999998 778999999752 2333333211 1 124778999
Q ss_pred ecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-----------cccHHHHHHHhHHHHHHHHHHHHHc-C-C
Q psy7542 137 DVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-----------DDYMQTYVFLNTRGTRDMLNLSKQM-I-H 196 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-----------~~~l~~~~~~NV~GT~~LLelA~~~-~-~ 196 (762)
|+++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... . +
T Consensus 79 Dl~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~ 152 (285)
T 2p91_A 79 DVSLDE------DIKNLKKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGR 152 (285)
T ss_dssp CTTCHH------HHHHHHHHHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTS
T ss_pred CCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc
Confidence 999865 5555543 68999999997542 1346678999999999999999764 1 2
Q ss_pred ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---
Q psy7542 197 LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--- 273 (762)
Q Consensus 197 lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--- 273 (762)
-.++|++||..+.... | ....|+.||+..+.+++..+..
T Consensus 153 ~g~iv~isS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~ 194 (285)
T 2p91_A 153 NGAIVTLSYYGAEKVV----------P----------------------------HYNVMGIAKAALESTVRYLAYDIAK 194 (285)
T ss_dssp CCEEEEEECGGGTSBC----------T----------------------------TTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEccchhccCC----------C----------------------------CccHHHHHHHHHHHHHHHHHHHhcc
Confidence 2699999997654221 0 0157999999999998877652
Q ss_pred -CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCC
Q psy7542 274 -GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNT 352 (762)
Q Consensus 274 -glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~ 352 (762)
|+++++++||.|.++..... .....+........ ....+..++|+|++++.++..... ...
T Consensus 195 ~gi~v~~v~PG~v~t~~~~~~-------~~~~~~~~~~~~~~---------p~~~~~~~~dva~~~~~l~s~~~~--~~t 256 (285)
T 2p91_A 195 HGHRINAISAGPVKTLAAYSI-------TGFHLLMEHTTKVN---------PFGKPITIEDVGDTAVFLCSDWAR--AIT 256 (285)
T ss_dssp TTCEEEEEEECCCCCSCC--C-------TTHHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHTSGGGT--TCC
T ss_pred cCcEEEEEEeCcccCchhhcc-------cchHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCCccc--CCC
Confidence 89999999999987643211 11111222111111 112367899999999998865432 114
Q ss_pred ceEEEecCC
Q psy7542 353 MRVINLTAN 361 (762)
Q Consensus 353 ~~iyNi~s~ 361 (762)
++++++.++
T Consensus 257 G~~~~vdgg 265 (285)
T 2p91_A 257 GEVVHVDNG 265 (285)
T ss_dssp SCEEEESTT
T ss_pred CCEEEECCC
Confidence 788999877
|
| >2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.3e-18 Score=157.75 Aligned_cols=100 Identities=25% Similarity=0.423 Sum_probs=90.3
Q ss_pred CCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhhhcccc
Q psy7542 532 CEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQWLGLNN 611 (762)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (762)
.+++|++|.|.|...+..|.|.||||||..||+ ++++.+
T Consensus 28 ~~~~~~~Y~I~v~~~~~~~~V~RRYSdF~~Lh~-----------------------------~L~~~~------------ 66 (128)
T 2ett_A 28 PEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHK-----------------------------RIKKLY------------ 66 (128)
T ss_dssp SSCCCCEEEEEEEETTEEEEEEEEHHHHHHHHH-----------------------------HHHTTS------------
T ss_pred CCCCEEEEEEEEEECCcEEEEECCHHHHHHHHH-----------------------------HHHHHC------------
Confidence 568999999999999999999999999999998 666654
Q ss_pred cccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHHhcCCCh-HHHHhhhCCC
Q psy7542 612 VLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGPSR-NQVLAFLGVN 690 (762)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 690 (762)
..|.||+|++.+.+++++|+||.+||.||+.++..+..+ ..+.+||..+
T Consensus 67 ------------------------------~iP~lP~K~~~~~~~~~ie~Rr~~Le~yL~~ll~~p~~~s~~l~~FL~~~ 116 (128)
T 2ett_A 67 ------------------------------KVPDFPSKRLPNWRTRGLEQRRQGLEAYIQGILYLNQEVPKELLEFLRLR 116 (128)
T ss_dssp ------------------------------SCCCCCCSSCCCSSSSCHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHTCT
T ss_pred ------------------------------CCCCCCCCccCCCCHHHHHHHHHHHHHHHHHHHhCchhcCHHHHHhcCCc
Confidence 579999999999999999999999999999999876544 8999999999
Q ss_pred CCCCCCCCCcccccccccccccCCC
Q psy7542 691 SKNSQPQPSISLHHYHFVFRTKTND 715 (762)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (762)
.|+.++|++++|
T Consensus 117 -------------~~~~~~k~~~~~ 128 (128)
T 2ett_A 117 -------------HFPTDPKASNWG 128 (128)
T ss_dssp -------------TCCCCSTTCSCC
T ss_pred -------------cCCCcccccCCC
Confidence 888888888875
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=7.7e-17 Score=170.56 Aligned_cols=220 Identities=12% Similarity=0.104 Sum_probs=150.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|+||||||+||++++++|++. +.+|+++.|.. ++++++.+ .+ .....++.++.+|+
T Consensus 42 l~~k~vlITGasggIG~~la~~L~~~--G~~V~~~~r~~------~~~~~~~~-----~l------~~~~~~~~~~~~Dl 102 (285)
T 2c07_A 42 GENKVALVTGAGRGIGREIAKMLAKS--VSHVICISRTQ------KSCDSVVD-----EI------KSFGYESSGYAGDV 102 (285)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTT--SSEEEEEESSH------HHHHHHHH-----HH------HTTTCCEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHc--CCEEEEEcCCH------HHHHHHHH-----HH------HhcCCceeEEECCC
Confidence 57899999999999999999999998 67888887753 22222111 11 11135788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++.++ ..+|+|||+||.... .+.++..+++|+.|+.++++++... .+..+||
T Consensus 103 ~d~~------~v~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv 176 (285)
T 2c07_A 103 SKKE------EISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRII 176 (285)
T ss_dssp TCHH------HHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEE
Confidence 9865 555554 468999999997642 2356678999999988888877531 2567999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+.... | ....|+.||+..|.+++..+.. |+++
T Consensus 177 ~isS~~~~~~~----------~----------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v 218 (285)
T 2c07_A 177 NISSIVGLTGN----------V----------------------------GQANYSSSKAGVIGFTKSLAKELASRNITV 218 (285)
T ss_dssp EECCTHHHHCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECChhhccCC----------C----------------------------CCchHHHHHHHHHHHHHHHHHHHHHhCcEE
Confidence 99998543211 0 0157999999999888777652 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
+++|||.|.++..... ............ ....++.++|+|++++.++...... ..+++++
T Consensus 219 ~~v~Pg~v~t~~~~~~---------~~~~~~~~~~~~---------~~~~~~~~~dvA~~~~~l~~~~~~~--~~G~~i~ 278 (285)
T 2c07_A 219 NAIAPGFISSDMTDKI---------SEQIKKNIISNI---------PAGRMGTPEEVANLACFLSSDKSGY--INGRVFV 278 (285)
T ss_dssp EEEEECSBCC-----C---------CHHHHHHHHTTC---------TTSSCBCHHHHHHHHHHHHSGGGTT--CCSCEEE
T ss_pred EEEEeCcEecCchhhc---------CHHHHHHHHhhC---------CCCCCCCHHHHHHHHHHHhCCCcCC--CCCCEEE
Confidence 9999999876642210 112222222111 1234889999999999988754321 1478999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 279 v~gG 282 (285)
T 2c07_A 279 IDGG 282 (285)
T ss_dssp ESTT
T ss_pred eCCC
Confidence 9876
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=166.65 Aligned_cols=216 Identities=13% Similarity=0.025 Sum_probs=149.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|.. ++++++.+ ....++.++.+|+
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~D~ 60 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAA--GARVVLADVLD------EEGAATAR--------------ELGDAARYQHLDV 60 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH--------------TTGGGEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH--------------HhCCceeEEEecC
Confidence 57899999999999999999999998 77889999863 23333221 1124688899999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHH----HHcCCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLS----KQMIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA----~~~~~lk~f 200 (762)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+..+.+.+ ++. +..++
T Consensus 61 ~~~~------~~~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~i 133 (254)
T 1hdc_A 61 TIEE------DWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA-GGGSI 133 (254)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEE
Confidence 9865 5665554 79999999997542 1356778999999998655544 443 46799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... + ...|+.||+..|.+.+..+.. |++
T Consensus 134 v~isS~~~~~~~~---------~-----------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~ 175 (254)
T 1hdc_A 134 VNISSAAGLMGLA---------L-----------------------------TSSYGASKWGVRGLSKLAAVELGTDRIR 175 (254)
T ss_dssp EEECCGGGTSCCT---------T-----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEECchhhccCCC---------C-----------------------------chhHHHHHHHHHHHHHHHHHHhhhcCeE
Confidence 9999986643210 0 157999999999998877652 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccc-cHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFL-PVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~V-pVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
++++|||.|.++.... ........+ ........+. +.+|+|++++.++...... ..+++
T Consensus 176 v~~v~Pg~v~t~~~~~-----------------~~~~~~~~~-~~~~p~~~~~~~~~dvA~~v~~l~s~~~~~--~tG~~ 235 (254)
T 1hdc_A 176 VNSVHPGMTYTPMTAE-----------------TGIRQGEGN-YPNTPMGRVGNEPGEIAGAVVKLLSDTSSY--VTGAE 235 (254)
T ss_dssp EEEEEECSBCCHHHHH-----------------HTCCCSTTS-CTTSTTSSCB-CHHHHHHHHHHHHSGGGTT--CCSCE
T ss_pred EEEEecccCcCccccc-----------------cchhHHHHH-HhcCCCCCCCCCHHHHHHHHHHHhCchhcC--CCCCE
Confidence 9999999887653110 000000000 0001112366 8999999999988754321 14789
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+++.++
T Consensus 236 ~~vdgG 241 (254)
T 1hdc_A 236 LAVDGG 241 (254)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 999877
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.1e-17 Score=168.47 Aligned_cols=221 Identities=14% Similarity=0.082 Sum_probs=153.5
Q ss_pred cCCCEEEEECCC--ChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGAS--GFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGAT--GFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
+++|+||||||+ |+||++++++|++. +.+|+++.|... .++.++++.. + .....++.+
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~--G~~V~~~~r~~~---~~~~~~~l~~---------~------~~~~~~~~~ 66 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDK---LKGRVEEFAA---------Q------LGSDIVLQC 66 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHT--TCEEEEEESSTT---THHHHHHHHH---------H------TTCCCEEEC
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHC--CCEEEEEcCcHH---HHHHHHHHHH---------h------cCCcEEEEc
Confidence 578999999999 99999999999998 778999999752 2233333211 1 123478899
Q ss_pred ecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc------------cccHHHHHHHhHHHHHHHHHHHHHc-CC
Q psy7542 137 DVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF------------DDYMQTYVFLNTRGTRDMLNLSKQM-IH 196 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f------------~~~l~~~~~~NV~GT~~LLelA~~~-~~ 196 (762)
|+++++ +++++++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+
T Consensus 67 D~~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~ 140 (265)
T 1qsg_A 67 DVAEDA------SIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP 140 (265)
T ss_dssp CTTCHH------HHHHHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE
T ss_pred cCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 999865 5555443 68999999997541 1345678999999999999999763 11
Q ss_pred ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---
Q psy7542 197 LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--- 273 (762)
Q Consensus 197 lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--- 273 (762)
-.++|++||..+..... + ...|+.||+..|.+++..+..
T Consensus 141 ~g~iv~isS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~ 182 (265)
T 1qsg_A 141 GSALLTLSYLGAERAIP---------N-----------------------------YNVMGLAKASLEANVRYMANAMGP 182 (265)
T ss_dssp EEEEEEEECGGGTSBCT---------T-----------------------------TTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcchhhccCCC---------C-----------------------------chHHHHHHHHHHHHHHHHHHHhhh
Confidence 25899999976542210 0 157999999999999887653
Q ss_pred -CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCC
Q psy7542 274 -GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNT 352 (762)
Q Consensus 274 -glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~ 352 (762)
|+++++++||.|.++.... .............+. ....+..++|+|++++.++..... ...
T Consensus 183 ~gi~v~~v~PG~v~t~~~~~-------~~~~~~~~~~~~~~~---------p~~~~~~~~dva~~v~~l~s~~~~--~~t 244 (265)
T 1qsg_A 183 EGVRVNAISAGPIRTLAASG-------IKDFRKMLAHCEAVT---------PIRRTVTIEDVGNSAAFLCSDLSA--GIS 244 (265)
T ss_dssp TTEEEEEEEECCCCCTTGGG-------STTHHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHTSGGGT--TCC
T ss_pred cCeEEEEEEeCCCccchhhc-------ccccHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHhCchhc--Ccc
Confidence 8999999999998764321 111111222211111 112467899999999998865432 124
Q ss_pred ceEEEecCC
Q psy7542 353 MRVINLTAN 361 (762)
Q Consensus 353 ~~iyNi~s~ 361 (762)
++++++.++
T Consensus 245 G~~~~vdgG 253 (265)
T 1qsg_A 245 GEVVHVDGG 253 (265)
T ss_dssp SCEEEESTT
T ss_pred CCEEEECCC
Confidence 789999887
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-16 Score=166.33 Aligned_cols=226 Identities=12% Similarity=0.068 Sum_probs=151.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.. +++++..+ .+. ....++.++.+|+
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~~~------~~~~~~~~~~~D~ 79 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGL--GARVYTCSRNE------KELDECLE-----IWR------EKGLNVEGSVCDL 79 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHH------HTTCCEEEEECCT
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HHH------hcCCceEEEECCC
Confidence 57899999999999999999999998 67899999863 22222211 111 1135788999999
Q ss_pred CCCCCCCCHHHHHhhc--------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS--------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~--------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
++++ +++.++ ..+|++||+||.... .+.++..+++|+.|+.++++++... .+..++
T Consensus 80 ~~~~------~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~i 153 (273)
T 1ae1_A 80 LSRT------ERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNV 153 (273)
T ss_dssp TCHH------HHHHHHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEE
Confidence 9865 555544 579999999997532 2356778999999999999988421 245799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... . ...|+.||+..|.+.+..+.. |++
T Consensus 154 v~isS~~~~~~~~----------~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~ 195 (273)
T 1ae1_A 154 IFLSSIAGFSALP----------S----------------------------VSLYSASKGAINQMTKSLACEWAKDNIR 195 (273)
T ss_dssp EEECCGGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEcCHhhcCCCC----------C----------------------------cchhHHHHHHHHHHHHHHHHHHhhcCcE
Confidence 9999987643211 0 157999999999998877652 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+++++||.|.++...... ................. ....+..++|+|++++.++..... ...++++
T Consensus 196 v~~v~Pg~v~t~~~~~~~---~~~~~~~~~~~~~~~~~---------p~~r~~~p~dvA~~v~~l~s~~~~--~~tG~~i 261 (273)
T 1ae1_A 196 VNSVAPGVILTPLVETAI---KKNPHQKEEIDNFIVKT---------PMGRAGKPQEVSALIAFLCFPAAS--YITGQII 261 (273)
T ss_dssp EEEEEECSBC----------------CHHHHHHHHHHS---------TTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEEeCCCcCchhhhhh---hcccCcHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccc--CcCCCEE
Confidence 999999999876432110 00000111111111110 112478899999999988865432 1147899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 262 ~vdGG 266 (273)
T 1ae1_A 262 WADGG 266 (273)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 99877
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-17 Score=173.24 Aligned_cols=229 Identities=11% Similarity=0.074 Sum_probs=153.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ .++ ....++.++.+|+
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~l~------~~~~~~~~~~~Dv 80 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKE--GLRVFVCARGE------EGLRTTLK-----ELR------EAGVEADGRTCDV 80 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHH------HTTCCEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HHH------hcCCceEEEECCC
Confidence 57899999999999999999999998 67899999864 22222111 111 1125788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-----CCccE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-----IHLQL 199 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-----~~lk~ 199 (762)
++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+..+
T Consensus 81 ~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~ 154 (277)
T 2rhc_B 81 RSVP------EIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGR 154 (277)
T ss_dssp TCHH------HHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeE
Confidence 9865 5555443 68999999997542 1346678999999999999998653 14579
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----gl 275 (762)
||++||..+.... |. ...|+.||+..|.+++..+.. |+
T Consensus 155 iv~isS~~~~~~~----------~~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi 196 (277)
T 2rhc_B 155 IVNIASTGGKQGV----------VH----------------------------AAPYSASKHGVVGFTKALGLELARTGI 196 (277)
T ss_dssp EEEECCGGGTSCC----------TT----------------------------CHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred EEEECccccccCC----------CC----------------------------CccHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999998654221 10 157999999999998887652 79
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCC--chHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNING--PTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~g--p~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
+++++|||.|.++.......-.....+ .......... ......++.++|+|++++.++...... ..+
T Consensus 197 ~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~p~~r~~~~~dvA~~v~~l~s~~~~~--~tG 265 (277)
T 2rhc_B 197 TVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITA---------RVPIGRYVQPSEVAEMVAYLIGPGAAA--VTA 265 (277)
T ss_dssp EEEEEEECSBCSHHHHHHHHHHHHHHTCCHHHHHHHHHH---------HSTTSSCBCHHHHHHHHHHHHSGGGTT--CCS
T ss_pred EEEEEecCcCcCchhhhhhhhcccccccchHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCchhcC--CCC
Confidence 999999998866421100000000000 0000011110 112245889999999999988654321 147
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++++.++
T Consensus 266 ~~~~vdGG 273 (277)
T 2rhc_B 266 QALNVCGG 273 (277)
T ss_dssp CEEEESTT
T ss_pred cEEEECCC
Confidence 89999876
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-17 Score=174.23 Aligned_cols=222 Identities=12% Similarity=0.060 Sum_probs=156.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|.... ..+.+.+.. .....++.++.+|+
T Consensus 45 l~gk~vlVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~--~~~~~~~~~--------------~~~~~~~~~~~~Dv 106 (291)
T 3ijr_A 45 LKGKNVLITGGDSGIGRAVSIAFAKE--GANIAIAYLDEEG--DANETKQYV--------------EKEGVKCVLLPGDL 106 (291)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCHH--HHHHHHHHH--------------HTTTCCEEEEESCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCchH--HHHHHHHHH--------------HhcCCcEEEEECCC
Confidence 68999999999999999999999998 7788999986531 112222211 12236889999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~ 202 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++... ..-.++|+
T Consensus 107 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~ 180 (291)
T 3ijr_A 107 SDEQ------HCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIIN 180 (291)
T ss_dssp TSHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEE
Confidence 9865 5555544 68999999997532 2456778999999999999999763 23358999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~ 278 (762)
+||..+..... ....|+.||+..|.+++..+.. |+++.
T Consensus 181 isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn 222 (291)
T 3ijr_A 181 TASIVAYEGNE--------------------------------------TLIDYSATKGAIVAFTRSLSQSLVQKGIRVN 222 (291)
T ss_dssp ECCTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred EechHhcCCCC--------------------------------------CChhHHHHHHHHHHHHHHHHHHHhhcCEEEE
Confidence 99985532110 0157999999999998877663 89999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
+++||.|.++... ... ......... .......+..++|+|++++.++...... ..++++++
T Consensus 223 ~v~PG~v~T~~~~-------~~~-~~~~~~~~~---------~~~p~~r~~~p~dvA~~v~~L~s~~~~~--itG~~i~v 283 (291)
T 3ijr_A 223 GVAPGPIWTPLIP-------SSF-DEKKVSQFG---------SNVPMQRPGQPYELAPAYVYLASSDSSY--VTGQMIHV 283 (291)
T ss_dssp EEEECSBCSTHHH-------HHS-CHHHHHHTT---------TTSTTSSCBCGGGTHHHHHHHHSGGGTT--CCSCEEEE
T ss_pred EEeeCCCcCCccc-------ccC-CHHHHHHHH---------ccCCCCCCcCHHHHHHHHHHHhCCccCC--CcCCEEEE
Confidence 9999988765311 000 011111111 1223345778999999999988765431 25789999
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.+|
T Consensus 284 dGG 286 (291)
T 3ijr_A 284 NGG 286 (291)
T ss_dssp SSS
T ss_pred CCC
Confidence 887
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=167.31 Aligned_cols=220 Identities=15% Similarity=0.094 Sum_probs=152.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|..... +.+.+.+ .....++.++.+|+
T Consensus 32 l~~k~vlITGasggIG~~la~~L~~~--G~~V~~~~r~~~~~---~~~~~~~--------------~~~~~~~~~~~~Dl 92 (279)
T 3ctm_A 32 LKGKVASVTGSSGGIGWAVAEAYAQA--GADVAIWYNSHPAD---EKAEHLQ--------------KTYGVHSKAYKCNI 92 (279)
T ss_dssp CTTCEEEETTTTSSHHHHHHHHHHHH--TCEEEEEESSSCCH---HHHHHHH--------------HHHCSCEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHH---HHHHHHH--------------HhcCCcceEEEeec
Confidence 57899999999999999999999999 67899999975431 2222211 11135788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc------c---ccHHHHHHHhHHH----HHHHHHHHHHcCCcc
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF------D---DYMQTYVFLNTRG----TRDMLNLSKQMIHLQ 198 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f------~---~~l~~~~~~NV~G----T~~LLelA~~~~~lk 198 (762)
++++ +++++++ .+|+|||+||.... + +.++..+++|+.| ++.+++.+++. +..
T Consensus 93 ~~~~------~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~~ 165 (279)
T 3ctm_A 93 SDPK------SVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKN-GKG 165 (279)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCC
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCC
Confidence 9865 5555544 48999999997543 2 2355689999999 56677777665 568
Q ss_pred EEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----C
Q psy7542 199 LFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----G 274 (762)
Q Consensus 199 ~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----g 274 (762)
+||++||..+..... .+ + ...|+.||+..|.+++.++.. +
T Consensus 166 ~iv~isS~~~~~~~~--------~~--~--------------------------~~~Y~~sK~a~~~~~~~la~e~~~~~ 209 (279)
T 3ctm_A 166 SLIITSSISGKIVNI--------PQ--L--------------------------QAPYNTAKAACTHLAKSLAIEWAPFA 209 (279)
T ss_dssp EEEEECCCTTSCC-----------C--C--------------------------HHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred eEEEECchHhccCCC--------CC--C--------------------------cccHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999986542200 00 0 157999999999999988763 6
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
++++++||.|.++... . . ........... .....+++++|+|++++.++..... ...++
T Consensus 210 -~v~~v~Pg~v~t~~~~-------~-~-~~~~~~~~~~~---------~p~~~~~~~~dvA~~~~~l~s~~~~--~~tG~ 268 (279)
T 3ctm_A 210 -RVNTISPGYIDTDITD-------F-A-SKDMKAKWWQL---------TPLGREGLTQELVGGYLYLASNAST--FTTGS 268 (279)
T ss_dssp -EEEEEEECSBSSTTTS-------S-C-CHHHHHHHHHH---------STTCSCBCGGGTHHHHHHHHSGGGT--TCCSC
T ss_pred -CEEEEeccCCcccccc-------c-c-ChHHHHHHHHh---------CCccCCcCHHHHHHHHHHHhCcccc--CccCC
Confidence 9999999988765321 0 1 11221111110 0113478899999999998875432 12478
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
++++.++
T Consensus 269 ~i~vdgG 275 (279)
T 3ctm_A 269 DVVIDGG 275 (279)
T ss_dssp EEEESTT
T ss_pred EEEECCC
Confidence 9999887
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=165.99 Aligned_cols=209 Identities=12% Similarity=0.114 Sum_probs=147.3
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCC-cEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCEN-VKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~-v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
..+++|+||||||||+||++++++|++.+.. .+|+++.|...... .++++.. ...++.++.
T Consensus 17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~---~~~~l~~---------------~~~~~~~~~ 78 (267)
T 1sny_A 17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK---ELEDLAK---------------NHSNIHILE 78 (267)
T ss_dssp ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCH---HHHHHHH---------------HCTTEEEEE
T ss_pred cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhH---HHHHhhc---------------cCCceEEEE
Confidence 3468899999999999999999999998421 69999999765432 2222211 125789999
Q ss_pred eecCCCCCCCCHHHHHhhcC---------CccEEEEcccccC-c-------cccHHHHHHHhHHHHHHHHHHHHHc----
Q psy7542 136 GDVAVPDLGISAEDRQMLSE---------TIHIVYHIAATVR-F-------DDYMQTYVFLNTRGTRDMLNLSKQM---- 194 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l~~---------~vDiViH~AA~v~-f-------~~~l~~~~~~NV~GT~~LLelA~~~---- 194 (762)
+|+++++ +++.+++ .+|+|||+||... . .+.+...+++|+.|+.++++++...
T Consensus 79 ~Dl~~~~------~v~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~ 152 (267)
T 1sny_A 79 IDLRNFD------AYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKA 152 (267)
T ss_dssp CCTTCGG------GHHHHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred ecCCChH------HHHHHHHHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhc
Confidence 9999876 5555554 7999999999765 1 2456678999999999999988653
Q ss_pred ------CC----ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHH
Q psy7542 195 ------IH----LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCE 264 (762)
Q Consensus 195 ------~~----lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE 264 (762)
+. ..+||++||..+...... ..+ ...|+.||+..|
T Consensus 153 ~~~~~~~~~~~~~~~iv~isS~~~~~~~~~------~~~-----------------------------~~~Y~~sK~a~~ 197 (267)
T 1sny_A 153 AKANESQPMGVGRAAIINMSSILGSIQGNT------DGG-----------------------------MYAYRTSKSALN 197 (267)
T ss_dssp HHHTTTSCSSTTTCEEEEECCGGGCSTTCC------SCC-----------------------------CHHHHHHHHHHH
T ss_pred ccccccccccCCCceEEEEecccccccCCC------CCC-----------------------------chHHHHHHHHHH
Confidence 10 368999999865432210 001 147999999999
Q ss_pred HHHHHHHHc----CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHH
Q psy7542 265 GVVTEYMEA----GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLL 340 (762)
Q Consensus 265 ~lv~~~~~~----glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~ 340 (762)
.+++.++.. |++++++|||.|..+... . ...+..+++|+.++.
T Consensus 198 ~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-----------~----------------------~~~~~~~~~a~~~~~ 244 (267)
T 1sny_A 198 AATKSLSVDLYPQRIMCVSLHPGWVKTDMGG-----------S----------------------SAPLDVPTSTGQIVQ 244 (267)
T ss_dssp HHHHHHHHHHGGGTCEEEEECCCSBCSTTTC-----------T----------------------TCSBCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCcEEEEeCCcceecCCCC-----------C----------------------CCCCCHHHHHHHHHH
Confidence 999887653 899999999987544211 0 124778999999999
Q ss_pred HhhcccCCCCCCceEEEec
Q psy7542 341 STWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 341 a~~~~~~~~~~~~~iyNi~ 359 (762)
++...... ..+..+++.
T Consensus 245 ~~~~~~~~--~~G~~~~~~ 261 (267)
T 1sny_A 245 TISKLGEK--QNGGFVNYD 261 (267)
T ss_dssp HHHHCCGG--GTTCEECTT
T ss_pred HHHhcCcC--CCCcEEccC
Confidence 98764331 134555543
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-16 Score=166.03 Aligned_cols=221 Identities=14% Similarity=0.113 Sum_probs=152.2
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+|+|+||||+|+||++++++|++. +.+|+++.|.... ..+.+.+.. .....++.++.+|++
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~--G~~v~~~~~~~~~--~~~~~~~~~--------------~~~~~~~~~~~~Dl~ 67 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAK--GYSVTVTYHSDTT--AMETMKETY--------------KDVEERLQFVQADVT 67 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHH--HHHHHHHHT--------------GGGGGGEEEEECCTT
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHC--CCEEEEEcCCChH--HHHHHHHHH--------------HhcCCceEEEEecCC
Confidence 5789999999999999999999998 7788888776421 222232222 122357999999999
Q ss_pred CCCCCCCHHHHHhhcC-------CccEEEEccccc--C---c----cccHHHHHHHhHHHHHHHHHHH----HHcCCccE
Q psy7542 140 VPDLGISAEDRQMLSE-------TIHIVYHIAATV--R---F----DDYMQTYVFLNTRGTRDMLNLS----KQMIHLQL 199 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~-------~vDiViH~AA~v--~---f----~~~l~~~~~~NV~GT~~LLelA----~~~~~lk~ 199 (762)
+++ +++++++ .+|+|||+||.. . + .+.++..+++|+.|+.++++++ ++. +..+
T Consensus 68 ~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~ 140 (264)
T 3i4f_A 68 KKE------DLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQ-NFGR 140 (264)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEE
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCCe
Confidence 876 5555554 789999999932 1 1 2446778999999999999998 343 5578
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 275 (762)
+|++||..+..... .+ ....|+.||+..+.+++..+. .|+
T Consensus 141 iv~iss~~~~~~~~--------~~----------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi 184 (264)
T 3i4f_A 141 IINYGFQGADSAPG--------WI----------------------------YRSAFAAAKVGLVSLTKTVAYEEAEYGI 184 (264)
T ss_dssp EEEECCTTGGGCCC--------CT----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred EEEEeechhcccCC--------CC----------------------------CCchhHHHHHHHHHHHHHHHHHhhhcCc
Confidence 99999874321110 00 015799999999998887765 289
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
++++++||.|.++..... ...... ... .......+..++|+|++++.++...... ..+++
T Consensus 185 ~v~~v~PG~v~t~~~~~~---------~~~~~~----~~~-----~~~p~~r~~~~~dva~~v~~l~s~~~~~--itG~~ 244 (264)
T 3i4f_A 185 TANMVCPGDIIGEMKEAT---------IQEARQ----LKE-----HNTPIGRSGTGEDIARTISFLCEDDSDM--ITGTI 244 (264)
T ss_dssp EEEEEEECCCCGGGGSCC---------HHHHHH----C-------------CCCCHHHHHHHHHHHHSGGGTT--CCSCE
T ss_pred EEEEEccCCccCccchhc---------cHHHHH----HHh-----hcCCCCCCcCHHHHHHHHHHHcCcccCC--CCCcE
Confidence 999999999987643211 111111 110 1112235788999999999988765431 25789
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+++.+|
T Consensus 245 i~vdGG 250 (264)
T 3i4f_A 245 IEVTGA 250 (264)
T ss_dssp EEESCS
T ss_pred EEEcCc
Confidence 999887
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-17 Score=166.65 Aligned_cols=209 Identities=11% Similarity=0.076 Sum_probs=141.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++.+...+|+++.|..... +.+.+ . ...++.++.+|+
T Consensus 1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~---~~l~~----------------~-~~~~~~~~~~D~ 60 (250)
T 1yo6_A 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA---TELKS----------------I-KDSRVHVLPLTV 60 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC---HHHHT----------------C-CCTTEEEEECCT
T ss_pred CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHH---HHHHh----------------c-cCCceEEEEeec
Confidence 367899999999999999999999983117899999964321 12211 0 135789999999
Q ss_pred CCCCCCCCHHHHHhhcC---------CccEEEEcccccC-c-------cccHHHHHHHhHHHHHHHHHHHHHc---C---
Q psy7542 139 AVPDLGISAEDRQMLSE---------TIHIVYHIAATVR-F-------DDYMQTYVFLNTRGTRDMLNLSKQM---I--- 195 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~---------~vDiViH~AA~v~-f-------~~~l~~~~~~NV~GT~~LLelA~~~---~--- 195 (762)
++++ ++..+++ .+|+|||+||... . .+.++..+++|+.|+.++++++... .
T Consensus 61 ~~~~------~~~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~ 134 (250)
T 1yo6_A 61 TCDK------SLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASK 134 (250)
T ss_dssp TCHH------HHHHHHHHHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHS
T ss_pred CCHH------HHHHHHHHHHHhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccc
Confidence 9865 5555554 7999999999765 1 2346678999999999999887643 1
Q ss_pred ---C-----ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHH
Q psy7542 196 ---H-----LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVV 267 (762)
Q Consensus 196 ---~-----lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv 267 (762)
+ ..+||++||..+...... +..++.+ ...|+.||+..|.++
T Consensus 135 ~~~~~~~~~~~~iv~isS~~~~~~~~~--~~~~~~~-----------------------------~~~Y~~sK~a~~~~~ 183 (250)
T 1yo6_A 135 ESGDQLSVSRAAVITISSGLGSITDNT--SGSAQFP-----------------------------VLAYRMSKAAINMFG 183 (250)
T ss_dssp SCSSCCCTTTCEEEEECCGGGCSTTCC--STTSSSC-----------------------------BHHHHHHHHHHHHHH
T ss_pred cCCCcccCCCcEEEEeccCccccCCcc--cccccCC-----------------------------ccHHHHHHHHHHHHH
Confidence 2 579999999865432210 0001011 157999999999999
Q ss_pred HHHHHc----CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhh
Q psy7542 268 TEYMEA----GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTW 343 (762)
Q Consensus 268 ~~~~~~----glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~ 343 (762)
+.++.. |++++++|||.|.++... . ..+++.+|+|++++.++.
T Consensus 184 ~~la~e~~~~gi~v~~v~Pg~v~t~~~~-----------~----------------------~~~~~~~~~a~~~~~~~~ 230 (250)
T 1yo6_A 184 RTLAVDLKDDNVLVVNFCPGWVQTNLGG-----------K----------------------NAALTVEQSTAELISSFN 230 (250)
T ss_dssp HHHHHHTGGGTCEEEEEECCCC----------------------------------------------HHHHHHHHHHHT
T ss_pred HHHHHHhccCCeEEEEEcCCceecCCCC-----------C----------------------CCCCCHHHHHHHHHHHHh
Confidence 887653 899999999987554210 0 135789999999999987
Q ss_pred cccCCCCCCceEEEec
Q psy7542 344 NFLSNPGNTMRVINLT 359 (762)
Q Consensus 344 ~~~~~~~~~~~iyNi~ 359 (762)
..... ..+..+.+.
T Consensus 231 ~~~~~--~~G~~~~~~ 244 (250)
T 1yo6_A 231 KLDNS--HNGRFFMRN 244 (250)
T ss_dssp TCCGG--GTTCEEETT
T ss_pred ccccc--CCCeEEEEC
Confidence 65421 124555544
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-17 Score=176.97 Aligned_cols=243 Identities=11% Similarity=0.066 Sum_probs=163.9
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC-------CCcchHHHHHHHhcChhHHHHHhhhhcccccCC
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK-------KNKNSRERLEEIFQSPLYEALKKEQSESAIFEK 130 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~-------~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~k 130 (762)
.++||+||||||+|+||++++++|++. +.+|+++.|.. ......+.+.+.+ .....+
T Consensus 24 ~l~gk~vlVTGas~GIG~aia~~la~~--G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 87 (322)
T 3qlj_A 24 VVDGRVVIVTGAGGGIGRAHALAFAAE--GARVVVNDIGVGLDGSPASGGSAAQSVVDEI--------------TAAGGE 87 (322)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEECCCBCTTSSBTCTTSHHHHHHHHH--------------HHTTCE
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCcccccccccccHHHHHHHHHHH--------------HhcCCc
Confidence 368999999999999999999999998 77889988861 1111222221111 112357
Q ss_pred eEEEEeecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-C
Q psy7542 131 VIPINGDVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-I 195 (762)
Q Consensus 131 V~~V~GDl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~ 195 (762)
+.++.+|+++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+..+++++... .
T Consensus 88 ~~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~ 161 (322)
T 3qlj_A 88 AVADGSNVADWD------QAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWR 161 (322)
T ss_dssp EEEECCCTTSHH------HHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 889999999865 5555544 78999999997642 2456778999999999999988543 0
Q ss_pred C--------ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHH
Q psy7542 196 H--------LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVV 267 (762)
Q Consensus 196 ~--------lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv 267 (762)
. -.++|++||..+..... ....|+.||+..+.++
T Consensus 162 ~~~~~~~~~~g~IV~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~l~ 203 (322)
T 3qlj_A 162 GLSKAGKAVDGRIINTSSGAGLQGSV--------------------------------------GQGNYSAAKAGIATLT 203 (322)
T ss_dssp HHHHTTCCCCEEEEEECCHHHHHCBT--------------------------------------TCHHHHHHHHHHHHHH
T ss_pred HccccCCCCCcEEEEEcCHHHccCCC--------------------------------------CCccHHHHHHHHHHHH
Confidence 0 14899999975432110 0157999999999998
Q ss_pred HHHHHc----CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhh
Q psy7542 268 TEYMEA----GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTW 343 (762)
Q Consensus 268 ~~~~~~----glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~ 343 (762)
+..+.. |+.+..++|| +..+.... .... .. ........++.++|+|++++.++.
T Consensus 204 ~~la~e~~~~gI~vn~v~PG-~~t~~~~~-------~~~~--~~------------~~~~~~~~~~~pedva~~v~~L~s 261 (322)
T 3qlj_A 204 LVGAAEMGRYGVTVNAIAPS-ARTRMTET-------VFAE--MM------------ATQDQDFDAMAPENVSPLVVWLGS 261 (322)
T ss_dssp HHHHHHHGGGTEEEEEEEEC-TTSCCSCC-------SCCC----------------------CCTTCGGGTHHHHHHHTS
T ss_pred HHHHHHhcccCcEEEEecCC-CCCccchh-------hhhh--hh------------hccccccCCCCHHHHHHHHHHHhC
Confidence 877652 8999999999 54332211 0000 00 011222356788999999999886
Q ss_pred cccCCCCCCceEEEecCCCCC---------------cccHHHHHHHHHHhhccCCC
Q psy7542 344 NFLSNPGNTMRVINLTANKDF---------------QITWYDIIENGKDIARNKVP 384 (762)
Q Consensus 344 ~~~~~~~~~~~iyNi~s~~~~---------------piT~~el~~~i~~~~G~~~P 384 (762)
..... ..++++++.++... ..+..|+++.+.+.+|.+.|
T Consensus 262 ~~~~~--itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~ 315 (322)
T 3qlj_A 262 AEARD--VTGKVFEVEGGKIRVAEGWAHGPQIDKGARWDPAELGPVVADLLGKARP 315 (322)
T ss_dssp GGGGG--CCSCEEEEETTEEEEEECCEEEEEEECSSCCCGGGHHHHHHHHHHHSCC
T ss_pred ccccC--CCCCEEEECCCccccCCCcccccccCccCCCCHHHHHHHHHHHhhccCC
Confidence 54321 14788988877211 23668999999998875544
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=168.16 Aligned_cols=221 Identities=15% Similarity=0.100 Sum_probs=153.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|.... ..+.+.+.+ .....++.++.+|+
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~--G~~V~~~~r~~~~--~~~~~~~~~--------------~~~~~~~~~~~~D~ 88 (271)
T 4iin_A 27 FTGKNVLITGASKGIGAEIAKTLASM--GLKVWINYRSNAE--VADALKNEL--------------EEKGYKAAVIKFDA 88 (271)
T ss_dssp CSCCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCHH--HHHHHHHHH--------------HHTTCCEEEEECCT
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCCHH--HHHHHHHHH--------------HhcCCceEEEECCC
Confidence 57899999999999999999999998 7789999985421 122222211 11236889999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ ++.++++ ++|+|||+||..... +.++..+++|+.|+.++++.+... .+..++|
T Consensus 89 ~~~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv 162 (271)
T 4iin_A 89 ASES------DFIEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVV 162 (271)
T ss_dssp TCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEE
Confidence 9865 5555543 789999999976432 456778999999999988887542 2457899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+..... ....|+.||+..+.+++..+.. ++++
T Consensus 163 ~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v 204 (271)
T 4iin_A 163 NVASIIGERGNM--------------------------------------GQTNYSASKGGMIAMSKSFAYEGALRNIRF 204 (271)
T ss_dssp EECCHHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEE
T ss_pred EEechhhcCCCC--------------------------------------CchHhHHHHHHHHHHHHHHHHHHHHhCcEE
Confidence 999975432110 0157999999999998877653 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
.+++||.|..+.....+. .. ............+..++|+|++++.++...... ..+++++
T Consensus 205 ~~v~PG~v~T~~~~~~~~---------~~---------~~~~~~~~~~~~~~~p~dvA~~i~~l~s~~~~~--itG~~i~ 264 (271)
T 4iin_A 205 NSVTPGFIETDMNANLKD---------EL---------KADYVKNIPLNRLGSAKEVAEAVAFLLSDHSSY--ITGETLK 264 (271)
T ss_dssp EEEEECSBCCC------------------------------CGGGCTTCSCBCHHHHHHHHHHHHSGGGTT--CCSCEEE
T ss_pred EEEEeCcccCCchhhhcH---------HH---------HHHHHhcCCcCCCcCHHHHHHHHHHHhCCCcCC--CcCCEEE
Confidence 999999886653221110 00 011112223346789999999999988765431 2578999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 265 vdGG 268 (271)
T 4iin_A 265 VNGG 268 (271)
T ss_dssp ESTT
T ss_pred eCCC
Confidence 9876
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-17 Score=169.64 Aligned_cols=231 Identities=13% Similarity=0.072 Sum_probs=159.0
Q ss_pred hccCCCEEEEECCC--ChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEE
Q psy7542 57 ATLEHKNIFITGAS--GFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPI 134 (762)
Q Consensus 57 ~~~~gk~VLVTGAT--GFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V 134 (762)
..+++|+||||||+ |+||++++++|++. +.+|+++.|..+ ..+.++++.+ ...++.++
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~--G~~V~~~~r~~~---~~~~~~~~~~---------------~~~~~~~~ 69 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKRE--GAELAFTYVGDR---FKDRITEFAA---------------EFGSELVF 69 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHT--TCEEEEEESSGG---GHHHHHHHHH---------------HTTCCCEE
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHc--CCCEEEEecchh---hHHHHHHHHH---------------HcCCcEEE
Confidence 45689999999999 99999999999998 778999999733 2344443321 12358899
Q ss_pred EeecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc------------cccHHHHHHHhHHHHHHHHHHHHHc-
Q psy7542 135 NGDVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF------------DDYMQTYVFLNTRGTRDMLNLSKQM- 194 (762)
Q Consensus 135 ~GDl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f------------~~~l~~~~~~NV~GT~~LLelA~~~- 194 (762)
.+|+++++ +++.+++ .+|++||+||.... .+.+...+++|+.|+.++++++...
T Consensus 70 ~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~ 143 (271)
T 3ek2_A 70 PCDVADDA------QIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPML 143 (271)
T ss_dssp ECCTTCHH------HHHHHHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGE
T ss_pred ECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 99999865 5555544 68999999997532 2346678999999999999998753
Q ss_pred CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-
Q psy7542 195 IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA- 273 (762)
Q Consensus 195 ~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~- 273 (762)
..-.++|++||..+..... ....|+.||+..+.+++..+..
T Consensus 144 ~~~g~iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~la~e~ 185 (271)
T 3ek2_A 144 SDDASLLTLSYLGAERAIP--------------------------------------NYNTMGLAKAALEASVRYLAVSL 185 (271)
T ss_dssp EEEEEEEEEECGGGTSBCT--------------------------------------TTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEEeccccccCCC--------------------------------------CccchhHHHHHHHHHHHHHHHHH
Confidence 2234899999986543211 0158999999999998877652
Q ss_pred ---CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCC
Q psy7542 274 ---GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPG 350 (762)
Q Consensus 274 ---glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~ 350 (762)
|+.+++++||.|..+..... ............. .....+..++|+|++++.++..... .
T Consensus 186 ~~~gi~v~~v~PG~v~T~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~pedva~~i~~l~s~~~~--~ 247 (271)
T 3ek2_A 186 GAKGVRVNAISAGPIKTLAASGI-------KSFGKILDFVESN---------SPLKRNVTIEQVGNAGAFLLSDLAS--G 247 (271)
T ss_dssp HTTTCEEEEEEECCC-----CCC-------HHHHHHHHHHHHH---------STTSSCCCHHHHHHHHHHHHSGGGT--T
T ss_pred HhcCcEEEEEecCcccchhhhcc-------cchHHHHHHHHhc---------CCcCCCCCHHHHHHHHHHHcCcccC--C
Confidence 89999999998876543211 1111122222111 1123467899999999998875433 1
Q ss_pred CCceEEEecCCCCCcccHHHH
Q psy7542 351 NTMRVINLTANKDFQITWYDI 371 (762)
Q Consensus 351 ~~~~iyNi~s~~~~piT~~el 371 (762)
..++++++.+| ..++..++
T Consensus 248 ~tG~~i~vdgG--~~~~~~~~ 266 (271)
T 3ek2_A 248 VTAEVMHVDSG--FNAVVGGM 266 (271)
T ss_dssp CCSEEEEESTT--GGGBCCCC
T ss_pred eeeeEEEECCC--eeeehhhh
Confidence 25899999988 55555444
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=8.5e-17 Score=167.26 Aligned_cols=221 Identities=12% Similarity=0.058 Sum_probs=150.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|.. ++++++.+ ....++.++.+|+
T Consensus 4 l~~k~vlVTGas~giG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~D~ 61 (253)
T 1hxh_A 4 LQGKVALVTGGASGVGLEVVKLLLGE--GAKVAFSDINE------AAGQQLAA--------------ELGERSMFVRHDV 61 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEECSCH------HHHHHHHH--------------HHCTTEEEECCCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH--------------HcCCceEEEEccC
Confidence 57899999999999999999999998 77889998853 23332211 1124788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++.+++ .+|+|||+|+.... .+.++..+++|+.|+..+.+.+... .+ .++|
T Consensus 62 ~~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv 134 (253)
T 1hxh_A 62 SSEA------DWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSII 134 (253)
T ss_dssp TCHH------HHHHHHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEE
Confidence 9865 5555443 57999999997542 2456778999999988777665431 24 7999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc------CC
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA------GM 275 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~------gl 275 (762)
++||..+..... . ...|+.||+..|.+++..+.. |+
T Consensus 135 ~isS~~~~~~~~----------~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~~~gi 176 (253)
T 1hxh_A 135 NMASVSSWLPIE----------Q----------------------------YAGYSASKAAVSALTRAAALSCRKQGYAI 176 (253)
T ss_dssp EECCGGGTSCCT----------T----------------------------BHHHHHHHHHHHHHHHHHHHHHHHHTCCE
T ss_pred EEcchhhcCCCC----------C----------------------------CccHHHHHHHHHHHHHHHHHHhhhcCCCe
Confidence 999986643210 0 157999999999988877653 79
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
+++++|||.|.++..... . +............ .......+..++|+|++++.++...... ..+++
T Consensus 177 ~v~~v~Pg~v~t~~~~~~---~-----~~~~~~~~~~~~~-----~~~p~~~~~~~~dvA~~~~~l~s~~~~~--~tG~~ 241 (253)
T 1hxh_A 177 RVNSIHPDGIYTPMMQAS---L-----PKGVSKEMVLHDP-----KLNRAGRAYMPERIAQLVLFLASDESSV--MSGSE 241 (253)
T ss_dssp EEEEEEESEECCHHHHHH---S-----CTTCCHHHHBCBT-----TTBTTCCEECHHHHHHHHHHHHSGGGTT--CCSCE
T ss_pred EEEEEEeCCccCchhhhc---c-----chhhhHHHHhhhh-----ccCccCCCCCHHHHHHHHHHHcCccccC--CCCcE
Confidence 999999999987632100 0 0000001000000 0011234788999999999988765321 14789
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+++.++
T Consensus 242 ~~vdgG 247 (253)
T 1hxh_A 242 LHADNS 247 (253)
T ss_dssp EEESSS
T ss_pred EEECCC
Confidence 998876
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=166.36 Aligned_cols=226 Identities=12% Similarity=0.103 Sum_probs=151.3
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|+||||||+|+||++++++|++. +.+|+++.|..... .++++.+ .+ .....++.++.+|+++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~----~~~~~~~-----~~------~~~~~~~~~~~~Dv~~ 64 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAAD--GFDIAVADLPQQEE----QAAETIK-----LI------EAADQKAVFVGLDVTD 64 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHH--TCEEEEEECGGGHH----HHHHHHH-----HH------HTTTCCEEEEECCTTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcchH----HHHHHHH-----HH------HhcCCcEEEEEccCCC
Confidence 689999999999999999999999 77889998864320 1221110 01 1113578899999998
Q ss_pred CCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCc-cEEEE
Q psy7542 141 PDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHL-QLFVY 202 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~l-k~fV~ 202 (762)
++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+. .++|+
T Consensus 65 ~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~ 138 (258)
T 3a28_C 65 KA------NFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIIN 138 (258)
T ss_dssp HH------HHHHHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred HH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 65 5555544 79999999997543 1356778999999999999988652 244 79999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~ 278 (762)
+||..+.... |. ...|+.||+..|.+.+..+. .|++++
T Consensus 139 isS~~~~~~~----------~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn 180 (258)
T 3a28_C 139 AASIAAIQGF----------PI----------------------------LSAYSTTKFAVRGLTQAAAQELAPKGHTVN 180 (258)
T ss_dssp ECCGGGTSCC----------TT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred ECcchhccCC----------CC----------------------------chhHHHHHHHHHHHHHHHHHHHHhhCeEEE
Confidence 9998654321 00 15799999999999887765 289999
Q ss_pred EEeeeeeccCCCCCCCCCCCCC---CCc--hHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNI---NGP--TGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~---~gp--~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
+++||.|.++.... +.... .++ .......... .....+...+|+|++++.++..... ...+
T Consensus 181 ~v~PG~v~t~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---------~p~~r~~~p~dvA~~v~~l~s~~~~--~~tG 246 (258)
T 3a28_C 181 AYAPGIVGTGMWEQ---IDAELSKINGKPIGENFKEYSSS---------IALGRPSVPEDVAGLVSFLASENSN--YVTG 246 (258)
T ss_dssp EEEECCBCSHHHHH---HHHHHHHHHCCCTTHHHHHHHTT---------CTTSSCBCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred EEECCccCChhhhh---hhhhhccccCCchHHHHHHHHhc---------CCCCCccCHHHHHHHHHHHhCcccC--CCCC
Confidence 99999885542100 00000 000 0111111111 1123478999999999998865432 1147
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++++.++
T Consensus 247 ~~i~vdGG 254 (258)
T 3a28_C 247 QVMLVDGG 254 (258)
T ss_dssp CEEEESSS
T ss_pred CEEEECCC
Confidence 89999877
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.72 E-value=9.3e-17 Score=168.36 Aligned_cols=216 Identities=15% Similarity=0.108 Sum_probs=150.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|.... ..++.++.+|+
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~----------------------------~~~~~~~~~Dl 55 (264)
T 2dtx_A 6 LRDKVVIVTGASMGIGRAIAERFVDE--GSKVIDLSIHDPG----------------------------EAKYDHIECDV 55 (264)
T ss_dssp GTTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESSCCC----------------------------SCSSEEEECCT
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEecCccc----------------------------CCceEEEEecC
Confidence 57899999999999999999999998 6789999996532 14678899999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 56 ~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv 129 (264)
T 2dtx_A 56 TNPD------QVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIV 129 (264)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9865 5555544 69999999997542 2356778999999999999988652 2457999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-C--CCEE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-G--MPCM 278 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-g--lpv~ 278 (762)
++||..+..... + ...|+.||+..|.+++..+.. + ++++
T Consensus 130 ~isS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~i~vn 171 (264)
T 2dtx_A 130 NISSVQASIITK---------N-----------------------------ASAYVTSKHAVIGLTKSIALDYAPLLRCN 171 (264)
T ss_dssp EECCGGGTSCCT---------T-----------------------------BHHHHHHHHHHHHHHHHHHHHHTTTSEEE
T ss_pred EECCchhccCCC---------C-----------------------------chhHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 999986543210 0 157999999999999888764 2 8999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCch----HHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPT----GLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~----~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
+++||.|.++........ ...... ........ ......++.++|+|++++.++..... ...++
T Consensus 172 ~v~PG~v~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------~~p~~~~~~p~dvA~~v~~l~s~~~~--~~tG~ 238 (264)
T 2dtx_A 172 AVCPATIDTPLVRKAAEL--EVGSDPMRIEKKISEWGH---------EHPMQRIGKPQEVASAVAFLASREAS--FITGT 238 (264)
T ss_dssp EEEECSBCSHHHHHHHHH--HHCSCHHHHHHHHHHHHH---------HSTTSSCBCHHHHHHHHHHHHSGGGT--TCCSC
T ss_pred EEEeCCCcCcchhhhhhc--ccccCchhhHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCchhc--CCCCc
Confidence 999998754321000000 000000 01111111 01123588999999999998875432 11478
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
++++.++
T Consensus 239 ~i~vdGG 245 (264)
T 2dtx_A 239 CLYVDGG 245 (264)
T ss_dssp EEEESTT
T ss_pred EEEECCC
Confidence 9998876
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-16 Score=168.12 Aligned_cols=223 Identities=15% Similarity=0.120 Sum_probs=147.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.++|+||||||+|+||++++++|++. +.+|+++.+... ++++++.+ .+ .....++.++.+|+
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~--G~~V~~~~~~~~-----~~~~~~~~-----~~------~~~~~~~~~~~~Dl 85 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQ--GWRVGVNYAANR-----EAADAVVA-----AI------TESGGEAVAIPGDV 85 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCH-----HHHHHHHH-----HH------HHTTCEEEEEECCT
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCCh-----hHHHHHHH-----HH------HhcCCcEEEEEcCC
Confidence 46789999999999999999999999 677777644321 22222111 01 11235789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc------CCc
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM------IHL 197 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~------~~l 197 (762)
++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+..+++++... ++.
T Consensus 86 ~~~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~ 159 (272)
T 4e3z_A 86 GNAA------DIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQG 159 (272)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCC
T ss_pred CCHH------HHHHHHHHHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCC
Confidence 9865 5555543 68999999997653 1346678999999999999888653 134
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---- 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---- 273 (762)
.+||++||..+..... . ....|+.||+..|.+++.++..
T Consensus 160 g~iv~isS~~~~~~~~----------~---------------------------~~~~Y~asKaa~~~~~~~la~e~~~~ 202 (272)
T 4e3z_A 160 GAIVNVSSMAAILGSA----------T---------------------------QYVDYAASKAAIDTFTIGLAREVAAE 202 (272)
T ss_dssp EEEEEECCTHHHHCCT----------T---------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CEEEEEcchHhccCCC----------C---------------------------CcchhHHHHHHHHHHHHHHHHHHHHc
Confidence 6899999985432110 0 0146999999999988777653
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+++++++||.|.++.... ......... + ........+..++|+|++++.++...... ..+
T Consensus 203 gi~v~~v~PG~v~t~~~~~--------~~~~~~~~~--------~-~~~~~~~~~~~~edvA~~i~~l~s~~~~~--~tG 263 (272)
T 4e3z_A 203 GIRVNAVRPGIIETDLHAS--------GGLPDRARE--------M-APSVPMQRAGMPEEVADAILYLLSPSASY--VTG 263 (272)
T ss_dssp TEEEEEEEECSBC-----------------------------------CCTTSSCBCHHHHHHHHHHHHSGGGTT--CCS
T ss_pred CcEEEEEecCCCcCCcccc--------cCChHHHHH--------H-hhcCCcCCCcCHHHHHHHHHHHhCCcccc--ccC
Confidence 8999999999997764321 000000000 0 11122344677999999999988654431 257
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++++.+|
T Consensus 264 ~~i~vdgG 271 (272)
T 4e3z_A 264 SILNVSGG 271 (272)
T ss_dssp CEEEESTT
T ss_pred CEEeecCC
Confidence 89999876
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-16 Score=164.27 Aligned_cols=223 Identities=14% Similarity=0.089 Sum_probs=153.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|... +++++.+ .+ .....++.++.+|+
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~------~~~~~~~-----~~------~~~~~~~~~~~~Dv 64 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKE--GARVVITGRTKE------KLEEAKL-----EI------EQFPGQILTVQMDV 64 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHH------HHHHHHH-----HH------CCSTTCEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH-----HH------HhcCCcEEEEEccC
Confidence 57899999999999999999999998 778899998642 2222111 00 12235789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH----cCCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ----MIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~----~~~lk~f 200 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++.. .++..++
T Consensus 65 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~i 138 (257)
T 3imf_A 65 RNTD------DIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNI 138 (257)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEE
Confidence 9875 5555544 68999999996432 245677899999999999998843 2245789
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----c-CC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----A-GM 275 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~-gl 275 (762)
|++||..+..... . ...|+.||+..+.+.+..+. . |+
T Consensus 139 v~isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~~gI 180 (257)
T 3imf_A 139 INMVATYAWDAGP----------G----------------------------VIHSAAAKAGVLAMTKTLAVEWGRKYGI 180 (257)
T ss_dssp EEECCGGGGSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEECchhhccCCC----------C----------------------------cHHHHHHHHHHHHHHHHHHHHhccccCe
Confidence 9999986543211 0 15799999998888876552 2 89
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
++++++||.|.++..... .|... .+....... .....+..++|+|++++.++...... ..+++
T Consensus 181 rvn~v~PG~v~t~~~~~~-~~~~~-----~~~~~~~~~---------~p~~r~~~pedvA~~v~~L~s~~~~~--itG~~ 243 (257)
T 3imf_A 181 RVNAIAPGPIERTGGADK-LWISE-----EMAKRTIQS---------VPLGRLGTPEEIAGLAYYLCSDEAAY--INGTC 243 (257)
T ss_dssp EEEEEEECCBSSCCCC-------------CCSHHHHTT---------STTCSCBCHHHHHHHHHHHHSGGGTT--CCSCE
T ss_pred EEEEEEECCCcCCcchhh-cccCH-----HHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCchhcC--ccCCE
Confidence 999999999977642210 01110 011111111 11235788999999999988765431 24789
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+++.++
T Consensus 244 i~vdGG 249 (257)
T 3imf_A 244 MTMDGG 249 (257)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 999887
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-16 Score=166.42 Aligned_cols=231 Identities=12% Similarity=0.090 Sum_probs=150.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.... .++++.+ .+... ...++.++.+|+
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~-----~~~~~~~-----~~~~~-----~~~~~~~~~~D~ 64 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQ--GADIVLNGFGDAA-----EIEKVRA-----GLAAQ-----HGVKVLYDGADL 64 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEECCSCHH-----HHHHHHH-----HHHHH-----HTSCEEEECCCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHc--CCEEEEEeCCcch-----HHHHHHH-----HHHhc-----cCCcEEEEECCC
Confidence 47899999999999999999999998 7788999886421 0222111 11111 124788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 65 ~~~~------~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv 138 (260)
T 1x1t_A 65 SKGE------AVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRII 138 (260)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9865 5555544 69999999997542 2456778999999999999888532 2457999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+..... + ...|+.||+..|.+++..+.. |+++
T Consensus 139 ~isS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 180 (260)
T 1x1t_A 139 NIASAHGLVASA---------N-----------------------------KSAYVAAKHGVVGFTKVTALETAGQGITA 180 (260)
T ss_dssp EECCGGGTSCCT---------T-----------------------------CHHHHHHHHHHHHHHHHHHHHHTTTTEEE
T ss_pred EECcHHhCcCCC---------C-----------------------------CchHHHHHHHHHHHHHHHHHHhccCCEEE
Confidence 999986543210 0 157999999999999877652 8999
Q ss_pred EEEeeeeeccCCCCCC-CCCCCCCCC--chHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 278 MILRPSIIIPIWKDPL-PGWTDNING--PTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~-pGWidn~~g--p~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
++++||.|.++..... +.+... .+ ....... +.........+..++|+|++++.++..... ...++
T Consensus 181 ~~v~Pg~v~t~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~p~~~~~~p~dva~~~~~l~s~~~~--~~tG~ 249 (260)
T 1x1t_A 181 NAICPGWVRTPLVEKQISALAEK-NGVDQETAARE--------LLSEKQPSLQFVTPEQLGGTAVFLASDAAA--QITGT 249 (260)
T ss_dssp EEEEECCBCC---------------------------------CHHHHCTTCCCBCHHHHHHHHHHHHSGGGT--TCCSC
T ss_pred EEEeecCccCchHHHhhhhhccc-cCCchHHHHHH--------HhhccCCCCCCcCHHHHHHHHHHHhChhhc--CCCCC
Confidence 9999999977643211 000000 00 0000000 000001123578999999999998865432 12478
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
++++.++
T Consensus 250 ~~~vdgG 256 (260)
T 1x1t_A 250 TVSVDGG 256 (260)
T ss_dssp EEEESTT
T ss_pred EEEECCC
Confidence 9999876
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-17 Score=173.68 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=154.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|++..|..... ..+.+.+.+ .....++.++.+|+
T Consensus 47 l~~k~vlVTGas~GIG~aia~~la~~--G~~V~~~~~~~~~~-~~~~~~~~~--------------~~~~~~~~~~~~Dv 109 (294)
T 3r3s_A 47 LKDRKALVTGGDSGIGRAAAIAYARE--GADVAINYLPAEEE-DAQQVKALI--------------EECGRKAVLLPGDL 109 (294)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEECCGGGHH-HHHHHHHHH--------------HHTTCCEEECCCCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcchh-HHHHHHHHH--------------HHcCCcEEEEEecC
Confidence 58999999999999999999999998 77888888753211 112222211 11236789999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~ 202 (762)
++++ +++.++ ..+|++||+||.... .+.++..+++|+.|+.++++++... .+-.++|+
T Consensus 110 ~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~ 183 (294)
T 3r3s_A 110 SDES------FARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIIT 183 (294)
T ss_dssp TSHH------HHHHHHHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEE
Confidence 9865 455444 378999999997431 2446778999999999999999764 22248999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~ 278 (762)
+||..+..... . ...|+.||+..|.+.+..+.. |++++
T Consensus 184 isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gI~vn 225 (294)
T 3r3s_A 184 TSSIQAYQPSP----------H----------------------------LLDYAATKAAILNYSRGLAKQVAEKGIRVN 225 (294)
T ss_dssp ECCGGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred ECChhhccCCC----------C----------------------------chHHHHHHHHHHHHHHHHHHHHhhcCeEEE
Confidence 99986643211 0 157999999999998877653 89999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
+++||.|.++.... +. . ......... .......+...+|+|++++.++...... ..++++++
T Consensus 226 ~v~PG~v~t~~~~~--~~----~-~~~~~~~~~---------~~~p~~r~~~p~dvA~~v~~L~s~~~~~--itG~~i~v 287 (294)
T 3r3s_A 226 IVAPGPIWTALQIS--GG----Q-TQDKIPQFG---------QQTPMKRAGQPAELAPVYVYLASQESSY--VTAEVHGV 287 (294)
T ss_dssp EEEECSBCSHHHHT--TT----S-CGGGSTTTT---------TTSTTSSCBCGGGGHHHHHHHHSGGGTT--CCSCEEEE
T ss_pred EEecCcCccccccc--cC----C-CHHHHHHHH---------hcCCCCCCcCHHHHHHHHHHHhCccccC--CCCCEEEE
Confidence 99999997753110 00 0 000000011 1112234677899999999888654431 25789999
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.+|
T Consensus 288 dGG 290 (294)
T 3r3s_A 288 CGG 290 (294)
T ss_dssp STT
T ss_pred CCC
Confidence 887
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-16 Score=165.28 Aligned_cols=211 Identities=16% Similarity=0.108 Sum_probs=146.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.... ..+.+.+ .++.++.+|+
T Consensus 25 l~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~--~~~~~~~--------------------~~~~~~~~Dv 80 (260)
T 3gem_A 25 LSSAPILITGASQRVGLHCALRLLEH--GHRVIISYRTEHA--SVTELRQ--------------------AGAVALYGDF 80 (260)
T ss_dssp --CCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESSCCH--HHHHHHH--------------------HTCEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCChHH--HHHHHHh--------------------cCCeEEECCC
Confidence 57899999999999999999999999 6788999997532 1111111 2478899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~ 202 (762)
++++ ++++++ ..+|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 81 ~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~ 154 (260)
T 3gem_A 81 SCET------GIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVH 154 (260)
T ss_dssp TSHH------HHHHHHHHHHHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 9865 555544 368999999997532 1345678999999999999988642 24578999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---CCCEEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---GMPCMI 279 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---glpv~I 279 (762)
+||..+..... . ...|+.||+..+.+++..+.. ++++.+
T Consensus 155 isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~Irvn~ 196 (260)
T 3gem_A 155 ISDDVTRKGSS----------K----------------------------HIAYCATKAGLESLTLSFAARFAPLVKVNG 196 (260)
T ss_dssp ECCGGGGTCCS----------S----------------------------CHHHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred ECChhhcCCCC----------C----------------------------cHhHHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 99986543211 0 157999999999998887764 699999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
++||.|.++.... ......... .....-+..++|+|++++.++..... .++++++.
T Consensus 197 v~PG~v~t~~~~~-----------~~~~~~~~~---------~~p~~r~~~~edva~~v~~L~~~~~i----tG~~i~vd 252 (260)
T 3gem_A 197 IAPALLMFQPKDD-----------AAYRANALA---------KSALGIEPGAEVIYQSLRYLLDSTYV----TGTTLTVN 252 (260)
T ss_dssp EEECTTCC-----------------------------------CCSCCCCCTHHHHHHHHHHHHCSSC----CSCEEEES
T ss_pred EeecccccCCCCC-----------HHHHHHHHh---------cCCCCCCCCHHHHHHHHHHHhhCCCC----CCCEEEEC
Confidence 9999886542110 001111111 11122355689999999998854443 58899998
Q ss_pred CC
Q psy7542 360 AN 361 (762)
Q Consensus 360 s~ 361 (762)
+|
T Consensus 253 GG 254 (260)
T 3gem_A 253 GG 254 (260)
T ss_dssp TT
T ss_pred CC
Confidence 88
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-16 Score=163.93 Aligned_cols=223 Identities=10% Similarity=0.042 Sum_probs=156.8
Q ss_pred cCCCEEEEECCCCh--hHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGASGF--VGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGATGF--LG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
++||+|+||||+|+ ||++++++|++. +.+|+++.|..+ ..+.++++.+ .....++.++.+
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~--G~~V~~~~r~~~---~~~~~~~~~~-------------~~~~~~~~~~~~ 66 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEA--GARLIFTYAGER---LEKSVHELAG-------------TLDRNDSIILPC 66 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHT--TCEEEEEESSGG---GHHHHHHHHH-------------TSSSCCCEEEEC
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEecCchH---HHHHHHHHHH-------------hcCCCCceEEeC
Confidence 47899999999999 999999999998 778899988643 2333433321 111237999999
Q ss_pred ecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-----------cccHHHHHHHhHHHHHHHHHHHHHc-CCc
Q psy7542 137 DVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-----------DDYMQTYVFLNTRGTRDMLNLSKQM-IHL 197 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-----------~~~l~~~~~~NV~GT~~LLelA~~~-~~l 197 (762)
|+++++ +++++++ .+|++||+|+.... .+.+...+++|+.|+.++++++... .+-
T Consensus 67 D~~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ 140 (266)
T 3oig_A 67 DVTNDA------EIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEG 140 (266)
T ss_dssp CCSSSH------HHHHHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTC
T ss_pred CCCCHH------HHHHHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCC
Confidence 999976 5555443 68999999997541 1345678999999999999998764 223
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---- 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---- 273 (762)
.++|++||..+.... |. ...|+.||+..+.+++..+..
T Consensus 141 g~iv~isS~~~~~~~----------~~----------------------------~~~Y~asKaa~~~~~~~la~e~~~~ 182 (266)
T 3oig_A 141 GSIVTLTYLGGELVM----------PN----------------------------YNVMGVAKASLDASVKYLAADLGKE 182 (266)
T ss_dssp EEEEEEECGGGTSCC----------TT----------------------------THHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred ceEEEEecccccccC----------CC----------------------------cchhHHHHHHHHHHHHHHHHHHhhc
Confidence 589999998654321 10 157999999999988877652
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+++++++||.|..+..... .............. ....+...+|+|++++.++...... ..+
T Consensus 183 gi~v~~v~PG~v~T~~~~~~-------~~~~~~~~~~~~~~---------~~~~~~~p~dva~~v~~l~s~~~~~--~tG 244 (266)
T 3oig_A 183 NIRVNSISAGPIRTLSAKGI-------SDFNSILKDIEERA---------PLRRTTTPEEVGDTAAFLFSDMSRG--ITG 244 (266)
T ss_dssp TEEEEEEEECCCCSGGGTTC-------TTHHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHHSGGGTT--CCS
T ss_pred CcEEEEEecCcccccccccc-------cchHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHcCCchhc--CcC
Confidence 89999999999877543211 11112222222111 1234678999999999988764431 257
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++++.+|
T Consensus 245 ~~i~vdGG 252 (266)
T 3oig_A 245 ENLHVDSG 252 (266)
T ss_dssp CEEEESTT
T ss_pred CEEEECCC
Confidence 89999887
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=8.9e-17 Score=169.52 Aligned_cols=245 Identities=11% Similarity=0.071 Sum_probs=159.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcc------hHHHHHHHhcChhHHHHHhhhhcccccCCeE
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKN------SRERLEEIFQSPLYEALKKEQSESAIFEKVI 132 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~------~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~ 132 (762)
++||+||||||+|+||++++++|++. +.+|+++.|...... ..+++++... .+ .....++.
T Consensus 8 l~gk~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~ 74 (287)
T 3pxx_A 8 VQDKVVLVTGGARGQGRSHAVKLAEE--GADIILFDICHDIETNEYPLATSRDLEEAGL-----EV------EKTGRKAY 74 (287)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCSCCTTSCSCCCCHHHHHHHHH-----HH------HHTTSCEE
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHC--CCeEEEEcccccccccccchhhhHHHHHHHH-----HH------HhcCCceE
Confidence 58999999999999999999999999 778899988733211 1233333211 01 12246899
Q ss_pred EEEeecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-----cccHHHHHHHhHHHHHHHHHHHHHc-CCccE
Q psy7542 133 PINGDVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-----DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQL 199 (762)
Q Consensus 133 ~V~GDl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-----~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~ 199 (762)
++.+|+++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+-.+
T Consensus 75 ~~~~D~~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~ 148 (287)
T 3pxx_A 75 TAEVDVRDRA------AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGAS 148 (287)
T ss_dssp EEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCE
T ss_pred EEEccCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcE
Confidence 9999999865 5555544 78999999997643 2457789999999999999999764 23358
Q ss_pred EEEEeCCcccCCCc--ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----
Q psy7542 200 FVYVSTAYCHPKEK--VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---- 273 (762)
Q Consensus 200 fV~vSSay~~~~~~--~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---- 273 (762)
+|++||..+..... +..|.. + .+ ....|+.||+..+.+.+..+..
T Consensus 149 iv~isS~~~~~~~~~~~~~~~~---~---------------------~~-----~~~~Y~asK~a~~~~~~~la~e~~~~ 199 (287)
T 3pxx_A 149 IITTGSVAGLIAAAQPPGAGGP---Q---------------------GP-----GGAGYSYAKQLVDSYTLQLAAQLAPQ 199 (287)
T ss_dssp EEEECCHHHHHHHHCCC--------C---------------------HH-----HHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred EEEeccchhccccccccccccc---C---------------------CC-----ccchHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999985432111 111100 0 00 0147999999999998877663
Q ss_pred CCCEEEEeeeeeccCCCCCCCC---CCCCCCCch--HHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCC
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPG---WTDNINGPT--GLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSN 348 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pG---Widn~~gp~--~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~ 348 (762)
|+++..++||.|.++.....+. +......+. ...... .........+..++|+|++++.++.....
T Consensus 200 gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~p~dva~~v~fL~s~~a~- 270 (287)
T 3pxx_A 200 SIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRADALLAF--------PAMQAMPTPYVEASDISNAVCFLASDESR- 270 (287)
T ss_dssp TCEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHG--------GGGCSSSCSCBCHHHHHHHHHHHHSGGGT-
T ss_pred CcEEEEEecCccccccccccchhhhhccccccchhHHHHhhh--------hhhcccCCCCCCHHHHHhhHheecchhhc-
Confidence 8999999999997764321000 000000000 000000 00111115688999999999998865433
Q ss_pred CCCCceEEEecCC
Q psy7542 349 PGNTMRVINLTAN 361 (762)
Q Consensus 349 ~~~~~~iyNi~s~ 361 (762)
-..++++++.+|
T Consensus 271 -~itG~~i~vdGG 282 (287)
T 3pxx_A 271 -YVTGLQFKVDAG 282 (287)
T ss_dssp -TCCSCEEEESTT
T ss_pred -CCCCceEeECch
Confidence 125789999887
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-16 Score=163.38 Aligned_cols=221 Identities=16% Similarity=0.194 Sum_probs=150.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|... ++++++.+ .++ ....++.++.+|+
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~--G~~V~~~~r~~~-----~~~~~~~~-----~~~------~~~~~~~~~~~D~ 63 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQ--GANVVVNYAGNE-----QKANEVVD-----EIK------KLGSDAIAVRADV 63 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCH-----HHHHHHHH-----HHH------HTTCCEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCCH-----HHHHHHHH-----HHH------hcCCcEEEEEcCC
Confidence 46899999999999999999999998 778899988421 22222211 111 1135788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++.+... .+..++|
T Consensus 64 ~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv 137 (246)
T 2uvd_A 64 ANAE------DVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIV 137 (246)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9865 5655554 79999999997542 2356778999999987777766431 2457999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+.... | ....|+.||+..+.+.+..+. .|+++
T Consensus 138 ~isS~~~~~~~----------~----------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v 179 (246)
T 2uvd_A 138 NIASVVGVTGN----------P----------------------------GQANYVAAKAGVIGLTKTSAKELASRNITV 179 (246)
T ss_dssp EECCTHHHHCC----------T----------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECCHHhcCCC----------C----------------------------CCchHHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 99998543211 0 015799999988888776654 38999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
++++||.|.++..... . ........... ....++.++|+|++++.++...... ..+++++
T Consensus 180 ~~v~Pg~v~t~~~~~~-------~--~~~~~~~~~~~---------p~~~~~~~~dvA~~~~~l~s~~~~~--~tG~~~~ 239 (246)
T 2uvd_A 180 NAIAPGFIATDMTDVL-------D--ENIKAEMLKLI---------PAAQFGEAQDIANAVTFFASDQSKY--ITGQTLN 239 (246)
T ss_dssp EEEEECSBGGGCSSCC-------C--TTHHHHHHHTC---------TTCSCBCHHHHHHHHHHHHSGGGTT--CCSCEEE
T ss_pred EEEEeccccCcchhhc-------C--HHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCchhcC--CCCCEEE
Confidence 9999999876643211 0 11111111111 1134789999999999988654321 1478899
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 240 vdgG 243 (246)
T 2uvd_A 240 VDGG 243 (246)
T ss_dssp ESTT
T ss_pred ECcC
Confidence 8876
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=7.7e-17 Score=168.77 Aligned_cols=231 Identities=14% Similarity=0.137 Sum_probs=155.7
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
..++||+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ .+ .....++.++.+
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~~------~~~~~~~~~~~~ 67 (264)
T 3ucx_A 7 GLLTDKVVVISGVGPALGTTLARRCAEQ--GADLVLAARTV------ERLEDVAK-----QV------TDTGRRALSVGT 67 (264)
T ss_dssp CTTTTCEEEEESCCTTHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HH------HHTTCCEEEEEC
T ss_pred CCcCCcEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeCCH------HHHHHHHH-----HH------HhcCCcEEEEEc
Confidence 3468999999999999999999999998 77889999853 22322211 11 112367899999
Q ss_pred ecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc--CCccE
Q psy7542 137 DVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQL 199 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~ 199 (762)
|+++++ +++++++ .+|++||+|+.... .+.++..+++|+.|+.++++++... ++-.+
T Consensus 68 Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~ 141 (264)
T 3ucx_A 68 DITDDA------QVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGA 141 (264)
T ss_dssp CTTCHH------HHHHHHHHHHHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCE
T ss_pred CCCCHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCE
Confidence 999876 5555543 68999999987521 1456778999999999999887542 11159
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----gl 275 (762)
+|++||..+..... . ...|+.||+..+.+.+..+.. |+
T Consensus 142 iv~isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~~~~~la~e~~~~gi 183 (264)
T 3ucx_A 142 VVNVNSMVVRHSQA----------K----------------------------YGAYKMAKSALLAMSQTLATELGEKGI 183 (264)
T ss_dssp EEEECCGGGGCCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEEECcchhccCCC----------c----------------------------cHHHHHHHHHHHHHHHHHHHHhCccCe
Confidence 99999986543211 0 147999999999988877652 89
Q ss_pred CEEEEeeeeeccCCCCCCCCCCC-C-CCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTD-N-INGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWid-n-~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
++.+++||.|.++.......... . ...+..+..... +......+..++|+|++++.++...... ..+
T Consensus 184 ~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~p~~r~~~p~dvA~~v~~L~s~~~~~--itG 252 (264)
T 3ucx_A 184 RVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAA---------AGSDLKRLPTEDEVASAILFMASDLASG--ITG 252 (264)
T ss_dssp EEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHH---------TTSSSSSCCBHHHHHHHHHHHHSGGGTT--CCS
T ss_pred EEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHh---------ccCCcccCCCHHHHHHHHHHHcCccccC--CCC
Confidence 99999999887653210000000 0 000011111111 1223346889999999999988654331 257
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++++.++
T Consensus 253 ~~i~vdGG 260 (264)
T 3ucx_A 253 QALDVNCG 260 (264)
T ss_dssp CEEEESTT
T ss_pred CEEEECCC
Confidence 89999887
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=166.37 Aligned_cols=221 Identities=14% Similarity=0.063 Sum_probs=153.8
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEE-eCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYIL-LRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~L-vR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++|+||||||+|+||++++++|++. +.+|+++ .|.. ++++++.+ .+ .....++.++.+|+
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~--G~~vv~~~~r~~------~~~~~~~~-----~~------~~~~~~~~~~~~Dv 63 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAEN--GYNIVINYARSK------KAALETAE-----EI------EKLGVKVLVVKANV 63 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSCH------HHHHHHHH-----HH------HTTTCCEEEEECCT
T ss_pred CCCEEEEecCCchHHHHHHHHHHHC--CCEEEEEcCCCH------HHHHHHHH-----HH------HhcCCcEEEEEcCC
Confidence 6899999999999999999999998 7777776 5643 22222111 01 11235799999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 64 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv 137 (258)
T 3oid_A 64 GQPA------KIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIV 137 (258)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9875 5555543 57999999986432 2346678999999999999988532 2456999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+..... ....|+.||+..+.+++..+.. |+++
T Consensus 138 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~v 179 (258)
T 3oid_A 138 SISSLGSIRYLE--------------------------------------NYTTVGVSKAALEALTRYLAVELSPKQIIV 179 (258)
T ss_dssp EEEEGGGTSBCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEE
T ss_pred EECchhhCCCCC--------------------------------------CcHHHHHHHHHHHHHHHHHHHHHhhcCcEE
Confidence 999986543211 0157999999999999887763 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
.+++||.|.++.... .............+ .....+..++|+|++++.++..... ...+++++
T Consensus 180 n~v~PG~v~T~~~~~-------~~~~~~~~~~~~~~---------~p~~r~~~~~dva~~v~~L~s~~~~--~itG~~i~ 241 (258)
T 3oid_A 180 NAVSGGAIDTDALKH-------FPNREDLLEDARQN---------TPAGRMVEIKDMVDTVEFLVSSKAD--MIRGQTII 241 (258)
T ss_dssp EEEEECCBCSGGGGG-------CTTHHHHHHHHHHH---------CTTSSCBCHHHHHHHHHHHTSSTTT--TCCSCEEE
T ss_pred EEEeeCCCcChhhhh-------cccCHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCcccC--CccCCEEE
Confidence 999999987654321 11111222222211 1224578899999999998876543 12588999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 242 vdGG 245 (258)
T 3oid_A 242 VDGG 245 (258)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9887
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-16 Score=164.77 Aligned_cols=213 Identities=14% Similarity=0.104 Sum_probs=149.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|... +..+ ....++.++.+|+
T Consensus 7 l~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~-----~~~~------------------~~~~~~~~~~~D~ 61 (257)
T 3tl3_A 7 IRDAVAVVTGGASGLGLATTKRLLDA--GAQVVVLDIRGE-----DVVA------------------DLGDRARFAAADV 61 (257)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHH--TCEEEEEESSCH-----HHHH------------------HTCTTEEEEECCT
T ss_pred ecCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCchH-----HHHH------------------hcCCceEEEECCC
Confidence 57899999999999999999999999 778899998421 1111 1235789999999
Q ss_pred CCCCCCCCHHHHHhhcC------CccEEEEcccccC-----------ccccHHHHHHHhHHHHHHHHHHHHHc-------
Q psy7542 139 AVPDLGISAEDRQMLSE------TIHIVYHIAATVR-----------FDDYMQTYVFLNTRGTRDMLNLSKQM------- 194 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~------~vDiViH~AA~v~-----------f~~~l~~~~~~NV~GT~~LLelA~~~------- 194 (762)
++++ +++.+++ .+|++||+||... ..+.++..+++|+.|+..+++++...
T Consensus 62 ~~~~------~v~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~ 135 (257)
T 3tl3_A 62 TDEA------AVASALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPV 135 (257)
T ss_dssp TCHH------HHHHHHHHHHHHSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCHH------HHHHHHHHHHHhCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhccc
Confidence 9876 5555544 7999999999642 12456789999999999999998753
Q ss_pred ----CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHH
Q psy7542 195 ----IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEY 270 (762)
Q Consensus 195 ----~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~ 270 (762)
.+-.++|++||..+..... . ...|+.||+..+.+.+..
T Consensus 136 ~~~~~~~g~iv~isS~~~~~~~~------------~--------------------------~~~Y~asKaa~~~~~~~l 177 (257)
T 3tl3_A 136 GPNAEERGVIINTASVAAFDGQI------------G--------------------------QAAYSASKGGVVGMTLPI 177 (257)
T ss_dssp --CCCCSEEEEEECCCC--CCHH------------H--------------------------HHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCcEEEEEcchhhcCCCC------------C--------------------------CccHHHHHHHHHHHHHHH
Confidence 1235899999986543210 0 047999999888888776
Q ss_pred HH----cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 271 ME----AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 271 ~~----~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
+. .|+.+..++||.|..+.... .+............ ....+...+|+|++++.++....
T Consensus 178 a~e~~~~gI~vn~v~PG~v~T~~~~~---------~~~~~~~~~~~~~~--------~~~r~~~p~dva~~v~~l~s~~~ 240 (257)
T 3tl3_A 178 ARDLASHRIRVMTIAPGLFDTPLLAS---------LPEEARASLGKQVP--------HPSRLGNPDEYGALAVHIIENPM 240 (257)
T ss_dssp HHHHGGGTEEEEEEEECSBCCTTC------------CHHHHHHHHHTSS--------SSCSCBCHHHHHHHHHHHHHCTT
T ss_pred HHHhcccCcEEEEEEecCccChhhhh---------ccHHHHHHHHhcCC--------CCCCccCHHHHHHHHHHHhcCCC
Confidence 55 38999999999886653221 11122222222110 11357889999999999998644
Q ss_pred CCCCCCceEEEecCC
Q psy7542 347 SNPGNTMRVINLTAN 361 (762)
Q Consensus 347 ~~~~~~~~iyNi~s~ 361 (762)
. .++++++.++
T Consensus 241 i----tG~~i~vdGG 251 (257)
T 3tl3_A 241 L----NGEVIRLDGA 251 (257)
T ss_dssp C----CSCEEEESTT
T ss_pred C----CCCEEEECCC
Confidence 4 5889999887
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-16 Score=161.55 Aligned_cols=218 Identities=14% Similarity=0.113 Sum_probs=147.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|... +++++.+ .....++.++.+|+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~-----~~~~~~~--------------~~~~~~~~~~~~Dv 63 (249)
T 2ew8_A 5 LKDKLAVITGGANGIGRAIAERFAVE--GADIAIADLVPA-----PEAEAAI--------------RNLGRRVLTVKCDV 63 (249)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCC-----HHHHHHH--------------HHTTCCEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEcCCch-----hHHHHHH--------------HhcCCcEEEEEeec
Confidence 57899999999999999999999998 778999999652 1122111 11125788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHH----HcCCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSK----QMIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~----~~~~lk~f 200 (762)
++++ ++++++ ..+|+|||+||.... .+.++..+++|+.|+.++++++. +. +..++
T Consensus 64 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~i 136 (249)
T 2ew8_A 64 SQPG------DVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRN-GWGRI 136 (249)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEE
Confidence 9865 555543 479999999997542 23466789999999888887753 33 45799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... ....|+.||+..|.+.+..+.. |++
T Consensus 137 v~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~ 178 (249)
T 2ew8_A 137 INLTSTTYWLKIE--------------------------------------AYTHYISTKAANIGFTRALASDLGKDGIT 178 (249)
T ss_dssp EEECCGGGGSCCS--------------------------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEcchhhccCCC--------------------------------------CchhHHHHHHHHHHHHHHHHHHHHhcCcE
Confidence 9999986643211 0157999999999999887652 899
Q ss_pred EEEEeeeeeccCCCC-CCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 277 CMILRPSIIIPIWKD-PLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 277 v~IvRPs~V~G~~~e-P~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
+++++||.|.++... ..+ ... .... .... .....+..++|+|++++.++..... ...+++
T Consensus 179 v~~v~Pg~v~t~~~~~~~~---~~~---~~~~----~~~~-------~~~~~~~~p~dva~~~~~l~s~~~~--~~tG~~ 239 (249)
T 2ew8_A 179 VNAIAPSLVRTATTEASAL---SAM---FDVL----PNML-------QAIPRLQVPLDLTGAAAFLASDDAS--FITGQT 239 (249)
T ss_dssp EEEEEECCC----------------------------CTT-------SSSCSCCCTHHHHHHHHHHTSGGGT--TCCSCE
T ss_pred EEEEecCcCcCccchhccc---cch---hhHH----HHhh-------CccCCCCCHHHHHHHHHHHcCcccC--CCCCcE
Confidence 999999998776422 100 000 0000 0000 1123478899999999998865432 124788
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+++.++
T Consensus 240 ~~vdGG 245 (249)
T 2ew8_A 240 LAVDGG 245 (249)
T ss_dssp EEESSS
T ss_pred EEECCC
Confidence 998876
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-16 Score=164.53 Aligned_cols=219 Identities=14% Similarity=0.115 Sum_probs=152.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|... ++++++.+ .+ .....++.++.+|+
T Consensus 26 l~~k~vlVTGas~gIG~aia~~la~~--G~~V~~~~~~~~-----~~~~~~~~-----~~------~~~~~~~~~~~~D~ 87 (269)
T 4dmm_A 26 LTDRIALVTGASRGIGRAIALELAAA--GAKVAVNYASSA-----GAADEVVA-----AI------AAAGGEAFAVKADV 87 (269)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCH-----HHHHHHHH-----HH------HHTTCCEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCCh-----HHHHHHHH-----HH------HhcCCcEEEEECCC
Confidence 57999999999999999999999998 778888888532 22222111 11 11235789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 88 ~d~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv 161 (269)
T 4dmm_A 88 SQES------EVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRII 161 (269)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9875 5555544 78999999997642 2456778999999999999987432 2446999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... ....|+.||+..+.+.+..+. .|+++
T Consensus 162 ~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~l~~~la~e~~~~gi~v 203 (269)
T 4dmm_A 162 NIASVVGEMGNP--------------------------------------GQANYSAAKAGVIGLTKTVAKELASRGITV 203 (269)
T ss_dssp EECCHHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred EECchhhcCCCC--------------------------------------CchhHHHHHHHHHHHHHHHHHHHhhhCcEE
Confidence 999985432110 015799999988888777665 38999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
++++||.|.++.... ........ ......+..++|+|++++.++..+... -..+++++
T Consensus 204 n~v~PG~v~T~~~~~------------~~~~~~~~---------~~p~~r~~~~~dvA~~v~~l~s~~~~~-~itG~~i~ 261 (269)
T 4dmm_A 204 NAVAPGFIATDMTSE------------LAAEKLLE---------VIPLGRYGEAAEVAGVVRFLAADPAAA-YITGQVIN 261 (269)
T ss_dssp EEEEECCBTTSCSCH------------HHHHHHGG---------GCTTSSCBCHHHHHHHHHHHHHCGGGG-GCCSCEEE
T ss_pred EEEEECCCcCccccc------------ccHHHHHh---------cCCCCCCCCHHHHHHHHHHHhCCcccC-CCcCCEEE
Confidence 999999887653210 00111111 112245778999999999998763220 11478999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 262 vdGG 265 (269)
T 4dmm_A 262 IDGG 265 (269)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9887
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=164.69 Aligned_cols=222 Identities=13% Similarity=0.079 Sum_probs=150.8
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
..++|+||||||+|+||++++++|++. +.+|+++.|..... ..+.++++ .....++.++.+|
T Consensus 10 ~~~~k~vlITGas~giG~~ia~~l~~~--G~~v~~~~~~~~~~-~~~~~~~~---------------~~~~~~~~~~~~D 71 (256)
T 3ezl_A 10 VMSQRIAYVTGGMGGIGTSICQRLHKD--GFRVVAGCGPNSPR-RVKWLEDQ---------------KALGFDFYASEGN 71 (256)
T ss_dssp ---CEEEEETTTTSHHHHHHHHHHHHT--TEEEEEEECTTCSS-HHHHHHHH---------------HHTTCCCEEEECC
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCCHHH-HHHHHHHH---------------HhcCCeeEEEecC
Confidence 458899999999999999999999998 77888888543322 12222221 1123578999999
Q ss_pred cCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 138 VAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
+++++ +++++++ .+|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++
T Consensus 72 v~~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~i 145 (256)
T 3ezl_A 72 VGDWD------STKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRI 145 (256)
T ss_dssp TTCHH------HHHHHHHHHHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEE
Confidence 99865 4555443 68999999997642 2456779999999988887776431 245789
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... + ...|+.||+..+.+++..+. .|++
T Consensus 146 v~isS~~~~~~~~---------~-----------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~ 187 (256)
T 3ezl_A 146 INISSVNGQKGQF---------G-----------------------------QTNYSTAKAGIHGFTMSLAQEVATKGVT 187 (256)
T ss_dssp EEECCCCGGGSCS---------C-----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEcchhhccCCC---------C-----------------------------CcccHHHHHHHHHHHHHHHHHHHHhCCE
Confidence 9999986542211 0 15799999988888877665 3899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+.+++||.|.++.... . .......+... .....+...+|+|++++.++..... ...++++
T Consensus 188 v~~v~PG~v~t~~~~~--------~-~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~s~~~~--~~tG~~i 247 (256)
T 3ezl_A 188 VNTVSPGYIGTDMVKA--------I-RPDVLEKIVAT---------IPVRRLGSPDEIGSIVAWLASEESG--FSTGADF 247 (256)
T ss_dssp EEEEEECSBCCHHHHT--------S-CHHHHHHHHHH---------STTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEEECcccCccccc--------c-CHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCCccc--CCcCcEE
Confidence 9999999886553211 0 11222222211 1223577899999999988865432 1257899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.+|
T Consensus 248 ~vdgG 252 (256)
T 3ezl_A 248 SLNGG 252 (256)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 99887
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=167.27 Aligned_cols=217 Identities=12% Similarity=0.089 Sum_probs=149.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ ....++.++.+|+
T Consensus 25 l~gk~vlVTGas~gIG~aia~~la~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~Dv 82 (266)
T 3grp_A 25 LTGRKALVTGATGGIGEAIARCFHAQ--GAIVGLHGTRE------DKLKEIAA--------------DLGKDVFVFSANL 82 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH--------------HHCSSEEEEECCT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH--------------HhCCceEEEEeec
Confidence 58999999999999999999999999 77888888853 33333211 1235789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++++++ .+|+|||+||.... .+.++..+++|+.|+..+.+.+... .+..++|
T Consensus 83 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv 156 (266)
T 3grp_A 83 SDRK------SIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRII 156 (266)
T ss_dssp TSHH------HHHHHHHHHHHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9875 5555544 78999999997542 2456778999999977777666431 2457999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... ....|+.||+..+.+.+..+. .|+++
T Consensus 157 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gI~v 198 (266)
T 3grp_A 157 NITSIVGVVGNP--------------------------------------GQTNYCAAKAGLIGFSKALAQEIASRNITV 198 (266)
T ss_dssp EECCC---------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECCHHHcCCCC--------------------------------------CchhHHHHHHHHHHHHHHHHHHhhhhCcEE
Confidence 999986532210 015799999988888877665 38999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
.+++||.|.++..... ..........+ .....+..++|+|++++.++...... ..+++++
T Consensus 199 n~v~PG~v~t~~~~~~---------~~~~~~~~~~~---------~p~~r~~~~edvA~~v~~L~s~~~~~--itG~~i~ 258 (266)
T 3grp_A 199 NCIAPGFIKSAMTDKL---------NEKQKEAIMAM---------IPMKRMGIGEEIAFATVYLASDEAAY--LTGQTLH 258 (266)
T ss_dssp EEEEECSBCSHHHHTC---------CHHHHHHHHTT---------CTTCSCBCHHHHHHHHHHHHSGGGTT--CCSCEEE
T ss_pred EEEeeCcCCCchhhcc---------CHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCccccC--ccCCEEE
Confidence 9999998866532110 11122222221 22345778999999999988755431 2578999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 259 vdGG 262 (266)
T 3grp_A 259 INGG 262 (266)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9877
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=167.96 Aligned_cols=215 Identities=13% Similarity=0.087 Sum_probs=149.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|..... .....+.+|+
T Consensus 26 l~gk~vlVTGas~gIG~aia~~la~~--G~~V~~~~r~~~~~----------------------------~~~~~~~~Dv 75 (266)
T 3uxy_A 26 FEGKVALVTGAAGGIGGAVVTALRAA--GARVAVADRAVAGI----------------------------AADLHLPGDL 75 (266)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEECSSCCTTS----------------------------CCSEECCCCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHH----------------------------HhhhccCcCC
Confidence 57999999999999999999999998 77889988865321 1223457898
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHH----HcCCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSK----QMIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~----~~~~lk~f 200 (762)
++++ +...++ ..+|++||+||.... .+.++..+++|+.|+.++++++. +. +..++
T Consensus 76 ~~~~------~~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~i 148 (266)
T 3uxy_A 76 REAA------YADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAA-GGGAI 148 (266)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEE
Confidence 8765 344333 379999999998652 24567789999999999999983 33 45799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... . ...|+.||+..|.+++..+.. |++
T Consensus 149 v~isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gI~ 190 (266)
T 3uxy_A 149 VNVASCWGLRPGP----------G----------------------------HALYCLTKAALASLTQCMGMDHAPQGIR 190 (266)
T ss_dssp EEECCSBTTBCCT----------T----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEECCHHhCCCCC----------C----------------------------ChHHHHHHHHHHHHHHHHHHHhhhcCcE
Confidence 9999986643211 0 157999999999998877652 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+++++||.|.++..... +......+........ .......+..++|+|++++.++...... ..++++
T Consensus 191 vn~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~~~---------~~~p~~r~~~pedvA~~v~~L~s~~~~~--itG~~i 257 (266)
T 3uxy_A 191 INAVCPNEVNTPMLRTG--FAKRGFDPDRAVAELG---------RTVPLGRIAEPEDIADVVLFLASDAARY--LCGSLV 257 (266)
T ss_dssp EEEEEESSBCCHHHHHH--HHHTTCCHHHHHHHHH---------TTSTTSSCBCHHHHHHHHHHHHSGGGTT--CCSCEE
T ss_pred EEEEeeCCCcchHhhhh--hhcccccchHHHHHHH---------hcCCCCCCcCHHHHHHHHHHHhCchhcC--CcCCEE
Confidence 99999998866521100 0000000111111111 1122346789999999999988765431 247899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.+|
T Consensus 258 ~vdGG 262 (266)
T 3uxy_A 258 EVNGG 262 (266)
T ss_dssp EESTT
T ss_pred EECcC
Confidence 99887
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=167.90 Aligned_cols=222 Identities=16% Similarity=0.084 Sum_probs=145.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|... ++++++.+ .+ .....++.++.+|+
T Consensus 27 ~~~k~~lVTGas~GIG~aia~~la~~--G~~V~~~~~~~~-----~~~~~~~~-----~~------~~~~~~~~~~~~Dv 88 (280)
T 4da9_A 27 KARPVAIVTGGRRGIGLGIARALAAS--GFDIAITGIGDA-----EGVAPVIA-----EL------SGLGARVIFLRADL 88 (280)
T ss_dssp CCCCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCCH-----HHHHHHHH-----HH------HHTTCCEEEEECCT
T ss_pred cCCCEEEEecCCCHHHHHHHHHHHHC--CCeEEEEeCCCH-----HHHHHHHH-----HH------HhcCCcEEEEEecC
Confidence 47899999999999999999999998 778888887432 22222211 11 11236799999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccC---------ccccHHHHHHHhHHHHHHHHHHHHHc---CC---
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVR---------FDDYMQTYVFLNTRGTRDMLNLSKQM---IH--- 196 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~---------f~~~l~~~~~~NV~GT~~LLelA~~~---~~--- 196 (762)
++++ +++++++ .+|++||+||... -.+.++..+++|+.|+.++++++... .+
T Consensus 89 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~ 162 (280)
T 4da9_A 89 ADLS------SHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARA 162 (280)
T ss_dssp TSGG------GHHHHHHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 9976 4555444 7899999999732 12456778899999999998887643 11
Q ss_pred ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---
Q psy7542 197 LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--- 273 (762)
Q Consensus 197 lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--- 273 (762)
..++|++||..+..... ....|+.||+..+.+.+..+..
T Consensus 163 ~g~Iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~ 204 (280)
T 4da9_A 163 SRSIINITSVSAVMTSP--------------------------------------ERLDYCMSKAGLAAFSQGLALRLAE 204 (280)
T ss_dssp CEEEEEECCC---------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcchhhccCCC--------------------------------------CccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999986542210 0147999999999998887653
Q ss_pred -CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCC
Q psy7542 274 -GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNT 352 (762)
Q Consensus 274 -glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~ 352 (762)
|+++..++||.|.++......+ ........+ ......+..++|+|++++.++..... -..
T Consensus 205 ~gI~vn~v~PG~v~T~~~~~~~~---------~~~~~~~~~--------~~p~~r~~~pedvA~~v~~L~s~~~~--~it 265 (280)
T 4da9_A 205 TGIAVFEVRPGIIRSDMTAAVSG---------KYDGLIESG--------LVPMRRWGEPEDIGNIVAGLAGGQFG--FAT 265 (280)
T ss_dssp TTEEEEEEEECCBCC---------------------------------------CCBCHHHHHHHHHHHHTSTTG--GGT
T ss_pred hCcEEEEEeecCCcCCchhhcch---------hHHHHHhhc--------CCCcCCcCCHHHHHHHHHHHhCcccc--CCC
Confidence 8999999999987664321110 000000010 11224577899999999998875432 114
Q ss_pred ceEEEecCC
Q psy7542 353 MRVINLTAN 361 (762)
Q Consensus 353 ~~iyNi~s~ 361 (762)
++++++.+|
T Consensus 266 G~~i~vdGG 274 (280)
T 4da9_A 266 GSVIQADGG 274 (280)
T ss_dssp TCEEEESTT
T ss_pred CCEEEECCC
Confidence 789999887
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.1e-17 Score=169.81 Aligned_cols=221 Identities=14% Similarity=0.125 Sum_probs=152.9
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
..++||+||||||+|+||++++++|++. +.+|+++.|..... ...+..+.+
T Consensus 10 ~~~~~k~vlVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~---------------------------~~~~~~~~~ 60 (269)
T 3vtz_A 10 EEFTDKVAIVTGGSSGIGLAVVDALVRY--GAKVVSVSLDEKSD---------------------------VNVSDHFKI 60 (269)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCC--C---------------------------TTSSEEEEC
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCchhc---------------------------cCceeEEEe
Confidence 4468999999999999999999999998 77889999875321 135678899
Q ss_pred ecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccE
Q psy7542 137 DVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQL 199 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~ 199 (762)
|+++++ +++++++ .+|++||+||.... .+.++..+++|+.|+..+++++... .+..+
T Consensus 61 Dv~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~ 134 (269)
T 3vtz_A 61 DVTNEE------EVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGS 134 (269)
T ss_dssp CTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE
T ss_pred cCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCE
Confidence 999865 5555544 78999999997542 1346678999999999999887642 24579
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---CCC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---GMP 276 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---glp 276 (762)
+|++||..+..... ....|+.||+..|.+++..+.. ++.
T Consensus 135 iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~i~ 176 (269)
T 3vtz_A 135 IINIASVQSYAATK--------------------------------------NAAAYVTSKHALLGLTRSVAIDYAPKIR 176 (269)
T ss_dssp EEEECCGGGTSBCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred EEEECchhhccCCC--------------------------------------CChhHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999986643211 0157999999999999887764 799
Q ss_pred EEEEeeeeeccCCCCCCCCCC--CCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 277 CMILRPSIIIPIWKDPLPGWT--DNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWi--dn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
+.+++||.|.++......... .............. .......+..++|+|++++.++...... ..++
T Consensus 177 vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~p~~r~~~pedvA~~v~~L~s~~~~~--itG~ 245 (269)
T 3vtz_A 177 CNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWG---------RQHPMGRIGRPEEVAEVVAFLASDRSSF--ITGA 245 (269)
T ss_dssp EEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHH---------HHSTTSSCBCHHHHHHHHHHHHSGGGTT--CCSC
T ss_pred EEEEEECCCcCcchhhhhhccccccchhhHHHHHHHH---------hcCCCCCCcCHHHHHHHHHHHhCCccCC--CcCc
Confidence 999999988664211000000 00000001111111 1122345788999999999988765431 2578
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
++++.+|
T Consensus 246 ~i~vdGG 252 (269)
T 3vtz_A 246 CLTVDGG 252 (269)
T ss_dssp EEEESTT
T ss_pred EEEECCC
Confidence 9999987
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-16 Score=162.91 Aligned_cols=217 Identities=13% Similarity=0.067 Sum_probs=152.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ ....++..+.+|+
T Consensus 7 l~gk~~lVTGas~gIG~a~a~~l~~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~Dv 64 (248)
T 3op4_A 7 LEGKVALVTGASRGIGKAIAELLAER--GAKVIGTATSE------SGAQAISD--------------YLGDNGKGMALNV 64 (248)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSH------HHHHHHHH--------------HHGGGEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH--------------HhcccceEEEEeC
Confidence 47899999999999999999999998 77889998863 22222211 1123567899999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 65 ~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv 138 (248)
T 3op4_A 65 TNPE------SIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRII 138 (248)
T ss_dssp TCHH------HHHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEE
Confidence 9875 5665554 78999999997642 2456778999999999999988541 2457899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+.... | ....|+.||+..+.+.+..+. .|+++
T Consensus 139 ~isS~~~~~~~----------~----------------------------~~~~Y~asK~a~~~l~~~la~e~~~~gi~v 180 (248)
T 3op4_A 139 NVGSVVGTMGN----------A----------------------------GQANYAAAKAGVIGFTKSMAREVASRGVTV 180 (248)
T ss_dssp EECCHHHHHCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEcchhhcCCC----------C----------------------------CChHHHHHHHHHHHHHHHHHHHHHHhCeEE
Confidence 99997543211 0 015799999988888877665 38999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
++++||.|..+..... ..........+ .....+..++|+|++++.++..... ...+++++
T Consensus 181 n~v~PG~v~T~~~~~~---------~~~~~~~~~~~---------~p~~r~~~p~dva~~v~~L~s~~~~--~itG~~i~ 240 (248)
T 3op4_A 181 NTVAPGFIETDMTKAL---------NDEQRTATLAQ---------VPAGRLGDPREIASAVAFLASPEAA--YITGETLH 240 (248)
T ss_dssp EEEEECSBSSTTTTTS---------CHHHHHHHHHT---------CTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEeeCCCCCchhhhc---------CHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCCccC--CccCcEEE
Confidence 9999998866542211 11111111111 1224578999999999988865433 12478999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 241 vdgG 244 (248)
T 3op4_A 241 VNGG 244 (248)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9877
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-16 Score=168.22 Aligned_cols=220 Identities=13% Similarity=0.079 Sum_probs=154.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|..... ++-.+++ . .....++.++.+|+
T Consensus 39 l~~k~vlVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~--~~~~~~l-~-------------~~~~~~~~~~~~Dv 100 (293)
T 3rih_A 39 LSARSVLVTGGTKGIGRGIATVFARA--GANVAVAARSPREL--SSVTAEL-G-------------ELGAGNVIGVRLDV 100 (293)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSGGGG--HHHHHHH-T-------------TSSSSCEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHH--HHHHHHH-H-------------hhCCCcEEEEEEeC
Confidence 58999999999999999999999998 77899999975321 1111111 1 11125789999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHH----HcCCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSK----QMIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~----~~~~lk~f 200 (762)
++++ ++++++ ..+|++||+||.... .+.++..+++|+.|+.++++++. +. +..++
T Consensus 101 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~i 173 (293)
T 3rih_A 101 SDPG------SCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTAS-GRGRV 173 (293)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH-SSCEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEE
Confidence 9875 454443 368999999997542 24567789999999999999884 33 45799
Q ss_pred EEEeCCccc-CCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCC
Q psy7542 201 VYVSTAYCH-PKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGM 275 (762)
Q Consensus 201 V~vSSay~~-~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 275 (762)
|++||..+. ... | ....|+.||+..+.+++..+. .|+
T Consensus 174 V~isS~~~~~~~~----------~----------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI 215 (293)
T 3rih_A 174 ILTSSITGPVTGY----------P----------------------------GWSHYGASKAAQLGFMRTAAIELAPRGV 215 (293)
T ss_dssp EEECCSBTTTBBC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred EEEeChhhccCCC----------C----------------------------CCHHHHHHHHHHHHHHHHHHHHHhhhCe
Confidence 999998653 111 0 015799999999999887765 289
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
++++++||.|.++.... . ............ ....+...+|+|++++.++...... ..+++
T Consensus 216 ~vn~v~PG~v~t~~~~~--------~-~~~~~~~~~~~~---------p~~r~~~p~dvA~~v~fL~s~~a~~--itG~~ 275 (293)
T 3rih_A 216 TVNAILPGNILTEGLVD--------M-GEEYISGMARSI---------PMGMLGSPVDIGHLAAFLATDEAGY--ITGQA 275 (293)
T ss_dssp EEEEEEECSBCCHHHHH--------T-CHHHHHHHHTTS---------TTSSCBCHHHHHHHHHHHHSGGGTT--CCSCE
T ss_pred EEEEEecCCCcCcchhh--------c-cHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHhCccccC--CCCCE
Confidence 99999999987753210 0 112222222221 1223567899999999988654331 25789
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+++.+|
T Consensus 276 i~vdGG 281 (293)
T 3rih_A 276 IVVDGG 281 (293)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 999887
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=165.40 Aligned_cols=222 Identities=14% Similarity=0.111 Sum_probs=152.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.. ++++++ . ...++.++.+|+
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~---------------~-~~~~~~~~~~D~ 59 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFARE--GAKVIATDINE------SKLQEL---------------E-KYPGIQTRVLDV 59 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHGGG---------------G-GSTTEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHH---------------H-hccCceEEEeeC
Confidence 47899999999999999999999998 67899999853 222221 1 113688999999
Q ss_pred CCCCCCCCHHHHHhh---cCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEEeC
Q psy7542 139 AVPDLGISAEDRQML---SETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVST 205 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l---~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vSS 205 (762)
++++ +++++ ...+|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++||
T Consensus 60 ~~~~------~~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS 133 (246)
T 2ag5_A 60 TKKK------QIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSS 133 (246)
T ss_dssp TCHH------HHHHHHHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CCHH------HHHHHHHHhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEec
Confidence 9865 44444 4579999999997643 2456678999999999999988631 24579999999
Q ss_pred CcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEEEe
Q psy7542 206 AYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMILR 281 (762)
Q Consensus 206 ay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~IvR 281 (762)
..+..... .+ ...|+.||+..|.+++..+.. |++++++|
T Consensus 134 ~~~~~~~~--------~~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~ 176 (246)
T 2ag5_A 134 VASSVKGV--------VN-----------------------------RCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVC 176 (246)
T ss_dssp SBTTTBCC--------TT-----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hHhCcCCC--------CC-----------------------------CccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEe
Confidence 86543210 00 157999999999999887652 89999999
Q ss_pred eeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 282 PSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 282 Ps~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
||.|.++.... +......+.......... .....++..+|+|++++.++...... ..++++++.++
T Consensus 177 Pg~v~t~~~~~---~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~dvA~~v~~l~s~~~~~--~tG~~i~vdgG 242 (246)
T 2ag5_A 177 PGTVDTPSLQE---RIQARGNPEEARNDFLKR---------QKTGRFATAEEIAMLCVYLASDESAY--VTGNPVIIDGG 242 (246)
T ss_dssp ESCEECHHHHH---HHHHSSSHHHHHHHHHHT---------CTTSSCEEHHHHHHHHHHHHSGGGTT--CCSCEEEECTT
T ss_pred eCcCcCcchhh---hhhcccCcHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCccccC--CCCCEEEECCC
Confidence 99998763110 000000011111111111 11124788999999999988654321 14788998876
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-16 Score=165.57 Aligned_cols=223 Identities=10% Similarity=0.105 Sum_probs=154.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ ....++..+.+|+
T Consensus 25 l~~k~vlVTGas~GIG~aia~~l~~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~Dv 82 (277)
T 4dqx_A 25 LNQRVCIVTGGGSGIGRATAELFAKN--GAYVVVADVNE------DAAVRVAN--------------EIGSKAFGVRVDV 82 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSH------HHHHHHHH--------------HHCTTEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH--------------HhCCceEEEEecC
Confidence 57899999999999999999999998 77889999863 23332211 1235788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 83 ~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv 156 (277)
T 4dqx_A 83 SSAK------DAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSII 156 (277)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9865 5555554 78999999997532 2456778999999999999888542 2346999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+..... ....|+.||+..+.+++..+.. |+++
T Consensus 157 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~v 198 (277)
T 4dqx_A 157 NTTSYTATSAIA--------------------------------------DRTAYVASKGAISSLTRAMAMDHAKEGIRV 198 (277)
T ss_dssp EECCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECchhhCcCCC--------------------------------------CChhHHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 999986543211 0157999999999998877652 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
.+++||.|.++..... + .....+........ .......+..++|+|++++.++...... ..+++++
T Consensus 199 n~v~PG~v~T~~~~~~--~-~~~~~~~~~~~~~~---------~~~~~~r~~~pedvA~~v~~L~s~~~~~--itG~~i~ 264 (277)
T 4dqx_A 199 NAVAPGTIDSPYFTKI--F-AEAKDPAKLRSDFN---------ARAVMDRMGTAEEIAEAMLFLASDRSRF--ATGSILT 264 (277)
T ss_dssp EEEEECSBCCHHHHHH--H-HTCSCHHHHHHHHH---------TTSTTCSCBCHHHHHHHHHHHHSGGGTT--CCSCEEE
T ss_pred EEEeeCcCcCchhhhh--c-ccccchhHHHHHHH---------hcCcccCCcCHHHHHHHHHHHhCCccCC--CcCCEEE
Confidence 9999998865420000 0 00000111111111 1122345778999999999988755431 2578999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 265 vdGG 268 (277)
T 4dqx_A 265 VDGG 268 (277)
T ss_dssp ESSS
T ss_pred ECCc
Confidence 9887
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-16 Score=163.55 Aligned_cols=233 Identities=16% Similarity=0.106 Sum_probs=150.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|.. ++++++.+ .+... ....++.++.+|+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~~~~~----~~~~~~~~~~~D~ 67 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARN--GARLLLFSRNR------EKLEAAAS-----RIASL----VSGAQVDIVAGDI 67 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHHHH----STTCCEEEEECCT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HHHhc----CCCCeEEEEEccC
Confidence 47899999999999999999999998 67899999863 22222211 11100 0012788999999
Q ss_pred CCCCCCCCHHHHHhhcC------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLSE------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~ 202 (762)
++++ +++.+++ ++|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|+
T Consensus 68 ~~~~------~v~~~~~~~~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~ 141 (260)
T 2z1n_A 68 REPG------DIDRLFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVY 141 (260)
T ss_dssp TCHH------HHHHHHHHHHHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 9865 5655554 49999999996532 2356778999999997777766431 25679999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~ 278 (762)
+||..+..... . ...|+.||+..+.+.+..+.. |++++
T Consensus 142 isS~~~~~~~~----------~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~ 183 (260)
T 2z1n_A 142 IGSVTLLRPWQ----------D----------------------------LALSNIMRLPVIGVVRTLALELAPHGVTVN 183 (260)
T ss_dssp ECCGGGTSCCT----------T----------------------------BHHHHHHTHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ECchhhcCCCC----------C----------------------------CchhHHHHHHHHHHHHHHHHHHhhhCeEEE
Confidence 99986643211 0 157999999999988877652 89999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
++|||.|.++...... .............. ...+ ........+..++|+|++++.++..... ...++++++
T Consensus 184 ~v~Pg~v~t~~~~~~~---~~~~~~~~~~~~~~---~~~~-~~~~p~~r~~~~~dva~~v~~l~s~~~~--~~tG~~i~v 254 (260)
T 2z1n_A 184 AVLPSLILTDRVRSLA---EERARRSGITVEEA---LKSM-ASRIPMGRVGKPEELASVVAFLASEKAS--FITGAVIPV 254 (260)
T ss_dssp EEEECHHHHCCCC------------------------------CCTTSSCCCHHHHHHHHHHHTSGGGT--TCCSCEEEE
T ss_pred EEEECCcccchhhhhh---hhhhcccCCcHHHH---HHHH-HhcCCCCCccCHHHHHHHHHHHhCcccc--CCCCCEEEe
Confidence 9999999887432100 00000000000000 0000 0111123478999999999998875432 124788998
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.++
T Consensus 255 dGG 257 (260)
T 2z1n_A 255 DGG 257 (260)
T ss_dssp STT
T ss_pred CCC
Confidence 876
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-16 Score=165.88 Aligned_cols=224 Identities=12% Similarity=0.013 Sum_probs=152.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ ....++.++.+|+
T Consensus 27 l~gk~vlVTGas~gIG~aia~~la~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~Dv 84 (277)
T 3gvc_A 27 LAGKVAIVTGAGAGIGLAVARRLADE--GCHVLCADIDG------DAADAAAT--------------KIGCGAAACRVDV 84 (277)
T ss_dssp CTTCEEEETTTTSTHHHHHHHHHHHT--TCEEEEEESSH------HHHHHHHH--------------HHCSSCEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH--------------HcCCcceEEEecC
Confidence 68999999999999999999999998 77899999863 22322211 1135788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+-.++|
T Consensus 85 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv 158 (277)
T 3gvc_A 85 SDEQ------QIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIV 158 (277)
T ss_dssp TCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9875 5555443 68999999997642 2456778999999999999888642 2456899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... ....|+.||+..+.+++..+. .|+++
T Consensus 159 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~v 200 (277)
T 3gvc_A 159 NLSSLAGQVAVG--------------------------------------GTGAYGMSKAGIIQLSRITAAELRSSGIRS 200 (277)
T ss_dssp EECCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEcchhhccCCC--------------------------------------CchhHHHHHHHHHHHHHHHHHHhcccCeEE
Confidence 999986543211 015799999999999887665 38999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
++++||.|.++.........+.... ........ ......+..++|+|++++.++...... ..+++++
T Consensus 201 n~v~PG~v~t~~~~~~~~~~~~~~~-~~~~~~~~----------~~~~~r~~~pedvA~~v~~L~s~~a~~--itG~~i~ 267 (277)
T 3gvc_A 201 NTLLPAFVDTPMQQTAMAMFDGALG-AGGARSMI----------ARLQGRMAAPEEMAGIVVFLLSDDASM--ITGTTQI 267 (277)
T ss_dssp EEEEECSBCCHHHHHHHTCC-------CCHHHHH----------HHHHSSCBCHHHHHHHHHHHHSGGGTT--CCSCEEE
T ss_pred EEEeeCCccCchHHHhhhcchhhHH-HHhhhhhh----------hccccCCCCHHHHHHHHHHHcCCccCC--ccCcEEE
Confidence 9999998876531100000000000 00000000 011135788999999999988755431 2578999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 268 vdGG 271 (277)
T 3gvc_A 268 ADGG 271 (277)
T ss_dssp ESTT
T ss_pred ECCc
Confidence 9887
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.71 E-value=7e-17 Score=170.04 Aligned_cols=222 Identities=14% Similarity=0.063 Sum_probs=153.6
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
..+++|+||||||+|+||++++++|++. +.+|+++.|... +++++.+ .+ .....++..+.+
T Consensus 24 ~~l~~k~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~------~~~~~~~-----~~------~~~~~~~~~~~~ 84 (270)
T 3ftp_A 24 KTLDKQVAIVTGASRGIGRAIALELARR--GAMVIGTATTEA------GAEGIGA-----AF------KQAGLEGRGAVL 84 (270)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSHH------HHHHHHH-----HH------HHHTCCCEEEEC
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH-----HH------HhcCCcEEEEEE
Confidence 3468999999999999999999999998 778999998532 2222111 01 112357889999
Q ss_pred ecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccE
Q psy7542 137 DVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQL 199 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~ 199 (762)
|+++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+-.+
T Consensus 85 Dv~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~ 158 (270)
T 3ftp_A 85 NVNDAT------AVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGR 158 (270)
T ss_dssp CTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE
T ss_pred eCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCE
Confidence 999865 5555544 78999999997542 2456778999999999999988632 23468
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 275 (762)
+|++||..+..... ....|+.||+..+.+.+..+. .|+
T Consensus 159 iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI 200 (270)
T 3ftp_A 159 IVNITSVVGSAGNP--------------------------------------GQVNYAAAKAGVAGMTRALAREIGSRGI 200 (270)
T ss_dssp EEEECCHHHHHCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred EEEECchhhCCCCC--------------------------------------CchhHHHHHHHHHHHHHHHHHHHhhhCe
Confidence 99999985432110 015799999988888877665 389
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
++++++||.|.++..... +......... ......+..++|+|++++.++..... ...+++
T Consensus 201 ~vn~v~PG~v~T~~~~~~---------~~~~~~~~~~---------~~p~~r~~~pedvA~~v~~L~s~~~~--~itG~~ 260 (270)
T 3ftp_A 201 TVNCVAPGFIDTDMTKGL---------PQEQQTALKT---------QIPLGRLGSPEDIAHAVAFLASPQAG--YITGTT 260 (270)
T ss_dssp EEEEEEECSBCSHHHHHS---------CHHHHHHHHT---------TCTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCE
T ss_pred EEEEEEeCCCcCcchhhc---------CHHHHHHHHh---------cCCCCCCCCHHHHHHHHHHHhCCCcC--CccCcE
Confidence 999999998865421100 1111111111 12234578999999999988864432 125789
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+++.+|
T Consensus 261 i~vdGG 266 (270)
T 3ftp_A 261 LHVNGG 266 (270)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 999887
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-16 Score=171.99 Aligned_cols=173 Identities=18% Similarity=0.251 Sum_probs=125.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. |.+|++.+|...+.. .++++++.+ .+ .....++.++.+|+
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~--G~~V~~~~r~~~~r~-~~~~~~l~~-----~~------~~~~~~~~~~~~Dv 68 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGA--GHRVYASMRDIVGRN-ASNVEAIAG-----FA------RDNDVDLRTLELDV 68 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESCTTTTT-HHHHHHHHH-----HH------HHHTCCEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEecCcccccC-HHHHHHHHH-----HH------HhcCCcEEEEEeec
Confidence 36899999999999999999999998 788999999744332 233333211 00 11236799999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHH----HHcCCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLS----KQMIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA----~~~~~lk~f 200 (762)
++++ +++++++ .+|+|||+||.... .+.++..+++|+.|+.++++++ ++. +..++
T Consensus 69 td~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~-~~g~i 141 (324)
T 3u9l_A 69 QSQV------SVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQ-KHGLL 141 (324)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEE
Confidence 9865 5666555 79999999996532 2446678999999999999998 333 56799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... | ....|+.||+..|.+++..+.. |++
T Consensus 142 V~isS~~~~~~~~---------~----------------------------~~~~Y~asKaa~~~~~~~la~el~~~gI~ 184 (324)
T 3u9l_A 142 IWISSSSSAGGTP---------P----------------------------YLAPYFAAKAAMDAIAVQYARELSRWGIE 184 (324)
T ss_dssp EEECCGGGTSCCC---------S----------------------------SCHHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred EEEecchhccCCC---------C----------------------------cchhHHHHHHHHHHHHHHHHHHhhhhCcE
Confidence 9999986542110 0 0157999999999999887663 899
Q ss_pred EEEEeeeeeccCC
Q psy7542 277 CMILRPSIIIPIW 289 (762)
Q Consensus 277 v~IvRPs~V~G~~ 289 (762)
+++++||.|.++.
T Consensus 185 v~~v~PG~v~t~~ 197 (324)
T 3u9l_A 185 TSIIVPGAFTSGT 197 (324)
T ss_dssp EEEEEECCC----
T ss_pred EEEEECCccccCc
Confidence 9999999987543
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-16 Score=165.76 Aligned_cols=221 Identities=14% Similarity=0.083 Sum_probs=156.3
Q ss_pred ccCCCEEEEECCCCh--hHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 58 TLEHKNIFITGASGF--VGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 58 ~~~gk~VLVTGATGF--LG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
.+++|+||||||||+ ||++++++|++. +.+|+++.|.. ..+.++++.+ ...++.++.
T Consensus 23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~--G~~V~~~~r~~----~~~~~~~l~~---------------~~~~~~~~~ 81 (280)
T 3nrc_A 23 FLAGKKILITGLLSNKSIAYGIAKAMHRE--GAELAFTYVGQ----FKDRVEKLCA---------------EFNPAAVLP 81 (280)
T ss_dssp TTTTCEEEECCCCSTTCHHHHHHHHHHHT--TCEEEEEECTT----CHHHHHHHHG---------------GGCCSEEEE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHc--CCEEEEeeCch----HHHHHHHHHH---------------hcCCceEEE
Confidence 357899999999988 999999999998 77899999976 2334444321 124688999
Q ss_pred eecCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc------------cccHHHHHHHhHHHHHHHHHHHHHc--
Q psy7542 136 GDVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF------------DDYMQTYVFLNTRGTRDMLNLSKQM-- 194 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f------------~~~l~~~~~~NV~GT~~LLelA~~~-- 194 (762)
+|+++++ ++++++ ..+|+|||+||.... .+.+...+++|+.|+.++++++...
T Consensus 82 ~Dl~~~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~ 155 (280)
T 3nrc_A 82 CDVISDQ------EIKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMK 155 (280)
T ss_dssp CCTTCHH------HHHHHHHHHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred eecCCHH------HHHHHHHHHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999865 555544 357999999997642 2345668999999999999998753
Q ss_pred CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH--
Q psy7542 195 IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME-- 272 (762)
Q Consensus 195 ~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~-- 272 (762)
.+-.++|++||..+..... . ...|+.||+..+.+++..+.
T Consensus 156 ~~~g~iv~isS~~~~~~~~----------~----------------------------~~~Y~asKaal~~~~~~la~e~ 197 (280)
T 3nrc_A 156 NRNASMVALTYIGAEKAMP----------S----------------------------YNTMGVAKASLEATVRYTALAL 197 (280)
T ss_dssp TTTCEEEEEECGGGTSCCT----------T----------------------------THHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEeccccccCCC----------C----------------------------chhhHHHHHHHHHHHHHHHHHH
Confidence 1346899999986543211 0 15799999999999887665
Q ss_pred --cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCC
Q psy7542 273 --AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPG 350 (762)
Q Consensus 273 --~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~ 350 (762)
.|+.+.+++||.|.++.... .............. .....+..++|+|++++.++..... .
T Consensus 198 ~~~gi~v~~v~PG~v~T~~~~~-------~~~~~~~~~~~~~~---------~p~~~~~~pedvA~~v~~l~s~~~~--~ 259 (280)
T 3nrc_A 198 GEDGIKVNAVSAGPIKTLAASG-------ISNFKKMLDYNAMV---------SPLKKNVDIMEVGNTVAFLCSDMAT--G 259 (280)
T ss_dssp GGGTCEEEEEEECCCCCSGGGG-------CTTHHHHHHHHHHH---------STTCSCCCHHHHHHHHHHTTSGGGT--T
T ss_pred HHcCcEEEEEeeccccchhhhc-------CcchHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCcccC--C
Confidence 38999999999987754321 11112222222111 1123467899999999998875432 1
Q ss_pred CCceEEEecCC
Q psy7542 351 NTMRVINLTAN 361 (762)
Q Consensus 351 ~~~~iyNi~s~ 361 (762)
..++++++.+|
T Consensus 260 ~tG~~i~vdgG 270 (280)
T 3nrc_A 260 ITGEVVHVDAG 270 (280)
T ss_dssp CCSCEEEESTT
T ss_pred cCCcEEEECCC
Confidence 25789999887
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-17 Score=171.73 Aligned_cols=234 Identities=14% Similarity=0.082 Sum_probs=152.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|... ++++.. +.+.. .....++.++.+|+
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~------~~~~~~-----~~l~~----~~~~~~~~~~~~D~ 67 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLK--GAKVALVDWNLE------AGVQCK-----AALHE----QFEPQKTLFIQCDV 67 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHH------HHHHHH-----HHHTT----TSCGGGEEEEECCT
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHC--CCEEEEEECCHH------HHHHHH-----HHHHh----hcCCCceEEEecCC
Confidence 47899999999999999999999998 778899998632 222111 01110 00124688999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHH----HcC--CccEEEEEeC
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSK----QMI--HLQLFVYVST 205 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~----~~~--~lk~fV~vSS 205 (762)
++++ +++.+++ .+|+|||+||... .+.++..+++|+.|+..+.+.+. +.+ +..++|++||
T Consensus 68 ~~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS 140 (267)
T 2gdz_A 68 ADQQ------QLRDTFRKVVDHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS 140 (267)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCC-SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCC-hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCC
Confidence 9865 5555544 5799999999754 45678899999997766655543 321 1578999999
Q ss_pred CcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHH------HcCCCEEE
Q psy7542 206 AYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYM------EAGMPCMI 279 (762)
Q Consensus 206 ay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~------~~glpv~I 279 (762)
..+..... . ...|+.||+..|.+++..+ ..|+++++
T Consensus 141 ~~~~~~~~----------~----------------------------~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~ 182 (267)
T 2gdz_A 141 LAGLMPVA----------Q----------------------------QPVYCASKHGIVGFTRSAALAANLMNSGVRLNA 182 (267)
T ss_dssp GGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ccccCCCC----------C----------------------------CchHHHHHHHHHHHHHHHHHHHHhccCCcEEEE
Confidence 87653211 0 1479999999999988632 23899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
++||.|.++... ...... ..... ......+ ..+.....+++++|+|++++.++..... .+++++++
T Consensus 183 v~Pg~v~t~~~~-------~~~~~~-~~~~~-~~~~~~~-~~~~~~~~~~~~~dvA~~v~~l~s~~~~----~G~~~~v~ 248 (267)
T 2gdz_A 183 ICPGFVNTAILE-------SIEKEE-NMGQY-IEYKDHI-KDMIKYYGILDPPLIANGLITLIEDDAL----NGAIMKIT 248 (267)
T ss_dssp EEESCBSSHHHH-------GGGCHH-HHGGG-GGGHHHH-HHHHHHHCCBCHHHHHHHHHHHHHCTTC----SSCEEEEE
T ss_pred EecCcCcchhhh-------cccccc-ccchh-hhHHHHH-HHHhccccCCCHHHHHHHHHHHhcCcCC----CCcEEEec
Confidence 999988654211 000000 00000 0000000 0001123478999999999999886543 57899999
Q ss_pred CCCCCcccHHH
Q psy7542 360 ANKDFQITWYD 370 (762)
Q Consensus 360 s~~~~piT~~e 370 (762)
++ ..+++.|
T Consensus 249 gg--~~~~~~~ 257 (267)
T 2gdz_A 249 TS--KGIHFQD 257 (267)
T ss_dssp TT--TEEEECC
T ss_pred CC--CcccccC
Confidence 87 6666544
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-16 Score=162.75 Aligned_cols=224 Identities=13% Similarity=0.107 Sum_probs=152.4
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
||+||||||+|+||++++++|++.+.+++|++..|.. ++++++.+ ....++.++.+|+++
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~Dv~~ 61 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSE------APLKKLKE--------------KYGDRFFYVVGDITE 61 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCH------HHHHHHHH--------------HHGGGEEEEESCTTS
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCH------HHHHHHHH--------------HhCCceEEEECCCCC
Confidence 6899999999999999999999997677899888863 23333211 112578899999998
Q ss_pred CCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHH----HcCCccEEE
Q psy7542 141 PDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSK----QMIHLQLFV 201 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~----~~~~lk~fV 201 (762)
++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++. +. + .++|
T Consensus 62 ~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~-g~iv 133 (254)
T 3kzv_A 62 DS------VLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKT-N-GNVV 133 (254)
T ss_dssp HH------HHHHHHHHHHHHHSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-T-CEEE
T ss_pred HH------HHHHHHHHHHHhcCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-C-CeEE
Confidence 75 5555544 78999999997532 14466789999999999999883 33 3 6999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--CCCEEE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--GMPCMI 279 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--glpv~I 279 (762)
++||..+..... + ...|+.||+..+.+.+..+.. ++++..
T Consensus 134 ~isS~~~~~~~~---------~-----------------------------~~~Y~asK~a~~~~~~~la~e~~~i~vn~ 175 (254)
T 3kzv_A 134 FVSSDACNMYFS---------S-----------------------------WGAYGSSKAALNHFAMTLANEERQVKAIA 175 (254)
T ss_dssp EECCSCCCCSSC---------C-----------------------------SHHHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred EEcCchhccCCC---------C-----------------------------cchHHHHHHHHHHHHHHHHhhccCcEEEE
Confidence 999986543211 0 157999999999999988764 899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc-CCCCCCceEEEe
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL-SNPGNTMRVINL 358 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~-~~~~~~~~iyNi 358 (762)
++||.|.++......................... .....+...+|+|++++.++.... . -..++++++
T Consensus 176 v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~r~~~p~dva~~v~~L~s~~~~~--~itG~~i~v 244 (254)
T 3kzv_A 176 VAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGL---------KENNQLLDSSVPATVYAKLALHGIPD--GVNGQYLSY 244 (254)
T ss_dssp EECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHH---------HTTC----CHHHHHHHHHHHHHCCCG--GGTTCEEET
T ss_pred EeCCcccchhHHHhhcccCccccCHHHHHHHHHH---------HhcCCcCCcccHHHHHHHHHhhcccC--CCCccEEEe
Confidence 9999998775443221110000011111111110 112346788999999999887653 2 114788888
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.++
T Consensus 245 dg~ 247 (254)
T 3kzv_A 245 NDP 247 (254)
T ss_dssp TCG
T ss_pred cCc
Confidence 765
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=168.62 Aligned_cols=229 Identities=13% Similarity=0.087 Sum_probs=153.0
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.+++|+||||||+|+||++++++|++. +.+|+++.|.. +++++..+ .+ .....++.++.+|
T Consensus 21 m~~~k~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~------~~~~~~~~-----~l------~~~~~~~~~~~~D 81 (279)
T 3sju_A 21 MSRPQTAFVTGVSSGIGLAVARTLAAR--GIAVYGCARDA------KNVSAAVD-----GL------RAAGHDVDGSSCD 81 (279)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HH------HTTTCCEEEEECC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HH------HhcCCcEEEEECC
Confidence 457899999999999999999999998 77899999863 22222211 11 1123678999999
Q ss_pred cCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH---c--CCcc
Q psy7542 138 VAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ---M--IHLQ 198 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~---~--~~lk 198 (762)
+++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++.. + .+..
T Consensus 82 v~d~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g 155 (279)
T 3sju_A 82 VTSTD------EVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWG 155 (279)
T ss_dssp TTCHH------HHHHHHHHHHHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCc
Confidence 99875 5555443 68999999997642 234667899999999999998865 1 2446
Q ss_pred EEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----C
Q psy7542 199 LFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----G 274 (762)
Q Consensus 199 ~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----g 274 (762)
++|++||..+..... ....|+.||+..+.+++..+.. |
T Consensus 156 ~iV~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~g 197 (279)
T 3sju_A 156 RIVNIASTGGKQGVM--------------------------------------YAAPYTASKHGVVGFTKSVGFELAKTG 197 (279)
T ss_dssp EEEEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHTGGGT
T ss_pred EEEEECChhhccCCC--------------------------------------CChhHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999986543211 0157999999988888877652 8
Q ss_pred CCEEEEeeeeeccCCCCCCC-CCCCCCC--CchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCC
Q psy7542 275 MPCMILRPSIIIPIWKDPLP-GWTDNIN--GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGN 351 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~p-GWidn~~--gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~ 351 (762)
+++.+++||.|.++...... ++. ... ........... ......+..++|+|++++.++...... .
T Consensus 198 i~vn~v~PG~v~T~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~p~~r~~~pedvA~~v~~L~s~~a~~--i 265 (279)
T 3sju_A 198 ITVNAVCPGYVETPMAERVREGYA-RHWGVTEQEVHERFNA---------KIPLGRYSTPEEVAGLVGYLVTDAAAS--I 265 (279)
T ss_dssp EEEEEEEESSBCSHHHHHHHHSCC-SSSCCCHHHHHHHHHT---------TCTTSSCBCHHHHHHHHHHHTSSGGGG--C
T ss_pred cEEEEEeeCcccchHHHHHHhhhh-hcccCChHHHHHHHHh---------cCCCCCCCCHHHHHHHHHHHhCccccC--c
Confidence 99999999988664321000 000 000 01112222211 122345788999999999988754321 1
Q ss_pred CceEEEecCC
Q psy7542 352 TMRVINLTAN 361 (762)
Q Consensus 352 ~~~iyNi~s~ 361 (762)
.++++++.+|
T Consensus 266 tG~~i~vdGG 275 (279)
T 3sju_A 266 TAQALNVCGG 275 (279)
T ss_dssp CSCEEEESTT
T ss_pred CCcEEEECCC
Confidence 4789999887
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-16 Score=164.57 Aligned_cols=222 Identities=13% Similarity=0.121 Sum_probs=154.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+|+||||+|+||++++++|++. +.+|+++.|.. ++++++.+ ....++.++.+|+
T Consensus 6 l~gk~~lVTGas~gIG~a~a~~l~~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~Dv 63 (255)
T 4eso_A 6 YQGKKAIVIGGTHGMGLATVRRLVEG--GAEVLLTGRNE------SNIARIRE--------------EFGPRVHALRSDI 63 (255)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH--------------HHGGGEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH--------------HhCCcceEEEccC
Confidence 57999999999999999999999998 77899999863 23333221 1125789999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYV 203 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~v 203 (762)
++++ +++.++ ..+|++||+||.... .+.++..+++|+.|+..+++++... ..-.++|++
T Consensus 64 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i 137 (255)
T 4eso_A 64 ADLN------EIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT 137 (255)
T ss_dssp TCHH------HHHHHHHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 9875 455443 378999999997642 2456778999999999999998753 223589999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~I 279 (762)
||..+..... ....|+.||+..+.+.+..+.. |+++..
T Consensus 138 sS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~ 179 (255)
T 4eso_A 138 SSVADEGGHP--------------------------------------GMSVYSASKAALVSFASVLAAELLPRGIRVNS 179 (255)
T ss_dssp CCGGGSSBCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEE
T ss_pred CChhhcCCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHHhhhCcEEEE
Confidence 9986543211 0157999999999998877663 899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
++||.|.++..... ++.+. ....+...... ......+..++|+|++++.++.. .. ...++++++.
T Consensus 180 v~PG~v~T~~~~~~-~~~~~--~~~~~~~~~~~---------~~p~~r~~~pedvA~~v~~L~s~-~~--~itG~~i~vd 244 (255)
T 4eso_A 180 VSPGFIDTPTKGVA-GITEA--ERAEFKTLGDN---------ITPMKRNGTADEVARAVLFLAFE-AT--FTTGAKLAVD 244 (255)
T ss_dssp EEECSBCCSSTTCT-TSCHH--HHHHHHHHHHH---------HSTTSSCBCHHHHHHHHHHHHHT-CT--TCCSCEEEES
T ss_pred EecCcccCcccccc-cCChh--hHHHHHHHHhc---------cCCCCCCcCHHHHHHHHHHHcCc-Cc--CccCCEEEEC
Confidence 99999977643210 00000 00001111111 11223467899999999988875 22 1257899999
Q ss_pred CC
Q psy7542 360 AN 361 (762)
Q Consensus 360 s~ 361 (762)
+|
T Consensus 245 GG 246 (255)
T 4eso_A 245 GG 246 (255)
T ss_dssp TT
T ss_pred CC
Confidence 88
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-16 Score=164.10 Aligned_cols=223 Identities=14% Similarity=0.093 Sum_probs=154.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|... ++++..+ .+.. ....++.++.+|+
T Consensus 18 l~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~------~~~~~~~-----~l~~-----~~~~~~~~~~~Dv 79 (266)
T 4egf_A 18 LDGKRALITGATKGIGADIARAFAAA--GARLVLSGRDVS------ELDAARR-----ALGE-----QFGTDVHTVAIDL 79 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHH------HHHHHHH-----HHHH-----HHCCCEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH-----HHHH-----hcCCcEEEEEecC
Confidence 57999999999999999999999998 778999999532 2222111 1111 1236799999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc----CCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM----IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~----~~lk~f 200 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+..+++++... +.-.++
T Consensus 80 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~i 153 (266)
T 4egf_A 80 AEPD------APAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAI 153 (266)
T ss_dssp TSTT------HHHHHHHHHHHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEE
Confidence 9987 5555443 78999999997642 2346678999999999999888542 123589
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... . ...|+.||+..+.+.+..+.. |++
T Consensus 154 v~isS~~~~~~~~----------~----------------------------~~~Y~asK~a~~~l~~~la~e~~~~gI~ 195 (266)
T 4egf_A 154 ITVASAAALAPLP----------D----------------------------HYAYCTSKAGLVMATKVLARELGPHGIR 195 (266)
T ss_dssp EEECCGGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEcchhhccCCC----------C----------------------------ChHHHHHHHHHHHHHHHHHHHHhhhCeE
Confidence 9999986543211 0 157999999999988877653 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+..++||.|.++.... .............. .....+..++|+|++++.++...... ..++++
T Consensus 196 vn~v~PG~v~T~~~~~-------~~~~~~~~~~~~~~---------~p~~r~~~p~dva~~v~~L~s~~~~~--itG~~i 257 (266)
T 4egf_A 196 ANSVCPTVVLTEMGQR-------VWGDEAKSAPMIAR---------IPLGRFAVPHEVSDAVVWLASDAASM--INGVDI 257 (266)
T ss_dssp EEEEEESCBCSHHHHH-------HTCSHHHHHHHHTT---------CTTSSCBCHHHHHHHHHHHHSGGGTT--CCSCEE
T ss_pred EEEEEeCCCcCchhhh-------hccChHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCchhcC--ccCcEE
Confidence 9999999886653110 01111111222111 12235678999999999988764431 257899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 258 ~vdGG 262 (266)
T 4egf_A 258 PVDGG 262 (266)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 99887
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-16 Score=162.95 Aligned_cols=222 Identities=10% Similarity=0.076 Sum_probs=148.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|.... ..+...+.+ .....++.++.+|+
T Consensus 6 l~~k~vlVTGas~GIG~aia~~la~~--G~~V~~~~~~~~~--~~~~~~~~~--------------~~~~~~~~~~~~Dv 67 (259)
T 3edm_A 6 FTNRTIVVAGAGRDIGRACAIRFAQE--GANVVLTYNGAAE--GAATAVAEI--------------EKLGRSALAIKADL 67 (259)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSSCH--HHHHHHHHH--------------HTTTSCCEEEECCT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCCHH--HHHHHHHHH--------------HhcCCceEEEEcCC
Confidence 57999999999999999999999999 7788887554321 111111111 11235789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~ 202 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++... ..-.++|+
T Consensus 68 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~ 141 (259)
T 3edm_A 68 TNAA------EVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVT 141 (259)
T ss_dssp TCHH------HHHHHHHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9875 5555554 78999999986521 1345778999999999999999764 11248999
Q ss_pred EeCCccc-CCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---CCCEE
Q psy7542 203 VSTAYCH-PKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---GMPCM 278 (762)
Q Consensus 203 vSSay~~-~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---glpv~ 278 (762)
+||..+. ... | ....|+.||+..+.+.+..+.. ++.+.
T Consensus 142 isS~~~~~~~~----------~----------------------------~~~~Y~asKaa~~~l~~~la~e~~~~I~vn 183 (259)
T 3edm_A 142 FSSQAGRDGGG----------P----------------------------GALAYATSKGAVMTFTRGLAKEVGPKIRVN 183 (259)
T ss_dssp ECCHHHHHCCS----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred EcCHHhccCCC----------C----------------------------CcHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Confidence 9998553 111 0 0157999999999999887764 59999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
.+.||.|..+..... ..+ .... ..........+..++|+|++++.++..... ...++++++
T Consensus 184 ~v~PG~v~T~~~~~~-------~~~-~~~~---------~~~~~~p~~r~~~pedva~~v~~L~s~~~~--~itG~~i~v 244 (259)
T 3edm_A 184 AVCPGMISTTFHDTF-------TKP-EVRE---------RVAGATSLKREGSSEDVAGLVAFLASDDAA--YVTGACYDI 244 (259)
T ss_dssp EEEECCBCC---------------------------------------CCBCHHHHHHHHHHHHSGGGT--TCCSCEEEE
T ss_pred EEEECCCcCcccccc-------cCh-HHHH---------HHHhcCCCCCCcCHHHHHHHHHHHcCcccc--CccCCEEEE
Confidence 999998866532211 000 0000 011112234577899999999998876543 125789999
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.++
T Consensus 245 dGg 247 (259)
T 3edm_A 245 NGG 247 (259)
T ss_dssp SBC
T ss_pred CCC
Confidence 887
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=172.16 Aligned_cols=220 Identities=18% Similarity=0.151 Sum_probs=138.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||||+||.+++++|++. +.+|++..|... +++++.+ .+... ....++.++.+|+
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~--G~~Vv~~~r~~~------~~~~~~~-----~l~~~----~~~~~~~~~~~Dl 68 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQ--GCKVAIADIRQD------SIDKALA-----TLEAE----GSGPEVMGVQLDV 68 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHT--TCEEEEEESCHH------HHHHHHH-----HHHHH----TCGGGEEEEECCT
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHC--CCEEEEEECCHH------HHHHHHH-----HHHhc----CCCCeEEEEECCC
Confidence 47899999999999999999999998 778999999642 2222211 11111 1123789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHcC---------
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQMI--------- 195 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~~--------- 195 (762)
++++ ++..+++ .+|+|||+||.... .+.++..+++|+.|+.++++++...-
T Consensus 69 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~ 142 (319)
T 3ioy_A 69 ASRE------GFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQ 142 (319)
T ss_dssp TCHH------HHHHHHHHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCC
Confidence 9865 5555543 67999999997532 24566789999999999999886531
Q ss_pred CccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhH----HHHHHHHHHH
Q psy7542 196 HLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKC----LCEGVVTEYM 271 (762)
Q Consensus 196 ~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~----~aE~lv~~~~ 271 (762)
+-.++|++||..+..... ....|+.||+ ++|.+..++.
T Consensus 143 ~~g~iV~isS~a~~~~~~--------------------------------------~~~~Y~aSKaal~~~~~~la~e~~ 184 (319)
T 3ioy_A 143 KGGHVVNTASMAAFLAAG--------------------------------------SPGIYNTTKFAVRGLSESLHYSLL 184 (319)
T ss_dssp CCCEEEEECCGGGTCCCS--------------------------------------SSHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CCcEEEEecccccccCCC--------------------------------------CCHHHHHHHHHHHHHHHHHHHHhh
Confidence 235799999986643211 1157999999 5555555554
Q ss_pred HcCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCC-CcccccccHHHHHHHHHHHhhccc
Q psy7542 272 EAGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDY-STCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 272 ~~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~-~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
..|+.+++++||.|.++...+.. ..+ ..+............... ......++++++|++++.++....
T Consensus 185 ~~gi~v~~v~PG~v~T~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~vA~~~~~al~~~~ 253 (319)
T 3ioy_A 185 KYEIGVSVLCPGLVKSYIYASDD------IRP-DALKGEVKPVDKTAVERLAGVHEFGMEPDVIGARVIEAMKANR 253 (319)
T ss_dssp GGTCEEEEECCCCBC------------------------------------CCGGGSSBCHHHHHHHHHHHHHTTC
T ss_pred hcCCEEEEEEcCeEccCcccccc------cCc-hhhcccccchhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHcCC
Confidence 45999999999999765432110 000 000000000000001111 111123899999999999988653
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.1e-16 Score=160.64 Aligned_cols=214 Identities=10% Similarity=0.004 Sum_probs=145.9
Q ss_pred hhccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 56 SATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 56 ~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
...++||+||||||||+||++++++|++. +.+|+++.|.. +.+++ . .++.++
T Consensus 14 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~--G~~V~~~~r~~------~~~~~------------------~-~~~~~~- 65 (249)
T 1o5i_A 14 ELGIRDKGVLVLAASRGIGRAVADVLSQE--GAEVTICARNE------ELLKR------------------S-GHRYVV- 65 (249)
T ss_dssp --CCTTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHH------------------T-CSEEEE-
T ss_pred HhccCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEcCCH------HHHHh------------------h-CCeEEE-
Confidence 34568999999999999999999999998 67899999863 11111 1 256677
Q ss_pred eecCCCCCCCCHHHHHhhcCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHH----HHcCCccEEEEEe
Q psy7542 136 GDVAVPDLGISAEDRQMLSETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLS----KQMIHLQLFVYVS 204 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA----~~~~~lk~fV~vS 204 (762)
+|+ ..+ .+.+.+.+.++|+|||+||.... .+.++..+++|+.|+.++.+.+ ++. +..++|++|
T Consensus 66 ~D~-~~~----~~~~~~~~~~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~is 139 (249)
T 1o5i_A 66 CDL-RKD----LDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEK-GWGRIVAIT 139 (249)
T ss_dssp CCT-TTC----HHHHHHHSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEC
T ss_pred eeH-HHH----HHHHHHHhcCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEEc
Confidence 998 222 23343444589999999996542 2346678999999987766554 343 567999999
Q ss_pred CCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEE
Q psy7542 205 TAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMIL 280 (762)
Q Consensus 205 Say~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~Iv 280 (762)
|..+..... . ...|+.||+..+.+.+..+. .|++++++
T Consensus 140 S~~~~~~~~----------~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v 181 (249)
T 1o5i_A 140 SFSVISPIE----------N----------------------------LYTSNSARMALTGFLKTLSFEVAPYGITVNCV 181 (249)
T ss_dssp CGGGTSCCT----------T----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred chHhcCCCC----------C----------------------------CchHHHHHHHHHHHHHHHHHHhhhcCeEEEEE
Confidence 986653211 0 15799999999998887665 28999999
Q ss_pred eeeeeccCCCCCCCCCCCCCCCchHHHH-HHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 281 RPSIIIPIWKDPLPGWTDNINGPTGLLI-GAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 281 RPs~V~G~~~eP~pGWidn~~gp~~li~-~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
|||.|.++... .. .+ .... ..... .....++.++|+|++++.++..... ...++++++.
T Consensus 182 ~Pg~v~t~~~~-------~~-~~-~~~~~~~~~~---------~p~~~~~~~~dvA~~i~~l~s~~~~--~~tG~~~~vd 241 (249)
T 1o5i_A 182 APGWTETERVK-------EL-LS-EEKKKQVESQ---------IPMRRMAKPEEIASVVAFLCSEKAS--YLTGQTIVVD 241 (249)
T ss_dssp EECSBCCTTHH-------HH-SC-HHHHHHHHTT---------STTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEES
T ss_pred eeCCCccCccc-------cc-ch-hhHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCcccc--CCCCCEEEEC
Confidence 99998776321 00 00 1111 11111 1123578999999999988865432 1147899998
Q ss_pred CC
Q psy7542 360 AN 361 (762)
Q Consensus 360 s~ 361 (762)
++
T Consensus 242 gG 243 (249)
T 1o5i_A 242 GG 243 (249)
T ss_dssp TT
T ss_pred CC
Confidence 87
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-16 Score=163.83 Aligned_cols=230 Identities=14% Similarity=0.063 Sum_probs=151.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ .+... ....++.++.+|+
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~~~~~----~~~~~~~~~~~D~ 73 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAE--GAKLSLVDVSS------EGLEASKA-----AVLET----APDAEVLTTVADV 73 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHHHH----CTTCCEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HHHhh----cCCceEEEEEccC
Confidence 57899999999999999999999998 77899999864 22222211 11111 0135788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
++++ +++++++ .+|+|||+||.... .+.++..+++|+.|+..+++.+... .+..++
T Consensus 74 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~i 147 (267)
T 1iy8_A 74 SDEA------QVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMV 147 (267)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEE
Confidence 9865 5655554 68999999997543 1446778999999988776665321 245799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... ....|+.||+..+.+.+..+. .|++
T Consensus 148 v~isS~~~~~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~ 189 (267)
T 1iy8_A 148 VNTASVGGIRGIG--------------------------------------NQSGYAAAKHGVVGLTRNSAVEYGRYGIR 189 (267)
T ss_dssp EEECCGGGTSBCS--------------------------------------SBHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred EEEcchhhccCCC--------------------------------------CCccHHHHHHHHHHHHHHHHHHHHhcCeE
Confidence 9999986543210 015799999999998887665 2899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+++++||.|.++...... .................. .....+...+|+|++++.++...... ..++++
T Consensus 190 v~~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~~~~~~---------~p~~r~~~~~dvA~~v~~l~s~~~~~--~tG~~i 257 (267)
T 1iy8_A 190 INAIAPGAIWTPMVENSM-KQLDPENPRKAAEEFIQV---------NPSKRYGEAPEIAAVVAFLLSDDASY--VNATVV 257 (267)
T ss_dssp EEEEEECSBCSHHHHHHH-HHHCTTCHHHHHHHHHTT---------CTTCSCBCHHHHHHHHHHHTSGGGTT--CCSCEE
T ss_pred EEEEEeCCCcCcchhccc-cccChhhhhhHHHHHhcc---------CCCCCCcCHHHHHHHHHHHcCccccC--CCCCEE
Confidence 999999988765211000 000000000000011111 11234789999999999988654321 147899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 258 ~vdGG 262 (267)
T 1iy8_A 258 PIDGG 262 (267)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 99877
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=167.96 Aligned_cols=222 Identities=10% Similarity=0.053 Sum_probs=151.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|+||||+|+||++++++|++. +.+|+++.|... +++++... .+ .....++.++.+|+
T Consensus 23 ~~~k~vlITGas~gIG~~~a~~l~~~--G~~v~~~~~~~~-----~~~~~~~~-----~~------~~~~~~~~~~~~Dl 84 (269)
T 3gk3_A 23 QAKRVAFVTGGMGGLGAAISRRLHDA--GMAVAVSHSERN-----DHVSTWLM-----HE------RDAGRDFKAYAVDV 84 (269)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHTT--TCEEEEEECSCH-----HHHHHHHH-----HH------HTTTCCCEEEECCT
T ss_pred hcCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCch-----HHHHHHHH-----HH------HhcCCceEEEEecC
Confidence 57899999999999999999999998 778888885432 12221110 00 12236799999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++.+... .+..++|
T Consensus 85 ~~~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv 158 (269)
T 3gk3_A 85 ADFE------SCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIV 158 (269)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9865 5555443 79999999997642 2456778999999999999887541 2457899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... ....|+.||+..+.+++..+. .|+++
T Consensus 159 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~v 200 (269)
T 3gk3_A 159 NIGSVNGSRGAF--------------------------------------GQANYASAKAGIHGFTKTLALETAKRGITV 200 (269)
T ss_dssp EECCHHHHHCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EeCChhhccCCC--------------------------------------CcchHHHHHHHHHHHHHHHHHHhhhcCCEE
Confidence 999975432110 015799999988888876655 28999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
.+++||.|..+.....+. .... . ..........+..++|+|++++.++..... ...+++++
T Consensus 201 ~~v~PG~v~T~~~~~~~~---------~~~~----~----~~~~~~~~~~~~~p~dvA~~v~~L~s~~~~--~itG~~i~ 261 (269)
T 3gk3_A 201 NTVSPGYLATAMVEAVPQ---------DVLE----A----KILPQIPVGRLGRPDEVAALIAFLCSDDAG--FVTGADLA 261 (269)
T ss_dssp EEEEECSBCCTTTTC--------------------C----CSGGGCTTSSCBCHHHHHHHHHHHTSTTCT--TCCSCEEE
T ss_pred EEEecCcccchhhhhhch---------hHHH----H----HhhhcCCcCCccCHHHHHHHHHHHhCCCcC--CeeCcEEE
Confidence 999999887654321110 0000 0 001112234567899999999998876432 12578999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 262 vdgG 265 (269)
T 3gk3_A 262 INGG 265 (269)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9987
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-16 Score=164.70 Aligned_cols=224 Identities=16% Similarity=0.064 Sum_probs=156.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ .+ .....++.++.+|+
T Consensus 6 l~gk~vlVTGas~GIG~aia~~la~~--G~~V~~~~r~~------~~~~~~~~-----~~------~~~~~~~~~~~~Dv 66 (280)
T 3tox_A 6 LEGKIAIVTGASSGIGRAAALLFARE--GAKVVVTARNG------NALAELTD-----EI------AGGGGEAAALAGDV 66 (280)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEECCSCH------HHHHHHHH-----HH------TTTTCCEEECCCCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HH------HhcCCcEEEEECCC
Confidence 57899999999999999999999998 77889988863 22322211 01 12236789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+-.++
T Consensus 67 ~~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~i 140 (280)
T 3tox_A 67 GDEA------LHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSL 140 (280)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEE
Confidence 9875 5555544 78999999996532 2456778999999999999988642 234699
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+.... .| ....|+.||+..+.+++..+.. |++
T Consensus 141 v~isS~~~~~~~---------~~----------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gIr 183 (280)
T 3tox_A 141 TFTSSFVGHTAG---------FA----------------------------GVAPYAASKAGLIGLVQALAVELGARGIR 183 (280)
T ss_dssp EEECCSBTTTBC---------CT----------------------------TCHHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred EEEcChhhCcCC---------CC----------------------------CchhHHHHHHHHHHHHHHHHHHhhhcCeE
Confidence 999998654110 00 0157999999999998877653 899
Q ss_pred EEEEeeeeeccCCCCC-CCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 277 CMILRPSIIIPIWKDP-LPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP-~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
+.+++||.|.++.... .++ ............ .....+..++|+|++++.++...... ..+++
T Consensus 184 vn~v~PG~v~T~~~~~~~~~------~~~~~~~~~~~~---------~p~~r~~~pedvA~~v~~L~s~~a~~--itG~~ 246 (280)
T 3tox_A 184 VNALLPGGTDTPANFANLPG------AAPETRGFVEGL---------HALKRIARPEEIAEAALYLASDGASF--VTGAA 246 (280)
T ss_dssp EEEEEECSBSSTTSGGGSTT------CCTHHHHHHHTT---------STTSSCBCHHHHHHHHHHHHSGGGTT--CCSCE
T ss_pred EEEEEECCCCCchhhhhccc------cCHHHHHHHhcc---------CccCCCcCHHHHHHHHHHHhCccccC--CcCcE
Confidence 9999999998764321 100 011111111111 12245788999999999988765431 25789
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+++.+|
T Consensus 247 i~vdGG 252 (280)
T 3tox_A 247 LLADGG 252 (280)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 999988
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.9e-16 Score=164.43 Aligned_cols=217 Identities=12% Similarity=0.068 Sum_probs=142.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ .+ .....++.++.+|+
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~l------~~~~~~~~~~~~Dv 89 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARR--GARLVLSDVDQ------PALEQAVN-----GL------RGQGFDAHGVVCDV 89 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HH------HHTTCCEEEEECCT
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HH------HhcCCceEEEEccC
Confidence 57899999999999999999999998 77899999863 22322211 11 11235789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH----cCCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ----MIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~----~~~lk~f 200 (762)
++++ +++++++ .+|+|||+||.... .+.++..+++|+.|+.++++++.. .+...++
T Consensus 90 ~d~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~i 163 (301)
T 3tjr_A 90 RHLD------EMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHI 163 (301)
T ss_dssp TCHH------HHHHHHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEE
T ss_pred CCHH------HHHHHHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEE
Confidence 9866 5555544 78999999997532 244667899999999999998754 2224689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... ....|+.||+..+.+.+..+. .|+.
T Consensus 164 v~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~ 205 (301)
T 3tjr_A 164 AFTASFAGLVPNA--------------------------------------GLGTYGVAKYGVVGLAETLAREVKPNGIG 205 (301)
T ss_dssp EEECCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEeCchhhcCCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHhcccCcE
Confidence 9999986643211 015799999988888877665 2899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
+++++||.|..+.... .......... .........+......++++++|||++++.++....
T Consensus 206 v~~v~PG~v~T~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pedvA~~i~~~l~~~~ 267 (301)
T 3tjr_A 206 VSVLCPMVVETKLVSN-------SERIRGADYG-MSATPEGAFGPLPTQDESVSADDVARLTADAILANR 267 (301)
T ss_dssp EEEECCSCCCSSHHHH-------HHHHC-----------------------CCCHHHHHHHHHHHHHHTC
T ss_pred EEEEECCccccccccc-------cccccchhhc-cccChhhhccccccccCCCCHHHHHHHHHHHHhcCC
Confidence 9999999875542100 0000000000 000011111222344578999999999999998653
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.8e-16 Score=162.74 Aligned_cols=221 Identities=14% Similarity=0.052 Sum_probs=150.7
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.+.+|+||||||+|+||++++++|++. +.+|+++.+... +++++..+ .+ .....++.++.+|
T Consensus 23 ~l~~k~vlVTGas~gIG~~la~~l~~~--G~~v~i~~~r~~-----~~~~~~~~-----~l------~~~~~~~~~~~~D 84 (267)
T 4iiu_A 23 NAMSRSVLVTGASKGIGRAIARQLAAD--GFNIGVHYHRDA-----AGAQETLN-----AI------VANGGNGRLLSFD 84 (267)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCH-----HHHHHHHH-----HH------HHTTCCEEEEECC
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCch-----HHHHHHHH-----HH------HhcCCceEEEEec
Confidence 357899999999999999999999999 777777665432 12222111 11 1123678999999
Q ss_pred cCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH----cCCccE
Q psy7542 138 VAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ----MIHLQL 199 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~----~~~lk~ 199 (762)
+++++ +++++++ .+|+|||+||.... .+.++..+++|+.|+.++++.+.. ..+..+
T Consensus 85 l~~~~------~~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~ 158 (267)
T 4iiu_A 85 VANRE------QCREVLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGR 158 (267)
T ss_dssp TTCHH------HHHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEE
T ss_pred CCCHH------HHHHHHHHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcE
Confidence 99865 5555544 78999999997642 245677899999999999998741 124579
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 275 (762)
+|++||..+..... ....|+.||+..+.+.+..+. .|+
T Consensus 159 iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi 200 (267)
T 4iiu_A 159 IITLSSVSGVMGNR--------------------------------------GQVNYSAAKAGIIGATKALAIELAKRKI 200 (267)
T ss_dssp EEEECCHHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred EEEEcchHhccCCC--------------------------------------CCchhHHHHHHHHHHHHHHHHHHhhcCe
Confidence 99999975432110 015799999977777766554 389
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
++.+++||.|.++.... ............ ....+..++|+|++++.++..... ...+++
T Consensus 201 ~v~~v~PG~v~t~~~~~----------~~~~~~~~~~~~---------p~~~~~~~edva~~~~~L~s~~~~--~itG~~ 259 (267)
T 4iiu_A 201 TVNCIAPGLIDTGMIEM----------EESALKEAMSMI---------PMKRMGQAEEVAGLASYLMSDIAG--YVTRQV 259 (267)
T ss_dssp EEEEEEECSBCSTTCCC----------CHHHHHHHHHTC---------TTCSCBCHHHHHHHHHHHHSGGGT--TCCSCE
T ss_pred EEEEEEEeeecCCcccc----------cHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCCccc--CccCCE
Confidence 99999999997764321 112222222211 123477899999999988875433 125789
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+++.+|
T Consensus 260 i~vdGG 265 (267)
T 4iiu_A 260 ISINGG 265 (267)
T ss_dssp EEESTT
T ss_pred EEeCCC
Confidence 999876
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=166.44 Aligned_cols=197 Identities=17% Similarity=0.100 Sum_probs=141.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ .++ ....++.++.+|+
T Consensus 29 l~~k~vlITGasggIG~~la~~L~~~--G~~V~~~~r~~------~~~~~~~~-----~l~------~~~~~~~~~~~Dl 89 (272)
T 1yb1_A 29 VTGEIVLITGAGHGIGRLTAYEFAKL--KSKLVLWDINK------HGLEETAA-----KCK------GLGAKVHTFVVDC 89 (272)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHH------HTTCCEEEEECCT
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEEcCH------HHHHHHHH-----HHH------hcCCeEEEEEeeC
Confidence 57899999999999999999999998 67899999863 22222211 111 1135789999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++.++ .++|+|||+||..... +.+...+++|+.|+.++++.+... .+..+||
T Consensus 90 ~~~~------~v~~~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv 163 (272)
T 1yb1_A 90 SNRE------DIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIV 163 (272)
T ss_dssp TCHH------HHHHHHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9865 455444 3789999999976431 345678999999988887777532 2567999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-------C
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-------G 274 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-------g 274 (762)
++||..+..... + ...|+.||+..|.+++.++.. |
T Consensus 164 ~isS~~~~~~~~------------~--------------------------~~~Y~~sK~a~~~l~~~la~e~~~~~~~g 205 (272)
T 1yb1_A 164 TVASAAGHVSVP------------F--------------------------LLAYCSSKFAAVGFHKTLTDELAALQITG 205 (272)
T ss_dssp EECCCC-CCCHH------------H--------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred EEechhhcCCCC------------C--------------------------chhHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999986543210 0 057999999999988776542 7
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
++++++|||.|.++... . .. .....++.++|+|++++.++....
T Consensus 206 i~v~~v~Pg~v~t~~~~-------~-----~~----------------~~~~~~~~~~dva~~i~~~~~~~~ 249 (272)
T 1yb1_A 206 VKTTCLCPNFVNTGFIK-------N-----PS----------------TSLGPTLEPEEVVNRLMHGILTEQ 249 (272)
T ss_dssp EEEEEEEETHHHHCSTT-------C-----TH----------------HHHCCCCCHHHHHHHHHHHHHTTC
T ss_pred eEEEEEeCCcccCCccc-------c-----cc----------------ccccCCCCHHHHHHHHHHHHHcCC
Confidence 99999999988765311 0 00 012347899999999999987654
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-16 Score=162.98 Aligned_cols=216 Identities=16% Similarity=0.124 Sum_probs=153.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|+||||||+||++++++|++. +.+|+++.|.. ++++++.+ ....++.++.+|+
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~D~ 61 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFARE--GASLVAVDREE------RLLAEAVA--------------ALEAEAIAVVADV 61 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH--------------TCCSSEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH--------------HhcCceEEEEcCC
Confidence 47899999999999999999999998 67889999863 23333221 1125788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYV 203 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~v 203 (762)
++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... ++..++|++
T Consensus 62 ~~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 135 (263)
T 2a4k_A 62 SDPK------AVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLT 135 (263)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 9865 5555543 57999999997542 2345678999999999999999764 123589999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~I 279 (762)
||..+. ... . ...|+.||+..+.+.+..+. .|+++++
T Consensus 136 sS~~~~-~~~-------------~-------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~ 176 (263)
T 2a4k_A 136 GSVAGL-GAF-------------G-------------------------LAHYAAGKLGVVGLARTLALELARKGVRVNV 176 (263)
T ss_dssp CCCTTC-CHH-------------H-------------------------HHHHHHCSSHHHHHHHHHHHHHTTTTCEEEE
T ss_pred ecchhc-CCC-------------C-------------------------cHHHHHHHHHHHHHHHHHHHHhhhhCcEEEE
Confidence 998764 110 0 05799999988888777654 3899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
++||.|.++.... . +........... ....++..+|+|++++.++...... ..++++++.
T Consensus 177 v~PG~v~t~~~~~-------~--~~~~~~~~~~~~---------p~~~~~~p~dvA~~v~~l~s~~~~~--~tG~~i~vd 236 (263)
T 2a4k_A 177 LLPGLIQTPMTAG-------L--PPWAWEQEVGAS---------PLGRAGRPEEVAQAALFLLSEESAY--ITGQALYVD 236 (263)
T ss_dssp EEECSBCCGGGTT-------S--CHHHHHHHHHTS---------TTCSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEES
T ss_pred EEeCcCcCchhhh-------c--CHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCccccC--CcCCEEEEC
Confidence 9999997764221 1 111222221111 1124788999999999988754321 247899998
Q ss_pred CC
Q psy7542 360 AN 361 (762)
Q Consensus 360 s~ 361 (762)
++
T Consensus 237 gG 238 (263)
T 2a4k_A 237 GG 238 (263)
T ss_dssp TT
T ss_pred CC
Confidence 87
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2e-16 Score=167.23 Aligned_cols=233 Identities=16% Similarity=0.074 Sum_probs=154.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.... ..+.+.+. + .....++.++.+|+
T Consensus 27 ~~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~--~~~~~~~~--------~------~~~~~~~~~~~~D~ 88 (283)
T 1g0o_A 27 LEGKVALVTGAGRGIGREMAMELGRR--GCKVIVNYANSTE--SAEEVVAA--------I------KKNGSDAACVKANV 88 (283)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHH--HHHHHHHH--------H------HHTTCCEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCchH--HHHHHHHH--------H------HHhCCCeEEEEcCC
Confidence 57899999999999999999999998 7788999986421 11111111 1 11235788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYV 203 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~v 203 (762)
++++ ++..++ ..+|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++
T Consensus 89 ~~~~------~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 162 (283)
T 1g0o_A 89 GVVE------DIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM 162 (283)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEE
Confidence 9865 444443 368999999997643 2456778999999999999999764 345799999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~I 279 (762)
||..+..... + ....|+.||+..|.+++..+. .|+++++
T Consensus 163 sS~~~~~~~~---------~----------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~ 205 (283)
T 1g0o_A 163 GSITGQAKAV---------P----------------------------KHAVYSGSKGAIETFARCMAIDMADKKITVNV 205 (283)
T ss_dssp CCGGGTCSSC---------S----------------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred echhhccCCC---------C----------------------------CCcchHHHHHHHHHHHHHHHHHhcccCeEEEE
Confidence 9986543210 0 015799999999999887764 2899999
Q ss_pred EeeeeeccCCCCCC-CCCCCCC-CCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 280 LRPSIIIPIWKDPL-PGWTDNI-NGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 280 vRPs~V~G~~~eP~-pGWidn~-~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
++||.|.++..... ..+.... .........+.... ......+...+|+|++++.++..... ...+++++
T Consensus 206 v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~p~~r~~~p~dvA~~v~~l~s~~~~--~itG~~i~ 276 (283)
T 1g0o_A 206 VAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQ-------WSPLRRVGLPIDIARVVCFLASNDGG--WVTGKVIG 276 (283)
T ss_dssp EEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHH-------SCTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EecCcccchhhhhhhhhccccccccCHHHHHHHHhhc-------CCCCCCCcCHHHHHHHHHHHhCcccc--CcCCCEEE
Confidence 99999876531100 0000000 00011111111100 01123477899999999998875432 12478899
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 277 vdgG 280 (283)
T 1g0o_A 277 IDGG 280 (283)
T ss_dssp ESTT
T ss_pred eCCC
Confidence 8876
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.7e-16 Score=166.08 Aligned_cols=221 Identities=17% Similarity=0.091 Sum_probs=155.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|.... . +.+.+.+ .....++.++.+|+
T Consensus 30 l~gk~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~--~-~~~~~~~--------------~~~~~~~~~~~~Dl 90 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVALAYAEA--GAQVAVAARHSDA--L-QVVADEI--------------AGVGGKALPIRCDV 90 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESSGGG--G-HHHHHHH--------------HHTTCCCEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCHHH--H-HHHHHHH--------------HhcCCeEEEEEcCC
Confidence 57999999999999999999999998 7789999996432 1 2222111 11235789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc----CCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM----IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~----~~lk~f 200 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+..+++++... +.-.++
T Consensus 91 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~i 164 (276)
T 3r1i_A 91 TQPD------QVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTI 164 (276)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 9876 5666554 78999999997643 2456678899999999999988642 112689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... +.+ ...|+.||+..+.+++..+.. |++
T Consensus 165 v~isS~~~~~~~~-------~~~-----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gIr 208 (276)
T 3r1i_A 165 ITTASMSGHIINI-------PQQ-----------------------------VSHYCTSKAAVVHLTKAMAVELAPHQIR 208 (276)
T ss_dssp EEECCGGGTSCCC-------SSC-----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEECchHhcccCC-------CCC-----------------------------cchHHHHHHHHHHHHHHHHHHHhhcCcE
Confidence 9999986543211 001 157999999999998887653 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
++.++||.|..+...+. .......... .....+...+|+|++++.++...... ..++++
T Consensus 209 vn~v~PG~v~T~~~~~~----------~~~~~~~~~~---------~p~~r~~~pedvA~~v~fL~s~~~~~--itG~~i 267 (276)
T 3r1i_A 209 VNSVSPGYIRTELVEPL----------ADYHALWEPK---------IPLGRMGRPEELTGLYLYLASAASSY--MTGSDI 267 (276)
T ss_dssp EEEEEECCBCSTTTGGG----------GGGHHHHGGG---------STTSSCBCGGGSHHHHHHHHSGGGTT--CCSCEE
T ss_pred EEEEeeCCCcCCccccc----------hHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCccccC--ccCcEE
Confidence 99999999876643211 1111111111 11234678899999999988754431 257899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 268 ~vdGG 272 (276)
T 3r1i_A 268 VIDGG 272 (276)
T ss_dssp EESTT
T ss_pred EECcC
Confidence 99877
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-16 Score=162.67 Aligned_cols=225 Identities=15% Similarity=0.077 Sum_probs=152.5
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
..+++|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ .+.. ....++.++.+
T Consensus 17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~l~~-----~~~~~~~~~~~ 78 (267)
T 1vl8_A 17 FDLRGRVALVTGGSRGLGFGIAQGLAEA--GCSVVVASRNL------EEASEAAQ-----KLTE-----KYGVETMAFRC 78 (267)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHHH-----HHCCCEEEEEC
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HHHH-----hcCCeEEEEEc
Confidence 3468999999999999999999999998 67899999863 22222211 1100 01246888999
Q ss_pred ecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccE
Q psy7542 137 DVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQL 199 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~ 199 (762)
|+++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+..+
T Consensus 79 Dl~~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~ 152 (267)
T 1vl8_A 79 DVSNYE------EVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPS 152 (267)
T ss_dssp CTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCE
T ss_pred CCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcE
Confidence 999865 5555544 78999999997542 1346678999999999999887531 24579
Q ss_pred EEEEeCCc-ccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----C
Q psy7542 200 FVYVSTAY-CHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----G 274 (762)
Q Consensus 200 fV~vSSay-~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----g 274 (762)
+|++||.. +.... |. ...|+.||+..|.+++..+.. |
T Consensus 153 iv~isS~~~~~~~~----------~~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~g 194 (267)
T 1vl8_A 153 IINIGSLTVEEVTM----------PN----------------------------ISAYAASKGGVASLTKALAKEWGRYG 194 (267)
T ss_dssp EEEECCGGGTCCCS----------SS----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEEECCcchhccCC----------CC----------------------------ChhHHHHHHHHHHHHHHHHHHhcccC
Confidence 99999986 32211 00 157999999999999877652 8
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
+++++++||.|.++... ................ ....++..+|+|++++.++...... ..++
T Consensus 195 i~v~~v~PG~v~T~~~~-------~~~~~~~~~~~~~~~~---------p~~~~~~p~dvA~~v~~l~s~~~~~--itG~ 256 (267)
T 1vl8_A 195 IRVNVIAPGWYRTKMTE-------AVFSDPEKLDYMLKRI---------PLGRTGVPEDLKGVAVFLASEEAKY--VTGQ 256 (267)
T ss_dssp CEEEEEEECCBCSTTTH-------HHHTCHHHHHHHHHTC---------TTSSCBCGGGGHHHHHHHHSGGGTT--CCSC
T ss_pred eEEEEEEeccCcccccc-------ccccChHHHHHHHhhC---------CCCCCcCHHHHHHHHHHHcCccccC--CcCC
Confidence 99999999988654211 0000011111111111 1124778999999999988654321 1478
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
++++.++
T Consensus 257 ~i~vdGG 263 (267)
T 1vl8_A 257 IIFVDGG 263 (267)
T ss_dssp EEEESTT
T ss_pred eEEECCC
Confidence 8888876
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-16 Score=166.20 Aligned_cols=228 Identities=14% Similarity=0.132 Sum_probs=153.1
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.+++|+||||||||+||++++++|++. +.+|+++.|... +++++. +.+.... .+....++.++.+|
T Consensus 15 ~l~~k~vlVTGasggIG~~la~~l~~~--G~~V~~~~r~~~------~~~~~~-----~~l~~~~-~~~~~~~~~~~~~D 80 (303)
T 1yxm_A 15 LLQGQVAIVTGGATGIGKAIVKELLEL--GSNVVIASRKLE------RLKSAA-----DELQANL-PPTKQARVIPIQCN 80 (303)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHH------HHHHHH-----HHHHHTS-CTTCCCCEEEEECC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHH-----HHHHhhc-cccCCccEEEEecC
Confidence 468899999999999999999999998 678999998632 222211 1111100 00123578999999
Q ss_pred cCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 138 VAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
+++++ +++.+++ .+|+|||+||.... .+.+...+++|+.|+.++++++... .+..++
T Consensus 81 ~~~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~i 154 (303)
T 1yxm_A 81 IRNEE------EVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSI 154 (303)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeE
Confidence 99865 5655554 58999999996432 1345678999999999999998652 124689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||.. ... .|. ...|+.+|+..+.+.+..+.. |++
T Consensus 155 v~isS~~-~~~----------~~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~ 195 (303)
T 1yxm_A 155 VNIIVPT-KAG----------FPL----------------------------AVHSGAARAGVYNLTKSLALEWACSGIR 195 (303)
T ss_dssp EEECCCC-TTC----------CTT----------------------------CHHHHHHHHHHHHHHHHHHHHTGGGTEE
T ss_pred EEEEeec-ccC----------CCc----------------------------chhhHHHHHHHHHHHHHHHHHhcccCeE
Confidence 9999985 211 011 147999999999888877653 899
Q ss_pred EEEEeeeeeccCCC-CCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 277 CMILRPSIIIPIWK-DPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 277 v~IvRPs~V~G~~~-eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
++++|||.|+++.. .....+ ...+....... .....++.++|+|++++.++..... ...+++
T Consensus 196 v~~v~Pg~v~t~~~~~~~~~~------~~~~~~~~~~~---------~p~~~~~~~~dvA~~i~~l~~~~~~--~~~G~~ 258 (303)
T 1yxm_A 196 INCVAPGVIYSQTAVENYGSW------GQSFFEGSFQK---------IPAKRIGVPEEVSSVVCFLLSPAAS--FITGQS 258 (303)
T ss_dssp EEEEEECSBCCTGGGTTSGGG------GGGGGTTGGGG---------STTSSCBCTHHHHHHHHHHHSGGGT--TCCSCE
T ss_pred EEEEecCCcccchhhhhcccc------chHHHHHHHhc---------CcccCCCCHHHHHHHHHHHhCcccc--cCCCcE
Confidence 99999999998731 100000 00111111110 1113478899999999998865432 114789
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+++.++
T Consensus 259 ~~v~gG 264 (303)
T 1yxm_A 259 VDVDGG 264 (303)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 999887
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-15 Score=161.76 Aligned_cols=237 Identities=16% Similarity=0.120 Sum_probs=158.2
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCc------chHHHHHHHhcChhHHHHHhhhhcccccCC
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNK------NSRERLEEIFQSPLYEALKKEQSESAIFEK 130 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~------~~~eRl~~ll~~~~f~~l~~~~~~~~~~~k 130 (762)
..++||+||||||+|+||++++++|++. +.+|+++.|.+... ...+++++..+ .+ .....+
T Consensus 24 ~~l~gk~~lVTGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~ 90 (299)
T 3t7c_A 24 GKVEGKVAFITGAARGQGRSHAITLARE--GADIIAIDVCKQLDGVKLPMSTPDDLAETVR-----QV------EALGRR 90 (299)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECCSCCTTCCSCCCCHHHHHHHHH-----HH------HHTTCC
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEecccccccccccccCHHHHHHHHH-----HH------HhcCCc
Confidence 3468999999999999999999999998 78889998874211 11233433221 11 122368
Q ss_pred eEEEEeecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc-
Q psy7542 131 VIPINGDVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM- 194 (762)
Q Consensus 131 V~~V~GDl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~- 194 (762)
+.++.+|+++++ +++++++ .+|++||+||.... .+.++..+++|+.|+..+++++...
T Consensus 91 ~~~~~~Dv~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~ 164 (299)
T 3t7c_A 91 IIASQVDVRDFD------AMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHI 164 (299)
T ss_dssp EEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999875 5555543 79999999997542 1346779999999999999987542
Q ss_pred ---CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHH
Q psy7542 195 ---IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYM 271 (762)
Q Consensus 195 ---~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~ 271 (762)
++..++|++||..+..... . ...|+.||+..+.+.+..+
T Consensus 165 ~~~~~~g~Iv~isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~l~~~la 206 (299)
T 3t7c_A 165 MAGKRGGSIVFTSSIGGLRGAE----------N----------------------------IGNYIASKHGLHGLMRTMA 206 (299)
T ss_dssp HHTTSCEEEEEECCGGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcEEEEECChhhccCCC----------C----------------------------cchHHHHHHHHHHHHHHHH
Confidence 2356899999986543211 0 1579999999998888776
Q ss_pred Hc----CCCEEEEeeeeeccCCCCCCCC---CCCCCCCc--hHHHHHH-hcCCeEEEeeCCCcccccccHHHHHHHHHHH
Q psy7542 272 EA----GMPCMILRPSIIIPIWKDPLPG---WTDNINGP--TGLLIGA-GKGIIRTMYCDYSTCADFLPVDVLVNGVLLS 341 (762)
Q Consensus 272 ~~----glpv~IvRPs~V~G~~~eP~pG---Widn~~gp--~~li~~~-~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a 341 (762)
.. |+.+..++||.|.++.....+. +......+ ....... ... ... ..+...+|+|++++.+
T Consensus 207 ~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~p-~r~~~pedvA~~v~fL 277 (299)
T 3t7c_A 207 LELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVASRQMH--------VLP-IPYVEPADISNAILFL 277 (299)
T ss_dssp HHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHHHHHS--------SSS-CSCBCHHHHHHHHHHH
T ss_pred HHhcccCcEEEEEecCCccCccccccchhhhhhhhhccchhhHHHHHhhhhc--------ccC-cCCCCHHHHHHHHHHH
Confidence 53 8999999999997764321000 00000000 0000000 000 011 3477899999999999
Q ss_pred hhcccCCCCCCceEEEecCC
Q psy7542 342 TWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 342 ~~~~~~~~~~~~~iyNi~s~ 361 (762)
+..... -..++++++.+|
T Consensus 278 ~s~~a~--~itG~~i~vdGG 295 (299)
T 3t7c_A 278 VSDDAR--YITGVSLPVDGG 295 (299)
T ss_dssp HSGGGT--TCCSCEEEESTT
T ss_pred hCcccc--cCcCCEEeeCCC
Confidence 876543 125789999887
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-16 Score=162.72 Aligned_cols=227 Identities=11% Similarity=0.050 Sum_probs=149.5
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|+||||||||+||++++++|++. +.+|+++.|.. ++++++.+ .+. ....++.++.+|+++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~~~------~~~~~~~~~~~D~~~ 62 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKD--GFAVAIADYND------ATAKAVAS-----EIN------QAGGHAVAVKVDVSD 62 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHH------HTTCCEEEEECCTTS
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HHH------hcCCcEEEEEecCCC
Confidence 589999999999999999999998 67889999863 22222211 111 112578899999998
Q ss_pred CCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CC-ccEEEE
Q psy7542 141 PDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IH-LQLFVY 202 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~-lk~fV~ 202 (762)
++ +++++++ ++|+|||+||.... .+.++..+++|+.|+.++++++... .+ ..++|+
T Consensus 63 ~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~ 136 (256)
T 1geg_A 63 RD------QVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIIN 136 (256)
T ss_dssp HH------HHHHHHHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred HH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 65 5655554 79999999996532 2346678999999999988887642 12 479999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~ 278 (762)
+||..+.... |. ...|+.||+..|.+++..+. .|++++
T Consensus 137 isS~~~~~~~----------~~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~ 178 (256)
T 1geg_A 137 ACSQAGHVGN----------PE----------------------------LAVYSSSKFAVRGLTQTAARDLAPLGITVN 178 (256)
T ss_dssp ECCGGGTSCC----------TT----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ECchhhcCCC----------CC----------------------------chhHHHHHHHHHHHHHHHHHHHHHcCeEEE
Confidence 9998654221 00 15799999999998887765 289999
Q ss_pred EEeeeeeccCCCCCCCC-CCCCCC-CchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 279 ILRPSIIIPIWKDPLPG-WTDNIN-GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pG-Widn~~-gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+++||.|.++....... +..... ........... ......+...+|+|++++.++...... ..++++
T Consensus 179 ~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~p~~r~~~p~dvA~~v~~l~s~~~~~--~tG~~i 247 (256)
T 1geg_A 179 GYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAK---------RITLGRLSEPEDVAACVSYLASPDSDY--MTGQSL 247 (256)
T ss_dssp EEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHT---------TCTTCSCBCHHHHHHHHHHHHSGGGTT--CCSCEE
T ss_pred EEEECCCccchhhhhhhhccccccCChHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCccccC--CCCCEE
Confidence 99999886642100000 000000 00000111111 011234789999999999988654321 147889
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 248 ~vdGG 252 (256)
T 1geg_A 248 LIDGG 252 (256)
T ss_dssp EESSS
T ss_pred EeCCC
Confidence 98876
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=169.93 Aligned_cols=233 Identities=17% Similarity=0.119 Sum_probs=156.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ .+.... ....++.++.+|+
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~--G~~V~~~~r~~------~~~~~~~~-----~l~~~~---~~~~~~~~~~~Dv 87 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKE--GAQVTITGRNE------DRLEETKQ-----QILKAG---VPAEKINAVVADV 87 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHHHTT---CCGGGEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HHHhcC---CCCceEEEEecCC
Confidence 57899999999999999999999998 77899999863 22222211 111100 0012788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc---------cccHHHHHHHhHHHHHHHHHHHHHc---CCccE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF---------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQL 199 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f---------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~ 199 (762)
++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+ .+
T Consensus 88 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~ 160 (297)
T 1xhl_A 88 TEAS------GQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GE 160 (297)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CE
Confidence 9865 5555544 78999999996532 1346678999999999999988653 23 69
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 275 (762)
+|++||..+..... |. ...|+.||+..+.+.+..+. .|+
T Consensus 161 IV~isS~~~~~~~~---------~~----------------------------~~~Y~asKaa~~~l~~~la~el~~~gI 203 (297)
T 1xhl_A 161 IVNVSSIVAGPQAH---------SG----------------------------YPYYACAKAALDQYTRCTAIDLIQHGV 203 (297)
T ss_dssp EEEECCGGGSSSCC---------TT----------------------------SHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred EEEEcCchhccCCC---------CC----------------------------cchHHHHHHHHHHHHHHHHHHhcccCe
Confidence 99999986543210 00 15799999999999887764 389
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCch-------HHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc-cC
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPT-------GLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF-LS 347 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~-------~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~-~~ 347 (762)
++++++||.|.++.... ...+. ......... .....+..++|+|++++.++... ..
T Consensus 204 ~v~~v~PG~v~T~~~~~-------~~~~~~~~~~~~~~~~~~~~~---------~p~~r~~~pedvA~~v~~l~s~~~~~ 267 (297)
T 1xhl_A 204 RVNSVSPGAVATGFMGA-------MGLPETASDKLYSFIGSRKEC---------IPVGHCGKPEEIANIIVFLADRNLSS 267 (297)
T ss_dssp EEEEEEECCBCSSHHHH-------TTCCHHHHHHHHHHHHHCTTT---------CTTSSCBCHHHHHHHHHHHHCHHHHT
T ss_pred EEEEEeeCCCcCccccc-------cccccccccchHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCCcccC
Confidence 99999999987653210 00000 011111111 11235789999999999988654 22
Q ss_pred CCCCCceEEEecCCCCCcccHHHH
Q psy7542 348 NPGNTMRVINLTANKDFQITWYDI 371 (762)
Q Consensus 348 ~~~~~~~iyNi~s~~~~piT~~el 371 (762)
. ..++++++.++ ..+.+.+.
T Consensus 268 ~--itG~~i~vdGG--~~~~~~~~ 287 (297)
T 1xhl_A 268 Y--IIGQSIVADGG--STLVMGMQ 287 (297)
T ss_dssp T--CCSCEEEESTT--GGGCCGGG
T ss_pred C--ccCcEEEECCC--cccccccc
Confidence 1 14789999887 44444443
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=9.2e-16 Score=157.12 Aligned_cols=212 Identities=19% Similarity=0.177 Sum_probs=148.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ .+. .....++.++.+|++
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~~~-----~~~~~~~~~~~~D~~ 62 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARD--GYALALGARSV------DRLEKIAH-----ELM-----QEQGVEVFYHHLDVS 62 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHH-----HHHCCCEEEEECCTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HHH-----hhcCCeEEEEEeccC
Confidence 3789999999999999999999998 67889999863 23332211 111 112468899999999
Q ss_pred CCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEEE
Q psy7542 140 VPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVYV 203 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~v 203 (762)
+++ ++.++++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+-.++|.+
T Consensus 63 ~~~------~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~ 136 (235)
T 3l77_A 63 KAE------SVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVT 136 (235)
T ss_dssp CHH------HHHHHCC-HHHHHSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHH------HHHHHHHHHHHhcCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 876 6777766 68999999997542 2456678999999999999998642 123567788
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--CCCEEEEe
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--GMPCMILR 281 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--glpv~IvR 281 (762)
||..+.... |. ...|+.||+..+.+++..... +++++.++
T Consensus 137 sS~~~~~~~----------~~----------------------------~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~ 178 (235)
T 3l77_A 137 TSDVSARLI----------PY----------------------------GGGYVSTKWAARALVRTFQIENPDVRFFELR 178 (235)
T ss_dssp CCGGGSSCC----------TT----------------------------CHHHHHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred ecchhcccC----------CC----------------------------cchHHHHHHHHHHHHHHHhhcCCCeEEEEEe
Confidence 876543211 11 157999999999999887443 89999999
Q ss_pred eeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 282 PSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 282 Ps~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
||.|-.+.....++ ......++..+|+|++++.++..+... ..+++.....+
T Consensus 179 PG~v~T~~~~~~~~--------------------------~~~~~~~~~p~dva~~v~~l~~~~~~~--~~~~~~~~~~~ 230 (235)
T 3l77_A 179 PGAVDTYFGGSKPG--------------------------KPKEKGYLKPDEIAEAVRCLLKLPKDV--RVEELMLRSVY 230 (235)
T ss_dssp ECSBSSSTTTCCSC--------------------------CCGGGTCBCHHHHHHHHHHHHTSCTTC--CCCEEEECCTT
T ss_pred CCccccccccccCC--------------------------cccccCCCCHHHHHHHHHHHHcCCCCC--ccceEEEeecc
Confidence 99886543221110 011125788999999999999876542 13444444433
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-15 Score=159.94 Aligned_cols=237 Identities=13% Similarity=0.069 Sum_probs=157.7
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCc----------chHHHHHHHhcChhHHHHHhhhhcccc
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNK----------NSRERLEEIFQSPLYEALKKEQSESAI 127 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~----------~~~eRl~~ll~~~~f~~l~~~~~~~~~ 127 (762)
.++||+||||||+|+||++++++|++. +.+|+++.|..... ...++++++.+ .+ ...
T Consensus 8 ~l~~k~~lVTGas~gIG~aia~~la~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~ 74 (286)
T 3uve_A 8 RVEGKVAFVTGAARGQGRSHAVRLAQE--GADIIAVDICKPIRAGVVDTAIPASTPEDLAETAD-----LV------KGH 74 (286)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHH-----HH------HTT
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHC--CCeEEEEeccccccccccccccccCCHHHHHHHHH-----HH------hhc
Confidence 358999999999999999999999998 78889998863211 11344443321 11 122
Q ss_pred cCCeEEEEeecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHH
Q psy7542 128 FEKVIPINGDVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSK 192 (762)
Q Consensus 128 ~~kV~~V~GDl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~ 192 (762)
..++.++.+|+++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++.
T Consensus 75 ~~~~~~~~~Dv~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~ 148 (286)
T 3uve_A 75 NRRIVTAEVDVRDYD------ALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGV 148 (286)
T ss_dssp TCCEEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CCceEEEEcCCCCHH------HHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHH
Confidence 368999999999876 5655544 78999999997542 23466789999999999999886
Q ss_pred Hc----CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHH
Q psy7542 193 QM----IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVT 268 (762)
Q Consensus 193 ~~----~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~ 268 (762)
.. +.-.++|++||..+..... . ...|+.||+..+.+.+
T Consensus 149 ~~~~~~~~~g~iv~isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~~~~ 190 (286)
T 3uve_A 149 PHMIAGGRGGSIILTSSVGGLKAYP----------H----------------------------TGHYVAAKHGVVGLMR 190 (286)
T ss_dssp HHHHHHTSCEEEEEECCGGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcEEEEECchhhccCCC----------C----------------------------ccHHHHHHHHHHHHHH
Confidence 42 1235899999986543211 0 1579999999998888
Q ss_pred HHHH----cCCCEEEEeeeeeccCCCCCCCC---CCCCC--CCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHH
Q psy7542 269 EYME----AGMPCMILRPSIIIPIWKDPLPG---WTDNI--NGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVL 339 (762)
Q Consensus 269 ~~~~----~glpv~IvRPs~V~G~~~eP~pG---Widn~--~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii 339 (762)
..+. .|+.+..++||.|..+....... +.... ..+.... ....- ..... ..+...+|+|++++
T Consensus 191 ~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~p-~r~~~p~dvA~~v~ 262 (286)
T 3uve_A 191 AFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDDMA-PICQM------FHTLP-IPWVEPIDISNAVL 262 (286)
T ss_dssp HHHHHHGGGTEEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHH-HHHHT------TCSSS-CSCBCHHHHHHHHH
T ss_pred HHHHHhcccCeEEEEEecCcccCCcccccchhhhccccccccchhhHH-HHHHh------hhccC-CCcCCHHHHHHHHH
Confidence 7765 28999999999987764321000 00000 0010000 00000 00011 45789999999999
Q ss_pred HHhhcccCCCCCCceEEEecCC
Q psy7542 340 LSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 340 ~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
.++..... -..++++++.+|
T Consensus 263 fL~s~~a~--~itG~~i~vdGG 282 (286)
T 3uve_A 263 FFASDEAR--YITGVTLPIDAG 282 (286)
T ss_dssp HHHSGGGT--TCCSCEEEESTT
T ss_pred HHcCcccc--CCcCCEEeECCc
Confidence 98865433 125789999887
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-16 Score=162.73 Aligned_cols=221 Identities=14% Similarity=0.047 Sum_probs=153.0
Q ss_pred cCCCEEEEECCC--ChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGAS--GFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGAT--GFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
++||+|+||||+ |+||++++++|++. +.+|+++.|... ..+.++++.+ + ..++.++.+
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~--G~~V~~~~r~~~---~~~~~~~l~~---------~------~~~~~~~~~ 63 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQ--GATLAFTYLNES---LEKRVRPIAQ---------E------LNSPYVYEL 63 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTT--TCEEEEEESSTT---THHHHHHHHH---------H------TTCCCEEEC
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHC--CCEEEEEeCCHH---HHHHHHHHHH---------h------cCCcEEEEc
Confidence 478999999999 99999999999998 778999999763 2233333211 1 124788999
Q ss_pred ecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-----------cccHHHHHHHhHHHHHHHHHHHHHc-CCc
Q psy7542 137 DVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-----------DDYMQTYVFLNTRGTRDMLNLSKQM-IHL 197 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-----------~~~l~~~~~~NV~GT~~LLelA~~~-~~l 197 (762)
|+++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... ..-
T Consensus 64 D~~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~ 137 (275)
T 2pd4_A 64 DVSKEE------HFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNG 137 (275)
T ss_dssp CTTCHH------HHHHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE
T ss_pred CCCCHH------HHHHHHHHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccC
Confidence 999865 5555443 68999999997542 1346678999999999999999764 112
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---- 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---- 273 (762)
.++|++||..+.... |. ...|+.||+..+.+++..+..
T Consensus 138 g~iv~isS~~~~~~~----------~~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~ 179 (275)
T 2pd4_A 138 ASVLTLSYLGSTKYM----------AH----------------------------YNVMGLAKAALESAVRYLAVDLGKH 179 (275)
T ss_dssp EEEEEEECGGGTSBC----------TT----------------------------CHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEecchhcCCC----------CC----------------------------chhhHHHHHHHHHHHHHHHHHhhhc
Confidence 589999997653211 00 147999999999998877653
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+++++++||.|.++.... ..........+.... ....+...+|+|++++.++..... ...+
T Consensus 180 gi~v~~v~PG~v~T~~~~~-------~~~~~~~~~~~~~~~---------p~~~~~~p~dva~~~~~l~s~~~~--~~tG 241 (275)
T 2pd4_A 180 HIRVNALSAGPIRTLASSG-------IADFRMILKWNEINA---------PLRKNVSLEEVGNAGMYLLSSLSS--GVSG 241 (275)
T ss_dssp TCEEEEEEECCCCCTTGGG-------STTHHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred CeEEEEEeeCccccchhhh-------ccccHHHHHHHHhcC---------CcCCCCCHHHHHHHHHHHhCcccc--CCCC
Confidence 8999999999987764221 111111211111110 112367899999999998865432 1247
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++++.++
T Consensus 242 ~~~~vdgg 249 (275)
T 2pd4_A 242 EVHFVDAG 249 (275)
T ss_dssp CEEEESTT
T ss_pred CEEEECCC
Confidence 88988876
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.8e-16 Score=159.00 Aligned_cols=190 Identities=18% Similarity=0.130 Sum_probs=131.0
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ + ..++.++.+|++
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~--G~~V~~~~r~~------~~~~~~~~---------~------~~~~~~~~~D~~ 60 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAK--GYRVGLMARDE------KRLQALAA---------E------LEGALPLPGDVR 60 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH---------H------STTCEEEECCTT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH---------H------hhhceEEEecCC
Confidence 3678999999999999999999998 67899999853 22322211 0 136889999999
Q ss_pred CCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHH----HcCCccEEE
Q psy7542 140 VPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSK----QMIHLQLFV 201 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~----~~~~lk~fV 201 (762)
+++ ++++++ ..+|+|||+||.... .+.+...+++|+.|+.++++.+. +. +..+||
T Consensus 61 ~~~------~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~iv 133 (234)
T 2ehd_A 61 EEG------DWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR-GGGTIV 133 (234)
T ss_dssp CHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCcEEE
Confidence 865 455444 378999999997542 23466789999999987666553 33 568999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... + ...|+.||+..|.+++..+. .|+++
T Consensus 134 ~isS~~~~~~~~---------~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 175 (234)
T 2ehd_A 134 NVGSLAGKNPFK---------G-----------------------------GAAYNASKFGLLGLAGAAMLDLREANVRV 175 (234)
T ss_dssp EECCTTTTSCCT---------T-----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECCchhcCCCC---------C-----------------------------CchhhHHHHHHHHHHHHHHHHHhhcCcEE
Confidence 999986543210 0 15799999988888776654 38999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
+++|||.|..+.... . + . . ..++..+|+|++++.++....
T Consensus 176 ~~v~Pg~v~t~~~~~-------~--~---------~---~--------~~~~~~~dvA~~~~~l~~~~~ 215 (234)
T 2ehd_A 176 VNVLPGSVDTGFAGN-------T--P---------G---Q--------AWKLKPEDVAQAVLFALEMPG 215 (234)
T ss_dssp EEEECC---------------------------------------------CCHHHHHHHHHHHHHSCC
T ss_pred EEEEeCCCcCCcccc-------c--c---------c---c--------cCCCCHHHHHHHHHHHhCCCc
Confidence 999999875542110 0 0 0 0 015789999999999987654
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=9.9e-16 Score=163.13 Aligned_cols=221 Identities=10% Similarity=0.023 Sum_probs=154.2
Q ss_pred cCCCEEEEECCCCh--hHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGASGF--VGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGATGF--LG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
++||+||||||+|+ ||++++++|++. +.+|+++.|... ..+.++++.+ ...++.++.+
T Consensus 29 l~gk~~lVTGasg~~GIG~aia~~la~~--G~~V~~~~r~~~---~~~~~~~~~~---------------~~~~~~~~~~ 88 (293)
T 3grk_A 29 LQGKRGLILGVANNRSIAWGIAKAAREA--GAELAFTYQGDA---LKKRVEPLAE---------------ELGAFVAGHC 88 (293)
T ss_dssp TTTCEEEEECCCSSSSHHHHHHHHHHHT--TCEEEEEECSHH---HHHHHHHHHH---------------HHTCEEEEEC
T ss_pred CCCCEEEEEcCCCCCcHHHHHHHHHHHC--CCEEEEEcCCHH---HHHHHHHHHH---------------hcCCceEEEC
Confidence 68999999999999 999999999998 778888888632 2233333211 1246889999
Q ss_pred ecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-----------cccHHHHHHHhHHHHHHHHHHHHHc-CCc
Q psy7542 137 DVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-----------DDYMQTYVFLNTRGTRDMLNLSKQM-IHL 197 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-----------~~~l~~~~~~NV~GT~~LLelA~~~-~~l 197 (762)
|+++++ +++.+++ .+|++||+||.... .+.+...+++|+.|+..+++++... ..-
T Consensus 89 Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~ 162 (293)
T 3grk_A 89 DVADAA------SIDAVFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADG 162 (293)
T ss_dssp CTTCHH------HHHHHHHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTC
T ss_pred CCCCHH------HHHHHHHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 999875 5555543 68999999997641 2456678999999999999998763 234
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---- 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---- 273 (762)
.++|++||..+..... ....|+.||+..+.+.+..+..
T Consensus 163 g~Iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~ 204 (293)
T 3grk_A 163 GSILTLTYYGAEKVMP--------------------------------------NYNVMGVAKAALEASVKYLAVDLGPQ 204 (293)
T ss_dssp EEEEEEECGGGTSBCT--------------------------------------TTTHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CEEEEEeehhhccCCC--------------------------------------chHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 5899999986543211 0157999999999998877652
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+++.+++||.|.++..... ............. .....+..++|+|++++.++..... ...+
T Consensus 205 gI~vn~v~PG~v~T~~~~~~-------~~~~~~~~~~~~~---------~p~~r~~~pedvA~~v~~L~s~~~~--~itG 266 (293)
T 3grk_A 205 NIRVNAISAGPIKTLAASGI-------GDFRYILKWNEYN---------APLRRTVTIDEVGDVGLYFLSDLSR--SVTG 266 (293)
T ss_dssp TEEEEEEEECCCCC-------------CCHHHHHHHHHHH---------STTSSCCCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred CCEEEEEecCCCcchhhhcc-------cchHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCcccc--CCcc
Confidence 89999999999877543211 1111222221111 1123467899999999998876433 1257
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++++.++
T Consensus 267 ~~i~vdGG 274 (293)
T 3grk_A 267 EVHHADSG 274 (293)
T ss_dssp CEEEESTT
T ss_pred eEEEECCC
Confidence 89999887
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-15 Score=160.01 Aligned_cols=221 Identities=11% Similarity=0.056 Sum_probs=153.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|... ++++++.+ .+ .....++.++.+|+
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~--G~~V~~~~~~~~-----~~~~~~~~-----~l------~~~~~~~~~~~~Dv 90 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALE--GAAVALTYVNAA-----ERAQAVVS-----EI------EQAGGRAVAIRADN 90 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCH-----HHHHHHHH-----HH------HHTTCCEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCCH-----HHHHHHHH-----HH------HhcCCcEEEEECCC
Confidence 58999999999999999999999998 778888876532 22222211 11 11236789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYV 203 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~v 203 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+..+++++... ..-.++|++
T Consensus 91 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~i 164 (271)
T 3v2g_A 91 RDAE------AIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITI 164 (271)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEE
Confidence 9875 5655554 78999999997542 2456778999999999999998763 334689999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~I 279 (762)
||..+.... .|. ...|+.||+..+.+.+..+.. |+++.+
T Consensus 165 sS~~~~~~~---------~~~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~ 207 (271)
T 3v2g_A 165 GSNLAELVP---------WPG----------------------------ISLYSASKAALAGLTKGLARDLGPRGITVNI 207 (271)
T ss_dssp CCGGGTCCC---------STT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred eChhhccCC---------CCC----------------------------chHHHHHHHHHHHHHHHHHHHhhhhCeEEEE
Confidence 996442110 000 157999999999988777652 899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
++||.|.++.....+ ......... .....+...+|+|++++.++...... ..++++++.
T Consensus 208 v~PG~v~T~~~~~~~----------~~~~~~~~~---------~~~~r~~~pedvA~~v~fL~s~~~~~--itG~~i~vd 266 (271)
T 3v2g_A 208 VHPGSTDTDMNPADG----------DHAEAQRER---------IATGSYGEPQDIAGLVAWLAGPQGKF--VTGASLTID 266 (271)
T ss_dssp EEECSBCSSSSCSSC----------SSHHHHHHT---------CTTSSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEES
T ss_pred EecCCCcCCcccccc----------hhHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCcccCC--ccCCEEEeC
Confidence 999999876432111 011111111 11234678999999999888654331 257899998
Q ss_pred CC
Q psy7542 360 AN 361 (762)
Q Consensus 360 s~ 361 (762)
+|
T Consensus 267 GG 268 (271)
T 3v2g_A 267 GG 268 (271)
T ss_dssp TT
T ss_pred cC
Confidence 76
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-16 Score=168.95 Aligned_cols=222 Identities=11% Similarity=0.050 Sum_probs=153.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|.. +++++..+ .+ .....++.++.+|+
T Consensus 24 l~gk~~lVTGas~gIG~aia~~la~~--G~~V~~~~r~~------~~~~~~~~-----~l------~~~~~~~~~~~~Dv 84 (271)
T 4ibo_A 24 LGGRTALVTGSSRGLGRAMAEGLAVA--GARILINGTDP------SRVAQTVQ-----EF------RNVGHDAEAVAFDV 84 (271)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEECCSCH------HHHHHHHH-----HH------HHTTCCEEECCCCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HH------HhcCCceEEEEcCC
Confidence 58999999999999999999999998 67888888853 22222211 11 11235789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 85 ~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV 158 (271)
T 4ibo_A 85 TSES------EIIEAFARLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIV 158 (271)
T ss_dssp TCHH------HHHHHHHHHHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9865 5555554 68999999997532 2456778999999999998887543 2346899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+..... ....|+.||+..+.+++..+.. |+++
T Consensus 159 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~v 200 (271)
T 4ibo_A 159 NIGSLTSELARA--------------------------------------TVAPYTVAKGGIKMLTRAMAAEWAQYGIQA 200 (271)
T ss_dssp EECCGGGTSBCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEccHHhCCCCC--------------------------------------CchhHHHHHHHHHHHHHHHHHHHhhhCeEE
Confidence 999986542211 0157999999999998877652 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
..++||.|.++.... .............+ .....+..++|+|++++.++...... ..+++++
T Consensus 201 n~v~PG~v~T~~~~~-------~~~~~~~~~~~~~~---------~p~~r~~~pedva~~v~~L~s~~~~~--itG~~i~ 262 (271)
T 4ibo_A 201 NAIGPGYMLTDMNQA-------LIDNPEFDAWVKAR---------TPAKRWGKPQELVGTAVFLSASASDY--VNGQIIY 262 (271)
T ss_dssp EEEEECSBCSGGGHH-------HHHCHHHHHHHHHH---------STTCSCBCGGGGHHHHHHHHSGGGTT--CCSCEEE
T ss_pred EEEEeccEeCcchhh-------cccCHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCccccC--CCCcEEE
Confidence 999999887653210 00000111111111 11234677899999999887754431 2578999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 263 vdGG 266 (271)
T 4ibo_A 263 VDGG 266 (271)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9887
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-16 Score=167.11 Aligned_cols=238 Identities=14% Similarity=0.074 Sum_probs=157.7
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCc------chHHHHHHHhcChhHHHHHhhhhcccccCCe
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNK------NSRERLEEIFQSPLYEALKKEQSESAIFEKV 131 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~------~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV 131 (762)
.++||+||||||+|+||++++++|++. +.+|+++.|..... ...+++++..+ .+ .....++
T Consensus 43 ~l~gk~~lVTGas~GIG~aia~~la~~--G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~ 109 (317)
T 3oec_A 43 RLQGKVAFITGAARGQGRTHAVRLAQD--GADIVAIDLCRQQPNLDYAQGSPEELKETVR-----LV------EEQGRRI 109 (317)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEECCCCCTTCCSCCCCHHHHHHHHH-----HH------HHTTCCE
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHC--CCeEEEEecccccccccccccCHHHHHHHHH-----HH------HhcCCeE
Confidence 368999999999999999999999999 77888888763321 11344443321 11 1123678
Q ss_pred EEEEeecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---
Q psy7542 132 IPINGDVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM--- 194 (762)
Q Consensus 132 ~~V~GDl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~--- 194 (762)
.++.+|+++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+..+++++...
T Consensus 110 ~~~~~Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~ 183 (317)
T 3oec_A 110 IARQADVRDLA------SLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIE 183 (317)
T ss_dssp EEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999999865 5555544 78999999997642 2456778999999999999988542
Q ss_pred -CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc
Q psy7542 195 -IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA 273 (762)
Q Consensus 195 -~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~ 273 (762)
+.-.++|++||..+..... . ...|+.||+..+.+++..+..
T Consensus 184 ~~~~g~Iv~isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~l~~~la~e 225 (317)
T 3oec_A 184 RGQGGSVIFVSSTVGLRGAP----------G----------------------------QSHYAASKHGVQGLMLSLANE 225 (317)
T ss_dssp TCSCEEEEEECCGGGSSCCT----------T----------------------------BHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECcHHhcCCCC----------C----------------------------CcchHHHHHHHHHHHHHHHHH
Confidence 2246799999986543211 0 157999999999998887663
Q ss_pred ----CCCEEEEeeeeeccCCCCCCC---CCCCCCCCch-HHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc
Q psy7542 274 ----GMPCMILRPSIIIPIWKDPLP---GWTDNINGPT-GLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF 345 (762)
Q Consensus 274 ----glpv~IvRPs~V~G~~~eP~p---GWidn~~gp~-~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~ 345 (762)
|+++++++||.|.++...... .+......+. .-........ ......++.++|+|++++.++...
T Consensus 226 ~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~p~~~~~pedvA~av~fL~s~~ 298 (317)
T 3oec_A 226 VGRHNIRVNSVNPGAVNTEMALNEKLLKMFLPHLENPTREDAAELFSQL-------TLLPIPWVEPEDVSNAVAWLASDE 298 (317)
T ss_dssp HGGGTEEEEEEEECSBSSHHHHCHHHHHHHCTTCSSCCHHHHHHHHTTT-------CSSSSSSBCHHHHHHHHHHHTSGG
T ss_pred HhhcCeEEEEEecCcccCccccchhhhhhhhhhccccchhHHHHHHhhh-------ccCCCCCCCHHHHHHHHHHHcCCc
Confidence 899999999988765311000 0000000000 0001110000 011156889999999999988654
Q ss_pred cCCCCCCceEEEecCC
Q psy7542 346 LSNPGNTMRVINLTAN 361 (762)
Q Consensus 346 ~~~~~~~~~iyNi~s~ 361 (762)
.. -..++++++.+|
T Consensus 299 a~--~itG~~i~vdGG 312 (317)
T 3oec_A 299 AR--YIHGAAIPVDGG 312 (317)
T ss_dssp GT--TCCSCEEEESTT
T ss_pred cc--CCCCCEEEECcc
Confidence 33 125789999887
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.5e-16 Score=163.25 Aligned_cols=228 Identities=16% Similarity=0.046 Sum_probs=153.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ .+ .....++.++.+|+
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~------~~~~~~~~-----~l------~~~~~~~~~~~~Dv 86 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAAD--GVTVGALGRTR------TEVEEVAD-----EI------VGAGGQAIALEADV 86 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESSH------HHHHHHHH-----HH------TTTTCCEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HH------HhcCCcEEEEEccC
Confidence 47899999999999999999999998 77889999863 22222211 01 12236789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHH----HcCCccE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSK----QMIHLQL 199 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~----~~~~lk~ 199 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+..+++++. +. +..+
T Consensus 87 ~d~~------~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~ 159 (283)
T 3v8b_A 87 SDEL------QMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQR-GGGA 159 (283)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCce
Confidence 9875 5555444 78999999997532 13466789999999999999983 33 4579
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----gl 275 (762)
+|++||..+.... +.|. ...|+.||+..+.+++..+.. |+
T Consensus 160 Iv~isS~~~~~~~--------~~~~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gI 203 (283)
T 3v8b_A 160 IVVVSSINGTRTF--------TTPG----------------------------ATAYTATKAAQVAIVQQLALELGKHHI 203 (283)
T ss_dssp EEEECCSBTTTBC--------CSTT----------------------------CHHHHHHHHHHHHHHHHHHHHTTTTTE
T ss_pred EEEEcChhhccCC--------CCCC----------------------------chHHHHHHHHHHHHHHHHHHHhCccCc
Confidence 9999998653211 0010 157999999999999888763 79
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcc--cccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTC--ADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~--~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
.+.+++||.|..+...... ..+. ... ............. ..+...+|+|++++.++...... ..+
T Consensus 204 ~vn~v~PG~v~T~~~~~~~------~~~~-~~~----~~~~~~~~~~~p~~~~r~~~pedvA~~v~fL~s~~a~~--itG 270 (283)
T 3v8b_A 204 RVNAVCPGAIETNISDNTK------LRHE-EET----AIPVEWPKGQVPITDGQPGRSEDVAELIRFLVSERARH--VTG 270 (283)
T ss_dssp EEEEEEECSBSSCTTCCTT------BCCH-HHH----SCCCBCTTCSCGGGTTCCBCHHHHHHHHHHHTSGGGTT--CCS
T ss_pred EEEEEEeCCCcCCcccccc------cccc-hhh----hhhhhhhhhcCccccCCCCCHHHHHHHHHHHcCccccC--CcC
Confidence 9999999998766432110 0000 000 0000000001111 34567899999999988754431 257
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++++.+|
T Consensus 271 ~~i~vdGG 278 (283)
T 3v8b_A 271 SPVWIDGG 278 (283)
T ss_dssp CEEEESTT
T ss_pred CEEEECcC
Confidence 89999876
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-16 Score=165.62 Aligned_cols=216 Identities=13% Similarity=0.087 Sum_probs=151.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ ....++.++.+|+
T Consensus 28 l~~k~vlVTGas~GIG~aia~~l~~~--G~~Vi~~~r~~------~~~~~~~~--------------~~~~~~~~~~~Dl 85 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGEATVRRLHAD--GLGVVIADLAA------EKGKALAD--------------ELGNRAEFVSTNV 85 (281)
T ss_dssp GTTEEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH--------------HHCTTEEEEECCT
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCh------HHHHHHHH--------------HhCCceEEEEcCC
Confidence 68999999999999999999999998 77899999863 23333211 1135789999999
Q ss_pred CCCCCCCCHHHHHhhcC------CccEEEEcccccCc-------------cccHHHHHHHhHHHHHHHHHHHHHc-----
Q psy7542 139 AVPDLGISAEDRQMLSE------TIHIVYHIAATVRF-------------DDYMQTYVFLNTRGTRDMLNLSKQM----- 194 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~------~vDiViH~AA~v~f-------------~~~l~~~~~~NV~GT~~LLelA~~~----- 194 (762)
++++ +++.+++ .+|+|||+||.... .+.+...+++|+.|+.++++++...
T Consensus 86 ~~~~------~v~~~~~~~~~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~ 159 (281)
T 3ppi_A 86 TSED------SVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAE 159 (281)
T ss_dssp TCHH------HHHHHHHHHTTSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSC
T ss_pred CCHH------HHHHHHHHHHHhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Confidence 9865 4554443 57999999553321 1236788999999999999988642
Q ss_pred ----CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHH
Q psy7542 195 ----IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEY 270 (762)
Q Consensus 195 ----~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~ 270 (762)
++-.++|++||..+..... . ...|+.||+..+.+++..
T Consensus 160 ~~~~~~~g~iv~isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~~~~~l 201 (281)
T 3ppi_A 160 PRENGERGALVLTASIAGYEGQI----------G----------------------------QTAYAAAKAGVIGLTIAA 201 (281)
T ss_dssp CCTTSCCEEEEEECCGGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCeEEEEEecccccCCCC----------C----------------------------CcccHHHHHHHHHHHHHH
Confidence 1335899999986643211 0 157999999888887766
Q ss_pred HH----cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 271 ME----AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 271 ~~----~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
+. .|+.+.+++||.|..+.... . ..........+. .....++.++|+|++++.++....
T Consensus 202 a~e~~~~gi~v~~v~PG~v~T~~~~~-------~--~~~~~~~~~~~~--------~~~~~~~~pedvA~~v~~l~s~~~ 264 (281)
T 3ppi_A 202 ARDLSSAGIRVNTIAPGTMKTPIMES-------V--GEEALAKFAANI--------PFPKRLGTPDEFADAAAFLLTNGY 264 (281)
T ss_dssp HHHHGGGTEEEEEEEECSBCCHHHHT-------T--CHHHHHHHHHTC--------CSSSSCBCHHHHHHHHHHHHHCSS
T ss_pred HHHHhhcCeEEEEEecCcCCchhhhc-------c--cHHHHHHHHhcC--------CCCCCCCCHHHHHHHHHHHHcCCC
Confidence 55 28999999999886542211 0 111222222211 111457899999999999998654
Q ss_pred CCCCCCceEEEecCC
Q psy7542 347 SNPGNTMRVINLTAN 361 (762)
Q Consensus 347 ~~~~~~~~iyNi~s~ 361 (762)
. .++++++.++
T Consensus 265 ~----tG~~i~vdGG 275 (281)
T 3ppi_A 265 I----NGEVMRLDGA 275 (281)
T ss_dssp C----CSCEEEESTT
T ss_pred c----CCcEEEECCC
Confidence 4 5889999887
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-16 Score=162.22 Aligned_cols=234 Identities=10% Similarity=-0.075 Sum_probs=143.5
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+||||||||+||++++++|++. +.+|+++.|...... . . +.+|++++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~--G~~V~~~~r~~~~~~---------------------------~--~-~~~Dl~~~ 49 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAA--GHQIVGIDIRDAEVI---------------------------A--D-LSTAEGRK 49 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSSSSEE---------------------------C--C-TTSHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCchhhc---------------------------c--c-cccCCCCH
Confidence 58999999999999999999998 678999999753210 0 1 46777765
Q ss_pred CCCCCHHHHHhhcC----CccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEEeCCcccCCCcc
Q psy7542 142 DLGISAEDRQMLSE----TIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVSTAYCHPKEKV 214 (762)
Q Consensus 142 ~LGLs~~~l~~l~~----~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vSSay~~~~~~~ 214 (762)
+ +++++++ .+|+|||+||......+++..+++|+.|+.++++++... .+..++|++||..+......
T Consensus 50 ~------~v~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~ 123 (257)
T 1fjh_A 50 Q------AIADVLAKCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFD 123 (257)
T ss_dssp H------HHHHHHTTCTTCCSEEEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGG
T ss_pred H------HHHHHHHHhCCCCCEEEECCCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccc
Confidence 4 5666654 469999999987645668899999999999999988642 24579999999866522110
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHh-hhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEeeeeeccCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQE-LLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILRPSIIIPIW 289 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~-l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvRPs~V~G~~ 289 (762)
+...+... ..-+.+........ ........|+.||+..|.+++..+. .|+++++++||.|.++.
T Consensus 124 --------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~ 192 (257)
T 1fjh_A 124 --------KNPLALAL---EAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPL 192 (257)
T ss_dssp --------GCTTHHHH---HHTCHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC-----
T ss_pred --------cchhhhhh---cccchhhhhhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcc
Confidence 00001000 00011111110000 0000125899999999999877654 28999999999887664
Q ss_pred CCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 290 KDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 290 ~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
.... . .......... .+ ......+++++|+|++++.++..... ...++++++.++
T Consensus 193 ~~~~-------~-~~~~~~~~~~----~~---~~~~~~~~~~~dvA~~~~~l~~~~~~--~~tG~~~~vdgG 247 (257)
T 1fjh_A 193 LQAG-------L-QDPRYGESIA----KF---VPPMGRRAEPSEMASVIAFLMSPAAS--YVHGAQIVIDGG 247 (257)
T ss_dssp ----------------------------C---CCSTTSCCCTHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred chhh-------c-cchhHHHHHH----hc---ccccCCCCCHHHHHHHHHHHhCchhc--CCcCCEEEECCC
Confidence 2210 0 0000000000 00 11122478999999999999876532 124788998877
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-16 Score=164.52 Aligned_cols=221 Identities=12% Similarity=0.094 Sum_probs=150.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|+||||+|+||++++++|++. +.+|+++.|.. ++++++.+ .+ .. ..++.++.+|+
T Consensus 27 l~~k~vlVTGas~gIG~aia~~L~~~--G~~V~~~~r~~------~~~~~~~~-----~l------~~-~~~~~~~~~Dv 86 (276)
T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEA--GARVFICARDA------EACADTAT-----RL------SA-YGDCQAIPADL 86 (276)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEECSCH------HHHHHHHH-----HH------TT-SSCEEECCCCT
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HH------Hh-cCceEEEEeeC
Confidence 57899999999999999999999998 67899998863 22222111 00 11 12788899999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCc----
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHL---- 197 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~l---- 197 (762)
++++ +++++++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+.
T Consensus 87 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~ 160 (276)
T 2b4q_A 87 SSEA------GARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENP 160 (276)
T ss_dssp TSHH------HHHHHHHHHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCC
Confidence 9865 4555443 78999999996532 2456789999999998888877531 122
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCc-hhHhhhHHHHHHHHHHHHc---
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPN-GYAYTKCLCEGVVTEYMEA--- 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn-~Y~~SK~~aE~lv~~~~~~--- 273 (762)
.++|++||..+..... . .. .|+.||+..|.+++..+..
T Consensus 161 g~iV~isS~~~~~~~~----------~----------------------------~~~~Y~asK~a~~~~~~~la~e~~~ 202 (276)
T 2b4q_A 161 ARVINIGSVAGISAMG----------E----------------------------QAYAYGPSKAALHQLSRMLAKELVG 202 (276)
T ss_dssp EEEEEECCGGGTCCCC----------C----------------------------SCTTHHHHHHHHHHHHHHHHHHHGG
T ss_pred CEEEEECCHHHcCCCC----------C----------------------------CccccHHHHHHHHHHHHHHHHHhcc
Confidence 7999999986643211 0 13 7999999999999877652
Q ss_pred -CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCC
Q psy7542 274 -GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNT 352 (762)
Q Consensus 274 -glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~ 352 (762)
|+++++++||.|.++... ... .......... .......+...+|+|++++.++..... ...
T Consensus 203 ~gI~vn~v~PG~v~T~~~~-------~~~--~~~~~~~~~~-------~~~p~~r~~~p~dvA~~v~~l~s~~~~--~~t 264 (276)
T 2b4q_A 203 EHINVNVIAPGRFPSRMTR-------HIA--NDPQALEADS-------ASIPMGRWGRPEEMAALAISLAGTAGA--YMT 264 (276)
T ss_dssp GTEEEEEEEECCCCSTTTH-------HHH--HCHHHHHHHH-------HTSTTSSCCCHHHHHHHHHHHHSGGGT--TCC
T ss_pred cCeEEEEEEeccCcCcchh-------hcc--hhHHHHHHhh-------cCCCCCCcCCHHHHHHHHHHHhCcccc--CCC
Confidence 899999999988655311 000 0011111110 001123478999999999998875432 124
Q ss_pred ceEEEecCC
Q psy7542 353 MRVINLTAN 361 (762)
Q Consensus 353 ~~iyNi~s~ 361 (762)
++++++.++
T Consensus 265 G~~i~vdGG 273 (276)
T 2b4q_A 265 GNVIPIDGG 273 (276)
T ss_dssp SCEEEESTT
T ss_pred CCEEEeCCC
Confidence 789998876
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.9e-16 Score=159.59 Aligned_cols=203 Identities=11% Similarity=0.125 Sum_probs=143.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|..... ......+.+|+
T Consensus 1 m~~k~vlITGas~gIG~~~a~~l~~~--G~~V~~~~r~~~~~---------------------------~~~~~~~~~D~ 51 (236)
T 1ooe_A 1 MSSGKVIVYGGKGALGSAILEFFKKN--GYTVLNIDLSANDQ---------------------------ADSNILVDGNK 51 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHT--TEEEEEEESSCCTT---------------------------SSEEEECCTTS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEecCcccc---------------------------ccccEEEeCCC
Confidence 36789999999999999999999998 78899999975421 12356678899
Q ss_pred CCCCCCCCHHHHHhhc---------CCccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS---------ETIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~---------~~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~f 200 (762)
++++ +++.++ .++|+|||+||.... .+.++..+++|+.|+.++++++... ..-.++
T Consensus 52 ~~~~------~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~i 125 (236)
T 1ooe_A 52 NWTE------QEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLL 125 (236)
T ss_dssp CHHH------HHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEE
Confidence 8765 444443 379999999996431 2345678999999999999998763 122589
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc------C
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA------G 274 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~------g 274 (762)
|++||..+.... |. ...|+.||+..+.+++..+.. |
T Consensus 126 v~isS~~~~~~~----------~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~~~g 167 (236)
T 1ooe_A 126 QLTGAAAAMGPT----------PS----------------------------MIGYGMAKAAVHHLTSSLAAKDSGLPDN 167 (236)
T ss_dssp EEECCGGGGSCC----------TT----------------------------BHHHHHHHHHHHHHHHHHHSTTSSCCTT
T ss_pred EEECchhhccCC----------CC----------------------------cHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 999998654211 00 157999999999999887653 5
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
+++++++||.|.++. ...... ......+++.+|+|++++..+..+... ...++
T Consensus 168 i~v~~v~Pg~v~t~~-----------------~~~~~~---------~~~~~~~~~~~dvA~~i~~~l~s~~~~-~~~G~ 220 (236)
T 1ooe_A 168 SAVLTIMPVTLDTPM-----------------NRKWMP---------NADHSSWTPLSFISEHLLKWTTETSSR-PSSGA 220 (236)
T ss_dssp CEEEEEEESCBCCHH-----------------HHHHST---------TCCGGGCBCHHHHHHHHHHHHHCGGGC-CCTTC
T ss_pred eEEEEEecCcccCcc-----------------hhhcCC---------CccccccCCHHHHHHHHHHHHcCCCcc-ccccc
Confidence 999999999775541 111100 011234688999999998665332221 12477
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
.+++.++
T Consensus 221 ~~~v~gg 227 (236)
T 1ooe_A 221 LLKITTE 227 (236)
T ss_dssp EEEEEEE
T ss_pred EEEEecC
Confidence 8888765
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=162.31 Aligned_cols=209 Identities=11% Similarity=0.084 Sum_probs=145.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|..... ..+..+.+|+
T Consensus 13 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~----------------------------~~~~~~~~D~ 62 (247)
T 1uzm_A 13 FVSRSVLVTGGNRGIGLAIAQRLAAD--GHKVAVTHRGSGAP----------------------------KGLFGVEVDV 62 (247)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSSCCC----------------------------TTSEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCChHHH----------------------------HHhcCeeccC
Confidence 57899999999999999999999998 67899999965321 1222478999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++++++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 63 ~~~~------~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv 136 (247)
T 1uzm_A 63 TDSD------AVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMI 136 (247)
T ss_dssp TCHH------HHHHHHHHHHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEE
Confidence 9865 5555443 68999999997542 2456779999999999999988642 2567999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+.... | ....|+.||+..|.+.+..+. .|+++
T Consensus 137 ~isS~~~~~~~----------~----------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v 178 (247)
T 1uzm_A 137 FIGSVSGLWGI----------G----------------------------NQANYAASKAGVIGMARSIARELSKANVTA 178 (247)
T ss_dssp EECCCCC-------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECCHhhccCC----------C----------------------------CChhHHHHHHHHHHHHHHHHHHhhhcCcEE
Confidence 99998653211 0 015799999988888877655 38999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
++++||.|.++... .. +.......... .....++.++|+|++++.++..... ...+++++
T Consensus 179 ~~v~PG~v~t~~~~-------~~--~~~~~~~~~~~---------~p~~~~~~~~dvA~~~~~l~s~~~~--~~~G~~i~ 238 (247)
T 1uzm_A 179 NVVAPGYIDTDMTR-------AL--DERIQQGALQF---------IPAKRVGTPAEVAGVVSFLASEDAS--YISGAVIP 238 (247)
T ss_dssp EEEEECSBCCHHHH-------HS--CHHHHHHHGGG---------CTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEEeCCCcccchh-------hc--CHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCcccc--CCcCCEEE
Confidence 99999988554211 00 01111111110 1123478999999999998865432 11478999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 239 vdgG 242 (247)
T 1uzm_A 239 VDGG 242 (247)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 9877
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.7e-16 Score=162.48 Aligned_cols=200 Identities=14% Similarity=0.116 Sum_probs=139.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ .+ .....++.++.+|+
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~~------~~~~~~~~~~~~D~ 87 (262)
T 3rkr_A 27 LSGQVAVVTGASRGIGAAIARKLGSL--GARVVLTARDV------EKLRAVER-----EI------VAAGGEAESHACDL 87 (262)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HH------HHTTCEEEEEECCT
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HH------HHhCCceeEEEecC
Confidence 57899999999999999999999998 77899999863 22222211 11 11235789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
++++ ++..+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+..+|
T Consensus 88 ~~~~------~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~i 161 (262)
T 3rkr_A 88 SHSD------AIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHI 161 (262)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceE
Confidence 9875 5555443 58999999997321 2446678999999999999887541 245799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... + ...|+.||+..+.+++..+. .|++
T Consensus 162 v~isS~~~~~~~~---------~-----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gi~ 203 (262)
T 3rkr_A 162 INISSLAGKNPVA---------D-----------------------------GAAYTASKWGLNGLMTSAAEELRQHQVR 203 (262)
T ss_dssp EEECSSCSSCCCT---------T-----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred EEEechhhcCCCC---------C-----------------------------CchHHHHHHHHHHHHHHHHHHhhhcCcE
Confidence 9999986543211 0 15799999999998887765 2899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
+++++||.|..+..... . .......++..+|+|++++.++.....
T Consensus 204 v~~v~PG~v~t~~~~~~-----------------~---------~~~~~~~~~~p~dvA~~v~~l~s~~~~ 248 (262)
T 3rkr_A 204 VSLVAPGSVRTEFGVGL-----------------S---------AKKSALGAIEPDDIADVVALLATQADQ 248 (262)
T ss_dssp EEEEEECCC------------------------------------------CCCHHHHHHHHHHHHTCCTT
T ss_pred EEEEecCCCcCCccccc-----------------c---------cccccccCCCHHHHHHHHHHHhcCccc
Confidence 99999998755421100 0 001123467899999999999876544
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.68 E-value=7.8e-16 Score=162.11 Aligned_cols=236 Identities=13% Similarity=0.082 Sum_probs=155.8
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCc-------chHHHHHHHhcChhHHHHHhhhhcccccCC
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNK-------NSRERLEEIFQSPLYEALKKEQSESAIFEK 130 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~-------~~~eRl~~ll~~~~f~~l~~~~~~~~~~~k 130 (762)
-++||+||||||+|+||++++++|++. +.+|+++.|..+.. ...+++++..+ .+ .....+
T Consensus 8 ~l~~k~~lVTGas~GIG~a~a~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~ 74 (277)
T 3tsc_A 8 KLEGRVAFITGAARGQGRAHAVRMAAE--GADIIAVDIAGKLPSCVPYDPASPDDLSETVR-----LV------EAANRR 74 (277)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHH-----HH------HHTTCC
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeccccccccccccccCHHHHHHHHH-----HH------HhcCCe
Confidence 358999999999999999999999999 77889998853211 12233433221 11 122468
Q ss_pred eEEEEeecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc--
Q psy7542 131 VIPINGDVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-- 194 (762)
Q Consensus 131 V~~V~GDl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-- 194 (762)
+.++.+|+++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++...
T Consensus 75 ~~~~~~D~~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~ 148 (277)
T 3tsc_A 75 IVAAVVDTRDFD------RLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRII 148 (277)
T ss_dssp EEEEECCTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 899999999865 5555543 68999999997643 2456778999999999999887542
Q ss_pred --CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH
Q psy7542 195 --IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME 272 (762)
Q Consensus 195 --~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~ 272 (762)
+.-.++|++||..+..... . ...|+.||+..+.+.+..+.
T Consensus 149 ~~~~~g~iv~isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~~~~~la~ 190 (277)
T 3tsc_A 149 EGGRGGSIILISSAAGMKMQP----------F----------------------------MIHYTASKHAVTGLARAFAA 190 (277)
T ss_dssp HHTSCEEEEEECCGGGTSCCS----------S----------------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCEEEEEccHhhCCCCC----------C----------------------------chhhHHHHHHHHHHHHHHHH
Confidence 1235899999986643211 0 15799999999999887766
Q ss_pred c----CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcC-CeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 273 A----GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKG-IIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 273 ~----glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G-~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
. |+++..++||.|.++.... ............. .......... ...+...+|+|++++.++.....
T Consensus 191 e~~~~gi~vn~v~PG~v~T~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-p~r~~~pedvA~~v~~L~s~~~~ 261 (277)
T 3tsc_A 191 ELGKHSIRVNSVHPGPVNTPMGSG--------DMVTAVGQAMETNPQLSHVLTPFL-PDWVAEPEDIADTVCWLASDESR 261 (277)
T ss_dssp HHGGGTEEEEEEEESSBSSGGGSH--------HHHHHHHHHHHTCGGGTTTTCCSS-SCSCBCHHHHHHHHHHHHSGGGT
T ss_pred HhCccCeEEEEEEeCCCcCCcccc--------hhhhhhhhcccccHHHHHHhhhcc-CCCCCCHHHHHHHHHHHhCcccc
Confidence 3 8999999999886653210 0000001000000 0000000111 12478899999999998876543
Q ss_pred CCCCCceEEEecCC
Q psy7542 348 NPGNTMRVINLTAN 361 (762)
Q Consensus 348 ~~~~~~~iyNi~s~ 361 (762)
. ..++++++.+|
T Consensus 262 ~--itG~~i~vdGG 273 (277)
T 3tsc_A 262 K--VTAAQIPVDQG 273 (277)
T ss_dssp T--CCSCEEEESTT
T ss_pred C--CcCCEEeeCCC
Confidence 1 25789999887
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=168.36 Aligned_cols=225 Identities=18% Similarity=0.151 Sum_probs=154.6
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.++||+||||||+|+||++++++|++. +.+|+++.|... ++++..+ .+. .....++.++.+|
T Consensus 24 ~l~~k~~lVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~------~~~~~~~-----~~~-----~~~~~~~~~~~~D 85 (277)
T 4fc7_A 24 LLRDKVAFITGGGSGIGFRIAEIFMRH--GCHTVIASRSLP------RVLTAAR-----KLA-----GATGRRCLPLSMD 85 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTT--TCEEEEEESCHH------HHHHHHH-----HHH-----HHHSSCEEEEECC
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH-----HHH-----HhcCCcEEEEEcC
Confidence 368999999999999999999999998 778999998632 2222111 111 1123678999999
Q ss_pred cCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 138 VAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
+++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+..++
T Consensus 86 v~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~i 159 (277)
T 4fc7_A 86 VRAPP------AVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVI 159 (277)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEE
Confidence 99875 5555543 78999999996432 2456778999999999999988531 134689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... ....|+.||+..+.+++..+.. |++
T Consensus 160 v~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gi~ 201 (277)
T 4fc7_A 160 VNITATLGNRGQA--------------------------------------LQVHAGSAKAAVDAMTRHLAVEWGPQNIR 201 (277)
T ss_dssp EEECCSHHHHTCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEECchhhCCCCC--------------------------------------CcHHHHHHHHHHHHHHHHHHHHhhhcCeE
Confidence 9999985532110 0157999999999988877652 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+..++||.|.++... ................ .....+..++|+|++++.++..... -..++++
T Consensus 202 vn~v~PG~v~t~~~~------~~~~~~~~~~~~~~~~---------~p~~r~~~p~dvA~~v~fL~s~~~~--~itG~~i 264 (277)
T 4fc7_A 202 VNSLAPGPISGTEGL------RRLGGPQASLSTKVTA---------SPLQRLGNKTEIAHSVLYLASPLAS--YVTGAVL 264 (277)
T ss_dssp EEEEEECCBSSSHHH------HHHSCCHHHHHHHHHT---------STTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEEECCEecchhh------hhccCCHHHHHHHhcc---------CCCCCCcCHHHHHHHHHHHcCCccC--CcCCCEE
Confidence 999999988765210 0001111222222211 1223467899999999998875433 1257899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.+|
T Consensus 265 ~vdGG 269 (277)
T 4fc7_A 265 VADGG 269 (277)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 99887
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-16 Score=163.88 Aligned_cols=210 Identities=15% Similarity=0.157 Sum_probs=140.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||||+||++++++|++. +.+|+++.|.. ++++++.+ .++. .....++.++.+|+
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~~~~----~~~~~~~~~~~~Dl 92 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQ--GLKVVGCARTV------GNIEELAA-----ECKS----AGYPGTLIPYRCDL 92 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHHH----TTCSSEEEEEECCT
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEECCh------HHHHHHHH-----HHHh----cCCCceEEEEEecC
Confidence 58999999999999999999999998 77899999863 22222211 1111 11124688999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHH----HHHHHHHHHHcCCc--c
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRG----TRDMLNLSKQMIHL--Q 198 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~G----T~~LLelA~~~~~l--k 198 (762)
++++ +++++++ .+|+|||+||.... .+.++..+++|+.| ++.+++.+++. +. .
T Consensus 93 ~~~~------~v~~~~~~~~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~-~~~~g 165 (279)
T 1xg5_A 93 SNEE------DILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKER-NVDDG 165 (279)
T ss_dssp TCHH------HHHHHHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCSC
T ss_pred CCHH------HHHHHHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCCc
Confidence 9865 5555544 79999999996532 23467789999999 67777777765 43 7
Q ss_pred EEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH------
Q psy7542 199 LFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME------ 272 (762)
Q Consensus 199 ~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~------ 272 (762)
+||++||..+.... |..+ ...|+.||+..|.+++..+.
T Consensus 166 ~iv~isS~~~~~~~----------~~~~--------------------------~~~Y~~sK~a~~~~~~~la~e~~~~~ 209 (279)
T 1xg5_A 166 HIININSMSGHRVL----------PLSV--------------------------THFYSATKYAVTALTEGLRQELREAQ 209 (279)
T ss_dssp EEEEECCGGGTSCC----------SCGG--------------------------GHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEcChhhcccC----------CCCC--------------------------CchhHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999998664211 0100 15799999998888776543
Q ss_pred cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 273 AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 273 ~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
.++++++++||.|.++.... ........+... .....++.++|+|++++.++..+.
T Consensus 210 ~~i~v~~v~Pg~v~t~~~~~------~~~~~~~~~~~~------------~~~~~~~~~~dvA~~i~~l~~~~~ 265 (279)
T 1xg5_A 210 THIRATCISPGVVETQFAFK------LHDKDPEKAAAT------------YEQMKCLKPEDVAEAVIYVLSTPA 265 (279)
T ss_dssp CCCEEEEEEESCBCSSHHHH------HTTTCHHHHHHH------------HC---CBCHHHHHHHHHHHHHSCT
T ss_pred CCeEEEEEecCcccchhhhh------hcccChhHHhhh------------cccccCCCHHHHHHHHHHHhcCCc
Confidence 27999999999886653100 000000001000 011246889999999999987654
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-16 Score=165.16 Aligned_cols=232 Identities=15% Similarity=0.086 Sum_probs=154.2
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
-++||+||||||+|+||++++++|++. +.+|+++.|.... ..+.+.+.+ .....++.++.+|
T Consensus 15 ~l~~k~~lVTGas~gIG~aia~~l~~~--G~~V~~~~~~~~~--~~~~~~~~~--------------~~~~~~~~~~~~D 76 (270)
T 3is3_A 15 RLDGKVALVTGSGRGIGAAVAVHLGRL--GAKVVVNYANSTK--DAEKVVSEI--------------KALGSDAIAIKAD 76 (270)
T ss_dssp CCTTCEEEESCTTSHHHHHHHHHHHHT--TCEEEEEESSCHH--HHHHHHHHH--------------HHTTCCEEEEECC
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEcCCCHH--HHHHHHHHH--------------HhcCCcEEEEEcC
Confidence 368999999999999999999999998 7788887775321 111221111 1124678999999
Q ss_pred cCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEE
Q psy7542 138 VAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVY 202 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~ 202 (762)
+++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++... ..-.++|+
T Consensus 77 v~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~ 150 (270)
T 3is3_A 77 IRQVP------EIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVL 150 (270)
T ss_dssp TTSHH------HHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEE
Confidence 99865 5555544 68999999997643 2456778999999999999998764 22348999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~ 278 (762)
+||..+... +.|. ...|+.||+..+.+.+..+.. |+++.
T Consensus 151 isS~~~~~~---------~~~~----------------------------~~~Y~asKaa~~~~~~~la~e~~~~gi~vn 193 (270)
T 3is3_A 151 TSSNTSKDF---------SVPK----------------------------HSLYSGSKGAVDSFVRIFSKDCGDKKITVN 193 (270)
T ss_dssp ECCTTTTTC---------CCTT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred EeCchhccC---------CCCC----------------------------CchhHHHHHHHHHHHHHHHHHhcccCeEEE
Confidence 999753110 0000 157999999999998877652 89999
Q ss_pred EEeeeeeccCCCCCCC-CCCCC--CCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 279 ILRPSIIIPIWKDPLP-GWTDN--INGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 279 IvRPs~V~G~~~eP~p-GWidn--~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
.++||.|.++...... .+... ............. ......+..++|+|++++.++...... ..+++
T Consensus 194 ~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~p~~r~~~p~dvA~~v~~L~s~~~~~--itG~~ 262 (270)
T 3is3_A 194 AVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAH---------ASPLHRNGWPQDVANVVGFLVSKEGEW--VNGKV 262 (270)
T ss_dssp EEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHH---------HSTTCSCBCHHHHHHHHHHHTSGGGTT--CCSCE
T ss_pred EEEeCCccChhhhhhhhhccccccccchHHHHHHHHh---------cCCCCCCCCHHHHHHHHHHHcCCccCC--ccCcE
Confidence 9999988765321000 00000 0011111111111 112234677999999999988654331 24789
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+++.+|
T Consensus 263 i~vdGG 268 (270)
T 3is3_A 263 LTLDGG 268 (270)
T ss_dssp EEESTT
T ss_pred EEeCCC
Confidence 999876
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.1e-16 Score=160.07 Aligned_cols=207 Identities=9% Similarity=0.028 Sum_probs=136.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|..... +.+.+.+ .....++.++.+|+
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~---~~~~~~~--------------~~~~~~~~~~~~Dv 65 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAE--GFTVFAGRRNGEKL---APLVAEI--------------EAAGGRIVARSLDA 65 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHT--TCEEEEEESSGGGG---HHHHHHH--------------HHTTCEEEEEECCT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHH---HHHHHHH--------------HhcCCeEEEEECcC
Confidence 47899999999999999999999999 77899999964321 1221111 11235789999999
Q ss_pred CCCCCCCCHHHHHhhcC------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLSE------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~ 202 (762)
++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+..+++++... .+..++|+
T Consensus 66 ~~~~------~v~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~ 139 (252)
T 3h7a_A 66 RNED------EVTAFLNAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFF 139 (252)
T ss_dssp TCHH------HHHHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCHH------HHHHHHHHHHhhCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 9875 5555554 68999999997542 2446778999999999998887431 13468999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE-
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC- 277 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv- 277 (762)
+||..+..... . ...|+.||+..+.+.+..+.. |+.+
T Consensus 140 isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gi~v~ 181 (252)
T 3h7a_A 140 TGATASLRGGS----------G----------------------------FAAFASAKFGLRAVAQSMARELMPKNIHVA 181 (252)
T ss_dssp EEEGGGTCCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ECCHHHcCCCC----------C----------------------------CccHHHHHHHHHHHHHHHHHHhhhcCCEEE
Confidence 99986543211 0 157999999999888877652 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
.++.||.|..+..... . ..... . ........ ++..+|+|++++.++..+..
T Consensus 182 n~v~PG~v~T~~~~~~-------~--~~~~~--------~-~~~~~~~~-~~~pedvA~~~~~l~s~~~~ 232 (252)
T 3h7a_A 182 HLIIDSGVDTAWVRER-------R--EQMFG--------K-DALANPDL-LMPPAAVAGAYWQLYQQPKS 232 (252)
T ss_dssp EEEEC----------------------------------------------CCHHHHHHHHHHHHHCCGG
T ss_pred EEecCCccCChhhhcc-------c--hhhhh--------h-hhhcCCcc-CCCHHHHHHHHHHHHhCchh
Confidence 8999998865432210 0 00000 0 00111123 88999999999999986544
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-16 Score=164.97 Aligned_cols=223 Identities=12% Similarity=0.078 Sum_probs=148.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|..... ++++++.+ .+ .....++.++.+|+
T Consensus 9 l~~k~vlVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~---~~~~~~~~-----~~------~~~~~~~~~~~~Dv 72 (262)
T 3ksu_A 9 LKNKVIVIAGGIKNLGALTAKTFALE--SVNLVLHYHQAKDS---DTANKLKD-----EL------EDQGAKVALYQSDL 72 (262)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHTTS--SCEEEEEESCGGGH---HHHHHHHH-----HH------HTTTCEEEEEECCC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEecCccCH---HHHHHHHH-----HH------HhcCCcEEEEECCC
Confidence 47899999999999999999999998 77889988865432 23332211 11 11235789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYV 203 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~v 203 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+..+++++... .+-.++|++
T Consensus 73 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~i 146 (262)
T 3ksu_A 73 SNEE------EVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITI 146 (262)
T ss_dssp CSHH------HHHHHHHHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEE
Confidence 9875 5655554 68999999997532 2446678999999999999999763 234689999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~I 279 (762)
||..+.... .....|+.||+..+.+.+..+.. |+.+..
T Consensus 147 sS~~~~~~~--------------------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~ 188 (262)
T 3ksu_A 147 ATSLLAAYT--------------------------------------GFYSTYAGNKAPVEHYTRAASKELMKQQISVNA 188 (262)
T ss_dssp CCCHHHHHH--------------------------------------CCCCC-----CHHHHHHHHHHHHTTTTTCEEEE
T ss_pred echhhccCC--------------------------------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 997543211 01157999999999999887763 899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
+.||.|..+... ...................+...+|+|++++.++.. .. -..++++++.
T Consensus 189 v~PG~v~T~~~~-----------------~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~~L~s~-~~--~itG~~i~vd 248 (262)
T 3ksu_A 189 IAPGPMDTSFFY-----------------GQETKESTAFHKSQAMGNQLTKIEDIAPIIKFLTTD-GW--WINGQTIFAN 248 (262)
T ss_dssp EEECCCCTHHHH-----------------TCC------------CCCCSCCGGGTHHHHHHHHTT-TT--TCCSCEEEES
T ss_pred EeeCCCcCcccc-----------------ccCchHHHHHHHhcCcccCCCCHHHHHHHHHHHcCC-CC--CccCCEEEEC
Confidence 999987543211 000000000111112233577889999999998876 32 1257899998
Q ss_pred CC
Q psy7542 360 AN 361 (762)
Q Consensus 360 s~ 361 (762)
++
T Consensus 249 Gg 250 (262)
T 3ksu_A 249 GG 250 (262)
T ss_dssp TT
T ss_pred CC
Confidence 87
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-16 Score=162.93 Aligned_cols=218 Identities=16% Similarity=0.106 Sum_probs=150.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|.. +++++..+ ....++.++.+|+
T Consensus 4 l~gk~vlVTGas~gIG~a~a~~l~~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~Dv 61 (247)
T 3rwb_A 4 LAGKTALVTGAAQGIGKAIAARLAAD--GATVIVSDINA------EGAKAAAA--------------SIGKKARAIAADI 61 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEECSCH------HHHHHHHH--------------HHCTTEEECCCCT
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH--------------HhCCceEEEEcCC
Confidence 58999999999999999999999998 77889988863 23333211 1135788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHH----HcCCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSK----QMIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~----~~~~lk~f 200 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++. +.+...++
T Consensus 62 ~~~~------~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~i 135 (247)
T 3rwb_A 62 SDPG------SVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRV 135 (247)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCHH------HHHHHHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEE
Confidence 9875 5555554 78999999997643 24567789999999999988853 33235799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... ....|+.||+..+.+.+..+. .|++
T Consensus 136 v~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~ 177 (247)
T 3rwb_A 136 ISIASNTFFAGTP--------------------------------------NMAAYVAAKGGVIGFTRALATELGKYNIT 177 (247)
T ss_dssp EEECCTHHHHTCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEECchhhccCCC--------------------------------------CchhhHHHHHHHHHHHHHHHHHhhhcCeE
Confidence 9999985432110 015799999988888877665 3899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+..++||.|..+..... +........... .....+...+|+|++++.++...... ..++++
T Consensus 178 vn~v~PG~v~t~~~~~~---------~~~~~~~~~~~~--------~~~~r~~~pedva~~v~~L~s~~~~~--itG~~i 238 (247)
T 3rwb_A 178 ANAVTPGLIESDGVKAS---------PHNEAFGFVEML--------QAMKGKGQPEHIADVVSFLASDDARW--ITGQTL 238 (247)
T ss_dssp EEEEEECSBCCHHHHTS---------GGGGGHHHHHHH--------SSSCSCBCHHHHHHHHHHHHSGGGTT--CCSCEE
T ss_pred EEEEeeCcCcCcccccc---------ChhHHHHHHhcc--------cccCCCcCHHHHHHHHHHHhCccccC--CCCCEE
Confidence 99999998865432110 000000000000 11123567899999999888765431 257899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.+|
T Consensus 239 ~vdGG 243 (247)
T 3rwb_A 239 NVDAG 243 (247)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 99877
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.6e-16 Score=163.51 Aligned_cols=225 Identities=18% Similarity=0.153 Sum_probs=152.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ .+.... ....++.++.+|+
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~~~~~~---~~~~~~~~~~~Dv 67 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQE--GANVTITGRSS------ERLEETRQ-----IILKSG---VSEKQVNSVVADV 67 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHHTTT---CCGGGEEEEECCT
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HHHHcC---CCCcceEEEEecC
Confidence 47899999999999999999999998 77899999863 22222211 111000 0012788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-----------cccHHHHHHHhHHHHHHHHHHHHHc---CCc
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-----------DDYMQTYVFLNTRGTRDMLNLSKQM---IHL 197 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-----------~~~l~~~~~~NV~GT~~LLelA~~~---~~l 197 (762)
++++ +++++++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+
T Consensus 68 ~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~- 140 (280)
T 1xkq_A 68 TTED------GQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK- 140 (280)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-
Confidence 9865 5555443 68999999996532 1346678999999999999988752 13
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----c
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----A 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~ 273 (762)
.++|++||..+..... |. ...|+.||+..|.+.+..+. .
T Consensus 141 g~iv~isS~~~~~~~~---------~~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~ 183 (280)
T 1xkq_A 141 GEIVNVSSIVAGPQAQ---------PD----------------------------FLYYAIAKAALDQYTRSTAIDLAKF 183 (280)
T ss_dssp CEEEEECCGGGSSSCC---------CS----------------------------SHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcEEEecCccccCCCC---------Cc----------------------------ccHHHHHHHHHHHHHHHHHHHhccC
Confidence 7999999986543210 00 15799999999999888764 2
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCch-------HHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc-
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPT-------GLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF- 345 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~-------~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~- 345 (762)
|+++++++||.|.++.... ...+. ......... .....+..++|+|++++.++...
T Consensus 184 gi~v~~v~PG~v~t~~~~~-------~~~~~~~~~~~~~~~~~~~~~---------~p~~~~~~pedvA~~v~~l~s~~~ 247 (280)
T 1xkq_A 184 GIRVNSVSPGMVETGFTNA-------MGMPDQASQKFYNFMASHKEC---------IPIGAAGKPEHIANIILFLADRNL 247 (280)
T ss_dssp TCEEEEEEECCBCSSHHHH-------TTCCHHHHHHHHHHHHHCTTT---------CTTSSCBCHHHHHHHHHHHHCHHH
T ss_pred CeEEEEEeeCcCcCCcccc-------cccccccccchHHHHHHHHcC---------CCCCCCCCHHHHHHHHHHhcCccc
Confidence 8999999999987763211 00000 011111111 11235789999999999988654
Q ss_pred cCCCCCCceEEEecCC
Q psy7542 346 LSNPGNTMRVINLTAN 361 (762)
Q Consensus 346 ~~~~~~~~~iyNi~s~ 361 (762)
... ..++++++.++
T Consensus 248 ~~~--~tG~~i~vdgG 261 (280)
T 1xkq_A 248 SFY--ILGQSIVADGG 261 (280)
T ss_dssp HTT--CCSCEEEESTT
T ss_pred ccC--ccCCeEEECCC
Confidence 221 14789999887
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-15 Score=155.61 Aligned_cols=214 Identities=17% Similarity=0.097 Sum_probs=149.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|+||||||+||++++++|++. +.+|+++.|.. ++++++.+ .. .+.++.+|+
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~--------------~~--~~~~~~~D~ 58 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKE--GARLVACDIEE------GPLREAAE--------------AV--GAHPVVMDV 58 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH--------------TT--TCEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH--------------Hc--CCEEEEecC
Confidence 47899999999999999999999998 77889999863 23333211 11 378899999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++++++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 59 ~~~~------~~~~~~~~~~~~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv 132 (245)
T 1uls_A 59 ADPA------SVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIV 132 (245)
T ss_dssp TCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9865 5555443 58999999997542 2456778999999999999888653 2457999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||.. .... |. ...|+.||+..+.+.+..+. .|+++
T Consensus 133 ~isS~~-~~~~----------~~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v 173 (245)
T 1uls_A 133 LTASRV-YLGN----------LG----------------------------QANYAASMAGVVGLTRTLALELGRWGIRV 173 (245)
T ss_dssp EECCGG-GGCC----------TT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEccch-hcCC----------CC----------------------------chhHHHHHHHHHHHHHHHHHHHhHhCeEE
Confidence 999976 2111 00 14799999998888877654 28999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
++++||.|..+... .. +........... ....++..+|+|++++.++...... ..+++++
T Consensus 174 ~~v~PG~v~t~~~~-------~~--~~~~~~~~~~~~---------p~~~~~~~~dvA~~v~~l~s~~~~~--~tG~~~~ 233 (245)
T 1uls_A 174 NTLAPGFIETRMTA-------KV--PEKVREKAIAAT---------PLGRAGKPLEVAYAALFLLSDESSF--ITGQVLF 233 (245)
T ss_dssp EEEEECSBCCTTTS-------SS--CHHHHHHHHHTC---------TTCSCBCHHHHHHHHHHHHSGGGTT--CCSCEEE
T ss_pred EEEEeCcCcCcchh-------hc--CHHHHHHHHhhC---------CCCCCcCHHHHHHHHHHHhCchhcC--CcCCEEE
Confidence 99999988665321 11 111212221111 1123789999999999988754321 1478898
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 234 vdgG 237 (245)
T 1uls_A 234 VDGG 237 (245)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8876
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=9.3e-16 Score=163.49 Aligned_cols=221 Identities=10% Similarity=0.037 Sum_probs=156.2
Q ss_pred cCCCEEEEECCCC--hhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGASG--FVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGATG--FLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
++||+||||||+| +||++++++|++. +.+|+++.|... ..++++++.+ ...++.++.+
T Consensus 28 l~~k~vlVTGasg~~GIG~~ia~~la~~--G~~V~~~~r~~~---~~~~~~~~~~---------------~~~~~~~~~~ 87 (296)
T 3k31_A 28 MEGKKGVIIGVANDKSLAWGIAKAVCAQ--GAEVALTYLSET---FKKRVDPLAE---------------SLGVKLTVPC 87 (296)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHHT--TCEEEEEESSGG---GHHHHHHHHH---------------HHTCCEEEEC
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHC--CCEEEEEeCChH---HHHHHHHHHH---------------hcCCeEEEEc
Confidence 5899999999998 9999999999998 778999999743 2333433321 1135688999
Q ss_pred ecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-----------cccHHHHHHHhHHHHHHHHHHHHHc-CCc
Q psy7542 137 DVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-----------DDYMQTYVFLNTRGTRDMLNLSKQM-IHL 197 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-----------~~~l~~~~~~NV~GT~~LLelA~~~-~~l 197 (762)
|+++++ +++++++ .+|++||+||.... .+.+...+++|+.|+.++++++... ..-
T Consensus 88 Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~ 161 (296)
T 3k31_A 88 DVSDAE------SVDNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNG 161 (296)
T ss_dssp CTTCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTC
T ss_pred CCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999875 5555543 68999999997532 2356778999999999999998763 223
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---- 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---- 273 (762)
.++|++||..+..... ....|+.||+..+.+.+..+..
T Consensus 162 g~IV~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~l~~~la~e~~~~ 203 (296)
T 3k31_A 162 GSILTLSYYGAEKVVP--------------------------------------HYNVMGVCKAALEASVKYLAVDLGKQ 203 (296)
T ss_dssp EEEEEEECGGGTSCCT--------------------------------------TTTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEehhhccCCC--------------------------------------CchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 5899999986543211 0157999999999998877653
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+++.+++||.|.++..... .............. ....+...+|+|++++.++..... ...+
T Consensus 204 gIrvn~v~PG~v~T~~~~~~-------~~~~~~~~~~~~~~---------p~~r~~~pedvA~~v~fL~s~~a~--~itG 265 (296)
T 3k31_A 204 QIRVNAISAGPVRTLASSGI-------SDFHYILTWNKYNS---------PLRRNTTLDDVGGAALYLLSDLGR--GTTG 265 (296)
T ss_dssp TEEEEEEEECCCCCSSCCSC-------HHHHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred CcEEEEEEECCCcCchhhcc-------cchHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHcCCccC--CccC
Confidence 89999999999877643211 11111111111111 123467789999999998876433 1257
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++++.+|
T Consensus 266 ~~i~vdGG 273 (296)
T 3k31_A 266 ETVHVDCG 273 (296)
T ss_dssp CEEEESTT
T ss_pred CEEEECCC
Confidence 89999887
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.2e-16 Score=159.95 Aligned_cols=209 Identities=12% Similarity=0.113 Sum_probs=147.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|+||||||+||++++++|++. +.+|+++.|.... ...+.++.+|+
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~~----------------------------~~~~~~~~~Dl 68 (253)
T 2nm0_A 19 HMSRSVLVTGGNRGIGLAIARAFADA--GDKVAITYRSGEP----------------------------PEGFLAVKCDI 68 (253)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSSCC----------------------------CTTSEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCChHh----------------------------hccceEEEecC
Confidence 57899999999999999999999998 6788999996432 12477899999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++++++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 69 ~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv 142 (253)
T 2nm0_A 69 TDTE------QVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVV 142 (253)
T ss_dssp TSHH------HHHHHHHHHHHHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9865 5555443 57999999997532 2457789999999999999887542 2457999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+..... . ...|+.||+..+.+.+..+.. |+++
T Consensus 143 ~isS~~~~~~~~-------------~-------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v 184 (253)
T 2nm0_A 143 LISSVVGLLGSA-------------G-------------------------QANYAASKAGLVGFARSLARELGSRNITF 184 (253)
T ss_dssp EECCCCCCCCHH-------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHCSSSEEE
T ss_pred EECchhhCCCCC-------------C-------------------------cHHHHHHHHHHHHHHHHHHHHhhhcCeEE
Confidence 999986542110 0 047999999999998877652 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
++++||.|..+..... ........... .....++..+|+|++++.++...... ..+++++
T Consensus 185 n~v~PG~v~T~~~~~~---------~~~~~~~~~~~---------~p~~~~~~p~dvA~~i~~l~s~~~~~--~tG~~i~ 244 (253)
T 2nm0_A 185 NVVAPGFVDTDMTKVL---------TDEQRANIVSQ---------VPLGRYARPEEIAATVRFLASDDASY--ITGAVIP 244 (253)
T ss_dssp EEEEECSBCC------------------CHHHHHTT---------CTTCSCBCHHHHHHHHHHHHSGGGTT--CCSCEEE
T ss_pred EEEEeCcCcCcchhhc---------CHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCccccC--CcCcEEE
Confidence 9999998865432110 00011111111 11134789999999999988764321 1478898
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.++
T Consensus 245 vdGG 248 (253)
T 2nm0_A 245 VDGG 248 (253)
T ss_dssp ESTT
T ss_pred ECCc
Confidence 8876
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-16 Score=161.23 Aligned_cols=219 Identities=12% Similarity=0.046 Sum_probs=150.6
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+||||||+|+||++++++|++. .+.+|++..|.... ...++.++.+|++
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~-~g~~v~~~~~~~~~---------------------------~~~~~~~~~~Dv~ 54 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQN-KNHTVINIDIQQSF---------------------------SAENLKFIKADLT 54 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTS-TTEEEEEEESSCCC---------------------------CCTTEEEEECCTT
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhc-CCcEEEEecccccc---------------------------ccccceEEecCcC
Confidence 6789999999999999999999984 26688888886531 1246789999999
Q ss_pred CCCCCCCHHHHHhhcC-----CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEEeCC
Q psy7542 140 VPDLGISAEDRQMLSE-----TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYVSTA 206 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~-----~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~vSSa 206 (762)
+++ +++.+++ .+|++||+||.... .+.++..+++|+.|+.++++++... ..-.++|++||.
T Consensus 55 ~~~------~v~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~ 128 (244)
T 4e4y_A 55 KQQ------DITNVLDIIKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSD 128 (244)
T ss_dssp CHH------HHHHHHHHTTTCCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCG
T ss_pred CHH------HHHHHHHHHHhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCH
Confidence 876 5555544 68999999997532 2456778999999999999998753 111489999998
Q ss_pred cccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEee
Q psy7542 207 YCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILRP 282 (762)
Q Consensus 207 y~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvRP 282 (762)
.+..... . ...|+.||+..+.+.+..+. .|+++++++|
T Consensus 129 ~~~~~~~----------~----------------------------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~P 170 (244)
T 4e4y_A 129 QCFIAKP----------N----------------------------SFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCP 170 (244)
T ss_dssp GGTCCCT----------T----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEE
T ss_pred HHccCCC----------C----------------------------CchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEec
Confidence 6543211 0 14799999999999988775 2899999999
Q ss_pred eeeccCCCCCCCC-CCCC-CCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 283 SIIIPIWKDPLPG-WTDN-INGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 283 s~V~G~~~eP~pG-Widn-~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
|.|.++....... +... ...+........ .......+..++|+|++++.++...... ..++++++.+
T Consensus 171 G~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~p~~r~~~p~dvA~~v~~l~s~~~~~--itG~~i~vdG 239 (244)
T 4e4y_A 171 GTVDTDLYRNLIQKYANNVGISFDEAQKQEE---------KEFPLNRIAQPQEIAELVIFLLSDKSKF--MTGGLIPIDG 239 (244)
T ss_dssp SCBCCHHHHHHHHHHHHHHTCCHHHHHHHHH---------TTSTTSSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEEST
T ss_pred CccCchhhHHHHHhhhhhcCCCHHHHHHHHh---------hcCCCCCCcCHHHHHHHHHHHhcCcccc--ccCCeEeECC
Confidence 9886542110000 0000 000000111111 1122345788999999999988755431 2478999987
Q ss_pred C
Q psy7542 361 N 361 (762)
Q Consensus 361 ~ 361 (762)
|
T Consensus 240 G 240 (244)
T 4e4y_A 240 G 240 (244)
T ss_dssp T
T ss_pred C
Confidence 7
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=161.18 Aligned_cols=204 Identities=14% Similarity=0.093 Sum_probs=138.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.+|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ ....++.++.+|+
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~Dv 83 (272)
T 4dyv_A 26 TGKKIAIVTGAGSGVGRAVAVALAGA--GYGVALAGRRL------DALQETAA--------------EIGDDALCVPTDV 83 (272)
T ss_dssp --CCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH--------------HHTSCCEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH--------------HhCCCeEEEEecC
Confidence 47899999999999999999999998 77889999863 33333221 1125788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc---CC--cc
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM---IH--LQ 198 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~---~~--lk 198 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+..+++++... .+ -.
T Consensus 84 ~d~~------~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g 157 (272)
T 4dyv_A 84 TDPD------SVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGG 157 (272)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCc
Confidence 9875 5665554 79999999997532 2346678999999999988877542 11 35
Q ss_pred EEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----C
Q psy7542 199 LFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----G 274 (762)
Q Consensus 199 ~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----g 274 (762)
++|++||..+..... ....|+.||+..+.+.+..+.. |
T Consensus 158 ~IV~isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~g 199 (272)
T 4dyv_A 158 RIINNGSISATSPRP--------------------------------------YSAPYTATKHAITGLTKSTSLDGRVHD 199 (272)
T ss_dssp EEEEECCSSTTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEEEECchhhcCCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHhCccC
Confidence 899999986643211 0157999999999998877652 8
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
+.+.+++||.|..+...... .+..... .......++.++|+|++++.++..+..
T Consensus 200 I~vn~v~PG~v~T~~~~~~~-----------------~~~~~~~--~~~~~~~~~~pedvA~~v~fL~s~~~~ 253 (272)
T 4dyv_A 200 IACGQIDIGNADTPMAQKMK-----------------AGVPQAD--LSIKVEPVMDVAHVASAVVYMASLPLD 253 (272)
T ss_dssp EEEEEEEEEECC-------------------------------------------CHHHHHHHHHHHHHSCTT
T ss_pred EEEEEEEECcccChhhhhhc-----------------ccchhhh--hcccccCCCCHHHHHHHHHHHhCCCCc
Confidence 99999999988765322110 0000000 001123478999999999999987654
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-15 Score=156.52 Aligned_cols=220 Identities=12% Similarity=0.146 Sum_probs=146.9
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|+||||||||+||++++++|++. +.+|+++.|.... +.+ .. .+..+.+|+++
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~--G~~V~~~~r~~~~------~~~-----------------~~--~~~~~~~D~~~ 54 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVAR--GYRVAIASRNPEE------AAQ-----------------SL--GAVPLPTDLEK 54 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCHH------HHH-----------------HH--TCEEEECCTTT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHH------HHH-----------------hh--CcEEEecCCch
Confidence 689999999999999999999998 6789999996421 111 01 26788999998
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEEeCCcccC
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVSTAYCHP 210 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vSSay~~~ 210 (762)
.++.--.+...+...++|++||+||.... .+.++..+++|+.|+.++++++... .+..++|++||..+..
T Consensus 55 ~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 134 (239)
T 2ekp_A 55 DDPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFT 134 (239)
T ss_dssp SCHHHHHHHHHHHHTSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcc
Confidence 22100001111223479999999997532 2356778999999999999888431 2567999999986643
Q ss_pred CCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEEEeeeeec
Q psy7542 211 KEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMILRPSIII 286 (762)
Q Consensus 211 ~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~IvRPs~V~ 286 (762)
... +.+ ...|+.||+..|.+.+..+.. |++++++|||.|.
T Consensus 135 ~~~-------~~~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~ 178 (239)
T 2ekp_A 135 AGG-------PVP-----------------------------IPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVE 178 (239)
T ss_dssp CCT-------TSC-----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC
T ss_pred CCC-------CCC-----------------------------CccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCcc
Confidence 220 001 157999999999998877653 8999999999887
Q ss_pred cCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 287 PIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 287 G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
++.... .............. .....+...+|+|++++.++..... ...++++++.++
T Consensus 179 t~~~~~-------~~~~~~~~~~~~~~---------~p~~~~~~~~dvA~~~~~l~s~~~~--~~tG~~~~vdgG 235 (239)
T 2ekp_A 179 TEFTLP-------LRQNPELYEPITAR---------IPMGRWARPEEIARVAAVLCGDEAE--YLTGQAVAVDGG 235 (239)
T ss_dssp SGGGHH-------HHTCHHHHHHHHTT---------CTTSSCBCHHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred Cchhhc-------cccCHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCchhc--CCCCCEEEECCC
Confidence 653210 00001111111111 1123478999999999998865432 114788888876
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.9e-16 Score=160.98 Aligned_cols=222 Identities=15% Similarity=0.084 Sum_probs=148.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.+||+||||||+|+||++++++|++. +.+|++..+.... ..+.+.+.+ .....++.++.+|+
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~--G~~Vv~~~~~~~~--~~~~~~~~~--------------~~~~~~~~~~~~Dl 86 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASD--GFTVVINYAGKAA--AAEEVAGKI--------------EAAGGKALTAQADV 86 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHH--TCEEEEEESSCSH--HHHHHHHHH--------------HHTTCCEEEEECCT
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEcCCCHH--HHHHHHHHH--------------HhcCCeEEEEEcCC
Confidence 47899999999999999999999999 7777777554321 122222211 11235789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYV 203 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~v 203 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++... ..-.++|++
T Consensus 87 ~~~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~i 160 (267)
T 3u5t_A 87 SDPA------AVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINM 160 (267)
T ss_dssp TCHH------HHHHHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEE
Confidence 9865 5555543 78999999997542 2346778999999999999888653 223589999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~I 279 (762)
||..+.... | ....|+.||+..+.+.+..+.. |+.+..
T Consensus 161 sS~~~~~~~----------~----------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~ 202 (267)
T 3u5t_A 161 STSQVGLLH----------P----------------------------SYGIYAAAKAGVEAMTHVLSKELRGRDITVNA 202 (267)
T ss_dssp CCTHHHHCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEE
T ss_pred eChhhccCC----------C----------------------------CchHHHHHHHHHHHHHHHHHHHhhhhCCEEEE
Confidence 997543211 0 0157999999999999888763 899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
+.||.|..+.... . ........... ......+..++|+|++++.++..... -..++++++.
T Consensus 203 v~PG~v~T~~~~~------~--~~~~~~~~~~~---------~~p~~r~~~pedvA~~v~~L~s~~~~--~itG~~i~vd 263 (267)
T 3u5t_A 203 VAPGPTATDLFLE------G--KSDEVRDRFAK---------LAPLERLGTPQDIAGAVAFLAGPDGA--WVNGQVLRAN 263 (267)
T ss_dssp EEECCBC-------------------CHHHHHT---------SSTTCSCBCHHHHHHHHHHHHSTTTT--TCCSEEEEES
T ss_pred EEECCCcCccccc------c--CCHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCcccc--CccCCEEEeC
Confidence 9999886553210 0 00111111111 11223577899999999998865433 1257899987
Q ss_pred CC
Q psy7542 360 AN 361 (762)
Q Consensus 360 s~ 361 (762)
+|
T Consensus 264 GG 265 (267)
T 3u5t_A 264 GG 265 (267)
T ss_dssp SS
T ss_pred CC
Confidence 76
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-15 Score=158.38 Aligned_cols=199 Identities=11% Similarity=0.061 Sum_probs=144.1
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
-+|+||||||+|+||++++++|++. +.+|+++.|..... .-..+.+|++
T Consensus 21 m~k~vlITGas~gIG~~la~~l~~~--G~~V~~~~r~~~~~-----------------------------~~~~~~~d~~ 69 (251)
T 3orf_A 21 MSKNILVLGGSGALGAEVVKFFKSK--SWNTISIDFRENPN-----------------------------ADHSFTIKDS 69 (251)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCCTT-----------------------------SSEEEECSCS
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCcccc-----------------------------cccceEEEeC
Confidence 3789999999999999999999998 77899999976431 1134677877
Q ss_pred CCCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEE
Q psy7542 140 VPDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYV 203 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~v 203 (762)
+++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... ..-.++|++
T Consensus 70 d~~------~v~~~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i 143 (251)
T 3orf_A 70 GEE------EIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLT 143 (251)
T ss_dssp SHH------HHHHHHHHHHTTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CHH------HHHHHHHHHHHHcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEE
Confidence 654 5554443 57999999996421 2346678999999999999999763 122489999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc------CCCE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA------GMPC 277 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~------glpv 277 (762)
||..+..... . ...|+.||+..|.+++..+.. |+++
T Consensus 144 sS~~~~~~~~----------~----------------------------~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v 185 (251)
T 3orf_A 144 GASAALNRTS----------G----------------------------MIAYGATKAATHHIIKDLASENGGLPAGSTS 185 (251)
T ss_dssp CCGGGGSCCT----------T----------------------------BHHHHHHHHHHHHHHHHHTSTTSSSCTTCEE
T ss_pred echhhccCCC----------C----------------------------CchhHHHHHHHHHHHHHHHHHhcccCCCcEE
Confidence 9986643211 0 157999999999999887653 7899
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhc-ccCCCCCCceEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWN-FLSNPGNTMRVI 356 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~-~~~~~~~~~~iy 356 (762)
.+++||.|.++. ...... ......+++++|+|++++.++.. ... ...++++
T Consensus 186 ~~v~PG~v~t~~-----------------~~~~~~---------~~~~~~~~~~~dva~~i~~l~~~~~~~--~~tG~~i 237 (251)
T 3orf_A 186 LGILPVTLDTPT-----------------NRKYMS---------DANFDDWTPLSEVAEKLFEWSTNSDSR--PTNGSLV 237 (251)
T ss_dssp EEEEESCBCCHH-----------------HHHHCT---------TSCGGGSBCHHHHHHHHHHHHHCGGGC--CCTTCEE
T ss_pred EEEecCcCcCcc-----------------hhhhcc---------cccccccCCHHHHHHHHHHHhcCcccc--CCcceEE
Confidence 999999775431 111111 12345688999999999999987 322 1257889
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.++
T Consensus 238 ~v~~g 242 (251)
T 3orf_A 238 KFETK 242 (251)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 88776
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=160.53 Aligned_cols=204 Identities=15% Similarity=0.107 Sum_probs=144.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.+|+||||||+|+||++++++|++. +.+|+++.|.. ++++++ ...++.++.+|+
T Consensus 14 ~~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~------~~~~~~-----------------~~~~~~~~~~Dv 68 (266)
T 3p19_A 14 SMKKLVVITGASSGIGEAIARRFSEE--GHPLLLLARRV------ERLKAL-----------------NLPNTLCAQVDV 68 (266)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHT--TCCEEEEESCH------HHHHTT-----------------CCTTEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHh-----------------hcCCceEEEecC
Confidence 47899999999999999999999999 67788998853 223221 124788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 69 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV 142 (266)
T 3p19_A 69 TDKY------TFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTII 142 (266)
T ss_dssp TCHH------HHHHHHHHHHHHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCHH------HHHHHHHHHHHHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEE
Confidence 9865 5555544 78999999997532 2456678999999999988776521 2457999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+..... . ...|+.||+..+.+.+..+.. |+++
T Consensus 143 ~isS~~~~~~~~----------~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v 184 (266)
T 3p19_A 143 NISSIAGKKTFP----------D----------------------------HAAYCGTKFAVHAISENVREEVAASNVRV 184 (266)
T ss_dssp EECCGGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred EEcChhhCCCCC----------C----------------------------CchHHHHHHHHHHHHHHHHHHhcccCcEE
Confidence 999986643211 0 157999999999888877653 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
++++||.|.++.... ... ........... .....++.++|+|++++.++..+..
T Consensus 185 n~v~PG~v~T~~~~~-------~~~-~~~~~~~~~~~--------~~~~r~~~pedvA~av~~l~~~~~~ 238 (266)
T 3p19_A 185 MTIAPSAVKTELLSH-------TTS-QQIKDGYDAWR--------VDMGGVLAADDVARAVLFAYQQPQN 238 (266)
T ss_dssp EEEEECSBSSSGGGG-------CSC-HHHHHHHHHHH--------HHTTCCBCHHHHHHHHHHHHHSCTT
T ss_pred EEEeeCccccchhhc-------ccc-hhhhHHHHhhc--------ccccCCCCHHHHHHHHHHHHcCCCC
Confidence 999999987764221 111 11111110000 0123478999999999999987654
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=7.2e-16 Score=162.11 Aligned_cols=227 Identities=13% Similarity=0.069 Sum_probs=151.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ ...++.++.+|+
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~---------------~~~~~~~~~~Dv 63 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNS--GARVVICDKDE------SGGRALEQ---------------ELPGAVFILCDV 63 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH---------------HCTTEEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH---------------HhcCCeEEEcCC
Confidence 57899999999999999999999998 67889998863 22222211 113578899999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV 201 (762)
++++ +++++++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 64 ~d~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv 137 (270)
T 1yde_A 64 TQED------DVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVI 137 (270)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEE
Confidence 9865 5555544 68999999997532 1346778999999999999998642 1237999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+.... |. ...|+.||+..|.+.+..+. .|+++
T Consensus 138 ~isS~~~~~~~----------~~----------------------------~~~Y~asKaa~~~~~~~la~e~~~~gi~v 179 (270)
T 1yde_A 138 NISSLVGAIGQ----------AQ----------------------------AVPYVATKGAVTAMTKALALDESPYGVRV 179 (270)
T ss_dssp EECCHHHHHCC----------TT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred EEcCccccCCC----------CC----------------------------CcccHHHHHHHHHHHHHHHHHhhhhCcEE
Confidence 99997542111 00 14799999999999988764 28999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
+++|||.|.++...... .....+...+...... .....+...+|+|++++.++... . ...+++++
T Consensus 180 n~v~Pg~v~t~~~~~~~---~~~~~~~~~~~~~~~~---------~p~~r~~~p~dva~~v~~L~s~~-~--~itG~~i~ 244 (270)
T 1yde_A 180 NCISPGNIWTPLWEELA---ALMPDPRASIREGMLA---------QPLGRMGQPAEVGAAAVFLASEA-N--FCTGIELL 244 (270)
T ss_dssp EEEEECSBCCHHHHHHH---TTSSSHHHHHHHHHHT---------STTSSCBCHHHHHHHHHHHHHHC-T--TCCSCEEE
T ss_pred EEEEeCccccchhhhhh---hcccchHHHHHHHhhc---------CCCCCCcCHHHHHHHHHHHcccC-C--CcCCCEEE
Confidence 99999998775311000 0000011111110010 01123678999999999887752 1 12578999
Q ss_pred ecCCCCCcccHH
Q psy7542 358 LTANKDFQITWY 369 (762)
Q Consensus 358 i~s~~~~piT~~ 369 (762)
+.++ ..+.+.
T Consensus 245 vdGG--~~~~~~ 254 (270)
T 1yde_A 245 VTGG--AELGYG 254 (270)
T ss_dssp ESTT--TTSCC-
T ss_pred ECCC--eecccC
Confidence 9887 444433
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-15 Score=155.41 Aligned_cols=223 Identities=14% Similarity=0.105 Sum_probs=151.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|+||||+|+||++++++|++. +.+|+++.+.... ..++..+++ .....++.++.+|+
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~--G~~v~~~~~~~~~-~~~~~~~~~---------------~~~~~~~~~~~~D~ 66 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLAND--GALVAIHYGNRKE-EAEETVYEI---------------QSNGGSAFSIGANL 66 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCSH-HHHHHHHHH---------------HHTTCEEEEEECCT
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHC--CCeEEEEeCCchH-HHHHHHHHH---------------HhcCCceEEEecCc
Confidence 57899999999999999999999998 6777776554321 111111111 11235788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-CCc
Q psy7542 139 AVPDLGISAEDRQMLSE-------------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-IHL 197 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~~l 197 (762)
++.+ +++.+++ .+|++||+||.... .+.++..+++|+.|+..+++++... .+-
T Consensus 67 ~~~~------~~~~~~~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~ 140 (255)
T 3icc_A 67 ESLH------GVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN 140 (255)
T ss_dssp TSHH------HHHHHHHHHHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE
T ss_pred CCHH------HHHHHHHHHHHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCC
Confidence 9865 4444332 38999999997532 1345678999999999999998753 223
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---- 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---- 273 (762)
.++|++||..+..... . ...|+.||+..+.+++..+..
T Consensus 141 ~~iv~isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~~~~~la~e~~~~ 182 (255)
T 3icc_A 141 SRIINISSAATRISLP----------D----------------------------FIAYSMTKGAINTMTFTLAKQLGAR 182 (255)
T ss_dssp EEEEEECCGGGTSCCT----------T----------------------------BHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CEEEEeCChhhccCCC----------C----------------------------cchhHHhHHHHHHHHHHHHHHHHhc
Confidence 5899999986543211 0 157999999999988877652
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+++..++||.|..+..... ............. .....+..++|+|++++.++..... ...+
T Consensus 183 gi~v~~v~PG~v~t~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~s~~~~--~~tG 244 (255)
T 3icc_A 183 GITVNAILPGFVKTDMNAEL-------LSDPMMKQYATTI---------SAFNRLGEVEDIADTAAFLASPDSR--WVTG 244 (255)
T ss_dssp TCEEEEEEECCBCCSSSTTT-------TTSHHHHHHHHHT---------STTSSCBCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred CeEEEEEEEeeecccchhhh-------cccHHHHHhhhcc---------CCcCCCCCHHHHHHHHHHHhCcccC--CccC
Confidence 89999999999877643321 1111111111111 1224577899999999988865432 1257
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++++.+|
T Consensus 245 ~~i~vdgG 252 (255)
T 3icc_A 245 QLIDVSGG 252 (255)
T ss_dssp CEEEESSS
T ss_pred CEEEecCC
Confidence 89999877
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-15 Score=162.28 Aligned_cols=226 Identities=16% Similarity=0.139 Sum_probs=153.5
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
.-++||+||||||+|+||++++++|++.|.+. +|++..|.. ++++++.+ .+... ....++.++.
T Consensus 29 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~------~~~~~~~~-----~l~~~----~~~~~~~~~~ 93 (287)
T 3rku_A 29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRL------EKLEELKK-----TIDQE----FPNAKVHVAQ 93 (287)
T ss_dssp HHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCH------HHHHHHHH-----HHHHH----CTTCEEEEEE
T ss_pred hhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCH------HHHHHHHH-----HHHhh----CCCCeEEEEE
Confidence 34689999999999999999999999985433 899999863 22322211 11111 1135789999
Q ss_pred eecCCCCCCCCHHHHHhhcC-------CccEEEEcccccC----c----cccHHHHHHHhHHHHHHHHHHHHHc---CCc
Q psy7542 136 GDVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVR----F----DDYMQTYVFLNTRGTRDMLNLSKQM---IHL 197 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~----f----~~~l~~~~~~NV~GT~~LLelA~~~---~~l 197 (762)
+|+++++ +++++++ .+|++||+||... + .+.++..+++|+.|+.++++++... .+.
T Consensus 94 ~Dv~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~ 167 (287)
T 3rku_A 94 LDITQAE------KIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNS 167 (287)
T ss_dssp CCTTCGG------GHHHHHHTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999987 5555443 5899999999653 1 2456789999999999999998421 245
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---- 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---- 273 (762)
.++|++||..+..... . ...|+.||+..+.+.+..+..
T Consensus 168 g~IV~isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~ 209 (287)
T 3rku_A 168 GDIVNLGSIAGRDAYP----------T----------------------------GSIYCASKFAVGAFTDSLRKELINT 209 (287)
T ss_dssp CEEEEECCGGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CeEEEECChhhcCCCC----------C----------------------------CchHHHHHHHHHHHHHHHHHHhhhc
Confidence 7999999986543211 0 157999999999999887763
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|++++.++||.|..+... ....+............ ..+..+|+|++++.++...... ..+
T Consensus 210 gIrvn~v~PG~v~T~~~~------~~~~~~~~~~~~~~~~~------------~p~~pedvA~~v~~l~s~~~~~--i~g 269 (287)
T 3rku_A 210 KIRVILIAPGLVETEFSL------VRYRGNEEQAKNVYKDT------------TPLMADDVADLIVYATSRKQNT--VIA 269 (287)
T ss_dssp SCEEEEEEESCEESSHHH------HHTTTCHHHHHHHHTTS------------CCEEHHHHHHHHHHHHTSCTTE--EEE
T ss_pred CCEEEEEeCCcCcCcccc------ccccCcHHHHHHhhccc------------CCCCHHHHHHHHHHHhCCCCCe--Eec
Confidence 899999999988664210 00001111111111111 1237899999999998765431 136
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++++..+
T Consensus 270 ~~i~v~~g 277 (287)
T 3rku_A 270 DTLIFPTN 277 (287)
T ss_dssp EEEEEETT
T ss_pred ceEEeeCC
Confidence 78888776
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=155.32 Aligned_cols=195 Identities=17% Similarity=0.131 Sum_probs=138.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ ....++.++.+|++
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~D~~ 59 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVER--GHQVSMMGRRY------QRLQQQEL--------------LLGNAVIGIVADLA 59 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH--------------HHGGGEEEEECCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH--------------HhcCCceEEECCCC
Confidence 5789999999999999999999998 77899999963 23333211 01136889999999
Q ss_pred CCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEEE
Q psy7542 140 VPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVYV 203 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~v 203 (762)
+++ +++++++ .+|++||+||.... .+.++..+++|+.|+..+++++... .+-.++|++
T Consensus 60 ~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~i 133 (235)
T 3l6e_A 60 HHE------DVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANV 133 (235)
T ss_dssp SHH------HHHHHHHHHHHHHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CHH------HHHHHHHHHHHhcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 865 5555443 68999999997532 2456778999999999999988542 112389999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~I 279 (762)
||..+..... . ...|+.||+..+.+.+..+.. |+.+..
T Consensus 134 sS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~ 175 (235)
T 3l6e_A 134 LSSAAQVGKA----------N----------------------------ESLYCASKWGMRGFLESLRAELKDSPLRLVN 175 (235)
T ss_dssp CCEECCSSCS----------S----------------------------HHHHHHHHHHHHHHHHHHHHHTTTSSEEEEE
T ss_pred eCHHhcCCCC----------C----------------------------CcHHHHHHHHHHHHHHHHHHHhhccCCEEEE
Confidence 9986543211 0 157999999999999888763 899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
++||.|-.+.... .. . .....++..+|+|++++.++..+..
T Consensus 176 v~PG~v~T~~~~~-------~~----------~----------~~~~~~~~pedvA~~v~~l~~~~~~ 216 (235)
T 3l6e_A 176 LYPSGIRSEFWDN-------TD----------H----------VDPSGFMTPEDAAAYMLDALEARSS 216 (235)
T ss_dssp EEEEEECCCC--------------------------------------CBCHHHHHHHHHHHTCCCSS
T ss_pred EeCCCccCcchhc-------cC----------C----------CCCcCCCCHHHHHHHHHHHHhCCCC
Confidence 9999885542110 00 0 0112578999999999999875543
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.7e-16 Score=163.06 Aligned_cols=235 Identities=11% Similarity=0.068 Sum_probs=153.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|... ++++..+ .+... ....++..+.+|+
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~--G~~V~~~~r~~~------~~~~~~~-----~l~~~----~~~~~~~~~~~D~ 70 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAE--GANVLINGRREE------NVNETIK-----EIRAQ----YPDAILQPVVADL 70 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSHH------HHHHHHH-----HHHHH----CTTCEEEEEECCT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH-----HHHhh----CCCceEEEEecCC
Confidence 47899999999999999999999998 778899998632 2222211 11111 1134678899999
Q ss_pred CCCCCCCCHHHHHhhc---CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEEeC
Q psy7542 139 AVPDLGISAEDRQMLS---ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVST 205 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~---~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vSS 205 (762)
++++ ++++++ ..+|++||+||.... .+.++..+++|+.|+..+++++... .+..++|++||
T Consensus 71 ~~~~------~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS 144 (267)
T 3t4x_A 71 GTEQ------GCQDVIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIAS 144 (267)
T ss_dssp TSHH------HHHHHHHHCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECC
T ss_pred CCHH------HHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 9865 455444 479999999997542 2456678999999988887766432 24579999999
Q ss_pred CcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEEEe
Q psy7542 206 AYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMILR 281 (762)
Q Consensus 206 ay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~IvR 281 (762)
..+..... . ...|+.||+..+.+.+..+.. |+.+..++
T Consensus 145 ~~~~~~~~----------~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~ 186 (267)
T 3t4x_A 145 EAAIMPSQ----------E----------------------------MAHYSATKTMQLSLSRSLAELTTGTNVTVNTIM 186 (267)
T ss_dssp GGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEE
T ss_pred hhhccCCC----------c----------------------------chHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 86543211 0 157999999999999888763 79999999
Q ss_pred eeeeccCCCCCCC-CCCCCC-CCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 282 PSIIIPIWKDPLP-GWTDNI-NGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 282 Ps~V~G~~~eP~p-GWidn~-~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
||.|.++...... ....+. ..+............ .......+..++|+|++++.++..... -..++++++.
T Consensus 187 PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~r~~~pedvA~~v~fL~s~~~~--~itG~~i~vd 259 (267)
T 3t4x_A 187 PGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENR-----PTSIIQRLIRPEEIAHLVTFLSSPLSS--AINGSALRID 259 (267)
T ss_dssp ECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHHC-----TTCSSCSCBCTHHHHHHHHHHHSGGGT--TCCSCEEEES
T ss_pred CCeecCccHHHHHhhcCcccCCCHHHHHHHHhhccC-----CcccccCccCHHHHHHHHHHHcCcccc--CccCCeEEEC
Confidence 9987654210000 000000 000111111111000 011234688999999999998875433 1257899998
Q ss_pred CC
Q psy7542 360 AN 361 (762)
Q Consensus 360 s~ 361 (762)
+|
T Consensus 260 GG 261 (267)
T 3t4x_A 260 GG 261 (267)
T ss_dssp TT
T ss_pred CC
Confidence 87
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-15 Score=155.21 Aligned_cols=214 Identities=15% Similarity=0.110 Sum_probs=148.9
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.++||+||||||+|+||++++++|++. +.+|+++.|.. +++++..+ .+.. ....++.++.+|
T Consensus 9 ~l~~k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~~~~-----~~~~~~~~~~~D 70 (252)
T 3f1l_A 9 LLNDRIILVTGASDGIGREAAMTYARY--GATVILLGRNE------EKLRQVAS-----HINE-----ETGRQPQWFILD 70 (252)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHHH-----HHSCCCEEEECC
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HHHh-----hcCCCceEEEEe
Confidence 468999999999999999999999998 77899999863 22322211 1111 112478899999
Q ss_pred c--CCCCCCCCHHHHHhhcC-------CccEEEEcccccC----c----cccHHHHHHHhHHHHHHHHHHHHHc---CCc
Q psy7542 138 V--AVPDLGISAEDRQMLSE-------TIHIVYHIAATVR----F----DDYMQTYVFLNTRGTRDMLNLSKQM---IHL 197 (762)
Q Consensus 138 l--~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~----f----~~~l~~~~~~NV~GT~~LLelA~~~---~~l 197 (762)
+ ++++ +++++++ .+|++||+||... + .+.++..+++|+.|+..+++++... .+.
T Consensus 71 ~~~~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~ 144 (252)
T 3f1l_A 71 LLTCTSE------NCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDA 144 (252)
T ss_dssp TTTCCHH------HHHHHHHHHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSS
T ss_pred cccCCHH------HHHHHHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCC
Confidence 9 6543 4544443 6899999999742 1 2345678999999999999988431 245
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---C
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---G 274 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---g 274 (762)
.++|++||..+..... . ...|+.||+..+.+.+..+.. .
T Consensus 145 g~iv~isS~~~~~~~~----------~----------------------------~~~Y~asK~a~~~l~~~la~e~~~~ 186 (252)
T 3f1l_A 145 GSLVFTSSSVGRQGRA----------N----------------------------WGAYAASKFATEGMMQVLADEYQQR 186 (252)
T ss_dssp CEEEEECCGGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CEEEEECChhhccCCC----------C----------------------------CchhHHHHHHHHHHHHHHHHHhcCC
Confidence 7999999986543211 0 157999999999999888774 4
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
+.+..+.||.|..+ +....... .....+...+|+|++++.++...... ..++
T Consensus 187 irvn~v~PG~v~t~-----------------~~~~~~~~---------~~~~~~~~p~dva~~~~~L~s~~~~~--itG~ 238 (252)
T 3f1l_A 187 LRVNCINPGGTRTA-----------------MRASAFPT---------EDPQKLKTPADIMPLYLWLMGDDSRR--KTGM 238 (252)
T ss_dssp CEEEEEECCSBSSH-----------------HHHHHCTT---------CCGGGSBCTGGGHHHHHHHHSGGGTT--CCSC
T ss_pred cEEEEEecCcccCc-----------------hhhhhCCc---------cchhccCCHHHHHHHHHHHcCccccC--CCCC
Confidence 78888888766432 11111111 11234677899999999888765431 2578
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
++++.+|
T Consensus 239 ~i~vdgG 245 (252)
T 3f1l_A 239 TFDAQPG 245 (252)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9999888
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-15 Score=154.09 Aligned_cols=213 Identities=14% Similarity=0.113 Sum_probs=142.9
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ ....++.++.+|++++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~Dv~~~ 58 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQ--GHKVIATGRRQ------ERLQELKD--------------ELGDNLYIAQLDVRNR 58 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH--------------HHCTTEEEEECCTTCH
T ss_pred CEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH--------------HhcCceEEEEcCCCCH
Confidence 57999999999999999999998 77889999863 23332211 1124788999999986
Q ss_pred CCCCCHHHHHhhcC-------CccEEEEcccccC----c----cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEE
Q psy7542 142 DLGISAEDRQMLSE-------TIHIVYHIAATVR----F----DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYV 203 (762)
Q Consensus 142 ~LGLs~~~l~~l~~-------~vDiViH~AA~v~----f----~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~v 203 (762)
+ +++++++ .+|++||+||... + .+.++..+++|+.|+.++++++... .+..++|++
T Consensus 59 ~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~i 132 (248)
T 3asu_A 59 A------AIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINI 132 (248)
T ss_dssp H------HHHHHHHTSCTTTCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred H------HHHHHHHHHHHhCCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 5 5665543 6899999999652 1 1346778999999999999888631 245799999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~I 279 (762)
||..+.... |. ...|+.||+..+.+.+..+.. |+++++
T Consensus 133 sS~~~~~~~----------~~----------------------------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~ 174 (248)
T 3asu_A 133 GSTAGSWPY----------AG----------------------------GNVYGATKAFVRQFSLNLRTDLHGTAVRVTD 174 (248)
T ss_dssp CCGGGTSCC----------TT----------------------------CHHHHHHHHHHHHHHHHHHHHTTTSCCEEEE
T ss_pred ccchhccCC----------CC----------------------------CchHHHHHHHHHHHHHHHHHHhhhcCcEEEE
Confidence 998654321 00 157999999999999887652 899999
Q ss_pred Eeeeeecc-CCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 280 LRPSIIIP-IWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 280 vRPs~V~G-~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
++||.|.| +.... ...+..... .... .....+..+|+|++++.++...... .+....+
T Consensus 175 v~PG~v~gT~~~~~------~~~~~~~~~--------~~~~----~~~~~~~p~dvA~~v~~l~s~~~~~---~g~~i~v 233 (248)
T 3asu_A 175 IEPGLVGGTEFSNV------RFKGDDGKA--------EKTY----QNTVALTPEDVSEAVWWVSTLPAHV---NINTLEM 233 (248)
T ss_dssp EEECSBCC----------------------------------------CCBCHHHHHHHHHHHHHSCTTC---CCCEEEE
T ss_pred EeccccccCcchhh------cccCchHHH--------HHHH----hccCCCCHHHHHHHHHHHhcCCccc---eeeEEEE
Confidence 99999874 32110 000000000 0000 0112468999999999998864331 3556666
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
...
T Consensus 234 ~~~ 236 (248)
T 3asu_A 234 MPV 236 (248)
T ss_dssp CCT
T ss_pred ccc
Confidence 543
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=158.06 Aligned_cols=212 Identities=17% Similarity=0.158 Sum_probs=130.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++ +.+|+++.|.. ++++++.+ ..++.++.+|+
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~---g~~v~~~~r~~------~~~~~~~~----------------~~~~~~~~~D~ 57 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR---DHIVYALGRNP------EHLAALAE----------------IEGVEPIESDI 57 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT---TSEEEEEESCH------HHHHHHHT----------------STTEEEEECCH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC---CCeEEEEeCCH------HHHHHHHh----------------hcCCcceeccc
Confidence 4689999999999999999999975 45788888853 23333211 24688899999
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEEEeCCccc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVYVSTAYCH 209 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~vSSay~~ 209 (762)
+++..--...+...-...+|+|||+||.... .+.++..+++|+.|+.++++++... .+-.++|++||..+.
T Consensus 58 ~~~~~~~~~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~ 137 (245)
T 3e9n_A 58 VKEVLEEGGVDKLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGN 137 (245)
T ss_dssp HHHHHTSSSCGGGTTCSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC-----
T ss_pred chHHHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCcccc
Confidence 8753100000111112468999999997642 1345678999999988888877532 111689999998654
Q ss_pred CCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEeeeee
Q psy7542 210 PKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILRPSII 285 (762)
Q Consensus 210 ~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvRPs~V 285 (762)
.... ....|+.||+..|.+++..+. .|+++++++||.|
T Consensus 138 ~~~~--------------------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v 179 (245)
T 3e9n_A 138 GPHP--------------------------------------GNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPT 179 (245)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC
T ss_pred cCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCc
Confidence 3211 015799999999999988766 2899999999988
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 286 IPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 286 ~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
.++...... ... +.......++.++|+|++++.++..... +.++|+.-
T Consensus 180 ~t~~~~~~~-------------~~~---------~~~~~~~~~~~p~dvA~~i~~l~~~~~~-----~~~~~i~~ 227 (245)
T 3e9n_A 180 NTPMLQGLM-------------DSQ---------GTNFRPEIYIEPKEIANAIRFVIDAGET-----TQITNVDV 227 (245)
T ss_dssp --------------------------------------CCGGGSCHHHHHHHHHHHHTSCTT-----EEEEEEEE
T ss_pred cCchhhhhh-------------hhh---------hcccccccCCCHHHHHHHHHHHHcCCCc-----cceeeeEE
Confidence 765322110 000 0111224578999999999999987654 67888753
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-15 Score=155.55 Aligned_cols=233 Identities=12% Similarity=0.003 Sum_probs=153.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.. +++++..+ .+... ....++.++.+|+
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~l~~~----~~~~~~~~~~~Dv 68 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEA--GAAVAFCARDG------ERLRAAES-----ALRQR----FPGARLFASVCDV 68 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHHHH----STTCCEEEEECCT
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HHHHh----cCCceEEEEeCCC
Confidence 47899999999999999999999998 77889999863 22222211 11110 1123589999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++.++ ..+|++||+||.... .+.++..+++|+.|+.++++++... .+-.++|
T Consensus 69 ~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv 142 (265)
T 3lf2_A 69 LDAL------QVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIV 142 (265)
T ss_dssp TCHH------HHHHHHHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEE
Confidence 9865 455444 368999999997542 2456778999999999999998642 2346899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+..... . ...|+.||+..+.+.+..+.. |+++
T Consensus 143 ~isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gi~v 184 (265)
T 3lf2_A 143 CVNSLLASQPEP----------H----------------------------MVATSAARAGVKNLVRSMAFEFAPKGVRV 184 (265)
T ss_dssp EEEEGGGTSCCT----------T----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECCcccCCCCC----------C----------------------------chhhHHHHHHHHHHHHHHHHHhcccCeEE
Confidence 999986543211 0 157999999999988877653 8999
Q ss_pred EEEeeeeeccCCCCCCCCC-CCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 278 MILRPSIIIPIWKDPLPGW-TDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGW-idn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
..++||.|.++........ .+....+..+....... .......+...+|+|++++.++...... ..++++
T Consensus 185 n~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~p~~r~~~pedvA~~v~fL~s~~~~~--itG~~i 255 (265)
T 3lf2_A 185 NGILIGLVESGQWRRRFEAREERELDWAQWTAQLARN-------KQIPLGRLGKPIEAARAILFLASPLSAY--TTGSHI 255 (265)
T ss_dssp EEEEECSBCCHHHHHHHTC------CHHHHHHHHHHH-------TTCTTCSCBCHHHHHHHHHHHHSGGGTT--CCSEEE
T ss_pred EEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhc-------cCCCcCCCcCHHHHHHHHHHHhCchhcC--cCCCEE
Confidence 9999998865421100000 00000011111111100 0011234778999999999988754431 257899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.+|
T Consensus 256 ~vdGG 260 (265)
T 3lf2_A 256 DVSGG 260 (265)
T ss_dssp EESSS
T ss_pred EECCC
Confidence 99877
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-15 Score=155.74 Aligned_cols=202 Identities=9% Similarity=0.041 Sum_probs=144.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.++|+||||||+|+||++++++|++. +.+|+++.|..... ......+.+|+
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~---------------------------~~~~~~~~~D~ 55 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRAR--NWWVASIDVVENEE---------------------------ASASVIVKMTD 55 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTT--TCEEEEEESSCCTT---------------------------SSEEEECCCCS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhC--CCEEEEEeCChhhc---------------------------cCCcEEEEcCC
Confidence 36899999999999999999999998 77899999975421 12356778999
Q ss_pred CCCCCCCCHHHHHhhc---------CCccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS---------ETIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~---------~~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~f 200 (762)
++++ ++++++ ..+|+|||+||.... .+.++..+++|+.|+..+++++... ..-.++
T Consensus 56 ~~~~------~v~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~i 129 (241)
T 1dhr_A 56 SFTE------QADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLL 129 (241)
T ss_dssp CHHH------HHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEE
Confidence 8765 455444 379999999996531 1345678999999999999998763 112589
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc------C
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA------G 274 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~------g 274 (762)
|++||..+..... . ...|+.||+..+.+++..+.. |
T Consensus 130 v~isS~~~~~~~~----------~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~~~g 171 (241)
T 1dhr_A 130 TLAGAKAALDGTP----------G----------------------------MIGYGMAKGAVHQLCQSLAGKNSGMPSG 171 (241)
T ss_dssp EEECCGGGGSCCT----------T----------------------------BHHHHHHHHHHHHHHHHHTSTTSSCCTT
T ss_pred EEECCHHHccCCC----------C----------------------------chHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 9999986543210 0 157999999999999887642 6
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
+++++++||.|-.+. ....... .....++|.+|+|++++.++..... ...++
T Consensus 172 i~v~~v~PG~v~T~~-----------------~~~~~~~---------~~~~~~~~~~~vA~~v~~l~~~~~~--~~~G~ 223 (241)
T 1dhr_A 172 AAAIAVLPVTLDTPM-----------------NRKSMPE---------ADFSSWTPLEFLVETFHDWITGNKR--PNSGS 223 (241)
T ss_dssp CEEEEEEESCEECHH-----------------HHHHSTT---------SCGGGSEEHHHHHHHHHHHHTTTTC--CCTTC
T ss_pred eEEEEEecCcccCcc-----------------ccccCcc---------hhhccCCCHHHHHHHHHHHhcCCCc--Cccce
Confidence 999999999764331 1111110 1123468899999999988865432 12477
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
++++.++
T Consensus 224 ~~~v~g~ 230 (241)
T 1dhr_A 224 LIQVVTT 230 (241)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 8888765
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=155.61 Aligned_cols=202 Identities=8% Similarity=-0.025 Sum_probs=144.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.. . +|+
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~--G~~V~~~~r~~----------------------------~---------~D~ 44 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESE--HTIVHVASRQT----------------------------G---------LDI 44 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCST--TEEEEEESGGG----------------------------T---------CCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEecCCc----------------------------c---------cCC
Confidence 47899999999999999999999988 77888888742 1 688
Q ss_pred CCCCCCCCHHHHHhhc---CCccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEEeCC
Q psy7542 139 AVPDLGISAEDRQMLS---ETIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYVSTA 206 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~---~~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~vSSa 206 (762)
++++ ++++++ ..+|++||+||.... .+.++..+++|+.|+.++++++... ..-.++|++||.
T Consensus 45 ~~~~------~v~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~ 118 (223)
T 3uce_A 45 SDEK------SVYHYFETIGAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGM 118 (223)
T ss_dssp TCHH------HHHHHHHHHCSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred CCHH------HHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecch
Confidence 7765 555554 478999999997621 2446678999999999999999763 222489999998
Q ss_pred cccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--CCCEEEEeeee
Q psy7542 207 YCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--GMPCMILRPSI 284 (762)
Q Consensus 207 y~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--glpv~IvRPs~ 284 (762)
.+..... . ...|+.||+..|.+.+..+.. .+++..++||.
T Consensus 119 ~~~~~~~----------~----------------------------~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~ 160 (223)
T 3uce_A 119 LSRKVVA----------N----------------------------TYVKAAINAAIEATTKVLAKELAPIRVNAISPGL 160 (223)
T ss_dssp GGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEECS
T ss_pred hhccCCC----------C----------------------------chHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCC
Confidence 6543211 0 157999999999999988775 49999999998
Q ss_pred eccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 285 IIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 285 V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
|.++...... . .....+......+ .....+..++|+|++++.++..... .++++++.++
T Consensus 161 v~t~~~~~~~---~--~~~~~~~~~~~~~---------~~~~~~~~~~dvA~~~~~l~~~~~~----tG~~i~vdgG 219 (223)
T 3uce_A 161 TKTEAYKGMN---A--DDRDAMYQRTQSH---------LPVGKVGEASDIAMAYLFAIQNSYM----TGTVIDVDGG 219 (223)
T ss_dssp BCSGGGTTSC---H--HHHHHHHHHHHHH---------STTCSCBCHHHHHHHHHHHHHCTTC----CSCEEEESTT
T ss_pred Ccchhhhhcc---h--hhHHHHHHHHhhc---------CCCCCccCHHHHHHHHHHHccCCCC----CCcEEEecCC
Confidence 8766432110 0 0001111111111 1224578899999999999875443 5889999887
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=158.91 Aligned_cols=224 Identities=15% Similarity=0.077 Sum_probs=151.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|..... ++..+++ .....++..+.+|+
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~--~~~~~~~---------------~~~~~~~~~~~~Dv 91 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGA--GAHVILHGVKPGST--AAVQQRI---------------IASGGTAQELAGDL 91 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSTTTT--HHHHHHH---------------HHTTCCEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEcCCHHHH--HHHHHHH---------------HhcCCeEEEEEecC
Confidence 68999999999999999999999999 77899999965432 1111111 11236789999999
Q ss_pred CCCCCCCCHHHHHhhcC------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLSE------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~ 202 (762)
++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+..++|+
T Consensus 92 ~~~~------~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~ 165 (275)
T 4imr_A 92 SEAG------AGTDLIERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVS 165 (275)
T ss_dssp TSTT------HHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 9987 4444443 78999999996432 2456678999999999999988431 24579999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~ 278 (762)
+||..+..... ....|+.||+..+.+++..+.. |+++.
T Consensus 166 isS~~~~~~~~--------------------------------------~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn 207 (275)
T 4imr_A 166 IGSINQLRPKS--------------------------------------VVTAYAATKAAQHNLIQSQARDFAGDNVLLN 207 (275)
T ss_dssp ECCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred ECCHHhCCCCC--------------------------------------CchhhHHHHHHHHHHHHHHHHHhcccCcEEE
Confidence 99986543110 0146999999999988877663 89999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
.++||.|..+...... ...+ .......... .....+...+|+|++++.++...... ..++++++
T Consensus 208 ~v~PG~v~T~~~~~~~-----~~~~-~~~~~~~~~~--------~p~~r~~~pedvA~~v~fL~s~~a~~--itG~~i~v 271 (275)
T 4imr_A 208 TLAPGLVDTDRNADRR-----AQDP-EGWDEYVRTL--------NWMGRAGRPEEMVGAALFLASEACSF--MTGETIFL 271 (275)
T ss_dssp EEEESSBCSHHHHHHH-----HHCH-HHHHHHHHHH--------STTCSCBCGGGGHHHHHHHHSGGGTT--CCSCEEEE
T ss_pred EEEeccccCccccccc-----ccCh-HHHHHHHhhc--------CccCCCcCHHHHHHHHHHHcCcccCC--CCCCEEEe
Confidence 9999987554210000 0000 0111111100 01123567889999999988765431 24788988
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.+|
T Consensus 272 dGG 274 (275)
T 4imr_A 272 TGG 274 (275)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=3.8e-15 Score=157.43 Aligned_cols=201 Identities=12% Similarity=0.061 Sum_probs=139.2
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.++||+||||||||+||++++++|++. +.+|+++.|.. ++++++.+ .++. ....++.++.+|
T Consensus 25 ~~~~k~vlITGasggIG~~la~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~~~~-----~~~~~~~~~~~D 86 (286)
T 1xu9_A 25 MLQGKKVIVTGASKGIGREMAYHLAKM--GAHVVVTARSK------ETLQKVVS-----HCLE-----LGAASAHYIAGT 86 (286)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHHH-----HTCSEEEEEECC
T ss_pred hcCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HHHH-----hCCCceEEEeCC
Confidence 368999999999999999999999998 67899999963 22322211 1111 112368899999
Q ss_pred cCCCCCCCCHHHHHhhc-------CCccEEEEcc-cccCc------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEE
Q psy7542 138 VAVPDLGISAEDRQMLS-------ETIHIVYHIA-ATVRF------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFV 201 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~-------~~vDiViH~A-A~v~f------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV 201 (762)
+++++ +++.++ .++|+|||+| +.... .+.++..+++|+.|+.++++++... .+..++|
T Consensus 87 l~d~~------~v~~~~~~~~~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv 160 (286)
T 1xu9_A 87 MEDMT------FAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIV 160 (286)
T ss_dssp TTCHH------HHHHHHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEE
Confidence 99865 454444 3799999994 54321 2345678999999999999988643 1236999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH-----c-CC
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME-----A-GM 275 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~-----~-gl 275 (762)
++||..+..... + ...|+.||+..|.+++..+. . ++
T Consensus 161 ~isS~~~~~~~~---------~-----------------------------~~~Y~asK~a~~~~~~~l~~e~~~~~~~i 202 (286)
T 1xu9_A 161 VVSSLAGKVAYP---------M-----------------------------VAAYSASKFALDGFFSSIRKEYSVSRVNV 202 (286)
T ss_dssp EEEEGGGTSCCT---------T-----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred EECCcccccCCC---------C-----------------------------ccHHHHHHHHHHHHHHHHHHHHhhcCCCe
Confidence 999986543210 0 15799999999988876543 2 89
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
.+++++||.|.++ +......+ ......++.+|+|++++.++....
T Consensus 203 ~v~~v~Pg~v~t~-----------------~~~~~~~~---------~~~~~~~~~~~vA~~i~~~~~~~~ 247 (286)
T 1xu9_A 203 SITLCVLGLIDTE-----------------TAMKAVSG---------IVHMQAAPKEECALEIIKGGALRQ 247 (286)
T ss_dssp EEEEEEECCBCCH-----------------HHHHHSCG---------GGGGGCBCHHHHHHHHHHHHHTTC
T ss_pred EEEEeecCccCCh-----------------hHHHhccc---------cccCCCCCHHHHHHHHHHHHhcCC
Confidence 9999999976432 11111111 122457899999999999887654
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-15 Score=171.79 Aligned_cols=225 Identities=15% Similarity=0.153 Sum_probs=155.8
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
.+..+++||||||||+||.+++++|++. +. +|+++.|+.......+++.+.+ .....++.++.
T Consensus 222 ~~~~~~~vLITGgtGgIG~~la~~La~~--G~~~vvl~~R~~~~~~~~~~l~~~l--------------~~~g~~v~~~~ 285 (486)
T 2fr1_A 222 EWKPTGTVLVTGGTGGVGGQIARWLARR--GAPHLLLVSRSGPDADGAGELVAEL--------------EALGARTTVAA 285 (486)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHH--TCSEEEEEESSGGGSTTHHHHHHHH--------------HHTTCEEEEEE
T ss_pred CcCCCCEEEEECCCCHHHHHHHHHHHHc--CCCEEEEEcCCCCCcHHHHHHHHHH--------------HhcCCEEEEEE
Confidence 3557899999999999999999999998 66 6899999764322222222111 11235789999
Q ss_pred eecCCCCCCCCHHHHHhhcCC------ccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEE
Q psy7542 136 GDVAVPDLGISAEDRQMLSET------IHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVY 202 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l~~~------vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~ 202 (762)
+|+++++ ++..++++ +|+|||+|+.... .+.+...+++|+.|+.+++++++.. ++++||+
T Consensus 286 ~Dv~d~~------~v~~~~~~i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~-~~~~~V~ 358 (486)
T 2fr1_A 286 CDVTDRE------SVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVL 358 (486)
T ss_dssp CCTTCHH------HHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEE
T ss_pred eCCCCHH------HHHHHHHHHHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcC-CCCEEEE
Confidence 9999865 67766655 4999999997643 1345668889999999999999886 7899999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEee
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRP 282 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRP 282 (762)
+||..+..... ....|+.+|+..+.+..+....|+++++++|
T Consensus 359 ~SS~a~~~g~~--------------------------------------g~~~Yaaaka~l~~la~~~~~~gi~v~~i~p 400 (486)
T 2fr1_A 359 FSSFASAFGAP--------------------------------------GLGGYAPGNAYLDGLAQQRRSDGLPATAVAW 400 (486)
T ss_dssp EEEHHHHTCCT--------------------------------------TCTTTHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EcChHhcCCCC--------------------------------------CCHHHHHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 99974422110 0157999999999998877666999999999
Q ss_pred eeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCC
Q psy7542 283 SIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANK 362 (762)
Q Consensus 283 s~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~ 362 (762)
|.+.+... ...... ..+ .......++.+++++++..++..... . +.+
T Consensus 401 G~~~~~gm----------------~~~~~~---~~~---~~~g~~~i~~e~~a~~l~~~l~~~~~------~-~~v---- 447 (486)
T 2fr1_A 401 GTWAGSGM----------------AEGPVA---DRF---RRHGVIEMPPETACRALQNALDRAEV------C-PIV---- 447 (486)
T ss_dssp CCBC-------------------------------C---TTTTEECBCHHHHHHHHHHHHHTTCS------S-CEE----
T ss_pred CeeCCCcc----------------cchhHH---HHH---HhcCCCCCCHHHHHHHHHHHHhCCCC------e-EEE----
Confidence 97755310 000000 000 11224679999999999999876543 1 222
Q ss_pred CCcccHHHHHHHHH
Q psy7542 363 DFQITWYDIIENGK 376 (762)
Q Consensus 363 ~~piT~~el~~~i~ 376 (762)
.++.|..+...+.
T Consensus 448 -~~~d~~~~~~~~~ 460 (486)
T 2fr1_A 448 -IDVRWDRFLLAYT 460 (486)
T ss_dssp -CEECHHHHHHHHT
T ss_pred -EeCCHHHHhhhhc
Confidence 2367877766543
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-15 Score=157.44 Aligned_cols=207 Identities=14% Similarity=0.111 Sum_probs=140.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.+|+||||||+|+||++++++|++. |.+|+++.|.. ++++++.+ .+ .....++.++.+|+
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~------~~~~~~~~-----~l------~~~~~~~~~~~~Dv 62 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVA--GAKILLGARRQ------ARIEAIAT-----EI------RDAGGTALAQVLDV 62 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSH------HHHHHHHH-----HH------HHTTCEEEEEECCT
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HH------HhcCCcEEEEEcCC
Confidence 46899999999999999999999998 77889999863 22322211 11 11235788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+..+++++... .+..++|
T Consensus 63 ~d~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV 136 (264)
T 3tfo_A 63 TDRH------SVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQII 136 (264)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEE
Confidence 9875 5555443 78999999997642 2456778999999999988887542 2457999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--CCCEEE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--GMPCMI 279 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--glpv~I 279 (762)
++||..+..... . ...|+.||+..+.+.+..+.. |+++..
T Consensus 137 ~isS~~~~~~~~----------~----------------------------~~~Y~asKaal~~l~~~la~e~~gIrvn~ 178 (264)
T 3tfo_A 137 NIGSIGALSVVP----------T----------------------------AAVYCATKFAVRAISDGLRQESTNIRVTC 178 (264)
T ss_dssp EECCGGGTCCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHCSSEEEEE
T ss_pred EEcCHHHcccCC----------C----------------------------ChhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 999986643211 0 147999999999999887765 899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
++||.|..+..... .... . ..... .........+|+|++++.++.....
T Consensus 179 v~PG~v~T~~~~~~-------~~~~-~-----~~~~~------~~~~~~~~pedvA~~v~~l~s~~~~ 227 (264)
T 3tfo_A 179 VNPGVVESELAGTI-------THEE-T-----MAAMD------TYRAIALQPADIARAVRQVIEAPQS 227 (264)
T ss_dssp EEECCC------------------------------------------CCCHHHHHHHHHHHHHSCTT
T ss_pred EecCCCcCcccccc-------cchh-H-----HHHHH------hhhccCCCHHHHHHHHHHHhcCCcc
Confidence 99998865432110 0000 0 00000 0011246899999999999987654
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.6e-15 Score=157.02 Aligned_cols=208 Identities=14% Similarity=0.079 Sum_probs=139.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|... +++++.+ .+... ....+.++.+|+
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~------~~~~~~~-----~~~~~-----~~~~~~~~~~Dv 92 (281)
T 4dry_A 31 GEGRIALVTGGGTGVGRGIAQALSAE--GYSVVITGRRPD------VLDAAAG-----EIGGR-----TGNIVRAVVCDV 92 (281)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHH------HHHHHHH-----HHHHH-----HSSCEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHH------HHHHHHH-----HHHhc-----CCCeEEEEEcCC
Confidence 58999999999999999999999998 778999998642 2222211 11111 123468999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc----C-Ccc
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM----I-HLQ 198 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~----~-~lk 198 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+..+++++... + +-.
T Consensus 93 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g 166 (281)
T 4dry_A 93 GDPD------QVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGG 166 (281)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCc
Confidence 9876 5555543 67999999997532 2456679999999998888877542 1 136
Q ss_pred EEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cC
Q psy7542 199 LFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AG 274 (762)
Q Consensus 199 ~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~g 274 (762)
++|++||..+..... + ...|+.||+..+.+.+..+. .|
T Consensus 167 ~IV~isS~~~~~~~~---------~-----------------------------~~~Y~asKaa~~~l~~~la~e~~~~g 208 (281)
T 4dry_A 167 RIINNGSISAQTPRP---------N-----------------------------SAPYTATKHAITGLTKSTALDGRMHD 208 (281)
T ss_dssp EEEEECCGGGTCCCT---------T-----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred EEEEECCHHhCCCCC---------C-----------------------------ChhHHHHHHHHHHHHHHHHHHhcccC
Confidence 899999986543211 0 15799999999999887765 28
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
+.+..++||.|..+.....+ . . ....... .....++..+|+|++++.++..+..
T Consensus 209 I~vn~v~PG~v~T~~~~~~~-------~--~----~~~~~~~------~~~~~~~~pedvA~~v~fL~s~~~~ 262 (281)
T 4dry_A 209 IACGQIDIGNAATDMTARMS-------T--G----VLQANGE------VAAEPTIPIEHIAEAVVYMASLPLS 262 (281)
T ss_dssp EEEEEEEEECBCC--------------C--E----EECTTSC------EEECCCBCHHHHHHHHHHHHHSCTT
T ss_pred eEEEEEEECcCcChhhhhhc-------c--h----hhhhhhc------ccccCCCCHHHHHHHHHHHhCCCcc
Confidence 99999999988655322110 0 0 0000000 0112367899999999999987654
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=9.8e-15 Score=154.56 Aligned_cols=224 Identities=12% Similarity=0.079 Sum_probs=149.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|... ++++++.+ .+.. ....++.++.+|+
T Consensus 21 l~~k~~lVTGas~gIG~aia~~L~~~--G~~V~~~~r~~~-----~~~~~~~~-----~l~~-----~~~~~~~~~~~Dv 83 (288)
T 2x9g_A 21 MEAPAAVVTGAAKRIGRAIAVKLHQT--GYRVVIHYHNSA-----EAAVSLAD-----ELNK-----ERSNTAVVCQADL 83 (288)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHH--TCEEEEEESSCH-----HHHHHHHH-----HHHH-----HSTTCEEEEECCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCeEEEEeCCch-----HHHHHHHH-----HHHh-----hcCCceEEEEeec
Confidence 58999999999999999999999999 778999999641 12222111 1110 1235789999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccC---c------c--------ccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVR---F------D--------DYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~---f------~--------~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
++++. ..++++++++ .+|+|||+||... + + +.++..+++|+.|+..+++++...
T Consensus 84 ~~~~~--~~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~ 161 (288)
T 2x9g_A 84 TNSNV--LPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQR 161 (288)
T ss_dssp SCSTT--HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred CCccC--CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 98320 0124544443 7899999999753 1 1 234568999999999999888653
Q ss_pred -C--C------ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHH
Q psy7542 195 -I--H------LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEG 265 (762)
Q Consensus 195 -~--~------lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~ 265 (762)
. + ..++|++||..+.... |. ...|+.||+..+.
T Consensus 162 ~~~~~~~~~~~~g~iv~isS~~~~~~~----------~~----------------------------~~~Y~asKaa~~~ 203 (288)
T 2x9g_A 162 QKGTNPNCTSSNLSIVNLCDAMVDQPC----------MA----------------------------FSLYNMGKHALVG 203 (288)
T ss_dssp C--------CCCEEEEEECCTTTTSCC----------TT----------------------------CHHHHHHHHHHHH
T ss_pred HhhcCCCCCCCCeEEEEEecccccCCC----------CC----------------------------CchHHHHHHHHHH
Confidence 1 1 4589999998664321 00 1579999998888
Q ss_pred HHHHHHHc----CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCccccc-ccHHHHHHHHHH
Q psy7542 266 VVTEYMEA----GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADF-LPVDVLVNGVLL 340 (762)
Q Consensus 266 lv~~~~~~----glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~-VpVDdvA~aii~ 340 (762)
+.+..+.. |+++++++||.|.++. . + .+. ......... ....+ ...+|+|++++.
T Consensus 204 l~~~la~e~~~~gI~vn~v~PG~v~t~~-~----~-----~~~-~~~~~~~~~---------p~~r~~~~pedvA~~v~~ 263 (288)
T 2x9g_A 204 LTQSAALELAPYGIRVNGVAPGVSLLPV-A----M-----GEE-EKDKWRRKV---------PLGRREASAEQIADAVIF 263 (288)
T ss_dssp HHHHHHHHHGGGTEEEEEEEESSCSCCT-T----S-----CHH-HHHHHHHTC---------TTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhhccCeEEEEEEeccccCcc-c----c-----ChH-HHHHHHhhC---------CCCCCCCCHHHHHHHHHH
Confidence 88776552 8999999999987764 1 0 111 111111111 11224 688999999999
Q ss_pred HhhcccCCCCCCceEEEecCC
Q psy7542 341 STWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 341 a~~~~~~~~~~~~~iyNi~s~ 361 (762)
++..... ...++++++.++
T Consensus 264 l~s~~~~--~itG~~i~vdGG 282 (288)
T 2x9g_A 264 LVSGSAQ--YITGSIIKVDGG 282 (288)
T ss_dssp HHSGGGT--TCCSCEEEESTT
T ss_pred HhCcccc--CccCCEEEECcc
Confidence 8875432 124788888776
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.5e-15 Score=151.74 Aligned_cols=194 Identities=17% Similarity=0.145 Sum_probs=136.3
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ ....++.++.+|++++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~D~~~~ 59 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAE--GKATYLTGRSE------SKLSTVTN--------------CLSNNVGYRARDLASH 59 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHT--TCCEEEEESCH------HHHHHHHH--------------TCSSCCCEEECCTTCH
T ss_pred CEEEEecCCchHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH--------------HHhhccCeEeecCCCH
Confidence 57999999999999999999998 67789999863 33333321 1235788999999986
Q ss_pred CCCCCHHHHHhhcCCc----cEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEEEeCCcc
Q psy7542 142 DLGISAEDRQMLSETI----HIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVYVSTAYC 208 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~v----DiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~vSSay~ 208 (762)
+ +++++++.+ |+|||+||.... .+.++..+++|+.|+.++++.+... ++-.++|++||..+
T Consensus 60 ~------~v~~~~~~~~~~~d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~ 133 (230)
T 3guy_A 60 Q------EVEQLFEQLDSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAA 133 (230)
T ss_dssp H------HHHHHHHSCSSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGG
T ss_pred H------HHHHHHHHHhhcCCEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeccc
Confidence 5 666665543 999999997532 2446678999999999999988653 11238999999866
Q ss_pred cCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEEEeeee
Q psy7542 209 HPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMILRPSI 284 (762)
Q Consensus 209 ~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~IvRPs~ 284 (762)
..... . ...|+.||+..+.+++..+.. |+.+..++||.
T Consensus 134 ~~~~~----------~----------------------------~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~ 175 (230)
T 3guy_A 134 QQPKA----------Q----------------------------ESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGG 175 (230)
T ss_dssp TSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECC
T ss_pred CCCCC----------C----------------------------CchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCc
Confidence 43211 0 157999999999999888763 89999999998
Q ss_pred eccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 285 IIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 285 V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
|..+.... .. .......++.++|+|++++.++..+..
T Consensus 176 v~t~~~~~-----------------~~---------~~~~~~~~~~~~dvA~~i~~l~~~~~~ 212 (230)
T 3guy_A 176 MATEFWET-----------------SG---------KSLDTSSFMSAEDAALMIHGALANIGN 212 (230)
T ss_dssp C------------------------------------------CCCHHHHHHHHHHHCCEETT
T ss_pred ccChHHHh-----------------cC---------CCCCcccCCCHHHHHHHHHHHHhCcCC
Confidence 75542110 00 001134678999999999998875543
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.5e-15 Score=169.32 Aligned_cols=226 Identities=16% Similarity=0.157 Sum_probs=158.0
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
+-.+++||||||||+||.+++++|++. +. +|+++.|+.......+.+.+.+ .....++.++.+
T Consensus 256 ~~~~~~vLITGgtGgIG~~lA~~La~~--G~~~vvl~~R~~~~~~~~~~l~~~l--------------~~~g~~v~~~~~ 319 (511)
T 2z5l_A 256 WQPSGTVLITGGMGAIGRRLARRLAAE--GAERLVLTSRRGPEAPGAAELAEEL--------------RGHGCEVVHAAC 319 (511)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHT--TCSEEEEEESSGGGSTTHHHHHHHH--------------HTTTCEEEEEEC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhC--CCcEEEEEecCCcccHHHHHHHHHH--------------HhcCCEEEEEEe
Confidence 457899999999999999999999988 67 7899999754322222222111 112357899999
Q ss_pred ecCCCCCCCCHHHHHhhcCC--ccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCc
Q psy7542 137 DVAVPDLGISAEDRQMLSET--IHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAY 207 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~~--vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay 207 (762)
|+++++ ++..++++ +|+|||+||..... +.++..+++|+.|+.++.+++..++++.+||++||..
T Consensus 320 Dvtd~~------~v~~~~~~~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a 393 (511)
T 2z5l_A 320 DVAERD------ALAALVTAYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVT 393 (511)
T ss_dssp CSSCHH------HHHHHHHHSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGG
T ss_pred CCCCHH------HHHHHHhcCCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHH
Confidence 999865 67777754 99999999986532 3466788999999999999987654678999999985
Q ss_pred ccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeecc
Q psy7542 208 CHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIP 287 (762)
Q Consensus 208 ~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G 287 (762)
+..... ....|+.+|+..|.+++.....|+++++++||.+..
T Consensus 394 ~~~g~~--------------------------------------g~~~YaaaKa~ld~la~~~~~~gi~v~sv~pG~~~~ 435 (511)
T 2z5l_A 394 GTWGNA--------------------------------------GQGAYAAANAALDALAERRRAAGLPATSVAWGLWGG 435 (511)
T ss_dssp GTTCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHTTTCCCEEEEECCBCS
T ss_pred hcCCCC--------------------------------------CCHHHHHHHHHHHHHHHHHHHcCCcEEEEECCcccC
Confidence 432110 015799999999999988765699999999997632
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCccc
Q psy7542 288 IWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQIT 367 (762)
Q Consensus 288 ~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT 367 (762)
+ | +..... ..... ......++.+++++++..++..... . +.+. .+.
T Consensus 436 t------g----m~~~~~-~~~~~-----------~~g~~~l~~e~~a~~l~~al~~~~~------~-v~v~-----~~d 481 (511)
T 2z5l_A 436 G------G----MAAGAG-EESLS-----------RRGLRAMDPDAAVDALLGAMGRNDV------C-VTVV-----DVD 481 (511)
T ss_dssp T------T----CCCCHH-HHHHH-----------HHTBCCBCHHHHHHHHHHHHHHTCS------E-EEEC-----CBC
T ss_pred C------c----cccccc-HHHHH-----------hcCCCCCCHHHHHHHHHHHHhCCCC------E-EEEE-----eCC
Confidence 2 1 111110 11111 1113468999999999999876543 2 2232 367
Q ss_pred HHHHHHHHHH
Q psy7542 368 WYDIIENGKD 377 (762)
Q Consensus 368 ~~el~~~i~~ 377 (762)
|..+...+..
T Consensus 482 ~~~~~~~~~~ 491 (511)
T 2z5l_A 482 WERFAPATNA 491 (511)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhhcc
Confidence 8877766543
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-14 Score=156.30 Aligned_cols=225 Identities=10% Similarity=0.021 Sum_probs=151.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEe-CCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILL-RPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~Lv-R~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++|+||||||+|+||+++++.|++. +.+|+++. |.. ++++++.+ .+.. ....++.++.+|
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~--G~~Vv~~~~r~~------~~~~~~~~-----~l~~-----~~~~~~~~~~~D 105 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAE--GYAVCLHYHRSA------AEANALSA-----TLNA-----RRPNSAITVQAD 105 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCH------HHHHHHHH-----HHHH-----HSTTCEEEEECC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEcCCCH------HHHHHHHH-----HHHh-----hcCCeEEEEEee
Confidence 57899999999999999999999998 77889998 753 22222211 1110 113578999999
Q ss_pred cCCCCC-----------CCCHHHHHhhc-------CCccEEEEcccccCc---------------------cccHHHHHH
Q psy7542 138 VAVPDL-----------GISAEDRQMLS-------ETIHIVYHIAATVRF---------------------DDYMQTYVF 178 (762)
Q Consensus 138 l~~~~L-----------GLs~~~l~~l~-------~~vDiViH~AA~v~f---------------------~~~l~~~~~ 178 (762)
+++++- .-+..++++++ ..+|+|||+||.... .+.++..++
T Consensus 106 l~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 185 (328)
T 2qhx_A 106 LSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFG 185 (328)
T ss_dssp CSSSCBCC-------CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHH
T ss_pred CCCchhccccccccccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHH
Confidence 998750 00001333333 378999999997532 334566899
Q ss_pred HhHHHHHHHHHHHHHc---CC------ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhh
Q psy7542 179 LNTRGTRDMLNLSKQM---IH------LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELL 249 (762)
Q Consensus 179 ~NV~GT~~LLelA~~~---~~------lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~ 249 (762)
+|+.|+..+++++... .+ ..+||++||..+.... |.
T Consensus 186 vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~IV~isS~~~~~~~----------~~------------------------- 230 (328)
T 2qhx_A 186 SNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL----------LG------------------------- 230 (328)
T ss_dssp HHTHHHHHHHHHHHHHHHHSCGGGSCSCEEEEEECCTTTTSCC----------TT-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcCCCCCcEEEEECchhhccCC----------CC-------------------------
Confidence 9999999999988642 13 5799999998654321 00
Q ss_pred cCCCchhHhhhHHHHHHHHHHHHc----CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcc
Q psy7542 250 QDFPNGYAYTKCLCEGVVTEYMEA----GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTC 325 (762)
Q Consensus 250 ~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~ 325 (762)
...|+.||+..+.+.+..+.. |+.+++++||.|.++. . .. + .......... ..
T Consensus 231 ---~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~-~-------~~--~-~~~~~~~~~~---------p~ 287 (328)
T 2qhx_A 231 ---YTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD-D-------MP--P-AVWEGHRSKV---------PL 287 (328)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCC-C-------SC--H-HHHHHHHTTC---------TT
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCCc-c-------cc--H-HHHHHHHhhC---------CC
Confidence 157999999999998877653 8999999999987654 1 11 1 1222222111 11
Q ss_pred c-ccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 326 A-DFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 326 ~-d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
. .+...+|+|++++.++..... ...++++++.++
T Consensus 288 ~~r~~~pedvA~~v~~l~s~~~~--~itG~~i~vdGG 322 (328)
T 2qhx_A 288 YQRDSSAAEVSDVVIFLCSSKAK--YITGTCVKVDGG 322 (328)
T ss_dssp TTSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred CCCCCCHHHHHHHHHHHhCcccc--CccCcEEEECCC
Confidence 1 367899999999998865332 124789998876
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.7e-15 Score=153.62 Aligned_cols=207 Identities=17% Similarity=0.091 Sum_probs=142.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ .++ ....++.++.+|+
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~l~------~~~~~~~~~~~Dv 65 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAE--GAAVAIAARRV------EKLRALGD-----ELT------AAGAKVHVLELDV 65 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHH------HTTCCEEEEECCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HHH------hcCCcEEEEECCC
Confidence 57899999999999999999999998 77889999863 22322211 111 1135788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++.+++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+ .++|
T Consensus 66 ~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv 138 (247)
T 2jah_A 66 ADRQ------GVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVV 138 (247)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEE
Confidence 9865 5555443 79999999997532 1346678999999999999988642 23 6999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+.... |. ...|+.||+..+.+.+..+. .|+++
T Consensus 139 ~isS~~~~~~~----------~~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v 180 (247)
T 2jah_A 139 QMSSIAGRVNV----------RN----------------------------AAVYQATKFGVNAFSETLRQEVTERGVRV 180 (247)
T ss_dssp EECCGGGTCCC----------TT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred EEccHHhcCCC----------CC----------------------------CcHHHHHHHHHHHHHHHHHHHhcccCcEE
Confidence 99998654321 10 15799999988888877654 38999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
++++||.|.++... ... ... ....... .+ ....++..+|+|++++.++....
T Consensus 181 ~~v~PG~v~T~~~~-------~~~-~~~-~~~~~~~----~~----~~~~~~~pedvA~~v~~l~s~~~ 232 (247)
T 2jah_A 181 VVIEPGTTDTELRG-------HIT-HTA-TKEMYEQ----RI----SQIRKLQAQDIAEAVRYAVTAPH 232 (247)
T ss_dssp EEEEECSBSSSGGG-------GCC-CHH-HHHHHHH----HT----TTSCCBCHHHHHHHHHHHHHSCT
T ss_pred EEEECCCCCCcchh-------ccc-chh-hHHHHHh----cc----cccCCCCHHHHHHHHHHHhCCCc
Confidence 99999988665321 111 111 1111110 00 11125889999999999987654
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.5e-15 Score=152.57 Aligned_cols=203 Identities=16% Similarity=0.141 Sum_probs=139.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|... +++++.+ .+... .....++.++.+|+
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~------~~~~~~~-----~~~~~---~~~~~~~~~~~~Dv 68 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATD--GYRVVLIARSKQ------NLEKVHD-----EIMRS---NKHVQEPIVLPLDI 68 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHH--TCEEEEEESCHH------HHHHHHH-----HHHHH---CTTSCCCEEEECCT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEECCHH------HHHHHHH-----HHHHh---ccccCcceEEeccC
Confidence 47899999999999999999999999 678999998642 2222211 11111 01125788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc---c---ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF---D---DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f---~---~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~ 202 (762)
++++ +++++++ .+|++||+||.... + +.++..+++|+.|+..+++++... .+..++|+
T Consensus 69 ~~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~ 142 (250)
T 3nyw_A 69 TDCT------KADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFN 142 (250)
T ss_dssp TCHH------HHHHHHHHHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 9865 5555443 68999999997532 2 446678999999999999988431 24579999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~ 278 (762)
+||..+..... + ...|+.||+..+.+.+..+.. |+++.
T Consensus 143 isS~~~~~~~~---------~-----------------------------~~~Y~asKaa~~~l~~~la~e~~~~gi~vn 184 (250)
T 3nyw_A 143 VASRAAKYGFA---------D-----------------------------GGIYGSTKFALLGLAESLYRELAPLGIRVT 184 (250)
T ss_dssp ECC-------C---------C-----------------------------TTHHHHHHHHHHHHHHHHHHHHGGGTEEEE
T ss_pred EccHHhcCCCC---------C-----------------------------CcchHHHHHHHHHHHHHHHHHhhhcCcEEE
Confidence 99986532110 1 157999999999888877653 89999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
.++||.|..+. ...... ......++..+|+|++++.++..+..
T Consensus 185 ~v~PG~v~T~~-----------------~~~~~~---------~~~~~~~~~p~dva~~v~~l~s~~~~ 227 (250)
T 3nyw_A 185 TLCPGWVNTDM-----------------AKKAGT---------PFKDEEMIQPDDLLNTIRCLLNLSEN 227 (250)
T ss_dssp EEEESSBCSHH-----------------HHHTTC---------CSCGGGSBCHHHHHHHHHHHHTSCTT
T ss_pred EEecCcccCch-----------------hhhcCC---------CcccccCCCHHHHHHHHHHHHcCCCc
Confidence 99999774431 111111 11224578999999999999886543
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=8.6e-15 Score=154.76 Aligned_cols=227 Identities=14% Similarity=0.091 Sum_probs=150.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||+|+||++++++|++. +.+|+++.|.. ++++++.. ....++.++.+|+
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~Dv 60 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAE--GARVAVLDKSA------ERLRELEV--------------AHGGNAVGVVGDV 60 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH--------------HTBTTEEEEECCT
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeCCH------HHHHHHHH--------------HcCCcEEEEEcCC
Confidence 47899999999999999999999999 77889998853 33333211 1235789999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCcc------------ccHHHHHHHhHHHHHHHHHHHHHc--CCc
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRFD------------DYMQTYVFLNTRGTRDMLNLSKQM--IHL 197 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~------------~~l~~~~~~NV~GT~~LLelA~~~--~~l 197 (762)
++++ +++.++ ..+|++||+||..... +.++..+++|+.|+..+++++... ++-
T Consensus 61 ~~~~------~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~ 134 (281)
T 3zv4_A 61 RSLQ------DQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSR 134 (281)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC
Confidence 9865 454444 3689999999975321 236678999999999999988642 112
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---C
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---G 274 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---g 274 (762)
.++|++||..+..... . ...|+.||+..+.+.+..+.. +
T Consensus 135 g~iv~isS~~~~~~~~----------~----------------------------~~~Y~asKaa~~~l~~~la~e~~~~ 176 (281)
T 3zv4_A 135 GSVVFTISNAGFYPNG----------G----------------------------GPLYTATKHAVVGLVRQMAFELAPH 176 (281)
T ss_dssp CEEEEECCGGGTSSSS----------S----------------------------CHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CeEEEEecchhccCCC----------C----------------------------CchhHHHHHHHHHHHHHHHHHhcCC
Confidence 5899999986543211 0 147999999999999888764 5
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCC-CCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTD-NINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWid-n~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
+.+..+.||.|..+...+...... .............. ......+...+|+|++++.++..+... ...+
T Consensus 177 Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~p~~r~~~pedvA~~v~fL~s~~~~~-~itG 246 (281)
T 3zv4_A 177 VRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKS---------VLPIGRMPALEEYTGAYVFFATRGDSL-PATG 246 (281)
T ss_dssp SEEEEEEECSSCC--CCCTTCC--------CCHHHHHHH---------TCTTSSCCCGGGGSHHHHHHHSTTTST-TCSS
T ss_pred CEEEEEECCcCcCCcccccccccccccccchhHHHHHHh---------cCCCCCCCCHHHHHHHHHHhhcccccc-cccC
Confidence 999999999887654322100000 00000001111111 112234677899999999988733221 1257
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++++.+|
T Consensus 247 ~~i~vdGG 254 (281)
T 3zv4_A 247 ALLNYDGG 254 (281)
T ss_dssp CEEEESSS
T ss_pred cEEEECCC
Confidence 89999887
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-14 Score=152.26 Aligned_cols=219 Identities=14% Similarity=0.107 Sum_probs=149.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcc-hHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKN-SRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~-~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|...... ..+++++..+ .+ .....++.++.+|
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~D 73 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAAD--GANVALVAKSAEPHPKLPGTIYTAAK-----EI------EEAGGQALPIVGD 73 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTT--TCEEEEEESCCSCCSSSCCCHHHHHH-----HH------HHHTSEEEEEECC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECChhhhhhhhHHHHHHHH-----HH------HhcCCcEEEEECC
Confidence 57899999999999999999999998 778999999865321 1011111110 01 1123578999999
Q ss_pred cCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 138 VAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
+++++ +++++++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+..++
T Consensus 74 v~~~~------~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~i 147 (285)
T 3sc4_A 74 IRDGD------AVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHI 147 (285)
T ss_dssp TTSHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEE
Confidence 99865 5555544 79999999997642 2446678999999999999988653 134699
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... .....|+.||+..+.+.+..+.. |+.
T Consensus 148 v~isS~~~~~~~~-------------------------------------~~~~~Y~asKaal~~~~~~la~e~~~~gI~ 190 (285)
T 3sc4_A 148 LTLSPPIRLEPKW-------------------------------------LRPTPYMMAKYGMTLCALGIAEELRDAGIA 190 (285)
T ss_dssp EECCCCCCCSGGG-------------------------------------SCSHHHHHHHHHHHHHHHHHHHHTGGGTCE
T ss_pred EEECChhhccCCC-------------------------------------CCCchHHHHHHHHHHHHHHHHHHhcccCcE
Confidence 9999976532210 01157999999999998887662 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
++.++||.+..+ .+........ .....+...+|+|++++.++..... ..++++
T Consensus 191 vn~v~PG~~v~t----------------~~~~~~~~~~--------~~~~r~~~pedvA~~~~~l~s~~~~---~tG~~i 243 (285)
T 3sc4_A 191 SNTLWPRTTVAT----------------AAVQNLLGGD--------EAMARSRKPEVYADAAYVVLNKPSS---YTGNTL 243 (285)
T ss_dssp EEEEECSSCBCC----------------HHHHHHHTSC--------CCCTTCBCTHHHHHHHHHHHTSCTT---CCSCEE
T ss_pred EEEEeCCCcccc----------------HHHHhhcccc--------ccccCCCCHHHHHHHHHHHhCCccc---ccceEE
Confidence 999999832211 1222222111 1123467889999999999876542 135666
Q ss_pred EecC
Q psy7542 357 NLTA 360 (762)
Q Consensus 357 Ni~s 360 (762)
.+.+
T Consensus 244 ~~dg 247 (285)
T 3sc4_A 244 LCED 247 (285)
T ss_dssp EHHH
T ss_pred EEcC
Confidence 5544
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-14 Score=151.78 Aligned_cols=224 Identities=13% Similarity=0.018 Sum_probs=154.7
Q ss_pred cCCCEEEEECCC--ChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGAS--GFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGAT--GFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
++||+|+||||+ |+||.+++++|++. +.+|+++.|..... .++.++++. .....++.++.+
T Consensus 18 l~~k~vlITGas~~~giG~~~a~~l~~~--G~~v~~~~~~~~~~-~~~~~~~l~--------------~~~~~~~~~~~~ 80 (267)
T 3gdg_A 18 LKGKVVVVTGASGPKGMGIEAARGCAEM--GAAVAITYASRAQG-AEENVKELE--------------KTYGIKAKAYKC 80 (267)
T ss_dssp CTTCEEEETTCCSSSSHHHHHHHHHHHT--SCEEEECBSSSSSH-HHHHHHHHH--------------HHHCCCEECCBC
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHC--CCeEEEEeCCcchh-HHHHHHHHH--------------HhcCCceeEEec
Confidence 689999999999 99999999999998 77888888875432 123333321 112367899999
Q ss_pred ecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccE
Q psy7542 137 DVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQL 199 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~ 199 (762)
|+++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+..+
T Consensus 81 Dl~~~~------~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~ 154 (267)
T 3gdg_A 81 QVDSYE------SCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGS 154 (267)
T ss_dssp CTTCHH------HHHHHHHHHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCE
T ss_pred CCCCHH------HHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCce
Confidence 999865 5554443 67999999997642 2456778999999999999988321 14468
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---CCC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---GMP 276 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---glp 276 (762)
+|++||..+..... +.+ ...|+.||+..+.+++..+.. .+.
T Consensus 155 iv~isS~~~~~~~~-------~~~-----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~i~ 198 (267)
T 3gdg_A 155 LVITASMSGHIANF-------PQE-----------------------------QTSYNVAKAGCIHMARSLANEWRDFAR 198 (267)
T ss_dssp EEEECCGGGTSCCS-------SSC-----------------------------CHHHHHHHHHHHHHHHHHHHHTTTTCE
T ss_pred EEEEccccccccCC-------CCC-----------------------------CCcchHHHHHHHHHHHHHHHHhccCcE
Confidence 99999986543210 000 157999999999999888774 478
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+..+.||.|-.+.... .+......... ......+..++|+|++++.++..... ...++++
T Consensus 199 v~~v~PG~v~t~~~~~---------~~~~~~~~~~~---------~~~~~r~~~~~dva~~~~~l~s~~~~--~itG~~i 258 (267)
T 3gdg_A 199 VNSISPGYIDTGLSDF---------VPKETQQLWHS---------MIPMGRDGLAKELKGAYVYFASDAST--YTTGADL 258 (267)
T ss_dssp EEEEEECCEECSCGGG---------SCHHHHHHHHT---------TSTTSSCEETHHHHHHHHHHHSTTCT--TCCSCEE
T ss_pred EEEEECCccccchhhh---------CCHHHHHHHHh---------cCCCCCCcCHHHHHhHhheeecCccc--cccCCEE
Confidence 9999999886543211 11122222211 12234567789999999988865432 1257899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.+|
T Consensus 259 ~vdgG 263 (267)
T 3gdg_A 259 LIDGG 263 (267)
T ss_dssp EESTT
T ss_pred EECCc
Confidence 99877
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=153.33 Aligned_cols=217 Identities=17% Similarity=0.130 Sum_probs=142.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++ |+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ +. ... .++.++.+|+
T Consensus 20 ~~-k~vlVTGas~gIG~aia~~La~~--G~~V~~~~r~~------~~~~~~~~---------~~--~~~-~~~~~~~~Dv 78 (272)
T 2nwq_A 20 MS-STLFITGATSGFGEACARRFAEA--GWSLVLTGRRE------ERLQALAG---------EL--SAK-TRVLPLTLDV 78 (272)
T ss_dssp -C-CEEEESSTTTSSHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH---------HH--TTT-SCEEEEECCT
T ss_pred cC-cEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH---------Hh--hcC-CcEEEEEcCC
Confidence 45 89999999999999999999998 77899999863 22322211 00 111 4788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc---CCcc-E
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQ-L 199 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk-~ 199 (762)
++++ +++.+++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+.. +
T Consensus 79 ~d~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~ 152 (272)
T 2nwq_A 79 RDRA------AMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGAS 152 (272)
T ss_dssp TCHH------HHHHHHHTCCGGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 9865 5666554 36999999997532 2456778999999988887777531 1445 9
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----gl 275 (762)
+|++||..+.... |. ...|+.||+..|.+.+..+.. |+
T Consensus 153 IV~isS~~~~~~~----------~~----------------------------~~~Y~asKaa~~~l~~~la~el~~~gI 194 (272)
T 2nwq_A 153 IVNLGSVAGKWPY----------PG----------------------------SHVYGGTKAFVEQFSLNLRCDLQGTGV 194 (272)
T ss_dssp EEEECCGGGTSCC----------TT----------------------------CHHHHHHHHHHHHHHHHHHTTCTTSCC
T ss_pred EEEeCCchhccCC----------CC----------------------------CchHHHHHHHHHHHHHHHHHHhCccCe
Confidence 9999998654321 10 157999999999999887752 89
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
++++++||.|.++..... ..+..... ..... ....+..+|+|++++.++...... .++.
T Consensus 195 rvn~v~PG~v~T~~~~~~------~~~~~~~~--------~~~~~----~~~~~~pedvA~~v~~l~s~~~~~---~g~~ 253 (272)
T 2nwq_A 195 RVTNLEPGLCESEFSLVR------FGGDQARY--------DKTYA----GAHPIQPEDIAETIFWIMNQPAHL---NINS 253 (272)
T ss_dssp EEEEEEECSBC--------------------------------------CCCCBCHHHHHHHHHHHHTSCTTE---EEEE
T ss_pred EEEEEEcCCCcCcchhcc------cccchHHH--------HHhhc----cCCCCCHHHHHHHHHHHhCCCccC---ccce
Confidence 999999998866532100 00000000 00000 012478999999999998754321 3455
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+.+..+
T Consensus 254 i~v~~~ 259 (272)
T 2nwq_A 254 LEIMPV 259 (272)
T ss_dssp EEEEET
T ss_pred EEEeec
Confidence 665544
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-14 Score=153.04 Aligned_cols=228 Identities=13% Similarity=0.105 Sum_probs=142.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.++|+||||||+|+||.+++++|++. +.+|+++.|... ++++..+ .++ .....++.++.+|+
T Consensus 10 ~~~k~vlITGas~GIG~~~a~~L~~~--G~~V~~~~r~~~------~~~~~~~-----~l~-----~~~~~~~~~~~~Dl 71 (311)
T 3o26_A 10 TKRRCAVVTGGNKGIGFEICKQLSSN--GIMVVLTCRDVT------KGHEAVE-----KLK-----NSNHENVVFHQLDV 71 (311)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESCHH------HHHHHHH-----HHH-----TTTCCSEEEEECCT
T ss_pred CCCcEEEEecCCchHHHHHHHHHHHC--CCEEEEEeCCHH------HHHHHHH-----HHH-----hcCCCceEEEEccC
Confidence 47899999999999999999999998 778999999642 2222111 111 11235799999999
Q ss_pred CCC-CCCCCHHHHHhhc-------CCccEEEEcccccCc-------------------------------------cccH
Q psy7542 139 AVP-DLGISAEDRQMLS-------ETIHIVYHIAATVRF-------------------------------------DDYM 173 (762)
Q Consensus 139 ~~~-~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------------------------------------~~~l 173 (762)
+++ + +++.++ ..+|+|||+||.... .+.+
T Consensus 72 ~~~~~------~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (311)
T 3o26_A 72 TDPIA------TMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELA 145 (311)
T ss_dssp TSCHH------HHHHHHHHHHHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHH
T ss_pred CCcHH------HHHHHHHHHHHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhh
Confidence 997 4 333333 479999999997632 1234
Q ss_pred HHHHHHhHHHHHHHHHHHHHc---CCccEEEEEeCCcccCCCc---ccccccC-CCCCChhhHHHHHHhhhHHHHHHHHH
Q psy7542 174 QTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVSTAYCHPKEK---VLEEKTY-PPPVSPHNVIEKAELLSKNELELLKQ 246 (762)
Q Consensus 174 ~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vSSay~~~~~~---~i~E~~~-~~p~~p~~~~~~~e~l~~e~l~~~tp 246 (762)
+..+++|+.|+..+++++... .+..++|++||..+..... ...+... .......+.-... ....+....
T Consensus 146 ~~~~~~N~~g~~~l~~~~~~~l~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 221 (311)
T 3o26_A 146 EECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVV----NMLLKDFKE 221 (311)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHH----HHHHHHHHT
T ss_pred hhheeeeeehHHHHHHHhhHhhccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHH----HHHHhhhhc
Confidence 567999999999999888642 2446999999985533211 0000000 0001111110000 011111111
Q ss_pred h--hhcCCC---chhHhhhHHHHHHHHHHHHc--CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEe
Q psy7542 247 E--LLQDFP---NGYAYTKCLCEGVVTEYMEA--GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMY 319 (762)
Q Consensus 247 ~--l~~~~p---n~Y~~SK~~aE~lv~~~~~~--glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~ 319 (762)
. -..++| ..|+.||+..+.+++..+.. ++.++.+.||.|..+...+
T Consensus 222 ~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~e~~~i~v~~v~PG~v~T~~~~~--------------------------- 274 (311)
T 3o26_A 222 NLIETNGWPSFGAAYTTSKACLNAYTRVLANKIPKFQVNCVCPGLVKTEMNYG--------------------------- 274 (311)
T ss_dssp TCTTTTTCCSSCHHHHHHHHHHHHHHHHHHHHCTTSEEEEECCCSBCSGGGTT---------------------------
T ss_pred cccccccCcccchhhHHHHHHHHHHHHHHHhhcCCceEEEecCCceecCCcCC---------------------------
Confidence 1 112233 57999999999999998875 7889999998775442110
Q ss_pred eCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 320 CDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 320 gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
......+++++.++.++..+..
T Consensus 275 ------~~~~~~~~~a~~~~~~~~~~~~ 296 (311)
T 3o26_A 275 ------IGNYTAEEGAEHVVRIALFPDD 296 (311)
T ss_dssp ------CCSBCHHHHHHHHHHHHTCCSS
T ss_pred ------CCCCCHHHHHHHHHHHHhCCCC
Confidence 0124678899998888775543
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=6.8e-15 Score=153.67 Aligned_cols=167 Identities=15% Similarity=0.127 Sum_probs=122.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|+||||+|+||++++++|++. +.+|+++.|.. ++++++.+ .+ .....++.++.+|+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~~------~~~~~~~~~~~~D~ 65 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEE--GTAIALLDMNR------EALEKAEA-----SV------REKGVEARSYVCDV 65 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HH------HTTTSCEEEEECCT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HH------HhcCCcEEEEEecC
Confidence 57899999999999999999999998 77889999863 22222111 11 11135788999999
Q ss_pred CCCCCCCCHHHHHhhcC-------CccEEEEccccc-C---c----cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLSE-------TIHIVYHIAATV-R---F----DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v-~---f----~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
++++ +++.+++ .+|+|||+||.. . + .+.++..+++|+.|+.++++++... .+..++
T Consensus 66 ~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~i 139 (262)
T 1zem_A 66 TSEE------AVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRI 139 (262)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEE
Confidence 9865 4554443 789999999975 2 1 2346778999999999999988653 245799
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+.... |. ...|+.||+..+.+.+..+. .|++
T Consensus 140 v~isS~~~~~~~----------~~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~ 181 (262)
T 1zem_A 140 VNTASMAGVKGP----------PN----------------------------MAAYGTSKGAIIALTETAALDLAPYNIR 181 (262)
T ss_dssp EEECCHHHHSCC----------TT----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEcchhhccCC----------CC----------------------------CchHHHHHHHHHHHHHHHHHHHHhhCeE
Confidence 999998553221 00 14799999988888777654 3899
Q ss_pred EEEEeeeeeccC
Q psy7542 277 CMILRPSIIIPI 288 (762)
Q Consensus 277 v~IvRPs~V~G~ 288 (762)
+++++||.|..+
T Consensus 182 vn~v~PG~v~t~ 193 (262)
T 1zem_A 182 VNAISPGYMGPG 193 (262)
T ss_dssp EEEEEECSBCSS
T ss_pred EEEEecCCcCcc
Confidence 999999987544
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-14 Score=149.21 Aligned_cols=215 Identities=14% Similarity=0.096 Sum_probs=144.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcc-hHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKN-SRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~-~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
++||+|+||||+|+||++++++|++. +.+|+++.|...... ..+.+++..+ .+ .....++.++.+|
T Consensus 4 l~~k~~lVTGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~D 70 (274)
T 3e03_A 4 LSGKTLFITGASRGIGLAIALRAARD--GANVAIAAKSAVANPKLPGTIHSAAA-----AV------NAAGGQGLALKCD 70 (274)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCCSCCTTSCCCHHHHHH-----HH------HHHTSEEEEEECC
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHC--CCEEEEEeccchhhhhhHHHHHHHHH-----HH------HhcCCeEEEEeCC
Confidence 47899999999999999999999998 678999999764311 1111111110 01 1123678999999
Q ss_pred cCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 138 VAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
+++++ +++++++ .+|++||+||.... .+.++..+++|+.|+..+++++... .+..++
T Consensus 71 v~~~~------~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~i 144 (274)
T 3e03_A 71 IREED------QVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHI 144 (274)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceE
Confidence 99875 5555443 78999999997532 2456778999999999999988642 234689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... .+ ....|+.||+..+.+.+..+.. |+.
T Consensus 145 v~isS~~~~~~~~-------------------------------~~-----~~~~Y~asKaal~~l~~~la~e~~~~gI~ 188 (274)
T 3e03_A 145 LTLAPPPSLNPAW-------------------------------WG-----AHTGYTLAKMGMSLVTLGLAAEFGPQGVA 188 (274)
T ss_dssp EECCCCCCCCHHH-------------------------------HH-----HCHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred EEECChHhcCCCC-------------------------------CC-----CCchHHHHHHHHHHHHHHHHHHhhhcCEE
Confidence 9999986532100 00 0147999999999888877652 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+..+.||.++.+. . . .. . .......+...+|+|++++.++...... ..++++
T Consensus 189 vn~v~PG~~v~T~---~-------------~-~~-------~--~~~~~~~~~~pedvA~~v~~l~s~~~~~--itG~~i 240 (274)
T 3e03_A 189 INALWPRTVIATD---A-------------I-NM-------L--PGVDAAACRRPEIMADAAHAVLTREAAG--FHGQFL 240 (274)
T ss_dssp EEEEECSBCBCC---------------------------------CCCGGGSBCTHHHHHHHHHHHTSCCTT--CCSCEE
T ss_pred EEEEECCcccccc---h-------------h-hh-------c--ccccccccCCHHHHHHHHHHHhCccccc--cCCeEE
Confidence 9999998433221 0 0 00 0 0111223678999999999998765431 135566
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-14 Score=147.16 Aligned_cols=211 Identities=14% Similarity=0.101 Sum_probs=142.3
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.++||+|+||||+|+||++++++|++. +.+|+++.|.. ++++++.+ .++ .....++.++.+|
T Consensus 11 ~l~~k~vlITGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~~~-----~~~~~~~~~~~~d 72 (247)
T 3i1j_A 11 LLKGRVILVTGAARGIGAAAARAYAAH--GASVVLLGRTE------ASLAEVSD-----QIK-----SAGQPQPLIIALN 72 (247)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHH-----HTTSCCCEEEECC
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEecCH------HHHHHHHH-----HHH-----hcCCCCceEEEec
Confidence 368999999999999999999999998 67899999863 22222211 111 1112567788888
Q ss_pred c--CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc---CCc
Q psy7542 138 V--AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM---IHL 197 (762)
Q Consensus 138 l--~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~---~~l 197 (762)
+ ++++ ++..++ ..+|++||+||.... .+.++..+++|+.|+..+++++... .+.
T Consensus 73 ~d~~~~~------~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~ 146 (247)
T 3i1j_A 73 LENATAQ------QYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSED 146 (247)
T ss_dssp TTTCCHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSS
T ss_pred cccCCHH------HHHHHHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC
Confidence 8 5433 444443 378999999997532 1456778999999999999998531 245
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---- 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---- 273 (762)
.++|++||..+..... . ...|+.||+..+.+++..+..
T Consensus 147 ~~iv~isS~~~~~~~~----------~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~ 188 (247)
T 3i1j_A 147 ASIAFTSSSVGRKGRA----------N----------------------------WGAYGVSKFATEGLMQTLADELEGV 188 (247)
T ss_dssp EEEEEECCGGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CeEEEEcchhhcCCCC----------C----------------------------cchhHHHHHHHHHHHHHHHHHhcCC
Confidence 7999999986543211 0 157999999999998876652
Q ss_pred -CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCC
Q psy7542 274 -GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNT 352 (762)
Q Consensus 274 -glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~ 352 (762)
++.+..+.||.|-.+ +...... ......+...+|+|++++.++...... ..
T Consensus 189 ~~i~v~~v~PG~v~t~-----------------~~~~~~~---------~~~~~~~~~p~dva~~~~~l~s~~~~~--it 240 (247)
T 3i1j_A 189 TAVRANSINPGATRTG-----------------MRAQAYP---------DENPLNNPAPEDIMPVYLYLMGPDSTG--IN 240 (247)
T ss_dssp SSEEEEEEECCCCSSH-----------------HHHHHST---------TSCGGGSCCGGGGTHHHHHHHSGGGTT--CC
T ss_pred CCeEEEEEecCcccCc-----------------cchhccc---------ccCccCCCCHHHHHHHHHHHhCchhcc--cc
Confidence 688889999866332 1111111 112234567899999999988654331 13
Q ss_pred ceEEEe
Q psy7542 353 MRVINL 358 (762)
Q Consensus 353 ~~iyNi 358 (762)
++++++
T Consensus 241 G~~i~~ 246 (247)
T 3i1j_A 241 GQALNA 246 (247)
T ss_dssp SCEEEC
T ss_pred CeeecC
Confidence 566554
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.7e-14 Score=153.26 Aligned_cols=207 Identities=18% Similarity=0.146 Sum_probs=143.5
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcch-HHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNS-RERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~-~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
.++||+||||||+|+||++++++|++. +.+|+++.|....... .+.+++.. +.+ .....++.++.+
T Consensus 42 ~l~gk~vlVTGas~GIG~aia~~La~~--Ga~Vvl~~r~~~~~~~l~~~l~~~~-----~~~------~~~g~~~~~~~~ 108 (346)
T 3kvo_A 42 RLAGCTVFITGASRGIGKAIALKAAKD--GANIVIAAKTAQPHPKLLGTIYTAA-----EEI------EAVGGKALPCIV 108 (346)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTT--TCEEEEEESCCSCCSSSCCCHHHHH-----HHH------HHTTCEEEEEEC
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHHHC--CCEEEEEECChhhhhhhHHHHHHHH-----HHH------HhcCCeEEEEEc
Confidence 368999999999999999999999998 7789999997653211 00111110 001 122357899999
Q ss_pred ecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccE
Q psy7542 137 DVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQL 199 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~ 199 (762)
|+++++ +++++++ .+|+|||+||.... .+.++..+++|+.|+.++++++... .+..+
T Consensus 109 Dv~d~~------~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~ 182 (346)
T 3kvo_A 109 DVRDEQ------QISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAH 182 (346)
T ss_dssp CTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCE
T ss_pred cCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCE
Confidence 999875 5555544 79999999997542 2456778999999999999998542 24579
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---CCC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---GMP 276 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---glp 276 (762)
+|++||..+..... . + ....|+.||+..+.+++..+.. |+.
T Consensus 183 IV~iSS~~~~~~~~-~-------~----------------------------~~~~Y~aSKaal~~l~~~la~e~~~gIr 226 (346)
T 3kvo_A 183 ILNISPPLNLNPVW-F-------K----------------------------QHCAYTIAKYGMSMYVLGMAEEFKGEIA 226 (346)
T ss_dssp EEEECCCCCCCGGG-T-------S----------------------------SSHHHHHHHHHHHHHHHHHHHHTTTTCE
T ss_pred EEEECCHHHcCCCC-C-------C----------------------------CchHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence 99999986542210 0 0 0157999999999998887763 799
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhc
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWN 344 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~ 344 (762)
+..+.||.++.+ .+.... .+. .....+...+|+|++++.++..
T Consensus 227 vn~v~PG~~i~T----------------~~~~~~-~~~--------~~~~r~~~pedvA~~v~~L~s~ 269 (346)
T 3kvo_A 227 VNALWPKTAIHT----------------AAMDML-GGP--------GIESQCRKVDIIADAAYSIFQK 269 (346)
T ss_dssp EEEEECSBCBCC----------------HHHHHH-CC----------CGGGCBCTHHHHHHHHHHHTS
T ss_pred EEEEeCCCcccc----------------HHHHhh-ccc--------cccccCCCHHHHHHHHHHHHhc
Confidence 999999853322 111111 111 1133467889999999999887
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-13 Score=146.94 Aligned_cols=225 Identities=10% Similarity=0.018 Sum_probs=150.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEe-CCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILL-RPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~Lv-R~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++|+||||||+|+||++++++|++. +.+|+++. |.. ++++++.+ .+.. ....++.++.+|
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~--G~~V~~~~~r~~------~~~~~~~~-----~l~~-----~~~~~~~~~~~D 68 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAE--GYAVCLHYHRSA------AEANALSA-----TLNA-----RRPNSAITVQAD 68 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCH------HHHHHHHH-----HHHH-----HSTTCEEEEECC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCeEEEEcCCCH------HHHHHHHH-----HHhh-----hcCCeeEEEEee
Confidence 47899999999999999999999998 77889998 753 22222211 1110 113578999999
Q ss_pred cCCCCC-----------CCCHHHHHhhc-------CCccEEEEcccccCc---------------------cccHHHHHH
Q psy7542 138 VAVPDL-----------GISAEDRQMLS-------ETIHIVYHIAATVRF---------------------DDYMQTYVF 178 (762)
Q Consensus 138 l~~~~L-----------GLs~~~l~~l~-------~~vDiViH~AA~v~f---------------------~~~l~~~~~ 178 (762)
+++++- +-..+++.+++ ..+|++||+||.... .+.++..++
T Consensus 69 l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (291)
T 1e7w_A 69 LSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFG 148 (291)
T ss_dssp CSSSCBCCCC----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHH
T ss_pred cCCcccccccccccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHH
Confidence 998750 00001333333 378999999997532 234567899
Q ss_pred HhHHHHHHHHHHHHHc---CC------ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhh
Q psy7542 179 LNTRGTRDMLNLSKQM---IH------LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELL 249 (762)
Q Consensus 179 ~NV~GT~~LLelA~~~---~~------lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~ 249 (762)
+|+.|+..+++++... .+ ..++|++||..+.... |.
T Consensus 149 ~N~~g~~~l~~~~~~~m~~~~~~~~~~~g~Iv~isS~~~~~~~----------~~------------------------- 193 (291)
T 1e7w_A 149 SNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL----------LG------------------------- 193 (291)
T ss_dssp HHTHHHHHHHHHHHHHHHTSCGGGSCSCEEEEEECCTTTTSCC----------TT-------------------------
T ss_pred HHhHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEechhhcCCC----------CC-------------------------
Confidence 9999999999988642 12 4789999998654321 10
Q ss_pred cCCCchhHhhhHHHHHHHHHHHHc----CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcc
Q psy7542 250 QDFPNGYAYTKCLCEGVVTEYMEA----GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTC 325 (762)
Q Consensus 250 ~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~ 325 (762)
...|+.||+..+.+.+..+.. |+.++.++||.|..+. . . . ........... ..
T Consensus 194 ---~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~-~-~--------~-~~~~~~~~~~~---------p~ 250 (291)
T 1e7w_A 194 ---YTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD-D-M--------P-PAVWEGHRSKV---------PL 250 (291)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGG-G-S--------C-HHHHHHHHTTC---------TT
T ss_pred ---CchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCccCCc-c-C--------C-HHHHHHHHhhC---------CC
Confidence 157999999999988877652 8999999999875442 1 0 1 11212211110 11
Q ss_pred c-ccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 326 A-DFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 326 ~-d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
. -+...+|+|++++.++..... ...++++++.++
T Consensus 251 ~~r~~~pedvA~~v~~l~s~~~~--~itG~~i~vdGG 285 (291)
T 1e7w_A 251 YQRDSSAAEVSDVVIFLCSSKAK--YITGTCVKVDGG 285 (291)
T ss_dssp TTSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred CCCCCCHHHHHHHHHHHhCCccc--CccCcEEEECCC
Confidence 1 367899999999998865432 124788888876
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-13 Score=140.97 Aligned_cols=218 Identities=10% Similarity=0.029 Sum_probs=152.4
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
+.|+||+++||||++.||+.+++.|++. +.+|++..|...... .....++..+.+
T Consensus 7 dlf~GK~alVTGas~GIG~aia~~la~~--Ga~Vv~~~~~~~~~~-----------------------~~~~~~~~~~~~ 61 (242)
T 4b79_A 7 DIYAGQQVLVTGGSSGIGAAIAMQFAEL--GAEVVALGLDADGVH-----------------------APRHPRIRREEL 61 (242)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSTTSTT-----------------------SCCCTTEEEEEC
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHh-----------------------hhhcCCeEEEEe
Confidence 4579999999999999999999999999 788999999754321 122467889999
Q ss_pred ecCCCCCCCCHHHHHhhc---CCccEEEEcccccCc-----cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEEEeCC
Q psy7542 137 DVAVPDLGISAEDRQMLS---ETIHIVYHIAATVRF-----DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVYVSTA 206 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~---~~vDiViH~AA~v~f-----~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~vSSa 206 (762)
|+++++ ++++++ ..+|++||+||.... .+.++..+++|+.|+..+.+++..+ ++-.++|.+||.
T Consensus 62 Dv~~~~------~v~~~~~~~g~iDiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~ 135 (242)
T 4b79_A 62 DITDSQ------RLQRLFEALPRLDVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASM 135 (242)
T ss_dssp CTTCHH------HHHHHHHHCSCCSEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCG
T ss_pred cCCCHH------HHHHHHHhcCCCCEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeec
Confidence 999876 455544 468999999997542 2457789999999999988887643 122689999998
Q ss_pred cccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEee
Q psy7542 207 YCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILRP 282 (762)
Q Consensus 207 y~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvRP 282 (762)
.+..... . ...|+.||+....+.+..+. .|+++..|-|
T Consensus 136 ~~~~~~~----------~----------------------------~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~P 177 (242)
T 4b79_A 136 YSTFGSA----------D----------------------------RPAYSASKGAIVQLTRSLACEYAAERIRVNAIAP 177 (242)
T ss_dssp GGTSCCS----------S----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred cccCCCC----------C----------------------------CHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEe
Confidence 7643211 0 14799999988887776655 3899999999
Q ss_pred eeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 283 SIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 283 s~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
|.|-.+.... ..........+.... ..--+...+|+|++++.++.....- -.++++.+.+|
T Consensus 178 G~i~T~m~~~-------~~~~~~~~~~~~~~~---------PlgR~g~peeiA~~v~fLaSd~a~~--iTG~~l~VDGG 238 (242)
T 4b79_A 178 GWIDTPLGAG-------LKADVEATRRIMQRT---------PLARWGEAPEVASAAAFLCGPGASF--VTGAVLAVDGG 238 (242)
T ss_dssp CSBCCC------------CCCHHHHHHHHHTC---------TTCSCBCHHHHHHHHHHHTSGGGTT--CCSCEEEESTT
T ss_pred CCCCChhhhc-------ccCCHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCchhcC--ccCceEEECcc
Confidence 9886553221 111112222222211 1122556789999999988655431 25788888766
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6e-14 Score=158.50 Aligned_cols=219 Identities=13% Similarity=0.054 Sum_probs=147.3
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
..++++++|||||+|.||.++++.|++. +.+|+++.|... .+.+++..+ ..++.++.+
T Consensus 209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~--Ga~Vvl~~r~~~----~~~l~~~~~----------------~~~~~~~~~ 266 (454)
T 3u0b_A 209 KPLDGKVAVVTGAARGIGATIAEVFARD--GATVVAIDVDGA----AEDLKRVAD----------------KVGGTALTL 266 (454)
T ss_dssp STTTTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEECGGG----HHHHHHHHH----------------HHTCEEEEC
T ss_pred cCCCCCEEEEeCCchHHHHHHHHHHHHC--CCEEEEEeCCcc----HHHHHHHHH----------------HcCCeEEEE
Confidence 3468999999999999999999999998 778899888542 233333211 124578999
Q ss_pred ecCCCCCCCCHHHHHhhcC--------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCcc
Q psy7542 137 DVAVPDLGISAEDRQMLSE--------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQ 198 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~--------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk 198 (762)
|+++++ +++++++ .+|+|||+|+.... .+.++..+++|+.|+.++.+++... .+..
T Consensus 267 Dvtd~~------~v~~~~~~~~~~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g 340 (454)
T 3u0b_A 267 DVTADD------AVDKITAHVTEHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGG 340 (454)
T ss_dssp CTTSTT------HHHHHHHHHHHHSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTC
T ss_pred ecCCHH------HHHHHHHHHHHHcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Confidence 999987 4544432 39999999998642 2456778999999999999999764 1457
Q ss_pred EEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cC
Q psy7542 199 LFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AG 274 (762)
Q Consensus 199 ~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~g 274 (762)
+||++||..+..... ....|+.||+..+.+++..+. .|
T Consensus 341 ~iV~iSS~a~~~g~~--------------------------------------g~~~YaasKaal~~l~~~la~e~~~~g 382 (454)
T 3u0b_A 341 RVIGLSSMAGIAGNR--------------------------------------GQTNYATTKAGMIGLAEALAPVLADKG 382 (454)
T ss_dssp EEEEECCHHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred EEEEEeChHhCCCCC--------------------------------------CCHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 999999985432110 015799999966666655543 48
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
++++.+.||.|..+.....+. ........ . .....+...+|+|++++.++..... ...++
T Consensus 383 I~vn~v~PG~v~T~~~~~~~~------~~~~~~~~-~-----------~~l~r~g~pedvA~~v~fL~s~~a~--~itG~ 442 (454)
T 3u0b_A 383 ITINAVAPGFIETKMTEAIPL------ATREVGRR-L-----------NSLFQGGQPVDVAELIAYFASPASN--AVTGN 442 (454)
T ss_dssp CEEEEEEECSBCC----------------CHHHHH-S-----------BTTSSCBCHHHHHHHHHHHHCGGGT--TCCSC
T ss_pred cEEEEEEcCcccChhhhhcch------hhHHHHHh-h-----------ccccCCCCHHHHHHHHHHHhCCccC--CCCCc
Confidence 999999999886653221110 00001000 0 1112345789999999988865433 12578
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
++++.++
T Consensus 443 ~i~vdGG 449 (454)
T 3u0b_A 443 TIRVCGQ 449 (454)
T ss_dssp EEEESSS
T ss_pred EEEECCc
Confidence 9998876
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-14 Score=155.47 Aligned_cols=172 Identities=13% Similarity=0.090 Sum_probs=121.9
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcc-hHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKN-SRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~-~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++|+||||||||+||++++++|++. +.+|+++.|...... ..+.++..- . . .....++.++.+|+
T Consensus 1 ~~k~vlVTGas~GIG~ala~~L~~~--G~~v~~v~r~~~~~~~~~~~~~~~~---------~-~--~~~~~~~~~~~~Dv 66 (327)
T 1jtv_A 1 ARTVVLITGCSSGIGLHLAVRLASD--PSQSFKVYATLRDLKTQGRLWEAAR---------A-L--ACPPGSLETLQLDV 66 (327)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHHTC--TTCCEEEEEEESCGGGTHHHHHHHH---------H-T--TCCTTSEEEEECCT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCceEEEEeecCcHHHHHHHHHHhh---------h-c--cCCCCceEEEEecC
Confidence 3689999999999999999999998 555566666543221 111111110 0 0 01125789999999
Q ss_pred CCCCCCCCHHHHHhhcCC-----ccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEE
Q psy7542 139 AVPDLGISAEDRQMLSET-----IHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYV 203 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~-----vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~v 203 (762)
++++ +++.+++. +|+|||+||.... .+.++..+++|+.|+.++++++... .+..+||++
T Consensus 67 ~d~~------~v~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~i 140 (327)
T 1jtv_A 67 RDSK------SVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVT 140 (327)
T ss_dssp TCHH------HHHHHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCHH------HHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 9865 66666553 8999999996532 1346778999999999999987321 256799999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~I 279 (762)
||..+.... |. ...|+.||+..|.+++..+. .|+++++
T Consensus 141 sS~~~~~~~----------~~----------------------------~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~ 182 (327)
T 1jtv_A 141 GSVGGLMGL----------PF----------------------------NDVYCASKFALEGLCESLAVLLLPFGVHLSL 182 (327)
T ss_dssp EEGGGTSCC----------TT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred CCcccccCC----------CC----------------------------ChHHHHHHHHHHHHHHHHHHHhhhcCcEEEE
Confidence 998654321 10 15799999999999988765 3899999
Q ss_pred EeeeeeccCC
Q psy7542 280 LRPSIIIPIW 289 (762)
Q Consensus 280 vRPs~V~G~~ 289 (762)
++||.|..+.
T Consensus 183 v~PG~v~T~~ 192 (327)
T 1jtv_A 183 IECGPVHTAF 192 (327)
T ss_dssp EEECCBCC--
T ss_pred EEeCcccChH
Confidence 9999887654
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.3e-14 Score=145.13 Aligned_cols=224 Identities=11% Similarity=0.036 Sum_probs=140.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+||||||+|+||++++++|++. +.+|+++.|..... +.+.+ +. . ...++..+ |..+-
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~---~~~~~-l~--------~------~~~~~~~~--d~~~v 59 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEA--GHTVACHDESFKQK---DELEA-FA--------E------TYPQLKPM--SEQEP 59 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHT--TCEEEECCGGGGSH---HHHHH-HH--------H------HCTTSEEC--CCCSH
T ss_pred eEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCHHHH---HHHHH-HH--------h------cCCcEEEE--CHHHH
Confidence 58999999999999999999998 77889998864321 12222 10 0 01233333 32211
Q ss_pred CCCCCHHHHHhhcCCccEEEEccccc-Cc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEEeCCcccC
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATV-RF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVSTAYCHP 210 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v-~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vSSay~~~ 210 (762)
. --.+...+....+|+|||+||.. .. .+.++..+++|+.|+.++++++... .+..++|++||..+..
T Consensus 60 ~--~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 137 (254)
T 1zmt_A 60 A--ELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG 137 (254)
T ss_dssp H--HHHHHHHHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS
T ss_pred H--HHHHHHHHHhCCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCccccc
Confidence 0 00011112224799999999976 31 1346778999999999999988531 2457999999986543
Q ss_pred CCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEEEeeeeec
Q psy7542 211 KEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMILRPSIII 286 (762)
Q Consensus 211 ~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~IvRPs~V~ 286 (762)
.. |. ...|+.||+..+.+.+..+.. |+.+++++||.|+
T Consensus 138 ~~----------~~----------------------------~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~ 179 (254)
T 1zmt_A 138 PW----------KE----------------------------LSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLH 179 (254)
T ss_dssp CC----------TT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBC
T ss_pred CC----------CC----------------------------chHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccc
Confidence 21 00 157999999999998877653 8999999999998
Q ss_pred cCCCCCCCCCCCC-C-CCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 287 PIWKDPLPGWTDN-I-NGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 287 G~~~eP~pGWidn-~-~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
|+.... +.+. . ............. .....+...+|+|++++.++..... ...++++++.++
T Consensus 180 ~~~~~~---~~~T~~~~~~~~~~~~~~~~---------~p~~~~~~p~dvA~~v~~l~s~~~~--~~tG~~~~vdgG 242 (254)
T 1zmt_A 180 SEDSPY---FYPTEPWKTNPEHVAHVKKV---------TALQRLGTQKELGELVAFLASGSCD--YLTGQVFWLAGG 242 (254)
T ss_dssp CBTCCS---SCBHHHHTTCHHHHHHHHHH---------SSSSSCBCHHHHHHHHHHHHTTSCG--GGTTCEEEESTT
T ss_pred cccccc---cCCCcccccChHHHHHHhcc---------CCCCCCcCHHHHHHHHHHHhCcccC--CccCCEEEECCC
Confidence 764321 0000 0 0000111111110 0112367899999999998875432 114789999877
|
| >1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=8.2e-15 Score=135.28 Aligned_cols=100 Identities=25% Similarity=0.409 Sum_probs=80.8
Q ss_pred CCCCccccccceeeecCCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHH
Q psy7542 516 GPKENCISVSGYRLIECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQK 595 (762)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (762)
.+++++|+ .+.. .++|++|.|+| ..|.|.||||||..||+ ++
T Consensus 4 ~~~~v~I~--~~~~---~~~~~~Y~I~v----~~~~V~RRYsdF~~L~~-----------------------------~L 45 (117)
T 1kmd_A 4 EKLRIKVD--DVKI---NPKYVLYGVST----PNKRLYKRYSEFWKLKT-----------------------------RL 45 (117)
T ss_dssp CCCCCEEE--EEEE---CSSCEEEEEEC----SSCCEEECHHHHHHHHH-----------------------------HH
T ss_pred CCEEEEEC--Ccee---cCCEEEEEEEE----ceEEEEechHHHHHHHH-----------------------------HH
Confidence 34455444 4444 57899999999 48999999999999998 66
Q ss_pred hhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCC-CCCCCcC--------CCCChhHHHHHHHHH
Q psy7542 596 KRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTP-SFPPKKI--------RSNQPKVLDERRHLL 666 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~ 666 (762)
++.++. ..| .||+|++ .+.+++++|+||.+|
T Consensus 46 ~~~~~~----------------------------------------~~P~~lP~K~~~~~~~~~~~~~~~~~ie~Rr~~L 85 (117)
T 1kmd_A 46 ERDVGS----------------------------------------TIPYDFPEKPGVLDRRWQRRYDDPEMIDERRIGL 85 (117)
T ss_dssp HHHHCS----------------------------------------CCCCCCCCCCCSSCSTTCCCTTCHHHHHHHHTTH
T ss_pred HHHcCc----------------------------------------cCCCCCCCCCEecccccccCCCCHHHHHHHHHHH
Confidence 666533 678 9999997 478999999999999
Q ss_pred HHHHHHHHhcCCC-----hHHHHhhhCCCCCC
Q psy7542 667 EIYLKEMFKFGPS-----RNQVLAFLGVNSKN 693 (762)
Q Consensus 667 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 693 (762)
|.||+.++..... ...+.+||.+++.|
T Consensus 86 e~yL~~l~~~p~l~~~~~s~~l~~FL~~~~~~ 117 (117)
T 1kmd_A 86 ERFLNELYNDRFDSRWRDTKIAQDFLQLSKPN 117 (117)
T ss_dssp HHHHHHHHCCSSCCHHHHSHHHHHHTTCCCCC
T ss_pred HHHHHHHHhCcchhhhhcCHHHHHhcCCCCCC
Confidence 9999999987632 28999999998654
|
| >3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=135.58 Aligned_cols=105 Identities=26% Similarity=0.420 Sum_probs=84.0
Q ss_pred CCCccccccceeee--cCCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHH
Q psy7542 517 PKENCISVSGYRLI--ECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQ 594 (762)
Q Consensus 517 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (762)
+..+.|+....+.. +..++|++|.|+|......|.|.||||||..||+ +
T Consensus 15 ~~~v~ips~~v~I~~~~~~~~y~~Y~I~v~~~~~~~~V~RRYSdF~~L~~-----------------------------~ 65 (130)
T 3p0c_A 15 TENLYFQSMEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHE-----------------------------K 65 (130)
T ss_dssp --CCCEECCEEEEEEEECSSSSCEEEEEEECSSCEEEEEEEHHHHHHHHH-----------------------------H
T ss_pred CceeEeeeeEEEEEeccccCCEEEEEEEEEECCeEEEEEehHHHHHHHHH-----------------------------H
Confidence 34445554443333 3468999999999999999999999999999998 6
Q ss_pred HhhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-CCCChhHHHHHHHHHHHHHHHH
Q psy7542 595 KKRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-RSNQPKVLDERRHLLEIYLKEM 673 (762)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 673 (762)
+++.++. ..|.||||++ .+++++++|+||.+||.||+.+
T Consensus 66 L~~~~~~----------------------------------------~~p~lP~K~~~g~~~~~~ie~Rr~~Le~yL~~l 105 (130)
T 3p0c_A 66 LVAERKI----------------------------------------DKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKL 105 (130)
T ss_dssp HHHTTSS----------------------------------------CTTSCCCCCCCSCCCSCSHHHHHHHHHHHHHHH
T ss_pred HHHHcCC----------------------------------------CCCCCCCccccccCCHHHHHHHHHHHHHHHHHH
Confidence 6665532 4578999996 5568999999999999999999
Q ss_pred HhcCCCh--HHHHhhhCCC
Q psy7542 674 FKFGPSR--NQVLAFLGVN 690 (762)
Q Consensus 674 ~~~~~~~--~~~~~~~~~~ 690 (762)
++....+ ..+..||..+
T Consensus 106 ~~~p~l~~s~~l~~FL~~~ 124 (130)
T 3p0c_A 106 LAAFPGVTPRVLAHFLHFH 124 (130)
T ss_dssp HHTSCSEECHHHHHHHHSC
T ss_pred HcChhhhcCHHHHHHhCCC
Confidence 9987766 9999999987
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-13 Score=139.97 Aligned_cols=226 Identities=12% Similarity=0.086 Sum_probs=151.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||++|||||++.||+.++++|++. +.+|++..|..... +.++++. ....++..+.+|+
T Consensus 5 L~gKvalVTGas~GIG~aia~~la~~--Ga~Vv~~~r~~~~~---~~~~~~~---------------~~~~~~~~~~~Dv 64 (258)
T 4gkb_A 5 LQDKVVIVTGGASGIGGAISMRLAEE--RAIPVVFARHAPDG---AFLDALA---------------QRQPRATYLPVEL 64 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCCCH---HHHHHHH---------------HHCTTCEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCcccH---HHHHHHH---------------hcCCCEEEEEeec
Confidence 58999999999999999999999998 78889999976542 2222221 1236788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVYV 203 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~v 203 (762)
++++ ++++++ ..+|++||+||.... .+.++..+++|+.|+..+.+++... .+-.++|++
T Consensus 65 ~~~~------~v~~~v~~~~~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVni 138 (258)
T 4gkb_A 65 QDDA------QCRDAVAQTIATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNI 138 (258)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 9875 444443 368999999996431 2457778999999999998887542 112589999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~I 279 (762)
||..+..... ....|+.||+..+.+.+..+. .|+++..
T Consensus 139 sS~~~~~~~~--------------------------------------~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~ 180 (258)
T 4gkb_A 139 SSKTAVTGQG--------------------------------------NTSGYCASKGAQLALTREWAVALREHGVRVNA 180 (258)
T ss_dssp CCTHHHHCCS--------------------------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEE
T ss_pred eehhhccCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHhcccCeEEEE
Confidence 9986532211 015799999988888877665 3999999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
|-||.|-.+..+. |......+...........+ ...-+...+|+|++++.++...... -.++++++.
T Consensus 181 V~PG~i~T~~~~~---~~~~~~~~~~~~~~~~~~~p--------lg~R~g~peeiA~~v~fLaS~~a~~--iTG~~i~VD 247 (258)
T 4gkb_A 181 VIPAEVMTPLYRN---WIATFEDPEAKLAEIAAKVP--------LGRRFTTPDEIADTAVFLLSPRASH--TTGEWLFVD 247 (258)
T ss_dssp EEECSBCCSCC--------------CHHHHHHTTCT--------TTTSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEES
T ss_pred EecCCCCChhHhh---hhhcccChHHHHHHHHhcCC--------CCCCCcCHHHHHHHHHHHhCchhcC--ccCCeEEEC
Confidence 9999886553221 11111111112222221110 0013566799999999888655431 257899988
Q ss_pred CC
Q psy7542 360 AN 361 (762)
Q Consensus 360 s~ 361 (762)
+|
T Consensus 248 GG 249 (258)
T 4gkb_A 248 GG 249 (258)
T ss_dssp TT
T ss_pred CC
Confidence 76
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.9e-14 Score=146.22 Aligned_cols=167 Identities=17% Similarity=0.237 Sum_probs=121.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+||||||+|+||++++++|++. +.+|+++.|.. ++++++.+ .++ ....++.++.+|+
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~r~~------~~~~~~~~-----~~~------~~~~~~~~~~~Dv 63 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKA--GATVYITGRHL------DTLRVVAQ-----EAQ------SLGGQCVPVVCDS 63 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHH------HHSSEEEEEECCT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH-----HHH------HcCCceEEEECCC
Confidence 47899999999999999999999998 67889998863 22222211 111 1125788999999
Q ss_pred CCCCCCCCHHHHHhh--------cCCccEEEEccc--cc--------Cc----cccHHHHHHHhHHHHHHHHHHHHHc--
Q psy7542 139 AVPDLGISAEDRQML--------SETIHIVYHIAA--TV--------RF----DDYMQTYVFLNTRGTRDMLNLSKQM-- 194 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l--------~~~vDiViH~AA--~v--------~f----~~~l~~~~~~NV~GT~~LLelA~~~-- 194 (762)
++++ +++.+ ...+|++||+|+ .. .+ .+.++..+++|+.|+..+.+++...
T Consensus 64 ~~~~------~v~~~~~~~~~~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 137 (260)
T 2qq5_A 64 SQES------EVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMV 137 (260)
T ss_dssp TSHH------HHHHHHHHHHHHHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHG
T ss_pred CCHH------HHHHHHHHHHHhcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence 9865 44433 346899999994 21 11 2456778999999998887776531
Q ss_pred -CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH-
Q psy7542 195 -IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME- 272 (762)
Q Consensus 195 -~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~- 272 (762)
.+..++|++||..+.... +. ..|+.||+..+.+.+..+.
T Consensus 138 ~~~~g~iv~isS~~~~~~~----------~~-----------------------------~~Y~asK~a~~~~~~~la~e 178 (260)
T 2qq5_A 138 PAGQGLIVVISSPGSLQYM----------FN-----------------------------VPYGVGKAACDKLAADCAHE 178 (260)
T ss_dssp GGTCCEEEEECCGGGTSCC----------SS-----------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcEEEEEcChhhcCCC----------CC-----------------------------CchHHHHHHHHHHHHHHHHH
Confidence 245799999998654210 11 4799999999999887764
Q ss_pred ---cCCCEEEEeeeeeccCC
Q psy7542 273 ---AGMPCMILRPSIIIPIW 289 (762)
Q Consensus 273 ---~glpv~IvRPs~V~G~~ 289 (762)
.|+++++++||.|..+.
T Consensus 179 ~~~~gi~v~~v~PG~v~T~~ 198 (260)
T 2qq5_A 179 LRRHGVSCVSLWPGIVQTEL 198 (260)
T ss_dssp HGGGTCEEEEEECCCSCTTT
T ss_pred hccCCeEEEEEecCccccHH
Confidence 28999999999886653
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=8.3e-15 Score=158.54 Aligned_cols=177 Identities=16% Similarity=0.125 Sum_probs=118.1
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCC----C-cEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCE----N-VKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp----~-v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
.++|+||||+||+|++++..|+..+. . .+|.++++... .+++.... . .+. ...+.++
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~----~~~~~g~~----~-dl~--------~~~~~~~- 65 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQA----MKALEGVV----M-ELE--------DCAFPLL- 65 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGG----HHHHHHHH----H-HHH--------TTTCTTE-
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCc----hhhccchh----h-hhh--------ccccccc-
Confidence 46899999999999999999998742 1 27888887531 11111100 0 000 0112223
Q ss_pred eecCCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCcc-EEEEEeCCcccCCCc
Q psy7542 136 GDVAVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQ-LFVYVSTAYCHPKEK 213 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk-~fV~vSSay~~~~~~ 213 (762)
+|+.+.. ++.+.++++|+|||+||..+. ..+..+.++.|+.+|.++++++++..+.+ +|+++|+.... ..
T Consensus 66 ~di~~~~------~~~~a~~~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~--~~ 137 (327)
T 1y7t_A 66 AGLEATD------DPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT--NA 137 (327)
T ss_dssp EEEEEES------CHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH--HH
T ss_pred CCeEecc------ChHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhh--hH
Confidence 6776644 466777899999999998753 34556789999999999999999873143 67766653100 00
Q ss_pred ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCC
Q psy7542 214 VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWK 290 (762)
Q Consensus 214 ~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~ 290 (762)
++.++.. .+.+| .+.|+.||..+|+++..+++. |++++++||++|+|+..
T Consensus 138 ~~~~~~~-~~~~p--------------------------~~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~ 188 (327)
T 1y7t_A 138 LIAYKNA-PGLNP--------------------------RNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHS 188 (327)
T ss_dssp HHHHHTC-TTSCG--------------------------GGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSS
T ss_pred HHHHHHc-CCCCh--------------------------hheeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCC
Confidence 1111100 00111 157999999999999888876 99999999999999864
|
| >1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-14 Score=138.55 Aligned_cols=104 Identities=21% Similarity=0.352 Sum_probs=84.1
Q ss_pred cccccceeeec-CCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhc
Q psy7542 521 CISVSGYRLIE-CEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNC 599 (762)
Q Consensus 521 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (762)
.|+|.+++... ..+.|++|.|+|......|.|.||||||..||+ ++++.+
T Consensus 9 ~v~I~~~~~~~~~~~~~~~Y~I~v~~~~~~~~V~RRYsdF~~Lh~-----------------------------~L~~~~ 59 (154)
T 1xte_A 9 SVSIPSSDEHREKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYN-----------------------------SLKKQF 59 (154)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEHHHHHHHHH-----------------------------HHHHHC
T ss_pred EEEECCcEEEecCCCCEEEEEEEEEECCEEEEEEeeHHHHHHHHH-----------------------------HHHHHC
Confidence 34555665443 468999999999999999999999999999998 666655
Q ss_pred hhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC--CCChhHHHHHHHHHHHHHHHHHhcC
Q psy7542 600 KYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR--SNQPKVLDERRHLLEIYLKEMFKFG 677 (762)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (762)
.. ...| ||+|++. +.+++++|+||..||.||+.++...
T Consensus 60 p~---------------------------------------~~~p-lP~K~~~g~~~~~~~ie~Rr~~Le~yL~~l~~~p 99 (154)
T 1xte_A 60 PA---------------------------------------MALK-IPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYP 99 (154)
T ss_dssp GG---------------------------------------GCCC-CCCSCCSSCTTCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred CC---------------------------------------Cccc-CCCccccCCCCCHHHHHHHHHHHHHHHHHHHcCh
Confidence 33 1234 9999974 5799999999999999999999875
Q ss_pred CCh--HHHHhhhCCCCCC
Q psy7542 678 PSR--NQVLAFLGVNSKN 693 (762)
Q Consensus 678 ~~~--~~~~~~~~~~~~~ 693 (762)
..+ ..+..||..+...
T Consensus 100 ~l~~s~~l~~FL~~~~~~ 117 (154)
T 1xte_A 100 ELYNHPDVRAFLQMDSPR 117 (154)
T ss_dssp HHHTSHHHHHHTTTTCGG
T ss_pred hhccChHHHHHhCCCCCc
Confidence 444 8999999998544
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=149.33 Aligned_cols=212 Identities=11% Similarity=0.112 Sum_probs=138.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCC---cchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKN---KNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~---~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
++||+|+||||+|+||++++++|++. +.+|++..|.... ....+++++..+ .++.. .. .+.
T Consensus 7 l~gk~~lVTGas~GIG~~~a~~La~~--Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~-----~l~~~------~~---~~~ 70 (319)
T 1gz6_A 7 FDGRVVLVTGAGGGLGRAYALAFAER--GALVVVNDLGGDFKGVGKGSSAADKVVE-----EIRRR------GG---KAV 70 (319)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEECCCBCTTSCBCCSHHHHHHHH-----HHHHT------TC---EEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEcCCcccccccCCHHHHHHHHH-----HHHhh------CC---eEE
Confidence 57899999999999999999999998 6788887663210 000122222111 11111 11 134
Q ss_pred eecCCCCCCCCHHHHHhh-------cCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCcc
Q psy7542 136 GDVAVPDLGISAEDRQML-------SETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQ 198 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l-------~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk 198 (762)
+|+++.+ +++.+ ...+|+|||+||.... .+.++..+++|+.|+.++++++... .+..
T Consensus 71 ~D~~~~~------~~~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g 144 (319)
T 1gz6_A 71 ANYDSVE------AGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYG 144 (319)
T ss_dssp EECCCGG------GHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred EeCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC
Confidence 7998865 23322 3479999999997542 1356778999999999998887431 2457
Q ss_pred EEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----C
Q psy7542 199 LFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----G 274 (762)
Q Consensus 199 ~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----g 274 (762)
++|++||..+.... + ....|+.||+..+.+.+..+.. |
T Consensus 145 rIV~vsS~~~~~~~----------~----------------------------~~~~Y~aSK~a~~~~~~~la~el~~~g 186 (319)
T 1gz6_A 145 RIIMTASASGIYGN----------F----------------------------GQANYSAAKLGLLGLANTLVIEGRKNN 186 (319)
T ss_dssp EEEEECCHHHHHCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHTGGGT
T ss_pred EEEEECChhhccCC----------C----------------------------CCHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 99999997432110 0 0157999999999998887653 8
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
+.+++++||.+ .+.. .... +. ....++..+|+|.+++.++..... ..++
T Consensus 187 I~vn~v~PG~~-t~~~-------~~~~-~~-------------------~~~~~~~p~dvA~~~~~l~s~~~~---~tG~ 235 (319)
T 1gz6_A 187 IHCNTIAPNAG-SRMT-------ETVM-PE-------------------DLVEALKPEYVAPLVLWLCHESCE---ENGG 235 (319)
T ss_dssp EEEEEEEEECC-STTT-------GGGS-CH-------------------HHHHHSCGGGTHHHHHHHTSTTCC---CCSC
T ss_pred EEEEEEeCCCc-cccc-------cccC-Ch-------------------hhhccCCHHHHHHHHHHHhCchhh---cCCC
Confidence 99999999976 2110 0000 10 112346788999999988865322 2478
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
+|++.++
T Consensus 236 ~~~v~GG 242 (319)
T 1gz6_A 236 LFEVGAG 242 (319)
T ss_dssp EEEEETT
T ss_pred EEEECCC
Confidence 8988776
|
| >1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-14 Score=136.22 Aligned_cols=116 Identities=15% Similarity=0.230 Sum_probs=87.7
Q ss_pred CCccccccceeeecCCCCeEEEEEEEEEc-CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHh
Q psy7542 518 KENCISVSGYRLIECEKPYYVYVIHVRMF-QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKK 596 (762)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (762)
....++|.+++.......|++|+|+|... +..|.|.||||||..||+ +++
T Consensus 19 ~~i~v~I~~~e~~~~~~~~~vY~I~v~~~~~~~~~V~RRYsdF~~Lh~-----------------------------~L~ 69 (143)
T 1h6h_A 19 VAISANIADIEEKRGFTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQS-----------------------------KLE 69 (143)
T ss_dssp CEEEEEEEEEEEECSSSCEEEEEEEEEETTSCEEEEEEEHHHHHHHHH-----------------------------HHH
T ss_pred CeEEEEEcCccccCCCCCeEEEEEEEEEcCCCEEEEEeeHHHHHHHHH-----------------------------HHH
Confidence 44556666666555556899999999876 679999999999999998 555
Q ss_pred hhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHHhc
Q psy7542 597 RNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKF 676 (762)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (762)
+.+... + | ..+.....|.||+|++..++++++|+||.+||.||+.+++.
T Consensus 70 ~~~p~~----------------~-------------~--~~~~~~~lP~lP~K~~~~~~~~~ie~Rr~~Le~yL~~ll~~ 118 (143)
T 1h6h_A 70 ERFGPD----------------S-------------K--SSALACTLPTLPAKVYVGVKQEIAEMRIPALNAYMKSLLSL 118 (143)
T ss_dssp HHHSTT----------------C-------------S--CGGGCCCCCCCCCCCCSSCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHCccc----------------c-------------c--cCCCCCCcccCCCCcccCcCHHHHHHHHHHHHHHHHHHHcC
Confidence 554210 0 0 00011246999999987679999999999999999999987
Q ss_pred CC-Ch--HHHHhhhCCCCCC
Q psy7542 677 GP-SR--NQVLAFLGVNSKN 693 (762)
Q Consensus 677 ~~-~~--~~~~~~~~~~~~~ 693 (762)
.+ .+ ..|++||......
T Consensus 119 p~~l~~s~~~~~Fl~~~~~d 138 (143)
T 1h6h_A 119 PVWVLMDEDVRIFFYQSPYD 138 (143)
T ss_dssp CHHHHTCHHHHHHHSCCHHH
T ss_pred CHhhhcCHHHHHHhCCCccc
Confidence 76 22 8999999987543
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-12 Score=135.24 Aligned_cols=208 Identities=13% Similarity=0.113 Sum_probs=146.8
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|+||||||++.||+.++++|++. |.+|++..|.. ++++++.+ ...++..+.+|+++
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~--Ga~V~~~~~~~------~~~~~~~~---------------~~~~~~~~~~Dv~~ 58 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEA--GDKVCFIDIDE------KRSADFAK---------------ERPNLFYFHGDVAD 58 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHT---------------TCTTEEEEECCTTS
T ss_pred CCEEEEecCCCHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHHH---------------hcCCEEEEEecCCC
Confidence 489999999999999999999999 78889998863 33443321 23578899999998
Q ss_pred CCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEEEe
Q psy7542 141 PDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVYVS 204 (762)
Q Consensus 141 ~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~vS 204 (762)
++ +++.++ ..+|++||+|+.... .+.++..+++|+.|+..+.+++... ++-.++|++|
T Consensus 59 ~~------~v~~~v~~~~~~~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInis 132 (247)
T 3ged_A 59 PL------TLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIA 132 (247)
T ss_dssp HH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEe
Confidence 76 555443 368999999987542 2567889999999999998887542 1226899999
Q ss_pred CCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---CCCEEEEe
Q psy7542 205 TAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---GMPCMILR 281 (762)
Q Consensus 205 Say~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---glpv~IvR 281 (762)
|..+..... . ...|+.||+..+.+.+..+.. ++.+..+-
T Consensus 133 S~~~~~~~~----------~----------------------------~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~ 174 (247)
T 3ged_A 133 STRAFQSEP----------D----------------------------SEAYASAKGGIVALTHALAMSLGPDVLVNCIA 174 (247)
T ss_dssp CGGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred ecccccCCC----------C----------------------------CHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 986643211 1 147999999888877766653 89999999
Q ss_pred eeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 282 PSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 282 Ps~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
||.|-.+..+. . ..... ... ...-+...+|+|++++.++..... .++++.+.+|
T Consensus 175 PG~i~t~~~~~-------~--~~~~~----~~~---------Pl~R~g~pediA~~v~fL~s~~~i----TG~~i~VDGG 228 (247)
T 3ged_A 175 PGWINVTEQQE-------F--TQEDC----AAI---------PAGKVGTPKDISNMVLFLCQQDFI----TGETIIVDGG 228 (247)
T ss_dssp ECSBCCCC----------C--CHHHH----HTS---------TTSSCBCHHHHHHHHHHHHHCSSC----CSCEEEESTT
T ss_pred cCcCCCCCcHH-------H--HHHHH----hcC---------CCCCCcCHHHHHHHHHHHHhCCCC----CCCeEEECcC
Confidence 99774432110 0 11111 111 011245679999999998875433 5889999877
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=143.66 Aligned_cols=224 Identities=13% Similarity=0.056 Sum_probs=147.2
Q ss_pred cCCCEEEEECC--CChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGA--SGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGA--TGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
+++|+|+|||| +|+||++++++|++. +.+|+++.|.... .++++.+ ....++.++.+
T Consensus 5 l~~k~vlVTGa~~s~gIG~aia~~l~~~--G~~V~~~~r~~~~-----~~~~~~~--------------~~~~~~~~~~~ 63 (269)
T 2h7i_A 5 LDGKRILVSGIITDSSIAFHIARVAQEQ--GAQLVLTGFDRLR-----LIQRITD--------------RLPAKAPLLEL 63 (269)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHT--TCEEEEEECSCHH-----HHHHHHT--------------TSSSCCCEEEC
T ss_pred cCCCEEEEECCCCCCchHHHHHHHHHHC--CCEEEEEecChHH-----HHHHHHH--------------hcCCCceEEEc
Confidence 57899999999 999999999999998 7788999986421 1222211 11346888999
Q ss_pred ecCCCCCCCCHHHHHhhcC----------CccEEEEcccccC--------c----cccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 137 DVAVPDLGISAEDRQMLSE----------TIHIVYHIAATVR--------F----DDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~----------~vDiViH~AA~v~--------f----~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
|+++++ +++++++ .+|++||+||... + .+.++..+++|+.|+..+++++...
T Consensus 64 Dv~~~~------~v~~~~~~~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~ 137 (269)
T 2h7i_A 64 DVQNEE------HLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPI 137 (269)
T ss_dssp CTTCHH------HHHHHHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred cCCCHH------HHHHHHHHHHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999865 5555544 7999999999754 1 1345678999999999999999753
Q ss_pred -CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc
Q psy7542 195 -IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA 273 (762)
Q Consensus 195 -~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~ 273 (762)
..-.++|++||..+.+. |. ...|+.||+..+.+.+..+..
T Consensus 138 ~~~~g~iv~iss~~~~~~-----------~~----------------------------~~~Y~asKaa~~~l~~~la~e 178 (269)
T 2h7i_A 138 MNPGGSIVGMDFDPSRAM-----------PA----------------------------YNWMTVAKSALESVNRFVARE 178 (269)
T ss_dssp EEEEEEEEEEECCCSSCC-----------TT----------------------------THHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCeEEEEcCcccccc-----------Cc----------------------------hHHHHHHHHHHHHHHHHHHHH
Confidence 11258999998753210 10 157999999999988877652
Q ss_pred ----CCCEEEEeeeeeccCCCCCCCCCCCCCCCch------HHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhh
Q psy7542 274 ----GMPCMILRPSIIIPIWKDPLPGWTDNINGPT------GLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTW 343 (762)
Q Consensus 274 ----glpv~IvRPs~V~G~~~eP~pGWidn~~gp~------~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~ 343 (762)
|+.+++++||.|-.+..... ........ .+........ + ..+.+...+|+|++++.++.
T Consensus 179 ~~~~gi~vn~v~PG~v~T~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------p-~~rr~~~p~dvA~~v~~L~s 247 (269)
T 2h7i_A 179 AGKYGVRSNLVAAGPIRTLAMSAI---VGGALGEEAGAQIQLLEEGWDQRA-------P-IGWNMKDATPVAKTVCALLS 247 (269)
T ss_dssp HHTTTCEEEEEEECCCCCHHHHHH---HTTTTCHHHHHHHHHHHHHHHHHC-------T-TCCCTTCCHHHHHHHHHHHS
T ss_pred hcccCcEEEEEecCcccchhhhcc---ccccchhhHHHHHHHHHHhhhccC-------C-cccCCCCHHHHHHHHHHHhC
Confidence 89999999997754310000 00000000 0000000000 0 00135677999999999886
Q ss_pred cccCCCCCCceEEEecCC
Q psy7542 344 NFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 344 ~~~~~~~~~~~iyNi~s~ 361 (762)
.... ...++++++.++
T Consensus 248 ~~~~--~itG~~i~vdGG 263 (269)
T 2h7i_A 248 DWLP--ATTGDIIYADGG 263 (269)
T ss_dssp SSCT--TCCSEEEEESTT
T ss_pred chhc--cCcceEEEecCC
Confidence 5432 125788888776
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=144.31 Aligned_cols=166 Identities=17% Similarity=0.133 Sum_probs=119.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHH---cCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILR---TCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~---~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
+++|+|+||||+|+||++++++|++ . +.+|+++.|.. ++++++.+ .++.. ....++.++.
T Consensus 4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~--G~~V~~~~r~~------~~~~~~~~-----~l~~~----~~~~~~~~~~ 66 (259)
T 1oaa_A 4 LGCAVCVLTGASRGFGRALAPQLARLLSP--GSVMLVSARSE------SMLRQLKE-----ELGAQ----QPDLKVVLAA 66 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCT--TCEEEEEESCH------HHHHHHHH-----HHHHH----CTTSEEEEEE
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHhhcC--CCeEEEEeCCH------HHHHHHHH-----HHHhh----CCCCeEEEEe
Confidence 5789999999999999999999998 6 67899999863 22322211 11111 0124688999
Q ss_pred eecCCCCCCCCHHHHHhhc----C-----Ccc--EEEEcccccC-----c-----cccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 136 GDVAVPDLGISAEDRQMLS----E-----TIH--IVYHIAATVR-----F-----DDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l~----~-----~vD--iViH~AA~v~-----f-----~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
+|+++++ +++.++ + .+| ++||+||... + .+.++..+++|+.|+.++++++...
T Consensus 67 ~Dv~~~~------~v~~~~~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~ 140 (259)
T 1oaa_A 67 ADLGTEA------GVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNA 140 (259)
T ss_dssp CCTTSHH------HHHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred cCCCCHH------HHHHHHHHHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999865 444433 2 467 9999999742 1 1346678999999999999998753
Q ss_pred ---C--CccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHH
Q psy7542 195 ---I--HLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTE 269 (762)
Q Consensus 195 ---~--~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~ 269 (762)
. +..++|++||..+.... |. ...|+.||+..+.+.+.
T Consensus 141 ~~~~~~~~g~iv~isS~~~~~~~----------~~----------------------------~~~Y~asKaa~~~~~~~ 182 (259)
T 1oaa_A 141 FQDSPGLSKTVVNISSLCALQPY----------KG----------------------------WGLYCAGKAARDMLYQV 182 (259)
T ss_dssp SCCCTTCEEEEEEECCGGGTSCC----------TT----------------------------CHHHHHHHHHHHHHHHH
T ss_pred HhhccCCCceEEEEcCchhcCCC----------CC----------------------------ccHHHHHHHHHHHHHHH
Confidence 1 23579999998664321 10 15799999999999998
Q ss_pred HHHc--CCCEEEEeeeee
Q psy7542 270 YMEA--GMPCMILRPSII 285 (762)
Q Consensus 270 ~~~~--glpv~IvRPs~V 285 (762)
.+.. ++.+..+.||.|
T Consensus 183 la~e~~~i~vn~v~PG~v 200 (259)
T 1oaa_A 183 LAAEEPSVRVLSYAPGPL 200 (259)
T ss_dssp HHHHCTTEEEEEEECCSB
T ss_pred HHhhCCCceEEEecCCCc
Confidence 8774 577888888765
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.6e-13 Score=137.49 Aligned_cols=223 Identities=14% Similarity=0.142 Sum_probs=151.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+++||||++.||+.+++.|++. +.+|++..|.. ++++++.+ .+ .....++..+.+|+
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~--Ga~Vv~~~~~~------~~~~~~~~-----~i------~~~g~~~~~~~~Dv 65 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALN--DSIVVAVELLE------DRLNQIVQ-----EL------RGMGKEVLGVKADV 65 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HH------HHTTCCEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCH------HHHHHHHH-----HH------HhcCCcEEEEEccC
Confidence 58999999999999999999999998 78889998853 33433221 11 12246789999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccC----c----cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVR----F----DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~----f----~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
++++ ++++++ ..+|++||+||... + .+.++..+++|+.|+..+.+++... .+-.++
T Consensus 66 t~~~------~v~~~~~~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~I 139 (254)
T 4fn4_A 66 SKKK------DVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVI 139 (254)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEE
Confidence 9876 555554 36899999999643 2 2457789999999999998887642 234689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... . ...|+.||+....+.+..+. .|++
T Consensus 140 VnisS~~g~~~~~----------~----------------------------~~~Y~asKaal~~ltr~lA~ela~~gIr 181 (254)
T 4fn4_A 140 VNTASIAGIRGGF----------A----------------------------GAPYTVAKHGLIGLTRSIAAHYGDQGIR 181 (254)
T ss_dssp EEECCGGGTCSSS----------S----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEechhhcCCCC----------C----------------------------ChHHHHHHHHHHHHHHHHHHHhhhhCeE
Confidence 9999987643211 0 14799999988777776655 3899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHH-HHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGL-LIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~l-i~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
+..|-||.|-.+... ....+... ......... ...-+...+|+|++++.++.....- -.+++
T Consensus 182 VN~V~PG~i~T~~~~-------~~~~~~~~~~~~~~~~~~--------~~~R~g~pediA~~v~fLaSd~a~~--iTG~~ 244 (254)
T 4fn4_A 182 AVAVLPGTVKTNIGL-------GSSKPSELGMRTLTKLMS--------LSSRLAEPEDIANVIVFLASDEASF--VNGDA 244 (254)
T ss_dssp EEEEEECSBCSSCTT-------SCSSCCHHHHHHHHHHHT--------TCCCCBCHHHHHHHHHHHHSGGGTT--CCSCE
T ss_pred EEEEEeCCCCCcccc-------cccCCcHHHHHHHHhcCC--------CCCCCcCHHHHHHHHHHHhCchhcC--CcCCE
Confidence 999999988554321 11111111 111111000 0012456799999999888655431 25788
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+.+.+|
T Consensus 245 i~VDGG 250 (254)
T 4fn4_A 245 VVVDGG 250 (254)
T ss_dssp EEESTT
T ss_pred EEeCCC
Confidence 888776
|
| >3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.8e-14 Score=131.32 Aligned_cols=102 Identities=28% Similarity=0.367 Sum_probs=78.4
Q ss_pred CCccccccceeeec-CCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHh
Q psy7542 518 KENCISVSGYRLIE-CEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKK 596 (762)
Q Consensus 518 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (762)
.+++|+........ ..++|++|.|+|. ..|.|.||||||..||+ +++
T Consensus 4 l~v~Ip~~~~~~~~~g~~~y~~Y~I~v~---~~~~V~RRYsdF~~L~~-----------------------------~L~ 51 (115)
T 3lui_A 4 MHFSIPETESRSGDSGGSAYVAYNIHVN---GVLHCRVRYSQLLGLHE-----------------------------QLR 51 (115)
T ss_dssp -CEEEEEEEEEC-----CCEEEEEEEET---TEEEEEEEHHHHHHHHH-----------------------------HHH
T ss_pred EEEEECCeEEecCCCCCCCEEEEEEEEC---CeEEEEecHHHHHHHHH-----------------------------HHH
Confidence 34455544443322 2389999999984 57999999999999998 666
Q ss_pred hhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHHhc
Q psy7542 597 RNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKF 676 (762)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (762)
+.++. ...|.||+|++.+.+++++|+||..||.||+.++..
T Consensus 52 ~~~~~---------------------------------------~~~P~lP~K~~~~~~~~~ie~Rr~~Le~yL~~l~~~ 92 (115)
T 3lui_A 52 KEYGA---------------------------------------NVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQD 92 (115)
T ss_dssp HHHCS---------------------------------------TTSCCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHcCC---------------------------------------CcCCCCCCCcccCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 65532 257999999998899999999999999999999976
Q ss_pred CCCh--HHHHhhhCCC
Q psy7542 677 GPSR--NQVLAFLGVN 690 (762)
Q Consensus 677 ~~~~--~~~~~~~~~~ 690 (762)
...+ ..+..||...
T Consensus 93 p~l~~s~~~~~FL~~~ 108 (115)
T 3lui_A 93 PLLGSSETFNSFLRRA 108 (115)
T ss_dssp HHHHHCHHHHHHHHHH
T ss_pred hhhhcChHHHHHHCcC
Confidence 5544 8899999754
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=155.83 Aligned_cols=205 Identities=12% Similarity=0.093 Sum_probs=144.3
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
+++||||||+|+||.++++.|++. +. +|+++.|........+.+.+.+ .....++.++.+|++
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~--Ga~~vvl~~R~~~~~~~~~~l~~~l--------------~~~g~~v~~~~~Dvt 302 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQ--GAAHLVLTSRRGADAPGAAELRAEL--------------EQLGVRVTIAACDAA 302 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHT--TCSEEEEEESSGGGSTTHHHHHHHH--------------HHTTCEEEEEECCTT
T ss_pred CCEEEEECCCCchHHHHHHHHHHC--CCcEEEEEeCCCCChHHHHHHHHHH--------------HhcCCeEEEEEccCC
Confidence 489999999999999999999998 67 8888898754333223332211 122468999999999
Q ss_pred CCCCCCCHHHHHhhcC------CccEEEEccccc-Cc-------cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 140 VPDLGISAEDRQMLSE------TIHIVYHIAATV-RF-------DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~------~vDiViH~AA~v-~f-------~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
+++ ++..+++ .+|+|||+|+.. .. .+.++..+++|+.|+.++.+++... .+.+||++||
T Consensus 303 d~~------~v~~~~~~i~~~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~-~~~~iV~~SS 375 (496)
T 3mje_A 303 DRE------ALAALLAELPEDAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADL-DLDAFVLFSS 375 (496)
T ss_dssp CHH------HHHHHHHTCCTTSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTS-CCSEEEEEEE
T ss_pred CHH------HHHHHHHHHHHhCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhcc-CCCEEEEEeC
Confidence 876 5666554 489999999986 21 1346678999999999999999876 6789999999
Q ss_pred CcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeee
Q psy7542 206 AYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSII 285 (762)
Q Consensus 206 ay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V 285 (762)
..+..... ....|+.+|+..+.+.++....|++++.+.||.+
T Consensus 376 ~a~~~g~~--------------------------------------g~~~YaAaKa~ldala~~~~~~Gi~v~sV~pG~w 417 (496)
T 3mje_A 376 GAAVWGSG--------------------------------------GQPGYAAANAYLDALAEHRRSLGLTASSVAWGTW 417 (496)
T ss_dssp HHHHTTCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHTTCCCEEEEECEE
T ss_pred hHhcCCCC--------------------------------------CcHHHHHHHHHHHHHHHHHHhcCCeEEEEECCcc
Confidence 85432110 0157999999999999887767999999999987
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 286 IPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 286 ~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
.++... .+ ......+.... ...++.++++.++..++.....
T Consensus 418 ~~~gm~------~~----~~~~~~l~~~g-----------~~~l~pe~~~~~l~~~l~~~~~ 458 (496)
T 3mje_A 418 GEVGMA------TD----PEVHDRLVRQG-----------VLAMEPEHALGALDQMLENDDT 458 (496)
T ss_dssp SSSCC----------------CHHHHHTT-----------EEEECHHHHHHHHHHHHHHTCS
T ss_pred cCCccc------cC----hHHHHHHHhcC-----------CCCCCHHHHHHHHHHHHcCCCc
Confidence 554211 00 00111111111 1235778899998888876543
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-13 Score=139.10 Aligned_cols=221 Identities=9% Similarity=-0.018 Sum_probs=135.5
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEE-e--CCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYIL-L--RPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~L-v--R~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
||+||||||+|+||++++++|++. +.+|+++ . |.. ++++++.+ .. ....+. |
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~--G~~V~~~~~~~r~~------~~~~~~~~--------------~~-~~~~~~--~ 55 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQD--GYTVVCHDASFADA------AERQRFES--------------EN-PGTIAL--A 55 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHT--TCEEEECCGGGGSH------HHHHHHHH--------------HS-TTEEEC--C
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEecCCcCCH------HHHHHHHH--------------Hh-CCCccc--C
Confidence 578999999999999999999998 6788888 5 753 23332211 00 111111 2
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEcccccCc----------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEEe
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAATVRF----------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVS 204 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f----------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vS 204 (762)
..+-. --.+...+....+|+|||+||.... .+.++..+++|+.|+.++++++... .+..++|++|
T Consensus 56 ~~~v~--~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~is 133 (244)
T 1zmo_A 56 EQKPE--RLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFIT 133 (244)
T ss_dssp CCCGG--GHHHHHGGGSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHH--HHHHHHHHHcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEC
Confidence 22111 0001122223468999999997543 1346778999999999999988631 2457999999
Q ss_pred CCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEEE
Q psy7542 205 TAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMIL 280 (762)
Q Consensus 205 Say~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~Iv 280 (762)
|..+..... . ...|+.||+..+.+.+..+.. |+.++++
T Consensus 134 S~~~~~~~~----------~----------------------------~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v 175 (244)
T 1zmo_A 134 SSVGKKPLA----------Y----------------------------NPLYGPARAATVALVESAAKTLSRDGILLYAI 175 (244)
T ss_dssp CGGGTSCCT----------T----------------------------CTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred ChhhCCCCC----------C----------------------------chHHHHHHHHHHHHHHHHHHHHhhcCcEEEEE
Confidence 986543210 0 157999999999998877652 8999999
Q ss_pred eeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 281 RPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 281 RPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
+||.|-.+.... | .....+ .......... .....+...+|+|++++.++..... ...++++.+.+
T Consensus 176 ~PG~v~T~~~~~---~-~~~~~~-~~~~~~~~~~--------~p~~r~~~pe~vA~~v~~l~s~~~~--~~tG~~i~vdg 240 (244)
T 1zmo_A 176 GPNFFNNPTYFP---T-SDWENN-PELRERVDRD--------VPLGRLGRPDEMGALITFLASRRAA--PIVGQFFAFTG 240 (244)
T ss_dssp EESSBCBTTTBC---H-HHHHHC-HHHHHHHHHH--------CTTCSCBCHHHHHHHHHHHHTTTTG--GGTTCEEEEST
T ss_pred eeCCCcCCcccc---c-ccccch-HHHHHHHhcC--------CCCCCCcCHHHHHHHHHHHcCcccc--CccCCEEEeCC
Confidence 999875542100 0 000000 0111111000 0112367899999999998875432 11467888876
Q ss_pred C
Q psy7542 361 N 361 (762)
Q Consensus 361 ~ 361 (762)
+
T Consensus 241 G 241 (244)
T 1zmo_A 241 G 241 (244)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=129.42 Aligned_cols=90 Identities=27% Similarity=0.486 Sum_probs=74.4
Q ss_pred ccccccceeeecC-CCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhh
Q psy7542 520 NCISVSGYRLIEC-EKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRN 598 (762)
Q Consensus 520 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (762)
..|+|+++..... .++|++|.|+|......|.|.||||||..||+ ++++.
T Consensus 6 i~VsIp~~~~~~~~~~~~~~Y~I~v~~~~~~~~V~RRYsdF~~L~~-----------------------------~L~~~ 56 (134)
T 2v14_A 6 IKISIPRYVLCGQGKDAHFEFEVKITVLDETWTVFRRYSRFREMHK-----------------------------TLKLK 56 (134)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEETTEEEEEEECHHHHHHHHH-----------------------------HHHHH
T ss_pred EEEEECcEEEEecCCCCEEEEEEEEEECCeEEEEEeeHHHHHHHHH-----------------------------HHHHH
Confidence 4455556665543 47999999999999999999999999999998 66666
Q ss_pred chhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-CCCChhHHHHHHHHHHHHHHHHHhcC
Q psy7542 599 CKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-RSNQPKVLDERRHLLEIYLKEMFKFG 677 (762)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (762)
+.. ...|.||+|++ .+.+++++|+||.+||.||+.+++..
T Consensus 57 ~p~---------------------------------------~~~p~lP~K~~~~~~~~~~ie~Rr~~Le~yL~~ll~~~ 97 (134)
T 2v14_A 57 YAE---------------------------------------LAALEFPPKKLFGNKDERVIAERRSHLEKYLRDFFSVM 97 (134)
T ss_dssp CGG---------------------------------------GGGCCCCCCCSSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC---------------------------------------CCCCCCcCCccccCCCHHHHHHHHHHHHHHHHHHHhCh
Confidence 532 15789999996 56789999999999999999999764
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.5e-13 Score=139.28 Aligned_cols=225 Identities=15% Similarity=0.114 Sum_probs=152.2
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
+-++||++|||||++.||+.+++.|++. |.+|++..|.. +++++..+ +...++..+.+
T Consensus 25 ~rL~gKvalVTGas~GIG~aiA~~la~~--Ga~V~i~~r~~------~~l~~~~~--------------~~g~~~~~~~~ 82 (273)
T 4fgs_A 25 QRLNAKIAVITGATSGIGLAAAKRFVAE--GARVFITGRRK------DVLDAAIA--------------EIGGGAVGIQA 82 (273)
T ss_dssp CTTTTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH--------------HHCTTCEEEEC
T ss_pred chhCCCEEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH--------------HcCCCeEEEEe
Confidence 3478999999999999999999999999 78899999863 34443321 12357889999
Q ss_pred ecCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEE
Q psy7542 137 DVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFV 201 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV 201 (762)
|+++++ ++++++ ..+|++||+||.... .+.++..+++|+.|+..+.+++... ++-.++|
T Consensus 83 Dv~~~~------~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~II 156 (273)
T 4fgs_A 83 DSANLA------ELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVV 156 (273)
T ss_dssp CTTCHH------HHHHHHHHHHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEE
T ss_pred cCCCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEE
Confidence 999876 555544 358999999997542 2567889999999999999988642 2335899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
.+||..+..... . ...|+.||+....+.+..+.. |+++
T Consensus 157 nisS~~~~~~~~----------~----------------------------~~~Y~asKaav~~ltr~lA~Ela~~gIrV 198 (273)
T 4fgs_A 157 LTGSTAGSTGTP----------A----------------------------FSVYAASKAALRSFARNWILDLKDRGIRI 198 (273)
T ss_dssp EECCGGGGSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHTTTSCEEE
T ss_pred EEeehhhccCCC----------C----------------------------chHHHHHHHHHHHHHHHHHHHhcccCeEE
Confidence 999986543211 0 147999999998888877663 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCC-CchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNIN-GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~-gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
..|-||.|-.+.-.... .... ....+...+.... ..--+...+|+|++++.++.+...- -.++++
T Consensus 199 N~V~PG~i~T~~~~~~~---~~~~~~~~~~~~~~~~~~---------PlgR~g~peeiA~~v~FLaSd~a~~--iTG~~i 264 (273)
T 4fgs_A 199 NTLSPGPTETTGLVELA---GKDPVQQQGLLNALAAQV---------PMGRVGRAEEVAAAALFLASDDSSF--VTGAEL 264 (273)
T ss_dssp EEEEECSBCC------------CHHHHHHHHHHHHHHS---------TTSSCBCHHHHHHHHHHHHSGGGTT--CCSCEE
T ss_pred EEEeeCCCCChhHHHhh---ccCchhhHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCchhcC--ccCCeE
Confidence 99999987554211100 0000 0011122211111 0112456789999999988655431 257888
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+.+|
T Consensus 265 ~VDGG 269 (273)
T 4fgs_A 265 FVDGG 269 (273)
T ss_dssp EESTT
T ss_pred eECcC
Confidence 88776
|
| >3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.5e-13 Score=129.03 Aligned_cols=106 Identities=18% Similarity=0.274 Sum_probs=84.0
Q ss_pred CCccccccceeeecC-CCCeEEEEEEEEEc-----CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhh
Q psy7542 518 KENCISVSGYRLIEC-EKPYYVYVIHVRMF-----QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQN 591 (762)
Q Consensus 518 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (762)
....|.|+..+.... .++|++|.|+|... +..|.|.||||||..||+
T Consensus 7 ~~l~i~V~dp~~~~~g~~~yv~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~--------------------------- 59 (138)
T 3iq2_A 7 KDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKG--------------------------- 59 (138)
T ss_dssp CCCEEEEEEEEEEECSSCEEEEEEEEEESCSSSSSCCEEEEEEEHHHHHHHHH---------------------------
T ss_pred ceEEEEECCCEEecCCCCCEEEEEEEEEECCCCcCCCeEEEEcChHHHHHHHH---------------------------
Confidence 345566776665543 58899999999864 478999999999999998
Q ss_pred HHHHhhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCC-----CChhHHHHHHHHH
Q psy7542 592 RRQKKRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRS-----NQPKVLDERRHLL 666 (762)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 666 (762)
++++.+.. ...|.+|+|++.. .+++++|+||.+|
T Consensus 60 --~L~~~~p~---------------------------------------~~iP~lP~K~~~~~~~~~~~~~fie~Rr~~L 98 (138)
T 3iq2_A 60 --KLEEAHPT---------------------------------------LIIPPLPEKFIVKGMVERFNDDFIETRRKAL 98 (138)
T ss_dssp --HHHHHCTT---------------------------------------SCCCCCCCCC----CCGGGCHHHHHHHHHHH
T ss_pred --HHHHHCcC---------------------------------------cccCCCCcchhhccccccCCHHHHHHHHHHH
Confidence 66665522 2689999999743 3899999999999
Q ss_pred HHHHHHHHhcCCCh--HHHHhhhCCCC
Q psy7542 667 EIYLKEMFKFGPSR--NQVLAFLGVNS 691 (762)
Q Consensus 667 ~~~~~~~~~~~~~~--~~~~~~~~~~~ 691 (762)
|.||+.++..+..+ ..+..||..++
T Consensus 99 e~fL~~l~~~p~l~~s~~~~~FL~~~~ 125 (138)
T 3iq2_A 99 HKFLNRIADHPTLTFNEDFKIFLTAQA 125 (138)
T ss_dssp HHHHHHHHHSTTGGGCHHHHHHHHTTC
T ss_pred HHHHHHHHcCHhhhcChHHHhhhCCCC
Confidence 99999999877666 79999999874
|
| >2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-13 Score=130.72 Aligned_cols=102 Identities=19% Similarity=0.321 Sum_probs=81.9
Q ss_pred cccccceeeec-CCCCeEEEEEEEEEc-----CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHH
Q psy7542 521 CISVSGYRLIE-CEKPYYVYVIHVRMF-----QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQ 594 (762)
Q Consensus 521 ~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (762)
.|.|+...... ..++|++|.|+|... ...|.|.||||||..||+ +
T Consensus 12 ~i~V~dp~~~~~g~~~yv~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~-----------------------------~ 62 (146)
T 2csk_A 12 EIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKN-----------------------------E 62 (146)
T ss_dssp EEEEEEEEEESSSSSCEEEEEEEEECCCSSSSCSEEEEEECHHHHHHHHH-----------------------------H
T ss_pred EEEEcCceEecCCCCCEEEEEEEEEECCCCcCcCceEEEecHHHHHHHHH-----------------------------H
Confidence 34555555443 358999999999865 578999999999999998 5
Q ss_pred HhhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC----------CCChhHHHHHHH
Q psy7542 595 KKRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR----------SNQPKVLDERRH 664 (762)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 664 (762)
+++..+. ..|.||+|++. +++++++|+||+
T Consensus 63 L~~~~~~----------------------------------------~iP~lP~K~~~~~~~~~~~~g~~~~~fie~Rr~ 102 (146)
T 2csk_A 63 LERDSKI----------------------------------------VVPPLPGKALKRQLPFRGDEGIFEESFIEERRQ 102 (146)
T ss_dssp HSSSSSC----------------------------------------CCCCCSCCCCCCSSTTCCCSSCCCHHHHHHHHH
T ss_pred HHhccCC----------------------------------------cCCCCCCCchhhccccccccCCCCHHHHHHHHH
Confidence 5543322 68999999974 579999999999
Q ss_pred HHHHHHHHHHhcCCCh--HHHHhhhCCCC
Q psy7542 665 LLEIYLKEMFKFGPSR--NQVLAFLGVNS 691 (762)
Q Consensus 665 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 691 (762)
.||.||+.++.....+ ..+..||..+.
T Consensus 103 ~Le~fL~~l~~~p~l~~s~~l~~FL~~~~ 131 (146)
T 2csk_A 103 GLEQFINKIAGHPLAQNERCLHMFLQEEA 131 (146)
T ss_dssp HHHHHHHHHHHCHHHHHCHHHHHHTTCSS
T ss_pred HHHHHHHHHHcChhhccCcHHHhhcCCCc
Confidence 9999999999876555 78999999874
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-12 Score=133.86 Aligned_cols=220 Identities=12% Similarity=0.062 Sum_probs=150.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+++||||++.||+.+++.|.+. |.+|++..|... ++..+++ .....++..+.+|+
T Consensus 7 L~GKvalVTGas~GIG~aiA~~la~~--Ga~Vvi~~r~~~----~~~~~~~---------------~~~g~~~~~~~~Dv 65 (247)
T 4hp8_A 7 LEGRKALVTGANTGLGQAIAVGLAAA--GAEVVCAARRAP----DETLDII---------------AKDGGNASALLIDF 65 (247)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCC----HHHHHHH---------------HHTTCCEEEEECCT
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHc--CCEEEEEeCCcH----HHHHHHH---------------HHhCCcEEEEEccC
Confidence 58999999999999999999999999 788899998643 1222221 11236789999999
Q ss_pred CCCCCCCCHHHHHhhcC--CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH-c---CCccEEEEEeC
Q psy7542 139 AVPDLGISAEDRQMLSE--TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ-M---IHLQLFVYVST 205 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~--~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~-~---~~lk~fV~vSS 205 (762)
+++. +.+.+++ .+|++||+||.... .+.|+..+++|+.|+..+.+++.. + ++-.++|.+||
T Consensus 66 ~d~~------~v~~~~~~g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS 139 (247)
T 4hp8_A 66 ADPL------AAKDSFTDAGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIAS 139 (247)
T ss_dssp TSTT------TTTTSSTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred CCHH------HHHHHHHhCCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 9986 3444443 58999999997542 256788999999999999887643 3 23468999999
Q ss_pred CcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEe
Q psy7542 206 AYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILR 281 (762)
Q Consensus 206 ay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvR 281 (762)
..+..... . ...|+.||+....+.+..+. .|+++..|-
T Consensus 140 ~~~~~g~~----------~----------------------------~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~ 181 (247)
T 4hp8_A 140 LLSFQGGI----------R----------------------------VPSYTAAKHGVAGLTKLLANEWAAKGINVNAIA 181 (247)
T ss_dssp GGGTSCCS----------S----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEE
T ss_pred hhhCCCCC----------C----------------------------ChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEe
Confidence 86643211 0 14799999988887776655 389999999
Q ss_pred eeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 282 PSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 282 Ps~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
||.|-.+..+ ...........+.... ..--+-..+|+|++++.++.....- ..++++.+.+|
T Consensus 182 PG~i~T~~~~-------~~~~~~~~~~~~~~~~---------PlgR~g~peeiA~~v~fLaSd~a~~--iTG~~i~VDGG 243 (247)
T 4hp8_A 182 PGYIETNNTE-------ALRADAARNKAILERI---------PAGRWGHSEDIAGAAVFLSSAAADY--VHGAILNVDGG 243 (247)
T ss_dssp ECSBCSGGGH-------HHHTSHHHHHHHHTTC---------TTSSCBCTHHHHHHHHHHTSGGGTT--CCSCEEEESTT
T ss_pred eCCCCCcchh-------hcccCHHHHHHHHhCC---------CCCCCcCHHHHHHHHHHHhCchhcC--CcCCeEEECcc
Confidence 9987543211 0000111111111111 1112445689999999888655431 25788888766
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-13 Score=140.11 Aligned_cols=222 Identities=10% Similarity=-0.003 Sum_probs=149.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+++||||++.||+.+++.|++. |.+|++..|.. +++++..+ .++ ....++..+.+|+
T Consensus 7 L~gKvalVTGas~GIG~aia~~la~~--Ga~Vvi~~~~~------~~~~~~~~-----~l~------~~g~~~~~~~~Dv 67 (255)
T 4g81_D 7 LTGKTALVTGSARGLGFAYAEGLAAA--GARVILNDIRA------TLLAESVD-----TLT------RKGYDAHGVAFDV 67 (255)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEECCSCH------HHHHHHHH-----HHH------HTTCCEEECCCCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HHH------hcCCcEEEEEeeC
Confidence 58999999999999999999999999 78889888853 23333211 111 1235788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH-c---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ-M---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~-~---~~lk~f 200 (762)
++++ ++++++ ..+|++||+||.... .+.++..+++|+.|+..+.+.+.. + .+-.++
T Consensus 68 ~~~~------~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~I 141 (255)
T 4g81_D 68 TDEL------AIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKI 141 (255)
T ss_dssp TCHH------HHHHHHHHHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCHH------HHHHHHHHHHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEE
Confidence 9876 555443 358999999997542 256778999999999999887643 2 234689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... . ...|+.||+..+.+.+..+. .|++
T Consensus 142 VnisS~~~~~~~~----------~----------------------------~~~Y~asKaal~~ltr~lA~ela~~gIr 183 (255)
T 4g81_D 142 INIGSLTSQAARP----------T----------------------------VAPYTAAKGGIKMLTCSMAAEWAQFNIQ 183 (255)
T ss_dssp EEECCGGGTSBCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEEeehhhcCCCC----------C----------------------------chhHHHHHHHHHHHHHHHHHHhcccCeE
Confidence 9999987643221 0 14799999988877776655 3899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+..|-||.|-.+... .......+...+....+ ..-+...+|+|++++.++...... -.++++
T Consensus 184 VN~V~PG~i~T~~~~-------~~~~~~~~~~~~~~~~P---------l~R~g~pediA~~v~fL~S~~a~~--iTG~~i 245 (255)
T 4g81_D 184 TNAIGPGYILTDMNT-------ALIEDKQFDSWVKSSTP---------SQRWGRPEELIGTAIFLSSKASDY--INGQII 245 (255)
T ss_dssp EEEEEECSBCCGGGH-------HHHTCHHHHHHHHHHST---------TCSCBCGGGGHHHHHHHHSGGGTT--CCSCEE
T ss_pred EEEEeeCCCCCchhh-------cccCCHHHHHHHHhCCC---------CCCCcCHHHHHHHHHHHhCchhCC--CcCCEE
Confidence 999999987544211 00011111111111110 112445678999998887654431 257888
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+.+|
T Consensus 246 ~VDGG 250 (255)
T 4g81_D 246 YVDGG 250 (255)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 88776
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.2e-13 Score=152.28 Aligned_cols=225 Identities=10% Similarity=0.032 Sum_probs=151.5
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEE-eCCCCC-----------cchHHHHHHHhcChhHHHHHhhhh
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYIL-LRPKKN-----------KNSRERLEEIFQSPLYEALKKEQS 123 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~L-vR~~~~-----------~~~~eRl~~ll~~~~f~~l~~~~~ 123 (762)
.+-.++++|||||+|.||.++++.|++. +. +|+++ .|+... ...++.++++
T Consensus 247 ~~~~~~~vLITGgsgGIG~~lA~~La~~--G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l-------------- 310 (525)
T 3qp9_A 247 WWQADGTVLVTGAEEPAAAEAARRLARD--GAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAEL-------------- 310 (525)
T ss_dssp SSCTTSEEEESSTTSHHHHHHHHHHHHH--TCCEEEEEECCCC---------------CHHHHHHH--------------
T ss_pred eecCCCEEEEECCCCcHHHHHHHHHHHc--CCCEEEEEeCCCCCCccccccccccCHHHHHHHHHH--------------
Confidence 4557899999999999999999999998 56 46666 776432 1111111111
Q ss_pred cccccCCeEEEEeecCCCCCCCCHHHHHhhcC------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHH
Q psy7542 124 ESAIFEKVIPINGDVAVPDLGISAEDRQMLSE------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNL 190 (762)
Q Consensus 124 ~~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLel 190 (762)
.....++.++.+|+++++ ++..+++ .+|+|||+||.... .+.++..+++|+.|+.++.++
T Consensus 311 -~~~g~~v~~~~~Dvtd~~------~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~ 383 (525)
T 3qp9_A 311 -ADLGATATVVTCDLTDAE------AAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRL 383 (525)
T ss_dssp -HHHTCEEEEEECCTTSHH------HHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HhcCCEEEEEECCCCCHH------HHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 112367999999999876 6666654 37999999997642 234677899999999999999
Q ss_pred HHHcCC----ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHH
Q psy7542 191 SKQMIH----LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGV 266 (762)
Q Consensus 191 A~~~~~----lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~l 266 (762)
+..... ..+||++||..+..... ....|+.+|+..+.+
T Consensus 384 ~~~~~~~~~~~~~iV~~SS~a~~~g~~--------------------------------------g~~~YaaaKa~l~~l 425 (525)
T 3qp9_A 384 LREAAAAGGRPPVLVLFSSVAAIWGGA--------------------------------------GQGAYAAGTAFLDAL 425 (525)
T ss_dssp HHHTC----CCCEEEEEEEGGGTTCCT--------------------------------------TCHHHHHHHHHHHHH
T ss_pred hccccccCCCCCEEEEECCHHHcCCCC--------------------------------------CCHHHHHHHHHHHHH
Confidence 987521 68999999986543211 015799999999998
Q ss_pred HHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 267 VTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 267 v~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
..+....|++++.+.||.+ .+ |... .......+.. .....++.+++++++..++....
T Consensus 426 A~~~~~~gi~v~sI~pG~~-~t------gm~~----~~~~~~~~~~-----------~g~~~l~pee~a~~l~~~l~~~~ 483 (525)
T 3qp9_A 426 AGQHRADGPTVTSVAWSPW-EG------SRVT----EGATGERLRR-----------LGLRPLAPATALTALDTALGHGD 483 (525)
T ss_dssp HTSCCSSCCEEEEEEECCB-TT------SGGG----SSHHHHHHHH-----------TTBCCBCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhCCCCEEEEECCcc-cc------cccc----chhhHHHHHh-----------cCCCCCCHHHHHHHHHHHHhCCC
Confidence 7666555999999999977 22 1100 0111111111 01235789999999999987654
Q ss_pred CCCCCCceEEEecCCCCCcccHHHHHHHHH
Q psy7542 347 SNPGNTMRVINLTANKDFQITWYDIIENGK 376 (762)
Q Consensus 347 ~~~~~~~~iyNi~s~~~~piT~~el~~~i~ 376 (762)
. .+ +. ..+.|..+...+.
T Consensus 484 ~------~v--~v----~~~dw~~~~~~~~ 501 (525)
T 3qp9_A 484 T------AV--TI----ADVDWSSFAPGFT 501 (525)
T ss_dssp S------EE--EE----CCBCHHHHHHHHH
T ss_pred C------eE--EE----EeCCHHHHHhhcc
Confidence 3 22 22 2367877766544
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-12 Score=133.36 Aligned_cols=223 Identities=13% Similarity=0.026 Sum_probs=150.5
Q ss_pred cCCCEEEEECCCC--hhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGASG--FVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGATG--FLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
++||+++||||+| .||..+++.|.+. |.+|++..|.... .+.+.+.++ .....++.++.+
T Consensus 4 l~gK~alVTGaa~~~GIG~aiA~~la~~--Ga~Vvi~~r~~~~---~~~~~~~~~-------------~~~~~~~~~~~~ 65 (256)
T 4fs3_A 4 LENKTYVIMGIANKRSIAFGVAKVLDQL--GAKLVFTYRKERS---RKELEKLLE-------------QLNQPEAHLYQI 65 (256)
T ss_dssp CTTCEEEEECCCSTTCHHHHHHHHHHHT--TCEEEEEESSGGG---HHHHHHHHG-------------GGTCSSCEEEEC
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHC--CCEEEEEECCHHH---HHHHHHHHH-------------hcCCCcEEEEEc
Confidence 5899999999987 8999999999998 7889999996432 333433322 112357889999
Q ss_pred ecCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------c----ccHHHHHHHhHHHHHHHHHHHHHc-CCc
Q psy7542 137 DVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------D----DYMQTYVFLNTRGTRDMLNLSKQM-IHL 197 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~----~~l~~~~~~NV~GT~~LLelA~~~-~~l 197 (762)
|+++++ ++++++ ..+|++||+|+.... . +.+...+++|+.++..+.+.+... ++-
T Consensus 66 Dv~~~~------~v~~~~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~ 139 (256)
T 4fs3_A 66 DVQSDE------EVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEG 139 (256)
T ss_dssp CTTCHH------HHHHHHHHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTC
T ss_pred cCCCHH------HHHHHHHHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999875 454443 468999999996532 1 234557789999999888887653 233
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----c
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----A 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~ 273 (762)
.++|++||..+..... . ...|+.||+..+.+.+..+. .
T Consensus 140 G~IVnisS~~~~~~~~----------~----------------------------~~~Y~asKaal~~ltr~lA~Ela~~ 181 (256)
T 4fs3_A 140 GSIVATTYLGGEFAVQ----------N----------------------------YNVMGVAKASLEANVKYLALDLGPD 181 (256)
T ss_dssp EEEEEEECGGGTSCCT----------T----------------------------THHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CEEEEEeccccccCcc----------c----------------------------chhhHHHHHHHHHHHHHHHHHhCcc
Confidence 6899999986643211 0 15799999988887776655 3
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+++..|.||.|-.+..+ ................+ ..-+...+|+|++++.++...... -.+
T Consensus 182 gIrVN~V~PG~i~T~~~~-------~~~~~~~~~~~~~~~~P---------l~R~g~peevA~~v~fL~Sd~a~~--iTG 243 (256)
T 4fs3_A 182 NIRVNAISAGPIRTLSAK-------GVGGFNTILKEIKERAP---------LKRNVDQVEVGKTAAYLLSDLSSG--VTG 243 (256)
T ss_dssp TEEEEEEEECCCCSGGGT-------TCTTHHHHHHHHHHHST---------TSSCCCHHHHHHHHHHHHSGGGTT--CCS
T ss_pred CeEEEEEecCCCCChhhh-------hccCCHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCchhcC--ccC
Confidence 899999999987554322 11222222222222110 112456789999999888654331 247
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++.+.+|
T Consensus 244 ~~i~VDGG 251 (256)
T 4fs3_A 244 ENIHVDSG 251 (256)
T ss_dssp CEEEESTT
T ss_pred CEEEECcC
Confidence 88888776
|
| >2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-13 Score=124.90 Aligned_cols=102 Identities=20% Similarity=0.295 Sum_probs=83.1
Q ss_pred cccccceeeecCCCCeEEEEEEEEEcCe--EEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhh
Q psy7542 521 CISVSGYRLIECEKPYYVYVIHVRMFQQ--HYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRN 598 (762)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (762)
.|+|.+++....+..||+|.|+|...+. .|.|.||||||..||+ ++++.
T Consensus 7 ~v~V~~~ek~~~~~k~y~Y~I~v~~~~~~~~~~V~RRYseF~~Lh~-----------------------------~L~~~ 57 (121)
T 2ar5_A 7 EVSVFTYHKKYNPDKHYIYVVRILREGQIEPSFVFRTFDEFQELHN-----------------------------KLSII 57 (121)
T ss_dssp EEEEEEEECCCSSSSCCEEEEEEEETTCSSCEEEEEEHHHHHHHHH-----------------------------HHHHH
T ss_pred EEEECcEEEEecCCCcEEEEEEEEECCCceeEEEEEEHHHHHHHHH-----------------------------HHHHH
Confidence 5678888766556677789999999875 8999999999999999 66665
Q ss_pred chhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC--CCChhHHHHHHHHHHHHHHHHHhc
Q psy7542 599 CKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR--SNQPKVLDERRHLLEIYLKEMFKF 676 (762)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 676 (762)
+.. ...|.||+|++. ++.++++|+||..||.||+.+++.
T Consensus 58 fp~---------------------------------------~~lP~lP~K~~~g~~~~~~~~e~Rr~~Le~yL~~ll~~ 98 (121)
T 2ar5_A 58 FPL---------------------------------------WKLPGFPNRMVLGRTHIKDVAAKRKIELNSYLQSLMNA 98 (121)
T ss_dssp SCG---------------------------------------GGSCCCCCCCCSSSSSTTHHHHHHHHHHHHHHHHHHTS
T ss_pred CCC---------------------------------------CCCCCCCCCeecCccCcHHHHHHHHHHHHHHHHHHHhC
Confidence 522 267999999973 346789999999999999999987
Q ss_pred CCCh---HHHHhhhCCC
Q psy7542 677 GPSR---NQVLAFLGVN 690 (762)
Q Consensus 677 ~~~~---~~~~~~~~~~ 690 (762)
.+.. ..++.||.-.
T Consensus 99 p~~i~~s~~v~~Ff~~~ 115 (121)
T 2ar5_A 99 STDVAECDLVCTFFHGS 115 (121)
T ss_dssp CHHHHTSHHHHHHTSSS
T ss_pred CchhcCCHHHHHHcCCc
Confidence 6554 8899998755
|
| >1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=9.6e-13 Score=128.31 Aligned_cols=108 Identities=19% Similarity=0.258 Sum_probs=82.2
Q ss_pred ccccccceeee-----cCCCCeEEEEEEEEE-----cCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhh
Q psy7542 520 NCISVSGYRLI-----ECEKPYYVYVIHVRM-----FQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLK 589 (762)
Q Consensus 520 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (762)
..|.|+..+.. +..++|++|.|+|+. .+..|.|.||||||..||+
T Consensus 36 l~i~V~dp~~~~~~g~~~~~~yv~Y~I~v~~~~~~f~~~~~~V~RRYsdF~~Lh~------------------------- 90 (162)
T 1ocs_A 36 LEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRK------------------------- 90 (162)
T ss_dssp EEEEEEEEEEECCCSTTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHH-------------------------
T ss_pred EEEEEeCCEEeeccCCCCCCCeEEEEEEEEECCCCCCcceeEEEeeHHHHHHHHH-------------------------
Confidence 44556555554 456899999999987 4678999999999999998
Q ss_pred hhHHHHhhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC--CCChhHHHHHHHHHH
Q psy7542 590 QNRRQKKRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR--SNQPKVLDERRHLLE 667 (762)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 667 (762)
++++.++- + +.+....|.||+|++. +.+++++|+||.+||
T Consensus 91 ----~L~~~~~~--------~--------------------------~~p~~~iP~lP~K~~~~~~~~~~fie~Rr~~Le 132 (162)
T 1ocs_A 91 ----CLIKEISM--------L--------------------------NHPKVMVPHLPGKILLSNRFSNEVIEERRQGLN 132 (162)
T ss_dssp ----HHHHHHHH--------T--------------------------TCTTCCCCCCTTCCCSSCTTSHHHHHHHHHHHH
T ss_pred ----HHHHHhcc--------c--------------------------cCCCccCCCCCCCcccccCCCHHHHHHHHHHHH
Confidence 55554410 0 0012378999999973 469999999999999
Q ss_pred HHHHHHHhcCCChH---HHHhhhCCC
Q psy7542 668 IYLKEMFKFGPSRN---QVLAFLGVN 690 (762)
Q Consensus 668 ~~~~~~~~~~~~~~---~~~~~~~~~ 690 (762)
.||+.++.....++ .+..||..+
T Consensus 133 ~fL~~l~~~p~l~~~s~~l~~FL~~~ 158 (162)
T 1ocs_A 133 TWMQSVAGHPLLQSGSKVLVRFIEAE 158 (162)
T ss_dssp HHHHHHHTCHHHHHHCHHHHHHHHCS
T ss_pred HHHHHHHcCHHhhhCCHHHHHhCCCc
Confidence 99999997655543 689999765
|
| >1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A | Back alignment and structure |
|---|
Probab=99.40 E-value=8.2e-13 Score=125.88 Aligned_cols=113 Identities=20% Similarity=0.361 Sum_probs=84.7
Q ss_pred cccccceeeecCCCCeEEEEEEEEEc-CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhc
Q psy7542 521 CISVSGYRLIECEKPYYVYVIHVRMF-QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNC 599 (762)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (762)
.|.|.+++....+..||+|.|+|... +..|.|.||||||..||. ++++.+
T Consensus 8 ~v~V~~~ek~~~~~~~~~Y~I~V~~~~~~~~~V~RRYsdF~~Lh~-----------------------------~L~~~f 58 (141)
T 1kq6_A 8 HIALLGFEKRFVPSQHYVYMFLVKWQDLSEKVVYRRFTEIYEFHK-----------------------------TLKEMF 58 (141)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEEETTCCEEEEEECHHHHHHHHH-----------------------------HHHHHC
T ss_pred EEEEccEEEecCCCCeEEEEEEEEEcCCCEEEEEecHHHHHHHHH-----------------------------HHHHHC
Confidence 57788887665567799999999974 568999999999999999 555544
Q ss_pred hhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHHhcCCC
Q psy7542 600 KYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGPS 679 (762)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (762)
.. .+|.+ .+..-..|.||+|++..+ ++++++||..||.||+.+++..+.
T Consensus 59 p~--------------~~g~~----------------~~~~~~lP~lP~K~~~~~-~~~~e~Rr~~Le~YL~~Ll~~p~~ 107 (141)
T 1kq6_A 59 PI--------------EAGAI----------------NPENRIIPHLPAPKWFDG-QRAAENRQGTLTEYCSTLMSLPTK 107 (141)
T ss_dssp TT--------------TTTSS----------------CGGGCCSCCCCCCCCCCS-HHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred ch--------------hhccc----------------CccccccCCCCCccccCC-HHHHHHHHHHHHHHHHHHHhCCHh
Confidence 21 00000 001125689999997665 899999999999999999987652
Q ss_pred -h--HHHHhhhCCCCCC
Q psy7542 680 -R--NQVLAFLGVNSKN 693 (762)
Q Consensus 680 -~--~~~~~~~~~~~~~ 693 (762)
+ ..|++||...+..
T Consensus 108 i~~s~~v~~Fl~~~~~d 124 (141)
T 1kq6_A 108 ISRCPHLLDFFKVRPDD 124 (141)
T ss_dssp HHTCHHHHHHHSCCHHH
T ss_pred hcCChHHHHHhCCCccc
Confidence 2 8999999887543
|
| >2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.3e-13 Score=127.04 Aligned_cols=104 Identities=19% Similarity=0.283 Sum_probs=79.3
Q ss_pred cccccceeeecCCCCeEEEEEEEEEcCe--EEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhh
Q psy7542 521 CISVSGYRLIECEKPYYVYVIHVRMFQQ--HYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRN 598 (762)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (762)
.|.|.+++....+..||+|.|.|...+. .|.|.||||||..||+ ++++.
T Consensus 22 ~v~I~~~ek~~~~~k~~~Y~I~V~~~~~~~~~~V~RRYseF~~Lh~-----------------------------~L~~~ 72 (140)
T 2iwl_X 22 EVSVFTYHKKYNPDKHYIYVVRILREGQIEPSFVFRTFDEFQELHN-----------------------------KLSII 72 (140)
T ss_dssp EEEEEEEEECCSSSSCEEEEEEEEETTCSSCEEEEECHHHHHHHHH-----------------------------HHHHH
T ss_pred EEEECcEEEEecCCCeEEEEEEEEECCCceeEEEEeEHHHHHHHHH-----------------------------HHHHH
Confidence 5678888766556678899999999875 8999999999999999 66666
Q ss_pred chhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC--CCChhHHHHHHHHHHHHHHHHHhc
Q psy7542 599 CKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR--SNQPKVLDERRHLLEIYLKEMFKF 676 (762)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 676 (762)
+.. ...|.||+|++. ++..+++++||..||.||+.+++.
T Consensus 73 fp~---------------------------------------~~lP~lP~K~~~~~~~~~~~~e~Rr~~Le~yL~~Ll~~ 113 (140)
T 2iwl_X 73 FPL---------------------------------------WKLPGFPNRMVLGRTHIKDVAAKRKIELNSYLQSLMNA 113 (140)
T ss_dssp SCG---------------------------------------GGSCCCCC----------CCCCHHHHHHHHHHHHHTTS
T ss_pred CcC---------------------------------------ccCCCCCCCeecCccchHHHHHHHHHHHHHHHHHHHhC
Confidence 532 267999999974 446789999999999999999986
Q ss_pred CCCh---HHHHhhhCCCCC
Q psy7542 677 GPSR---NQVLAFLGVNSK 692 (762)
Q Consensus 677 ~~~~---~~~~~~~~~~~~ 692 (762)
.+.. ..|++||.....
T Consensus 114 ~~~i~~s~~v~~Fl~~~~~ 132 (140)
T 2iwl_X 114 STDVAECDLVCTFFHPLLR 132 (140)
T ss_dssp CHHHHTSHHHHHHHSCCTT
T ss_pred CHhhhcCHHHHHHhCCCCC
Confidence 6544 789999987643
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=9.3e-12 Score=132.09 Aligned_cols=241 Identities=12% Similarity=0.016 Sum_probs=138.9
Q ss_pred cCCCEEEEECCC--ChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGAS--GFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGAT--GFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
++||+|+||||+ |+||++++++|++. +.+|+++.|.... .+..+-.+..-.+.+.... ..........+.+
T Consensus 6 l~~k~~lVTGas~~~GIG~aia~~la~~--G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (297)
T 1d7o_A 6 LRGKRAFIAGIADDNGYGWAVAKSLAAA--GAEILVGTWVPAL----NIFETSLRRGKFDQSRVLP-DGSLMEIKKVYPL 78 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHT--TCEEEEEEEHHHH----HHHHHHHHTTTTTGGGBCT-TSSBCCEEEEEEE
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHC--CCeEEEeeccccc----hhhhhhhhhhHhhhhhhhc-ccccccccccccc
Confidence 478999999999 99999999999998 6788888764200 0000000000000000000 0000001233444
Q ss_pred ecCCC---CCCC-----------CHHHHHhh-------cCCccEEEEcccccC-----c----cccHHHHHHHhHHHHHH
Q psy7542 137 DVAVP---DLGI-----------SAEDRQML-------SETIHIVYHIAATVR-----F----DDYMQTYVFLNTRGTRD 186 (762)
Q Consensus 137 Dl~~~---~LGL-----------s~~~l~~l-------~~~vDiViH~AA~v~-----f----~~~l~~~~~~NV~GT~~ 186 (762)
|+.-. ++.. +.++++.+ ...+|++||+||... + .+.++..+++|+.|+.+
T Consensus 79 ~~~~~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~ 158 (297)
T 1d7o_A 79 DAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVS 158 (297)
T ss_dssp CTTCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred ceeccchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHH
Confidence 43100 0000 00122222 236899999998531 1 13466789999999999
Q ss_pred HHHHHHHc-CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHH
Q psy7542 187 MLNLSKQM-IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEG 265 (762)
Q Consensus 187 LLelA~~~-~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~ 265 (762)
+++++... ..-.++|++||..+.... |. +...|+.||+..+.
T Consensus 159 l~~~~~~~m~~~g~iv~isS~~~~~~~----------~~---------------------------~~~~Y~asKaa~~~ 201 (297)
T 1d7o_A 159 LLSHFLPIMNPGGASISLTYIASERII----------PG---------------------------YGGGMSSAKAALES 201 (297)
T ss_dssp HHHHHGGGEEEEEEEEEEECGGGTSCC----------TT---------------------------CTTTHHHHHHHHHH
T ss_pred HHHHHHHHhccCceEEEEeccccccCC----------CC---------------------------cchHHHHHHHHHHH
Confidence 99999753 112589999998653211 00 01369999999888
Q ss_pred HHHHHHH-----cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHH
Q psy7542 266 VVTEYME-----AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLL 340 (762)
Q Consensus 266 lv~~~~~-----~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~ 340 (762)
+.+..+. .|+.+++++||.|.++.... ......+........ ....+..++|+|++++.
T Consensus 202 ~~~~la~e~~~~~gi~vn~v~PG~v~T~~~~~-------~~~~~~~~~~~~~~~---------p~~r~~~pedvA~~v~~ 265 (297)
T 1d7o_A 202 DTRVLAFEAGRKQNIRVNTISAGPLGSRAAKA-------IGFIDTMIEYSYNNA---------PIQKTLTADEVGNAAAF 265 (297)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECCCBCCCSSC-------CSHHHHHHHHHHHHS---------SSCCCBCHHHHHHHHHH
T ss_pred HHHHHHHHhCcccCcEEEEEeccccccchhhh-------ccccHHHHHHhhccC---------CCCCCCCHHHHHHHHHH
Confidence 8776542 38999999999998764321 000111111111111 11235689999999998
Q ss_pred HhhcccCCCCCCceEEEecCC
Q psy7542 341 STWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 341 a~~~~~~~~~~~~~iyNi~s~ 361 (762)
++..... ...++++++.++
T Consensus 266 l~s~~~~--~itG~~i~vdgG 284 (297)
T 1d7o_A 266 LVSPLAS--AITGATIYVDNG 284 (297)
T ss_dssp HTSGGGT--TCCSCEEEESTT
T ss_pred HhCcccc--CCCCCEEEECCC
Confidence 8865432 114789999877
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.6e-12 Score=131.71 Aligned_cols=220 Identities=13% Similarity=0.101 Sum_probs=143.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||++|||||++.||+++++.|++. |.+|++..|..... ..+...+.+|+
T Consensus 9 L~GK~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~---------------------------~~~~~~~~~Dv 59 (261)
T 4h15_A 9 LRGKRALITAGTKGAGAATVSLFLEL--GAQVLTTARARPEG---------------------------LPEELFVEADL 59 (261)
T ss_dssp CTTCEEEESCCSSHHHHHHHHHHHHT--TCEEEEEESSCCTT---------------------------SCTTTEEECCT
T ss_pred CCCCEEEEeccCcHHHHHHHHHHHHc--CCEEEEEECCchhC---------------------------CCcEEEEEcCC
Confidence 58999999999999999999999999 78899999965321 12334688999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccC-----c----cccHHHHHHHhHHHHHHHHHHHHHc---CCccE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVR-----F----DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQL 199 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~-----f----~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~ 199 (762)
++++ +.+.++ ..+|++||+|+... + .+.++..+++|+.|+..+.+.+... .+-.+
T Consensus 60 ~~~~------~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~ 133 (261)
T 4h15_A 60 TTKE------GCAIVAEATRQRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGV 133 (261)
T ss_dssp TSHH------HHHHHHHHHHHHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCce
Confidence 9876 444433 46899999998542 2 2457789999999999988877532 23468
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 275 (762)
+|++||..+.... |. ....|+.||+..+.+.+..+. .|+
T Consensus 134 Iv~isS~~~~~~~----------~~---------------------------~~~~Y~asKaal~~lt~~lA~Ela~~gI 176 (261)
T 4h15_A 134 VVHVTSIQRVLPL----------PE---------------------------STTAYAAAKAALSTYSKAMSKEVSPKGV 176 (261)
T ss_dssp EEEECCGGGTSCC----------TT---------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred EEEEEehhhccCC----------CC---------------------------ccHHHHHHHHHHHHHHHHHHHHhhhhCe
Confidence 9999998653221 10 014699999988888777665 389
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCc-----hHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCC
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGP-----TGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPG 350 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp-----~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~ 350 (762)
++..|-||.|-.+.............+. .......... -...-+...+|+|++++.++......
T Consensus 177 rVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~PlgR~g~peevA~~v~fLaS~~a~~-- 245 (261)
T 4h15_A 177 RVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGLGG---------IPLGRPAKPEEVANLIAFLASDRAAS-- 245 (261)
T ss_dssp EEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTC---------CTTSSCBCHHHHHHHHHHHHSGGGTT--
T ss_pred EEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHhcC---------CCCCCCcCHHHHHHHHHHHhCchhcC--
Confidence 9999999977433100000000000000 0001111110 01122556899999999888654431
Q ss_pred CCceEEEecCC
Q psy7542 351 NTMRVINLTAN 361 (762)
Q Consensus 351 ~~~~iyNi~s~ 361 (762)
-.++++++.+|
T Consensus 246 itG~~i~VDGG 256 (261)
T 4h15_A 246 ITGAEYTIDGG 256 (261)
T ss_dssp CCSCEEEESTT
T ss_pred ccCcEEEECCc
Confidence 25788888776
|
| >2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-13 Score=126.92 Aligned_cols=105 Identities=20% Similarity=0.348 Sum_probs=81.6
Q ss_pred ccccccceeeecC-CCCeEEEEEEEEEc-----CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHH
Q psy7542 520 NCISVSGYRLIEC-EKPYYVYVIHVRMF-----QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRR 593 (762)
Q Consensus 520 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (762)
..|+|+..+.... .++|++|.|+|... ...|.|.||||||..||+
T Consensus 4 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~----------------------------- 54 (128)
T 2i4k_A 4 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYE----------------------------- 54 (128)
T ss_dssp CCCCBCCCCBCCCSSCCCBCCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHH-----------------------------
T ss_pred EEEEECCceEecCCCcCEEEEEEEEEEcCCCCCCCeEEEEeEhHHHHHHHH-----------------------------
Confidence 3455555554433 48899999999864 678999999999999998
Q ss_pred HHhhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCC-----------CChhHHHHH
Q psy7542 594 QKKRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRS-----------NQPKVLDER 662 (762)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 662 (762)
++++.+.. .....|.+|+|++.. .+++++|+|
T Consensus 55 ~L~~~~~~-------------------------------------~~~~iP~lP~K~~~~~~~~~~~~~~~~~~~~ie~R 97 (128)
T 2i4k_A 55 KLSEKHSQ-------------------------------------NGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKR 97 (128)
T ss_dssp HHHHTCSS-------------------------------------SSCCCCSSSSCCSSSSSSCCCCSCCCSSTTHHHHH
T ss_pred HHHHhCCC-------------------------------------CCcCcCCCCCCcccchhhhhhcCCCCCCHHHHHHH
Confidence 66665521 112678999998753 379999999
Q ss_pred HHHHHHHHHHHHhcCCCh--HHHHhhhCCC
Q psy7542 663 RHLLEIYLKEMFKFGPSR--NQVLAFLGVN 690 (762)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 690 (762)
|..||.||+.++.....+ ..+..||..+
T Consensus 98 r~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 127 (128)
T 2i4k_A 98 RAALERYLQRIVNHPTMLQDPDVREFLEKE 127 (128)
T ss_dssp HHHHHHHHHHHHHCHHHHCSHHHHTTTTCC
T ss_pred HHHHHHHHHHHHcCcccccChHHHHhhCCC
Confidence 999999999999876544 8899999864
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.8e-12 Score=147.43 Aligned_cols=213 Identities=12% Similarity=0.069 Sum_probs=132.6
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCc---chHHHHHHHhcChhHHHHHhhhhcccccCCeEEE
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNK---NSRERLEEIFQSPLYEALKKEQSESAIFEKVIPI 134 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~---~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V 134 (762)
-++||+|+||||+|+||++++++|+++ +.+|+++.|..... ...++++++. +.++.. ... +
T Consensus 16 ~l~gk~~lVTGas~GIG~aiA~~La~~--Ga~Vv~~~r~~~~~~~~~~~~~~~~~~-----~~i~~~------~~~---~ 79 (613)
T 3oml_A 16 RYDGRVAVVTGAGAGLGREYALLFAER--GAKVVVNDLGGTHSGDGASQRAADIVV-----DEIRKA------GGE---A 79 (613)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEC--------------CHHHHH-----HHHHHT------TCC---E
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcccccccCCHHHHHHHH-----HHHHHh------CCe---E
Confidence 368999999999999999999999999 78888888732100 0011111111 111111 112 2
Q ss_pred EeecCCCCCCCCHHHHHhhcC-------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCc
Q psy7542 135 NGDVAVPDLGISAEDRQMLSE-------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHL 197 (762)
Q Consensus 135 ~GDl~~~~LGLs~~~l~~l~~-------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~l 197 (762)
.+|+++.. +.+++++ .+|++||+||.... .+.++..+++|+.|+.++++++... .+.
T Consensus 80 ~~D~~d~~------~~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~ 153 (613)
T 3oml_A 80 VADYNSVI------DGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNY 153 (613)
T ss_dssp EECCCCGG------GHHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEEeCCHH------HHHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 47888764 4444443 58999999997642 2456779999999999999988431 245
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---- 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---- 273 (762)
.++|++||..+.... + ....|+.||+..+.+.+..+..
T Consensus 154 g~IV~isS~a~~~~~----------~----------------------------~~~~Y~asKaal~~lt~~la~e~~~~ 195 (613)
T 3oml_A 154 GRIIMTSSNSGIYGN----------F----------------------------GQVNYTAAKMGLIGLANTVAIEGARN 195 (613)
T ss_dssp EEEEEECCHHHHHCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CEEEEECCHHHcCCC----------C----------------------------CChHHHHHHHHHHHHHHHHHHHhCcc
Confidence 799999997543211 0 0157999999999888877652
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+.+..+.||.+..-.. ... +. .....+..+|+|++++.++... . ...+
T Consensus 196 gI~vn~v~Pg~~t~~~~--------~~~-~~-------------------~~~~~~~pedvA~~v~~L~s~~-~--~~tG 244 (613)
T 3oml_A 196 NVLCNVIVPTAASRMTE--------GIL-PD-------------------ILFNELKPKLIAPVVAYLCHES-C--EDNG 244 (613)
T ss_dssp TEEEEEEEEC------C--------CCC-CH-------------------HHHTTCCGGGTHHHHHHTTSTT-C--CCCS
T ss_pred CeEEEEEECCCCChhhh--------hcc-ch-------------------hhhhcCCHHHHHHHHHHhcCCC-c--CCCc
Confidence 89999999986422110 000 00 1123346789999998887665 2 1257
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++++.+|
T Consensus 245 ~~i~vdGG 252 (613)
T 3oml_A 245 SYIESAAG 252 (613)
T ss_dssp CEEEEETT
T ss_pred eEEEECCC
Confidence 88888776
|
| >2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.3e-12 Score=119.83 Aligned_cols=117 Identities=14% Similarity=0.150 Sum_probs=87.4
Q ss_pred CCccccccceeee-cCCCCeEEEEEEEEEc-CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHH
Q psy7542 518 KENCISVSGYRLI-ECEKPYYVYVIHVRMF-QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQK 595 (762)
Q Consensus 518 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (762)
....+.|.+++.. ...+.|++|+|+|... +..|.|.||||||..||. ++
T Consensus 7 ~~~~v~v~~~ek~~~~~~~y~~Y~I~V~~~d~~~~~V~RRYseF~~Lh~-----------------------------~L 57 (149)
T 2l73_A 7 AGPRYPVSVQGAALVQIKRLQTFAFSVRWSDGSDTFVRRSWDEFRQLKK-----------------------------TL 57 (149)
T ss_dssp CCCCCEEEEEEEEEECCSSSCEEEEEEEETTSCEEEEEEEHHHHHHHHH-----------------------------HH
T ss_pred ceeEEEEEeeeEeecCCCceEEEEEEEEEeCCCEEEEEEehHHHHHHHH-----------------------------HH
Confidence 5567777777653 3367888899999865 677999999999999999 56
Q ss_pred hhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC--CCChhHHHHHHHHHHHHHHHH
Q psy7542 596 KRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR--SNQPKVLDERRHLLEIYLKEM 673 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 673 (762)
+..+.. .-|..+ ...-..|.||+|+.. ++.++++++||+.||.||+.+
T Consensus 58 ~~~FP~-----------------------------e~~~~~-~~~r~lP~lP~k~~~~~~~~~~~~e~R~~~Le~YL~~L 107 (149)
T 2l73_A 58 KETFPV-----------------------------EAGLLR-RSDRVLPKLLDAPLLGRVGRTSRGLARLQLLETYSRRL 107 (149)
T ss_dssp HHHCGG-----------------------------GGSSSC-SSCCSSCCCCCCSCCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCch-----------------------------hhcccc-cccccccCCCCCeeeccccchHHHHHHHHHHHHHHHHH
Confidence 655532 001101 111247899999975 356899999999999999999
Q ss_pred HhcCCCh---HHHHhhhCCCCCC
Q psy7542 674 FKFGPSR---NQVLAFLGVNSKN 693 (762)
Q Consensus 674 ~~~~~~~---~~~~~~~~~~~~~ 693 (762)
++..+.. ..|++||...+..
T Consensus 108 l~lp~~i~~s~~v~~Ff~~~~~D 130 (149)
T 2l73_A 108 LATAERVARSPTITGFFAPQPLD 130 (149)
T ss_dssp HHHCHHHHHSHHHHHHHSCCGGG
T ss_pred HhCCccccCCHHHHHHhCCCccc
Confidence 9987633 9999999988543
|
| >2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=118.69 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=82.3
Q ss_pred CCccccccceeeecCCCCeEEEEEEEEEc-CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHh
Q psy7542 518 KENCISVSGYRLIECEKPYYVYVIHVRMF-QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKK 596 (762)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (762)
....++|.++...+ .+|+|+|+|.+. +..|.|.||||||..||. +++
T Consensus 17 ~~~~~sI~~~~~~~---~~y~Y~I~V~~~d~~~~~V~RRYsdF~~Lh~-----------------------------~L~ 64 (156)
T 2v6v_A 17 LLVKASVESFGLED---EKYWFLVCCELSNGKTRQLKRYYQDFYDLQV-----------------------------QLL 64 (156)
T ss_dssp CEEEEEEEEEEEET---TEEEEEEEEEETTSCEEEEEECHHHHHHHHH-----------------------------HHH
T ss_pred cceEEEEeeEEEEC---CEEEEEEEEEEcCCCEEEEEEEhHHHHHHHH-----------------------------HHH
Confidence 34456666776653 377899999985 679999999999999999 555
Q ss_pred hhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHHhc
Q psy7542 597 RNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKF 676 (762)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (762)
..+..- .|...++ | |- ......|.+|+|++. ++++++++||..||.||+.++..
T Consensus 65 ~~fP~e--------------~g~~~~~-~-------g~---~~~~~lP~LP~K~~~-~~~~~~e~Rr~~Le~YL~~Ll~l 118 (156)
T 2v6v_A 65 DAFPAE--------------AGKLRDA-G-------GQ---WSKRIMPYIPGPVPY-VTNSITKKRKEDLNIYVADLVNL 118 (156)
T ss_dssp HHCTTT--------------TTCCBCT-T-------CC---BCCCCSCCCCCCCSS-CCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHcchh--------------hcccccc-c-------cc---ccccccCCCCCCccc-CCHHHHHHHHHHHHHHHHHHHhC
Confidence 544210 0100000 0 00 011256889999875 46899999999999999999987
Q ss_pred CCCh---HHHHhhhCCCCC
Q psy7542 677 GPSR---NQVLAFLGVNSK 692 (762)
Q Consensus 677 ~~~~---~~~~~~~~~~~~ 692 (762)
.+.. ..|++||...+.
T Consensus 119 p~~i~~s~~v~~Ff~~~~~ 137 (156)
T 2v6v_A 119 PDYISRSEMVHSLFVVLNN 137 (156)
T ss_dssp CHHHHTSHHHHHTTSCCSS
T ss_pred CccccCCHHHHHHhCCCCc
Confidence 6522 899999998854
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.5e-10 Score=122.51 Aligned_cols=249 Identities=11% Similarity=0.016 Sum_probs=121.2
Q ss_pred cCCCEEEEECC--CChhHHHHHHHHHHcCCCcEEEEEeCCCC-----CcchHHHHHHH--hcC----hhHHHHHhhhhcc
Q psy7542 59 LEHKNIFITGA--SGFVGKVLLEKILRTCENVKIYILLRPKK-----NKNSRERLEEI--FQS----PLYEALKKEQSES 125 (762)
Q Consensus 59 ~~gk~VLVTGA--TGFLG~~LvekLL~~gp~v~V~~LvR~~~-----~~~~~eRl~~l--l~~----~~f~~l~~~~~~~ 125 (762)
++||++||||| +|+||++++++|++. +.+|+++.|... .....+++++. +.. ..-+.++...
T Consensus 7 l~~k~~lVTGa~~s~GIG~aia~~la~~--G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 81 (319)
T 2ptg_A 7 LRGKTAFVAGVADSNGYGWAICKLLRAA--GARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKP--- 81 (319)
T ss_dssp CTTCEEEEECCCCTTSHHHHHHHHHHHT--TCEEEEEECHHHHHHHHC--------------------------------
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHC--CCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcc---
Confidence 47899999999 899999999999998 678888876410 00000111110 000 0000000000
Q ss_pred cccCCeEEEEeecC--CCC-CCC-----------CHHHHHhh-------cCCccEEEEcccccC-----c----cccHHH
Q psy7542 126 AIFEKVIPINGDVA--VPD-LGI-----------SAEDRQML-------SETIHIVYHIAATVR-----F----DDYMQT 175 (762)
Q Consensus 126 ~~~~kV~~V~GDl~--~~~-LGL-----------s~~~l~~l-------~~~vDiViH~AA~v~-----f----~~~l~~ 175 (762)
.....+..+.+|+. ++. +-. +.++++.+ ...+|++||+||... + .+.++.
T Consensus 82 ~~~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~ 161 (319)
T 2ptg_A 82 VDLVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLA 161 (319)
T ss_dssp ---CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHH
T ss_pred ccccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHH
Confidence 00001244444431 111 000 00122222 237899999998541 1 134667
Q ss_pred HHHHhHHHHHHHHHHHHHc-CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCc
Q psy7542 176 YVFLNTRGTRDMLNLSKQM-IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPN 254 (762)
Q Consensus 176 ~~~~NV~GT~~LLelA~~~-~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn 254 (762)
.+++|+.|+..+++++... ..-.++|++||..+.... | .+..
T Consensus 162 ~~~vN~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~----------~---------------------------~~~~ 204 (319)
T 2ptg_A 162 AVSSSSYSFVSLLQHFLPLMKEGGSALALSYIASEKVI----------P---------------------------GYGG 204 (319)
T ss_dssp HHHHHTHHHHHHHHHHGGGEEEEEEEEEEEECC-----------------------------------------------
T ss_pred HHhHhhHHHHHHHHHHHHHHhcCceEEEEecccccccc----------C---------------------------ccch
Confidence 8999999999999998753 112689999998653211 0 0013
Q ss_pred hhHhhhHHHHHHHHHHHH-----cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccc
Q psy7542 255 GYAYTKCLCEGVVTEYME-----AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFL 329 (762)
Q Consensus 255 ~Y~~SK~~aE~lv~~~~~-----~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~V 329 (762)
.|+.||+..+.+.+..+. .|+.++.++||.|-.+.....+. . ....+...... .+ ........+.
T Consensus 205 ~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~~~~~~----~-~~~~~~~~~~~----~~-~~~~p~~r~~ 274 (319)
T 2ptg_A 205 GMSSAKAALESDCRTLAFEAGRARAVRVNCISAGPLKSRAASAIGK----A-GDKTFIDLAID----YS-EANAPLQKEL 274 (319)
T ss_dssp --------THHHHHHHHHHHHHHHCCEEEEEEECCCC-----------------------------------------CC
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCeeEEEEeeCCccChhhhhccc----c-cchhhHHHHHH----HH-hccCCCCCCC
Confidence 699999987777765432 38999999999886543211000 0 00000000000 00 0000112356
Q ss_pred cHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 330 PVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 330 pVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
..+|+|++++.++..... ...++++.+.++
T Consensus 275 ~peevA~~v~~L~s~~~~--~itG~~i~vdGG 304 (319)
T 2ptg_A 275 ESDDVGRAALFLLSPLAR--AVTGATLYVDNG 304 (319)
T ss_dssp CHHHHHHHHHHHTSGGGT--TCCSCEEEESTT
T ss_pred CHHHHHHHHHHHhCcccC--CccCCEEEECCC
Confidence 889999999998875432 124788888876
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=140.36 Aligned_cols=165 Identities=16% Similarity=0.184 Sum_probs=124.5
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHH-HcCCCc-EEEEEeCCCCCcc-hHHHHHHHhcChhHHHHHhhhhcccccCCeEEE
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKIL-RTCENV-KIYILLRPKKNKN-SRERLEEIFQSPLYEALKKEQSESAIFEKVIPI 134 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL-~~gp~v-~V~~LvR~~~~~~-~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V 134 (762)
+-.++++|||||+|.||..+++.|. +. +. +|+++.|+..... .++-++++ .....++.++
T Consensus 527 ~~~~~~~lItGg~~GlG~aiA~~la~~~--Ga~~vvl~~R~~~~~~~~~~~~~~l---------------~~~G~~v~~~ 589 (795)
T 3slk_A 527 WDAAGTVLVTGGTGALGAEVARHLVIER--GVRNLVLVSRRGPAASGAAELVAQL---------------TAYGAEVSLQ 589 (795)
T ss_dssp CCTTSEEEEETTTSHHHHHHHHHHHHTS--SCCEEEEEESSGGGSTTHHHHHHHH---------------HHTTCEEEEE
T ss_pred cccccceeeccCCCCcHHHHHHHHHHHc--CCcEEEEeccCccchHHHHHHHHHH---------------HhcCCcEEEE
Confidence 3468999999999999999999999 56 77 6899999744322 22222222 1123679999
Q ss_pred EeecCCCCCCCCHHHHHhhcC------CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHcCCccEEE
Q psy7542 135 NGDVAVPDLGISAEDRQMLSE------TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFV 201 (762)
Q Consensus 135 ~GDl~~~~LGLs~~~l~~l~~------~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV 201 (762)
.+|+++++ +++++++ .+|+|||+|+.... .+.++..+++|+.|+.++.+++. +.+ +||
T Consensus 590 ~~Dvsd~~------~v~~~~~~~~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~--~~l-~iV 660 (795)
T 3slk_A 590 ACDVADRE------TLAKVLASIPDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELID--PDV-ALV 660 (795)
T ss_dssp ECCTTCHH------HHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSC--TTS-EEE
T ss_pred EeecCCHH------HHHHHHHHHHHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHh--hCC-EEE
Confidence 99999876 5665543 47999999998642 24567789999999999999883 355 899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEe
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILR 281 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvR 281 (762)
++||..+..... ....|+.+|...+.+.++.+..|++++.+-
T Consensus 661 ~~SS~ag~~g~~--------------------------------------g~~~YaAaka~~~alA~~~~~~Gi~v~sI~ 702 (795)
T 3slk_A 661 LFSSVSGVLGSG--------------------------------------GQGNYAAANSFLDALAQQRQSRGLPTRSLA 702 (795)
T ss_dssp EEEETHHHHTCS--------------------------------------SCHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEccHHhcCCCC--------------------------------------CCHHHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 999985432110 015799999999999988887799999999
Q ss_pred eeeec
Q psy7542 282 PSIII 286 (762)
Q Consensus 282 Ps~V~ 286 (762)
||.+-
T Consensus 703 pG~v~ 707 (795)
T 3slk_A 703 WGPWA 707 (795)
T ss_dssp ECCCS
T ss_pred CCeEC
Confidence 99664
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.1e-10 Score=141.09 Aligned_cols=235 Identities=11% Similarity=0.037 Sum_probs=145.1
Q ss_pred cCCCEEEEECCCCh-hHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGF-VGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGF-LG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
++||+||||||+|. ||.++++.|++. |.+|+++.|.... ...+-.+++ ..+. .....++.++.+|
T Consensus 650 L~gKvaLVTGASgGgIG~aIAr~LA~~--GA~VVl~~~R~~~-~l~~~a~eL---------~~el--~~~G~~v~~v~~D 715 (1878)
T 2uv9_A 650 FQGKHALMTGAGAGSIGAEVLQGLLSG--GAKVIVTTSRFSR-QVTEYYQGI---------YARC--GARGSQLVVVPFN 715 (1878)
T ss_dssp CTTCEEEEESCCTTSHHHHHHHHHHHT--TCEEEEEESSCCH-HHHHHHHHH---------HHHH--CCTTCEEEEEECC
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHC--CCEEEEEecCChH-HHHHHHHHH---------HHHh--hccCCeEEEEEcC
Confidence 57899999999999 999999999998 7788888543221 111111111 1111 1123578899999
Q ss_pred cCCCCCCCCHHHHHhhc----------C-CccEEEEcccccCcc----------ccHHHHHHHhHHHHHHHHHHHHHcCC
Q psy7542 138 VAVPDLGISAEDRQMLS----------E-TIHIVYHIAATVRFD----------DYMQTYVFLNTRGTRDMLNLSKQMIH 196 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~----------~-~vDiViH~AA~v~f~----------~~l~~~~~~NV~GT~~LLelA~~~~~ 196 (762)
+++++ +++.++ . .+|+|||+||..... +.+...+++|+.|+..++++++..+.
T Consensus 716 Vsd~e------sV~alv~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~ 789 (1878)
T 2uv9_A 716 QGSKQ------DVEALVNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERG 789 (1878)
T ss_dssp TTCHH------HHHHHHHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHT
T ss_pred CCCHH------HHHHHHHHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99865 555443 2 589999999975321 34677899999999999887543322
Q ss_pred -----ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHH
Q psy7542 197 -----LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYM 271 (762)
Q Consensus 197 -----lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~ 271 (762)
..+||++||..+.... ...|+.||+..+.++....
T Consensus 790 M~~~~~G~IVnISS~ag~~gg----------------------------------------~~aYaASKAAL~aLt~~la 829 (1878)
T 2uv9_A 790 YETRPAQVILPLSPNHGTFGN----------------------------------------DGLYSESKLALETLFNRWY 829 (1878)
T ss_dssp CCSCCEEECCEECSCSSSSSC----------------------------------------CSSHHHHHHHHTTHHHHHH
T ss_pred HHhCCCCEEEEEcchhhccCC----------------------------------------chHHHHHHHHHHHHHHHHH
Confidence 2589999998653220 1579999999999877654
Q ss_pred Hc----CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc-
Q psy7542 272 EA----GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL- 346 (762)
Q Consensus 272 ~~----glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~- 346 (762)
.. +++++.+.||.|-|+. + .............. + ......+++|++++.++....
T Consensus 830 AeEla~~IrVNaVaPG~V~gT~---m-------~~~~~~~~~~~~~~-------p---lr~~sPeEVA~avlfLaSd~a~ 889 (1878)
T 2uv9_A 830 SESWGNYLTICGAVIGWTRGTG---L-------MSANNLVAEGVEKL-------G---VRTFSQQEMAFNLLGLMAPAIV 889 (1878)
T ss_dssp HSTTTTTEEEEEEEECCBCCTT---S-------CSHHHHTHHHHHTT-------T---CCCBCHHHHHHHHHHHHSHHHH
T ss_pred HHHcCCCeEEEEEEecceecCc---c-------cccchhhHHHHHhc-------C---CCCCCHHHHHHHHHHHhCCccc
Confidence 32 4888999998765221 1 00001111111110 0 123478999999888875432
Q ss_pred CCCCCCceEEEec--CCCCCcccHHHHHHHH
Q psy7542 347 SNPGNTMRVINLT--ANKDFQITWYDIIENG 375 (762)
Q Consensus 347 ~~~~~~~~iyNi~--s~~~~piT~~el~~~i 375 (762)
.. ..+.++.+. ++......+.++...+
T Consensus 890 s~--iTGq~I~VDVDGG~~~~~~l~el~~~l 918 (1878)
T 2uv9_A 890 NL--CQSDPVFADLNGGLQFIPDLKGLMTKL 918 (1878)
T ss_dssp HH--HTTSCEEEEESCSGGGCTTHHHHHHHH
T ss_pred cc--ccCcEEEEEcCCCccccCCHHHHHHHH
Confidence 00 024556552 4422334556555443
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-10 Score=124.25 Aligned_cols=246 Identities=11% Similarity=0.016 Sum_probs=136.4
Q ss_pred cCCCEEEEECC--CChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGA--SGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGA--TGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
++||+|+|||| +|+||++++++|++. +.+|+++.|... ..|..+..+....+.+.... .......+..+.+
T Consensus 7 l~gk~~lVTGa~~s~GIG~aia~~la~~--G~~Vv~~~r~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (315)
T 2o2s_A 7 LRGQTAFVAGVADSHGYGWAIAKHLASA--GARVALGTWPPV----LGLFQKSLQSGRLDEDRKLP-DGSLIEFAGVYPL 79 (315)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHTT--TCEEEEEECHHH----HHHHHHHHHHTTTHHHHBCT-TSCBCCCSCEEEC
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHC--CCEEEEEecccc----cchhhhhhhhhhhhhhhhhh-ccccccccccccc
Confidence 57899999999 899999999999998 678888887421 01110000000000010000 0000001234444
Q ss_pred ecC--CCC-CCC-----------CHHHHHhh-------cCCccEEEEcccccC-----c----cccHHHHHHHhHHHHHH
Q psy7542 137 DVA--VPD-LGI-----------SAEDRQML-------SETIHIVYHIAATVR-----F----DDYMQTYVFLNTRGTRD 186 (762)
Q Consensus 137 Dl~--~~~-LGL-----------s~~~l~~l-------~~~vDiViH~AA~v~-----f----~~~l~~~~~~NV~GT~~ 186 (762)
|+. ++. +.. +.++++.+ ...+|++||+||... + .+.++..+++|+.|+..
T Consensus 80 d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~ 159 (315)
T 2o2s_A 80 DAAFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVS 159 (315)
T ss_dssp CTTCSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred cccccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHH
Confidence 432 111 000 01123322 247899999998542 1 13466789999999999
Q ss_pred HHHHHHHc-CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHH
Q psy7542 187 MLNLSKQM-IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEG 265 (762)
Q Consensus 187 LLelA~~~-~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~ 265 (762)
+++++... ..-.++|++||..+.... | .+...|+.||+..+.
T Consensus 160 l~~~~~~~m~~~g~Iv~isS~~~~~~~----------~---------------------------~~~~~Y~asKaal~~ 202 (315)
T 2o2s_A 160 LLQHFGPIMNEGGSAVTLSYLAAERVV----------P---------------------------GYGGGMSSAKAALES 202 (315)
T ss_dssp HHHHHSTTEEEEEEEEEEEEGGGTSCC----------T---------------------------TCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEEecccccccC----------C---------------------------CccHHHHHHHHHHHH
Confidence 99998653 112589999998653211 0 011369999998888
Q ss_pred HHHHHHH-----cCCCEEEEeeeeeccCCCCCCCCCCCCCCCc-hHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHH
Q psy7542 266 VVTEYME-----AGMPCMILRPSIIIPIWKDPLPGWTDNINGP-TGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVL 339 (762)
Q Consensus 266 lv~~~~~-----~glpv~IvRPs~V~G~~~eP~pGWidn~~gp-~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii 339 (762)
+.+..+. .|+.++.++||.|-.+.....+. ...... ..+........ ....+...+|+|++++
T Consensus 203 l~~~la~el~~~~gIrvn~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~~~~~~~---------p~~r~~~pedvA~~v~ 271 (315)
T 2o2s_A 203 DTRTLAWEAGQKYGVRVNAISAGPLKSRAASAIGK--SGEKSFIDYAIDYSYNNA---------PLRRDLHSDDVGGAAL 271 (315)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECCCCCHHHHHTTC--SSSSCHHHHHHHHHHHHS---------SSCCCCCHHHHHHHHH
T ss_pred HHHHHHHHhCcccCeEEEEEecccccchhhhhccc--cccchhHHHHHHHHhccC---------CCCCCCCHHHHHHHHH
Confidence 7765432 38999999999875432110000 000000 00000000000 0123567899999999
Q ss_pred HHhhcccCCCCCCceEEEecCC
Q psy7542 340 LSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 340 ~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
.++..... ...++++.+.++
T Consensus 272 ~L~s~~~~--~itG~~i~vdGG 291 (315)
T 2o2s_A 272 FLLSPLAR--AVSGVTLYVDNG 291 (315)
T ss_dssp HHTSGGGT--TCCSCEEEESTT
T ss_pred HHhCchhc--cCcCCEEEECCC
Confidence 98865432 124778888776
|
| >2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=5.9e-11 Score=109.00 Aligned_cols=95 Identities=19% Similarity=0.281 Sum_probs=75.7
Q ss_pred cccccceeeecCCCCeEEEEEEEEEc-CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhc
Q psy7542 521 CISVSGYRLIECEKPYYVYVIHVRMF-QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNC 599 (762)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (762)
.++|.++... ..+.|+|.|.-. +..|.|.|||+||..||+ |+|+.+
T Consensus 27 ~~~v~~~~k~----~~~~Yvi~V~~sd~~~~~~~rry~eF~~LH~-----------------------------qLkk~F 73 (127)
T 2wwe_A 27 RATILGFSKK----SSNLYLIQVTHSNNETSLTEKSFEQFSKLHS-----------------------------QLQKQF 73 (127)
T ss_dssp EEEEEEEETT----EEEEEEEEEEETTSCEEEEEECHHHHHHHHH-----------------------------HHHHHT
T ss_pred EEEEEEEEec----ccEEEEEEEEEeCCCeEEEEEEHHHHHHHHH-----------------------------HHHHhC
Confidence 5667777432 456799999766 679999999999999999 888888
Q ss_pred hhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHHhcCCC
Q psy7542 600 KYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGPS 679 (762)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (762)
.. ...|.||+|++....+.-++ ||.+||.|||.++...+.
T Consensus 74 p~---------------------------------------~~LP~fP~K~ll~~t~~~~e-Rr~~Le~Ylq~Ll~~~~~ 113 (127)
T 2wwe_A 74 AS---------------------------------------LTLPEFPHWWHLPFTNSDHR-RFRDLNHYMEQILNVSHE 113 (127)
T ss_dssp TT---------------------------------------SCCCCCCCTTSHHHHHCHHH-HHHHHHHHHHHHTTSCHH
T ss_pred cc---------------------------------------ccCCCCCCccccCcCHHHHH-HHHHHHHHHHHHhcCCce
Confidence 44 37999999997555556666 999999999999886544
Q ss_pred h---HHHHhhhC
Q psy7542 680 R---NQVLAFLG 688 (762)
Q Consensus 680 ~---~~~~~~~~ 688 (762)
. +.+.+||-
T Consensus 114 Ia~Sd~v~~Ff~ 125 (127)
T 2wwe_A 114 VTNSDCVLSFFL 125 (127)
T ss_dssp HHTSHHHHHHHH
T ss_pred eecCHHHHHHhC
Confidence 4 88888873
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=138.02 Aligned_cols=168 Identities=15% Similarity=0.101 Sum_probs=118.2
Q ss_pred cCCCEEEEECCCCh-hHHHHHHHHHHcCCCcEEEEEe-CCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGASGF-VGKVLLEKILRTCENVKIYILL-RPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGATGF-LG~~LvekLL~~gp~v~V~~Lv-R~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
++||+||||||+|. ||.++++.|++. |.+|+++. |... ...+-.+++ ..+. .....++.++.+
T Consensus 673 l~gKvaLVTGASsGgIG~aIA~~La~~--GA~Vvl~~~R~~~--~l~~~~~eL---------~~~~--~~~g~~v~~v~~ 737 (1887)
T 2uv8_A 673 FKDKYVLITGAGKGSIGAEVLQGLLQG--GAKVVVTTSRFSK--QVTDYYQSI---------YAKY--GAKGSTLIVVPF 737 (1887)
T ss_dssp CTTCEEEEESCCSSSHHHHHHHHHHHT--TCEEEEEESSCCH--HHHHHHHHH---------HHHH--CCTTCEEEEEEC
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHC--CCEEEEEecCCHH--HHHHHHHHH---------HHHh--hcCCCeEEEEEe
Confidence 67899999999999 999999999998 77888884 4321 111111111 1111 112357889999
Q ss_pred ecCCCCCCCCHHHHHhhc------------C-CccEEEEcccccCcc----------ccHHHHHHHhHHHHHHHHHHHHH
Q psy7542 137 DVAVPDLGISAEDRQMLS------------E-TIHIVYHIAATVRFD----------DYMQTYVFLNTRGTRDMLNLSKQ 193 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~------------~-~vDiViH~AA~v~f~----------~~l~~~~~~NV~GT~~LLelA~~ 193 (762)
|+++++ +++.++ . .+|++||+||..... +.+...+++|+.|+..++++++.
T Consensus 738 DVsd~~------sV~alv~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~ 811 (1887)
T 2uv8_A 738 NQGSKQ------DVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKS 811 (1887)
T ss_dssp CTTCHH------HHHHHHHHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred cCCCHH------HHHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999875 444433 1 589999999975321 34567899999999999998854
Q ss_pred cCC-----ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHH-H
Q psy7542 194 MIH-----LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGV-V 267 (762)
Q Consensus 194 ~~~-----lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~l-v 267 (762)
.+. -.+||++||..+.... ...|+.||+..+.+ .
T Consensus 812 lp~m~~~~~G~IVnISS~ag~~gg----------------------------------------~~aYaASKAAL~~Ltt 851 (1887)
T 2uv8_A 812 ARGIETRPAQVILPMSPNHGTFGG----------------------------------------DGMYSESKLSLETLFN 851 (1887)
T ss_dssp TTTCCSCCEEEEEEECSCTTCSSC----------------------------------------BTTHHHHHHHGGGHHH
T ss_pred hhhhhhCCCCEEEEEcChHhccCC----------------------------------------CchHHHHHHHHHHHHH
Confidence 433 2589999998653220 15799999999998 4
Q ss_pred HHHHHc---CCCEEEEeeeeecc
Q psy7542 268 TEYMEA---GMPCMILRPSIIIP 287 (762)
Q Consensus 268 ~~~~~~---glpv~IvRPs~V~G 287 (762)
+..+.. .+.++.+.||.|-+
T Consensus 852 r~lA~ela~~IrVNaV~PG~V~t 874 (1887)
T 2uv8_A 852 RWHSESWANQLTVCGAIIGWTRG 874 (1887)
T ss_dssp HHHHSSCTTTEEEEEEEECCEEC
T ss_pred HHHHHHhCCCeEEEEEEeccccc
Confidence 444442 38899999998864
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.3e-10 Score=139.54 Aligned_cols=168 Identities=15% Similarity=0.127 Sum_probs=116.6
Q ss_pred cCCCEEEEECCCCh-hHHHHHHHHHHcCCCcEEEEE-eCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGASGF-VGKVLLEKILRTCENVKIYIL-LRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGATGF-LG~~LvekLL~~gp~v~V~~L-vR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
++||+||||||+|. ||.++++.|++. |.+|+++ .|...... +-.+++ ..+. .....++.++.+
T Consensus 474 L~GKvALVTGASgGGIGrAIAr~LA~~--GA~VVL~~~R~~e~le--e~a~eL---------~ael--~a~Ga~V~vV~~ 538 (1688)
T 2pff_A 474 FKDKYVLITGAGKGSIGAEVLQGLLQG--GAKVVVTTSRFSKQVT--DYYQSI---------YAKY--GAKGSTLIVVPF 538 (1688)
T ss_dssp CCSCCEEECSCSSSSTHHHHHHHHHHH--TCEEEEEESSCSTTTT--THHHHT---------TTTT--CCTTCEEEEEEC
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHHC--cCEEEEEeCCCHHHHH--HHHHHH---------HHHh--hcCCCeEEEEEe
Confidence 57899999999998 999999999999 7788887 45432211 111111 1110 112357889999
Q ss_pred ecCCCCCCCCHHHHHhhc------------C-CccEEEEcccccCcc----------ccHHHHHHHhHHHHHHHHHHHHH
Q psy7542 137 DVAVPDLGISAEDRQMLS------------E-TIHIVYHIAATVRFD----------DYMQTYVFLNTRGTRDMLNLSKQ 193 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~------------~-~vDiViH~AA~v~f~----------~~l~~~~~~NV~GT~~LLelA~~ 193 (762)
|+++++ +++.++ . .+|+|||+||..... +.+...+++|+.|+..++++++.
T Consensus 539 DVTD~e------sVeaLVe~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~ 612 (1688)
T 2pff_A 539 NQGSKQ------DVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKS 612 (1688)
T ss_dssp CSSSTT------HHHHHHHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CCCCHH------HHHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999987 454433 1 589999999965321 34567899999999999998844
Q ss_pred cCC-----ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHH
Q psy7542 194 MIH-----LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVT 268 (762)
Q Consensus 194 ~~~-----lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~ 268 (762)
.+. -.+||++||..+.... ...|+.||+..+.++.
T Consensus 613 lp~M~krggGrIVnISSiAG~~Gg----------------------------------------~saYaASKAAL~aLtt 652 (1688)
T 2pff_A 613 ARGIETRPAQVILPMSPNHGTFGG----------------------------------------DGMYSESKLSLETLFN 652 (1688)
T ss_dssp HHTCTTSCEEECCCCCSCTTTSSC----------------------------------------BTTHHHHHHHHTHHHH
T ss_pred ChHHHhCCCCEEEEEEChHhccCC----------------------------------------chHHHHHHHHHHHHHH
Confidence 322 2589999998653220 1579999999999844
Q ss_pred HH-HHc---CCCEEEEeeeeecc
Q psy7542 269 EY-MEA---GMPCMILRPSIIIP 287 (762)
Q Consensus 269 ~~-~~~---glpv~IvRPs~V~G 287 (762)
.. +.. +++++.+.||.|-+
T Consensus 653 rsLAeEla~~IRVNaVaPG~V~T 675 (1688)
T 2pff_A 653 RWHSESWANQLTVCGAIIGWTRG 675 (1688)
T ss_dssp HTTTSSCTTTEECCCCCCCCCCC
T ss_pred HHHHHHcCCCeEEEEEEECcCcC
Confidence 43 331 37888889998864
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-09 Score=116.52 Aligned_cols=184 Identities=10% Similarity=0.018 Sum_probs=115.7
Q ss_pred CCCEEEEECCCC--hhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 60 EHKNIFITGASG--FVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 60 ~gk~VLVTGATG--FLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
++|+++||||++ .||.+++++|++. +.+|++..|.... ....|-.+-.+.. ....... ......+.++.+|
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~--G~~Vv~~~~~~~~-~l~~r~~~~~~~~--~~~~~~~--~~~~~~~~~~~~D 73 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKR--NVKIIFGIWPPVY-NIFMKNYKNGKFD--NDMIIDK--DKKMNILDMLPFD 73 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHT--TCEEEEEECHHHH-HHHHHHHHTTTTT--GGGBCSS--SCBCCEEEEEECC
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHC--CCEEEEEecCccc-cccccchHHHHHH--HHHHHhh--ccccccccccccc
Confidence 478999999875 9999999999998 7788877764310 0001111100000 0000000 1122447889999
Q ss_pred cCCCCCC-CCHH-------------HHHhh-------cCCccEEEEcccccC-----c----cccHHHHHHHhHHHHHHH
Q psy7542 138 VAVPDLG-ISAE-------------DRQML-------SETIHIVYHIAATVR-----F----DDYMQTYVFLNTRGTRDM 187 (762)
Q Consensus 138 l~~~~LG-Ls~~-------------~l~~l-------~~~vDiViH~AA~v~-----f----~~~l~~~~~~NV~GT~~L 187 (762)
+++.... ++.+ ++.++ ...+|++||+||... + .+.++..+++|+.|+..+
T Consensus 74 v~~~~~~~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l 153 (329)
T 3lt0_A 74 ASFDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISL 153 (329)
T ss_dssp TTCSSGGGCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHH
T ss_pred ccccchhhhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHH
Confidence 9887211 1122 23322 246899999998531 1 244677899999999999
Q ss_pred HHHHHHc-CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCc-hhHhhhHHHHH
Q psy7542 188 LNLSKQM-IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPN-GYAYTKCLCEG 265 (762)
Q Consensus 188 LelA~~~-~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn-~Y~~SK~~aE~ 265 (762)
.+++... ..-.++|++||..+..... . .. .|+.||+..+.
T Consensus 154 ~~~~~p~m~~~g~Iv~isS~~~~~~~~----------~----------------------------~~~~Y~asKaal~~ 195 (329)
T 3lt0_A 154 CKYFVNIMKPQSSIISLTYHASQKVVP----------G----------------------------YGGGMSSAKAALES 195 (329)
T ss_dssp HHHHGGGEEEEEEEEEEECGGGTSCCT----------T----------------------------CTTTHHHHHHHHHH
T ss_pred HHHHHHHHhhCCeEEEEeCccccCCCC----------c----------------------------chHHHHHHHHHHHH
Confidence 9988653 1115899999986543211 0 12 79999998877
Q ss_pred HHHHH----HH-cCCCEEEEeeeeeccC
Q psy7542 266 VVTEY----ME-AGMPCMILRPSIIIPI 288 (762)
Q Consensus 266 lv~~~----~~-~glpv~IvRPs~V~G~ 288 (762)
+.+.. +. .|+.+..+.||.|-.+
T Consensus 196 ~~~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 196 DTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred HHHHHHHHhCCccCeEEEEEecceeech
Confidence 76554 33 3899999999988654
|
| >3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.5e-10 Score=125.38 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=74.4
Q ss_pred cCCCCCccccccceeee---cCCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhh
Q psy7542 514 HPGPKENCISVSGYRLI---ECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQ 590 (762)
Q Consensus 514 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (762)
...+....|.|+..+.. ..-++|++|.|++.. ..|.|.||||||..||+
T Consensus 15 ~~~~~~~~i~V~dp~k~~~~~g~~~y~~Y~I~~~~--~~~~V~RRYsdF~~L~~-------------------------- 66 (366)
T 3dyt_A 15 VYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTN--TNRSVNHRYKHFDWLYE-------------------------- 66 (366)
T ss_dssp CCCSSCCCEEEECGGGSSSCCCCCSSCEEEEEETT--CSCCEEEEHHHHHHHHH--------------------------
T ss_pred cCCCCCeEEEEcCceeecCCCCCcCeEEEEEEEec--CcEEEEeeHHHHHHHHH--------------------------
Confidence 33334445555555443 233799999998853 57999999999999998
Q ss_pred hHHHHhhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC-CCChhHHHHHHHHHHHH
Q psy7542 591 NRRQKKRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR-SNQPKVLDERRHLLEIY 669 (762)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 669 (762)
++++.+.. + ...|.+|||++. +.+++++++||.+||.|
T Consensus 67 ---~L~~~~p~----------------~----------------------~~iP~lP~K~~~g~~~~~fie~Rr~~Le~f 105 (366)
T 3dyt_A 67 ---RLLVKFGS----------------A----------------------IPIPSLPDKQVTGRFEEEFIKMRMERLQAW 105 (366)
T ss_dssp ---HHHHHHTT----------------T----------------------SCCCCCC-----------CHHHHHHHHHHH
T ss_pred ---HHHHhCCC----------------c----------------------CcCCCCcCCcccCCCCHHHHHHHHHHHHHH
Confidence 55554411 0 278999999974 46899999999999999
Q ss_pred HHHHHhcCCCh--HHHHhhhCCCC
Q psy7542 670 LKEMFKFGPSR--NQVLAFLGVNS 691 (762)
Q Consensus 670 ~~~~~~~~~~~--~~~~~~~~~~~ 691 (762)
|+.+...+..+ ..+..||..+.
T Consensus 106 L~~i~~~p~l~~~~~~~~FL~~~~ 129 (366)
T 3dyt_A 106 MTRMCRHPVISESEVFQQFLNFRD 129 (366)
T ss_dssp HHHHHTCTTGGGSHHHHHHHHCSS
T ss_pred HHHHhCCHhhhCCcHHHHhhCCCc
Confidence 99999876655 78999999863
|
| >4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-10 Score=126.81 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=76.5
Q ss_pred hcCCCCCccccccceeeec---CCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhh
Q psy7542 513 RHPGPKENCISVSGYRLIE---CEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLK 589 (762)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (762)
|...+....|.|+..+... .-++|++|.|++.. ..|.|.||||||..||+
T Consensus 35 w~~~~~~~~i~V~dp~k~~~~~g~~~y~~Y~I~~~~--~~~~V~RRYsdF~~L~~------------------------- 87 (386)
T 4akv_A 35 WKANPHPFACSVEDPTKQTKFKGIKSYISYKLTPTH--AASPVYRRYKHFDWLYN------------------------- 87 (386)
T ss_dssp ECCCSSCCCEEEECC------------CCEEEEETT--SSSCEEECHHHHHHHHH-------------------------
T ss_pred eecCCCCeEEEEcCceEecCCCCCcCeEEEEEEEEe--CCeEEEcCHHHHHHHHH-------------------------
Confidence 4444445666777666553 23799999998864 46999999999999998
Q ss_pred hhHHHHhhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC-CCChhHHHHHHHHHHH
Q psy7542 590 QNRRQKKRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR-SNQPKVLDERRHLLEI 668 (762)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 668 (762)
++++.+. ....|.+|||++. +.+++++++||.+||.
T Consensus 88 ----~L~~~~p---------------------------------------~~~iP~lP~K~~~g~~~~~fie~Rr~~Le~ 124 (386)
T 4akv_A 88 ----RLLHKFT---------------------------------------VISVPHLPEKQATGRFEEDFIEKRKRRLIL 124 (386)
T ss_dssp ----HHHHHCS---------------------------------------SSCCCCCCCCC------CCTTTHHHHHHHH
T ss_pred ----HHHHhCC---------------------------------------CCCCCCCCCCcccCCCCHHHHHHHHHHHHH
Confidence 5555542 2378999999974 5689999999999999
Q ss_pred HHHHHHhcCCCh--HHHHhhhCCC
Q psy7542 669 YLKEMFKFGPSR--NQVLAFLGVN 690 (762)
Q Consensus 669 ~~~~~~~~~~~~--~~~~~~~~~~ 690 (762)
||+.+...+..+ ..+..||..+
T Consensus 125 fL~~i~~~p~l~~s~~~~~FL~~~ 148 (386)
T 4akv_A 125 WMDHMTSHPVLSQYEGFQHFLSCL 148 (386)
T ss_dssp HHHHHHTCTTGGGCHHHHHHHSCC
T ss_pred HHHHHhCCHhhhCCcHHHHHhCCC
Confidence 999999876655 7899999986
|
| >2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-09 Score=116.82 Aligned_cols=112 Identities=16% Similarity=0.266 Sum_probs=82.7
Q ss_pred ccccccceeeecCCCCeEEEEEEEEEc-CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhh
Q psy7542 520 NCISVSGYRLIECEKPYYVYVIHVRMF-QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRN 598 (762)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (762)
+.++|.+++...+...||+|.|.|... +..|.|.|||+||..||. ++++.
T Consensus 24 ~~v~I~~~~~~~~~~~~~~Y~i~v~~~~~~~~~v~RrYsdF~~Lh~-----------------------------~L~~~ 74 (341)
T 2dyb_A 24 ISANIADIEEKRGFTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQS-----------------------------KLEER 74 (341)
T ss_dssp EEEEEEEEEEEESSSEEEEEEEEEEETTSCEEEEEEEHHHHHHHHH-----------------------------HHHHH
T ss_pred EEEEECCeEEecCCCcEEEEEEEEEEcCCcEEEEEeehHHHHHHHH-----------------------------HHHHH
Confidence 456677776555555699999999954 568999999999999998 55554
Q ss_pred chhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHHhcCC
Q psy7542 599 CKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGP 678 (762)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (762)
+.. .-| ..+..-..|.+|+|++..+..+++++||+.||.||+.++...+
T Consensus 75 fp~-----------------------------e~g--~~~~~~~lp~lP~k~~~~~~~~~~e~R~~~Le~yl~~ll~lp~ 123 (341)
T 2dyb_A 75 FGP-----------------------------DSK--SSALAXTLPTLPAKVYVGVKQEIAEMRIPALNAYMKSLLSLPV 123 (341)
T ss_dssp TCC----------------------------------------CCCCCCCCCCCSCHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred Cch-----------------------------hhc--cccccccccCCCCccccCccHHHHHHHHHHHHHHHHHHHhcCc
Confidence 422 001 0111124688999998877888999999999999999998876
Q ss_pred ---ChHHHHhhhCCCC
Q psy7542 679 ---SRNQVLAFLGVNS 691 (762)
Q Consensus 679 ---~~~~~~~~~~~~~ 691 (762)
....|+.||....
T Consensus 124 ~i~~~~~v~~Ff~~~~ 139 (341)
T 2dyb_A 124 WVLMDEDVRIFFYQSP 139 (341)
T ss_dssp HHHTCHHHHHHHSCCH
T ss_pred hhhhhHHHHHHHhhcc
Confidence 2288899997643
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.4e-08 Score=109.94 Aligned_cols=171 Identities=10% Similarity=-0.027 Sum_probs=114.7
Q ss_pred CCCEEEEECCCChhHHHHHHHHHH-cCCCcEEEEEeCCCCCcch---------HHHHHHHhcChhHHHHHhhhhcccccC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILR-TCENVKIYILLRPKKNKNS---------RERLEEIFQSPLYEALKKEQSESAIFE 129 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~-~gp~v~V~~LvR~~~~~~~---------~eRl~~ll~~~~f~~l~~~~~~~~~~~ 129 (762)
.+|++|||||++.||.++++.|++ . |.+|+++.|....... .+.+.+.+ .....
T Consensus 46 ~gKvaLVTGas~GIG~AiA~~LA~g~--GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~--------------~~~G~ 109 (405)
T 3zu3_A 46 GPKRVLVIGASTGYGLAARITAAFGC--GADTLGVFFERPGEEGKPGTSGWYNSAAFHKFA--------------AQKGL 109 (405)
T ss_dssp CCSEEEEESCSSHHHHHHHHHHHHHH--CCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHH--------------HHTTC
T ss_pred CCCEEEEeCcchHHHHHHHHHHHHhc--CCEEEEEeCCchhhhhhcccccchhHHHHHHHH--------------HhcCC
Confidence 689999999999999999999999 8 7788888886543211 11111111 11235
Q ss_pred CeEEEEeecCCCCCCCCHHHHHhhc-------CCccEEEEccccc----------------Cc-----------------
Q psy7542 130 KVIPINGDVAVPDLGISAEDRQMLS-------ETIHIVYHIAATV----------------RF----------------- 169 (762)
Q Consensus 130 kV~~V~GDl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v----------------~f----------------- 169 (762)
++..+.+|+++++ ++++++ ..+|++||+||.. .+
T Consensus 110 ~a~~i~~Dvtd~~------~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~ 183 (405)
T 3zu3_A 110 YAKSINGDAFSDE------IKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIK 183 (405)
T ss_dssp CEEEEESCTTSHH------HHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEE
T ss_pred ceEEEECCCCCHH------HHHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccc
Confidence 6888999999875 444433 4689999999863 11
Q ss_pred --------cccHHHHHHHhHHHHH-HHHHHHHHcC---CccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhh
Q psy7542 170 --------DDYMQTYVFLNTRGTR-DMLNLSKQMI---HLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLS 237 (762)
Q Consensus 170 --------~~~l~~~~~~NV~GT~-~LLelA~~~~---~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~ 237 (762)
.+.++..+++|..++. .+++.+.... +-.++|.+||..+.... |.
T Consensus 184 ~~~i~~~t~ee~~~~v~Vn~~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~----------p~------------- 240 (405)
T 3zu3_A 184 ESVLQPATQSEIDSTVAVMGGEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITH----------DI------------- 240 (405)
T ss_dssp EEEECCCCHHHHHHHHHHHSSHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGT----------TT-------------
T ss_pred cccCCCCCHHHHHHHHHhhchhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcC----------CC-------------
Confidence 1346667888888876 5555543211 11479999998653211 00
Q ss_pred HHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----c-CCCEEEEeeeeeccC
Q psy7542 238 KNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----A-GMPCMILRPSIIIPI 288 (762)
Q Consensus 238 ~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~-glpv~IvRPs~V~G~ 288 (762)
.+...|+.||+..+.+.+..+. . |+++.++-||.|-.+
T Consensus 241 -------------~~~~aY~AaKaal~~ltrsLA~Ela~~~GIRVNaVaPG~i~T~ 283 (405)
T 3zu3_A 241 -------------YWNGSIGAAKKDLDQKVLAIRESLAAHGGGDARVSVLKAVVSQ 283 (405)
T ss_dssp -------------TTTSHHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEECCCCCCH
T ss_pred -------------ccchHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEEeCCCcCc
Confidence 0115799999988887766654 5 789999999976443
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-08 Score=112.64 Aligned_cols=171 Identities=11% Similarity=-0.035 Sum_probs=114.0
Q ss_pred CCCEEEEECCCChhHHHHHHHHHH-cCCCcEEEEEeCCCCCcch---------HHHHHHHhcChhHHHHHhhhhcccccC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILR-TCENVKIYILLRPKKNKNS---------RERLEEIFQSPLYEALKKEQSESAIFE 129 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~-~gp~v~V~~LvR~~~~~~~---------~eRl~~ll~~~~f~~l~~~~~~~~~~~ 129 (762)
.+|++|||||++.||.++++.|.+ . |.+|++..|....... .+.+.+.+ .....
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~--GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~--------------~~~G~ 123 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGF--GADTLGVFFEKPGTASKAGTAGWYNSAAFDKHA--------------KAAGL 123 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHH--CCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHH--------------HHTTC
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhC--CCEEEEEeCCchhhhhhhcccccchhHHHHHHH--------------HhcCC
Confidence 489999999999999999999999 8 7888888887543221 01111111 11235
Q ss_pred CeEEEEeecCCCCCCCCHHHHHhh-------c-CCccEEEEccccc----------------Cc----------------
Q psy7542 130 KVIPINGDVAVPDLGISAEDRQML-------S-ETIHIVYHIAATV----------------RF---------------- 169 (762)
Q Consensus 130 kV~~V~GDl~~~~LGLs~~~l~~l-------~-~~vDiViH~AA~v----------------~f---------------- 169 (762)
++..+.+|+++++ +++++ + ..+|++||+||.. .+
T Consensus 124 ~a~~i~~Dvtd~~------~v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~ 197 (422)
T 3s8m_A 124 YSKSINGDAFSDA------ARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTI 197 (422)
T ss_dssp CEEEEESCTTSHH------HHHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEE
T ss_pred cEEEEEecCCCHH------HHHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccc
Confidence 7888999999875 33332 3 5689999999862 11
Q ss_pred ---------cccHHHHHHHhHHHHH-HHHHHHHHcC---CccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhh
Q psy7542 170 ---------DDYMQTYVFLNTRGTR-DMLNLSKQMI---HLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELL 236 (762)
Q Consensus 170 ---------~~~l~~~~~~NV~GT~-~LLelA~~~~---~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l 236 (762)
.+.++..+++|..++. .+++.+.... +-.++|.+||..+.....
T Consensus 198 ~~~~~~~~t~e~~~~~v~Vn~~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~p----------------------- 254 (422)
T 3s8m_A 198 IQASIEPASAQEIEDTITVMGGQDWELWIDALEGAGVLADGARSVAFSYIGTEITWP----------------------- 254 (422)
T ss_dssp EEEEECCCCHHHHHHHHHHHSSHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGHH-----------------------
T ss_pred cccccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccCC-----------------------
Confidence 1234556777777665 5566554321 124799999986532110
Q ss_pred hHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEeeeeeccC
Q psy7542 237 SKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILRPSIIIPI 288 (762)
Q Consensus 237 ~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvRPs~V~G~ 288 (762)
. .+...|+.||+..+.+.+..+. .|+++..+-||.|-.+
T Consensus 255 ----------~---~~~~aY~ASKaAl~~lTrsLA~Ela~~GIRVNaVaPG~i~T~ 297 (422)
T 3s8m_A 255 ----------I---YWHGALGKAKVDLDRTAQRLNARLAKHGGGANVAVLKSVVTQ 297 (422)
T ss_dssp ----------H---HTSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCT
T ss_pred ----------C---ccchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEcCCCcCh
Confidence 0 0114799999988888877665 3899999999987554
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=98.86 E-value=9.8e-09 Score=119.85 Aligned_cols=212 Identities=15% Similarity=0.109 Sum_probs=135.5
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.++||+++||||++.||+.+++.|++. |.+|++..|... ++-.+++. ....++..+.+|
T Consensus 319 ~l~gkvalVTGas~GIG~a~A~~la~~--Ga~Vv~~~~~~~----~~~~~~i~---------------~~g~~~~~~~~D 377 (604)
T 2et6_A 319 SLKDKVVLITGAGAGLGKEYAKWFAKY--GAKVVVNDFKDA----TKTVDEIK---------------AAGGEAWPDQHD 377 (604)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEECSSCC----HHHHHHHH---------------HTTCEEEEECCC
T ss_pred ccCCCeEEEECcchHHHHHHHHHHHHC--CCEEEEEeCccH----HHHHHHHH---------------hcCCeEEEEEcC
Confidence 368999999999999999999999999 778888776321 11111211 112356677888
Q ss_pred c-CCCCCCCCHHHHHhhcCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEEeCC
Q psy7542 138 V-AVPDLGISAEDRQMLSETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVSTA 206 (762)
Q Consensus 138 l-~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vSSa 206 (762)
+ .+..- + .+...+....+|++||+||.... .+.++..+++|+.|+..+.+++... .+-.++|++||.
T Consensus 378 v~~~~~~-~-~~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ 455 (604)
T 2et6_A 378 VAKDSEA-I-IKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITST 455 (604)
T ss_dssp HHHHHHH-H-HHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred hHHHHHH-H-HHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCh
Confidence 8 43210 0 01112223579999999997532 1457789999999999998887542 233689999998
Q ss_pred cccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEee
Q psy7542 207 YCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILRP 282 (762)
Q Consensus 207 y~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvRP 282 (762)
.+.... |. ...|+.||+....+.+..+. .|+.+..|-|
T Consensus 456 ag~~~~----------~~----------------------------~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~P 497 (604)
T 2et6_A 456 SGIYGN----------FG----------------------------QANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAP 497 (604)
T ss_dssp HHHSCC----------TT----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred hhccCC----------CC----------------------------ChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcC
Confidence 543211 00 14799999988877776655 3899999999
Q ss_pred eeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 283 SIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 283 s~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
|. .+ ++. .. ... ....+....+|+|++++.++..... ..++++.+.++
T Consensus 498 G~--~T---~m~---~~------~~~--------------~~~~~~~~pe~vA~~v~~L~s~~~~---itG~~~~vdGG 545 (604)
T 2et6_A 498 HA--ET---AMT---LS------IMR--------------EQDKNLYHADQVAPLLVYLGTDDVP---VTGETFEIGGG 545 (604)
T ss_dssp CC--CC---CC--------------------------------CCSSCGGGTHHHHHHTTSTTCC---CCSCEEEEETT
T ss_pred CC--CC---ccc---cc------cCc--------------hhhccCCCHHHHHHHHHHHhCCccC---CCCcEEEECCC
Confidence 83 21 110 00 000 0011234678899998887754332 25778888766
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.6e-08 Score=109.01 Aligned_cols=172 Identities=8% Similarity=-0.094 Sum_probs=111.9
Q ss_pred cCCCEEEEECCCChhHHH--HHHHHHHcCCCcEEEEEeCCCCCcch---------HHHHHHHhcChhHHHHHhhhhcccc
Q psy7542 59 LEHKNIFITGASGFVGKV--LLEKILRTCENVKIYILLRPKKNKNS---------RERLEEIFQSPLYEALKKEQSESAI 127 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~--LvekLL~~gp~v~V~~LvR~~~~~~~---------~eRl~~ll~~~~f~~l~~~~~~~~~ 127 (762)
..||+||||||++.||.+ +++.|.+. |.+|+++.|....... .+.+++.. ...
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~--Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~ 121 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGP--EAHTIGVSYETGATDRRIGTAGWYNNIFFKEFA--------------KKK 121 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSS--CCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHH--------------HHT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhC--CCEEEEEecCcchhhhcccccccchHHHHHHHH--------------HHc
Confidence 478999999999999999 88888877 7788888887543210 12333221 112
Q ss_pred cCCeEEEEeecCCCCCCCCHHHHHhhc-------CCccEEEEccccc----------------Cc---------------
Q psy7542 128 FEKVIPINGDVAVPDLGISAEDRQMLS-------ETIHIVYHIAATV----------------RF--------------- 169 (762)
Q Consensus 128 ~~kV~~V~GDl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v----------------~f--------------- 169 (762)
..++..+.+|+++++ ++++++ ..+|++||+||.. .+
T Consensus 122 g~~~~~~~~Dvtd~~------~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~ 195 (418)
T 4eue_A 122 GLVAKNFIEDAFSNE------TKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDE 195 (418)
T ss_dssp TCCEEEEESCTTCHH------HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTE
T ss_pred CCcEEEEEeeCCCHH------HHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccc
Confidence 357889999999865 444333 3689999999863 01
Q ss_pred ----------cccHHHHHHHhHHHHH-HHHHHHHHcC---CccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHh
Q psy7542 170 ----------DDYMQTYVFLNTRGTR-DMLNLSKQMI---HLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAEL 235 (762)
Q Consensus 170 ----------~~~l~~~~~~NV~GT~-~LLelA~~~~---~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~ 235 (762)
.+.+...+++|..+.. .+++.+.... +-.++|.+||..+.... |.
T Consensus 196 ~~~~~~~~~t~e~~~~~~~vn~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~~----------p~----------- 254 (418)
T 4eue_A 196 ITLKKVSSASIEEIEETRKVMGGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRTY----------KI----------- 254 (418)
T ss_dssp EEEEEECBCCHHHHHHHHHHHSSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGT----------TT-----------
T ss_pred cccccccCCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCCC----------Cc-----------
Confidence 1234556677766665 4555544321 12478999987543211 11
Q ss_pred hhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHH----HH-cCCCEEEEeeeeeccC
Q psy7542 236 LSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEY----ME-AGMPCMILRPSIIIPI 288 (762)
Q Consensus 236 l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~----~~-~glpv~IvRPs~V~G~ 288 (762)
-+-..|+.||+..+.+.+.. +. .|+.+.++-||.|-.+
T Consensus 255 ---------------~~~~aY~ASKaAL~~ltrsLA~ELa~~~GIrVN~V~PG~v~T~ 297 (418)
T 4eue_A 255 ---------------YREGTIGIAKKDLEDKAKLINEKLNRVIGGRAFVSVNKALVTK 297 (418)
T ss_dssp ---------------TTTSHHHHHHHHHHHHHHHHHHHHHHHHSCEEEEEECCCCCCH
T ss_pred ---------------cccHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEECCcCcCh
Confidence 01157999999877666554 43 4799999999876443
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.5e-08 Score=116.48 Aligned_cols=232 Identities=13% Similarity=0.061 Sum_probs=139.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCc---chHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNK---NSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~---~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
++||+++||||++.||+.+++.|++. |.+|++..|..... ...+++++..+ .++.. ..++ .
T Consensus 6 l~gkvalVTGas~GIG~a~A~~la~~--Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~-----~i~~~------g~~~---~ 69 (604)
T 2et6_A 6 FKDKVVIITGAGGGLGKYYSLEFAKL--GAKVVVNDLGGALNGQGGNSKAADVVVD-----EIVKN------GGVA---V 69 (604)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEECC-----------CHHHHHHH-----HHHHT------TCEE---E
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHc--CCEEEEEeCCccccccccchHHHHHHHH-----HHHhc------CCeE---E
Confidence 57899999999999999999999999 77888887754100 00011221110 11111 1122 3
Q ss_pred eecCCCCCCCCHHH-HHh---hcCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 136 GDVAVPDLGISAED-RQM---LSETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 136 GDl~~~~LGLs~~~-l~~---l~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
.|+++.. +.+. +++ ....+|++||+||.... .+.++..+++|+.|+..+.+++... .+-.++|
T Consensus 70 ~d~~d~~---~~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IV 146 (604)
T 2et6_A 70 ADYNNVL---DGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIV 146 (604)
T ss_dssp EECCCTT---CHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred EEcCCHH---HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEE
Confidence 5777654 1111 222 23579999999997532 2457789999999999998887531 1336899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+.... | ....|+.||+..+.+.+..+. .|+.+
T Consensus 147 nisS~ag~~~~----------~----------------------------~~~~Y~asKaal~~lt~~la~El~~~gIrV 188 (604)
T 2et6_A 147 NTSSPAGLYGN----------F----------------------------GQANYASAKSALLGFAETLAKEGAKYNIKA 188 (604)
T ss_dssp EECCHHHHHCC----------T----------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECCHHHcCCC----------C----------------------------CchHHHHHHHHHHHHHHHHHHHhCccCeEE
Confidence 99997542211 0 014799999988888777655 38999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
..|.|+.. .+ +.... . ..........+++|.+++.++... . ...++++.
T Consensus 189 n~v~Pg~~-----T~-------------m~~~~----~------~~~~~~~~~pe~vA~~v~~L~s~~-~--~itG~~~~ 237 (604)
T 2et6_A 189 NAIAPLAR-----SR-------------MTESI----M------PPPMLEKLGPEKVAPLVLYLSSAE-N--ELTGQFFE 237 (604)
T ss_dssp EEEEECCC-----CH-------------HHHTT----S------CHHHHTTCSHHHHHHHHHHHTSSS-C--CCCSCEEE
T ss_pred EEEccCCc-----Cc-------------ccccc----C------ChhhhccCCHHHHHHHHHHHhCCc-c--cCCCCEEE
Confidence 99999621 11 10000 0 000112357889999998887654 2 12456666
Q ss_pred ecCC----------------CCCcccHHHHHHHHHHh
Q psy7542 358 LTAN----------------KDFQITWYDIIENGKDI 378 (762)
Q Consensus 358 i~s~----------------~~~piT~~el~~~i~~~ 378 (762)
+.++ .....+..++.+.+.+.
T Consensus 238 vdgG~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 274 (604)
T 2et6_A 238 VAAGFYAQIRWERSGGVLFKPDQSFTAEVVAKRFSEI 274 (604)
T ss_dssp EETTEEEEEEEEECCCEECCSSTTCCHHHHHHHHHHH
T ss_pred ECCCeEEEEEEEeccceecCCCCCCCHHHHHHHHHHh
Confidence 5443 11345667777666554
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.2e-08 Score=133.08 Aligned_cols=169 Identities=18% Similarity=0.230 Sum_probs=119.6
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchH-HHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSR-ERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~-eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
|-.+|+++||||+|.||..+++.|++. |. .|+++.|+....... +.++++ .....++.++.
T Consensus 1881 ~~~~k~~lITGgs~GIG~aia~~la~~--Ga~~vvl~~R~~~~~~~~~~~~~~l---------------~~~g~~v~~~~ 1943 (2512)
T 2vz8_A 1881 CPPHKSYVITGGLGGFGLQLAQWLRLR--GAQKLVLTSRSGIRTGYQARQVREW---------------RRQGVQVLVST 1943 (2512)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHT--TCCEEEEECSSCCCSHHHHHHHHHH---------------HHTTCEEEEEC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHHHHC--CCCEEEEEeCCCcchHHHHHHHHHH---------------HhCCCEEEEEe
Confidence 447899999999999999999999998 77 588888875433211 222221 11135788899
Q ss_pred eecCCCCCCCCHHHHHhhc------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH-cCCccEEE
Q psy7542 136 GDVAVPDLGISAEDRQMLS------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ-MIHLQLFV 201 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l~------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~-~~~lk~fV 201 (762)
+|+++++ ++++++ ..+|+|||+|+.... .+.++..+++|+.|+.++.+++.. ++...+||
T Consensus 1944 ~Dvsd~~------~v~~~~~~~~~~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV 2017 (2512)
T 2vz8_A 1944 SNASSLD------GARSLITEATQLGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFV 2017 (2512)
T ss_dssp CCSSSHH------HHHHHHHHHHHHSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEE
T ss_pred cCCCCHH------HHHHHHHHHHhcCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEE
Confidence 9999865 444433 368999999997532 245667889999999999888765 34567999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEe
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILR 281 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvR 281 (762)
++||..+..... ....|+.+|+..+.+.+.....|+|...+-
T Consensus 2018 ~iSS~ag~~g~~--------------------------------------g~~~Y~aaKaal~~l~~~rr~~Gl~~~a~~ 2059 (2512)
T 2vz8_A 2018 IFSSVSCGRGNA--------------------------------------GQANYGFANSAMERICEKRRHDGLPGLAVQ 2059 (2512)
T ss_dssp EECCHHHHTTCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHTTSCCCEEE
T ss_pred EecchhhcCCCC--------------------------------------CcHHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 999985532210 014799999999999997776799999988
Q ss_pred eeeecc
Q psy7542 282 PSIIIP 287 (762)
Q Consensus 282 Ps~V~G 287 (762)
.+.+.+
T Consensus 2060 ~g~~~~ 2065 (2512)
T 2vz8_A 2060 WGAIGD 2065 (2512)
T ss_dssp ECCBCT
T ss_pred ccCcCC
Confidence 886543
|
| >3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.3e-07 Score=91.73 Aligned_cols=103 Identities=13% Similarity=0.190 Sum_probs=74.8
Q ss_pred ccccccceeeecCCCCeEEEEEEEEEc-----CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHH
Q psy7542 520 NCISVSGYRLIECEKPYYVYVIHVRMF-----QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQ 594 (762)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (762)
..|.|+..... +.|++|.|+++.. ...|.|.+|||||..||+ +
T Consensus 12 l~i~V~dp~~~---~~~v~Y~I~t~t~~p~f~~~~~~V~RRysdF~~L~~-----------------------------~ 59 (161)
T 3hpc_X 12 LQIDIPDALSE---RDKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHD-----------------------------T 59 (161)
T ss_dssp EEEEEEEEEEE---TTEEEEEEEEEECCTTSSSSEEEEEECHHHHHHHHH-----------------------------H
T ss_pred EEEEECCCeEe---cCCEEEEEEEEeCCcccCCCcceEEecHHHHHHHHH-----------------------------H
Confidence 34455554433 2399999999864 468999999999999998 4
Q ss_pred HhhhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCC---------------C-----
Q psy7542 595 KKRNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRS---------------N----- 654 (762)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~----- 654 (762)
+.++..+ +..-.|.+|+|.+-. .
T Consensus 60 L~~~~~~-------------------------------------p~~iiPplP~K~~~~~~~~K~~~~g~~~~~~~~e~~ 102 (161)
T 3hpc_X 60 LTETTDY-------------------------------------AGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEF 102 (161)
T ss_dssp HHHCGGG-------------------------------------TTSCCCCCCCCCCCHHHHHHHHHHHHTGGGSCHHHH
T ss_pred HHhhccC-------------------------------------CccccCCCCCcccccchhhhhhcccccccccchhHh
Confidence 4442211 122689999998742 1
Q ss_pred -------ChhHHHHHH---HHHHHHHHHHHhcCCCh--HHHHhhhCCCC
Q psy7542 655 -------QPKVLDERR---HLLEIYLKEMFKFGPSR--NQVLAFLGVNS 691 (762)
Q Consensus 655 -------~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 691 (762)
++++|++|| .+||.||+.+...+-.+ ..+..||..+.
T Consensus 103 ~~~r~~~~~efie~Rrkrr~~Le~FL~ri~~HP~L~~d~~~~~FL~~~~ 151 (161)
T 3hpc_X 103 AKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQ 151 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHCCS
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHHHHHHcCCCcccCcHHHhhcCCCc
Confidence 367888754 56999999999887776 88999998763
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.2e-07 Score=99.81 Aligned_cols=122 Identities=12% Similarity=0.065 Sum_probs=79.2
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++|+||||+||+|++++..|+..+...++.+++++.. .+|++.... .+.... +.....+.+..+| .
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~----~~~~~~~~~-----dl~~~~--~~~~~~~~i~~~~---d 66 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS----INKLEGLRE-----DIYDAL--AGTRSDANIYVES---D 66 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG----HHHHHHHHH-----HHHHHH--TTSCCCCEEEEEE---T
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCc----hhhhHHHHH-----HHHHhH--HhcCCCeEEEeCC---c
Confidence 5799999999999999999998732226777776321 122221000 000000 1111233333332 0
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCC
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA 206 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSa 206 (762)
++.+.++++|+|||+|+..+- .....+.+..|+.+++++++.+++. . +++|+++|-
T Consensus 67 -------~l~~al~gaD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~-~~~vlv~SN 123 (313)
T 1hye_A 67 -------ENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI-C-DTKIFVITN 123 (313)
T ss_dssp -------TCGGGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-C-CCEEEECSS
T ss_pred -------chHHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-C-CeEEEEecC
Confidence 145567899999999997653 3344568999999999999999998 5 888888874
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.7e-07 Score=101.33 Aligned_cols=175 Identities=12% Similarity=0.079 Sum_probs=107.3
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCC----C-cEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEE
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCE----N-VKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPI 134 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp----~-v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V 134 (762)
+.++|+||||+||+|++++..|+..+. . .+|.++++... ..++|++... ..+. +.....
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~--~~~~~~~g~~-----~dl~------~~~~~~--- 67 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNE--KAQKALQGVM-----MEID------DCAFPL--- 67 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCH--HHHHHHHHHH-----HHHH------TTTCTT---
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCc--cccccchhhH-----HHHh------hhcccc---
Confidence 357899999999999999999988731 1 26777766410 0012222100 0000 000011
Q ss_pred EeecCCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCcc-EEEEEeCC-cccCC
Q psy7542 135 NGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQ-LFVYVSTA-YCHPK 211 (762)
Q Consensus 135 ~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk-~fV~vSSa-y~~~~ 211 (762)
.+|+.... ++.+.++++|+|||+|+..+- .....+.+..|+.+++++++.+.+..+.+ +||++|.- ...
T Consensus 68 ~~~i~~~~------~~~~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~-- 139 (329)
T 1b8p_A 68 LAGMTAHA------DPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTN-- 139 (329)
T ss_dssp EEEEEEES------SHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH--
T ss_pred cCcEEEec------CcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHH--
Confidence 23554333 567778999999999997653 34455788999999999999999873234 78887741 100
Q ss_pred CcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCC--chhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccC
Q psy7542 212 EKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFP--NGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPI 288 (762)
Q Consensus 212 ~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~p--n~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~ 288 (762)
..+..+..+++| +.++.++.-..++....++. |++..-++...|+|.
T Consensus 140 ------------------------------t~~~~~~~~~~p~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~ 189 (329)
T 1b8p_A 140 ------------------------------AYIAMKSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGN 189 (329)
T ss_dssp ------------------------------HHHHHHTCTTSCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBC
T ss_pred ------------------------------HHHHHHHcCCCCHHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEec
Confidence 000001110111 35777877777877777776 888777776666774
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.44 E-value=8.2e-07 Score=79.69 Aligned_cols=94 Identities=15% Similarity=0.061 Sum_probs=70.6
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCC-cEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCEN-VKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~-v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.+++|+|+|+ |++|+.+++.|++. + .+|+++.|.. ++++.+. ..++..+.+|+
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~--g~~~v~~~~r~~------~~~~~~~-----------------~~~~~~~~~d~ 57 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTS--SNYSVTVADHDL------AALAVLN-----------------RMGVATKQVDA 57 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHC--SSEEEEEEESCH------HHHHHHH-----------------TTTCEEEECCT
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhC--CCceEEEEeCCH------HHHHHHH-----------------hCCCcEEEecC
Confidence 3578999999 99999999999998 5 5899999853 2333221 13567888999
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV 201 (762)
.+++ ++.++++++|+|||+++.. .+..+++.|.+. +++.|.
T Consensus 58 ~~~~------~~~~~~~~~d~vi~~~~~~---------------~~~~~~~~~~~~-g~~~~~ 98 (118)
T 3ic5_A 58 KDEA------GLAKALGGFDAVISAAPFF---------------LTPIIAKAAKAA-GAHYFD 98 (118)
T ss_dssp TCHH------HHHHHTTTCSEEEECSCGG---------------GHHHHHHHHHHT-TCEEEC
T ss_pred CCHH------HHHHHHcCCCEEEECCCch---------------hhHHHHHHHHHh-CCCEEE
Confidence 8754 7888889999999998531 135788888886 665543
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-06 Score=94.52 Aligned_cols=119 Identities=11% Similarity=-0.016 Sum_probs=80.8
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
+.++|+||||+||+|..++..|+..+...+|.++++... +....++.. .....++..+.+
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~----~~~~~dL~~-------------~~~~~~v~~~~~--- 66 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA----PGVTADISH-------------MDTGAVVRGFLG--- 66 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH----HHHHHHHHT-------------SCSSCEEEEEES---
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc----HhHHHHhhc-------------ccccceEEEEeC---
Confidence 357899999999999999999988732137888887542 111112211 000012222111
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCC
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA 206 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSa 206 (762)
..++.+.++++|+|||+|+...- .....+....|+.+++++++.+.+. +.+++|+++|-
T Consensus 67 -------t~d~~~al~gaDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~-~p~~~viv~SN 126 (326)
T 1smk_A 67 -------QQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKC-CPRAIVNLISN 126 (326)
T ss_dssp -------HHHHHHHHTTCSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCS
T ss_pred -------CCCHHHHcCCCCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEECC
Confidence 23677888999999999997643 2333467899999999999999987 56788888874
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=5.8e-06 Score=110.48 Aligned_cols=239 Identities=10% Similarity=0.047 Sum_probs=137.7
Q ss_pred cCCCEEEEECCCCh-hHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGF-VGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGF-LG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
++||+++||||++. ||..+++.|++. |.+|++..|..... ..+.++++. .+. .....++..+.+|
T Consensus 2134 l~gKvaLVTGAs~GsIG~AiA~~La~~--GA~Vvi~~r~~~~~-~~~~~~~l~---------~~l--~~~G~~~~~v~~D 2199 (3089)
T 3zen_D 2134 XXDEVAVVTGASKGSIAASVVGQLLDG--GATVIATTSRLDDD-RLAFYKQLY---------RDH--ARFDATLWVVPAN 2199 (3089)
T ss_dssp CCCCEEEEESCCTTSHHHHHHHHHHHT--TCEEEEEESCCSHH-HHHHHHHHH---------HHH--CCTTCEEEEEECC
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHHC--CCEEEEEeCChhhh-hhHHHHHHH---------HHH--hhcCCeEEEEEec
Confidence 78999999999999 999999999999 78889988865321 111122221 111 1223568889999
Q ss_pred cCCCCCCCCHHHHHhh----cC-------CccEEEEcccc----cCc------------cccHHHHHHHhHHHHHHHHHH
Q psy7542 138 VAVPDLGISAEDRQML----SE-------TIHIVYHIAAT----VRF------------DDYMQTYVFLNTRGTRDMLNL 190 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l----~~-------~vDiViH~AA~----v~f------------~~~l~~~~~~NV~GT~~LLel 190 (762)
+++++ +++.+ .+ .+|++||+||. ..+ +..++..+++|+.++..+++.
T Consensus 2200 vtd~~------~v~~lv~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~ 2273 (3089)
T 3zen_D 2200 MASYS------DIDKLVEWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISG 2273 (3089)
T ss_dssp TTCHH------HHHHHHHHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHH
T ss_pred CCCHH------HHHHHHHHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876 45443 22 48999999997 111 122344589999999988887
Q ss_pred HHHc---CCc---cEEEE-EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHH
Q psy7542 191 SKQM---IHL---QLFVY-VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLC 263 (762)
Q Consensus 191 A~~~---~~l---k~fV~-vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~a 263 (762)
+... .+. ..++. .|+..+.. +....|+.||+..
T Consensus 2274 ~~~~m~~~~~g~~~~ii~~~ss~~g~~----------------------------------------g~~~aYsASKaAl 2313 (3089)
T 3zen_D 2274 LSKIGAERDIASRLHVVLPGSPNRGMF----------------------------------------GGDGAYGEAKSAL 2313 (3089)
T ss_dssp HHHHHHHTTCCCCEEEEEEECSSTTSC----------------------------------------SSCSSHHHHGGGH
T ss_pred HHHHHHHcCCCceeEEEEECCcccccC----------------------------------------CCchHHHHHHHHH
Confidence 7542 111 12222 22211100 0014799999999
Q ss_pred HHHHHHHHHc-----CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHH
Q psy7542 264 EGVVTEYMEA-----GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGV 338 (762)
Q Consensus 264 E~lv~~~~~~-----glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~ai 338 (762)
+.+.+..+.. ++.++.+-||.|-++... + . . ... ........ ......+|+|+++
T Consensus 2314 ~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~---~---~-~--~~~-~~~~~~~~----------~r~~~PeEIA~av 2373 (3089)
T 3zen_D 2314 DALENRWSAEKSWAERVSLAHALIGWTKGTGLM---G---Q-N--DAI-VSAVEEAG----------VTTYTTDEMAAML 2373 (3089)
T ss_dssp HHHHHHHHHCSTTTTTEEEEEEECCCEECSTTT---T---T-T--TTT-HHHHGGGS----------CBCEEHHHHHHHH
T ss_pred HHHHHHHHhccccCCCeEEEEEeecccCCCccc---c---c-c--hhH-HHHHHhcC----------CCCCCHHHHHHHH
Confidence 9988887763 466777777766533110 0 0 0 001 11111000 0112568999998
Q ss_pred HHHhhcccCCC-CCCceEEEecCCCCC-cccHHHHHHHHHH
Q psy7542 339 LLSTWNFLSNP-GNTMRVINLTANKDF-QITWYDIIENGKD 377 (762)
Q Consensus 339 i~a~~~~~~~~-~~~~~iyNi~s~~~~-piT~~el~~~i~~ 377 (762)
+.++....... ....-...++++-.. ...+.++...+++
T Consensus 2374 lfLaS~~a~~~~~~~p~~vdl~GG~~~~~~~~~~~~~~~~~ 2414 (3089)
T 3zen_D 2374 LDLCTVETKVAAAGAPVKVDLTGGLGDIKIDMAELAAKARE 2414 (3089)
T ss_dssp HHTTSHHHHHHHHHSCEEEECSBSCSSCCCCHHHHTHHHHH
T ss_pred HHHhChhhhhHhcCCeEEEEcCCCcCcCCCCHHHHHHHHHH
Confidence 88765332100 001123344455323 3678888776543
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.30 E-value=4.2e-06 Score=89.31 Aligned_cols=119 Identities=12% Similarity=-0.002 Sum_probs=79.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++|+||||+||+|..++..|+..+...++.+++++.. .++++... ..+.... . ...++.+..+|
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~----~~~~~~~~-----~dl~~~~--~-~~~~~~v~~~~---- 64 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDK----EDDTVGQA-----ADTNHGI--A-YDSNTRVRQGG---- 64 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGG----HHHHHHHH-----HHHHHHH--T-TTCCCEEEECC----
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCC----hhhHHHHH-----HHHHHHH--h-hCCCcEEEeCC----
Confidence 5799999999999999999988732226877776211 12332110 0111111 1 12344444322
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCC
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA 206 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSa 206 (762)
.+.++++|+|||+|+...- .....+....|+.+++++++.+++. +.+++|+++|-
T Consensus 65 ---------~~a~~~aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SN 120 (303)
T 1o6z_A 65 ---------YEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSN 120 (303)
T ss_dssp ---------GGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCS
T ss_pred ---------HHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 2346899999999997653 2344567899999999999999997 67888888764
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=5.3e-06 Score=87.58 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=61.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++|++|+||||+|++|++++..|++. +.+|++..|.. ++.+++.+ .+.. ..++.++.+|+
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~--G~~V~i~~R~~------~~~~~l~~-----~~~~-------~~~~~~~~~D~ 176 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGE--GAEVVLCGRKL------DKAQAAAD-----SVNK-------RFKVNVTAAET 176 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSH------HHHHHHHH-----HHHH-------HHTCCCEEEEC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--cCEEEEEECCH------HHHHHHHH-----HHHh-------cCCcEEEEecC
Confidence 57899999999999999999999998 67789999863 23333221 0100 02456778999
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAAT 166 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~ 166 (762)
++++ ++.++++++|+|||+|+.
T Consensus 177 ~~~~------~~~~~~~~~DvlVn~ag~ 198 (287)
T 1lu9_A 177 ADDA------SRAEAVKGAHFVFTAGAI 198 (287)
T ss_dssp CSHH------HHHHHTTTCSEEEECCCT
T ss_pred CCHH------HHHHHHHhCCEEEECCCc
Confidence 8754 788888999999999975
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.98 E-value=1.6e-05 Score=89.58 Aligned_cols=108 Identities=15% Similarity=0.206 Sum_probs=73.8
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++++|+||| +|++|+++++.|++. +.+|++..|.. ++.+++.+ ...++..+.+|++
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~--G~~V~v~~R~~------~~a~~la~---------------~~~~~~~~~~Dv~ 57 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDS--GIKVTVACRTL------ESAKKLSA---------------GVQHSTPISLDVN 57 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTT--TCEEEEEESSH------HHHHHTTT---------------TCTTEEEEECCTT
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhC--cCEEEEEECCH------HHHHHHHH---------------hcCCceEEEeecC
Confidence 578999998 899999999999986 67888888853 23333211 1134678889998
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHH--hH-------HHHHHHHHHHHHcCCcc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFL--NT-------RGTRDMLNLSKQMIHLQ 198 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~--NV-------~GT~~LLelA~~~~~lk 198 (762)
+.+ ++.++++++|+|||||+......-...+++. |+ .++.+++++|++. +++
T Consensus 58 d~~------~l~~~l~~~DvVIn~a~~~~~~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~a-Gv~ 118 (450)
T 1ff9_A 58 DDA------ALDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDA-GIT 118 (450)
T ss_dssp CHH------HHHHHHTTSSEEEECCC--CHHHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHT-TCE
T ss_pred CHH------HHHHHHcCCcEEEECCccccchHHHHHHHhCCCeEEEeecccHHHHHHHHHHHHC-CCe
Confidence 754 6778888999999999863221111222332 32 4688999999987 543
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.68 E-value=7.5e-05 Score=76.41 Aligned_cols=81 Identities=14% Similarity=0.201 Sum_probs=54.4
Q ss_pred CCCEEEEECC----------------CChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhh
Q psy7542 60 EHKNIFITGA----------------SGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQS 123 (762)
Q Consensus 60 ~gk~VLVTGA----------------TGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~ 123 (762)
+||+|||||| ||.+|.++++.++++ |.+|+++.|+..-.
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~--Ga~V~lv~~~~~~~----------------------- 56 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSA--GYEVCLITTKRALK----------------------- 56 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHT--TCEEEEEECTTSCC-----------------------
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHC--CCEEEEEeCCcccc-----------------------
Confidence 5899999999 999999999999999 77889999875321
Q ss_pred cccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCcc
Q psy7542 124 ESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFD 170 (762)
Q Consensus 124 ~~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~ 170 (762)
+.....+..+..+-.+.- .+.+...+.++|++||+||...|.
T Consensus 57 -~~~~~~~~~~~v~s~~em----~~~v~~~~~~~Dili~aAAvsD~~ 98 (232)
T 2gk4_A 57 -PEPHPNLSIREITNTKDL----LIEMQERVQDYQVLIHSMAVSDYT 98 (232)
T ss_dssp -CCCCTTEEEEECCSHHHH----HHHHHHHGGGCSEEEECSBCCSEE
T ss_pred -ccCCCCeEEEEHhHHHHH----HHHHHHhcCCCCEEEEcCcccccc
Confidence 111124444433311110 112333456799999999987764
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00035 Score=76.46 Aligned_cols=90 Identities=11% Similarity=0.013 Sum_probs=59.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHH-HcCCCcEEEEEeCCCCCcch------HHHHHHHhcChhHHHHHhhhhcccccCCe
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKIL-RTCENVKIYILLRPKKNKNS------RERLEEIFQSPLYEALKKEQSESAIFEKV 131 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL-~~gp~v~V~~LvR~~~~~~~------~eRl~~ll~~~~f~~l~~~~~~~~~~~kV 131 (762)
..+|+||||||+..+|.+....|. +. +..|+++.|.+..... ...... +...- .....+.
T Consensus 48 ~~pK~vLVtGaSsGiGlA~AialAf~~--GA~vi~v~~~~~~~~~~~atag~~~~~a------~~~~i-----~~~G~~a 114 (401)
T 4ggo_A 48 KAPKNVLVLGCSNGYGLASRITAAFGY--GAATIGVSFEKAGSETKYGTPGWYNNLA------FDEAA-----KREGLYS 114 (401)
T ss_dssp CCCCEEEEESCSSHHHHHHHHHHHHHH--CCEEEEEECCCCCCSSSCCCHHHHHHHH------HHHHH-----HHHTCCE
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhhC--CCCEEEEecCCcccccccccccchhHHH------HHHHH-----HHcCCCc
Confidence 367999999999999999999887 55 6667777775543211 001100 11111 1224678
Q ss_pred EEEEeecCCCCCCCCHHHHHhhc-------CCccEEEEccccc
Q psy7542 132 IPINGDVAVPDLGISAEDRQMLS-------ETIHIVYHIAATV 167 (762)
Q Consensus 132 ~~V~GDl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v 167 (762)
..+.+|+++++ ..++++ .++|++||++|..
T Consensus 115 ~~i~~Dv~d~e------~i~~vi~~i~~~~G~IDiLVhS~A~~ 151 (401)
T 4ggo_A 115 VTIDGDAFSDE------IKAQVIEEAKKKGIKFDLIVYSLASP 151 (401)
T ss_dssp EEEESCTTSHH------HHHHHHHHHHHTTCCEEEEEECCCCS
T ss_pred eeEeCCCCCHH------HHHHHHHHHHHhcCCCCEEEEecccc
Confidence 89999999865 444443 3689999999965
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00016 Score=66.78 Aligned_cols=101 Identities=11% Similarity=0.105 Sum_probs=65.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++++|+|+|+ |.+|+.+++.|.+. +.+|+++.|.. ++++.+. ......+.+|.+
T Consensus 5 ~~~~v~I~G~-G~iG~~~a~~l~~~--g~~v~~~d~~~------~~~~~~~-----------------~~~~~~~~~d~~ 58 (144)
T 2hmt_A 5 KNKQFAVIGL-GRFGGSIVKELHRM--GHEVLAVDINE------EKVNAYA-----------------SYATHAVIANAT 58 (144)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHT--TCCCEEEESCH------HHHHTTT-----------------TTCSEEEECCTT
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHC--CCEEEEEeCCH------HHHHHHH-----------------HhCCEEEEeCCC
Confidence 5678999998 99999999999998 55677777742 2222210 123456788887
Q ss_pred CCCCCCCHHHHHhh-cCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCC
Q psy7542 140 VPDLGISAEDRQML-SETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA 206 (762)
Q Consensus 140 ~~~LGLs~~~l~~l-~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSa 206 (762)
+++ .+.++ .+++|+||++++.. .+.|. .+.+.|++. +.++++..++.
T Consensus 59 ~~~------~l~~~~~~~~d~vi~~~~~~---------~~~~~----~~~~~~~~~-~~~~ii~~~~~ 106 (144)
T 2hmt_A 59 EEN------ELLSLGIRNFEYVIVAIGAN---------IQAST----LTTLLLKEL-DIPNIWVKAQN 106 (144)
T ss_dssp CHH------HHHTTTGGGCSEEEECCCSC---------HHHHH----HHHHHHHHT-TCSEEEEECCS
T ss_pred CHH------HHHhcCCCCCCEEEECCCCc---------hHHHH----HHHHHHHHc-CCCeEEEEeCC
Confidence 643 56654 67899999998641 12232 355667776 55666655543
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=8.9e-05 Score=80.12 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=72.6
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCc--E-----EEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEE
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENV--K-----IYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIP 133 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v--~-----V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~ 133 (762)
.++|.||||+|++|++++..|+.. ++ + |.++++......++....++... . ..-+.-
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~--~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~-------------~-~~~~~~ 66 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNG--SVFGKDQPIILVLLDITPMMGVLDGVLMELQDC-------------A-LPLLKD 66 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTT--TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHT-------------C-CTTEEE
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC--CCccccCCCEEEEEeCCCccccchhhHhhhHhh-------------h-hcccCC
Confidence 468999999999999999999876 33 3 88887753111111111121110 0 011111
Q ss_pred EEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCcc--EEEEEe
Q psy7542 134 INGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQ--LFVYVS 204 (762)
Q Consensus 134 V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk--~fV~vS 204 (762)
+.+ . . +..+.++++|+|||+||..+- .++-.+.++.|+..++++++.+++. +.+ .++.+|
T Consensus 67 ~~~--~--~------~~~~~~~daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~-~~~~~~vivvs 129 (333)
T 5mdh_A 67 VIA--T--D------KEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKY-AKKSVKVIVVG 129 (333)
T ss_dssp EEE--E--S------CHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHH-SCTTCEEEECS
T ss_pred EEE--c--C------CcHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEcC
Confidence 111 1 1 234557899999999997643 3344567899999999999999987 333 355444
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00079 Score=72.04 Aligned_cols=114 Identities=12% Similarity=0.020 Sum_probs=73.7
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|.|+||+|++|..++..|+..+-..+|.++++.. .+....++.+ .....++....+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~----~~~~a~dL~~-------------~~~~~~l~~~~~----- 58 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH----TPGVAADLSH-------------IETRATVKGYLG----- 58 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS----HHHHHHHHTT-------------SSSSCEEEEEES-----
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc----cHHHHHHHhc-------------cCcCceEEEecC-----
Confidence 579999999999999999988773213899999865 1121112211 000112222211
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCcc-EEEEE
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQ-LFVYV 203 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk-~fV~v 203 (762)
..++++.++++|+||++|+...- ...-.+.+..|+..++.+++.+.+. ... .++.+
T Consensus 59 -----t~d~~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~ 116 (314)
T 1mld_A 59 -----PEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICII 116 (314)
T ss_dssp -----GGGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEEC
T ss_pred -----CCCHHHHhCCCCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEE
Confidence 12577778999999999997643 2333456789999999999988876 233 44443
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00032 Score=79.24 Aligned_cols=81 Identities=14% Similarity=0.254 Sum_probs=58.3
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
..+++++|+|+|| |++|+.++..|++. ++++|++..|.. ++.+++.+ . .++..+.+
T Consensus 19 ~~l~~k~VlIiGA-GgiG~aia~~L~~~-~g~~V~v~~R~~------~ka~~la~-------------~---~~~~~~~~ 74 (467)
T 2axq_A 19 GRHMGKNVLLLGS-GFVAQPVIDTLAAN-DDINVTVACRTL------ANAQALAK-------------P---SGSKAISL 74 (467)
T ss_dssp ----CEEEEEECC-STTHHHHHHHHHTS-TTEEEEEEESSH------HHHHHHHG-------------G---GTCEEEEC
T ss_pred cCCCCCEEEEECC-hHHHHHHHHHHHhC-CCCeEEEEECCH------HHHHHHHH-------------h---cCCcEEEE
Confidence 3357889999997 99999999999987 356899999963 33333321 1 24567788
Q ss_pred ecCCCCCCCCHHHHHhhcCCccEEEEccccc
Q psy7542 137 DVAVPDLGISAEDRQMLSETIHIVYHIAATV 167 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~~vDiViH~AA~v 167 (762)
|+.+.+ ++.++++++|+|||+++..
T Consensus 75 D~~d~~------~l~~~l~~~DvVIn~tp~~ 99 (467)
T 2axq_A 75 DVTDDS------ALDKVLADNDVVISLIPYT 99 (467)
T ss_dssp CTTCHH------HHHHHHHTSSEEEECSCGG
T ss_pred ecCCHH------HHHHHHcCCCEEEECCchh
Confidence 887654 6777778999999998853
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0018 Score=59.31 Aligned_cols=98 Identities=17% Similarity=0.121 Sum_probs=62.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+|+|+|+ |++|..+++.|.+. +.+|.++.|.. ++++.+.+ ...+..+.+|..
T Consensus 3 ~~m~i~IiG~-G~iG~~~a~~L~~~--g~~v~~~d~~~------~~~~~~~~----------------~~~~~~~~~d~~ 57 (140)
T 1lss_A 3 HGMYIIIAGI-GRVGYTLAKSLSEK--GHDIVLIDIDK------DICKKASA----------------EIDALVINGDCT 57 (140)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH----------------HCSSEEEESCTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhC--CCeEEEEECCH------HHHHHHHH----------------hcCcEEEEcCCC
Confidence 3578999986 99999999999988 67788888753 22222210 014567788877
Q ss_pred CCCCCCCHHHHHhh-cCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 140 VPDLGISAEDRQML-SETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 140 ~~~LGLs~~~l~~l-~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
+++ .+... ++++|+||++.... ..|. .+.++++.. +..++|..
T Consensus 58 ~~~------~l~~~~~~~~d~vi~~~~~~----------~~~~----~~~~~~~~~-~~~~ii~~ 101 (140)
T 1lss_A 58 KIK------TLEDAGIEDADMYIAVTGKE----------EVNL----MSSLLAKSY-GINKTIAR 101 (140)
T ss_dssp SHH------HHHHTTTTTCSEEEECCSCH----------HHHH----HHHHHHHHT-TCCCEEEE
T ss_pred CHH------HHHHcCcccCCEEEEeeCCc----------hHHH----HHHHHHHHc-CCCEEEEE
Confidence 643 44433 57899999996431 1222 455666666 44565543
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0017 Score=60.32 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=54.2
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+++|+|+|+ |.+|+.+++.|.+. +++|+++.|.+ ++++++. ...+.++.||.+
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~--g~~V~~id~~~------~~~~~~~-----------------~~~~~~~~gd~~ 58 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAA--GKKVLAVDKSK------EKIELLE-----------------DEGFDAVIADPT 58 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHT--TCCEEEEESCH------HHHHHHH-----------------HTTCEEEECCTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC--CCeEEEEECCH------HHHHHHH-----------------HCCCcEEECCCC
Confidence 4578999997 99999999999998 66778888853 3333321 135678899998
Q ss_pred CCCCCCCHHHHHhh-cCCccEEEEccc
Q psy7542 140 VPDLGISAEDRQML-SETIHIVYHIAA 165 (762)
Q Consensus 140 ~~~LGLs~~~l~~l-~~~vDiViH~AA 165 (762)
+++ .+.++ ++++|+||.+.+
T Consensus 59 ~~~------~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 59 DES------FYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp CHH------HHHHSCCTTCSEEEECCS
T ss_pred CHH------HHHhCCcccCCEEEEecC
Confidence 865 45554 467999997765
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00055 Score=69.81 Aligned_cols=79 Identities=22% Similarity=0.206 Sum_probs=52.8
Q ss_pred cCCCEEEEECC----------------CChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhh
Q psy7542 59 LEHKNIFITGA----------------SGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQ 122 (762)
Q Consensus 59 ~~gk~VLVTGA----------------TGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~ 122 (762)
++||+|||||| ||.+|.++++.|++. |.+|+++.|+..-.
T Consensus 6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~--Ga~V~l~~~~~~l~---------------------- 61 (226)
T 1u7z_A 6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARR--GANVTLVSGPVSLP---------------------- 61 (226)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHT--TCEEEEEECSCCCC----------------------
T ss_pred CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHC--CCEEEEEECCcccc----------------------
Confidence 58999999999 799999999999999 77788877764210
Q ss_pred hcccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCc
Q psy7542 123 SESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRF 169 (762)
Q Consensus 123 ~~~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f 169 (762)
. ...+. ..|+.+..- + .+...+.+..+|++||+||...+
T Consensus 62 --~--~~g~~--~~dv~~~~~-~-~~~v~~~~~~~Dili~~Aav~d~ 100 (226)
T 1u7z_A 62 --T--PPFVK--RVDVMTALE-M-EAAVNASVQQQNIFIGCAAVADY 100 (226)
T ss_dssp --C--CTTEE--EEECCSHHH-H-HHHHHHHGGGCSEEEECCBCCSE
T ss_pred --c--CCCCe--EEccCcHHH-H-HHHHHHhcCCCCEEEECCcccCC
Confidence 0 11222 346655320 0 01122234579999999997654
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00027 Score=74.19 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=29.3
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
+.++|.|+|+||.+|+.+++.+++. +++++.+..+.
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~-~~~elva~~d~ 39 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALAL-EGVQLGAALER 39 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHS-TTEECCCEECC
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEec
Confidence 4478999999999999999999877 67877755443
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00095 Score=73.92 Aligned_cols=94 Identities=21% Similarity=0.249 Sum_probs=65.9
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc--EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV--KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v--~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+|+|| |++|+.+++.|++.+ ++ +|.+..|.. ++++++.+ .+. .....++..+.+|++
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~g-~~~~~V~v~~r~~------~~~~~la~-----~l~-----~~~~~~~~~~~~D~~ 63 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMNR-EVFSHITLASRTL------SKCQEIAQ-----SIK-----AKGYGEIDITTVDAD 63 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTCT-TTCCEEEEEESCH------HHHHHHHH-----HHH-----HTTCCCCEEEECCTT
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCceEEEEEECCH------HHHHHHHH-----Hhh-----hhcCCceEEEEecCC
Confidence 58999998 999999999999883 44 888888863 23333211 000 001136888999998
Q ss_pred CCCCCCCHHHHHhhcCC--ccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 140 VPDLGISAEDRQMLSET--IHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~--vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
+++ ++++++++ +|+|||+|+... ...++++|.+.
T Consensus 64 d~~------~l~~~l~~~~~DvVin~ag~~~---------------~~~v~~a~l~~ 99 (405)
T 4ina_A 64 SIE------ELVALINEVKPQIVLNIALPYQ---------------DLTIMEACLRT 99 (405)
T ss_dssp CHH------HHHHHHHHHCCSEEEECSCGGG---------------HHHHHHHHHHH
T ss_pred CHH------HHHHHHHhhCCCEEEECCCccc---------------ChHHHHHHHHh
Confidence 755 78888877 899999997421 13577788776
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0073 Score=56.91 Aligned_cols=78 Identities=5% Similarity=0.128 Sum_probs=55.0
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+++|+|+|+ |.+|+.+++.|.+. +++|.++.|... ++.+.+. .....++.++.||.+
T Consensus 2 ~~~~vlI~G~-G~vG~~la~~L~~~--g~~V~vid~~~~-----~~~~~~~--------------~~~~~~~~~i~gd~~ 59 (153)
T 1id1_A 2 RKDHFIVCGH-SILAINTILQLNQR--GQNVTVISNLPE-----DDIKQLE--------------QRLGDNADVIPGDSN 59 (153)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHHT--TCCEEEEECCCH-----HHHHHHH--------------HHHCTTCEEEESCTT
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHC--CCCEEEEECCCh-----HHHHHHH--------------HhhcCCCeEEEcCCC
Confidence 4567999995 99999999999998 667788887521 2222211 001246889999998
Q ss_pred CCCCCCCHHHHHhh-cCCccEEEEccc
Q psy7542 140 VPDLGISAEDRQML-SETIHIVYHIAA 165 (762)
Q Consensus 140 ~~~LGLs~~~l~~l-~~~vDiViH~AA 165 (762)
+++ .+.++ ++++|.||-+..
T Consensus 60 ~~~------~l~~a~i~~ad~vi~~~~ 80 (153)
T 1id1_A 60 DSS------VLKKAGIDRCRAILALSD 80 (153)
T ss_dssp SHH------HHHHHTTTTCSEEEECSS
T ss_pred CHH------HHHHcChhhCCEEEEecC
Confidence 765 56665 789999997654
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0014 Score=71.26 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=62.0
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
+.|+|+|.|| |++|+.+++.|.+. ..|.+.+|.. ++++++ .+.+..+..|+.
T Consensus 15 ~~mkilvlGa-G~vG~~~~~~L~~~---~~v~~~~~~~------~~~~~~------------------~~~~~~~~~d~~ 66 (365)
T 3abi_A 15 RHMKVLILGA-GNIGRAIAWDLKDE---FDVYIGDVNN------ENLEKV------------------KEFATPLKVDAS 66 (365)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHTTT---SEEEEEESCH------HHHHHH------------------TTTSEEEECCTT
T ss_pred CccEEEEECC-CHHHHHHHHHHhcC---CCeEEEEcCH------HHHHHH------------------hccCCcEEEecC
Confidence 3468999998 99999999888654 3566677742 333332 235667788988
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcC
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMI 195 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~ 195 (762)
+.+ ++.++++++|+||+++... + ...++++|.+.+
T Consensus 67 d~~------~l~~~~~~~DvVi~~~p~~-----~----------~~~v~~~~~~~g 101 (365)
T 3abi_A 67 NFD------KLVEVMKEFELVIGALPGF-----L----------GFKSIKAAIKSK 101 (365)
T ss_dssp CHH------HHHHHHTTCSEEEECCCGG-----G----------HHHHHHHHHHHT
T ss_pred CHH------HHHHHHhCCCEEEEecCCc-----c----------cchHHHHHHhcC
Confidence 755 7899999999999998642 1 135788898873
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0091 Score=56.44 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=53.2
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
+...+++|+|.|+ |.+|..+++.|.+. +.+|+++.|.... ++.+ . ....+..+.+
T Consensus 15 ~~~~~~~v~IiG~-G~iG~~la~~L~~~--g~~V~vid~~~~~------~~~~---------------~-~~~g~~~~~~ 69 (155)
T 2g1u_A 15 KKQKSKYIVIFGC-GRLGSLIANLASSS--GHSVVVVDKNEYA------FHRL---------------N-SEFSGFTVVG 69 (155)
T ss_dssp --CCCCEEEEECC-SHHHHHHHHHHHHT--TCEEEEEESCGGG------GGGS---------------C-TTCCSEEEES
T ss_pred cccCCCcEEEECC-CHHHHHHHHHHHhC--CCeEEEEECCHHH------HHHH---------------H-hcCCCcEEEe
Confidence 3446789999995 99999999999988 6788888886422 1110 0 0124567778
Q ss_pred ecCCCCCCCCHHHHHhh-cCCccEEEEccc
Q psy7542 137 DVAVPDLGISAEDRQML-SETIHIVYHIAA 165 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l-~~~vDiViH~AA 165 (762)
|..+++ .+.+. ++++|+||.+..
T Consensus 70 d~~~~~------~l~~~~~~~ad~Vi~~~~ 93 (155)
T 2g1u_A 70 DAAEFE------TLKECGMEKADMVFAFTN 93 (155)
T ss_dssp CTTSHH------HHHTTTGGGCSEEEECSS
T ss_pred cCCCHH------HHHHcCcccCCEEEEEeC
Confidence 876543 45554 567999998865
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0098 Score=64.33 Aligned_cols=111 Identities=12% Similarity=0.003 Sum_probs=70.5
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
+|+++++|.|+||+|++|+.++..|+..+..-+|.++++.... ++....++... .....++.+ ..
T Consensus 4 ~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k--~~g~a~DL~~~------------~~~~~~i~~-t~ 68 (343)
T 3fi9_A 4 SYLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVG--LEGVAEEIRHC------------GFEGLNLTF-TS 68 (343)
T ss_dssp CCSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHH--HHHHHHHHHHH------------CCTTCCCEE-ES
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchh--HHHHHHhhhhC------------cCCCCceEE-cC
Confidence 6788999999999999999999999988422278888874211 11111111110 000112221 11
Q ss_pred ecCCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 137 DVAVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
++.+.++++|+||.+||..+- .+.-.+.+..|+...+.+.+.+.+.
T Consensus 69 ------------d~~~al~dADvVvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~ 115 (343)
T 3fi9_A 69 ------------DIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSY 115 (343)
T ss_dssp ------------CHHHHHTTEEEEEECCC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------CHHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 355667899999999997643 3344567899999999999999876
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.015 Score=56.94 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=31.2
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
.|++|+||||+|.+|..+++.+... +.+|++..|.
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~ 72 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGS 72 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESS
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHc--CCEEEEEeCC
Confidence 6899999999999999999988887 6788888885
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.086 Score=50.87 Aligned_cols=74 Identities=18% Similarity=0.181 Sum_probs=52.9
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHc-CCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRT-CENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~-gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.+++|+|.| .|.+|..+++.|.+. + ++|+++.|.. ++++.+. ...+.++.||.
T Consensus 38 ~~~~v~IiG-~G~~G~~~a~~L~~~~g--~~V~vid~~~------~~~~~~~-----------------~~g~~~~~gd~ 91 (183)
T 3c85_A 38 GHAQVLILG-MGRIGTGAYDELRARYG--KISLGIEIRE------EAAQQHR-----------------SEGRNVISGDA 91 (183)
T ss_dssp TTCSEEEEC-CSHHHHHHHHHHHHHHC--SCEEEEESCH------HHHHHHH-----------------HTTCCEEECCT
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHhccC--CeEEEEECCH------HHHHHHH-----------------HCCCCEEEcCC
Confidence 567899998 599999999999886 5 4567777753 3333221 12466788998
Q ss_pred CCCCCCCCHHHHHhh--cCCccEEEEccc
Q psy7542 139 AVPDLGISAEDRQML--SETIHIVYHIAA 165 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l--~~~vDiViH~AA 165 (762)
++++ .+.++ ++++|+||.+..
T Consensus 92 ~~~~------~l~~~~~~~~ad~vi~~~~ 114 (183)
T 3c85_A 92 TDPD------FWERILDTGHVKLVLLAMP 114 (183)
T ss_dssp TCHH------HHHTBCSCCCCCEEEECCS
T ss_pred CCHH------HHHhccCCCCCCEEEEeCC
Confidence 7654 56666 778999998754
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.12 Score=55.00 Aligned_cols=106 Identities=11% Similarity=0.056 Sum_probs=68.6
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
|+|.|+||+|.+|..++..|....+-. ++.++++.++ ......++.. .....++..+.+ ++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~---~~G~a~Dl~~-------------~~~~~~v~~~~~--~~ 62 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV---TPGVAVDLSH-------------IPTAVKIKGFSG--ED 62 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTT---HHHHHHHHHT-------------SCSSEEEEEECS--SC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCC---chhHHHHhhC-------------CCCCceEEEecC--CC
Confidence 579999999999999998887752223 8888888652 1121222211 001112222211 11
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
....++++|+||-+|+..+- .+.-.+.++.|+.-.+.+.+.+.+.
T Consensus 63 ---------~~~~~~~aDivii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~ 108 (312)
T 3hhp_A 63 ---------ATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT 108 (312)
T ss_dssp ---------CHHHHTTCSEEEECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------cHHHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 13445899999999997653 3455678999999999999988775
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.033 Score=59.28 Aligned_cols=38 Identities=21% Similarity=0.422 Sum_probs=32.7
Q ss_pred cCCCE-EEEE-CCC-----------------ChhHHHHHHHHHHcCCCcEEEEEeCCCC
Q psy7542 59 LEHKN-IFIT-GAS-----------------GFVGKVLLEKILRTCENVKIYILLRPKK 98 (762)
Q Consensus 59 ~~gk~-VLVT-GAT-----------------GFLG~~LvekLL~~gp~v~V~~LvR~~~ 98 (762)
++|++ |||| ||| |-+|.++++.++++ |..|+++.|+..
T Consensus 34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~--Ga~V~lv~g~~s 90 (313)
T 1p9o_A 34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAA--GYGVLFLYRARS 90 (313)
T ss_dssp HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHT--TCEEEEEEETTS
T ss_pred hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHC--CCEEEEEecCCC
Confidence 47888 9999 667 99999999999999 778889988754
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.031 Score=59.67 Aligned_cols=83 Identities=16% Similarity=0.095 Sum_probs=53.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
++|++|+|+|| |.+|+.++..|.+. ++ +|++..|..+.. +|.+++.+ .+... ..+.+...+
T Consensus 152 l~gk~~lVlGa-GG~g~aia~~L~~~--Ga~~V~i~nR~~~~~---~~a~~la~-----~~~~~-------~~~~~~~~~ 213 (315)
T 3tnl_A 152 IIGKKMTICGA-GGAATAICIQAALD--GVKEISIFNRKDDFY---ANAEKTVE-----KINSK-------TDCKAQLFD 213 (315)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHT--TCSEEEEEECSSTTH---HHHHHHHH-----HHHHH-------SSCEEEEEE
T ss_pred ccCCEEEEECC-ChHHHHHHHHHHHC--CCCEEEEEECCCchH---HHHHHHHH-----Hhhhh-------cCCceEEec
Confidence 47899999997 89999999999998 78 899999974322 33333221 01100 112233334
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEccc
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAA 165 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA 165 (762)
+.+. +++.+.+.++|+||++-.
T Consensus 214 ~~~~------~~l~~~l~~aDiIINaTp 235 (315)
T 3tnl_A 214 IEDH------EQLRKEIAESVIFTNATG 235 (315)
T ss_dssp TTCH------HHHHHHHHTCSEEEECSS
T ss_pred cchH------HHHHhhhcCCCEEEECcc
Confidence 4432 256677788999998854
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.11 Score=55.57 Aligned_cols=114 Identities=15% Similarity=0.120 Sum_probs=73.2
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc--EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV--KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v--~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+.++|.|+|| |.+|..++..|+.. +. +|.++++.. ++++.... .+.... +.....+.+..+|
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~--~~~~~l~l~D~~~------~k~~g~a~-----DL~~~~--~~~~~~v~i~~~~ 67 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQ--GITDELVVIDVNK------EKAMGDVM-----DLNHGK--AFAPQPVKTSYGT 67 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHH--TCCSEEEEECSCH------HHHHHHHH-----HHHHTG--GGSSSCCEEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhC--CCCceEEEEecch------HHHHHHHH-----HHHhcc--ccccCCeEEEeCc
Confidence 4578999996 99999999999988 44 888888742 22221000 000001 2222344544443
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
. +.++++|+||.+|+..+- .+.-.+.+..|+.-.+.+.+.+.+. ....++.+
T Consensus 68 ~-------------~a~~~aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlv 120 (326)
T 3pqe_A 68 Y-------------EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLV 120 (326)
T ss_dssp G-------------GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEE
T ss_pred H-------------HHhCCCCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEE
Confidence 2 246799999999997643 3445567899999999999998876 33444443
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.025 Score=56.45 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=52.4
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|+|+|+ |.+|+.+++.|.+. ++.|.++.+.. ++++++.+ ..++.++.||.+++
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~--g~~v~vid~~~------~~~~~l~~----------------~~~~~~i~gd~~~~ 55 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSR--KYGVVIINKDR------ELCEEFAK----------------KLKATIIHGDGSHK 55 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHT--TCCEEEEESCH------HHHHHHHH----------------HSSSEEEESCTTSH
T ss_pred CEEEEECC-CHHHHHHHHHHHhC--CCeEEEEECCH------HHHHHHHH----------------HcCCeEEEcCCCCH
Confidence 57999996 99999999999998 66778888753 33333211 12567899999886
Q ss_pred CCCCCHHHHHhh-cCCccEEEEcc
Q psy7542 142 DLGISAEDRQML-SETIHIVYHIA 164 (762)
Q Consensus 142 ~LGLs~~~l~~l-~~~vDiViH~A 164 (762)
+ .+.++ ++++|+||-+.
T Consensus 56 ~------~l~~a~i~~ad~vi~~~ 73 (218)
T 3l4b_C 56 E------ILRDAEVSKNDVVVILT 73 (218)
T ss_dssp H------HHHHHTCCTTCEEEECC
T ss_pred H------HHHhcCcccCCEEEEec
Confidence 5 56654 67899999554
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.025 Score=58.20 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=33.8
Q ss_pred hhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCC
Q psy7542 55 ISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPK 97 (762)
Q Consensus 55 i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~ 97 (762)
-++-+++++|+|.|+ |-+|+.+++.|.+. |+ +|.++++..
T Consensus 25 ~q~~l~~~~VlVvG~-Gg~G~~va~~La~~--Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 25 GQEALKDSRVLIVGL-GGLGCAASQYLASA--GVGNLTLLDFDT 65 (249)
T ss_dssp HHHHHHHCEEEEECC-SHHHHHHHHHHHHH--TCSEEEEECCCB
T ss_pred HHHHHhCCeEEEEee-CHHHHHHHHHHHHc--CCCeEEEEcCCC
Confidence 345567899999995 88999999999999 78 899888875
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.053 Score=57.64 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=31.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
-.|++||||||+|.+|..+++.+... +.+|++..|+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~ 179 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGS 179 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCC
Confidence 36899999999999999999988877 6788998885
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.19 Score=54.18 Aligned_cols=112 Identities=17% Similarity=0.115 Sum_probs=69.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHc---CCCc--EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEE
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRT---CENV--KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIP 133 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~---gp~v--~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~ 133 (762)
++.-+|.||||+|.||..|+-.|... +++. .+.+++..+. ...++... .| +.. .........
T Consensus 22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~----~~~~~Gva----~D-L~~----~~~~~~~~~ 88 (345)
T 4h7p_A 22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPA----LKALAGVE----AE-LED----CAFPLLDKV 88 (345)
T ss_dssp CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGG----HHHHHHHH----HH-HHH----TTCTTEEEE
T ss_pred CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCc----cccchhhh----hh-hhh----cCccCCCcE
Confidence 35568999999999999999877654 1122 5777776432 12222110 00 000 001111222
Q ss_pred EEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 134 INGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 134 V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
+.++ +..+.++++|+||=+|+..+- .+.-.+.++.|..-.+.+.+...+.
T Consensus 89 ~~~~-----------~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~ 139 (345)
T 4h7p_A 89 VVTA-----------DPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAV 139 (345)
T ss_dssp EEES-----------CHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcC-----------ChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhh
Confidence 2221 234567899999999997653 4556789999999999999988764
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=95.10 E-value=0.1 Score=55.85 Aligned_cols=113 Identities=12% Similarity=0.098 Sum_probs=62.2
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc--EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV--KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v--~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
++++|.|+|| |.+|..++..|+.. ++ +|.++++.. ++++.... .+.... + ....+.+..+|
T Consensus 8 ~~~kV~ViGa-G~vG~~~a~~l~~~--~~~~el~l~D~~~------~k~~g~a~-----DL~~~~--~-~~~~~~i~~~~ 70 (326)
T 3vku_A 8 DHQKVILVGD-GAVGSSYAYAMVLQ--GIAQEIGIVDIFK------DKTKGDAI-----DLEDAL--P-FTSPKKIYSAE 70 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHH--TCCSEEEEECSCH------HHHHHHHH-----HHHTTG--G-GSCCCEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhC--CCCCeEEEEeCCh------HHHHHHHh-----hHhhhh--h-hcCCcEEEECc
Confidence 5679999996 99999999999988 44 888888742 22221100 000000 1 11344444333
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
. +.++++|+||.+|+..+- .+.-.+.++.|+.-.+.+.+.+.+. ....++.+
T Consensus 71 ~-------------~a~~~aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~ilv 123 (326)
T 3vku_A 71 Y-------------SDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLV 123 (326)
T ss_dssp G-------------GGGTTCSEEEECCCCC----------------CHHHHHHHHHTT-TCCSEEEE
T ss_pred H-------------HHhcCCCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhc-CCceEEEE
Confidence 1 246899999999997543 2334467888998889999888875 33444433
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.06 Score=58.00 Aligned_cols=35 Identities=31% Similarity=0.454 Sum_probs=29.5
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
++|+|.||||.+|..|++.|.++ |++++..+.+.+
T Consensus 5 ~kv~IvGatG~vG~~l~~~L~~~-p~~el~~l~s~~ 39 (337)
T 3dr3_A 5 LNTLIVGASGYAGAELVTYVNRH-PHMNITALTVSA 39 (337)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHC-TTEEEEEEEEET
T ss_pred eEEEEECCCChHHHHHHHHHHhC-CCCcEEEEEecC
Confidence 58999999999999999988886 788777775543
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.017 Score=62.67 Aligned_cols=36 Identities=25% Similarity=0.451 Sum_probs=30.2
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCC-----CcEEEEEeCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCE-----NVKIYILLRP 96 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp-----~v~V~~LvR~ 96 (762)
+.++|+|.||||.+|+.|++.|+++ + .++|.++.+.
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~-~~~~~~~~ei~~l~s~ 48 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGH-PAYADGRLRIGALTAA 48 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTC-HHHHTTSEEEEEEEES
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcC-CCCCCccEEEEEEECC
Confidence 4478999999999999999999987 5 5688887654
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.037 Score=57.02 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=32.6
Q ss_pred hhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCC
Q psy7542 54 RISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRP 96 (762)
Q Consensus 54 ~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~ 96 (762)
.-++-+++++|+|.|+ |.+|+.+++.|.+. |+ +|.++++.
T Consensus 21 ~~q~~l~~~~VlvvG~-GglG~~va~~La~~--Gvg~i~lvD~d 61 (251)
T 1zud_1 21 DGQQKLLDSQVLIIGL-GGLGTPAALYLAGA--GVGTLVLADDD 61 (251)
T ss_dssp HHHHHHHTCEEEEECC-STTHHHHHHHHHHT--TCSEEEEECCC
T ss_pred HHHHHHhcCcEEEEcc-CHHHHHHHHHHHHc--CCCeEEEEeCC
Confidence 3455678899999997 55999999999998 78 88888664
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.042 Score=58.95 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=32.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
-.|++||||||+|.+|..+++.+... +.+|++..|+.
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~V~~~~~~~ 204 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAM--GYRVLGIDGGE 204 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECST
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCcEEEEcCCH
Confidence 36899999999999999999888777 67899998864
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.042 Score=59.83 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=53.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
..+++|+|+|+ |-+|..+++.|... +.+|++.+|.. ++++.+.+ ..... +.+|.
T Consensus 164 l~~~~V~ViGa-G~iG~~~a~~l~~~--Ga~V~~~d~~~------~~~~~~~~--------------~~g~~---~~~~~ 217 (369)
T 2eez_A 164 VAPASVVILGG-GTVGTNAAKIALGM--GAQVTILDVNH------KRLQYLDD--------------VFGGR---VITLT 217 (369)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH--------------HTTTS---EEEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhC--CCEEEEEECCH------HHHHHHHH--------------hcCce---EEEec
Confidence 56899999999 99999999999887 66889998853 23322210 01112 34555
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEccccc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATV 167 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v 167 (762)
.+. +++.+++.++|+||++++..
T Consensus 218 ~~~------~~l~~~~~~~DvVi~~~g~~ 240 (369)
T 2eez_A 218 ATE------ANIKKSVQHADLLIGAVLVP 240 (369)
T ss_dssp CCH------HHHHHHHHHCSEEEECCC--
T ss_pred CCH------HHHHHHHhCCCEEEECCCCC
Confidence 543 36777778999999998753
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.065 Score=56.78 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=31.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
-.|++||||||+|.+|..++..+... +.+|++..|+
T Consensus 139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~V~~~~~~ 174 (327)
T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGT 174 (327)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCC
Confidence 35899999999999999999988887 6789999885
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.058 Score=57.39 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=31.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
-.|++||||||+|.+|..+++.+... +.+|++..|+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~Vi~~~~~ 179 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARHL--GATVIGTVST 179 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESS
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 36899999999999999999988877 6789999886
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.079 Score=49.05 Aligned_cols=72 Identities=21% Similarity=0.319 Sum_probs=52.2
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++|+|.|+ |.+|..+++.|.+. ++.|.++.+.. ++++++. ...+.++.||.+++
T Consensus 8 ~~viIiG~-G~~G~~la~~L~~~--g~~v~vid~~~------~~~~~~~-----------------~~g~~~i~gd~~~~ 61 (140)
T 3fwz_A 8 NHALLVGY-GRVGSLLGEKLLAS--DIPLVVIETSR------TRVDELR-----------------ERGVRAVLGNAANE 61 (140)
T ss_dssp SCEEEECC-SHHHHHHHHHHHHT--TCCEEEEESCH------HHHHHHH-----------------HTTCEEEESCTTSH
T ss_pred CCEEEECc-CHHHHHHHHHHHHC--CCCEEEEECCH------HHHHHHH-----------------HcCCCEEECCCCCH
Confidence 46899995 99999999999988 67788888853 3333321 13677899999886
Q ss_pred CCCCCHHHHHhh-cCCccEEEEccc
Q psy7542 142 DLGISAEDRQML-SETIHIVYHIAA 165 (762)
Q Consensus 142 ~LGLs~~~l~~l-~~~vDiViH~AA 165 (762)
+ .+.++ ++++|+||-+..
T Consensus 62 ~------~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 62 E------IMQLAHLECAKWLILTIP 80 (140)
T ss_dssp H------HHHHTTGGGCSEEEECCS
T ss_pred H------HHHhcCcccCCEEEEECC
Confidence 5 45543 467899986643
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.045 Score=59.19 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=30.5
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
.++|.|.||||.+|+.+++.|+++ |+++|..+.+..
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~-p~~elv~v~s~~ 39 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSH-PYLEVKQVTSRR 39 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTC-TTEEEEEEBCST
T ss_pred CCEEEEECCCCHHHHHHHHHHHcC-CCcEEEEEECch
Confidence 368999999999999999999877 677888877643
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.39 E-value=0.1 Score=56.14 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=31.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
-.|++||||||+|.+|..++..+... +.+|++..|+.
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~ 205 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTE 205 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSH
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCh
Confidence 35899999999999999999888777 67899998853
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.3 Score=51.47 Aligned_cols=113 Identities=17% Similarity=0.082 Sum_probs=70.6
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHH-HhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEE-IFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~-ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
|+|.|+|| |.+|..++..|+..+ -+ +|.+.++.. ++++. .++ +.... +.......+...+
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~-~~~~v~L~D~~~------~~~~g~~~d------l~~~~--~~~~~~~~i~~t~-- 62 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNL-DVDEIALVDIAE------DLAVGEAMD------LAHAA--AGIDKYPKIVGGA-- 62 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHS-CCSEEEEECSSH------HHHHHHHHH------HHHHH--HTTTCCCEEEEES--
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CCCeEEEEECCh------HHHHHHHHH------HHhhh--hhcCCCCEEEEeC--
Confidence 57999998 999999999998883 23 889998854 22221 000 00000 1111222222221
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
+ .+.++++|+||-+|+..+- ...-.+.+..|+.-.+.+.+.+.+. ....++.+
T Consensus 63 ---------d-~~a~~~aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iiv 116 (294)
T 1oju_A 63 ---------D-YSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILV 116 (294)
T ss_dssp ---------C-GGGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEE
T ss_pred ---------C-HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEE
Confidence 2 3356899999999987643 3445578889999999999988876 33444433
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.24 Score=55.59 Aligned_cols=100 Identities=15% Similarity=0.203 Sum_probs=66.9
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCc---EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENV---KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v---~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.++|+|.| .|-||+.++..|.++ +++ +|.+.+..+......++ .++.++..+
T Consensus 13 ~~rVlIIG-aGgVG~~va~lla~~-~dv~~~~I~vaD~~~~~~~~~~~-----------------------~g~~~~~~~ 67 (480)
T 2ph5_A 13 KNRFVILG-FGCVGQALMPLIFEK-FDIKPSQVTIIAAEGTKVDVAQQ-----------------------YGVSFKLQQ 67 (480)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHH-BCCCGGGEEEEESSCCSCCHHHH-----------------------HTCEEEECC
T ss_pred CCCEEEEC-cCHHHHHHHHHHHhC-CCCceeEEEEeccchhhhhHHhh-----------------------cCCceeEEe
Confidence 35699999 899999999999998 455 78888776554332111 135666667
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCc
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAY 207 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay 207 (762)
++..+. .+.+..++++.|+||+++-.. . ...++++|.++ + +.|++|+-
T Consensus 68 Vdadnv---~~~l~aLl~~~DvVIN~s~~~---~------------~l~Im~aclea-G---v~YlDTa~ 115 (480)
T 2ph5_A 68 ITPQNY---LEVIGSTLEENDFLIDVSIGI---S------------SLALIILCNQK-G---ALYINAAT 115 (480)
T ss_dssp CCTTTH---HHHTGGGCCTTCEEEECCSSS---C------------HHHHHHHHHHH-T---CEEEESSC
T ss_pred ccchhH---HHHHHHHhcCCCEEEECCccc---c------------CHHHHHHHHHc-C---CCEEECCC
Confidence 766541 123556777779999865321 1 24688999998 3 46888873
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.14 Score=54.06 Aligned_cols=47 Identities=23% Similarity=0.291 Sum_probs=33.3
Q ss_pred hhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHH
Q psy7542 56 SATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRER 105 (762)
Q Consensus 56 ~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eR 105 (762)
++-+++++|+|.| .|-+|+.+++.|.+. |+ +|.++++..-..+...|
T Consensus 31 q~kL~~~~VlVvG-aGGlGs~va~~La~a--GVG~i~lvD~D~Ve~sNL~R 78 (292)
T 3h8v_A 31 YEKIRTFAVAIVG-VGGVGSVTAEMLTRC--GIGKLLLFDYDKVELANMNR 78 (292)
T ss_dssp -CGGGGCEEEEEC-CSHHHHHHHHHHHHH--TCSEEEEECCCBC-------
T ss_pred HHHHhCCeEEEEC-cCHHHHHHHHHHHHc--CCCEEEEECCCccChhhccc
Confidence 3456788999999 588999999999999 78 89988876543333333
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.11 Score=55.89 Aligned_cols=36 Identities=8% Similarity=0.024 Sum_probs=31.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
-.|++||||||+|.+|..++..+... +.+|++..|+
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~ 196 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGS 196 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESC
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCC
Confidence 35899999999999999999888877 6789999885
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.14 Score=55.10 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=27.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHcC-CCcEEEEEe
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTC-ENVKIYILL 94 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~g-p~v~V~~Lv 94 (762)
++|+|.||||.+|+.|++.|++++ |.++|.++.
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~ 40 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLA 40 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 579999999999999999998654 444776665
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.13 E-value=0.15 Score=55.23 Aligned_cols=121 Identities=12% Similarity=0.055 Sum_probs=69.3
Q ss_pred hhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHH--------HHhcChhHHHHHhhhhccc
Q psy7542 56 SATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE--------EIFQSPLYEALKKEQSESA 126 (762)
Q Consensus 56 ~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~--------~ll~~~~f~~l~~~~~~~~ 126 (762)
++-+++++|+|.|+ |-+|+.+++.|.+. |+ +|.++++..-..+...|.- +......-++++..+
T Consensus 113 q~~L~~~~VlvvG~-GglGs~va~~La~a--Gvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n---- 185 (353)
T 3h5n_A 113 QDKLKNAKVVILGC-GGIGNHVSVILATS--GIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRN---- 185 (353)
T ss_dssp HHHHHTCEEEEECC-SHHHHHHHHHHHHH--TCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC----
T ss_pred HHHHhCCeEEEECC-CHHHHHHHHHHHhC--CCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHC----
Confidence 56678899999996 77999999999999 78 8998887642211111100 000000011111111
Q ss_pred ccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 127 IFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 127 ~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
..-+++.+..++.... ++.. ++++|+||.+.-. +.. .-..+-++|.+. + +.+|+.+.
T Consensus 186 p~v~v~~~~~~i~~~~------~~~~-~~~~DlVvd~~Dn--~~~-----------~r~~ln~~c~~~-~-~p~i~~~~ 242 (353)
T 3h5n_A 186 SEISVSEIALNINDYT------DLHK-VPEADIWVVSADH--PFN-----------LINWVNKYCVRA-N-QPYINAGY 242 (353)
T ss_dssp TTSEEEEEECCCCSGG------GGGG-SCCCSEEEECCCC--STT-----------HHHHHHHHHHHT-T-CCEEEEEE
T ss_pred CCCeEEEeecccCchh------hhhH-hccCCEEEEecCC--hHH-----------HHHHHHHHHHHh-C-CCEEEEEE
Confidence 1235667777776543 2455 7899999987532 110 112344677775 4 45666654
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.13 Score=55.12 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=31.5
Q ss_pred cCC--CEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCC
Q psy7542 59 LEH--KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRP 96 (762)
Q Consensus 59 ~~g--k~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~ 96 (762)
-.| ++||||||+|.+|..++..+... +. +|++..|.
T Consensus 157 ~~g~~~~vlI~GasggiG~~~~~~a~~~--Ga~~Vi~~~~~ 195 (357)
T 2zb4_A 157 TAGSNKTMVVSGAAGACGSVAGQIGHFL--GCSRVVGICGT 195 (357)
T ss_dssp CTTSCCEEEESSTTBHHHHHHHHHHHHT--TCSEEEEEESC
T ss_pred CCCCccEEEEECCCcHHHHHHHHHHHHC--CCCeEEEEeCC
Confidence 357 99999999999999999888777 77 89999885
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.2 Score=53.44 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=31.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
-.|++|||+||+|.+|..+++.+... +.+|++..|+
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~--G~~V~~~~~~ 189 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMM--GCYVVGSAGS 189 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 36899999999999999999887776 6789998885
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.084 Score=56.43 Aligned_cols=36 Identities=6% Similarity=0.026 Sum_probs=31.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
-.|++|||+||+|.+|..++..+... +.+|++..|+
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~~--G~~Vi~~~~~ 200 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKLF--GARVIATAGS 200 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHHT--TCEEEEEESS
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCC
Confidence 36889999999999999999887776 6789999885
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=93.51 E-value=0.46 Score=50.56 Aligned_cols=115 Identities=13% Similarity=0.084 Sum_probs=68.9
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.++|.|+|| |.+|..++-.|+..+. + +|.+++........ ...++.+. ......+.+..+
T Consensus 7 ~~KI~IiGa-G~vG~~~a~~l~~~~~-~~ev~L~Di~~~~~~g--~~~dl~~~------------~~~~~~~~i~~~--- 67 (318)
T 1y6j_A 7 RSKVAIIGA-GFVGASAAFTMALRQT-ANELVLIDVFKEKAIG--EAMDINHG------------LPFMGQMSLYAG--- 67 (318)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTC-SSEEEEECCC---CCH--HHHHHTTS------------CCCTTCEEEC-----
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCChHHHHH--HHHHHHHh------------HHhcCCeEEEEC---
Confidence 468999998 9999999999988832 3 89999886432221 11111110 001123322221
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
+ .+.++++|+||.+|+...- ...-.+....|+...+.+.+.+.+. ....++.+.|
T Consensus 68 ---------~-~~a~~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~t 123 (318)
T 1y6j_A 68 ---------D-YSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVS 123 (318)
T ss_dssp ---------C-GGGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECS
T ss_pred ---------C-HHHhCCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEec
Confidence 1 2246899999999987542 2334467788999999999998875 3455555544
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.16 Score=54.01 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=31.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
-.|++||||||+|-+|...++.+... +.+|++..|+.
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~ 184 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARLK--GCRVVGIAGGA 184 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 46899999999999999998777766 67899998853
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.12 Score=54.09 Aligned_cols=36 Identities=33% Similarity=0.499 Sum_probs=30.0
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEE-EeCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYI-LLRP 96 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~-LvR~ 96 (762)
+.++|.|+||+|.+|+.+++.+.+. +++++.. ++|.
T Consensus 6 ~mikV~V~Ga~G~MG~~i~~~l~~~-~~~eLv~~~d~~ 42 (272)
T 4f3y_A 6 SSMKIAIAGASGRMGRMLIEAVLAA-PDATLVGALDRT 42 (272)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHHC-TTEEEEEEBCCT
T ss_pred cccEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEEec
Confidence 4578999999999999999999887 7886666 4554
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.61 Score=49.16 Aligned_cols=116 Identities=16% Similarity=0.070 Sum_probs=73.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
|+|-|+|| |.+|+.++-.|+.+ +-+ ++.+++..+.. ++....++.. .. +........+.++
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~-~~~~el~L~Di~~~~--~~G~a~DL~h---------~~--~~~~~~~~i~~~~--- 62 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLN-LDVDEIALVDIAEDL--AVGEAMDLAH---------AA--AGIDKYPKIVGGA--- 62 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHH-SCCSEEEEECSSHHH--HHHHHHHHHH---------HH--GGGTCCCEEEEES---
T ss_pred CEEEEECc-CHHHHHHHHHHHhC-CCCCEEEEEeCCCCc--chhhhhhhhc---------cc--ccCCCCCeEecCC---
Confidence 67999995 99999999999887 344 88888875311 1111111111 00 1112223333221
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
+++ .++++|+||-.|+..+- ...-.+.++.|..-.+.+.+.+.+. ....++.+=|
T Consensus 63 --------d~~-~~~~aDvVvitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~-~p~aivlvvs 118 (294)
T 2x0j_A 63 --------DYS-LLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVT 118 (294)
T ss_dssp --------CGG-GGTTCSEEEECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECS
T ss_pred --------CHH-HhCCCCEEEEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc-CCceEEEEec
Confidence 122 35799999999997753 4566688999999999999998876 3445554433
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=93.38 E-value=0.082 Score=53.24 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=51.8
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
..++|+|.|+ |.+|+.+++.|.+. ++ |.++.|... +++++ . .++.++.||.+
T Consensus 8 ~~~~viI~G~-G~~G~~la~~L~~~--g~-v~vid~~~~------~~~~~---------------~---~~~~~i~gd~~ 59 (234)
T 2aef_A 8 KSRHVVICGW-SESTLECLRELRGS--EV-FVLAEDENV------RKKVL---------------R---SGANFVHGDPT 59 (234)
T ss_dssp --CEEEEESC-CHHHHHHHHHSTTS--EE-EEEESCGGG------HHHHH---------------H---TTCEEEESCTT
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhC--Ce-EEEEECCHH------HHHHH---------------h---cCCeEEEcCCC
Confidence 3468999997 99999999999887 66 777776532 22221 1 35789999998
Q ss_pred CCCCCCCHHHHHhh-cCCccEEEEccc
Q psy7542 140 VPDLGISAEDRQML-SETIHIVYHIAA 165 (762)
Q Consensus 140 ~~~LGLs~~~l~~l-~~~vDiViH~AA 165 (762)
+++ .+.++ ++++|.||-+..
T Consensus 60 ~~~------~l~~a~i~~ad~vi~~~~ 80 (234)
T 2aef_A 60 RVS------DLEKANVRGARAVIVDLE 80 (234)
T ss_dssp CHH------HHHHTTCTTCSEEEECCS
T ss_pred CHH------HHHhcCcchhcEEEEcCC
Confidence 765 56665 788999997643
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=93.33 E-value=0.17 Score=53.08 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=32.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~ 97 (762)
.++++|+|+|| |.+|+.++..|.+. ++ +|++..|..
T Consensus 125 l~~k~vlVlGa-GG~g~aia~~L~~~--G~~~v~i~~R~~ 161 (283)
T 3jyo_A 125 AKLDSVVQVGA-GGVGNAVAYALVTH--GVQKLQVADLDT 161 (283)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHT--TCSEEEEECSSH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHC--CCCEEEEEECCH
Confidence 47899999997 89999999999998 77 899999864
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=93.25 E-value=0.11 Score=53.85 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=31.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
+++++|+|+|+ |.+|+.++..|++. +.+|++..|..
T Consensus 117 l~~k~vlViGa-Gg~g~a~a~~L~~~--G~~V~v~~R~~ 152 (271)
T 1nyt_A 117 RPGLRILLIGA-GGASRGVLLPLLSL--DCAVTITNRTV 152 (271)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHT--TCEEEEECSSH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHc--CCEEEEEECCH
Confidence 46899999998 77999999999998 47888888863
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=0.35 Score=51.17 Aligned_cols=115 Identities=14% Similarity=0.136 Sum_probs=67.5
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE-eecC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN-GDVA 139 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~-GDl~ 139 (762)
++|.|+|| |.+|..++..|+.. +. .|.++++.... .+....++.+. . ........+.. .|
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~--g~~~v~L~Di~~~~--~~g~~~dl~~~-~----------~~~~~~~~i~~t~d-- 64 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAK--ELGDIVLLDIVEGV--PQGKALDLYEA-S----------PIEGFDVRVTGTNN-- 64 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT--TCSEEEEECSSSSH--HHHHHHHHHTT-H----------HHHTCCCCEEEESC--
T ss_pred CEEEEECC-CHHHHHHHHHHHHC--CCCeEEEEeCCccH--HHHHHHhHHHh-H----------hhcCCCeEEEECCC--
Confidence 58999998 99999999999887 44 77887775421 11111121110 0 00011222221 23
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCcc-ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCC
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFD-DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA 206 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~-~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSa 206 (762)
+ +.++++|+||.+|+...-. ..-.+....|+...+.+.+.+.+. ....++.+.|-
T Consensus 65 ----------~-~a~~~aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~vi~~tN 120 (309)
T 1ur5_A 65 ----------Y-ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVNN 120 (309)
T ss_dssp ----------G-GGGTTCSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGG-CTTCEEEECCS
T ss_pred ----------H-HHHCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEcCC
Confidence 3 3468999999999875422 222345677888888898888876 35666666553
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.57 Score=50.06 Aligned_cols=107 Identities=13% Similarity=0.053 Sum_probs=66.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEE-Ee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPI-NG 136 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V-~G 136 (762)
++.++|.|+|| |.+|..++..|+.. ++ +|.++++..... +....++.+. . ........+. ..
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~--~~~~v~L~Di~~~~~--~g~~~dl~~~---------~--~~~~~~~~v~~t~ 68 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLK--ELGDVVLFDIAEGTP--QGKGLDIAES---------S--PVDGFDAKFTGAN 68 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHT--TCCEEEEECSSSSHH--HHHHHHHHHH---------H--HHHTCCCCEEEES
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhC--CCCeEEEEeCCchhH--HHHHHHHhch---------h--hhcCCCCEEEEeC
Confidence 46679999998 99999999999888 55 889998865321 1111111110 0 0001122222 12
Q ss_pred ecCCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 137 DVAVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
| + +.++++|+||-+|+..+- ...-.+.+..|+.-.+.+.+...+.
T Consensus 69 d------------~-~a~~~aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~ 114 (324)
T 3gvi_A 69 D------------Y-AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKY 114 (324)
T ss_dssp S------------G-GGGTTCSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred C------------H-HHHCCCCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHH
Confidence 2 2 356899999999986542 2333457788999999999888776
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.14 Score=54.55 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=32.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKK 98 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~ 98 (762)
.++++|+|+|| |.+|+.++..|.+. ++ +|++..|...
T Consensus 146 l~gk~~lVlGA-GGaaraia~~L~~~--G~~~v~v~nRt~~ 183 (312)
T 3t4e_A 146 MRGKTMVLLGA-GGAATAIGAQAAIE--GIKEIKLFNRKDD 183 (312)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHT--TCSEEEEEECSST
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHc--CCCEEEEEECCCc
Confidence 46899999997 88999999999998 78 8999999743
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.7 Score=49.27 Aligned_cols=107 Identities=14% Similarity=0.079 Sum_probs=69.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEE-Ee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPI-NG 136 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V-~G 136 (762)
++.++|.|+| +|.+|..++..|+.. +. +|.++++.... ++....++.+. . +.....+.+. ..
T Consensus 3 m~~~kI~iiG-aG~vG~~~a~~l~~~--~~~~v~l~Di~~~~--~~g~a~dL~~~-~----------~~~~~~~~v~~t~ 66 (321)
T 3p7m_A 3 MARKKITLVG-AGNIGGTLAHLALIK--QLGDVVLFDIAQGM--PNGKALDLLQT-C----------PIEGVDFKVRGTN 66 (321)
T ss_dssp CCCCEEEEEC-CSHHHHHHHHHHHHT--TCCEEEEECSSSSH--HHHHHHHHHTT-H----------HHHTCCCCEEEES
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhC--CCceEEEEeCChHH--HHHHHHHHHhh-h----------hhcCCCcEEEEcC
Confidence 4567899999 599999999999887 45 88999886532 11111122111 0 0011122222 12
Q ss_pred ecCCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 137 DVAVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
| . +.++++|+||.+|+..+- ...-.+.+..|+.-.+.+.+.+.+.
T Consensus 67 d------------~-~a~~~aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~ 112 (321)
T 3p7m_A 67 D------------Y-KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHN 112 (321)
T ss_dssp C------------G-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C------------H-HHHCCCCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHH
Confidence 2 2 356899999999987643 3344567888999999999988876
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.22 Score=53.09 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=32.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKK 98 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~ 98 (762)
-.|++|||+||+|-+|...+..+... +.+|++..|+..
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~ 180 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQIL--NFRLIAVTRNNK 180 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSST
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHH
Confidence 36899999999999999999777766 678999998754
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.53 Score=51.28 Aligned_cols=105 Identities=25% Similarity=0.223 Sum_probs=65.7
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc--E---EEE--EeCCCCCcchHHHHH----HHhcChhHHHHHhhhhccccc
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV--K---IYI--LLRPKKNKNSRERLE----EIFQSPLYEALKKEQSESAIF 128 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v--~---V~~--LvR~~~~~~~~eRl~----~ll~~~~f~~l~~~~~~~~~~ 128 (762)
+..+|.||||+|.+|.+++-.|+.. ++ + |.+ +.... .+++++ ++... . ....
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~--~l~~e~~~l~L~d~d~~~----~~~~~~G~amDL~h~-~----------~p~~ 93 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASG--EVFGQDQPIALKLLGSER----SFQALEGVAMELEDS-L----------YPLL 93 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHT--TTTCTTCCEEEEEECCGG----GHHHHHHHHHHHHTT-T----------CTTE
T ss_pred CCCEEEEECCCChHHHHHHHHHHcC--CcCCCCceeEEEecCccc----hhhhhHHHHHhHHhh-h----------hhhc
Confidence 4578999999999999999999876 22 2 333 43322 122222 21110 0 0011
Q ss_pred CCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccC-ccccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 129 EKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVR-FDDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 129 ~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~-f~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
.++.+ ++ + + ...++++|+||-+|+..+ ..+.-.+.++.|+.-.+.+.+...+.
T Consensus 94 ~~v~i--~~----~------~-y~~~~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~ 147 (375)
T 7mdh_A 94 REVSI--GI----D------P-YEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAV 147 (375)
T ss_dssp EEEEE--ES----C------H-HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEE--ec----C------C-HHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222 11 1 2 345689999999998765 34555678999999999998888763
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=93.08 E-value=0.52 Score=50.57 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=29.3
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcC-CCcEEEEEeC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTC-ENVKIYILLR 95 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~g-p~v~V~~LvR 95 (762)
.++|.|.||||.+|+.|++.|+++. |+++|.++..
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s 38 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLAS 38 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEEC
Confidence 4689999999999999999998874 5667777774
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=93.06 E-value=0.056 Score=58.72 Aligned_cols=184 Identities=15% Similarity=0.113 Sum_probs=92.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++.++|.|.||||.+|+.+++.|+++ |+++|..+.+..... .++.+.. +.+...+ ..|+
T Consensus 14 M~~~kV~IiGAtG~iG~~llr~L~~~-p~~elvai~~~~~~g---~~~~~~~--------------~~~~~~v---~~dl 72 (359)
T 1xyg_A 14 EKDIRIGLLGASGYTGAEIVRLLANH-PHFQVTLMTADRKAG---QSMESVF--------------PHLRAQK---LPTL 72 (359)
T ss_dssp -CCEEEEEECCSSHHHHHHHHHHHTC-SSEEEEEEBCSTTTT---SCHHHHC--------------GGGTTSC---CCCC
T ss_pred ccCcEEEEECcCCHHHHHHHHHHHcC-CCcEEEEEeCchhcC---CCHHHhC--------------chhcCcc---cccc
Confidence 34578999999999999999999987 777888887643221 1121110 1111111 1233
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEK 218 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~ 218 (762)
... + +...+++|+||-|++.-. +......+ +. +. ++|-.|+.+-..+ ...-|.
T Consensus 73 ~~~-------~-~~~~~~vDvVf~atp~~~---------------s~~~a~~~-~a-G~-~VId~sa~~R~~~-~~~y~~ 125 (359)
T 1xyg_A 73 VSV-------K-DADFSTVDAVFCCLPHGT---------------TQEIIKEL-PT-AL-KIVDLSADFRLRN-IAEYEE 125 (359)
T ss_dssp BCG-------G-GCCGGGCSEEEECCCTTT---------------HHHHHHTS-CT-TC-EEEECSSTTTCSC-HHHHHH
T ss_pred eec-------c-hhHhcCCCEEEEcCCchh---------------HHHHHHHH-hC-CC-EEEECCccccCCc-hhhhhh
Confidence 211 1 334458999999875421 23444455 43 43 5788888753221 111123
Q ss_pred cCCCCCChhhHHH-HHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCC---EEEEeeeeeccCCCCC
Q psy7542 219 TYPPPVSPHNVIE-KAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMP---CMILRPSIIIPIWKDP 292 (762)
Q Consensus 219 ~~~~p~~p~~~~~-~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glp---v~IvRPs~V~G~~~eP 292 (762)
.|..+....+++. .+=.++|-.-+.+...-+=.-|+.|+-.=.++=.-+.+.. ++. +++-=.+-+.|..+.+
T Consensus 126 ~y~~~~~~~~~l~~~vygvpE~n~~~i~~~~iIanpgC~tt~~~~~l~pL~~~~--~i~~~~i~v~t~~~~SGaG~~~ 201 (359)
T 1xyg_A 126 WYGQPHKAVELQKEVVYGLTEILREDIKKARLVANPGCYPTTIQLPLVPLLKAN--LIKHENIIIDAKSGVSGAGRGA 201 (359)
T ss_dssp HHSSCCSCHHHHTTCEECCHHHHHHHHHTCSEEECCCHHHHHHHHHHHHHHHTT--CBCSSSCEEEEEEEGGGGCSCC
T ss_pred hhcCCcCChhhcCCceEECCccCHHHhccCCEEECCCcHHHHHHHHHHHHHHcC--CCCCCeEEEEEEEEccccCccc
Confidence 3332222221111 0001111111222222233457888887777666665532 343 4444445566665543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.24 Score=52.42 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=31.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
-.|++|||+||+|-+|...+..+... +.+|++..|+
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~ 174 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKAL--GAKLIGTVSS 174 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESS
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 36899999999999999999887777 6789999885
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=92.88 E-value=0.17 Score=54.03 Aligned_cols=37 Identities=14% Similarity=0.285 Sum_probs=31.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
-.|++|||+||+|-+|...+..+... +.+|++..|..
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~--Ga~Vi~~~~~~ 194 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGM--GAKVIAVVNRT 194 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSG
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCH
Confidence 36899999999999999998877766 67899998864
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=92.79 E-value=0.77 Score=49.07 Aligned_cols=118 Identities=13% Similarity=0.044 Sum_probs=69.7
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.++|.|.|| |.+|..++..|... ++ .|.+.++.... .+....-+.+. +. . .....++... .
T Consensus 8 ~~~kI~VIGa-G~vG~~lA~~la~~--g~~~V~L~D~~~~~---~~~~~~~l~~~----~~-~---~~~~~~i~~t-~-- 70 (331)
T 1pzg_A 8 RRKKVAMIGS-GMIGGTMGYLCALR--ELADVVLYDVVKGM---PEGKALDLSHV----TS-V---VDTNVSVRAE-Y-- 70 (331)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHH--TCCEEEEECSSSSH---HHHHHHHHHHH----HH-H---TTCCCCEEEE-C--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhC--CCCeEEEEECChhH---HHHHHHHHHhh----hh-c---cCCCCEEEEe-C--
Confidence 3578999998 99999999999988 55 78888886421 11111000000 00 0 0011222211 1
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCc-cc-----cHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRF-DD-----YMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~-----~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
++++.++++|+||-+++...- .. .-......|+.-.+.+.+...+. ....++.+.|
T Consensus 71 ----------d~~ea~~~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~vi~~t 132 (331)
T 1pzg_A 71 ----------SYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVT 132 (331)
T ss_dssp ----------SHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECC
T ss_pred ----------CHHHHhCCCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEEc
Confidence 355567899999999976532 22 22345667888888888887775 2344554444
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.098 Score=56.63 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=29.5
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
++|.|.||||.+|+.+++.|+++ |+++|.++.|+
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~-p~~ev~~i~~s 42 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADH-PMFELTALAAS 42 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-SSEEEEEEEEC
T ss_pred ceEEEECcCCHHHHHHHHHHhcC-CCCEEEEEEcc
Confidence 58999999999999999998876 67788888753
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=0.35 Score=52.09 Aligned_cols=34 Identities=12% Similarity=0.360 Sum_probs=30.0
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
|++|||+|| |.+|..++..+... +.+|++..|+.
T Consensus 181 g~~VlV~Ga-G~vG~~~~q~a~~~--Ga~Vi~~~~~~ 214 (366)
T 2cdc_A 181 CRKVLVVGT-GPIGVLFTLLFRTY--GLEVWMANRRE 214 (366)
T ss_dssp TCEEEEESC-HHHHHHHHHHHHHH--TCEEEEEESSC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC--CCEEEEEeCCc
Confidence 899999999 99999999877777 66899999865
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=92.53 E-value=0.31 Score=51.69 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=30.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
-.|++|||+||+|.+|...+..+... +.+|++..|+
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~ 182 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMK--GAHTIAVAST 182 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 36899999999999999999877766 6789999885
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.65 Score=49.41 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=68.1
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.++|.|+|+ |.+|..++..|+.. ++ +|.++++... +++.+... ..+.+... . .....++.. ..|
T Consensus 7 ~~~kv~ViGa-G~vG~~ia~~l~~~--g~~~v~l~D~~~~----~~~~~g~a-~dl~~~~~--~--~~~~~~i~~-t~d- 72 (315)
T 3tl2_A 7 KRKKVSVIGA-GFTGATTAFLLAQK--ELADVVLVDIPQL----ENPTKGKA-LDMLEASP--V--QGFDANIIG-TSD- 72 (315)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHT--TCCEEEEECCGGG----HHHHHHHH-HHHHHHHH--H--HTCCCCEEE-ESC-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhC--CCCeEEEEeccch----HHHHHHhh-hhHHHhhh--h--ccCCCEEEE-cCC-
Confidence 4678999996 99999999999988 56 8899888521 11221110 00011000 0 001122221 112
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
+ ..++++|+||-+|+..+- ...-.+.+..|+.-.+.+.+.+.+.
T Consensus 73 -----------~-~a~~~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~ 117 (315)
T 3tl2_A 73 -----------Y-ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH 117 (315)
T ss_dssp -----------G-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------H-HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 245899999999987653 3445678899999999999888875
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.13 E-value=0.16 Score=54.53 Aligned_cols=37 Identities=14% Similarity=0.268 Sum_probs=31.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
-.|++|||+||+|-+|...+..+... +.+|++..|+.
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~--Ga~Vi~~~~~~ 202 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAF--GAEVYATAGST 202 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCH
Confidence 35899999999999999999887776 67899998853
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=92.11 E-value=0.33 Score=52.33 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=31.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
-.|++|||+||+|.+|...+..+... +.+|++..|.
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~ 197 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKA--KCHVIGTCSS 197 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHT--TCEEEEEESS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEECC
Confidence 46889999999999999999877766 6789999885
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=92.11 E-value=1.6 Score=46.26 Aligned_cols=117 Identities=13% Similarity=0.068 Sum_probs=72.3
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHH-hcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEI-FQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~l-l~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.++|.|+|| |.+|..++..|+..+.-.+|.++++.. +|++.. .+ +.... +.....+.+.. |
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~------~~~~g~~~d------l~~~~--~~~~~~~~v~~-~- 67 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDT------EKVRGDVMD------LKHAT--PYSPTTVRVKA-G- 67 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCH------HHHHHHHHH------HHHHG--GGSSSCCEEEE-C-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCh------hHhhhhhhh------HHhhh--hhcCCCeEEEe-C-
Confidence 4578999998 999999999998873212788877642 233211 10 00000 11113333332 2
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
+ .+.++++|+||-+|+...- .....+.+..|+.-.+.+.+...+. ....++.+.|
T Consensus 68 -~----------~~a~~~aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~t 123 (317)
T 3d0o_A 68 -E----------YSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVAT 123 (317)
T ss_dssp -C----------GGGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred -C----------HHHhCCCCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Confidence 1 2346899999999987543 3344467788998888888888876 4455555544
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=92.09 E-value=0.19 Score=54.22 Aligned_cols=33 Identities=12% Similarity=0.376 Sum_probs=28.9
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEe
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILL 94 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~Lv 94 (762)
.++|.|.||||.+|+.+++.|++. |+++|.++.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~-p~~elvai~ 36 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQKMVKMLAKH-PYLELVKVS 36 (350)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTC-SSEEEEEEE
T ss_pred CcEEEEECcCCHHHHHHHHHHHhC-CCcEEEEEe
Confidence 468999999999999999988876 777888886
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=92.01 E-value=0.44 Score=51.37 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=27.1
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcC-CCcEEEEEe
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTC-ENVKIYILL 94 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~g-p~v~V~~Lv 94 (762)
|++|.|.||||++|..|++.|.++. |.+++..+.
T Consensus 1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~ 35 (344)
T 3tz6_A 1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFA 35 (344)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEE
Confidence 4689999999999999999777652 444777765
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=91.98 E-value=0.49 Score=52.30 Aligned_cols=72 Identities=17% Similarity=0.209 Sum_probs=53.7
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+++|+|.|+ |-+|+.+++.|.+. ++.|.++.+.. ++++.+. ...+.++.||.++
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~--g~~vvvId~d~------~~v~~~~-----------------~~g~~vi~GDat~ 57 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSS--GVKMVVLDHDP------DHIETLR-----------------KFGMKVFYGDATR 57 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHT--TCCEEEEECCH------HHHHHHH-----------------HTTCCCEESCTTC
T ss_pred CCeEEEECC-CHHHHHHHHHHHHC--CCCEEEEECCH------HHHHHHH-----------------hCCCeEEEcCCCC
Confidence 467999995 99999999999988 67788888753 3443321 1356789999998
Q ss_pred CCCCCCHHHHHhh-cCCccEEEEcc
Q psy7542 141 PDLGISAEDRQML-SETIHIVYHIA 164 (762)
Q Consensus 141 ~~LGLs~~~l~~l-~~~vDiViH~A 164 (762)
++ .+..+ ++++|+||-+.
T Consensus 58 ~~------~L~~agi~~A~~viv~~ 76 (413)
T 3l9w_A 58 MD------LLESAGAAKAEVLINAI 76 (413)
T ss_dssp HH------HHHHTTTTTCSEEEECC
T ss_pred HH------HHHhcCCCccCEEEECC
Confidence 76 46665 67899998654
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=91.98 E-value=1.1 Score=47.50 Aligned_cols=114 Identities=12% Similarity=-0.010 Sum_probs=68.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
|+|.|+|| |.+|..++..|+..+. + +|.++++.... ++....++... . ......+.+...| +
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~-~~el~l~D~~~~k--~~g~a~DL~~~-~----------~~~~~~~~v~~~~--~ 63 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDV-AKEVVMVDIKDGM--PQGKALDMRES-S----------PIHGFDTRVTGTN--D 63 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTC-SSEEEEECSSTTH--HHHHHHHHHHH-H----------HHHTCCCEEEEES--S
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCchHH--HHHHHHHHhcc-c----------cccCCCcEEEECC--C
Confidence 57999996 9999999999998832 3 88999886532 11111121110 0 0011223333222 1
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
.+.++++|+||-+|+..+- ...-.+.+..|+.-.+.+.+...+. ....++.+
T Consensus 64 ----------~~a~~~aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~viv 116 (314)
T 3nep_X 64 ----------YGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTIIV 116 (314)
T ss_dssp ----------SGGGTTCSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTT-CTTCEEEE
T ss_pred ----------HHHhCCCCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEe
Confidence 1346899999999987642 2334467889999999999988876 33444433
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=91.90 E-value=1.6 Score=46.58 Aligned_cols=114 Identities=12% Similarity=0.068 Sum_probs=68.9
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.++|.|+|| |.+|..++-.|+..+ -+ +|.++++.. +|++.... .+... ......+.+..+|
T Consensus 8 ~~~KI~IiGa-G~vG~~la~~l~~~~-~~~el~L~Di~~------~~~~g~~~-----dl~~~---~~~~~~~~i~~~~- 70 (326)
T 2zqz_A 8 DHQKVILVGD-GAVGSSYAYAMVLQG-IAQEIGIVDIFK------DKTKGDAI-----DLSNA---LPFTSPKKIYSAE- 70 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSCH------HHHHHHHH-----HHHTT---GGGSCCCEEEECC-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCC-CCCEEEEEeCCc------hHhHHHHH-----HHHHH---HHhcCCeEEEECC-
Confidence 3478999998 999999999998872 23 888888842 33322100 00000 1112344444321
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
.+.++++|+||.+|+...- ...-.+.+..|+.-.+.+.+.+.+. ....++.+
T Consensus 71 ------------~~a~~~aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv 123 (326)
T 2zqz_A 71 ------------YSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLV 123 (326)
T ss_dssp ------------GGGGGGCSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHH-TCCSEEEE
T ss_pred ------------HHHhCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEE
Confidence 2236799999999987542 2333457788999899998888776 33334433
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=91.50 E-value=1.4 Score=46.71 Aligned_cols=113 Identities=14% Similarity=0.080 Sum_probs=66.6
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.++|.|+|| |.+|..++-.|+..+ -+ +|.++++.. +|++.... .+... ......+.+..+|
T Consensus 5 ~~KI~IiGa-G~vG~~~a~~l~~~~-~~~el~L~Di~~------~~~~g~~~-----dl~~~---~~~~~~~~v~~~~-- 66 (318)
T 1ez4_A 5 HQKVVLVGD-GAVGSSYAFAMAQQG-IAEEFVIVDVVK------DRTKGDAL-----DLEDA---QAFTAPKKIYSGE-- 66 (318)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSH------HHHHHHHH-----HHHGG---GGGSCCCEEEECC--
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCC-CCCEEEEEeCCc------hHHHHHHH-----HHHHH---HHhcCCeEEEECC--
Confidence 468999998 999999999998882 23 888888842 33332100 01100 1112344444221
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCcc-ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFD-DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~-~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
.+.++++|+||.+|+...-. ..-.+.+..|+.-.+.+.+...+. ....++.+
T Consensus 67 -----------~~a~~~aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv 119 (318)
T 1ez4_A 67 -----------YSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLV 119 (318)
T ss_dssp -----------GGGGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEE
T ss_pred -----------HHHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEE
Confidence 23468999999999875322 222346678888889999888876 33444443
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=91.49 E-value=0.58 Score=50.85 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=26.6
Q ss_pred CEEEEECCCChhHHHHHHHHHHcC-CCcEEEEEeC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTC-ENVKIYILLR 95 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~g-p~v~V~~LvR 95 (762)
++|.|.||||++|..|++.|.++. |.+++..+.-
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as 37 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS 37 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEEC
T ss_pred cEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEc
Confidence 579999999999999999777752 3446666653
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=91.41 E-value=0.56 Score=50.01 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=30.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
-.|++||||||+|-+|..+++.+... .+.+|++..|+
T Consensus 169 ~~g~~vlV~Gagg~iG~~~~~~a~~~-~Ga~Vi~~~~~ 205 (347)
T 1jvb_A 169 DPTKTLLVVGAGGGLGTMAVQIAKAV-SGATIIGVDVR 205 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHH-TCCEEEEEESS
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHc-CCCeEEEEcCC
Confidence 36899999999999999999877766 24588888875
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=91.40 E-value=1.6 Score=46.78 Aligned_cols=115 Identities=11% Similarity=0.075 Sum_probs=70.8
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEE-Eeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPI-NGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V-~GDl 138 (762)
..++|.|+|| |.+|..++..|+..+.-.+|.++++.... ++....++.... + +......+ .+|
T Consensus 18 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~--~~g~a~DL~~~~-----------~-~~~~~~i~~~~d- 81 (331)
T 4aj2_A 18 PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDK--LKGEMMDLQHGS-----------L-FLKTPKIVSSKD- 81 (331)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHH--HHHHHHHHHHTG-----------G-GCSCCEEEECSS-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHH--HHHHHHhhhhhh-----------h-ccCCCeEEEcCC-
Confidence 5789999997 99999999999988321288888875210 111111121110 0 11111222 222
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
++ .++++|+||-+|+..+- .+.-.+.++.|+.-.+.+.+.+.+. ....++.+
T Consensus 82 -----------~~-~~~~aDiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlv 134 (331)
T 4aj2_A 82 -----------YS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLI 134 (331)
T ss_dssp -----------GG-GGTTEEEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEE
T ss_pred -----------HH-HhCCCCEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEE
Confidence 33 36899999999997643 2344568899999999999888876 33444433
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=91.21 E-value=1.6 Score=46.00 Aligned_cols=106 Identities=12% Similarity=-0.008 Sum_probs=64.9
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE-eecCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN-GDVAV 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~-GDl~~ 140 (762)
|+|.|.|| |.+|..++..|...+.+.+|.+.+|.... .+.+..-+.+.. +.......+.. .|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~---~~~~~~~l~~~~----------~~~~~~~~i~~t~d--- 63 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGI---PQGKALDMYESG----------PVGLFDTKVTGSND--- 63 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSH---HHHHHHHHHTTH----------HHHTCCCEEEEESC---
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhH---HHHHHHhHHhhh----------hcccCCcEEEECCC---
Confidence 57999998 99999999998886334589999986531 111111011110 00011111111 12
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
++. ++++|+||-+++.... ...-.+.+..|+.-...+.+...+.
T Consensus 64 ---------~~~-l~~aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~ 108 (310)
T 1guz_A 64 ---------YAD-TANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH 108 (310)
T ss_dssp ---------GGG-GTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------HHH-HCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 333 5889999999886543 2334567788888888888887765
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=91.18 E-value=0.19 Score=57.23 Aligned_cols=35 Identities=31% Similarity=0.387 Sum_probs=27.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
+++++++|||| |.+|+.++..|++. |++|++..|.
T Consensus 362 l~~k~vlV~Ga-GGig~aia~~L~~~--G~~V~i~~R~ 396 (523)
T 2o7s_A 362 LASKTVVVIGA-GGAGKALAYGAKEK--GAKVVIANRT 396 (523)
T ss_dssp ----CEEEECC-SHHHHHHHHHHHHH--CC-CEEEESS
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHC--CCEEEEEECC
Confidence 46889999999 79999999999999 5678888886
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=91.13 E-value=0.19 Score=52.59 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=31.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~ 97 (762)
.++++|+|+|+ |-+|+.++..|.+. ++ +|++..|..
T Consensus 115 l~~k~vlvlGa-Gg~g~aia~~L~~~--G~~~v~v~~R~~ 151 (277)
T 3don_A 115 IEDAYILILGA-GGASKGIANELYKI--VRPTLTVANRTM 151 (277)
T ss_dssp GGGCCEEEECC-SHHHHHHHHHHHTT--CCSCCEEECSCG
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHC--CCCEEEEEeCCH
Confidence 46899999996 89999999999988 66 788888875
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=91.13 E-value=2.8 Score=44.21 Aligned_cols=113 Identities=11% Similarity=0.015 Sum_probs=69.9
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++|.|+|| |.+|..++-.|+..+.--+|.++++.. +|++.... .+.... + ....+.+..+|
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~------~k~~g~a~-----dl~~~~--~-~~~~~~v~~~~---- 61 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDR------KLAQAHAE-----DILHAT--P-FAHPVWVWAGS---- 61 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSH------HHHHHHHH-----HHHTTG--G-GSCCCEEEECC----
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCh------hHHHHHHH-----HHHHhH--h-hcCCeEEEECC----
Confidence 57999998 999999999998873212889988852 33332100 000000 1 11334443322
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
.+.++++|+||.+|+...- ...-.+....|+.-.+.+.+.+.+. ....++.+
T Consensus 62 ---------~~a~~~aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv 114 (310)
T 2xxj_A 62 ---------YGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLV 114 (310)
T ss_dssp ---------GGGGTTEEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEE
T ss_pred ---------HHHhCCCCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEE
Confidence 1236899999999987542 2334467788999889998888776 33444443
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=91.04 E-value=0.67 Score=50.43 Aligned_cols=34 Identities=18% Similarity=0.381 Sum_probs=26.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCC--CcEEEEEeC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCE--NVKIYILLR 95 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp--~v~V~~LvR 95 (762)
++|.|.||||++|..|+++||...| .+++..+.-
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss 36 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFST 36 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEec
Confidence 4799999999999999996665534 347766653
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=91.00 E-value=0.36 Score=50.79 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=31.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~ 97 (762)
+++++|+|+|+ |.+|+.++..|++. ++ +|++..|..
T Consensus 139 l~~~~vlVlGa-Gg~g~aia~~L~~~--G~~~V~v~nR~~ 175 (297)
T 2egg_A 139 LDGKRILVIGA-GGGARGIYFSLLST--AAERIDMANRTV 175 (297)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTT--TCSEEEEECSSH
T ss_pred CCCCEEEEECc-HHHHHHHHHHHHHC--CCCEEEEEeCCH
Confidence 46899999997 78999999999988 77 899999863
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=90.95 E-value=0.25 Score=51.65 Aligned_cols=36 Identities=8% Similarity=0.230 Sum_probs=31.1
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
.|++|||+||+|.+|...+..+... +.+|++..|+.
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~--Ga~Vi~~~~~~ 160 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRP 160 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSG
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 6899999999999999998877666 67899999864
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=90.95 E-value=0.85 Score=49.56 Aligned_cols=37 Identities=19% Similarity=0.422 Sum_probs=28.2
Q ss_pred CEEEEECCCChhHHHHHHHHHHcC--CCcEEEEEeCCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTC--ENVKIYILLRPKK 98 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~g--p~v~V~~LvR~~~ 98 (762)
++|.|.||||.+|+.|++.|+... +.+.|+++.....
T Consensus 2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~ 40 (367)
T 1t4b_A 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQL 40 (367)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSST
T ss_pred cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCC
Confidence 579999999999999999766652 1238888776533
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=0.23 Score=48.86 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=29.4
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
|+|+|+||+|++|+.++..|++. +++|++..|.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~--g~~V~~~~r~ 33 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATL--GHEIVVGSRR 33 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT--TCEEEEEESS
T ss_pred CeEEEEcCCCHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 47999999999999999999987 5688888885
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=90.62 E-value=0.37 Score=51.49 Aligned_cols=32 Identities=22% Similarity=0.503 Sum_probs=27.8
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEE
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYIL 93 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~L 93 (762)
.|++|||+||+|-+|...+..+... +.+|++.
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~--Ga~Vi~~ 181 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALAR--GARVFAT 181 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEE
Confidence 5899999999999999998877766 6788887
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=90.53 E-value=0.52 Score=49.37 Aligned_cols=36 Identities=28% Similarity=0.409 Sum_probs=31.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
++|++|+|.|++|.+|+.++..|++. +.+|++..|.
T Consensus 158 l~Gk~vvVvGrs~iVG~p~A~lL~~~--gAtVtv~h~~ 193 (285)
T 3p2o_A 158 LEGKDAVIIGASNIVGRPMATMLLNA--GATVSVCHIK 193 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCC
Confidence 57999999999999999999999998 6777777653
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=90.44 E-value=0.42 Score=49.55 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=31.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
.++++|+|+|+ |.+|+.++..|++. +.+|++..|..
T Consensus 117 ~~~~~vlvlGa-Gg~g~a~a~~L~~~--G~~v~v~~R~~ 152 (272)
T 1p77_A 117 RPNQHVLILGA-GGATKGVLLPLLQA--QQNIVLANRTF 152 (272)
T ss_dssp CTTCEEEEECC-SHHHHTTHHHHHHT--TCEEEEEESSH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHC--CCEEEEEECCH
Confidence 46899999997 78999999999998 47889999863
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=90.28 E-value=0.36 Score=50.36 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=30.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
+++++|+||||+ .+|+.++..|++. + +|++..|.
T Consensus 126 l~~k~vlV~GaG-giG~aia~~L~~~--G-~V~v~~r~ 159 (287)
T 1nvt_A 126 VKDKNIVIYGAG-GAARAVAFELAKD--N-NIIIANRT 159 (287)
T ss_dssp CCSCEEEEECCS-HHHHHHHHHHTSS--S-EEEEECSS
T ss_pred cCCCEEEEECch-HHHHHHHHHHHHC--C-CEEEEECC
Confidence 478999999985 9999999999998 5 88988885
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=90.19 E-value=0.74 Score=50.22 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=27.6
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCC--CcEEEEEeCCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCE--NVKIYILLRPK 97 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp--~v~V~~LvR~~ 97 (762)
.++|.|.||||++|..|+++||...| .+++..+.-+.
T Consensus 4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~ 42 (377)
T 3uw3_A 4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSN 42 (377)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechh
Confidence 46899999999999999996666534 34776665433
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=90.09 E-value=0.33 Score=51.67 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=29.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
-.|++|||+|| |.+|..++..+... +.+|+++.|+
T Consensus 163 ~~g~~VlV~Ga-G~vG~~~~~~a~~~--Ga~Vi~~~~~ 197 (339)
T 1rjw_A 163 KPGEWVAIYGI-GGLGHVAVQYAKAM--GLNVVAVDIG 197 (339)
T ss_dssp CTTCEEEEECC-STTHHHHHHHHHHT--TCEEEEECSC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHc--CCEEEEEeCC
Confidence 46899999999 66999998877766 6789999885
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=90.04 E-value=0.55 Score=50.77 Aligned_cols=77 Identities=13% Similarity=0.139 Sum_probs=50.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.++++|+|+|+ |-+|..++..+... +.+|++.+|.. +|++.+.+. ....+..+.
T Consensus 165 l~~~~VlViGa-GgvG~~aa~~a~~~--Ga~V~v~dr~~------~r~~~~~~~--------------~~~~~~~~~--- 218 (361)
T 1pjc_A 165 VKPGKVVILGG-GVVGTEAAKMAVGL--GAQVQIFDINV------ERLSYLETL--------------FGSRVELLY--- 218 (361)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHHH--------------HGGGSEEEE---
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhC--CCEEEEEeCCH------HHHHHHHHh--------------hCceeEeee---
Confidence 35689999998 99999999999888 56899999863 333332110 011221211
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEccccc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATV 167 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v 167 (762)
. +.+++.+.+.++|+||++++..
T Consensus 219 ~------~~~~~~~~~~~~DvVI~~~~~~ 241 (361)
T 1pjc_A 219 S------NSAEIETAVAEADLLIGAVLVP 241 (361)
T ss_dssp C------CHHHHHHHHHTCSEEEECCCCT
T ss_pred C------CHHHHHHHHcCCCEEEECCCcC
Confidence 1 1235666667899999998753
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=90.00 E-value=1 Score=46.21 Aligned_cols=34 Identities=18% Similarity=0.351 Sum_probs=28.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
++|.|.|++|-+|+.+++.+.+. +++++....+.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~-~~~elva~~d~ 34 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAA-DDLTLSAELDA 34 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHC-TTCEEEEEECT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEcc
Confidence 47999999999999999998876 67877766554
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=89.91 E-value=1.3 Score=47.33 Aligned_cols=112 Identities=10% Similarity=0.064 Sum_probs=68.8
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc--EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEE-Ee
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV--KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPI-NG 136 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v--~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V-~G 136 (762)
..++|.|+|| |.+|..++..|+.. ++ +|.++++.... ++....++... . + +.....++ .+
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~--g~~~ev~L~Di~~~~--~~g~a~DL~~~---------~--~-~~~~~~i~~t~ 82 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMK--DLADEVALVDVMEDK--LKGEMMDLEHG---------S--L-FLHTAKIVSGK 82 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHH--CCCSEEEEECSCHHH--HHHHHHHHHHH---------G--G-GSCCSEEEEES
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhC--CCCCeEEEEECCHHH--HHHHHHHhhhh---------h--h-cccCCeEEEcC
Confidence 4578999998 99999999999988 44 88888874311 11111111110 0 1 11111222 23
Q ss_pred ecCCCCCCCCHHHHHhhcCCccEEEEcccccCcc-ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEE
Q psy7542 137 DVAVPDLGISAEDRQMLSETIHIVYHIAATVRFD-DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVY 202 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~-~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~ 202 (762)
|.. . ++++|+||-+|+..+-. +.-.+.+..|+.-.+.+.+.+.+. ....++.
T Consensus 83 d~~------------~-~~daDiVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~il 135 (330)
T 3ldh_A 83 DYS------------V-SAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKE 135 (330)
T ss_dssp SSC------------S-CSSCSEEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEE
T ss_pred CHH------------H-hCCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEE
Confidence 432 2 58999999999876432 333457788988888888888776 3344443
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=89.87 E-value=0.17 Score=46.87 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=29.5
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
.+++|+|.|+ |.+|+.++..|.+. +++|++..|..
T Consensus 20 ~~~~v~iiG~-G~iG~~~a~~l~~~--g~~v~v~~r~~ 54 (144)
T 3oj0_A 20 GGNKILLVGN-GMLASEIAPYFSYP--QYKVTVAGRNI 54 (144)
T ss_dssp CCCEEEEECC-SHHHHHHGGGCCTT--TCEEEEEESCH
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhC--CCEEEEEcCCH
Confidence 3889999995 99999999998876 66788888863
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=89.78 E-value=0.55 Score=49.12 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=31.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~ 97 (762)
+++++|+|+|+ |.+|+.++..|.+. ++ +|++..|..
T Consensus 124 l~~k~vlvlGa-Gg~g~aia~~L~~~--G~~~v~v~~R~~ 160 (281)
T 3o8q_A 124 LKGATILLIGA-GGAARGVLKPLLDQ--QPASITVTNRTF 160 (281)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTT--CCSEEEEEESSH
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHhc--CCCeEEEEECCH
Confidence 47899999997 78999999999988 76 899999964
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=89.69 E-value=0.96 Score=48.68 Aligned_cols=115 Identities=11% Similarity=0.096 Sum_probs=66.4
Q ss_pred hhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcch-------------HHHHHHHhcChhHHHHHhh
Q psy7542 56 SATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNS-------------RERLEEIFQSPLYEALKKE 121 (762)
Q Consensus 56 ~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~-------------~eRl~~ll~~~~f~~l~~~ 121 (762)
++-+++.+|+|.|+ |.+|+.+++.|.+. |+ +|.+++...-..+- +.|.+.+ -++++.-
T Consensus 31 q~~L~~~~VlivG~-GGlG~~ia~~La~~--Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~-----~~~l~~l 102 (346)
T 1y8q_A 31 QKRLRASRVLLVGL-KGLGAEIAKNLILA--GVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEAS-----LERAQNL 102 (346)
T ss_dssp HHHHHTCEEEEECC-SHHHHHHHHHHHHH--TCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHH-----HHHHHHT
T ss_pred HHHHhCCeEEEECC-CHHHHHHHHHHHHc--CCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHH-----HHHHHhH
Confidence 45567889999995 77999999999999 78 88888543211000 0011110 1112211
Q ss_pred hhcccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEE
Q psy7542 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFV 201 (762)
Q Consensus 122 ~~~~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV 201 (762)
+ ..-+++.+..++.+ . ...+++++|+||.+.. +. ..-..+-++|.+. + ..||
T Consensus 103 n----p~v~v~~~~~~~~~-~-------~~~~~~~~dvVv~~~d------~~--------~~r~~ln~~~~~~-~-ip~i 154 (346)
T 1y8q_A 103 N----PMVDVKVDTEDIEK-K-------PESFFTQFDAVCLTCC------SR--------DVIVKVDQICHKN-S-IKFF 154 (346)
T ss_dssp C----TTSEEEEECSCGGG-C-------CHHHHTTCSEEEEESC------CH--------HHHHHHHHHHHHT-T-CEEE
T ss_pred C----CCeEEEEEecccCc-c-------hHHHhcCCCEEEEcCC------CH--------HHHHHHHHHHHHc-C-CCEE
Confidence 1 12356666666654 1 2455688999997632 21 2223466677775 3 5677
Q ss_pred EEeCC
Q psy7542 202 YVSTA 206 (762)
Q Consensus 202 ~vSSa 206 (762)
..++.
T Consensus 155 ~~~~~ 159 (346)
T 1y8q_A 155 TGDVF 159 (346)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 77654
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=89.68 E-value=0.55 Score=50.16 Aligned_cols=35 Identities=11% Similarity=0.211 Sum_probs=30.0
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
+++|+|+||+|-+|...+..+... +.+|++..|+.
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~--Ga~Vi~~~~~~ 199 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEE--GFRPIVTVRRD 199 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESCG
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 389999999999999999877776 67899998864
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=89.66 E-value=0.7 Score=48.06 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=31.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~ 97 (762)
.++++|+|+|+ |.+|+.++..|.+. ++ +|++..|..
T Consensus 118 l~~k~~lvlGa-Gg~~~aia~~L~~~--G~~~v~i~~R~~ 154 (272)
T 3pwz_A 118 LRNRRVLLLGA-GGAVRGALLPFLQA--GPSELVIANRDM 154 (272)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHT--CCSEEEEECSCH
T ss_pred ccCCEEEEECc-cHHHHHHHHHHHHc--CCCEEEEEeCCH
Confidence 46899999997 78999999999998 77 899999964
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=89.53 E-value=0.52 Score=50.90 Aligned_cols=179 Identities=15% Similarity=0.155 Sum_probs=90.8
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC-CCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP-KKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~-~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
..+|.|.||||++|..|++.|.++ |.++|..+.-. ..++ ++.+.. +... .|+.
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~h-P~~el~~l~S~~~aG~----~~~~~~--------------p~~~-------~~l~ 66 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNH-PEAKITYLSSRTYAGK----KLEEIF--------------PSTL-------ENSI 66 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-TTEEEEEEECSTTTTS----BHHHHC--------------GGGC-------CCCB
T ss_pred eeEEEEECCCCHHHHHHHHHHHcC-CCcEEEEEeCcccccC----ChHHhC--------------hhhc-------cCce
Confidence 357999999999999999999988 77787777532 2232 222221 1111 2332
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCccccccc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKT 219 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~ 219 (762)
-.++ +. +.+.+++|+||-|++.- . +..+...+ . + .++|=.|+.+=..+. .+-|+.
T Consensus 67 ~~~~--~~---~~~~~~~Dvvf~alp~~-------~--------s~~~~~~~--~-g-~~VIDlSsdfRl~~~-~~y~~~ 121 (351)
T 1vkn_A 67 LSEF--DP---EKVSKNCDVLFTALPAG-------A--------SYDLVREL--K-G-VKIIDLGADFRFDDP-GVYREW 121 (351)
T ss_dssp CBCC--CH---HHHHHHCSEEEECCSTT-------H--------HHHHHTTC--C-S-CEEEESSSTTTCSSH-HHHHHH
T ss_pred EEeC--CH---HHhhcCCCEEEECCCcH-------H--------HHHHHHHh--C-C-CEEEECChhhhCCch-hhhhhh
Confidence 2221 22 23346799999876531 0 11222222 1 3 357777877633221 111222
Q ss_pred CCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCC---EEEEeeeeeccCCCCC
Q psy7542 220 YPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMP---CMILRPSIIIPIWKDP 292 (762)
Q Consensus 220 ~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glp---v~IvRPs~V~G~~~eP 292 (762)
|..+....+++...=.++|-.-+.+....+=.-||.|+.+=.++=.-+.+.. .+. +++-=-+-+.|.++.+
T Consensus 122 y~~~h~~p~~~~~~yglPE~n~e~i~~a~iIANPgC~~t~~~laL~PL~~~~--~i~~~~iiv~t~sgvSGAG~~~ 195 (351)
T 1vkn_A 122 YGKELSGYENIKRVYGLPELHREEIKNAQVVGNPGCYPTSVILALAPALKHN--LVDPETILVDAKSGVSGAGRKE 195 (351)
T ss_dssp HCCCCTTGGGCCEEECCHHHHHHHHTTCSEEECCCHHHHHHHHHHHHHHHTT--CSCCSEEEEEEEEEGGGGCSCC
T ss_pred cCCCCCchhhcCCceECCccCHHHhccCCEEeCCChHHHHHHHHHHHHHHcC--CCCCCEEEEEEEeeccccCccc
Confidence 3222211000000000111111222222233468999888777766665442 343 6666677778877654
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=89.32 E-value=0.73 Score=53.58 Aligned_cols=123 Identities=12% Similarity=0.151 Sum_probs=70.4
Q ss_pred hhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHH-----HH---hcChhHHHHHhhhhcc
Q psy7542 55 ISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE-----EI---FQSPLYEALKKEQSES 125 (762)
Q Consensus 55 i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~-----~l---l~~~~f~~l~~~~~~~ 125 (762)
.++.+.+.+|+|.|+ |.+|+.+++.|.+. |+ +|.+++...-..+-..|.- ++ .....-++++.-.
T Consensus 11 ~Q~kL~~s~VlVVGa-GGLGsevak~La~a--GVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iN--- 84 (640)
T 1y8q_B 11 LAEAVAGGRVLVVGA-GGIGCELLKNLVLT--GFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFY--- 84 (640)
T ss_dssp HHHHHHHCEEEEECC-SHHHHHHHHHHHHH--TCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTC---
T ss_pred HHHHHhcCeEEEECc-CHHHHHHHHHHHHc--CCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHC---
Confidence 345567889999996 88999999999999 78 8888886542221111100 00 0000011222111
Q ss_pred cccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 126 AIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 126 ~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
..-+|+.+..+++...+ ...+++++|+||.+.-. +..-..+-++|.+. + ..+|+.++
T Consensus 85 -P~v~V~a~~~~i~~~~~------~~~~~~~~DlVvda~Dn--------------~~aR~~ln~~c~~~-~-iPlI~~g~ 141 (640)
T 1y8q_B 85 -PKANIVAYHDSIMNPDY------NVEFFRQFILVMNALDN--------------RAARNHVNRMCLAA-D-VPLIESGT 141 (640)
T ss_dssp -TTCEEEEEESCTTSTTS------CHHHHTTCSEEEECCSC--------------HHHHHHHHHHHHHH-T-CCEEEEEE
T ss_pred -CCCeEEEEecccchhhh------hHhhhcCCCEEEECCCC--------------HHHHHHHHHHHHHc-C-CCEEEEEE
Confidence 22467777777765442 13456889999987421 22223455667665 3 34666655
Q ss_pred C
Q psy7542 206 A 206 (762)
Q Consensus 206 a 206 (762)
.
T Consensus 142 ~ 142 (640)
T 1y8q_B 142 A 142 (640)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=88.93 E-value=0.83 Score=47.81 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=30.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLR 95 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR 95 (762)
++|++|+|.|++|.+|+.++..|++. +.+|++..|
T Consensus 159 l~Gk~vvVIG~s~iVG~p~A~lL~~~--gAtVtv~hs 193 (285)
T 3l07_A 159 TEGAYAVVVGASNVVGKPVSQLLLNA--KATVTTCHR 193 (285)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHT--TCEEEEECT
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHC--CCeEEEEeC
Confidence 57999999999999999999999998 677777665
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=88.88 E-value=0.53 Score=54.32 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=32.0
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCC
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPK 97 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~ 97 (762)
-+++.+|+|.| .|.+|+.+++.|.+. |+ +|.++++..
T Consensus 323 kL~~arVLIVG-aGGLGs~vA~~La~a--GVG~ItLvD~D~ 360 (615)
T 4gsl_A 323 IIKNTKVLLLG-AGTLGCYVSRALIAW--GVRKITFVDNGT 360 (615)
T ss_dssp HHHTCEEEEEC-CSHHHHHHHHHHHHT--TCCEEEEECCCB
T ss_pred HHhCCeEEEEC-CCHHHHHHHHHHHHc--CCCEEEEEcCCC
Confidence 45788999999 588999999999998 88 898888764
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=88.65 E-value=0.45 Score=54.84 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=30.9
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCC
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRP 96 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~ 96 (762)
+-+++++|+|.| .|.+|+.+++.|.+. |+ +|.+++..
T Consensus 323 ~kL~~~kVLIVG-aGGLGs~va~~La~a--GVG~ItLvD~D 360 (598)
T 3vh1_A 323 DIIKNTKVLLLG-AGTLGCYVSRALIAW--GVRKITFVDNG 360 (598)
T ss_dssp HHHHTCEEEEEC-CSHHHHHHHHHHHTT--TCCEEEEECCS
T ss_pred HHHhCCeEEEEC-CCHHHHHHHHHHHHc--CCCEEEEECCC
Confidence 345678999999 577999999999998 78 88888554
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=88.53 E-value=3 Score=43.81 Aligned_cols=113 Identities=12% Similarity=0.116 Sum_probs=61.8
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|.|+|| |.+|..++..|+..+..-+|.++++.. ++++.... .+.... + ....+.+..+|
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~------~~~~~~~~-----~l~~~~--~-~~~~~~i~~~~---- 61 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDE------DRAQAEAE-----DIAHAA--P-VSHGTRVWHGG---- 61 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSH------HHHHHHHH-----HHTTSC--C-TTSCCEEEEEC----
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCH------HHHHHHHH-----hhhhhh--h-hcCCeEEEECC----
Confidence 57999998 999999999998883211889998853 23321100 000000 0 11222222222
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
. +.++++|+||-+++...- ...-.+.+..|+.-.+.+++...+. ....++.+
T Consensus 62 --------~-~a~~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~ 114 (304)
T 2v6b_A 62 --------H-SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLV 114 (304)
T ss_dssp --------G-GGGTTCSEEEECC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEE
T ss_pred --------H-HHhCCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEE
Confidence 1 246799999999975432 2223345677888888888887775 33434333
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=88.11 E-value=0.63 Score=50.01 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=31.9
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCC
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPK 97 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~ 97 (762)
-+++++|+|.| .|.+|+.+++.|.+. |+ +|.++++..
T Consensus 31 kL~~~~VlIvG-aGGlGs~va~~La~a--GVg~ItlvD~D~ 68 (340)
T 3rui_A 31 IIKNTKVLLLG-AGTLGCYVSRALIAW--GVRKITFVDNGT 68 (340)
T ss_dssp HHHTCEEEEEC-CSHHHHHHHHHHHHT--TCCEEEEECCCB
T ss_pred HHhCCEEEEEC-CCHHHHHHHHHHHHc--CCCEEEEecCCE
Confidence 45789999999 588999999999998 88 888887754
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=88.11 E-value=2.7 Score=44.47 Aligned_cols=107 Identities=14% Similarity=0.053 Sum_probs=63.9
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
.++|.|+|| |.+|..++..|+..+..-+|.++++.. ++++... ..+-+. . +.....+.+..+|
T Consensus 6 ~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~------~~~~~~~-~dl~~~----~--~~~~~~~~i~~~~--- 68 (316)
T 1ldn_A 6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANE------SKAIGDA-MDFNHG----K--VFAPKPVDIWHGD--- 68 (316)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSH------HHHHHHH-HHHHHH----T--TSSSSCCEEEECC---
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCc------chHHHHH-hhHHHH----h--hhcCCCeEEEcCc---
Confidence 468999998 999999999998873212899998853 2222110 001110 0 1111234433221
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCcc-ccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFD-DYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~-~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
.+.++++|+||-+|+..... ....+.+..|..-.+.+.+.+.+.
T Consensus 69 ----------~~al~~aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~ 113 (316)
T 1ldn_A 69 ----------YDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS 113 (316)
T ss_dssp ----------GGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHhCCCCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHH
Confidence 12468999999998865422 122345667877778888877775
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=88.04 E-value=0.95 Score=47.73 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=31.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
++|++|+|.|++|.+|+.++..|++. +.+|++..|.
T Consensus 163 l~Gk~vvVIG~s~iVG~p~A~lL~~~--gAtVtv~~~~ 198 (300)
T 4a26_A 163 MAGKRAVVLGRSNIVGAPVAALLMKE--NATVTIVHSG 198 (300)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCC
Confidence 57999999999999999999999998 7778877763
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=87.85 E-value=1.2 Score=47.58 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=30.5
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKK 98 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~ 98 (762)
-.|.+|||+|| |-+|...+..+... +.+|++..|+..
T Consensus 178 ~~g~~VlV~Ga-G~vG~~~~qlak~~--Ga~Vi~~~~~~~ 214 (360)
T 1piw_A 178 GPGKKVGIVGL-GGIGSMGTLISKAM--GAETYVISRSSR 214 (360)
T ss_dssp STTCEEEEECC-SHHHHHHHHHHHHH--TCEEEEEESSST
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHC--CCEEEEEcCCHH
Confidence 36899999999 99999988766666 678999998654
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.83 E-value=1 Score=48.62 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=28.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLR 95 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR 95 (762)
-.|.+|||+||+|-+|...+..+... +.+|++..+
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~--Ga~Vi~~~~ 216 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAW--DAHVTAVCS 216 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEeC
Confidence 36789999999999999988766665 678888774
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=87.74 E-value=0.87 Score=47.67 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=30.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLR 95 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR 95 (762)
++|++|+|.|++|.+|+.++..|++. +.+|++..|
T Consensus 159 l~Gk~vvVvGrs~iVG~plA~lL~~~--gAtVtv~hs 193 (286)
T 4a5o_A 159 LYGMDAVVVGASNIVGRPMALELLLG--GCTVTVTHR 193 (286)
T ss_dssp CTTCEEEEECTTSTTHHHHHHHHHHT--TCEEEEECT
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHC--CCeEEEEeC
Confidence 47999999999999999999999998 677777655
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=87.69 E-value=0.63 Score=49.61 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=29.5
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRP 96 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~ 96 (762)
.|.+|||+|| |.+|...+..+... +. +|++.+|+
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~--Ga~~Vi~~~~~ 201 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKAS--GAYPVIVSEPS 201 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHT--TCCSEEEECSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHc--CCCEEEEECCC
Confidence 7899999999 99999999877666 77 88998885
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=87.66 E-value=0.95 Score=47.65 Aligned_cols=35 Identities=11% Similarity=0.199 Sum_probs=29.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLR 95 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR 95 (762)
-.|.+|||+||+|-+|...+.-+... +.+|++..+
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~--Ga~vi~~~~ 185 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQK--GTTVITTAS 185 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHc--CCEEEEEec
Confidence 46899999999999999998777666 678888775
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=87.45 E-value=1.4 Score=43.71 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=27.9
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
.+++|.|.| +|.+|+.++..|.+. +++|++..|.
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~--g~~V~~~~r~ 60 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGS--GFKVVVGSRN 60 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 357899999 899999999999988 5567888885
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=87.32 E-value=1.1 Score=46.90 Aligned_cols=35 Identities=26% Similarity=0.525 Sum_probs=28.8
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEE-eCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYIL-LRP 96 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~L-vR~ 96 (762)
..+|.|.||+|-+|+.+++.+.+. +++++... +|+
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~-~~~eLvg~vd~~ 56 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRR-KDVELCAVLVRK 56 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTC-SSEEEEEEBCCT
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecC
Confidence 458999999999999999998887 78866555 443
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=86.81 E-value=7.5 Score=40.83 Aligned_cols=103 Identities=13% Similarity=0.044 Sum_probs=63.3
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
..++|.|+|| |.+|..++..|+..+.-.+|.++++... ......++.. . . ..++.. .+|
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~---~~g~a~dl~~---------~---~--~~~i~~-t~d-- 71 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEG---TKGATMDLEI---------F---N--LPNVEI-SKD-- 71 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC--------CHHHHHH---------H---T--CTTEEE-ESC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcc---hHHHHHHHhh---------h---c--CCCeEE-eCC--
Confidence 3478999995 9999999999998843228899888653 1111112210 0 0 124443 233
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
+ +.++++|+||-+|+.......-.+....|+.-.+.+++.+.+.
T Consensus 72 ----------~-~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~ 115 (303)
T 2i6t_A 72 ----------L-SASAHSKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHY 115 (303)
T ss_dssp ----------G-GGGTTCSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------H-HHHCCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3368999999999764322333456777888888888888775
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=86.53 E-value=4.4 Score=42.65 Aligned_cols=105 Identities=17% Similarity=0.128 Sum_probs=61.5
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHH-HHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLE-EIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~-~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.++|.|.|| |.+|..++..|++. ++ .|.+.++.... .+... ++... . .. .....++... .|
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~--g~~~V~l~D~~~~~---~~~~~~~l~~~-----~--~~--~~~~~~i~~t-~d- 66 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKD--NLADVVLFDIAEGI---PQGKALDITHS-----M--VM--FGSTSKVIGT-DD- 66 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHH--TCCEEEEECSSSSH---HHHHHHHHHHH-----H--HH--HTCCCCEEEE-SC-
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC--CCceEEEEeCCchH---HHHHHHHHHhh-----h--hh--cCCCcEEEEC-CC-
Confidence 468999997 99999999999998 56 78888886421 11110 11000 0 00 0011222221 22
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
+ +.++++|+||-+++...- .....+....|....+.+++...+.
T Consensus 67 -----------~-~a~~~aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~ 111 (317)
T 2ewd_A 67 -----------Y-ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKY 111 (317)
T ss_dssp -----------G-GGGTTCSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHH
T ss_pred -----------H-HHhCCCCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHH
Confidence 3 345789999999875432 2222234556777777777777664
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=86.47 E-value=0.92 Score=47.24 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=31.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
.+|++|+|.|++|.+|+.++..|++. +.+|++..|.
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~--gAtVtv~~~~ 183 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNR--NYTVSVCHSK 183 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 68999999999999999999999998 7777777653
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=86.32 E-value=0.86 Score=50.40 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=30.3
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
.-.|++|||+||+|-+|...+..+... +.+|++.+++
T Consensus 218 ~~~g~~VlV~GasG~iG~~a~qla~~~--Ga~vi~~~~~ 254 (447)
T 4a0s_A 218 MKQGDIVLIWGASGGLGSYAIQFVKNG--GGIPVAVVSS 254 (447)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCC
Confidence 346899999999999999988776666 7788888864
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=86.16 E-value=1.7 Score=45.44 Aligned_cols=36 Identities=17% Similarity=0.361 Sum_probs=31.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~ 97 (762)
.++++|+|.|+ |..|+.++..|.+. ++ +|++..|..
T Consensus 120 ~~~k~vlvlGa-GGaaraia~~L~~~--G~~~v~v~nRt~ 156 (282)
T 3fbt_A 120 IKNNICVVLGS-GGAARAVLQYLKDN--FAKDIYVVTRNP 156 (282)
T ss_dssp CTTSEEEEECS-STTHHHHHHHHHHT--TCSEEEEEESCH
T ss_pred ccCCEEEEECC-cHHHHHHHHHHHHc--CCCEEEEEeCCH
Confidence 46899999996 78899999999998 77 899999964
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=86.06 E-value=1.3 Score=48.12 Aligned_cols=36 Identities=17% Similarity=0.165 Sum_probs=31.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
..|++|+|+|+ |-+|..+++.+... +.+|++.+|..
T Consensus 166 l~g~~V~ViG~-G~iG~~~a~~a~~~--Ga~V~~~d~~~ 201 (377)
T 2vhw_A 166 VEPADVVVIGA-GTAGYNAARIANGM--GATVTVLDINI 201 (377)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHT--TCEEEEEESCH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence 57899999998 99999999998887 66889998853
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=85.91 E-value=0.93 Score=48.81 Aligned_cols=75 Identities=17% Similarity=0.094 Sum_probs=48.7
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.|.+|||+|+ |-+|...+..+... +.+|++..|+... ++.+.+ ..... .+ .|..
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~--Ga~Vi~~~~~~~~------~~~~~~--------------~lGa~-~v--~~~~ 240 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAF--GSKVTVISTSPSK------KEEALK--------------NFGAD-SF--LVSR 240 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHT--TCEEEEEESCGGG------HHHHHH--------------TSCCS-EE--EETT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHC--CCEEEEEeCCHHH------HHHHHH--------------hcCCc-eE--Eecc
Confidence 6899999996 99999999877666 6788998886422 211110 00111 11 2443
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAAT 166 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~ 166 (762)
+ .+.+.++..++|+||++++.
T Consensus 241 ~------~~~~~~~~~~~D~vid~~g~ 261 (366)
T 1yqd_A 241 D------QEQMQAAAGTLDGIIDTVSA 261 (366)
T ss_dssp C------HHHHHHTTTCEEEEEECCSS
T ss_pred C------HHHHHHhhCCCCEEEECCCc
Confidence 3 23566666789999999885
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=85.78 E-value=0.69 Score=49.11 Aligned_cols=70 Identities=13% Similarity=0.069 Sum_probs=51.2
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
.++|+|.|+ |-+|+.+++.|.+. +. |.++.+.+ ++++ +. ..++.++.||.++
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~--g~-v~vid~~~------~~~~-~~-----------------~~~~~~i~gd~~~ 166 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGS--EV-FVLAEDEN------VRKK-VL-----------------RSGANFVHGDPTR 166 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGS--CE-EEEESCGG------GHHH-HH-----------------HTTCEEEESCTTS
T ss_pred cCCEEEECC-cHHHHHHHHHHHhC--Cc-EEEEeCCh------hhhh-HH-----------------hCCcEEEEeCCCC
Confidence 457999996 99999999999887 66 77776643 2222 11 1467899999998
Q ss_pred CCCCCCHHHHHhh-cCCccEEEEcc
Q psy7542 141 PDLGISAEDRQML-SETIHIVYHIA 164 (762)
Q Consensus 141 ~~LGLs~~~l~~l-~~~vDiViH~A 164 (762)
++ .++++ ++++|.|+-+.
T Consensus 167 ~~------~L~~a~i~~a~~vi~~~ 185 (336)
T 1lnq_A 167 VS------DLEKANVRGARAVIVDL 185 (336)
T ss_dssp HH------HHHHTCSTTEEEEEECC
T ss_pred HH------HHHhcChhhccEEEEcC
Confidence 66 67766 78899998654
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=85.67 E-value=4.4 Score=42.95 Aligned_cols=106 Identities=14% Similarity=0.045 Sum_probs=62.1
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.++|.|+|| |.+|..++..|+.. +. .|.++++.... .+.....+.+.... . ....++... .|
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~--g~~~v~L~Di~~~~---l~~~~~~l~~~~~~-----~---~~~~~i~~t-~d-- 66 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQK--NLGDVVLFDIVKNM---PHGKALDTSHTNVM-----A---YSNCKVSGS-NT-- 66 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHT--TCCEEEEECSSSSH---HHHHHHHHHTHHHH-----H---TCCCCEEEE-CC--
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC--CCCeEEEEeCCHHH---HHHHHHHHHhhhhh-----c---CCCcEEEEC-CC--
Confidence 368999998 99999999999887 55 78888775421 12111111111100 0 011222221 22
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCc-ccc-----HHHHHHHhHHHHHHHHHHHHHc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRF-DDY-----MQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~-----l~~~~~~NV~GT~~LLelA~~~ 194 (762)
+ +.++++|+||-+++...- ... -.+....|+.-.+.+.+...+.
T Consensus 67 ----------~-~al~~aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~ 116 (322)
T 1t2d_A 67 ----------Y-DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 116 (322)
T ss_dssp ----------G-GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH
T ss_pred ----------H-HHhCCCCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 346899999999976532 111 2245666777777787777665
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=85.51 E-value=1.6 Score=46.56 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=30.1
Q ss_pred CC-CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCC
Q psy7542 60 EH-KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKK 98 (762)
Q Consensus 60 ~g-k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~ 98 (762)
.| .+|||+||+|-+|...+.-+... +.+|++.+++..
T Consensus 166 ~g~~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~ 203 (364)
T 1gu7_A 166 PGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRP 203 (364)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCT
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHHC--CCEEEEEecCcc
Confidence 57 99999999999999888766555 778888887553
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=85.33 E-value=2.2 Score=45.59 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=26.8
Q ss_pred CEEEEECCCChhHHHH-HHHHH-HcCCCc-EEEEEeCCCC
Q psy7542 62 KNIFITGASGFVGKVL-LEKIL-RTCENV-KIYILLRPKK 98 (762)
Q Consensus 62 k~VLVTGATGFLG~~L-vekLL-~~gp~v-~V~~LvR~~~ 98 (762)
.+|||+|| |-+|... +. |+ +. -+. +|+++.++..
T Consensus 174 ~~VlV~Ga-G~vG~~a~iq-la~k~-~Ga~~Vi~~~~~~~ 210 (357)
T 2b5w_A 174 SSAFVLGN-GSLGLLTLAM-LKVDD-KGYENLYCLGRRDR 210 (357)
T ss_dssp CEEEEECC-SHHHHHHHHH-HHHCT-TCCCEEEEEECCCS
T ss_pred CEEEEECC-CHHHHHHHHH-HHHHH-cCCcEEEEEeCCcc
Confidence 89999999 9999988 65 45 44 377 4999998653
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=85.32 E-value=6.7 Score=41.32 Aligned_cols=105 Identities=16% Similarity=0.055 Sum_probs=62.8
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|.|.|| |.+|..++..|+..+..-+|.+.+|.. ++++.+.. .+.... + ......+...|
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~------~~~~~~~~-----~l~~~~--~-~~~~~~i~~~d---- 61 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDK------KRAEGDAL-----DLIHGT--P-FTRRANIYAGD---- 61 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSH------HHHHHHHH-----HHHHHG--G-GSCCCEEEECC----
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCCh------HHHHHHHH-----HHHhhh--h-hcCCcEEEeCC----
Confidence 57999998 999999999999984311889988853 22222110 000000 1 11112222112
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCcc-ccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFD-DYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~-~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
. +.++++|+||-++...... ..-.+....|+.-.+.+++...+.
T Consensus 62 --------~-~~~~~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~ 106 (319)
T 1a5z_A 62 --------Y-ADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY 106 (319)
T ss_dssp --------G-GGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------H-HHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 2357899999998865432 123356777888888888887764
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=84.98 E-value=0.73 Score=50.82 Aligned_cols=70 Identities=10% Similarity=0.060 Sum_probs=49.1
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.+.+++|+|.| .|.+|+.+++.+.+. |++|++++..... +..++ .+ ..+.+|
T Consensus 32 ~~~~~~IlIlG-~G~lg~~~~~aa~~l--G~~v~v~d~~~~~--p~~~~---------------------ad--~~~~~~ 83 (419)
T 4e4t_A 32 ILPGAWLGMVG-GGQLGRMFCFAAQSM--GYRVAVLDPDPAS--PAGAV---------------------AD--RHLRAA 83 (419)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHT--TCEEEEECSCTTC--HHHHH---------------------SS--EEECCC
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHC--CCEEEEECCCCcC--chhhh---------------------CC--EEEECC
Confidence 46889999999 589999999999888 7888888754332 11111 11 234566
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEE
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVY 161 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiVi 161 (762)
..|.+ .+.++++++|+|+
T Consensus 84 ~~d~~------~l~~~a~~~D~V~ 101 (419)
T 4e4t_A 84 YDDEA------ALAELAGLCEAVS 101 (419)
T ss_dssp TTCHH------HHHHHHHHCSEEE
T ss_pred cCCHH------HHHHHHhcCCEEE
Confidence 66543 6777778899987
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=84.87 E-value=5.6 Score=41.84 Aligned_cols=103 Identities=15% Similarity=0.079 Sum_probs=64.1
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE-eecCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN-GDVAV 140 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~-GDl~~ 140 (762)
+|.|+|| |.+|..++..|+.. +. +|.++++..... +....++.... ......+.+.. +|
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~--~l~el~L~Di~~~~~--~g~~~dl~~~~-----------~~~~~~~~i~~t~d--- 61 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMR--GYDDLLLIARTPGKP--QGEALDLAHAA-----------AELGVDIRISGSNS--- 61 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHH--TCSCEEEECSSTTHH--HHHHHHHHHHH-----------HHHTCCCCEEEESC---
T ss_pred CEEEECc-CHHHHHHHHHHHhC--CCCEEEEEcCChhhH--HHHHHHHHHhh-----------hhcCCCeEEEECCC---
Confidence 4889998 99999999998877 55 688888864211 11111111100 00112222322 33
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
+ +.++++|+||-+|+...- ...-.+....|+.-.+.+++...+.
T Consensus 62 ---------~-~a~~~aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~ 106 (308)
T 2d4a_B 62 ---------Y-EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAY 106 (308)
T ss_dssp ---------G-GGGTTCSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------H-HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 246899999999887542 2333456788988889998888775
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=84.84 E-value=3.7 Score=37.94 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=29.3
Q ss_pred hccCCCEEEEECCC---ChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 57 ATLEHKNIFITGAS---GFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 57 ~~~~gk~VLVTGAT---GFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
.+++.++|.|.|+| |-+|..+++.|++. +++|+...+.
T Consensus 10 ~l~~p~~IavIGaS~~~g~~G~~~~~~L~~~--G~~V~~vnp~ 50 (138)
T 1y81_A 10 NSKEFRKIALVGASKNPAKYGNIILKDLLSK--GFEVLPVNPN 50 (138)
T ss_dssp ----CCEEEEETCCSCTTSHHHHHHHHHHHT--TCEEEEECTT
T ss_pred cccCCCeEEEEeecCCCCCHHHHHHHHHHHC--CCEEEEeCCC
Confidence 34577899999997 99999999999987 6678877654
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=84.57 E-value=1.1 Score=50.22 Aligned_cols=71 Identities=27% Similarity=0.373 Sum_probs=52.1
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
+.|+|+|.|+ |-+|.+|++.|... ++.|.++.+.+ ++++++.+ .-.+..+.||.+
T Consensus 2 ~~M~iiI~G~-G~vG~~la~~L~~~--~~~v~vId~d~------~~~~~~~~----------------~~~~~~i~Gd~~ 56 (461)
T 4g65_A 2 NAMKIIILGA-GQVGGTLAENLVGE--NNDITIVDKDG------DRLRELQD----------------KYDLRVVNGHAS 56 (461)
T ss_dssp CCEEEEEECC-SHHHHHHHHHTCST--TEEEEEEESCH------HHHHHHHH----------------HSSCEEEESCTT
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHC--CCCEEEEECCH------HHHHHHHH----------------hcCcEEEEEcCC
Confidence 4688999995 99999999999887 66778887652 34433311 125778999999
Q ss_pred CCCCCCCHHHHHhh-cCCccEEE
Q psy7542 140 VPDLGISAEDRQML-SETIHIVY 161 (762)
Q Consensus 140 ~~~LGLs~~~l~~l-~~~vDiVi 161 (762)
+++ .++++ ++++|.++
T Consensus 57 ~~~------~L~~Agi~~ad~~i 73 (461)
T 4g65_A 57 HPD------VLHEAGAQDADMLV 73 (461)
T ss_dssp CHH------HHHHHTTTTCSEEE
T ss_pred CHH------HHHhcCCCcCCEEE
Confidence 876 45554 57899988
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=83.78 E-value=6.2 Score=41.89 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=61.3
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchH-HHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSR-ERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~-eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|.|.|| |.+|..++..|... ++ .|.+.++........ ..+.+... .. ....++... .|
T Consensus 15 ~kI~ViGa-G~vG~~iA~~la~~--g~~~V~L~Di~~~~l~~~~~~l~~~~~---------~~---~~~~~i~~t-~d-- 76 (328)
T 2hjr_A 15 KKISIIGA-GQIGSTIALLLGQK--DLGDVYMFDIIEGVPQGKALDLNHCMA---------LI---GSPAKIFGE-NN-- 76 (328)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT--TCCEEEEECSSTTHHHHHHHHHHHHHH---------HH---TCCCCEEEE-SC--
T ss_pred CEEEEECC-CHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHHHHhHhh---------cc---CCCCEEEEC-CC--
Confidence 68999998 99999999888887 55 788888864321110 01111100 00 011233321 22
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccC-ccccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVR-FDDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~-f~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
+ +.++++|+||-+++... ....-.+....|+.-.+.+.+...+.
T Consensus 77 ----------~-~al~~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~ 121 (328)
T 2hjr_A 77 ----------Y-EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKY 121 (328)
T ss_dssp ----------G-GGGTTCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHH
T ss_pred ----------H-HHHCCCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHH
Confidence 3 34689999999987543 22221234566777777887777664
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=83.74 E-value=1.6 Score=47.14 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=48.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.+++|+|.| .|.+|+.+++.+.+. |++|++++........ ...+ ..+.+|.
T Consensus 10 ~~~~~IlIlG-~G~lg~~la~aa~~l--G~~viv~d~~~~~p~~-----------------------~~ad--~~~~~~~ 61 (377)
T 3orq_A 10 KFGATIGIIG-GGQLGKMMAQSAQKM--GYKVVVLDPSEDCPCR-----------------------YVAH--EFIQAKY 61 (377)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHT--TCEEEEEESCTTCTTG-----------------------GGSS--EEEECCT
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHC--CCEEEEEECCCCChhh-----------------------hhCC--EEEECCC
Confidence 4689999999 688999999999998 8888888875432110 0111 3456777
Q ss_pred CCCCCCCCHHHHHhhcCCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVY 161 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiVi 161 (762)
.|.+ .+.++++.+|+|.
T Consensus 62 ~d~~------~l~~~~~~~dvi~ 78 (377)
T 3orq_A 62 DDEK------ALNQLGQKCDVIT 78 (377)
T ss_dssp TCHH------HHHHHHHHCSEEE
T ss_pred CCHH------HHHHHHHhCCcce
Confidence 6644 6777777889873
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=83.58 E-value=9 Score=39.90 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=62.4
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCc--EEEEEeCCCCCcchHHHHHH-HhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENV--KIYILLRPKKNKNSRERLEE-IFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v--~V~~LvR~~~~~~~~eRl~~-ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.++|.|.|| |.+|..++..|.+. +. +|.+++|.. ++++. .++ +.... + ....+.+...+
T Consensus 7 ~mkI~IiGa-G~vG~~~a~~l~~~--g~~~~V~l~d~~~------~~~~~~~~~------~~~~~--~-~~~~~~v~~~~ 68 (319)
T 1lld_A 7 PTKLAVIGA-GAVGSTLAFAAAQR--GIAREIVLEDIAK------ERVEAEVLD------MQHGS--S-FYPTVSIDGSD 68 (319)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHT--TCCSEEEEECSSH------HHHHHHHHH------HHHTG--G-GSTTCEEEEES
T ss_pred CCEEEEECC-CHHHHHHHHHHHhC--CCCCEEEEEeCCh------hHHHHHHHH------HHhhh--h-hcCCeEEEeCC
Confidence 478999997 99999999999988 44 888888853 22221 000 00000 0 11122222210
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
+ . ..++++|+||-++..... ...-.+....|+...+.+++...+.
T Consensus 69 --~---------~-~~~~~aD~Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~ 114 (319)
T 1lld_A 69 --D---------P-EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV 114 (319)
T ss_dssp --C---------G-GGGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --C---------H-HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1 235789999999875432 2334456777888888888777664
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=83.41 E-value=1.1 Score=45.99 Aligned_cols=34 Identities=21% Similarity=0.462 Sum_probs=29.8
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPK 97 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~ 97 (762)
++ +|+|.|+ |.+|+.++..|++. ++ +|++..|..
T Consensus 108 ~~-~vliiGa-Gg~a~ai~~~L~~~--G~~~I~v~nR~~ 142 (253)
T 3u62_A 108 KE-PVVVVGA-GGAARAVIYALLQM--GVKDIWVVNRTI 142 (253)
T ss_dssp CS-SEEEECC-SHHHHHHHHHHHHT--TCCCEEEEESCH
T ss_pred CC-eEEEECc-HHHHHHHHHHHHHc--CCCEEEEEeCCH
Confidence 67 8999995 99999999999998 67 889999963
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=83.34 E-value=1.1 Score=48.99 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=30.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEE--eCCCCCc
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYIL--LRPKKNK 100 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~L--vR~~~~~ 100 (762)
++..+|.|.||||++|..|++.|.+. |.++|..+ .++..++
T Consensus 17 M~~~kVaIvGAtG~vG~ell~lL~~h-p~~el~~l~aS~~saGk 59 (381)
T 3hsk_A 17 MSVKKAGVLGATGSVGQRFILLLSKH-PEFEIHALGASSRSAGK 59 (381)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTC-SSEEEEEEEECTTTTTS
T ss_pred CCccEEEEECCCChHHHHHHHHHHcC-CCceEEEeeccccccCC
Confidence 35578999999999999999977665 77788655 3444444
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=83.27 E-value=0.6 Score=44.17 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=44.9
Q ss_pred CChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCCCCCCHHH
Q psy7542 70 SGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPDLGISAED 149 (762)
Q Consensus 70 TGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~LGLs~~~ 149 (762)
+|.++...++.|.+. |++|++..|............+.. .....+...+.+|++++. .++
T Consensus 25 s~~p~~a~a~~La~~--Ga~vvi~~r~~~e~~~~~~~~~~~--------------~~~G~~~~~i~~Dv~~~~----~~~ 84 (157)
T 3gxh_A 25 SGLPNEQQFSLLKQA--GVDVVINLMPDSSKDAHPDEGKLV--------------TQAGMDYVYIPVDWQNPK----VED 84 (157)
T ss_dssp EBCCCHHHHHHHHHT--TCCEEEECSCTTSTTSCTTHHHHH--------------HHTTCEEEECCCCTTSCC----HHH
T ss_pred cCCCCHHHHHHHHHc--CCCEEEECCCcccccccccHHHHH--------------HHcCCeEEEecCCCCCCC----HHH
Confidence 356889999999987 776666667543321100011110 111245677888998872 234
Q ss_pred HHhhc-------CCccEEEEcccc
Q psy7542 150 RQMLS-------ETIHIVYHIAAT 166 (762)
Q Consensus 150 l~~l~-------~~vDiViH~AA~ 166 (762)
+++++ .+ |++|||||.
T Consensus 85 v~~~~~~i~~~~G~-dVLVnnAgg 107 (157)
T 3gxh_A 85 VEAFFAAMDQHKGK-DVLVHCLAN 107 (157)
T ss_dssp HHHHHHHHHHTTTS-CEEEECSBS
T ss_pred HHHHHHHHHhcCCC-CEEEECCCC
Confidence 44332 34 999999985
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.21 E-value=1.9 Score=46.43 Aligned_cols=36 Identities=11% Similarity=0.136 Sum_probs=28.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
-.|.+|||+|| |-+|...+..+... +.+|+++.++.
T Consensus 193 ~~g~~VlV~Ga-G~vG~~aiqlak~~--Ga~Vi~~~~~~ 228 (369)
T 1uuf_A 193 GPGKKVGVVGI-GGLGHMGIKLAHAM--GAHVVAFTTSE 228 (369)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHT--TCEEEEEESSG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence 36889999998 78999988766555 67889988764
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=83.20 E-value=1.9 Score=44.03 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=26.6
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEE-EeCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYI-LLRP 96 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~-LvR~ 96 (762)
.++|.|+|+ |.+|+.+++.+.+. ++ ++.. ++|.
T Consensus 3 MmkI~ViGa-GrMG~~i~~~l~~~-~~-eLva~~d~~ 36 (243)
T 3qy9_A 3 SMKILLIGY-GAMNQRVARLAEEK-GH-EIVGVIENT 36 (243)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHT-TC-EEEEEECSS
T ss_pred ceEEEEECc-CHHHHHHHHHHHhC-CC-EEEEEEecC
Confidence 478999999 99999999999887 45 6665 4554
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=83.14 E-value=2.5 Score=44.56 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=30.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLR 95 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR 95 (762)
..|++|+|.|+++.+|+.++..|++. +.+|++..+
T Consensus 163 l~gk~vvVIG~s~iVG~p~A~lL~~~--gAtVtv~hs 197 (301)
T 1a4i_A 163 IAGRHAVVVGRSKIVGAPMHDLLLWN--NATVTTCHS 197 (301)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHT--TCEEEEECT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhC--CCeEEEEEC
Confidence 47999999999999999999999988 667776654
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=82.98 E-value=1.5 Score=48.79 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=29.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
-.|.+|||+||+|-+|...+..+... +.+|++++++
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~--Ga~vi~~~~~ 262 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAG--GANPICVVSS 262 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEECC
Confidence 46889999999999999888766665 7788888864
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=82.97 E-value=1.2 Score=48.99 Aligned_cols=36 Identities=25% Similarity=0.500 Sum_probs=31.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~ 97 (762)
..|++|+|.|+ |-+|..++..|... |+ +|++..|..
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~--G~~~V~v~~r~~ 201 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDR--GVRAVLVANRTY 201 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHH--CCSEEEEECSSH
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHC--CCCEEEEEeCCH
Confidence 57999999997 99999999999888 77 899998863
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=82.76 E-value=7.3 Score=43.14 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=54.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcc-hHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKN-SRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~-~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++++|+|.|. |-.|..+++.|.+. |.+|.+.++...... ..++|++ ..+.+..|.
T Consensus 7 ~~~k~v~viG~-G~sG~s~A~~l~~~--G~~V~~~D~~~~~~~~~~~~L~~--------------------~gi~~~~g~ 63 (451)
T 3lk7_A 7 FENKKVLVLGL-ARSGEAAARLLAKL--GAIVTVNDGKPFDENPTAQSLLE--------------------EGIKVVCGS 63 (451)
T ss_dssp TTTCEEEEECC-TTTHHHHHHHHHHT--TCEEEEEESSCGGGCHHHHHHHH--------------------TTCEEEESC
T ss_pred cCCCEEEEEee-CHHHHHHHHHHHhC--CCEEEEEeCCcccCChHHHHHHh--------------------CCCEEEECC
Confidence 47899999998 77899988888887 778888887542111 1112211 356666654
Q ss_pred cCCCCCCCCHHHHHhhcCC-ccEEEEcccccCccccHHHHHHHh
Q psy7542 138 VAVPDLGISAEDRQMLSET-IHIVYHIAATVRFDDYMQTYVFLN 180 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~-vDiViH~AA~v~f~~~l~~~~~~N 180 (762)
-.+ .++++ +|.||.+.|....+..+..+.+.+
T Consensus 64 ~~~-----------~~~~~~~d~vv~spgi~~~~p~~~~a~~~g 96 (451)
T 3lk7_A 64 HPL-----------ELLDEDFCYMIKNPGIPYNNPMVKKALEKQ 96 (451)
T ss_dssp CCG-----------GGGGSCEEEEEECTTSCTTSHHHHHHHHTT
T ss_pred ChH-----------HhhcCCCCEEEECCcCCCCChhHHHHHHCC
Confidence 321 23345 899999888654443344444433
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=82.55 E-value=5.7 Score=41.57 Aligned_cols=106 Identities=8% Similarity=0.019 Sum_probs=60.7
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
++|.|.| +|.+|..++..|++.+...+|.+.+|.. ++++.+.. .+.... ......+.+...|
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~------~~~~~~~~-----~l~~~~--~~~~~~~~~~~~d---- 63 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANE------AKVKADQI-----DFQDAM--ANLEAHGNIVIND---- 63 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSH------HHHHHHHH-----HHHHHG--GGSSSCCEEEESC----
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCH------HHHHHHHH-----HHHhhh--hhcCCCeEEEeCC----
Confidence 5799999 8999999999999984213888888853 23322211 000000 1011223332222
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccC-----ccccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVR-----FDDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~-----f~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
+ +.++++|+||-++.... ....-.+....|+.-...+++...+.
T Consensus 64 --------~-~~~~~aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~ 112 (309)
T 1hyh_A 64 --------W-AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES 112 (309)
T ss_dssp --------G-GGGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT
T ss_pred --------H-HHhCCCCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 34578999999887533 11111234566777777888777664
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=82.10 E-value=4.6 Score=42.11 Aligned_cols=36 Identities=11% Similarity=0.226 Sum_probs=31.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
..|++|+|.|+ |-+|+.+++.|... +.+|++..|..
T Consensus 155 l~g~~v~IiG~-G~iG~~~a~~l~~~--G~~V~~~d~~~ 190 (300)
T 2rir_A 155 IHGSQVAVLGL-GRTGMTIARTFAAL--GANVKVGARSS 190 (300)
T ss_dssp STTSEEEEECC-SHHHHHHHHHHHHT--TCEEEEEESSH
T ss_pred CCCCEEEEEcc-cHHHHHHHHHHHHC--CCEEEEEECCH
Confidence 47899999995 99999999999887 67889988863
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=81.78 E-value=2.1 Score=45.83 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=29.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
-.|.+|||+| +|.+|...+..+... +.+|++..++.
T Consensus 188 ~~g~~VlV~G-~G~vG~~a~qla~~~--Ga~Vi~~~~~~ 223 (363)
T 3uog_A 188 RAGDRVVVQG-TGGVALFGLQIAKAT--GAEVIVTSSSR 223 (363)
T ss_dssp CTTCEEEEES-SBHHHHHHHHHHHHT--TCEEEEEESCH
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHc--CCEEEEEecCc
Confidence 3689999999 899998888766655 77899988753
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=81.75 E-value=4.4 Score=37.62 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=32.0
Q ss_pred hhhhccC-CCEEEEECCC---ChhHHHHHHHHHHcCCCcEEEEEe
Q psy7542 54 RISATLE-HKNIFITGAS---GFVGKVLLEKILRTCENVKIYILL 94 (762)
Q Consensus 54 ~i~~~~~-gk~VLVTGAT---GFLG~~LvekLL~~gp~v~V~~Lv 94 (762)
.+..+++ .++|.|.|++ |-+|..+++.|++. +++|+...
T Consensus 14 ~l~~ll~~p~~iaVVGas~~~g~~G~~~~~~l~~~--G~~v~~Vn 56 (144)
T 2d59_A 14 DIREILTRYKKIALVGASPKPERDANIVMKYLLEH--GYDVYPVN 56 (144)
T ss_dssp HHHHHHHHCCEEEEETCCSCTTSHHHHHHHHHHHT--TCEEEEEC
T ss_pred HHHHHHcCCCEEEEEccCCCCCchHHHHHHHHHHC--CCEEEEEC
Confidence 4667775 8999999998 89999999999987 56776654
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=81.58 E-value=1.8 Score=46.05 Aligned_cols=37 Identities=11% Similarity=0.260 Sum_probs=29.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKK 98 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~ 98 (762)
-.|.+|||+|| |-+|...+..+... +.+|++..++..
T Consensus 175 ~~g~~VlV~Ga-G~vG~~a~qla~~~--Ga~Vi~~~~~~~ 211 (348)
T 3two_A 175 TKGTKVGVAGF-GGLGSMAVKYAVAM--GAEVSVFARNEH 211 (348)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHT--TCEEEEECSSST
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHC--CCeEEEEeCCHH
Confidence 46899999997 99998888766555 678999888654
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=81.51 E-value=2 Score=45.91 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=25.5
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc-EEEEE
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYIL 93 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v-~V~~L 93 (762)
++|.|.||||.+|+.|++.|+++++.+ .++.+
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~ 33 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLY 33 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEe
Confidence 469999999999999999998654444 66554
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=81.32 E-value=3.2 Score=41.79 Aligned_cols=68 Identities=12% Similarity=0.205 Sum_probs=46.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++|++|||.| .|-+|...++.|++. +.+|+++..... +.++++.+ ..++.++.++.
T Consensus 29 L~gk~VLVVG-gG~va~~ka~~Ll~~--GA~VtVvap~~~-----~~l~~l~~----------------~~~i~~i~~~~ 84 (223)
T 3dfz_A 29 LKGRSVLVVG-GGTIATRRIKGFLQE--GAAITVVAPTVS-----AEINEWEA----------------KGQLRVKRKKV 84 (223)
T ss_dssp CTTCCEEEEC-CSHHHHHHHHHHGGG--CCCEEEECSSCC-----HHHHHHHH----------------TTSCEEECSCC
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHC--CCEEEEECCCCC-----HHHHHHHH----------------cCCcEEEECCC
Confidence 4799999999 589999999999999 555666665322 22333321 14677777766
Q ss_pred CCCCCCCCHHHHHhhcCCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVY 161 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiVi 161 (762)
...+ ++++|.||
T Consensus 85 ~~~d-----------L~~adLVI 96 (223)
T 3dfz_A 85 GEED-----------LLNVFFIV 96 (223)
T ss_dssp CGGG-----------SSSCSEEE
T ss_pred CHhH-----------hCCCCEEE
Confidence 5433 46799998
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=81.29 E-value=1.6 Score=48.37 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=29.9
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCC
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRP 96 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~ 96 (762)
.+++.+|+|.|+ |.+|+.+++.|.+. |+ +|.+++..
T Consensus 37 ~L~~~~VlvvG~-GGlGs~va~~La~a--Gvg~i~ivD~D 73 (434)
T 1tt5_B 37 LLDTCKVLVIGA-GGLGCELLKNLALS--GFRQIHVIDMD 73 (434)
T ss_dssp HHHTCCEEEECS-STHHHHHHHHHHHT--TCCCEEEEECC
T ss_pred HhcCCEEEEECc-CHHHHHHHHHHHHc--CCCEEEEEcCC
Confidence 347889999996 66999999999998 77 88888653
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=81.22 E-value=2.9 Score=45.17 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=31.4
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
.+.|++|+|.| +|.+|..+++.+.+. |++|++++...
T Consensus 11 ~~~~k~IlIlG-~G~~g~~la~aa~~~--G~~vi~~d~~~ 47 (389)
T 3q2o_A 11 ILPGKTIGIIG-GGQLGRMMALAAKEM--GYKIAVLDPTK 47 (389)
T ss_dssp CCTTSEEEEEC-CSHHHHHHHHHHHHT--TCEEEEEESST
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHc--CCEEEEEeCCC
Confidence 35789999999 678999999999988 88888887654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 762 | ||||
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-12 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 5e-12 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-10 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 2e-10 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-09 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 2e-09 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 2e-07 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 2e-07 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 3e-07 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 5e-07 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 6e-05 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 1e-04 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-04 | |
| d1xtea_ | 116 | d.189.1.1 (A:) Serine/threonine-protein kinase Sgk | 2e-04 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 3e-04 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 4e-04 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 6e-04 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 6e-04 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 7e-04 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 0.001 | |
| d1h6ha_ | 143 | d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo | 0.002 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 0.003 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 0.003 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 0.004 |
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 67.7 bits (164), Expect = 1e-12
Identities = 59/392 (15%), Positives = 116/392 (29%), Gaps = 53/392 (13%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
KNI +TG +GF+G + + +V + +L L A K
Sbjct: 3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL------------------DKLTYAGNKA 44
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNT 181
E+ + ++V + GD+A +L + H ++ + ++ N
Sbjct: 45 NLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAAESHNDNSL---NDPSPFIHTNF 101
Query: 182 RGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNEL 241
GT +L +++ V Y + E +
Sbjct: 102 IGTYTLLEAARKYDIRFHHVSTDEVYG-----------------DLPLREDLPGHGEGPG 144
Query: 242 ELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPGWTDNI 300
E E + + Y+ TK + +V ++ + G+ I S ++ I
Sbjct: 145 EKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQI 204
Query: 301 NGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360
GI +Y + D++ + GV +
Sbjct: 205 T-------NILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKN 257
Query: 361 NKDFQITWYDIIENGKD-IARNKVPLNNVLWYPGG---AMTNRGYEPVLKRVHNRIKKGF 416
NK+ + + KD + L Y G+ P +++
Sbjct: 258 NKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEE-- 315
Query: 417 DIFEYYTKNSWSFKNENLHALRNMMNEKEAIR 448
++YT N +K E N +E I+
Sbjct: 316 -TIQWYTDNQDWWKAEKEAVEANYAKTQEVIK 346
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.5 bits (159), Expect = 5e-12
Identities = 57/298 (19%), Positives = 98/298 (32%), Gaps = 72/298 (24%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
K I ITG +GFVG L +K++ V + + +E +E + +
Sbjct: 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF----FTGRKRNVEHWIGHENFELINHD 57
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQ---TYVF 178
E E + +YH+A+ +YM +
Sbjct: 58 VVEPLYIE---------------------------VDQIYHLASPASPPNYMYNPIKTLK 90
Query: 179 LNTRGTRDMLNLSKQMIHLQLFVYVSTA--YCHPKEKVLEEK--TYPPPVSPHNVIEKAE 234
NT GT +ML L+K+ + ST+ Y P+ E + P+ P
Sbjct: 91 TNTIGTLNMLGLAKR--VGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRAC----- 143
Query: 235 LLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPL 293
Y K + E + YM+ G+ + R
Sbjct: 144 ---------------------YDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHM- 181
Query: 294 PGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGN 351
++ + ++ A +G T+Y S F V LVNG++ + +S+P N
Sbjct: 182 ----NDGRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVN 235
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 61.3 bits (148), Expect = 1e-10
Identities = 58/399 (14%), Positives = 112/399 (28%), Gaps = 87/399 (21%)
Query: 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQ 122
I ITG +GF+G ++ I++ + + + E L +I +S
Sbjct: 2 KILITGGAGFIGSAVVRHIIK--NTQDTVVNIDKLTYAGNLESLSDISESN--------- 50
Query: 123 SESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQ---TYVFL 179
+ + D+ R V H+AA D + ++
Sbjct: 51 -------RYNFEHADICDSA----EITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIET 99
Query: 180 NTRGTRDMLNLSKQMIHLQL--------FVYVST--AYCHPKEKVLEEKTYPPPVSPHNV 229
N GT +L ++++ F ++ST Y E + P+
Sbjct: 100 NIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETT 159
Query: 230 IEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPI 288
+ Y+ +K + +V + G+P ++ S
Sbjct: 160 AYAPS-------------------SPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGP 200
Query: 289 WKDP---LPGWTDNI-NGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLL---- 340
+ P +P N G + G G I D+L V+ + +
Sbjct: 201 YHFPEKLIPLVILNALEGKPLPIYGKGDQIR-----------DWLYVEDHARALHMVVTE 249
Query: 341 ----STWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWY---PG 393
T+N + + T + I + Y G
Sbjct: 250 GKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAG 309
Query: 394 GAMTNRGYEPVLKRVHNRIKKGF-DIFEYYTKNSWSFKN 431
G++P+ + G E+Y N+ N
Sbjct: 310 KISRELGWKPLET-----FESGIRKTVEWYLANTQWVNN 343
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 61.0 bits (147), Expect = 2e-10
Identities = 51/321 (15%), Positives = 98/321 (30%), Gaps = 61/321 (19%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
K ITG +G G L E +L + +++ + R + N ER++ I+Q P
Sbjct: 2 KVALITGVTGQDGSYLAEFLLE--KGYEVHGIKRRASSFN-TERVDHIYQDPH------- 51
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNT 181
K GD++ ++ R++ + ++ + ++ + + ++
Sbjct: 52 ----TCNPKFHLHYGDLSDTSN-LTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDA 106
Query: 182 RGTRDMLNLSKQ--MIHLQLFVYVSTA--YCHPKEKVLEEKTYPPPVSPHNVIEKAELLS 237
GT +L + + F ST+ Y +E +E T P SP
Sbjct: 107 MGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSP----------- 155
Query: 238 KNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPGW 296
YA K + Y E+ GM P G
Sbjct: 156 ------------------YAVAKLYAYWITVNYRESYGMYACNGILFNHE----SPRRGE 193
Query: 297 TDNINGPTGLLIGAGKGIIRTMYC-DYSTCADFLPVDVLVNGVLL-------STWNFLSN 348
T T + +G+ +Y + + D+ V + + +
Sbjct: 194 TFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATG 253
Query: 349 PGNTMRVINLTANKDFQITWY 369
++R A I
Sbjct: 254 VQYSVRQFVEMAAAQLGIKLR 274
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 57.9 bits (139), Expect = 1e-09
Identities = 53/387 (13%), Positives = 103/387 (26%), Gaps = 86/387 (22%)
Query: 63 NIFITGASGFVGKVLLEKILRTCENVKIY---ILLRPKKNKNSRERLEEIFQSPLYEALK 119
+ +TG +GF+G + ++L I+L +R L + P
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADP------ 55
Query: 120 KEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFL 179
++ ++GD+ L + I + R +
Sbjct: 56 ----------RLRFVHGDIRDAGLLA---RELRGVDAIVHFAAESHVDRSIAGASVFTET 102
Query: 180 NTRGTRDMLNLSKQMIHLQL-FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSK 238
N +GT+ +L + ++ V + Y E + P SP
Sbjct: 103 NVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSP------------ 150
Query: 239 NELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPGWT 297
YA +K + V Y G+ I R G
Sbjct: 151 -----------------YAASKAGSDLVARAYHRTYGLDVRITRCCNNY--------GPY 185
Query: 298 DNINGPTGLLIG-AGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356
+ L + G +Y D + +++ D G+ L + G +
Sbjct: 186 QHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIAL-----VLAGGRAGEIY 240
Query: 357 NLTANKDFQITWYDIIENGKDIARNKVPL-NNVLWYPGG----------AMTNRGYEPVL 405
++ ++T ++ D V G GY P +
Sbjct: 241 HIGGGL--ELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQV 298
Query: 406 KRVHNRIKKGF-DIFEYYTKNSWSFKN 431
G +Y +N ++
Sbjct: 299 S-----FADGLARTVRWYRENRGWWEP 320
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.7 bits (138), Expect = 2e-09
Identities = 57/401 (14%), Positives = 118/401 (29%), Gaps = 61/401 (15%)
Query: 62 KNI-FITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKK 120
+N+ ITG +G G L E +L + +++ ++R + N R+E ++++P
Sbjct: 1 RNVALITGITGQDGSYLAEFLLE--KGYEVHGIVRRSSSFN-TGRIEHLYKNPQAH---- 53
Query: 121 EQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLN 180
I + GD+ + + I+ + + D + ++
Sbjct: 54 ------IEGNMKLHYGDLTDSTCLVKIINEVK-PTEIYNLGAQSHVKISFDLAEYTADVD 106
Query: 181 TRGTRDMLNLSKQ--MIHLQLFVYVSTA--YCHPKEKVLEEKTYPPPVSPHNVIEKAELL 236
GT +L+ K +I+ F ST+ Y +E +E T P SP
Sbjct: 107 GVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSP---------- 156
Query: 237 SKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPG 295
Y K +V + EA + + +
Sbjct: 157 -------------------YGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFV 197
Query: 296 WTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355
+ +G + + D+ V + L N
Sbjct: 198 TRKISRSVAKIYLGQLECFS---LGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATG 254
Query: 356 INLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPGGAMTNRGYEPVLKRVHNRIKKG 415
+ + + ++ I GK I N V + + R
Sbjct: 255 EVHSVREFVEKSFLHI---GKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQ 311
Query: 416 FDIFEYYTKNSWSFKNENLHALRNMMNEKEAIRYEIAMFRD 456
D + K +W + A ++ +E + ++ + R
Sbjct: 312 GDCTKAKQKLNWKPR----VAFDELV--REMVHADVELMRT 346
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 51.1 bits (121), Expect = 2e-07
Identities = 52/334 (15%), Positives = 92/334 (27%), Gaps = 51/334 (15%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
K ITG +GF+G LLE +L+ + V +N + + + + K
Sbjct: 17 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRN-LDEVRSLVSEKQWSNFKFI 75
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNT 181
Q + + + + + + R + T N
Sbjct: 76 QGDIRNLDDCNN----------------ACAGVDYVLHQAALGSVPRSINDPITSNATNI 119
Query: 182 RGTRDMLNLSKQMIHLQLFVYVST-AYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNE 240
G +ML ++ S+ Y E T P+SP
Sbjct: 120 DGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSP-------------- 165
Query: 241 LELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPGWTDN 299
YA TK + E + G + LR + +DP +
Sbjct: 166 ---------------YAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAV 210
Query: 300 INGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359
I T +I +G + D T DF ++ V LL+ L +
Sbjct: 211 IPKWTSSMI---QGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDARNQVYNIAVGG 267
Query: 360 ANKDFQITWYDIIENGKDIARNKVPLNNVLWYPG 393
Q+ + ++ + G
Sbjct: 268 RTSLNQLFFALRDGLAENGVSYHREPVYRDFREG 301
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.2 bits (121), Expect = 2e-07
Identities = 54/400 (13%), Positives = 117/400 (29%), Gaps = 86/400 (21%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
K + +TG +G++G + +++ + + L +S RLE + +
Sbjct: 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLS-NSTYDSVARLEVLTK---------- 50
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQ---TYVF 178
+ D+ ++ I V H A + Q Y
Sbjct: 51 -------HHIPFYEVDLCDRK----GLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYH 99
Query: 179 LNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTY--PPPVSPHNVIEKAELL 236
N GT +L L +Q + S + P+ P N
Sbjct: 100 NNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNP------- 152
Query: 237 SKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---GMPCMILRPSIIIPIWKDPL 293
Y +TK E ++ + + ILR I L
Sbjct: 153 -------------------YGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGL 193
Query: 294 PGWTDNINGPTGLLIG------AGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347
G ++ G L+ G+ ++ D D P+ ++ V L+ + +
Sbjct: 194 IG--EDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAA 251
Query: 348 NPGNTMRVINLTANKDFQI------TWYDIIENGKDIARNKVPLNNVLWYPGG------- 394
N +++ + T +++ + +P G
Sbjct: 252 LQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAK 311
Query: 395 ---AMTNRGYEPVLKRVHNRIKKGF-DIFEYYTKNSWSFK 430
A ++ L+ ++ D++++ T+N + ++
Sbjct: 312 PDRAKRELKWQTELQ-----VEDSCKDLWKWTTENPFGYQ 346
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 50.9 bits (120), Expect = 3e-07
Identities = 40/330 (12%), Positives = 93/330 (28%), Gaps = 32/330 (9%)
Query: 64 IFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQS 123
+ ITG GF+G L L ++ ++ L K ++ L +
Sbjct: 3 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSL-------------- 48
Query: 124 ESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRG 183
++GD+ + + M H+ +A T D+ + +N G
Sbjct: 49 -----GNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDF-EINVGG 102
Query: 184 TRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELEL 243
T ++L +Q +Y ST + + + + + + ++
Sbjct: 103 TLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQ----- 157
Query: 244 LKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNINGP 303
L P G + + + + S+
Sbjct: 158 ----LDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQ 213
Query: 304 TGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKD 363
+ I G T+ + D L + +++ + N GN +
Sbjct: 214 KAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTI---V 270
Query: 364 FQITWYDIIENGKDIARNKVPLNNVLWYPG 393
++ ++ + +D + N+
Sbjct: 271 NSLSLLELFKLLEDYCNIDMRFTNLPVRES 300
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 49.9 bits (118), Expect = 5e-07
Identities = 37/341 (10%), Positives = 93/341 (27%), Gaps = 73/341 (21%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
+ +FI G G VG + ++ + + ++LR + N + +++ E
Sbjct: 3 QRVFIAGHRGMVGSAIRRQLEQRGDVE---LVLRTRDELNLLD------SRAVHDFFASE 53
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNT 181
+ + + + V + Y +++ N
Sbjct: 54 RID------------------------------QVYLAAAKVGGIVANNTYPADFIYQNM 83
Query: 182 RGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVL---EEKTYPPPVSPHNVIEKAELLSK 238
++++ + Q + +++ ++ +PK E + + P N
Sbjct: 84 MIESNIIHAAHQN-DVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTN---------- 132
Query: 239 NELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPGWT 297
YA K + Y G + P+ + + P +
Sbjct: 133 ---------------EPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNS 177
Query: 298 DNIN--GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355
I A K ++ + +FL VD + + +
Sbjct: 178 HVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQP 237
Query: 356 INLTANKDFQITWY--DIIENGKDIARNKVPLNNVLWYPGG 394
+ N + ++ + + K + P G
Sbjct: 238 MLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDG 278
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 43.5 bits (101), Expect = 6e-05
Identities = 39/320 (12%), Positives = 85/320 (26%), Gaps = 55/320 (17%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
++ +TG +G G L + +L V + R + RL E+
Sbjct: 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTR---WRLRELGIEG-------- 49
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNT 181
+ +GD+A + + + ++ + + + T ++
Sbjct: 50 --------DIQYEDGDMADACS-VQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDG 100
Query: 182 RGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVL--EEKTYPPPVSPHNVIEKAELLSKN 239
G +L +Q F ST+ + +E T P SP
Sbjct: 101 LGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSP------------- 147
Query: 240 ELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPGWTD 298
Y K + Y E+ G+ +
Sbjct: 148 ----------------YGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRK 191
Query: 299 NINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358
+ + +G + + + D+ V + L ++ +
Sbjct: 192 VTDAVARIKLGKQQELR---LGNVDAKRDWGFAGDYVEAMWLMLQQDKADDYVVATGVTT 248
Query: 359 TANKDFQITWYDIIENGKDI 378
T QI + + + +D
Sbjct: 249 TVRDMCQIAFEHVGLDYRDF 268
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 42.5 bits (98), Expect = 1e-04
Identities = 43/347 (12%), Positives = 92/347 (26%), Gaps = 23/347 (6%)
Query: 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKK 120
H + + G +G++G + +LR N + I+ + +E
Sbjct: 2 HMRVLVCGGAGYIGSHFVRALLRD-TNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60
Query: 121 EQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLN 180
GDV D R + + + A Y N
Sbjct: 61 GPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNN 120
Query: 181 -----TRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAEL 235
+L+ ++I E SP + +++L
Sbjct: 121 VVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKL 180
Query: 236 LSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPG 295
+++ + + G + + + + +IPI +
Sbjct: 181 IAERMIRDCAEA------YGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMS 234
Query: 296 WTDNINGPTGLLIGAGKGIIRTMYCDYSTCA-----DFLPVDVLVNGVLLSTWNFLSNPG 350
T + + DY T D++ V L + +L+
Sbjct: 235 DIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGP 294
Query: 351 NTM----RVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPG 393
N V NL ++ + ++IE + + +P+ G
Sbjct: 295 NDKSKYFSVFNLGTSRG--YSVREVIEVARKTTGHPIPVRECGRREG 339
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 42.3 bits (98), Expect = 2e-04
Identities = 45/342 (13%), Positives = 102/342 (29%), Gaps = 60/342 (17%)
Query: 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQ 122
+ +TG SG++G ++L+ +V I L K +++
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSV-------------LPVIERLG 48
Query: 123 SESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQ---TYVFL 179
+ F + GD+ L + I V H A + +Q Y
Sbjct: 49 GKHPTF-----VEGDIRNEAL----MTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN 99
Query: 180 NTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKN 239
N GT +++ + +++ F++ S+A + + + P +P +
Sbjct: 100 NVNGTLRLISAMRAA-NVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSP---------- 148
Query: 240 ELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--GMPCMILRPSIIIPIWKDPLPGWT 297
Y +K + E ++T+ +A +LR + G
Sbjct: 149 ----------------YGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGED 192
Query: 298 DNING----PTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353
P + G+ ++ + D V ++ + L+ + ++
Sbjct: 193 PQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLAN 252
Query: 354 RVINLTAN--KDFQITWYDIIENGKDIARNKVPLNNVLWYPG 393
+ N + D++ V + G
Sbjct: 253 KPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREG 294
|
| >d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Serine/threonine-protein kinase Sgk3, Cisk species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.6 bits (92), Expect = 2e-04
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 518 KENC--ISVSGYRLI-ECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWH---SEGFGLGI 571
KE+C +S+ E +K + VY + V + + + V +RY+E + + F
Sbjct: 1 KESCPSVSIPSSDEHREKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMA 60
Query: 572 LDGKGKYAYAPPYSRTLKQNRRQ 594
L K + + + RR
Sbjct: 61 LKIPAKRIFGDNFDPDFIKQRRA 83
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 41.0 bits (94), Expect = 3e-04
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQ 111
+ +TGASG G+++ +K+ + L+R + K ++F
Sbjct: 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFI 53
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (93), Expect = 4e-04
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKN 101
K++FI GASG G+VLL++IL K+ ++ R K +
Sbjct: 15 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFD 54
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 39.8 bits (91), Expect = 6e-04
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKN 101
K + + GA+G G+ LL++IL K+ R ++
Sbjct: 3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH 42
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 40.3 bits (93), Expect = 6e-04
Identities = 47/330 (14%), Positives = 97/330 (29%), Gaps = 59/330 (17%)
Query: 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALK 119
E+ I ITGA GF+ + ++ V + + E
Sbjct: 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHL--------- 64
Query: 120 KEQSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFL 179
D+ V + + + + ++ + ++
Sbjct: 65 ----------------VDLRVMENCLKVTE--GVDHVFNLAADMGGMGFIQSNHSVIMYN 106
Query: 180 NTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKN 239
NT + +M+ ++ ++ F Y S+A +P+ K LE S E
Sbjct: 107 NTMISFNMIEAARIN-GIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQ------ 159
Query: 240 ELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPGWTD 298
+ + K E + Y + G+ C I R I + G
Sbjct: 160 --------------DAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREK 205
Query: 299 NINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358
M+ D F +D V GVL T + +N+
Sbjct: 206 APAAFC--RKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLT------KSDFREPVNI 257
Query: 359 TANKDFQITWYDIIENGKDIARNKVPLNNV 388
+++ ++ ++ E K+P++++
Sbjct: 258 GSDEM--VSMNEMAEMVLSFEEKKLPIHHI 285
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 40.2 bits (92), Expect = 7e-04
Identities = 47/327 (14%), Positives = 88/327 (26%), Gaps = 43/327 (13%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
+ +TGA+GFV ++E++L K+ R L+K
Sbjct: 12 SLVLVTGANGFVASHVVEQLLE--HGYKVRGTARSASK---------------LANLQKR 54
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNT 181
+ D+ + + V HIA+ V F + V
Sbjct: 55 WDAKYPGRFETAVVEDMLKQG------AYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAI 108
Query: 182 RGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNEL 241
GT + L + ++ FV S+ K P + + L S ++
Sbjct: 109 GGTLNALRAAAATPSVKRFVLTSSTVSALIPK-------PNVEGIYLDEKSWNLESIDKA 161
Query: 242 ELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNIN 301
+ L + Q YA +K E ++M+ P +++ +
Sbjct: 162 KTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFT-LNAVLPNYTIGTIFDPETQSG 220
Query: 302 GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361
+G ++ G + VD+ R
Sbjct: 221 STSGWMMSLFNGEVSPALALMPPQYYVSAVDI------GLLHLGCLVLPQIERRRVYGTA 274
Query: 362 KDFQITWYDIIENGKDIARNKVPLNNV 388
F W ++ R P
Sbjct: 275 GTF--DWNTVLA----TFRKLYPSKTF 295
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 0.001
Identities = 44/390 (11%), Positives = 104/390 (26%), Gaps = 68/390 (17%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
+ + +TG +G++G + ++L + + F+
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVI------------DNFHNAFRGGGSLPESLR 50
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNT 181
+ + V D+ + + + A Y +N
Sbjct: 51 RVQELTGRSVEFEEMDILDQGALQRLFKKYS-FMAVIHFAGLKAVGESVQKPLDYYRVNL 109
Query: 182 RGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNEL 241
GT +L + K L S + + ++ +P
Sbjct: 110 TGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTG------------------ 151
Query: 242 ELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--GMPCMILRPSIIIPIWKDPLPGWTDN 299
N Y +K E ++ + +A ++LR G ++
Sbjct: 152 ---------GCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIG--ED 200
Query: 300 INGPTGLLIG------AGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353
G L+ G+ ++ + D V ++ V L+ + +
Sbjct: 201 PQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKE 260
Query: 354 RVINLTAN--KDFQITWYDIIENGKDIARNKVPLNNVLWYPGG----------AMTNRGY 401
+ N + +++ + + K+P V G A G+
Sbjct: 261 QCGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGW 320
Query: 402 EPVLKRVHNRIKKGF-DIFEYYTKNSWSFK 430
L + + D++ + +N F
Sbjct: 321 TAALG-----LDRMCEDLWRWQKQNPSGFG 345
|
| >d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: p40phox NADPH oxidase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (86), Expect = 0.002
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 644 PSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKFGPSRNQ---VLAFLGVNSKNSQPQP 698
P+ P K + ++ + R L Y+K + V F + +S+ P
Sbjct: 86 PTLPAKVYVGVKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYDSEQVP 143
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 38.1 bits (87), Expect = 0.003
Identities = 42/324 (12%), Positives = 80/324 (24%), Gaps = 50/324 (15%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
K ITG +G G L E +L + +++ L+R N N+ +R+ I+ P
Sbjct: 2 KIALITGITGQDGSYLTEFLLG--KGYEVHGLIRRSSNFNT-QRINHIYIDP-------- 50
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDD----YMQTYV 177
+ + D+ D E ++ V F+
Sbjct: 51 --HNVNKALMKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVAT 108
Query: 178 FLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLS 237
+ ++ + S+ E T P SP+
Sbjct: 109 GALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPY---------- 158
Query: 238 KNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPGW 296
A +KC Y EA G+ +
Sbjct: 159 -------------------AASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVT 199
Query: 297 TDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356
+ +G + + D+ V + L +
Sbjct: 200 RKITRALGRIKVGLQTKLF---LGNLQASRDWGFAGDYVEAMWLMLQQEKPDDYVVATEE 256
Query: 357 NLTANKDFQITWYDIIENGKDIAR 380
T + +++ + N KD
Sbjct: 257 GHTVEEFLDVSFGYLGLNWKDYVE 280
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 38.0 bits (86), Expect = 0.003
Identities = 21/266 (7%), Positives = 61/266 (22%), Gaps = 5/266 (1%)
Query: 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKE 121
+ + G G+ G + + V I L + + + +++ + +
Sbjct: 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW 61
Query: 122 QSESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHI--AATVRFDDYMQTYVFL 179
++ + + GD+ + + +H ++
Sbjct: 62 --KALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHN 119
Query: 180 NTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKN 239
N GT ++L K+ V + T + + E+ Y +
Sbjct: 120 NVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQAS 179
Query: 240 ELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDN 299
L + + + + + G +
Sbjct: 180 SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYG-VKTDETEMHEELRNRLDYDAVFGT 238
Query: 300 INGPTGLLIGAGKGIIRTMYCDYSTC 325
+ G + +
Sbjct: 239 ALNRFCVQAAVGHPLTVYGKGGQTRG 264
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 37.5 bits (85), Expect = 0.004
Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQ 111
H I ITGA+G +G+ + +++ +NV++ + + + + F
Sbjct: 1 HMKILITGANGQLGREIQKQLKG--KNVEVIPTDVQDLDITNVLAVNKFFN 49
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 762 | |||
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.98 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.98 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.98 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.97 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 99.97 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.97 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.97 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.97 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.97 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.97 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.96 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.96 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.96 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.95 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.95 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.95 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.92 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 99.91 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 99.9 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.87 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.87 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.87 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.86 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.86 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.85 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.74 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.6 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.58 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.57 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.57 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.56 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.55 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.54 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.54 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.54 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.54 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.54 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.53 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.53 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.53 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.53 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.53 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.53 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.52 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.51 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.51 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.51 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.51 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.5 | |
| d1xtea_ | 116 | Serine/threonine-protein kinase Sgk3, Cisk {Mouse | 99.5 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.49 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.48 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.48 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.47 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.46 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.46 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.45 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.45 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.45 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.44 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.44 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.43 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.43 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.42 | |
| d1h6ha_ | 143 | p40phox NADPH oxidase {Human (Homo sapiens) [TaxId | 99.42 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.42 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.41 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.4 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.39 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.39 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.38 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.37 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.36 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.36 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.34 | |
| d1kmda_ | 117 | Vam7p {Baker's yeast (Saccharomyces cerevisiae) [T | 99.34 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.34 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.32 | |
| d1kq6a_ | 140 | p47phox NADPH oxidase {Human (Homo sapiens) [TaxId | 99.31 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.31 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.3 | |
| d1ocsa_ | 132 | Sorting nexin grd19 {Baker's yeast (Saccharomyces | 99.28 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.28 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.27 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.27 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.25 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.24 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.22 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.18 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.18 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.13 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.05 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 98.96 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 98.91 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 98.85 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 98.82 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 98.76 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 98.54 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.06 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 96.94 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 96.76 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 96.74 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 96.7 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.63 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.24 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.24 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.24 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.13 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 96.08 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 95.97 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 95.88 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 95.85 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 95.85 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 95.78 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 95.77 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 95.72 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 95.68 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.33 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 95.28 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 94.94 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 94.93 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 94.86 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 94.7 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 94.69 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 94.63 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 94.57 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 94.51 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 93.78 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 93.67 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 93.38 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.29 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 92.92 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 92.79 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 92.76 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 92.72 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 92.59 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 92.47 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 92.11 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 91.77 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 91.15 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 91.14 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 90.49 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 89.66 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 89.51 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 89.39 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 89.1 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 88.46 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 88.39 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 88.09 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 88.04 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 87.86 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 87.51 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 87.17 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 87.17 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 86.57 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 86.28 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 86.09 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 86.06 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 86.02 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 85.78 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 85.76 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 85.75 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 85.54 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 85.37 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 84.95 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 84.9 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 83.79 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 83.34 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 83.18 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 82.96 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 81.92 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 81.69 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 81.47 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 80.34 |
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.5e-33 Score=300.95 Aligned_cols=263 Identities=17% Similarity=0.113 Sum_probs=194.2
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|.|||||||||||++|+++|++. +.+|++++|..... ..+|++.+.... .....+++++.||+++.
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~--g~~V~~~~r~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~~~Dl~d~ 67 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEK--GYEVHGIKRRASSF-NTERVDHIYQDP-----------HTCNPKFHLHYGDLSDT 67 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEECC---------------------------------CCEEECCCCSSCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--cCEEEEEECCCccc-chhhHHHHHhhh-----------hhcCCCeEEEEeecCCH
Confidence 78999999999999999999999 67889999965432 123443332211 22346899999999986
Q ss_pred CCCCCHHHHHhhcCCc--cEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEEEeCCcccC--CC
Q psy7542 142 DLGISAEDRQMLSETI--HIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVYVSTAYCHP--KE 212 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~v--DiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~vSSay~~~--~~ 212 (762)
. +++++++++ |+|||+||..... ++....+++|+.||.+||++|++. ++.++|||+||+.+++ ..
T Consensus 68 ~------~~~~~~~~~~~d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~ 141 (357)
T d1db3a_ 68 S------NLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQE 141 (357)
T ss_dssp H------HHHHHHHHHCCSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCS
T ss_pred H------HHHHHHhccCCCEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCC
Confidence 6 788888754 9999999986543 445668899999999999999986 2445899999985543 44
Q ss_pred cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCC
Q psy7542 213 KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKD 291 (762)
Q Consensus 213 ~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~e 291 (762)
.+++|+....|. +.|+.||+++|.++..+++. +++++++||++|||+...
T Consensus 142 ~~~~E~~~~~P~-----------------------------~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~ 192 (357)
T d1db3a_ 142 IPQKETTPFYPR-----------------------------SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRG 192 (357)
T ss_dssp SSBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSC
T ss_pred CCcCCCCCCCCC-----------------------------ChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCC
Confidence 578887655554 78999999999999999887 999999999999998643
Q ss_pred CCCCCCCCCCCchHHHHHHhcCC-eEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHH
Q psy7542 292 PLPGWTDNINGPTGLLIGAGKGI-IRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYD 370 (762)
Q Consensus 292 P~pGWidn~~gp~~li~~~~~G~-l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~e 370 (762)
+.. ........+.....|. .....|++++.+|+++|+|+|++++.++.... +++||++++ +++|+.|
T Consensus 193 ~~~----~~~~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~~~~~~~~~------~~~yni~sg--~~~s~~~ 260 (357)
T d1db3a_ 193 ETF----VTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQ------PEDFVIATG--VQYSVRQ 260 (357)
T ss_dssp TTS----HHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTTSSSS------CCCEEECCC--CCEEHHH
T ss_pred cCC----CchHHHHHHHHHHhCCCceEEECCCCeeecceeechHHHHHHHHHhCCC------CCeEEECCC--CceehHH
Confidence 210 0001122333444444 34567899999999999999999999886542 479999999 8999999
Q ss_pred HHHHHHHhhccCCCC
Q psy7542 371 IIENGKDIARNKVPL 385 (762)
Q Consensus 371 l~~~i~~~~G~~~P~ 385 (762)
+++.+.+..|...++
T Consensus 261 ~~~~~~~~~g~~~~~ 275 (357)
T d1db3a_ 261 FVEMAAAQLGIKLRF 275 (357)
T ss_dssp HHHHHHHTTTEEEEE
T ss_pred HHHHHHHHhCCcccc
Confidence 999999999755443
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=4e-32 Score=289.76 Aligned_cols=289 Identities=16% Similarity=0.164 Sum_probs=222.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc----EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV----KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v----~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
|+|||||||||||++|+++|++.++.+ +|+.+.+....... ..+.. .....++.++.+|
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~-~~~~~----------------~~~~~~~~~~~~d 63 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR-ANLAP----------------VDADPRLRFVHGD 63 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG-GGGGG----------------GTTCTTEEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccH-hHhhh----------------hhcCCCeEEEEec
Confidence 689999999999999999999997654 67777665432211 00000 1234689999999
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC--C
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK--E 212 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~--~ 212 (762)
+.+.. .........|+|+|+|+..... ......+++|+.||.+++++|++. ++++|||+||+.+++. .
T Consensus 64 ~~~~~------~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~-~~~~~I~~Ss~~~yg~~~~ 136 (322)
T d1r6da_ 64 IRDAG------LLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDA-GVGRVVHVSTNQVYGSIDS 136 (322)
T ss_dssp TTCHH------HHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHT-TCCEEEEEEEGGGGCCCSS
T ss_pred cccch------hhhccccccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHc-CCceEEEeecceeecCCCC
Confidence 98865 6777788999999999876543 334567899999999999999997 7899999999966554 3
Q ss_pred cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCC
Q psy7542 213 KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKD 291 (762)
Q Consensus 213 ~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~e 291 (762)
.+++|+.+..|. +.|+.||..+|.+++.++++ +++++++||+.|||+...
T Consensus 137 ~~~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~ 187 (322)
T d1r6da_ 137 GSWTESSPLEPN-----------------------------SPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQH 187 (322)
T ss_dssp SCBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCC
T ss_pred CCCCCCCCCCCC-----------------------------CHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCC
Confidence 467787655544 78999999999999999877 999999999999998643
Q ss_pred CCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHH
Q psy7542 292 PLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDI 371 (762)
Q Consensus 292 P~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el 371 (762)
+ + .-...++..+..|....+++++++.+|++||+|+|++++.++.+... +++||++++ +++++.|+
T Consensus 188 ~-----~--~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai~~~~~~~~~-----~~~~ni~~~--~~~s~~e~ 253 (322)
T d1r6da_ 188 P-----E--KLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGRA-----GEIYHIGGG--LELTNREL 253 (322)
T ss_dssp T-----T--SHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCCT-----TCEEEECCC--CEEEHHHH
T ss_pred c-----C--cHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHHHHHHHHhCCCC-----CCeeEEeec--ccchhHHH
Confidence 2 1 12345667778888777889999999999999999999999988664 689999999 99999999
Q ss_pred HHHHHHhhccCCCCc-cccccCCcc------cc---c-cCCCchhhHHHHHHhhhhhh
Q psy7542 372 IENGKDIARNKVPLN-NVLWYPGGA------MT---N-RGYEPVLKRVHNRIKKGFDI 418 (762)
Q Consensus 372 ~~~i~~~~G~~~P~~-~~~w~p~~~------~~---~-lG~kP~l~~l~~ki~~~~~~ 418 (762)
++.+.+.+|.+.+.. .....+... .. . +||+|+. .+.+.|.+..++
T Consensus 254 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~~-~~eegI~~~i~w 310 (322)
T d1r6da_ 254 TGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQV-SFADGLARTVRW 310 (322)
T ss_dssp HHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCCS-CHHHHHHHHHHH
T ss_pred HHHHHHHhCCCccceeecCCCCCCCceeeeCHHHHHHHHCCCCCC-CHHHHHHHHHHH
Confidence 999999997665432 111222111 11 1 8999987 678888775443
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.8e-33 Score=294.11 Aligned_cols=284 Identities=22% Similarity=0.229 Sum_probs=208.6
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++. +.+|++++|...+.. +.+.. .....++....+|+.+.
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~--g~~V~~~d~~~~~~~--~~~~~----------------~~~~~~~d~~~~~~~~~ 61 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDNFFTGRK--RNVEH----------------WIGHENFELINHDVVEP 61 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCSSCCG--GGTGG----------------GTTCTTEEEEECCTTSC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeCCCcCCH--HHHHH----------------hcCCCceEEEehHHHHH
Confidence 78999999999999999999998 677888887443221 00100 01124556666665443
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC--Ccccc
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK--EKVLE 216 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~--~~~i~ 216 (762)
+..++|+|||+||.+.. ..+....+++|+.||.+++++|++. ++ +|||+||..+++. ..++.
T Consensus 62 -----------~~~~~d~VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~-~~-k~I~~SS~~vy~~~~~~~~~ 128 (312)
T d2b69a1 62 -----------LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV-GA-RLLLASTSEVYGDPEVHPQS 128 (312)
T ss_dssp -----------CCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-TC-EEEEEEEGGGGBSCSSSSBC
T ss_pred -----------HHcCCCEEEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHc-CC-cEEEEEChheecCCCCCCCC
Confidence 44689999999998763 3445678899999999999999997 44 7999999866543 34566
Q ss_pred cccCC--CCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCC
Q psy7542 217 EKTYP--PPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPL 293 (762)
Q Consensus 217 E~~~~--~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~ 293 (762)
|+... .|..|. +.|+.||.++|.++..+++. |++++++||+.|||+...+-
T Consensus 129 e~~~~~~~~~~p~--------------------------~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~ 182 (312)
T d2b69a1 129 EDYWGHVNPIGPR--------------------------ACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMN 182 (312)
T ss_dssp TTCCCBCCSSSTT--------------------------HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTT
T ss_pred ccccCCCCCCCCc--------------------------cHHHHHHHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCC
Confidence 65432 233332 68999999999999998887 99999999999999865431
Q ss_pred CCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHH
Q psy7542 294 PGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIE 373 (762)
Q Consensus 294 pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~ 373 (762)
. ......++..+..|....+++++.+.+|++||+|+|++++.++.... +++||++++ .++++.++++
T Consensus 183 ~-----~~~i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~~~~~~------~~~~n~~~~--~~~~~~~~~~ 249 (312)
T d2b69a1 183 D-----GRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNV------SSPVNLGNP--EEHTILEFAQ 249 (312)
T ss_dssp C-----CCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSSC------CSCEEESCC--CEEEHHHHHH
T ss_pred C-----ccHHHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHHHhhcc------CCceEecCC--cccchhhHHH
Confidence 1 11123566777888888889999999999999999999998886543 468999999 9999999999
Q ss_pred HHHHhhccCCCCccccccCCc----ccc--c----cCCCchhhHHHHHHhhhhhh
Q psy7542 374 NGKDIARNKVPLNNVLWYPGG----AMT--N----RGYEPVLKRVHNRIKKGFDI 418 (762)
Q Consensus 374 ~i~~~~G~~~P~~~~~w~p~~----~~~--~----lG~kP~l~~l~~ki~~~~~~ 418 (762)
.+++.+|.+.++......+.. ... . +||+|+. .+.+.|.+..++
T Consensus 250 ~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~~-~l~~~I~~~i~w 303 (312)
T d2b69a1 250 LIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVV-PLEEGLNKAIHY 303 (312)
T ss_dssp HHHHHHTCCCCEEEECCCTTCCCCCCBCCHHHHHHHCCCCCS-CHHHHHHHHHHH
T ss_pred HHHHHhCCCCceEECCCCCCCCCeeeECHHHHHHHHCCCCCC-CHHHHHHHHHHH
Confidence 999999766554422211111 110 0 7999987 677777765443
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.6e-31 Score=287.18 Aligned_cols=301 Identities=20% Similarity=0.191 Sum_probs=225.7
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcc-hHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKN-SRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~-~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.|+|||||||||||++|+++|++. |.+|++++|...+.. ..+++..+.. .....+++++.+|+
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~--g~~V~~~d~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~d~ 79 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKL--DQKVVGLDNFATGHQRNLDEVRSLVS-------------EKQWSNFKFIQGDI 79 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCSSCCHHHHHHHHHHSC-------------HHHHTTEEEEECCT
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHC--cCEEEEEECCCCcchhhHHHHHHhhh-------------hcccCCeeEEeecc
Confidence 5689999999999999999999999 678899998654332 1222222211 11236789999999
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC--Cc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK--EK 213 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~--~~ 213 (762)
.+.. .........++|+|+||.... ..+....+++|+.||.+++++|++. ++++|||+||+.+++. ..
T Consensus 80 ~d~~------~~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~-~~~~~i~~SS~~vyg~~~~~ 152 (341)
T d1sb8a_ 80 RNLD------DCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA-KVQSFTYAASSSTYGDHPGL 152 (341)
T ss_dssp TSHH------HHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHT-TCSEEEEEEEGGGGTTCCCS
T ss_pred cccc------ccccccccccccccccccccccccccCccchhheeehhHHHHHHHHHhc-CCceEEEcccceeeCCCCCC
Confidence 8765 577777889999999997653 3444568899999999999999998 7899999999866554 34
Q ss_pred ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCC
Q psy7542 214 VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDP 292 (762)
Q Consensus 214 ~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP 292 (762)
+++|+.+..|. +.|+.||.++|+++..+++. +++++|+||+.|||+...|
T Consensus 153 ~~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~ 203 (341)
T d1sb8a_ 153 PKVEDTIGKPL-----------------------------SPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDP 203 (341)
T ss_dssp SBCTTCCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCC
T ss_pred CccCCCCCCCC-----------------------------CcchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCC
Confidence 67887665554 78999999999999998877 9999999999999998765
Q ss_pred CCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHH
Q psy7542 293 LPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDII 372 (762)
Q Consensus 293 ~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~ 372 (762)
...+ . .-...++..+..|....+.+++.+.+|++||+|+|.|+..++...... .+++||++++ +++|+.|++
T Consensus 204 ~~~~-~--~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~~~a~~~~~~~~~~~---~~~~~~~~~~--~~~si~~i~ 275 (341)
T d1sb8a_ 204 NGAY-A--AVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDA---RNQVYNIAVG--GRTSLNQLF 275 (341)
T ss_dssp CSTT-C--CHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGGG---CSEEEEESCS--CCEEHHHHH
T ss_pred CCch-h--hhHHHHHHHHHcCCceEEcCCCCEEEEEEEEeccchhhhhhhhccccc---cceeeeeccc--ccchHHHHH
Confidence 3211 0 011235566778888888999999999999999999999888765432 4689999998 899999999
Q ss_pred HHHHHhhccCC-CCcc-cc---ccCC--------c-cccc-cCCCchhhHHHHHHhhhhhhhc
Q psy7542 373 ENGKDIARNKV-PLNN-VL---WYPG--------G-AMTN-RGYEPVLKRVHNRIKKGFDIFE 420 (762)
Q Consensus 373 ~~i~~~~G~~~-P~~~-~~---w~p~--------~-~~~~-lG~kP~l~~l~~ki~~~~~~l~ 420 (762)
+.+.+..|.+. +... .. ..+. . .+.. +||+|++ .+.+.+.+..+++.
T Consensus 276 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~p~~-sl~~gi~~ti~wy~ 337 (341)
T d1sb8a_ 276 FALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPKY-DVSAGVALAMPWYI 337 (341)
T ss_dssp HHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHHHTCCCCCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccccccccccCCCCCCcCeeeeCHHHHHHHHCCCcCC-CHHHHHHHHHHHHH
Confidence 99999886432 1110 00 0011 0 0111 8999988 68888888666443
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.98 E-value=4e-31 Score=286.13 Aligned_cols=290 Identities=18% Similarity=0.185 Sum_probs=216.3
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+|||||||||||++|+++|+++ +.+|++++|.+.... ........+..+|+.
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~--g~~V~~~d~~~~~~~-----------------------~~~~~~~~~~~~D~~ 68 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHE--GHYVIASDWKKNEHM-----------------------TEDMFCDEFHLVDLR 68 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCCSSS-----------------------CGGGTCSEEEECCTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--cCEEEEEeCCCccch-----------------------hhhcccCcEEEeech
Confidence 6789999999999999999999999 678888887654321 122345678889988
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCc----cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc--
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRF----DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK-- 213 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f----~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~-- 213 (762)
+.+ ++..+++++|+|||+|+.... ..........|+.||.+++++|++. ++++|||+||+.+++...
T Consensus 69 ~~~------~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~-~vk~~i~~SS~~~~~~~~~~ 141 (363)
T d2c5aa1 69 VME------NCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARIN-GIKRFFYASSACIYPEFKQL 141 (363)
T ss_dssp SHH------HHHHHHTTCSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHT-TCSEEEEEEEGGGSCGGGSS
T ss_pred hHH------HHHHHhhcCCeEeecccccccccccccccccccccccchhhHHHHhHHhh-Cccccccccccccccccccc
Confidence 755 677788999999999987765 4566778899999999999999997 899999999986665432
Q ss_pred ccccccC----CCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccC
Q psy7542 214 VLEEKTY----PPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPI 288 (762)
Q Consensus 214 ~i~E~~~----~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~ 288 (762)
+.+|... ..|.+| .+.|+.||.++|++++.+.+. |++++++||+.|||+
T Consensus 142 ~~~~~~~~~~e~~~~~p--------------------------~~~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~ 195 (363)
T d2c5aa1 142 ETTNVSLKESDAWPAEP--------------------------QDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGP 195 (363)
T ss_dssp SSSSCEECGGGGSSBCC--------------------------SSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECT
T ss_pred cccccccccccCCcCCC--------------------------CCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEecc
Confidence 2222110 011111 268999999999999998877 999999999999998
Q ss_pred CCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccH
Q psy7542 289 WKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITW 368 (762)
Q Consensus 289 ~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~ 368 (762)
...+...+ ..............+......+++.+.+||++++|+|.+++.++.... +++||++++ .++|+
T Consensus 196 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~~~~~~~~~~~~------~~~~ni~~~--~~~s~ 265 (363)
T d2c5aa1 196 FGTWKGGR--EKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDF------REPVNIGSD--EMVSM 265 (363)
T ss_dssp TSCCSSSC--CCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSSC------CSCEEECCC--CCEEH
T ss_pred CCcccccc--cccccccccccccccccccccCCCCeEEEEeehhHHHHHHHHHHhCCC------CCeEEEecC--CcccH
Confidence 75432211 111112333445556667788899999999999999999999887542 478999999 89999
Q ss_pred HHHHHHHHHhhccCCCCcccccc-------CCcccc-c-cCCCchhhHHHHHHhhhhhh
Q psy7542 369 YDIIENGKDIARNKVPLNNVLWY-------PGGAMT-N-RGYEPVLKRVHNRIKKGFDI 418 (762)
Q Consensus 369 ~el~~~i~~~~G~~~P~~~~~w~-------p~~~~~-~-lG~kP~l~~l~~ki~~~~~~ 418 (762)
.|+++.+.+..|.+.++...... .+.... . +||+|++ .+.+.+.+..++
T Consensus 266 ~~l~~~i~~~~g~~~~i~~~~~~~~~~~~~~d~ska~~~LGw~p~~-sleegi~~ti~w 323 (363)
T d2c5aa1 266 NEMAEMVLSFEEKKLPIHHIPGPEGVRGRNSDNNLIKEKLGWAPNM-RLKEGLRITYFW 323 (363)
T ss_dssp HHHHHHHHHTTTCCCCEEEECCCCCCSBCEECCHHHHHHHSCCCCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEeCCCCCCccccccCHHHHHHHhCCCCCC-CHHHHHHHHHHH
Confidence 99999999999877655422111 111110 1 8999987 888888775543
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.98 E-value=4.8e-31 Score=283.49 Aligned_cols=297 Identities=15% Similarity=0.161 Sum_probs=211.4
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcch-HHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNS-RERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~-~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
|+|||||||||||++|+++|++. +.+|++++|...+... ...++. ....++.++.+|+++
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~--g~~V~~~d~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~Dl~d 61 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQN--GHDVIILDNLCNSKRSVLPVIER-----------------LGGKHPTFVEGDIRN 61 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCSSCCTTHHHHHHH-----------------HHTSCCEEEECCTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEECCCCcchhhHHHHHh-----------------hcCCCCEEEEeecCC
Confidence 67999999999999999999999 6778888885544321 111111 113589999999998
Q ss_pred CCCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc--
Q psy7542 141 PDLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK-- 213 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~-- 213 (762)
.+ .+.++++ ++|+|||+||..... ++....+++|+.||.++|++|++. ++++||++||..++....
T Consensus 62 ~~------~l~~~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~-~v~~~i~~Ss~~vy~~~~~~ 134 (338)
T d1udca_ 62 EA------LMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAA-NVKNFIFSSSATVYGDQPKI 134 (338)
T ss_dssp HH------HHHHHHHHTTCSEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCSCCSS
T ss_pred HH------HHHHHHhccCCCEEEECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHh-CCCEEEecCcceEEcccccc
Confidence 76 6777776 789999999976543 244578999999999999999998 899999999986654332
Q ss_pred cccccc-CCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--CCCEEEEeeeeeccCCC
Q psy7542 214 VLEEKT-YPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--GMPCMILRPSIIIPIWK 290 (762)
Q Consensus 214 ~i~E~~-~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--glpv~IvRPs~V~G~~~ 290 (762)
...|.. ...|. +.|+.+|..+|+++.++... +++++++||+.|||+..
T Consensus 135 ~~~e~~~~~~p~-----------------------------~~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~ 185 (338)
T d1udca_ 135 PYVESFPTGTPQ-----------------------------SPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHP 185 (338)
T ss_dssp SBCTTSCCCCCS-----------------------------SHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCT
T ss_pred ccccccccCCCc-----------------------------chHHHHHhhhhHHHHHHHhhccCCeEEEEeeccEEeccC
Confidence 333321 11222 78999999999999876654 89999999999999976
Q ss_pred CCCCCCCCCCCCch---HHHHHHh--cCCeEEEeeC------CCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 291 DPLPGWTDNINGPT---GLLIGAG--KGIIRTMYCD------YSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 291 eP~pGWidn~~gp~---~li~~~~--~G~l~~i~gd------~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
.+.-|.... ..+. ..+.... .+....+.|+ +.+.+||++|+|++.++..+....... ..+++||++
T Consensus 186 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~v~D~~~~~~~~~~~~~~~--~~~~i~Ni~ 262 (338)
T d1udca_ 186 SGDMGEDPQ-GIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANK--PGVHIYNLG 262 (338)
T ss_dssp TSSSCCCCC-SSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHTTC--CEEEEEEES
T ss_pred CCCCCCCcc-ccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEEEeehhhhccccccccccc--cCcceeeec
Confidence 543332111 1111 1222222 2334455554 678899999999999988877754442 146899999
Q ss_pred CCCCCcccHHHHHHHHHHhhccCCCCccccccC--------Ccc-ccc-cCCCchhhHHHHHHhhhhhhh
Q psy7542 360 ANKDFQITWYDIIENGKDIARNKVPLNNVLWYP--------GGA-MTN-RGYEPVLKRVHNRIKKGFDIF 419 (762)
Q Consensus 360 s~~~~piT~~el~~~i~~~~G~~~P~~~~~w~p--------~~~-~~~-lG~kP~l~~l~~ki~~~~~~l 419 (762)
++ +++|+.|+++.+.+..|.+.+.....-.+ +.. ... +||+|.. .+.+.|.+..+++
T Consensus 263 ~~--~~~si~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgwkp~~-~l~egi~~ti~w~ 329 (338)
T d1udca_ 263 AG--VGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTR-TLDEMAQDTWHWQ 329 (338)
T ss_dssp CS--SCEEHHHHHHHHHHHHTSCCCEEEECCCTTCCSBCCBCCHHHHHHHCCCCCC-CHHHHHHHHHHHH
T ss_pred CC--CCCcHHHHHHHHHHHHCCCCceEECCCCCCCCCEeeECHHHHHHHHCCCcCC-CHHHHHHHHHHHH
Confidence 98 89999999999999998665543221111 111 111 8999987 7888888865543
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.98 E-value=7.8e-32 Score=293.14 Aligned_cols=299 Identities=17% Similarity=0.199 Sum_probs=212.5
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++.++. .|.++.+...... .+++.. .....+++++.+|++++
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~-vv~~~d~~~~~~~-~~~~~~----------------~~~~~~~~~~~~Dl~d~ 62 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQD-TVVNIDKLTYAGN-LESLSD----------------ISESNRYNFEHADICDS 62 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSC-EEEEEECCCTTCC-GGGGTT----------------TTTCTTEEEEECCTTCH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCcccc-HHHHHh----------------hhhcCCcEEEEccCCCH
Confidence 68999999999999999999999433 4556655433221 111211 11236899999999987
Q ss_pred CCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcC--------CccEEEEEeCCcc
Q psy7542 142 DLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMI--------HLQLFVYVSTAYC 208 (762)
Q Consensus 142 ~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~--------~lk~fV~vSSay~ 208 (762)
. .+..+++ ++|+||||||..... .+....+++|+.||.+++++|++.. +.++|||+||..+
T Consensus 63 ~------~l~~~~~~~~~d~VihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~v 136 (361)
T d1kewa_ 63 A------EITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEV 136 (361)
T ss_dssp H------HHHHHHHHHCCSEEEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGG
T ss_pred H------HHHHHHHhCCCCEEEECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEecccee
Confidence 6 6777665 589999999986543 2335688999999999999998752 3469999999866
Q ss_pred cCCCc--ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeee
Q psy7542 209 HPKEK--VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSII 285 (762)
Q Consensus 209 ~~~~~--~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V 285 (762)
++... +..|.....|...+. -....-+.|+.||.++|.++..+.+. +++++++||+.|
T Consensus 137 yg~~~~~~~~~~~~~~~~~~e~-------------------~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~v 197 (361)
T d1kewa_ 137 YGDLPHPDEVENSVTLPLFTET-------------------TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNN 197 (361)
T ss_dssp GCCCCCGGGSCTTSCCCCBCTT-------------------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEE
T ss_pred eCCCccCCccccccCCCCcccC-------------------CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCce
Confidence 65443 333332222221110 00011267999999999999999887 999999999999
Q ss_pred ccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCc
Q psy7542 286 IPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQ 365 (762)
Q Consensus 286 ~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~p 365 (762)
||+...+ ++ -...++..+..|....+++++++.+||++|+|+|++++.++..... +++||++++ ++
T Consensus 198 yGp~~~~-----~~--~i~~~i~~~~~g~~~~v~g~g~~~r~~i~v~D~a~ai~~~~~~~~~-----~~~~Ni~s~--~~ 263 (361)
T d1kewa_ 198 YGPYHFP-----EK--LIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKA-----GETYNIGGH--NE 263 (361)
T ss_dssp ESTTCCT-----TS--HHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCCT-----TCEEEECCC--CE
T ss_pred ECcCCCc-----Cc--HHHHHHHHHHcCCCcEEeCCCCeEEeCEEHHHHHHHHHHHHhcCCC-----CCeEEECCC--CC
Confidence 9986432 11 2345677788888888889999999999999999999999987654 679999999 89
Q ss_pred ccHHHHHHHHHHhhccCCCCc--------cccccC--------Ccc-ccc-cCCCchhhHHHHHHhhhhhh
Q psy7542 366 ITWYDIIENGKDIARNKVPLN--------NVLWYP--------GGA-MTN-RGYEPVLKRVHNRIKKGFDI 418 (762)
Q Consensus 366 iT~~el~~~i~~~~G~~~P~~--------~~~w~p--------~~~-~~~-lG~kP~l~~l~~ki~~~~~~ 418 (762)
+++.|+++.+.+..+...+.. .....| +.. ... +||+|+. .+.+.+.+..++
T Consensus 264 ~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~P~~-~l~e~i~~ti~w 333 (361)
T d1kewa_ 264 KKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLE-TFESGIRKTVEW 333 (361)
T ss_dssp EEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCSC-CHHHHHHHHHHH
T ss_pred cchHHHHhHhhhhcccccccccCcccceeecCCCCCCCceeeeCHHHHHHHHCCCCCC-CHHHHHHHHHHH
Confidence 999999999988764322111 001111 111 111 8999987 788888775443
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.97 E-value=8.5e-31 Score=282.18 Aligned_cols=307 Identities=18% Similarity=0.201 Sum_probs=218.9
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
.|+|||||||||||++|+++|++.+++++|+++++...... ..++. .....+++++.||+.+
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~-~~~~~-----------------~~~~~~i~~~~~Di~d 63 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGN-KANLE-----------------AILGDRVELVVGDIAD 63 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCC-GGGTG-----------------GGCSSSEEEEECCTTC
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCcccc-HHHHH-----------------HhhcCCeEEEEccCCC
Confidence 58899999999999999999999988888888775433221 01110 1234689999999988
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCccccc
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEE 217 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E 217 (762)
.+ .+..+...++.|+|+|+..... .+....+++|+.||.+++++|+.. + .++|++||..+++... ..|
T Consensus 64 ~~------~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~-~-~k~i~~ss~~vyg~~~-~~~ 134 (346)
T d1oc2a_ 64 AE------LVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKY-D-IRFHHVSTDEVYGDLP-LRE 134 (346)
T ss_dssp HH------HHHHHHTTCSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHH-T-CEEEEEEEGGGGCCBC-CGG
T ss_pred HH------HHHHHHhhhhhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhccc-c-ccccccccceEecccC-ccc
Confidence 66 7889999999999999987643 233568899999999999999987 3 5789999886654321 222
Q ss_pred ccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCCCCC
Q psy7542 218 KTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPGW 296 (762)
Q Consensus 218 ~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~pGW 296 (762)
+.+..+..+... . .........+.|+.||.++|.+++.+++. +++++|+||++|||+...+.
T Consensus 135 ~~~~~~~~~~~~------~--------~e~~~~~p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~--- 197 (346)
T d1oc2a_ 135 DLPGHGEGPGEK------F--------TAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIE--- 197 (346)
T ss_dssp GSTTTTCSTTSS------B--------CTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTT---
T ss_pred cccccccCcccc------c--------ccCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCcc---
Confidence 211111000000 0 00000012278999999999999998876 99999999999999864321
Q ss_pred CCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHH
Q psy7542 297 TDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGK 376 (762)
Q Consensus 297 idn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~ 376 (762)
.....++.....|....+++++++.+++++++|+|++++.++.+... ++.||++++ ++.++.++++.+.
T Consensus 198 ----~~~~~~i~~~~~~~~~~i~~~g~~~r~~i~v~D~a~a~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~i~ 266 (346)
T d1oc2a_ 198 ----KFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGRM-----GETYLIGAD--GEKNNKEVLELIL 266 (346)
T ss_dssp ----SHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHCCT-----TCEEEECCS--CEEEHHHHHHHHH
T ss_pred ----chhHHHHHHHHcCCceeEeCCCCccccccchhhHHHHHHHHHhhccc-----Ccccccccc--ccccchHHHHHHH
Confidence 12234555666787778899999999999999999999998887665 689999999 8999999999999
Q ss_pred HhhccCCC-Cccc--------cccCCccccc--cCCCchhhHHHHHHhhhhhhhcccccC
Q psy7542 377 DIARNKVP-LNNV--------LWYPGGAMTN--RGYEPVLKRVHNRIKKGFDIFEYYTKN 425 (762)
Q Consensus 377 ~~~G~~~P-~~~~--------~w~p~~~~~~--lG~kP~l~~l~~ki~~~~~~l~~f~~~ 425 (762)
+..|...+ +... .+..+..... +||+|++..+.+.+.+ .++||..+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~LGw~P~~t~l~e~i~~---ti~w~~~n 323 (346)
T d1oc2a_ 267 EKMGQPKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEE---TIQWYTDN 323 (346)
T ss_dssp HHTTCCTTCSEEECCCTTCCCBCCBCCHHHHHHHCCCCSCCCHHHHHHH---HHHHHHHT
T ss_pred HHhCCCCcceEECCCCCCCCceeeeCHHHHHHHHCCCCcCCCHHHHHHH---HHHHHHHH
Confidence 99865432 2111 1111111111 8999998788888887 44445443
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=2.1e-30 Score=277.90 Aligned_cols=266 Identities=16% Similarity=0.116 Sum_probs=195.9
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|++.+ ..+|+++++.+.... + .....+++++.||+++.
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g-~~~V~~ld~~~~~~~------~----------------~~~~~~~~~i~~Di~~~ 57 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLRED-HYEVYGLDIGSDAIS------R----------------FLNHPHFHFVEGDISIH 57 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHST-TCEEEEEESCCGGGG------G----------------GTTCTTEEEEECCTTTC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CCEEEEEeCCCcchh------h----------------hccCCCeEEEECccCCh
Confidence 689999999999999999999983 348999988653211 0 11236899999999986
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCccc---cHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC--Ccccc
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFDD---YMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK--EKVLE 216 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~~---~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~--~~~i~ 216 (762)
. +..+.+.+++|+|||+||...... ....++.+|+.||.+++++|.+. +. +++++||+.+++. .....
T Consensus 58 ~-----~~~~~~~~~~d~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~-~~-~~~~~ss~~~~~~~~~~~~~ 130 (342)
T d2blla1 58 S-----EWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKY-RK-RIIFPSTSEVYGMCSDKYFD 130 (342)
T ss_dssp S-----HHHHHHHHHCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHT-TC-EEEEECCGGGGBTCCCSSBC
T ss_pred H-----HHHHHHHhCCCccccccccccccccccCCccccccccccccccccccccc-cc-cccccccccccccccccccc
Confidence 5 123446678999999999876432 33468899999999999999987 44 5578888754433 22333
Q ss_pred cccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCCCC
Q psy7542 217 EKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPG 295 (762)
Q Consensus 217 E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~pG 295 (762)
|.....+.++. ...-+.|+.||.++|+++..+++. |++++++||+.++|+...+..|
T Consensus 131 ~~~~~~~~~~~----------------------~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~ 188 (342)
T d2blla1 131 EDHSNLIVGPV----------------------NKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNA 188 (342)
T ss_dssp TTTCCCBCCCT----------------------TCGGGHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTC
T ss_pred ccccccccccc----------------------CCCcchhhhcccchhhhhhhhhcccCceeEEeecccccccccccccc
Confidence 32222111110 000167999999999999999887 9999999999999997655432
Q ss_pred CCCCCC-CchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHH
Q psy7542 296 WTDNIN-GPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIEN 374 (762)
Q Consensus 296 Widn~~-gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~ 374 (762)
-..... ....++..+..|....+++++++.++++||+|+|+++..++.+.... ..+++||++++. +++|+.|+++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D~~~a~~~~~~~~~~~--~~g~~~Nig~~~-~~~t~~~l~~~ 265 (342)
T d2blla1 189 ARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNR--CDGEIINIGNPE-NEASIEELGEM 265 (342)
T ss_dssp SBSCBCHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGGGT--TTTEEEEECCTT-SEEEHHHHHHH
T ss_pred ccccccccchHHHHHHHhCCCccccCCCCeeeeecccccccceeeeehhhcccc--CCCeEEEEeccc-chhHHHHHHHH
Confidence 111111 12346677788988889999999999999999999999999875431 147899998762 46899999999
Q ss_pred HHHhhccC
Q psy7542 375 GKDIARNK 382 (762)
Q Consensus 375 i~~~~G~~ 382 (762)
+.+..|..
T Consensus 266 i~~~~~~~ 273 (342)
T d2blla1 266 LLASFEKH 273 (342)
T ss_dssp HHHHHHTC
T ss_pred HHHHhCCC
Confidence 99988644
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=9.6e-30 Score=269.81 Aligned_cols=288 Identities=16% Similarity=0.102 Sum_probs=212.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|++.|+++ |++|++++|...... .++++++ ....+++++.+|+++.
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~--g~~V~~~~r~~~~~~-~~~l~~~----------------~~~~~~~~~~~Dl~d~ 61 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEK--GYRVHGLVARRSSDT-RWRLREL----------------GIEGDIQYEDGDMADA 61 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCCSSCC-CHHHHHT----------------TCGGGEEEEECCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEECCCCccc-HHHHHHh----------------cccCCcEEEEccccCh
Confidence 68999999999999999999999 788999999765432 3455443 2236899999999986
Q ss_pred CCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccC--CCcc
Q psy7542 142 DLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHP--KEKV 214 (762)
Q Consensus 142 ~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~--~~~~ 214 (762)
. .+..... ..++|+|+|+..... .+...++..|+.||.+++++|++.+..++|++.||+.+++ ....
T Consensus 62 ~------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~ 135 (321)
T d1rpna_ 62 C------SVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAER 135 (321)
T ss_dssp H------HHHHHHHHHCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSS
T ss_pred H------HhhhhhccccccccccccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCC
Confidence 5 5655544 467899998876543 4456789999999999999999986667899999985443 3335
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPL 293 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~ 293 (762)
.+|+.+..|. +.|+.||.++|+++..++.. +++++++||+.|||+...+-
T Consensus 136 ~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~ 186 (321)
T d1rpna_ 136 QDENTPFYPR-----------------------------SPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIE 186 (321)
T ss_dssp BCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTT
T ss_pred CCCCCCcccc-----------------------------ChhHHHHHHHHHHHHHHHhhcCCcEEEEEEecccCCCcccc
Confidence 6676555444 78999999999999998876 99999999999999864310
Q ss_pred CCCCCCCC-CchHHHHHHhcCC-eEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHH
Q psy7542 294 PGWTDNIN-GPTGLLIGAGKGI-IRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDI 371 (762)
Q Consensus 294 pGWidn~~-gp~~li~~~~~G~-l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el 371 (762)
... ....++.....|. .....+++++.+||+||+|+|++++.++.+.. ...||++++ ++.++.++
T Consensus 187 -----~~~~~i~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~~~~~~~~~------~~~~ni~~~--~~~s~~~~ 253 (321)
T d1rpna_ 187 -----FVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDK------ADDYVVATG--VTTTVRDM 253 (321)
T ss_dssp -----SHHHHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSSS------CCCEEECCS--CEEEHHHH
T ss_pred -----ccHHHHHHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHHHHHHhcCC------cCCceeccc--ccceehhh
Confidence 000 1123344444443 45568899999999999999999999998764 367999998 89999999
Q ss_pred HHHHHHhhccCCCCc----cccccCC--------cc-ccc-cCCCchhhHHHHHHhhhhh
Q psy7542 372 IENGKDIARNKVPLN----NVLWYPG--------GA-MTN-RGYEPVLKRVHNRIKKGFD 417 (762)
Q Consensus 372 ~~~i~~~~G~~~P~~----~~~w~p~--------~~-~~~-lG~kP~l~~l~~ki~~~~~ 417 (762)
++.+.+..|...+.. .....|. .. +.. +||+|++ .+.+.+.+..+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~~k~~k~lG~~P~~-~l~e~i~~tv~ 312 (321)
T d1rpna_ 254 CQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRT-SLDELIRMMVE 312 (321)
T ss_dssp HHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCS-CHHHHHHHHHH
T ss_pred hHHHHHHhCCCccceeecCCCCCCCCccCCccCCHHHHHHHHCCCcCC-CHHHHHHHHHH
Confidence 999999886543211 1111111 10 111 7999976 67777776544
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=8.5e-30 Score=274.42 Aligned_cols=307 Identities=17% Similarity=0.169 Sum_probs=211.3
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchH-HHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSR-ERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~-eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
|.|||||||||||++|+++|++. +.+|++++|...+.... .+... ....+++++.+|+++
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~--g~~V~~~d~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~Dl~d 62 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIEN--GYDCVVADNLSNSTYDSVARLEV-----------------LTKHHIPFYEVDLCD 62 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCSSCCTHHHHHHHH-----------------HHTSCCCEEECCTTC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--cCeEEEEECCCCcchhHHHhHHh-----------------hcccCCeEEEeecCC
Confidence 67999999999999999999999 67888888765443211 11111 123678999999998
Q ss_pred CCCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc--
Q psy7542 141 PDLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK-- 213 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~-- 213 (762)
.+ +++.+.. ++|+|||+||..... +....+..+|+.||.+++++|++. ++++||++||..+++...
T Consensus 63 ~~------~l~~~~~~~~~d~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~-~i~~~i~~SS~~vyg~~~~~ 135 (347)
T d1z45a2 63 RK------GLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQY-NVSKFVFSSSATVYGDATRF 135 (347)
T ss_dssp HH------HHHHHHHHSCCCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEGGGGCCGGGS
T ss_pred HH------HHHHHHhccCCCEEEEccccccccccccCcccccccchhhhHHHHHHHHhc-ccceEEeecceeeecCcccC
Confidence 65 6777655 789999999987532 334568889999999999999997 899999999986665432
Q ss_pred ----ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---CCCEEEEeeeeec
Q psy7542 214 ----VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---GMPCMILRPSIII 286 (762)
Q Consensus 214 ----~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---glpv~IvRPs~V~ 286 (762)
+++|+....|. +.|+.||.++|+++..+.+. +++++++||+.||
T Consensus 136 ~~~~~~~e~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~ 186 (347)
T d1z45a2 136 PNMIPIPEECPLGPT-----------------------------NPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPI 186 (347)
T ss_dssp TTCCSBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEE
T ss_pred CCCCccccccCCCCC-----------------------------ChhHhHHHHHHHHHHHHHHhhccCCcEEEEeecceE
Confidence 34443333232 78999999999999988652 8999999999999
Q ss_pred cCCCCCCCCCCCCC--CCchHHHHHHhc--CCeEEEee------CCCcccccccHHHHHHHHHHHhhcccCC--CCCCce
Q psy7542 287 PIWKDPLPGWTDNI--NGPTGLLIGAGK--GIIRTMYC------DYSTCADFLPVDVLVNGVLLSTWNFLSN--PGNTMR 354 (762)
Q Consensus 287 G~~~eP~pGWidn~--~gp~~li~~~~~--G~l~~i~g------d~~~~~d~VpVDdvA~aii~a~~~~~~~--~~~~~~ 354 (762)
|+...+.-|..... .....++..... +....+.| ++....|++++.+++.+++.++...... .....+
T Consensus 187 g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (347)
T d1z45a2 187 GAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCR 266 (347)
T ss_dssp CCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEE
T ss_pred eecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCceeeeeeeeecccccccccccccccccccccccc
Confidence 98765443321111 111222223222 23223334 3456778999999999988887643221 112468
Q ss_pred EEEecCCCCCcccHHHHHHHHHHhhccCCCCccccccC--------Ccc-ccc-cCCCchhhHHHHHHhhhhhhhccccc
Q psy7542 355 VINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYP--------GGA-MTN-RGYEPVLKRVHNRIKKGFDIFEYYTK 424 (762)
Q Consensus 355 iyNi~s~~~~piT~~el~~~i~~~~G~~~P~~~~~w~p--------~~~-~~~-lG~kP~l~~l~~ki~~~~~~l~~f~~ 424 (762)
+||++++ +++|+.|+++.+.+..|.+.+.....-.+ +.. ... +||+|+. .+.+.+.+.+ +||..
T Consensus 267 ~~Ni~~~--~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~sk~~~~lGw~p~~-~lee~i~~ti---~w~~~ 340 (347)
T d1z45a2 267 EWNLGSG--KGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTEL-QVEDSCKDLW---KWTTE 340 (347)
T ss_dssp EEEESCS--CCEEHHHHHHHHHHHHTCCCCC---------CCCCCBCCHHHHHHTCCCCCC-CHHHHHHHHH---HHHHH
T ss_pred cceecCC--CcccHHHHHHHHHHHHCCCCceEeCCCCCCCCCEeeECHHHHHHHHCCCCCC-CHHHHHHHHH---HHHHh
Confidence 9999998 89999999999999998665543211111 111 111 8999987 7888887755 46655
Q ss_pred Cceee
Q psy7542 425 NSWSF 429 (762)
Q Consensus 425 ~~w~F 429 (762)
+.|.|
T Consensus 341 np~~~ 345 (347)
T d1z45a2 341 NPFGY 345 (347)
T ss_dssp CTTCS
T ss_pred ChhcC
Confidence 65544
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.2e-29 Score=268.42 Aligned_cols=303 Identities=16% Similarity=0.164 Sum_probs=207.7
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCc----chHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNK----NSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~----~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
|+|||||||||||++|+++|++. +.+|++++|..... ...++++.+. .....++.++.+|
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~--g~~V~~ld~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~D 66 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEA--GYLPVVIDNFHNAFRGGGSLPESLRRVQ--------------ELTGRSVEFEEMD 66 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHT--TCCEEEEECSSSSCBCSSSSBHHHHHHH--------------HHHTCCCEEEECC
T ss_pred CeEEEECCCcHHHHHHHHHHHHC--cCEEEEEECCCccccccccchHHHHHHH--------------HhcCCCcEEEEee
Confidence 68999999999999999999998 56778887532211 1112222110 1123689999999
Q ss_pred cCCCCCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC
Q psy7542 138 VAVPDLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE 212 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~ 212 (762)
+++.. .+..+.. .+++|+|+||..... ......+++|+.||.+++++|++. ++++|+|+||+.+++..
T Consensus 67 l~d~~------~l~~~~~~~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~-~v~~~i~~ss~~~~~~~ 139 (346)
T d1ek6a_ 67 ILDQG------ALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH-GVKNLVFSSSATVYGNP 139 (346)
T ss_dssp TTCHH------HHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGGGCSC
T ss_pred ccccc------cccccccccccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhc-Ccccccccccceeeecc
Confidence 99865 5666554 467899999986643 234567899999999999999997 89999999998554433
Q ss_pred cccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--CCCEEEEeeeeeccCCC
Q psy7542 213 KVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--GMPCMILRPSIIIPIWK 290 (762)
Q Consensus 213 ~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--glpv~IvRPs~V~G~~~ 290 (762)
........... ....++|+.+|..+|+.+.++++. +++.+++||+.+||+..
T Consensus 140 ~~~~~~~~~~~--------------------------~~~~~~Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~ 193 (346)
T d1ek6a_ 140 QYLPLDEAHPT--------------------------GGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHA 193 (346)
T ss_dssp SSSSBCTTSCC--------------------------CCCSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCT
T ss_pred ccccccccccc--------------------------cccCChHHHHHHHHHHHHHHHHHhccCCceEEEeecceeccCC
Confidence 21111100000 011278999999999999987664 99999999999999976
Q ss_pred CCCCCCCCCCCC--chHHHH--HHhcCCeEEEee------CCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 291 DPLPGWTDNING--PTGLLI--GAGKGIIRTMYC------DYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 291 eP~pGWidn~~g--p~~li~--~~~~G~l~~i~g------d~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
.+.-|+...... ....+. ....+....+.+ ++.+.+|++|++|+|+++..++...... ..+++||+++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~Rdfi~v~D~a~~~~~~~~~~~~~--~~~~i~Ni~~ 271 (346)
T d1ek6a_ 194 SGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQ--CGCRIYNLGT 271 (346)
T ss_dssp TSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTT--CCEEEEEECC
T ss_pred CCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCCeeEeEEEEEeccchhhhhccccccc--cCceEEEeCC
Confidence 543332211111 111222 233444444444 4667889999999999998887655432 2468999999
Q ss_pred CCCCcccHHHHHHHHHHhhccCCCCccccccC--------Ccccc-c-cCCCchhhHHHHHHhhhhhh
Q psy7542 361 NKDFQITWYDIIENGKDIARNKVPLNNVLWYP--------GGAMT-N-RGYEPVLKRVHNRIKKGFDI 418 (762)
Q Consensus 361 ~~~~piT~~el~~~i~~~~G~~~P~~~~~w~p--------~~~~~-~-lG~kP~l~~l~~ki~~~~~~ 418 (762)
+ +++++.|+++.+.+..|.+.|.......+ +.... . +||+|.+ .+.+.+.+..++
T Consensus 272 ~--~~~s~~dl~~~i~~~~~~~~~~~~~~~~~~e~~~~~~d~~k~~~~lgw~p~~-slee~I~~~i~w 336 (346)
T d1ek6a_ 272 G--TGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAAL-GLDRMCEDLWRW 336 (346)
T ss_dssp S--CCEEHHHHHHHHHHHHCSCCCEEEECCCTTCCSEECBCCHHHHHTTCCCCCC-CHHHHHHHHHHH
T ss_pred C--CcccHHHHHHHHHHHhCCCCCeEECCCCCCCCCEeeECHHHHHHHHCCCcCC-CHHHHHHHHHHH
Confidence 8 89999999999999998776654222211 11111 1 8999988 788888885544
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.8e-30 Score=274.49 Aligned_cols=262 Identities=16% Similarity=0.078 Sum_probs=192.2
Q ss_pred CEE-EEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 62 KNI-FITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 62 k~V-LVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
|+| ||||||||||++|+++|++. |++|++++|....... .+++.+.... . .....+++++.+|+++
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~--g~~V~~i~r~~~~~~~-~~~~~~~~~~--------~--~~~~~~~~~~~~Dl~d 67 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEK--GYEVHGIVRRSSSFNT-GRIEHLYKNP--------Q--AHIEGNMKLHYGDLTD 67 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCCSSCCC-TTTGGGC-------------------CEEEEECCTTC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHC--cCEEEEEECCCcccch-hhHHHHhhch--------h--hhccCCcEEEEeecCC
Confidence 567 99999999999999999998 7889999996542211 1222211110 0 2234689999999998
Q ss_pred CCCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcC--CccEEEEEeCCcccCC--
Q psy7542 141 PDLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMI--HLQLFVYVSTAYCHPK-- 211 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~--~lk~fV~vSSay~~~~-- 211 (762)
++ .+..++. ++++|+|+||..... .+....+++|+.||.+++++|++++ +.++|||+||+.+++.
T Consensus 68 ~~------~~~~~~~~~~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~ 141 (347)
T d1t2aa_ 68 ST------CLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQ 141 (347)
T ss_dssp HH------HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCS
T ss_pred ch------hhHHHHhhcccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCC
Confidence 76 6777665 467999999976643 3345678999999999999999873 3458999999865543
Q ss_pred CcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCC
Q psy7542 212 EKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWK 290 (762)
Q Consensus 212 ~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~ 290 (762)
..+++|+....|. +.|+.||.+||+++..+.+. +++++++||+.|||+..
T Consensus 142 ~~~~~E~~~~~P~-----------------------------~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~ 192 (347)
T d1t2aa_ 142 EIPQKETTPFYPR-----------------------------SPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRR 192 (347)
T ss_dssp SSSBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred CCCCCCCCCCCCC-----------------------------CHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCC
Confidence 4467887655554 68999999999999998776 99999999999999864
Q ss_pred CCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHH
Q psy7542 291 DPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYD 370 (762)
Q Consensus 291 eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~e 370 (762)
.+..+ .. .....++.....+....+.+++++.+++++|+|+|++++.++.+... ..|+++.. ...++.+
T Consensus 193 ~~~~~--~~-~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~~~a~~~~~~~~~~------~~~~~~~~--~~~~~~~ 261 (347)
T d1t2aa_ 193 GANFV--TR-KISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEP------EDFVIATG--EVHSVRE 261 (347)
T ss_dssp CTTSH--HH-HHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHHHHHHSSSC------CCEEECCS--CCEEHHH
T ss_pred CCCcc--cc-ccceeeehhhcCCcceeecCCCcceeeeeEecHHHHHHHHHhhcCCC------ccceeccc--cccccch
Confidence 32110 00 00112333333455567788999999999999999999999987643 56888887 7899999
Q ss_pred HHHHHHHhhccC
Q psy7542 371 IIENGKDIARNK 382 (762)
Q Consensus 371 l~~~i~~~~G~~ 382 (762)
..+......|..
T Consensus 262 ~~~~~~~~~~~~ 273 (347)
T d1t2aa_ 262 FVEKSFLHIGKT 273 (347)
T ss_dssp HHHHHHHHTTCC
T ss_pred hhhhhhhhhcce
Confidence 999988887643
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.97 E-value=1.5e-29 Score=276.85 Aligned_cols=308 Identities=15% Similarity=0.102 Sum_probs=203.7
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEe---CC-----------CCCcchHHHHHHHhcChhHHHHHhhhhccc
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILL---RP-----------KKNKNSRERLEEIFQSPLYEALKKEQSESA 126 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~Lv---R~-----------~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~ 126 (762)
||+|||||||||||++|+++|++. |++|++++ |. .......+++... . ..
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~--g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-----~~ 64 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKK--NYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW---------K-----AL 64 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHH---------H-----HH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--cCEEEEEecCCcccccccccccccccccchHHHHHHH---------H-----hh
Confidence 799999999999999999999999 56777774 11 1111122222211 0 11
Q ss_pred ccCCeEEEEeecCCCCCCCCHHHHHhhcCC--ccEEEEcccccCcc------ccHHHHHHHhHHHHHHHHHHHHHcCCcc
Q psy7542 127 IFEKVIPINGDVAVPDLGISAEDRQMLSET--IHIVYHIAATVRFD------DYMQTYVFLNTRGTRDMLNLSKQMIHLQ 198 (762)
Q Consensus 127 ~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~--vDiViH~AA~v~f~------~~l~~~~~~NV~GT~~LLelA~~~~~lk 198 (762)
...+++++.||++|.+ .+..++++ +|+|||+||..... ......+++|+.||.+++++|++.+..+
T Consensus 65 ~~~~i~~~~~Dl~d~~------~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~ 138 (393)
T d1i24a_ 65 TGKSIELYVGDICDFE------FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEEC 138 (393)
T ss_dssp HCCCCEEEESCTTSHH------HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cCCCcEEEEccCCCHH------HHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhcccc
Confidence 2468999999999876 67887764 59999999976532 2233578999999999999999985556
Q ss_pred EEEEEeCCcccCCCc-ccccccC-----------CCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHH
Q psy7542 199 LFVYVSTAYCHPKEK-VLEEKTY-----------PPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGV 266 (762)
Q Consensus 199 ~fV~vSSay~~~~~~-~i~E~~~-----------~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~l 266 (762)
.|++.||..+++... +..|... +.|..| .+.|+.||.++|.+
T Consensus 139 ~~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--------------------------~~~Y~~sK~~aE~~ 192 (393)
T d1i24a_ 139 HLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQA--------------------------SSFYHLSKVHDSHN 192 (393)
T ss_dssp EEEEECCGGGGCCCSSCBCSSEEEEEETTEEEEEECCCCC--------------------------CSHHHHHHHHHHHH
T ss_pred ceeecccccccccccccccccccccccccccccccccccc--------------------------ccHHHHHhhhhccc
Confidence 778888874443221 1222110 111111 26899999999999
Q ss_pred HHHHHHc-CCCEEEEeeeeeccCCCCCCC--CC----C--CCCCC--chHHHHHHhcCCeEEEeeCCCcccccccHHHHH
Q psy7542 267 VTEYMEA-GMPCMILRPSIIIPIWKDPLP--GW----T--DNING--PTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLV 335 (762)
Q Consensus 267 v~~~~~~-glpv~IvRPs~V~G~~~eP~p--GW----i--dn~~g--p~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA 335 (762)
+..+.+. +++++++||+.|||+...+.. ++ . +...+ ...++.....|....++|++.+.+||+||+|+|
T Consensus 193 ~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~ 272 (393)
T d1i24a_ 193 IAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTV 272 (393)
T ss_dssp HHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHH
T ss_pred ccccccccceeeeecccccccCCCccccccccccccccccccccccchhhhhHHhhcCCeeEEeeecccccccccccchH
Confidence 9998877 999999999999999765321 00 0 00111 123556677888888899999999999999999
Q ss_pred HHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHhhc---cCCCCcc---------ccc-cCCcc-ccccCC
Q psy7542 336 NGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIAR---NKVPLNN---------VLW-YPGGA-MTNRGY 401 (762)
Q Consensus 336 ~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~~G---~~~P~~~---------~~w-~p~~~-~~~lG~ 401 (762)
++++.++.+..... ...++|.+ + +.+|+.|+++.+.+..+ .+.+... ..+ ..+.. ...+||
T Consensus 273 ~a~~~~~~~~~~~g--~~~~~~~~-~--~~~si~el~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~LGw 347 (393)
T d1i24a_ 273 QCVEIAIANPAKAG--EFRVFNQF-T--EQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGL 347 (393)
T ss_dssp HHHHHHHHSCCCTT--CEEEEEEC-S--EEEEHHHHHHHHHHHHHTTTCCCCEEEECCSSCSCSSCCCCBCCCHHHHTTC
T ss_pred HHHHHHHHhhcccc--eeeeecCC-C--CeeEHHHHHHHHHHHHHhhCCCcceeeccCCCCCCCccEecCCHHHHHHcCC
Confidence 99999998766520 11223333 3 67999999999988762 2211110 001 11111 112899
Q ss_pred CchhhHHHHHHhhhhhhhccc
Q psy7542 402 EPVLKRVHNRIKKGFDIFEYY 422 (762)
Q Consensus 402 kP~l~~l~~ki~~~~~~l~~f 422 (762)
+|.. .+.+.+.+..++++.+
T Consensus 348 ~P~~-~~~~~i~~~~~~~~~~ 367 (393)
T d1i24a_ 348 EPHY-LSDSLLDSLLNFAVQF 367 (393)
T ss_dssp CCCC-CCHHHHHHHHHHHHHT
T ss_pred cccc-CHHHHHHHHHHHHHHH
Confidence 9987 6666666655544433
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.96 E-value=8.8e-29 Score=269.99 Aligned_cols=308 Identities=17% Similarity=0.174 Sum_probs=206.4
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCC---C---cchHHHHHHHhcChhHHHHHhhhhcccccCCeEEE
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKK---N---KNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPI 134 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~---~---~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V 134 (762)
+|+|||||||||||++|+++||+++ +.+|+++++-.. . ....+++...+. ...... ......++.++
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~-~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~ 74 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDT-NHSVVIVDSLVGTHGKSDHVETRENVARKLQ-----QSDGPK-PPWADRYAALE 74 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHC-CCEEEEEECCTTTTTCCTTSCCHHHHHHHHH-----HSCSSC-CTTTTCCCEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhC-CCEEEEEecCCcccccchhhhhhhhHHHHhh-----hhcccc-ccccccceEEE
Confidence 6899999999999999999999863 678899864211 1 111122211111 000000 01234678999
Q ss_pred EeecCCCCCCCCHHHHHhhc---CCccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcc
Q psy7542 135 NGDVAVPDLGISAEDRQMLS---ETIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYC 208 (762)
Q Consensus 135 ~GDl~~~~LGLs~~~l~~l~---~~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~ 208 (762)
.||++|++ .+.+++ ..+|+|||+||..... .......++|+.||.+++++|++. ++++++++||..+
T Consensus 75 ~~Di~d~~------~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~-~~~~~~~~~s~~~ 147 (383)
T d1gy8a_ 75 VGDVRNED------FLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLH-KCDKIIFSSSAAI 147 (383)
T ss_dssp ESCTTCHH------HHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEEEGGG
T ss_pred ECcccCHH------Hhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhcc-CCccccccccccc
Confidence 99999876 566554 4689999999987653 234467889999999999999997 7889999998855
Q ss_pred cCCCc---------ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEE
Q psy7542 209 HPKEK---------VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCM 278 (762)
Q Consensus 209 ~~~~~---------~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~ 278 (762)
..... ++.|+....|. +.|+.||..+|+++..+.+. |++++
T Consensus 148 ~~~~~~~~~~~~~~~~~e~~~~~p~-----------------------------~~Y~~sK~~~e~~~~~~~~~~gl~~~ 198 (383)
T d1gy8a_ 148 FGNPTMGSVSTNAEPIDINAKKSPE-----------------------------SPYGESKLIAERMIRDCAEAYGIKGI 198 (383)
T ss_dssp TBSCCC-----CCCCBCTTSCCBCS-----------------------------SHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred ccccccccccccccccccccCCCCC-----------------------------CHHHhhHhHHHHHHHHHHHHhCCCEE
Confidence 44332 12232222222 78999999999999999876 99999
Q ss_pred EEeeeeeccCCCCCC-CCCCCCCCCchH-HHHH----------------HhcCCeEEEee------CCCcccccccHHHH
Q psy7542 279 ILRPSIIIPIWKDPL-PGWTDNINGPTG-LLIG----------------AGKGIIRTMYC------DYSTCADFLPVDVL 334 (762)
Q Consensus 279 IvRPs~V~G~~~eP~-pGWidn~~gp~~-li~~----------------~~~G~l~~i~g------d~~~~~d~VpVDdv 334 (762)
++||+.|||+...+. +.+......... ++.. ...+....+.| ++.+.+||+||+|+
T Consensus 199 ~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~ 278 (383)
T d1gy8a_ 199 CLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDL 278 (383)
T ss_dssp EEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHH
T ss_pred EEecceeeccCccccccccccccchhHHHHHHHHHhhccccccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHH
Confidence 999999999987642 122222221111 1111 11223333443 46788999999999
Q ss_pred HHHHHHHhhcccCC----CCCCceEEEecCCCCCcccHHHHHHHHHHhhccCCCCccccccCC--------ccccc--cC
Q psy7542 335 VNGVLLSTWNFLSN----PGNTMRVINLTANKDFQITWYDIIENGKDIARNKVPLNNVLWYPG--------GAMTN--RG 400 (762)
Q Consensus 335 A~aii~a~~~~~~~----~~~~~~iyNi~s~~~~piT~~el~~~i~~~~G~~~P~~~~~w~p~--------~~~~~--lG 400 (762)
|++++.++...... .....++||++++ +++|+.|+++.+.+..|.+.+.......+. ..... +|
T Consensus 279 ~~a~~~~~~~~~~~~~~~~~~~~~i~Ni~s~--~~~s~~el~~~i~~~~~~~~~~~~~~~~~~d~~~~~~d~~k~~k~LG 356 (383)
T d1gy8a_ 279 ASAHILALDYVEKLGPNDKSKYFSVFNLGTS--RGYSVREVIEVARKTTGHPIPVRECGRREGDPAYLVAASDKAREVLG 356 (383)
T ss_dssp HHHHHHHHHHHHTCCTTTGGGSEEEEEESCS--CCEEHHHHHHHHHHHHCCCCCEEEECCCTTCCSEECBCCHHHHHHTC
T ss_pred HHHHHHHHhhhccccccccccCccEEEeCCC--CceeHHHHHHHHHHHhCCCCceEECCCCCCCcCEeeeCHHHHHHHHC
Confidence 99999988754321 1124689999999 899999999999999976665443222221 11111 89
Q ss_pred CCchhhHHHHHHhh
Q psy7542 401 YEPVLKRVHNRIKK 414 (762)
Q Consensus 401 ~kP~l~~l~~ki~~ 414 (762)
|+|++ .+.+.+.+
T Consensus 357 w~P~~-~l~e~i~~ 369 (383)
T d1gy8a_ 357 WKPKY-DTLEAIME 369 (383)
T ss_dssp CCCSC-CSHHHHHH
T ss_pred CccCC-CHHHHHHH
Confidence 99987 67777765
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.96 E-value=6e-29 Score=267.58 Aligned_cols=272 Identities=18% Similarity=0.144 Sum_probs=194.2
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
+||+|||||||||||++|+++|++. |++|++++|+... .+.+++... . .........+.+|+.
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~--G~~V~~~vR~~~~---~~~~~~~~~-----~-------~~~~~~~~~~~~Dl~ 72 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEH--GYKVRGTARSASK---LANLQKRWD-----A-------KYPGRFETAVVEDML 72 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHH---HHHHHHHHH-----H-------HSTTTEEEEECSCTT
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHC--cCEEEEEeCCchh---HHHHHHhhh-----c-------cccccccEEEecccc
Confidence 5999999999999999999999999 7888999996421 222222111 0 122234556889999
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCc------
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEK------ 213 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~------ 213 (762)
++. .+..++.++|+|+|+|+...+..+....+..|+.||.+++++|.+.+++++|||+||+.+.....
T Consensus 73 ~~~------~~~~~~~~~~~v~~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~ 146 (342)
T d1y1pa1 73 KQG------AYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGI 146 (342)
T ss_dssp STT------TTTTTTTTCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCC
T ss_pred chh------hhhhhcccchhhhhhcccccccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCc
Confidence 887 67888899999999999999888888899999999999999999987899999999975432211
Q ss_pred ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---CCCEEEEeeeeeccCCC
Q psy7542 214 VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---GMPCMILRPSIIIPIWK 290 (762)
Q Consensus 214 ~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---glpv~IvRPs~V~G~~~ 290 (762)
..+|+.. +...+.. ..... ........+.|+.||..+|+++..+.+. ++.++++||+.|+|+..
T Consensus 147 ~~~e~~~----~~~~~~~-~~~~~--------e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~ 213 (342)
T d1y1pa1 147 YLDEKSW----NLESIDK-AKTLP--------ESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIF 213 (342)
T ss_dssp EECTTCC----CHHHHHH-HHHSC--------TTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCS
T ss_pred ccccccc----ccccccc-ccccc--------ccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCC
Confidence 1222211 1111000 00000 0000111257999999999999888764 67889999999999865
Q ss_pred CCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHH
Q psy7542 291 DPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYD 370 (762)
Q Consensus 291 eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~e 370 (762)
.|.. .......++..+..|..... ..+....++++|+|+|.+++.++.+... ...||++++ +++||.|
T Consensus 214 ~~~~----~~~~~~~~~~~l~~g~~~~~-~~~~~~~~~v~v~Dva~~~i~~l~~~~~-----~g~~~~~~~--~~~t~~e 281 (342)
T d1y1pa1 214 DPET----QSGSTSGWMMSLFNGEVSPA-LALMPPQYYVSAVDIGLLHLGCLVLPQI-----ERRRVYGTA--GTFDWNT 281 (342)
T ss_dssp CTTT----CCCHHHHHHHHHHTTCCCHH-HHTCCSEEEEEHHHHHHHHHHHHHCTTC-----CSCEEEECC--EEECHHH
T ss_pred Cccc----cccchHHHHHHHHcCCcCcc-cCCccceeeeeHHHHHHHHHHhhcCccc-----cceEEEEcC--CceEHHH
Confidence 4422 11223456666666664432 2455668999999999999999987665 345667777 7899999
Q ss_pred HHHHHHHhh
Q psy7542 371 IIENGKDIA 379 (762)
Q Consensus 371 l~~~i~~~~ 379 (762)
+++.+.+.+
T Consensus 282 ia~~i~k~~ 290 (342)
T d1y1pa1 282 VLATFRKLY 290 (342)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHc
Confidence 999999887
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.96 E-value=4e-28 Score=258.96 Aligned_cols=293 Identities=15% Similarity=0.075 Sum_probs=205.6
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||+||++.|++. |++|++++|..+... .+++..+.... . ......+.++.+|+++.
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~--g~~V~~~~r~~~~~~-~~~~~~~~~~~-----~-----~~~~~~~~~~~~Di~~~ 68 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGK--GYEVHGLIRRSSNFN-TQRINHIYIDP-----H-----NVNKALMKLHYADLTDA 68 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCCSSCC-CTTTTTTC------------------CCEEEEECCTTCH
T ss_pred CEEEEeCCccHHHHHHHHHHHHC--cCEEEEEECCCcccc-hhhhhhhhhhh-----h-----hccccceEEEEccccCH
Confidence 78999999999999999999999 788999999654211 11221111100 0 11235688999999986
Q ss_pred CCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHc----CCccEEEEEeCCcccCCC
Q psy7542 142 DLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQM----IHLQLFVYVSTAYCHPKE 212 (762)
Q Consensus 142 ~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~----~~lk~fV~vSSay~~~~~ 212 (762)
. .+...++ ++|+|||+||..... +........|+.|+.+++++|+++ ....++++.||++.....
T Consensus 69 ~------~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~ 142 (339)
T d1n7ha_ 69 S------SLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGST 142 (339)
T ss_dssp H------HHHHHHHHHCCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTS
T ss_pred H------HHHHHHhhhccchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccC
Confidence 5 5666554 579999999987654 344578899999999999999764 134578888888765554
Q ss_pred c-ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCC
Q psy7542 213 K-VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWK 290 (762)
Q Consensus 213 ~-~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~ 290 (762)
. .++|+.+..|. +.|+.||..+|.++..+.+. +++++++||+.|||+..
T Consensus 143 ~~~~~E~~~~~p~-----------------------------~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~ 193 (339)
T d1n7ha_ 143 PPPQSETTPFHPR-----------------------------SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRR 193 (339)
T ss_dssp CSSBCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTS
T ss_pred CCCCCCCCCCCCc-----------------------------chhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCC
Confidence 3 56776554444 78999999999999999887 99999999999999864
Q ss_pred CCCCCCCCCCCCchHH---HHHHh-cCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcc
Q psy7542 291 DPLPGWTDNINGPTGL---LIGAG-KGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQI 366 (762)
Q Consensus 291 eP~pGWidn~~gp~~l---i~~~~-~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~pi 366 (762)
.+ + .....+ +.... .+....+.+++.+.+|+++|+|+|+++..++..... ..+++..+ .+.
T Consensus 194 ~~--~-----~~~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~v~D~a~~~~~~~~~~~~------~~~~~~~~--~~~ 258 (339)
T d1n7ha_ 194 GE--N-----FVTRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKP------DDYVVATE--EGH 258 (339)
T ss_dssp CT--T-----SHHHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHHHHHHHTSSSC------CEEEECCS--CEE
T ss_pred CC--C-----CCcchhhHHHHHHhcCCCCeEEeCCCCccccceeeehHHHHHHHHHhcCCC------Cccccccc--ccc
Confidence 32 1 111111 22222 334456678999999999999999999999987654 45666666 789
Q ss_pred cHHHHHHHHHHhhccCCCC----cccc--------ccCCccc-cc-cCCCchhhHHHHHHhhhhhh
Q psy7542 367 TWYDIIENGKDIARNKVPL----NNVL--------WYPGGAM-TN-RGYEPVLKRVHNRIKKGFDI 418 (762)
Q Consensus 367 T~~el~~~i~~~~G~~~P~----~~~~--------w~p~~~~-~~-lG~kP~l~~l~~ki~~~~~~ 418 (762)
++.++++.+.+..|...+. .... +..+... .. +||+|++ .+.+.+.+.+++
T Consensus 259 s~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~~Kak~~LGw~P~~-~le~gi~~ti~~ 323 (339)
T d1n7ha_ 259 TVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQV-GFEKLVKMMVDE 323 (339)
T ss_dssp EHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCS-CHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhcccCceeeeccCCCCCCCCCeeeECHHHHHHHHCCCcCC-CHHHHHHHHHHH
Confidence 9999999999998654221 1111 1111111 11 8999987 788888775443
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.95 E-value=3e-27 Score=250.74 Aligned_cols=304 Identities=15% Similarity=0.166 Sum_probs=206.9
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPD 142 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~ 142 (762)
+|||||||||||++|+++|+++ +++|++++|-.... ..+++..+. ...+++++.||+++.+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~--g~~V~~id~~~~~~-~~~~~~~~~----------------~~~~~~~i~~Di~~~~ 62 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQ--GIDLIVFDNLSRKG-ATDNLHWLS----------------SLGNFEFVHGDIRNKN 62 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCCSTT-HHHHHHHHH----------------TTCCCEEEECCTTCHH
T ss_pred EEEEECCCcHHHHHHHHHHHHC--cCEEEEEECCCccc-chhHHHHhh----------------ccCCcEEEEcccCCHH
Confidence 6999999999999999999999 67888887643322 223333321 2368999999999866
Q ss_pred CCCCHHHHHhhcCC--ccEEEEcccccCccc---cHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCC-cccCCCc--c
Q psy7542 143 LGISAEDRQMLSET--IHIVYHIAATVRFDD---YMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTA-YCHPKEK--V 214 (762)
Q Consensus 143 LGLs~~~l~~l~~~--vDiViH~AA~v~f~~---~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSa-y~~~~~~--~ 214 (762)
++.+++++ +|+|||+||.+.... +....+++|+.||.+|+++|.+. ++++++++||. ....... +
T Consensus 63 ------~l~~~~~~~~~d~Vih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~-~~~~~i~~sS~~~~~~~~~~~~ 135 (338)
T d1orra_ 63 ------DVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQY-NSNCNIIYSSTNKVYGDLEQYK 135 (338)
T ss_dssp ------HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEEGGGGTTCTTSC
T ss_pred ------HHHHHHHhcCCceEEeecccccccccccChHHHHHHHHHHHHHHHHhhhcc-cccccccccccccccccccccc
Confidence 67777765 599999999886543 34578899999999999999998 55555555554 2222211 1
Q ss_pred cccccC-----CCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccC
Q psy7542 215 LEEKTY-----PPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPI 288 (762)
Q Consensus 215 i~E~~~-----~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~ 288 (762)
..+... ..|.... .......-+.|+.+|..+|.++...... ++...++|++.++++
T Consensus 136 ~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (338)
T d1orra_ 136 YNETETRYTCVDKPNGYD------------------ESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGG 197 (338)
T ss_dssp EEECSSCEEETTCTTCBC------------------TTSCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECT
T ss_pred cccccccccccccccCcc------------------cCCccccccccccccchhhhhhhhhhhccCcccccccccceeec
Confidence 111100 0010000 0000011268999999999999988876 999999999999987
Q ss_pred CCCCCCCCCCCCCCc-hHHHHHH-----hcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCC
Q psy7542 289 WKDPLPGWTDNINGP-TGLLIGA-----GKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANK 362 (762)
Q Consensus 289 ~~eP~pGWidn~~gp-~~li~~~-----~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~ 362 (762)
...+.. ..+. ..++..+ ..+....+.+++...+|+++|+|+|++++.++.+.... .+++||+..+.
T Consensus 198 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~r~~~~v~D~~~~~~~~l~~~~~~---~~~~~~i~~~~ 269 (338)
T d1orra_ 198 RQFATY-----DQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKI---RGNAFNIGGTI 269 (338)
T ss_dssp TCCCBT-----TBCHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECEEHHHHHHHHHHHHHTHHHH---TTCEEEESSCG
T ss_pred cccccc-----cccccchhhHHHHHHHhccCCceEEeCCCceeEeeecccchhhHHHHHHhccccc---cCccccccccc
Confidence 653221 1111 2233222 23566778899999999999999999999998764321 36899997665
Q ss_pred CCcccHHHHHHHHHHhhccCCCCccccc--------cCCccc-cc-cCCCchhhHHHHHHhhhhhhh
Q psy7542 363 DFQITWYDIIENGKDIARNKVPLNNVLW--------YPGGAM-TN-RGYEPVLKRVHNRIKKGFDIF 419 (762)
Q Consensus 363 ~~piT~~el~~~i~~~~G~~~P~~~~~w--------~p~~~~-~~-lG~kP~l~~l~~ki~~~~~~l 419 (762)
.+++++.|+++.+.+..|.+.++..... ..+... .. +||+|++ .+.+.+.+.++++
T Consensus 270 ~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~Lg~~p~~-sl~e~i~~ti~W~ 335 (338)
T d1orra_ 270 VNSLSLLELFKLLEDYCNIDMRFTNLPVRESDQRVFVADIKKITNAIDWSPKV-SAKDGVQKMYDWT 335 (338)
T ss_dssp GGEEEHHHHHHHHHHHHTCCCCEEEECCCSSCCSEECBCCHHHHHHHCCCCCS-CHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHCCCceeEeCCCCCCCcCeeeECHHHHHHHHCCCcCC-CHHHHHHHHHHHH
Confidence 5889999999999999876554332211 111111 11 8999987 8888888865543
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=1.3e-27 Score=252.77 Aligned_cols=281 Identities=14% Similarity=0.137 Sum_probs=196.6
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
.|+|||||||||||++|+++|++. +..++++.+.. ..|+.+
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~--g~~vi~~~~~~-------------------------------------~~~~~~ 42 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQR--GDVELVLRTRD-------------------------------------ELNLLD 42 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTC--TTEEEECCCTT-------------------------------------TCCTTC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC--cCEEEEecCch-------------------------------------hccccC
Confidence 478999999999999999999998 55444443321 124444
Q ss_pred CCCCCCHHHHHhhcC--CccEEEEcccccCcc----ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCC--
Q psy7542 141 PDLGISAEDRQMLSE--TIHIVYHIAATVRFD----DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKE-- 212 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~--~vDiViH~AA~v~f~----~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~-- 212 (762)
.. .+..+++ .+|.|+|+|+.+... .+..+.+++|+.||.+++++|++. ++++|||+||..+++..
T Consensus 43 ~~------~~~~~~~~~~~d~v~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~v~~~i~~SS~~vyg~~~~ 115 (315)
T d1e6ua_ 43 SR------AVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQN-DVNKLLFLGSSCIYPKLAK 115 (315)
T ss_dssp HH------HHHHHHHHHCCSEEEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEECCGGGSCTTCC
T ss_pred HH------HHHHHHhhcCCCEEEEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEECCceEcCCCCC
Confidence 32 4544443 479999999877542 344567889999999999999998 89999999998766543
Q ss_pred cccccccCCC-CCChhhHHHHHHhhhHHHHHHHHHhhhcCCC-chhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCC
Q psy7542 213 KVLEEKTYPP-PVSPHNVIEKAELLSKNELELLKQELLQDFP-NGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIW 289 (762)
Q Consensus 213 ~~i~E~~~~~-p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~p-n~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~ 289 (762)
.+++|+.... +.. +| +.|+.||.++|+++..+.+. |++++|+||+.|||+.
T Consensus 116 ~~~~E~~~~~~~~~--------------------------~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~ 169 (315)
T d1e6ua_ 116 QPMAESELLQGTLE--------------------------PTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPH 169 (315)
T ss_dssp SSBCGGGTTSSCCC--------------------------GGGHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTT
T ss_pred CCccCCccccCCCC--------------------------CCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCC
Confidence 3556653221 111 11 36999999999999998877 9999999999999987
Q ss_pred CCCCCCCCC--CCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCC----CCCCceEEEecCCCC
Q psy7542 290 KDPLPGWTD--NINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSN----PGNTMRVINLTANKD 363 (762)
Q Consensus 290 ~eP~pGWid--n~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~----~~~~~~iyNi~s~~~ 363 (762)
......... ..............+....+.+++...+++++++|++.++..++...... .......+|++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 247 (315)
T d1e6ua_ 170 DNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTG-- 247 (315)
T ss_dssp CCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCS--
T ss_pred CCCCccccccceeeeccchhhhhccCCceEEcCCCceEEEEEEeehhHHHHHHhhhhccccccccccccccccccCCC--
Confidence 543211000 00011123344556777788889999999999999999999988654321 0113578999998
Q ss_pred CcccHHHHHHHHHHhhccCCCCccccccCCcc---------ccccCCCchhhHHHHHHhhhh
Q psy7542 364 FQITWYDIIENGKDIARNKVPLNNVLWYPGGA---------MTNRGYEPVLKRVHNRIKKGF 416 (762)
Q Consensus 364 ~piT~~el~~~i~~~~G~~~P~~~~~w~p~~~---------~~~lG~kP~l~~l~~ki~~~~ 416 (762)
.+.+..++++.+.+..|.+..+......|... +..+||+|+. .+.+.+.+..
T Consensus 248 ~~~~i~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~d~sk~k~Lg~~p~~-~l~e~i~~ti 308 (315)
T d1e6ua_ 248 VDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEI-SLEAGLASTY 308 (315)
T ss_dssp CCEEHHHHHHHHHHHHTCCSEEEEETTSCCCCSBCCBCCHHHHHTTCCCCC-CHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhCCCcceEECCCCCCCCceeccCHHHHHHcCCCCCC-CHHHHHHHHH
Confidence 88999999999999987654332222222111 1128999987 7777777743
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.95 E-value=4.6e-27 Score=252.35 Aligned_cols=302 Identities=15% Similarity=0.095 Sum_probs=211.0
Q ss_pred hhccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 56 SATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 56 ~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
.+||+||+|||||||||||++|+++|++. +.+|++++|........ ++. ....++++++.
T Consensus 3 ~~~~~~KkILVTG~tGfIGs~lv~~Ll~~--g~~V~~~~r~~~~~~~~-----------~~~-------~~~~~~i~~~~ 62 (356)
T d1rkxa_ 3 NSFWQGKRVFVTGHTGFKGGWLSLWLQTM--GATVKGYSLTAPTVPSL-----------FET-------ARVADGMQSEI 62 (356)
T ss_dssp HHHHTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCSSSSCH-----------HHH-------TTTTTTSEEEE
T ss_pred hhhhCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCCCccHHH-----------Hhh-------hhcccCCeEEE
Confidence 36899999999999999999999999999 67889999976543221 111 12235799999
Q ss_pred eecCCCCCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccC
Q psy7542 136 GDVAVPDLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHP 210 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~ 210 (762)
||+++++ .+.++.+ .+|+|+|+||..... ........+|+.||.+++++|++.+..+.+++.||.++..
T Consensus 63 ~Dl~d~~------~l~~~~~~~~~~~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~ 136 (356)
T d1rkxa_ 63 GDIRDQN------KLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYD 136 (356)
T ss_dssp CCTTCHH------HHHHHHHHHCCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBC
T ss_pred eeccChH------hhhhhhhhchhhhhhhhhccccccccccCCccccccccccchhhhhhhhcccccccccccccccccc
Confidence 9999865 5666655 469999999986532 3445788999999999999999986677777777775544
Q ss_pred CCc---ccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH---------c-CCCE
Q psy7542 211 KEK---VLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME---------A-GMPC 277 (762)
Q Consensus 211 ~~~---~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~---------~-glpv 277 (762)
... +.+|+....|. +.|+.+|..+|..+..++. . ++.+
T Consensus 137 ~~~~~~~~~~~~~~~p~-----------------------------~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~ 187 (356)
T d1rkxa_ 137 NKEWIWGYRENEAMGGY-----------------------------DPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAV 187 (356)
T ss_dssp CCCSSSCBCTTSCBCCS-----------------------------SHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEE
T ss_pred ccccccccccccccCCC-----------------------------CccccccccchhhhhHHhhhcccchhccccCceE
Confidence 332 33443322232 6799999999999887654 2 7889
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
+++||+.|||+.+.+. . ..+..++.. ..+....+.+++.+.+++++|+|+|.|++.++..........+...+
T Consensus 188 ~~~r~~~vyGp~~~~~-----~-~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~v~D~~~a~~~~~~~~~~~~~~~~~~~~ 260 (356)
T d1rkxa_ 188 ATVRAGNVIGGGDWAL-----D-RIVPDILRA-FEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWN 260 (356)
T ss_dssp EEEECCCEECTTCCCS-----S-CHHHHHHHH-HHTTCCEECSCTTCEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEE
T ss_pred EeccCCCeeCCCcchh-----h-HHHHHHHHH-HhCCCceEEeeccccccccccccccchhhhhhhhhcccccccccccc
Confidence 9999999999864321 1 112233333 44555567889999999999999999999988865432111223444
Q ss_pred ecCCCCCcccHHHHHHHHHHhhccCCCCccccc---------cCCcc-ccc-cCCCchhhHHHHHHhhhhhhhc
Q psy7542 358 LTANKDFQITWYDIIENGKDIARNKVPLNNVLW---------YPGGA-MTN-RGYEPVLKRVHNRIKKGFDIFE 420 (762)
Q Consensus 358 i~s~~~~piT~~el~~~i~~~~G~~~P~~~~~w---------~p~~~-~~~-lG~kP~l~~l~~ki~~~~~~l~ 420 (762)
...+....+++.++++.+.+..|...+...... ..+.. ... +||+|++ .+.+.+.+.+++++
T Consensus 261 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~skak~~LGw~P~~-~l~egi~~ti~wyk 333 (356)
T d1rkxa_ 261 FGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPRW-NLNTTLEYIVGWHK 333 (356)
T ss_dssp CCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHHHHCCCCCC-CHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhhhHHHhCCCccEEEcCCCCCCCcCeeeEcHHHHHHHHCCCcCC-CHHHHHHHHHHHHH
Confidence 444333789999999999999975543321110 11111 111 8999987 78888888665543
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.2e-24 Score=221.56 Aligned_cols=210 Identities=20% Similarity=0.174 Sum_probs=160.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|+|||||||||+|++|+++|++++.-.+|++++|.+.... .....++....+|+
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~-----------------------~~~~~~i~~~~~D~ 68 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFD-----------------------EEAYKNVNQEVVDF 68 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCC-----------------------SGGGGGCEEEECCG
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhc-----------------------ccccceeeeeeecc
Confidence 4778999999999999999999999952239999999764321 12346788888999
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEK 218 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~ 218 (762)
.+.+ ++...++++|+|||||+......+.....++|+.++.+++++|++. ++++|||+||..+....
T Consensus 69 ~~~~------~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~v~~fi~~Ss~~~~~~~------ 135 (232)
T d2bkaa1 69 EKLD------DYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAG-GCKHFNLLSSKGADKSS------ 135 (232)
T ss_dssp GGGG------GGGGGGSSCSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCTTCCTTC------
T ss_pred cccc------cccccccccccccccccccccccchhhhhhhcccccceeeeccccc-CccccccCCccccccCc------
Confidence 8765 7888889999999999987666667788999999999999999997 79999999998764321
Q ss_pred cCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCC-EEEEeeeeeccCCCCCCCCCC
Q psy7542 219 TYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMP-CMILRPSIIIPIWKDPLPGWT 297 (762)
Q Consensus 219 ~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glp-v~IvRPs~V~G~~~eP~pGWi 297 (762)
++.|+.+|+.+|+.+.+. +++ ++|+|||.|+|+..+.
T Consensus 136 ----------------------------------~~~Y~~~K~~~E~~l~~~---~~~~~~IlRP~~i~G~~~~~----- 173 (232)
T d2bkaa1 136 ----------------------------------NFLYLQVKGEVEAKVEEL---KFDRYSVFRPGVLLCDRQES----- 173 (232)
T ss_dssp ----------------------------------SSHHHHHHHHHHHHHHTT---CCSEEEEEECCEEECTTGGG-----
T ss_pred ----------------------------------cchhHHHHHHhhhccccc---cccceEEecCceeecCCCcC-----
Confidence 268999999999998775 665 8999999999985431
Q ss_pred CCCCCchH-HHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 298 DNINGPTG-LLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 298 dn~~gp~~-li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
.+.. ++...... ..........||++|+|++++.++..+.. .+++.+.+
T Consensus 174 ----~~~~~~~~~~~~~-----~~~~~~~~~~I~~~dvA~a~i~~~~~~~~-----~~~~i~~~ 223 (232)
T d2bkaa1 174 ----RPGEWLVRKFFGS-----LPDSWASGHSVPVVTVVRAMLNNVVRPRD-----KQMELLEN 223 (232)
T ss_dssp ----SHHHHHHHHHHCS-----CCTTGGGGTEEEHHHHHHHHHHHHTSCCC-----SSEEEEEH
T ss_pred ----cHHHHHHHHHhhc-----cCCcccCCCeEEHHHHHHHHHHHHhcCcc-----CCeEEEcH
Confidence 1111 22222221 11333445679999999999999877765 45666654
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.91 E-value=1.8e-23 Score=216.17 Aligned_cols=223 Identities=17% Similarity=0.102 Sum_probs=173.3
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|+++|... +++|+++.|.+ +|+.+.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~--g~~Vi~~~r~~--------------------------------------~D~~d~ 41 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGK--NVEVIPTDVQD--------------------------------------LDITNV 41 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTS--SEEEEEECTTT--------------------------------------CCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCEEEEeechh--------------------------------------ccCCCH
Confidence 68999999999999999999987 78889988742 355554
Q ss_pred CCCCCHHHHHhhcC--CccEEEEcccccCcc---ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC--Ccc
Q psy7542 142 DLGISAEDRQMLSE--TIHIVYHIAATVRFD---DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK--EKV 214 (762)
Q Consensus 142 ~LGLs~~~l~~l~~--~vDiViH~AA~v~f~---~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~--~~~ 214 (762)
+ +++++++ +.|+|||+|+....+ .........|+.++..+++.++.. ...++++||..+... ..+
T Consensus 42 ~------~~~~~l~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~--~~~~~~~ss~~v~~~~~~~~ 113 (281)
T d1vl0a_ 42 L------AVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSV--GAEIVQISTDYVFDGEAKEP 113 (281)
T ss_dssp H------HHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHH--TCEEEEEEEGGGSCSCCSSC
T ss_pred H------HHHHHHHHcCCCEEEeeccccccccccccchhhcccccccccccccccccc--cccccccccceeeecccccc
Confidence 3 5666655 569999999987643 344567889999999999999875 256777777644433 335
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLP 294 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~p 294 (762)
..|...+.|. +.|+.+|..+|.++.+. +.+.+|+||+.|||+...
T Consensus 114 ~~e~~~~~~~-----------------------------~~~~~~k~~~e~~~~~~---~~~~~i~R~~~vyG~~~~--- 158 (281)
T d1vl0a_ 114 ITEFDEVNPQ-----------------------------SAYGKTKLEGENFVKAL---NPKYYIVRTAWLYGDGNN--- 158 (281)
T ss_dssp BCTTSCCCCC-----------------------------SHHHHHHHHHHHHHHHH---CSSEEEEEECSEESSSSC---
T ss_pred ccccccccch-----------------------------hhhhhhhhHHHHHHHHh---CCCccccceeEEeCCCcc---
Confidence 5665554443 67999999999999876 789999999999998532
Q ss_pred CCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHH
Q psy7542 295 GWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIEN 374 (762)
Q Consensus 295 GWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~ 374 (762)
....++..+..+....+.+ +..+++++++|+|+++..++..... ++||++++ +++|+.|+++.
T Consensus 159 -------~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~~~~~~~~~~~~~~------g~~~~~~~--~~~s~~e~~~~ 221 (281)
T d1vl0a_ 159 -------FVKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDEKNY------GTFHCTCK--GICSWYDFAVE 221 (281)
T ss_dssp -------HHHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHHTCC------EEEECCCB--SCEEHHHHHHH
T ss_pred -------cccchhhhhccCCceeecC--Cceeccchhhhhhhhhhhhhhhccc------CceeEeCC--CccchHHHHHH
Confidence 2334556666666655554 5789999999999999999987643 69999998 89999999999
Q ss_pred HHHhhccCCC
Q psy7542 375 GKDIARNKVP 384 (762)
Q Consensus 375 i~~~~G~~~P 384 (762)
+.+.+|.+.+
T Consensus 222 i~~~~g~~~~ 231 (281)
T d1vl0a_ 222 IFRLTGIDVK 231 (281)
T ss_dssp HHHHHCCCCE
T ss_pred HHHHhCCCce
Confidence 9999976654
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=6.2e-24 Score=221.26 Aligned_cols=284 Identities=14% Similarity=0.148 Sum_probs=172.1
Q ss_pred EEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEE-EeecCCC
Q psy7542 64 IFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPI-NGDVAVP 141 (762)
Q Consensus 64 VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V-~GDl~~~ 141 (762)
|||||||||||++|+++|+++ +. +|+++.+-..+... .++.+ ....... ..|+.+.
T Consensus 2 ILITGgsGfIGs~lv~~L~~~--g~~~V~~~d~~~~~~~~-~~~~~-------------------~~~~~~~~~~~~~~~ 59 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDK--GITDILVVDNLKDGTKF-VNLVD-------------------LNIADYMDKEDFLIQ 59 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTT--TCCCEEEEECCSSGGGG-HHHHT-------------------SCCSEEEEHHHHHHH
T ss_pred EEEecCccHHHHHHHHHHHhC--CCCeEEEEECCCCcchh-hcccc-------------------cchhhhccchHHHHH
Confidence 899999999999999999999 54 67887654433211 11100 0011111 1111110
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCcc-ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCC-Cc-ccccc
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRFD-DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPK-EK-VLEEK 218 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f~-~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~-~~-~i~E~ 218 (762)
.........+++|+|+||..... .+.......|+.++.+++++++.. +++ +++.||..+... .. ..+|+
T Consensus 60 ------~~~~~~~~~~~~i~~~aa~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~i~-~v~~ss~~~~~~~~~~~~~~~ 131 (307)
T d1eq2a_ 60 ------IMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLER-EIP-FLYASSAATYGGRTSDFIESR 131 (307)
T ss_dssp ------HHTTCCCSSCCEEEECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHH-TCC-EEEEEEGGGGTTCCSCBCSSG
T ss_pred ------Hhhhhcccchhhhhhhcccccccccccccccccccccccccccccccc-ccc-ccccccccccccccccccccc
Confidence 01112234689999999976543 455567888999999999999987 665 566666544332 22 23333
Q ss_pred cCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc-CCCEEEEeeeeeccCCCCCCCCCC
Q psy7542 219 TYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-GMPCMILRPSIIIPIWKDPLPGWT 297 (762)
Q Consensus 219 ~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-glpv~IvRPs~V~G~~~eP~pGWi 297 (762)
....| .+.|+.+|..+|.++..+.+. +++++++||+.|||+...+..
T Consensus 132 ~~~~~-----------------------------~~~Y~~~K~~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~--- 179 (307)
T d1eq2a_ 132 EYEKP-----------------------------LNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKG--- 179 (307)
T ss_dssp GGCCC-----------------------------SSHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGG---
T ss_pred ccccc-----------------------------ccccccccchhhhhccccccccccccccccceeEeeccccccc---
Confidence 22222 278999999999999999887 999999999999998653211
Q ss_pred CCCCC-chHHHHHHhcCCeE-EEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHH
Q psy7542 298 DNING-PTGLLIGAGKGIIR-TMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENG 375 (762)
Q Consensus 298 dn~~g-p~~li~~~~~G~l~-~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i 375 (762)
.... ...++..+..|... ...+++...+++++++|++.++..+..+.. ..+||++++ ++.|+.|+++.+
T Consensus 180 -~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~~~~~~~------~~~~~~~~~--~~~si~~i~~~i 250 (307)
T d1eq2a_ 180 -SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV------SGIFNLGTG--RAESFQAVADAT 250 (307)
T ss_dssp -GGSCHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHCC------CEEEEESCS--CCBCHHHHHHHC
T ss_pred -cccccccccccccccccceeeecCccceeeeeeecccHHHHHHHHhhhcc------ccccccccc--cchhHHHHHHHH
Confidence 1111 12344455555443 345788889999999999999999888654 479999999 899999999999
Q ss_pred HHhhccC----CCCcccc-------ccCCcc-ccc-cCCCchhhHHHHHHhhhhhhh
Q psy7542 376 KDIARNK----VPLNNVL-------WYPGGA-MTN-RGYEPVLKRVHNRIKKGFDIF 419 (762)
Q Consensus 376 ~~~~G~~----~P~~~~~-------w~p~~~-~~~-lG~kP~l~~l~~ki~~~~~~l 419 (762)
.+..+.. .|..... ..++.. ... +||+|++ .+.+.+.+.++++
T Consensus 251 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~~k~~~~~~~~p~~-sl~egi~~~i~w~ 306 (307)
T d1eq2a_ 251 LAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFK-TVAEGVTEYMAWL 306 (307)
T ss_dssp ---------------------CCCSCCBCCHHHHHTTCCCCCC-CHHHHHHHHHHHT
T ss_pred HHhcCCCCeeEeeCCccCCCCCceeeecCHHHHHHHHCCCCCC-CHHHHHHHHHHhC
Confidence 8877421 1221110 011111 111 7899987 7888888766543
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.87 E-value=3e-22 Score=208.81 Aligned_cols=243 Identities=10% Similarity=0.052 Sum_probs=173.1
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
.++|||||||||+|++|+++|+++ |++|++++|+....... +.+.+. .....+++++.+|+.+
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~--G~~V~~~~R~~~~~~~~-~~~~~~--------------~~~~~~v~~v~~d~~d 65 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISL--GHPTYVLFRPEVVSNID-KVQMLL--------------YFKQLGAKLIEASLDD 65 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCSCCSSCHH-HHHHHH--------------HHHTTTCEEECCCSSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCCcccchh-HHHHHh--------------hhccCCcEEEEeeccc
Confidence 467999999999999999999998 67789999987654432 111110 1123679999999998
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccC
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTY 220 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~ 220 (762)
.+ .+..++.++++++|+++.... ..|..++.+++++|++. +..++++.||..+.....
T Consensus 66 ~~------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~a~~~-~~~~~v~~Ss~g~~~~~~------- 123 (312)
T d1qyda_ 66 HQ------RLVDALKQVDVVISALAGGVL--------SHHILEQLKLVEAIKEA-GNIKRFLPSEFGMDPDIM------- 123 (312)
T ss_dssp HH------HHHHHHTTCSEEEECCCCSSS--------STTTTTHHHHHHHHHHS-CCCSEEECSCCSSCTTSC-------
T ss_pred ch------hhhhhccCcchhhhhhhhccc--------ccchhhhhHHHHHHHHh-cCCcEEEEeeccccCCCc-------
Confidence 65 788899999999999986432 34677888999999987 445667777765443221
Q ss_pred CCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCC
Q psy7542 221 PPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNI 300 (762)
Q Consensus 221 ~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~ 300 (762)
..+.. ....|..+|..+++...+. +++++++||+.++|....+...+....
T Consensus 124 ~~~~~--------------------------~~~~~~~~~~~~~~~~~~~---~~~~~i~r~~~~~g~~~~~~~~~~~~~ 174 (312)
T d1qyda_ 124 EHALQ--------------------------PGSITFIDKRKVRRAIEAA---SIPYTYVSSNMFAGYFAGSLAQLDGHM 174 (312)
T ss_dssp CCCCS--------------------------STTHHHHHHHHHHHHHHHT---TCCBCEEECCEEHHHHTTTSSCTTCCS
T ss_pred ccccc--------------------------hhhhhhHHHHHHHHhhccc---ccceEEeccceeecCCccchhhHHHHh
Confidence 11111 1146666777766655433 899999999999997654433221111
Q ss_pred CCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHhhc
Q psy7542 301 NGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIAR 380 (762)
Q Consensus 301 ~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~~G 380 (762)
...+....++++++..+++|+++|+|++++.++.++... ...+|+++++ +.+|++|+++.+.+..|
T Consensus 175 ---------~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~---~~~~~~~~~~--~~~s~~e~~~~~~~~~g 240 (312)
T d1qyda_ 175 ---------MPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTL---NKTMYIRPPM--NILSQKEVIQIWERLSE 240 (312)
T ss_dssp ---------SCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGGS---SSEEECCCGG--GEEEHHHHHHHHHHHHT
T ss_pred ---------hhcccccccccccccccceeeHHHHHHHHHHHhcCcccc---CceEEEeCCC--cCCCHHHHHHHHHHHHC
Confidence 123344556788999999999999999999999876552 2345677766 78999999999999997
Q ss_pred cCCCC
Q psy7542 381 NKVPL 385 (762)
Q Consensus 381 ~~~P~ 385 (762)
.+.+.
T Consensus 241 ~~~~~ 245 (312)
T d1qyda_ 241 QNLDK 245 (312)
T ss_dssp CCCEE
T ss_pred CCCeE
Confidence 66443
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.8e-21 Score=193.93 Aligned_cols=202 Identities=16% Similarity=0.070 Sum_probs=153.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
|..|+|+||||||++|++++++|+++ +++|.+++|...... .....+++++.||+
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~--g~~V~~~~R~~~~~~-----------------------~~~~~~~~~~~gD~ 55 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQA--GYEVTVLVRDSSRLP-----------------------SEGPRPAHVVVGDV 55 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCGGGSC-----------------------SSSCCCSEEEESCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--cCEEEEEEcChhhcc-----------------------cccccccccccccc
Confidence 35789999999999999999999999 778999999753211 12236789999999
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEK 218 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~ 218 (762)
++++ ++.++++++|+|||+++......+ ..++..++++++++|++. ++++||++||+.+..+......
T Consensus 56 ~d~~------~l~~al~~~d~vi~~~g~~~~~~~----~~~~~~~~~~l~~aa~~~-~v~r~i~~ss~~~~~~~~~~~~- 123 (205)
T d1hdoa_ 56 LQAA------DVDKTVAGQDAVIVLLGTRNDLSP----TTVMSEGARNIVAAMKAH-GVDKVVACTSAFLLWDPTKVPP- 123 (205)
T ss_dssp TSHH------HHHHHHTTCSEEEECCCCTTCCSC----CCHHHHHHHHHHHHHHHH-TCCEEEEECCGGGTSCTTCSCG-
T ss_pred cchh------hHHHHhcCCCEEEEEeccCCchhh----hhhhHHHHHHHHHHHHhc-CCCeEEEEeeeeccCCCccccc-
Confidence 9865 899999999999999987543333 246778999999999997 8999999999866543221100
Q ss_pred cCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCC
Q psy7542 219 TYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTD 298 (762)
Q Consensus 219 ~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWid 298 (762)
. -..|...|..+|+++++. +++++|+||+.+++....
T Consensus 124 --------~-------------------------~~~~~~~~~~~e~~l~~~---~~~~tiirp~~~~~~~~~------- 160 (205)
T d1hdoa_ 124 --------R-------------------------LQAVTDDHIRMHKVLRES---GLKYVAVMPPHIGDQPLT------- 160 (205)
T ss_dssp --------G-------------------------GHHHHHHHHHHHHHHHHT---CSEEEEECCSEEECCCCC-------
T ss_pred --------c-------------------------ccccchHHHHHHHHHHhc---CCceEEEecceecCCCCc-------
Confidence 0 036888999999988754 999999999998764211
Q ss_pred CCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 299 NINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 299 n~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
|. ..+..++.....+|+++|+|++++.++.++.. .++.+.++
T Consensus 161 --------------~~-~~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~~----~g~~~~~s 202 (205)
T d1hdoa_ 161 --------------GA-YTVTLDGRGPSRVISKHDLGHFMLRCLTTDEY----DGHSTYPS 202 (205)
T ss_dssp --------------SC-CEEESSSCSSCSEEEHHHHHHHHHHTTSCSTT----TTCEEEEE
T ss_pred --------------cc-EEEeeCCCCCCCcCCHHHHHHHHHHHhCCCCC----CCEEEecC
Confidence 11 12344667778899999999999999987664 35555554
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.87 E-value=3.8e-22 Score=206.32 Aligned_cols=237 Identities=10% Similarity=0.090 Sum_probs=172.3
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
.|+|||||||||+|++|+++|++. |.+|++++|........++...+. .....+++++.+|+.+
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~--G~~V~~l~R~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~d~~~ 66 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDL--GHPTFLLVRESTASSNSEKAQLLE--------------SFKASGANIVHGSIDD 66 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCCCCTTTTHHHHHHHH--------------HHHTTTCEEECCCTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCeEEEEECCCccccchhHHHHHH--------------hhccCCcEEEEeeccc
Confidence 578999999999999999999998 678899999876654433332211 1123578899999988
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCcccccccC
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKTY 220 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~~ 220 (762)
.. .....+++++.|+|+++.. ++.++.+++++++.+ +.+.+++.||..........
T Consensus 67 ~~------~~~~~~~~~~~vi~~~~~~------------~~~~~~~~~~a~~~~-~~~~~~~~s~~~~~~~~~~~----- 122 (307)
T d1qyca_ 67 HA------SLVEAVKNVDVVISTVGSL------------QIESQVNIIKAIKEV-GTVKRFFPSEFGNDVDNVHA----- 122 (307)
T ss_dssp HH------HHHHHHHTCSEEEECCCGG------------GSGGGHHHHHHHHHH-CCCSEEECSCCSSCTTSCCC-----
T ss_pred ch------hhhhhhhhceeeeeccccc------------ccchhhHHHHHHHHh-ccccceeeeccccccccccc-----
Confidence 65 6777888999999998753 445566788888887 66777887776433221111
Q ss_pred CCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCCC
Q psy7542 221 PPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDNI 300 (762)
Q Consensus 221 ~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn~ 300 (762)
..+ ...+...+..+|..+.+. +++++|+||+.++|+...++..
T Consensus 123 ---~~~--------------------------~~~~~~~~~~~~~~~~~~---~~~~~i~r~~~v~g~~~~~~~~----- 165 (307)
T d1qyca_ 123 ---VEP--------------------------AKSVFEVKAKVRRAIEAE---GIPYTYVSSNCFAGYFLRSLAQ----- 165 (307)
T ss_dssp ---CTT--------------------------HHHHHHHHHHHHHHHHHH---TCCBEEEECCEEHHHHTTTTTC-----
T ss_pred ---ccc--------------------------ccccccccccccchhhcc---CCCceecccceecCCCccchhh-----
Confidence 000 034566666777766654 8999999999999986543221
Q ss_pred CCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHHhhc
Q psy7542 301 NGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKDIAR 380 (762)
Q Consensus 301 ~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~~~G 380 (762)
++.....+....++++++..+++|+++|+|++++.++.++... ...+||++++ +.+|+.|+++.+.+..|
T Consensus 166 -----~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~~---~~~~~~~~~~--~~~s~~ei~~~~~~~~G 235 (307)
T d1qyca_ 166 -----AGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTL---NKTLYLRLPA--NTLSLNELVALWEKKID 235 (307)
T ss_dssp -----TTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGGGT---TEEEECCCGG--GEEEHHHHHHHHHHHTT
T ss_pred -----hhhhhhhcccceeeecccccccCCcHHHHHHHHHHHhcChhhc---CceeEEeCCC--CccCHHHHHHHHHHHHC
Confidence 2223345556677889999999999999999999998876542 2346777777 88999999999999998
Q ss_pred cCCC
Q psy7542 381 NKVP 384 (762)
Q Consensus 381 ~~~P 384 (762)
.+..
T Consensus 236 ~~~~ 239 (307)
T d1qyca_ 236 KTLE 239 (307)
T ss_dssp SCCE
T ss_pred CCCc
Confidence 7643
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.86 E-value=9.4e-21 Score=196.34 Aligned_cols=228 Identities=19% Similarity=0.173 Sum_probs=160.4
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|||||||||||++|++.|++. + .++++.+..+. +.+|++++
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~--g-~~v~~~~~~~~----------------------------------~~~Dl~~~ 43 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPV--G-NLIALDVHSKE----------------------------------FCGDFSNP 43 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTT--S-EEEEECTTCSS----------------------------------SCCCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--C-CEEEEECCCcc----------------------------------ccCcCCCH
Confidence 68999999999999999999887 3 34555554321 24788765
Q ss_pred CCCCCHHHHHhhcCC--ccEEEEcccccCc---cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccC--CCcc
Q psy7542 142 DLGISAEDRQMLSET--IHIVYHIAATVRF---DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHP--KEKV 214 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~--vDiViH~AA~v~f---~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~--~~~~ 214 (762)
+ .+++++++ +|+||||||.... ........+.|+.++.+++++|++. + .+++++||+.++. ...+
T Consensus 44 ~------~~~~~i~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~~~~~~ss~~~~~~~~~~~ 115 (298)
T d1n2sa_ 44 K------GVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANET-G-AWVVHYSTDYVFPGTGDIP 115 (298)
T ss_dssp H------HHHHHHHHHCCSEEEECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTT-T-CEEEEEEEGGGSCCCTTCC
T ss_pred H------HHHHHHHHcCCCEEEEecccccccccccCccccccccccccccchhhhhcc-c-cccccccccccccCCCCCC
Confidence 4 67777664 5999999997754 3445678899999999999999886 4 5688888874433 3336
Q ss_pred cccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCC
Q psy7542 215 LEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLP 294 (762)
Q Consensus 215 i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~p 294 (762)
.+|...+.|. +.|+.+|..+|..+..+. ....++|++..++....
T Consensus 116 ~~E~~~~~p~-----------------------------~~y~~~k~~~e~~~~~~~---~~~~~~~~~~~~~~~~~--- 160 (298)
T d1n2sa_ 116 WQETDATSPL-----------------------------NVYGKTKLAGEKALQDNC---PKHLIFRTSWVYAGKGN--- 160 (298)
T ss_dssp BCTTSCCCCS-----------------------------SHHHHHHHHHHHHHHHHC---SSEEEEEECSEECSSSC---
T ss_pred CccccccCCC-----------------------------chHhhhhhhhhhhHHhhh---cccccccccceeeccCC---
Confidence 6776555544 789999999999998774 45667777666544211
Q ss_pred CCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHH
Q psy7542 295 GWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIEN 374 (762)
Q Consensus 295 GWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~ 374 (762)
.....+...+..+..... .+....++++++|+++++..++...... ....++||++++ +.+++.++++.
T Consensus 161 ------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~~~~~i~~~~~~-~~~~~~~n~~~~--~~~~~~~~~~~ 229 (298)
T d1n2sa_ 161 ------NFAKTMLRLAKERQTLSV--INDQYGAPTGAELLADCTAHAIRVALNK-PEVAGLYHLVAG--GTTTWHDYAAL 229 (298)
T ss_dssp ------CHHHHHHHHHHHCSEEEE--ECSCEECCEEHHHHHHHHHHHHHHHHHC-GGGCEEEECCCB--SCEEHHHHHHH
T ss_pred ------ccchhhhhhhcccceeec--ccceeecccccchHHHHHHHHHhhhhcc-ccccccccccCC--CceecHHHHHH
Confidence 112223333334443333 3456789999999999988776532211 113689999998 88999999999
Q ss_pred HHHhhc
Q psy7542 375 GKDIAR 380 (762)
Q Consensus 375 i~~~~G 380 (762)
+.+..+
T Consensus 230 i~~~~~ 235 (298)
T d1n2sa_ 230 VFDEAR 235 (298)
T ss_dssp HHHHHH
T ss_pred HHhhhh
Confidence 988773
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.86 E-value=1e-21 Score=196.05 Aligned_cols=230 Identities=13% Similarity=0.070 Sum_probs=159.9
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
.++|||||||||||++++++|++.++.+.|+++.|.... . .....+++++.+|+.+
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~------~------------------~~~~~~~~~~~~d~~~ 58 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQG------K------------------EKIGGEADVFIGDITD 58 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHH------H------------------HHTTCCTTEEECCTTS
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHH------H------------------HhccCCcEEEEeeecc
Confidence 468999999999999999999999877899999996421 1 1123578899999988
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCcc----------------ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEe
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFD----------------DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVS 204 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~----------------~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vS 204 (762)
++ ++.++++++|.|||+|+..... ........+|+.|+.++++.+... ..+.+.+.|
T Consensus 59 ~~------~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s 131 (252)
T d2q46a1 59 AD------SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA-GVKHIVVVG 131 (252)
T ss_dssp HH------HHHHHHTTCSEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH-TCSEEEEEE
T ss_pred cc------ccccccccceeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccc-ccccccccc
Confidence 66 7888999999999999865321 122346788999999999999887 678888888
Q ss_pred CCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeee
Q psy7542 205 TAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSI 284 (762)
Q Consensus 205 Say~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~ 284 (762)
+........+... .....|...+.+.+.+..+. +++++++||+.
T Consensus 132 ~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~---~~~~~ilRp~~ 175 (252)
T d2q46a1 132 SMGGTNPDHPLNK---------------------------------LGNGNILVWKRKAEQYLADS---GTPYTIIRAGG 175 (252)
T ss_dssp ETTTTCTTCGGGG---------------------------------GGGCCHHHHHHHHHHHHHHS---SSCEEEEEECE
T ss_pred ccccCCCCccccc---------------------------------ccccchhhhhhhhhhhhhcc---cccceeecceE
Confidence 7654332211000 00134555555555544333 99999999999
Q ss_pred eccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCCCC-
Q psy7542 285 IIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTANKD- 363 (762)
Q Consensus 285 V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~- 363 (762)
|+|+.......+... + ........++||++|+|++++.++.++.. .+++||++++..
T Consensus 176 v~g~~~~~~~~~~~~-------------~-----~~~~~~~~~~i~~~Dva~a~~~~l~~~~~----~g~~~~i~~~~~~ 233 (252)
T d2q46a1 176 LLDKEGGVRELLVGK-------------D-----DELLQTDTKTVPRADVAEVCIQALLFEEA----KNKAFDLGSKPEG 233 (252)
T ss_dssp EECSCTTSSCEEEES-------------T-----TGGGGSSCCEEEHHHHHHHHHHHTTCGGG----TTEEEEEEECCTT
T ss_pred EECCCcchhhhhhcc-------------C-----cccccCCCCeEEHHHHHHHHHHHhCCccc----cCcEEEEeeCCCC
Confidence 999864321110000 0 00112335689999999999999988765 478999987521
Q ss_pred CcccHHHHHHHHHHhh
Q psy7542 364 FQITWYDIIENGKDIA 379 (762)
Q Consensus 364 ~piT~~el~~~i~~~~ 379 (762)
...++.++.+++.+..
T Consensus 234 ~~~~~~~~~~lf~~i~ 249 (252)
T d2q46a1 234 TSTPTKDFKALFSQVT 249 (252)
T ss_dssp TSCCCCCHHHHHTTCC
T ss_pred CChhHHHHHHHHHHHH
Confidence 3456777766665543
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.85 E-value=1.2e-21 Score=195.68 Aligned_cols=192 Identities=17% Similarity=0.117 Sum_probs=136.1
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
.|+|||||||||||++|+++|++++.-++|+++.|.+... ..++....+|+.+
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~---------------------------~~~~~~~~~d~~~ 54 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE---------------------------HPRLDNPVGPLAE 54 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC---------------------------CTTEECCBSCHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh---------------------------cccccccccchhh
Confidence 4899999999999999999999995334899998865321 2344433444321
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCccccccc
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKT 219 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~ 219 (762)
....+...+|+||||+|.... ......+.+.|+.++.+++++|++. ++++|+++||+.+....
T Consensus 55 --------~~~~~~~~~d~vi~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~v~~~i~~Ss~~~~~~~------- 118 (212)
T d2a35a1 55 --------LLPQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEM-GARHYLVVSALGADAKS------- 118 (212)
T ss_dssp --------HGGGCCSCCSEEEECCCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHT-TCCEEEEECCTTCCTTC-------
T ss_pred --------hhhccccchheeeeeeeeeccccccccccccchhhhhhhcccccccc-ccccccccccccccccc-------
Confidence 233445568999999986532 2344578899999999999999997 89999999998764321
Q ss_pred CCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCC-EEEEeeeeeccCCCCCCCCCCC
Q psy7542 220 YPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMP-CMILRPSIIIPIWKDPLPGWTD 298 (762)
Q Consensus 220 ~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glp-v~IvRPs~V~G~~~eP~pGWid 298 (762)
.+.|+.+|+.+|+.+.+. +++ ++|+||++|+|+......+
T Consensus 119 ---------------------------------~~~y~~~K~~~E~~l~~~---~~~~~~I~Rp~~v~G~~~~~~~~--- 159 (212)
T d2a35a1 119 ---------------------------------SIFYNRVKGELEQALQEQ---GWPQLTIARPSLLFGPREEFRLA--- 159 (212)
T ss_dssp ---------------------------------SSHHHHHHHHHHHHHTTS---CCSEEEEEECCSEESTTSCEEGG---
T ss_pred ---------------------------------ccchhHHHHHHhhhcccc---ccccceeeCCcceeCCcccccHH---
Confidence 167999999999988754 665 9999999999986542110
Q ss_pred CCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 299 NINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 299 n~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
. .+.....+.+. .....|+++|+|++++.++.+...
T Consensus 160 ------~---~~~~~~~~~~~----~~~~~i~v~DvA~ai~~~~~~~~~ 195 (212)
T d2a35a1 160 ------E---ILAAPIARILP----GKYHGIEACDLARALWRLALEEGK 195 (212)
T ss_dssp ------G---GTTCCCC--------CHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred ------H---HHHHHHhhccC----CCCcEEEHHHHHHHHHHHHcCCCC
Confidence 0 01111111111 234569999999999999876554
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.74 E-value=8.6e-18 Score=179.80 Aligned_cols=236 Identities=14% Similarity=0.023 Sum_probs=163.8
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
+.|+|+|||||||+|++|+++|+++ +++|++++|+.++... ..+ ....+++++.||+.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~--G~~V~~l~R~~~~~~~----~~~----------------~~~~~v~~~~gD~~ 59 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAV--GHHVRAQVHSLKGLIA----EEL----------------QAIPNVTLFQGPLL 59 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHT--TCCEEEEESCSCSHHH----HHH----------------HTSTTEEEEESCCT
T ss_pred CCCEEEEECCChHHHHHHHHHHHhC--CCeEEEEECCcchhhh----hhh----------------cccCCCEEEEeeCC
Confidence 4689999999999999999999998 6778999997654321 111 12357999999998
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcccCCCccccccc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYCHPKEKVLEEKT 219 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~~~~~~~i~E~~ 219 (762)
++. +.+..++.+++.+++...... ..|+.++.+++++|+++ +++++++.||.........
T Consensus 60 d~~-----~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~~~~~aa~~a-gv~~~v~~Ss~~~~~~~~~----- 119 (350)
T d1xgka_ 60 NNV-----PLMDTLFEGAHLAFINTTSQA---------GDEIAIGKDLADAAKRA-GTIQHYIYSSMPDHSLYGP----- 119 (350)
T ss_dssp TCH-----HHHHHHHTTCSEEEECCCSTT---------SCHHHHHHHHHHHHHHH-SCCSEEEEEECCCGGGTSS-----
T ss_pred CcH-----HHHHHHhcCCceEEeeccccc---------chhhhhhhHHHHHHHHh-CCCceEEEeeccccccCCc-----
Confidence 853 346778889999988754321 23677789999999998 6777888888643221110
Q ss_pred CCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEeeeeeccCCCCCCCCCCCC
Q psy7542 220 YPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILRPSIIIPIWKDPLPGWTDN 299 (762)
Q Consensus 220 ~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvRPs~V~G~~~eP~pGWidn 299 (762)
.....|..+|...|..+.+. +++++++||+..++....+..+.
T Consensus 120 -------------------------------~~~~~~~~~k~~~~~~~~~~---~~~~~~vr~~~~~~~~~~~~~~~--- 162 (350)
T d1xgka_ 120 -------------------------------WPAVPMWAPKFTVENYVRQL---GLPSTFVYAGIYNNNFTSLPYPL--- 162 (350)
T ss_dssp -------------------------------CCCCTTTHHHHHHHHHHHTS---SSCEEEEEECEEGGGCBSSSCSS---
T ss_pred -------------------------------ccchhhhhhHHHHHHHHHhh---ccCceeeeeceeecccccccccc---
Confidence 01146778888888776654 89999999999877543221110
Q ss_pred CCCchHHHHHHhcCCeE-EEeeCCCcccccccH-HHHHHHHHHHhhcccCCCCCCceEEEecCCCCCcccHHHHHHHHHH
Q psy7542 300 INGPTGLLIGAGKGIIR-TMYCDYSTCADFLPV-DVLVNGVLLSTWNFLSNPGNTMRVINLTANKDFQITWYDIIENGKD 377 (762)
Q Consensus 300 ~~gp~~li~~~~~G~l~-~i~gd~~~~~d~VpV-DdvA~aii~a~~~~~~~~~~~~~iyNi~s~~~~piT~~el~~~i~~ 377 (762)
... .....|... ..+.+++....++.+ +|++.++..++.+.... ..+++|+++++ .+|+.|+++.+.+
T Consensus 163 -~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~~~~--~~G~~~~~~g~---~~T~~eia~~l~~ 232 (350)
T d1xgka_ 163 -FQM----ELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQK--WNGHRIALTFE---TLSPVQVCAAFSR 232 (350)
T ss_dssp -CBE----EECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHHH--HTTCEEEECSE---EECHHHHHHHHHH
T ss_pred -ccc----cccccccceeeecccCCCcceEEEeHHHHHHHHHHHHhCChhh--cCCeEEEEeCC---cCCHHHHHHHHHH
Confidence 000 011223222 344567777888876 89999998888654210 03679999864 5999999999999
Q ss_pred hhccCCC
Q psy7542 378 IARNKVP 384 (762)
Q Consensus 378 ~~G~~~P 384 (762)
.+|.+..
T Consensus 233 ~~G~~v~ 239 (350)
T d1xgka_ 233 ALNRRVT 239 (350)
T ss_dssp HHTSCEE
T ss_pred HHCCcce
Confidence 9987643
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.60 E-value=2.4e-14 Score=146.41 Aligned_cols=212 Identities=14% Similarity=0.090 Sum_probs=151.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||++|||||++.||++++++|++. +.+|++..|.. ++++++.+ +...++.++.+|+
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~--G~~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~Dv 61 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAE--GAKVVFGDILD------EEGKAMAA--------------ELADAARYVHLDV 61 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH--------------HTGGGEEEEECCT
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH--------------HhhCcceEEEeec
Confidence 58999999999999999999999999 78899999863 34443321 1235788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH-c--CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ-M--IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~-~--~~lk~fV 201 (762)
++++ ++++++ ..+|++||+|+.... .+.++..+++|+.|+..+.+.+.. + ++-.++|
T Consensus 62 ~~~~------~v~~~~~~~~~~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii 135 (244)
T d1nffa_ 62 TQPA------QWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSII 135 (244)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEE
Confidence 9876 454443 368999999997643 255778999999999999886643 2 2346899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... ....|+.||+..+.+.+..+. .|+.+
T Consensus 136 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~ltk~lA~el~~~gIrV 177 (244)
T d1nffa_ 136 NISSIEGLAGTV--------------------------------------ACHGYTATKFAVRGLTKSTALELGPSGIRV 177 (244)
T ss_dssp EECCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred eccccccccccc--------------------------------------cccchhhHHHHHHHHHHHHHHHhcccCEEE
Confidence 999987643221 014799999999888877765 38999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
..|-||.|-.+..+..+ .. .. .....-+...+|+|++++.++..... -..++++.
T Consensus 178 N~I~PG~i~T~~~~~~~----~~-------------~~------~~pl~R~~~p~diA~~v~fL~s~~s~--~itG~~i~ 232 (244)
T d1nffa_ 178 NSIHPGLVKTPMTDWVP----ED-------------IF------QTALGRAAEPVEVSNLVVYLASDESS--YSTGAEFV 232 (244)
T ss_dssp EEEEECCBCSGGGTTSC----TT-------------CS------CCSSSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEeeCCccChhHhhhh----HH-------------HH------hccccCCCCHHHHHHHHHHHhChhhC--CCcCCEEE
Confidence 99999987554322111 10 00 01112367789999999988864432 12578999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 233 vDGG 236 (244)
T d1nffa_ 233 VDGG 236 (244)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8876
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.58 E-value=4.8e-14 Score=144.95 Aligned_cols=218 Identities=12% Similarity=0.017 Sum_probs=149.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||++|||||++.||++++++|++. |.+|++..|.. ++++++.+ +...++.++.+|+
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~------~~~~~~~~--------------~~~~~~~~~~~Dv 60 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAA--GARVVLADVLD------EEGAATAR--------------ELGDAARYQHLDV 60 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH--------------TTGGGEEEEECCT
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH--------------HhCCceEEEEccc
Confidence 58999999999999999999999998 78899999863 34444322 1235788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ ++++++ ..+|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-.++|
T Consensus 61 ~~~~------~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II 134 (254)
T d1hdca_ 61 TIEE------DWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIV 134 (254)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeec
Confidence 9875 555544 368999999997542 2457779999999999998887532 2447999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... ....|+.||+..+.+.+..+. .|+++
T Consensus 135 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~e~a~~gIrV 176 (254)
T d1hdca_ 135 NISSAAGLMGLA--------------------------------------LTSSYGASKWGVRGLSKLAAVELGTDRIRV 176 (254)
T ss_dssp EECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred ccccchhccccc--------------------------------------chhhHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 999987643211 015799999998888877765 38999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
..+-||.|-.+ +...............-...+-.+-.+|+|++++.++...... -.++++.
T Consensus 177 N~I~PG~v~T~-----------------~~~~~~~~~~~~~~~~~pl~R~g~~PedvA~~v~fL~S~~a~~--itG~~i~ 237 (254)
T d1hdca_ 177 NSVHPGMTYTP-----------------MTAETGIRQGEGNYPNTPMGRVGNEPGEIAGAVVKLLSDTSSY--VTGAELA 237 (254)
T ss_dssp EEEEECSBCCH-----------------HHHHHTCCCSTTSCTTSTTSSCB-CHHHHHHHHHHHHSGGGTT--CCSCEEE
T ss_pred EEeeeCcccCc-----------------cchhcCHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHhchhhCC--CCCceEE
Confidence 99999977432 1111111000000000000011124689999999888654321 2578999
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 238 vDGG 241 (254)
T d1hdca_ 238 VDGG 241 (254)
T ss_dssp ESTT
T ss_pred eCCC
Confidence 9877
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.57 E-value=3.9e-14 Score=144.94 Aligned_cols=220 Identities=14% Similarity=0.076 Sum_probs=147.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+++||||++.||+.+++.|++. |.+|++..|.... ..++.. .....++..+.+|+
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~--Ga~V~~~~~~~~~-----~~~~~~--------------~~~g~~~~~~~~Dv 61 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFAVE--GADIAIADLVPAP-----EAEAAI--------------RNLGRRVLTVKCDV 61 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCCH-----HHHHHH--------------HHTTCCEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCchH-----HHHHHH--------------HHcCCcEEEEEeeC
Confidence 68999999999999999999999999 7888999986532 111111 12246889999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++.++ ..+|++||+|+.... .+.++..+++|+.|+..+.+++... .+-.++|
T Consensus 62 s~~~------~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv 135 (247)
T d2ew8a1 62 SQPG------DVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRII 135 (247)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCcc
Confidence 9876 555543 368999999997542 2567789999999999998877542 2346899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... ....|+.||+..+.+.+..+. .|+.+
T Consensus 136 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~ltk~lA~ela~~gIrV 177 (247)
T d2ew8a1 136 NLTSTTYWLKIE--------------------------------------AYTHYISTKAANIGFTRALASDLGKDGITV 177 (247)
T ss_dssp EECCGGGGSCCS--------------------------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred ccccchhcccCc--------------------------------------ccccchhhhccHHHHHHHHHHHhcccCeEE
Confidence 999986643211 014799999988888877665 38999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
..+.||.|-.+..+.. ... .... .........--+...+|+|++++.++..... --.++++.
T Consensus 178 N~I~PG~i~T~~~~~~-------~~~-~~~~--------~~~~~~~~l~r~~~pedvA~~v~fL~S~~s~--~itG~~i~ 239 (247)
T d2ew8a1 178 NAIAPSLVRTATTEAS-------ALS-AMFD--------VLPNMLQAIPRLQVPLDLTGAAAFLASDDAS--FITGQTLA 239 (247)
T ss_dssp EEEEECCC----------------------------------CTTSSSCSCCCTHHHHHHHHHHTSGGGT--TCCSCEEE
T ss_pred EEEeeCCCCCcccccc-------ccc-hhHH--------HHHHHhccCCCCCCHHHHHHHHHHHhCchhc--CCcCCeEE
Confidence 9999998755432210 000 0000 0000001111245578999999988765432 12578888
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 240 vDGG 243 (247)
T d2ew8a1 240 VDGG 243 (247)
T ss_dssp ESSS
T ss_pred ECCC
Confidence 8776
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=6.9e-14 Score=142.80 Aligned_cols=219 Identities=13% Similarity=0.138 Sum_probs=153.2
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.++||+||||||++.||++++++|++. |.+|++..|.. ++++++.+ + ..++..+.+|
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~--G~~V~~~~r~~------~~l~~~~~---------~------~~~~~~~~~D 60 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHAT--GARVVAVSRTQ------ADLDSLVR---------E------CPGIEPVCVD 60 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH---------H------STTCEEEECC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCH------HHHHHHHH---------h------cCCCeEEEEe
Confidence 369999999999999999999999999 78899999863 34444321 1 2467889999
Q ss_pred cCCCCCCCCHHHHHhhcC---CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH-c---CCccEEEEE
Q psy7542 138 VAVPDLGISAEDRQMLSE---TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ-M---IHLQLFVYV 203 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~---~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~-~---~~lk~fV~v 203 (762)
+++++ +++++++ .+|++||+|+.... .+.++..+++|+.|+..+.+.+.. + ++-.++|++
T Consensus 61 v~d~~------~v~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~i 134 (244)
T d1pr9a_ 61 LGDWE------ATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNV 134 (244)
T ss_dssp TTCHH------HHHHHHTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCCHH------HHHHHHHHhCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeec
Confidence 99875 5665554 58999999997643 255778999999999998887653 2 244689999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~I 279 (762)
||..+..... ....|+.||+..+.+.+..+. .|+++..
T Consensus 135 sS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~ 176 (244)
T d1pr9a_ 135 SSQCSQRAVT--------------------------------------NHSVYCSTKGALDMLTKVMALELGPHKIRVNA 176 (244)
T ss_dssp CCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred cccccccccc--------------------------------------chhhhhhhHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 9987643221 014799999999988887765 3899999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
|.||.|-.+..+ ................ ..--+...+|+|++++.++.+... --.++++++.
T Consensus 177 I~PG~v~T~~~~-------~~~~~~~~~~~~~~~~---------pl~R~~~peevA~~v~fL~S~~a~--~itG~~i~vD 238 (244)
T d1pr9a_ 177 VNPTVVMTSMGQ-------ATWSDPHKAKTMLNRI---------PLGKFAEVEHVVNAILFLLSDRSG--MTTGSTLPVE 238 (244)
T ss_dssp EEECCBCSHHHH-------TTSCSHHHHHHHHTTC---------TTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEES
T ss_pred EeeCcCcChHHh-------hhccChHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCchhC--CcCCcEEEEC
Confidence 999987544221 1111111222222211 112366789999999988765432 1257888887
Q ss_pred CC
Q psy7542 360 AN 361 (762)
Q Consensus 360 s~ 361 (762)
+|
T Consensus 239 GG 240 (244)
T d1pr9a_ 239 GG 240 (244)
T ss_dssp TT
T ss_pred cc
Confidence 76
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.56 E-value=3.9e-14 Score=145.55 Aligned_cols=220 Identities=14% Similarity=0.125 Sum_probs=150.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||++.||..++++|++. |.+|+++.|...... .+.++.. .....++.++..|+
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~--G~~vii~~r~~~~~~---~~~~~~~-------------~~~~~~~~~~~~d~ 64 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKR--NLKNFVILDRVENPT---ALAELKA-------------INPKVNITFHTYDV 64 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--CCSEEEEEESSCCHH---HHHHHHH-------------HCTTSEEEEEECCT
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEEECCcccHH---HHHHHHh-------------hCCCCCEEEEEeec
Confidence 58999999999999999999999999 777788888765432 2222211 12245789999999
Q ss_pred CCCCCCCCHHHHHhh-------cCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHH-c-----CCccEEEEEeC
Q psy7542 139 AVPDLGISAEDRQML-------SETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQ-M-----IHLQLFVYVST 205 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l-------~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~-~-----~~lk~fV~vSS 205 (762)
+.+. ++++.+ ...+|++||+|+... ++.++..+++|+.|+.++.+++.. + +...++|++||
T Consensus 65 ~~~~-----~~~~~~~~~~~~~~g~iDilvnnAG~~~-~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS 138 (254)
T d1sbya1 65 TVPV-----AESKKLLKKIFDQLKTVDILINGAGILD-DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS 138 (254)
T ss_dssp TSCH-----HHHHHHHHHHHHHHSCCCEEEECCCCCC-TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred CCCH-----HHHHHHHHHHHHHcCCCCEEEeCCCCCC-HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEec
Confidence 8532 123322 346899999999764 577899999999999999888764 2 12367999999
Q ss_pred CcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEEEe
Q psy7542 206 AYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMILR 281 (762)
Q Consensus 206 ay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~IvR 281 (762)
..+..... . ...|+.||+....+.+..+.. |+.+..|-
T Consensus 139 ~~~~~~~~----------~----------------------------~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~ 180 (254)
T d1sbya1 139 VTGFNAIH----------Q----------------------------VPVYSASKAAVVSFTNSLAKLAPITGVTAYSIN 180 (254)
T ss_dssp GGGTSCCT----------T----------------------------SHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEE
T ss_pred hhhccCCC----------C----------------------------CHHHHHHHHHHHHHHHHHHhhccccCeEEEEEE
Confidence 87643211 0 147999999888887776652 89999999
Q ss_pred eeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 282 PSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 282 Ps~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
||.|..+..+-...|.+ ....+..... .....+.+++|++++.+..... .+.++.+..|
T Consensus 181 PG~v~T~~~~~~~~~~~----~~~~~~~~~~------------~~~~~~~e~va~~~~~~~~~~~-----tG~vi~vdgG 239 (254)
T d1sbya1 181 PGITRTPLVHTFNSWLD----VEPRVAELLL------------SHPTQTSEQCGQNFVKAIEANK-----NGAIWKLDLG 239 (254)
T ss_dssp ECSEESHHHHSCCCGGG----SCTTHHHHHT------------TSCCEEHHHHHHHHHHHHHHCC-----TTCEEEEETT
T ss_pred eCCCcCccccccccchh----HHHHHHhccc------------cCCCCCHHHHHHHHHHhhhCCC-----CCCEEEECCC
Confidence 99886542111111100 0011111111 1234578999999998876553 3789998877
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.55 E-value=2.6e-14 Score=146.41 Aligned_cols=216 Identities=12% Similarity=0.042 Sum_probs=146.8
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.++||+||||||++.||+.++++|++. +.+|++..|.... .+..++ .+..++.+|
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~--G~~V~~~~~~~~~---~~~~~~--------------------~~~~~~~~D 56 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFARE--GALVALCDLRPEG---KEVAEA--------------------IGGAFFQVD 56 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSTTH---HHHHHH--------------------HTCEEEECC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHH---HHHHHH--------------------cCCeEEEEe
Confidence 368999999999999999999999999 7889999987532 111111 134578999
Q ss_pred cCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 138 VAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
+++++ ++++++ ..+|++||+||.... .+.++..+++|+.|+.++.+++... .+-.++
T Consensus 57 v~~~~------~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~I 130 (248)
T d2d1ya1 57 LEDER------ERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAI 130 (248)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEE
T ss_pred CCCHH------HHHHHHHHHHHhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccc
Confidence 99865 454443 368999999997542 2457789999999999999888642 234689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... ....|+.||+..+.+.+..+. .|+.
T Consensus 131 i~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~ltk~lA~el~~~gIr 172 (248)
T d2d1ya1 131 VNVASVQGLFAEQ--------------------------------------ENAAYNASKGGLVNLTRSLALDLAPLRIR 172 (248)
T ss_dssp EEECCGGGTSBCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred ccccccccccccc--------------------------------------ccchhHHHHHHHHHHHHHHHHHhhhhCcE
Confidence 9999987643221 015799999988888877665 3899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHh-cCCeE-EE---eeCCCcccccccHHHHHHHHHHHhhcccCCCCC
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAG-KGIIR-TM---YCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGN 351 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~-~G~l~-~i---~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~ 351 (762)
+..+.||.|-.+. ..... .+... .. ..+.....-+...+|+|+++..++..... -.
T Consensus 173 VN~I~PG~v~T~~-----------------~~~~~~~~~~~~~~~~~~~~~~pl~R~~~pedia~~v~fL~S~~s~--~i 233 (248)
T d2d1ya1 173 VNAVAPGAIATEA-----------------VLEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVLFLASEKAS--FI 233 (248)
T ss_dssp EEEEEECSBCCHH-----------------HHHHHC--------CHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGT--TC
T ss_pred EEEEeeCCCCCch-----------------HHHHhhcCCCHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhc--CC
Confidence 9999998764321 11110 00000 00 00001112355689999999988764432 12
Q ss_pred CceEEEecCC
Q psy7542 352 TMRVINLTAN 361 (762)
Q Consensus 352 ~~~iyNi~s~ 361 (762)
.++++++.+|
T Consensus 234 tG~~i~vDGG 243 (248)
T d2d1ya1 234 TGAILPVDGG 243 (248)
T ss_dssp CSCEEEESTT
T ss_pred CCcEEEcCcC
Confidence 5789999877
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.54 E-value=5e-14 Score=145.09 Aligned_cols=234 Identities=12% Similarity=0.075 Sum_probs=149.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||++|||||++.||+.++++|++. |.+|++..|... ++++++.+ .+. .....++.++.+|+
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~--Ga~V~~~~r~~~-----~~~~~~~~-----~~~-----~~~g~~~~~~~~Dv 64 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQ--GADIVLNGFGDA-----AEIEKVRA-----GLA-----AQHGVKVLYDGADL 64 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEECCSCH-----HHHHHHHH-----HHH-----HHHTSCEEEECCCT
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCcH-----HHHHHHHH-----HHH-----HhcCCcEEEEECCC
Confidence 58999999999999999999999999 788999998642 22222111 011 11246889999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++.++ ..+|++||+||.... .+.++..+++|+.|+..+.+.+... .+-.++|
T Consensus 65 ~~~~------~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv 138 (260)
T d1x1ta1 65 SKGE------AVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRII 138 (260)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEe
Confidence 9876 555544 368999999997542 2557789999999999888876532 2346899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv 277 (762)
++||..+..... . ...|+.||+..+.+.+..+.. |+.+
T Consensus 139 ~isS~~~~~~~~----------~----------------------------~~~Y~asKaal~~lt~~lA~el~~~gIrV 180 (260)
T d1x1ta1 139 NIASAHGLVASA----------N----------------------------KSAYVAAKHGVVGFTKVTALETAGQGITA 180 (260)
T ss_dssp EECCGGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHTTTTEEE
T ss_pred ecccccceeccC----------C----------------------------cchhhhhhhhHHHhHHHHHHHhchhCcEE
Confidence 999987643211 0 147999999988888877662 8999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
..+.||.|-.+..+... .......+.-.. ..............-+...+|+|++++.++..... --.+++++
T Consensus 181 N~I~PG~i~T~~~~~~~---~~~~~~~~~~~~---~~~~~~~~~~~Pl~R~g~pediA~~v~fL~S~~a~--~itG~~i~ 252 (260)
T d1x1ta1 181 NAICPGWVRTPLVEKQI---SALAEKNGVDQE---TAARELLSEKQPSLQFVTPEQLGGTAVFLASDAAA--QITGTTVS 252 (260)
T ss_dssp EEEEECCBCC------------------------------CHHHHCTTCCCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEecCCCCChhhhhhh---hhhhhhcCCChH---HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhC--CCcCCEEE
Confidence 99999987554321100 000000000000 00000000001112356789999999988865432 12578888
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 253 vDGG 256 (260)
T d1x1ta1 253 VDGG 256 (260)
T ss_dssp ESTT
T ss_pred ECcc
Confidence 8876
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=4.8e-14 Score=143.90 Aligned_cols=217 Identities=13% Similarity=0.081 Sum_probs=150.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+++||||++.||++++++|++. |.+|++..|.. ++++++.+ ....++..+.+|+
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~--G~~Vv~~~r~~------~~l~~~~~--------------~~~~~~~~~~~Dv 59 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAAR--GAKVIGTATSE------NGAQAISD--------------YLGANGKGLMLNV 59 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSH------HHHHHHHH--------------HHGGGEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCH------HHHHHHHH--------------HhCCCCcEEEEEe
Confidence 58999999999999999999999999 78889998853 34443321 1134678899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ ++++++ ..+|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-.++|
T Consensus 60 ~~~~------~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II 133 (243)
T d1q7ba_ 60 TDPA------SIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRII 133 (243)
T ss_dssp TCHH------HHHHHHHHHHHHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred cCHH------HhhhhhhhhhcccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEee
Confidence 9865 444443 368999999987542 2467788999999999999888532 2346899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... ....|+.||+..+.+.+..+. .|+.+
T Consensus 134 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~ela~~gIrV 175 (243)
T d1q7ba_ 134 TIGSVVGTMGNG--------------------------------------GQANYAAAKAGLIGFSKSLAREVASRGITV 175 (243)
T ss_dssp EECCHHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred eecchhhcCCCC--------------------------------------CCHHHHHHHHHHHHHHHHHHHHhCccCeEE
Confidence 999986532211 015799999998888877765 38999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
..+.||.|-.+... .. .......+... ...--+...+|+|+++..++..... --.+++++
T Consensus 176 N~I~PG~i~T~~~~-------~~--~~~~~~~~~~~---------~pl~R~~~pedvA~~v~fL~S~~s~--~itGq~i~ 235 (243)
T d1q7ba_ 176 NVVAPGFIETDMTR-------AL--SDDQRAGILAQ---------VPAGRLGGAQEIANAVAFLASDEAA--YITGETLH 235 (243)
T ss_dssp EEEEECSBCCHHHH-------TS--CHHHHHHHHTT---------CTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEecceEechhhh-------hh--hhhHHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCchhc--CCcCCeEE
Confidence 99999977433211 11 11111111111 1112356789999999988865432 12578888
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 236 vdGG 239 (243)
T d1q7ba_ 236 VNGG 239 (243)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8776
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.54 E-value=3e-14 Score=144.97 Aligned_cols=209 Identities=11% Similarity=0.093 Sum_probs=145.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||++.||+.++++|++. |.+|++..|.... ..++..+.+|+
T Consensus 5 l~gK~~lITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~----------------------------~~~~~~~~~Dv 54 (237)
T d1uzma1 5 FVSRSVLVTGGNRGIGLAIAQRLAAD--GHKVAVTHRGSGA----------------------------PKGLFGVEVDV 54 (237)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSSCC----------------------------CTTSEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCcch----------------------------hcCceEEEEec
Confidence 69999999999999999999999999 7889999997532 24677899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ ++++++ ..+|++||+||.... .+.++..+++|+.|+..+.+.+... .+-.++|
T Consensus 55 ~~~~------~v~~~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv 128 (237)
T d1uzma1 55 TDSD------AVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMI 128 (237)
T ss_dssp TCHH------HHHHHHHHHHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceE
Confidence 9876 444443 368999999997532 2567789999999998888766432 2446899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... ....|+.||+..+.+.+..+. .|+.+
T Consensus 129 ~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~e~~~~gIrV 170 (237)
T d1uzma1 129 FIGSVSGLWGIG--------------------------------------NQANYAASKAGVIGMARSIARELSKANVTA 170 (237)
T ss_dssp EECCCCC-------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EEcchhhccCCc--------------------------------------ccHHHHHHHHHHHHHHHHHHhhhhcCCcee
Confidence 999986643211 115799999988888877665 38999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
..+.||.|-.+.... . +......... . ....-+...+|+|++++.++...... -.++++.
T Consensus 171 N~I~PG~v~T~~~~~-------~--~~~~~~~~~~-~--------~pl~R~~~pedvA~~v~fL~S~~s~~--itG~~i~ 230 (237)
T d1uzma1 171 NVVAPGYIDTDMTRA-------L--DERIQQGALQ-F--------IPAKRVGTPAEVAGVVSFLASEDASY--ISGAVIP 230 (237)
T ss_dssp EEEEECSBCCHHHHH-------S--CHHHHHHHGG-G--------CTTCSCBCHHHHHHHHHHHHSGGGTT--CCSCEEE
T ss_pred eeeeeCcCCChhhhc-------c--CHHHHHHHHh-c--------CCCCCCcCHHHHHHHHHHHhCchhcC--CcCCeEE
Confidence 999999774432110 0 1111111111 1 11123566799999999888654321 1578888
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 231 vdGG 234 (237)
T d1uzma1 231 VDGG 234 (237)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8776
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.54 E-value=9.7e-14 Score=141.53 Aligned_cols=218 Identities=14% Similarity=0.121 Sum_probs=150.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||++|||||++.||+.++++|++. |.+|++..|.. ++++++.+ ...++..+.+|+
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~------~~l~~~~~---------------~~~~~~~~~~Dv 59 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHAS--GAKVVAVTRTN------SDLVSLAK---------------ECPGIEPVCVDL 59 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH---------------HSTTCEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH---------------hcCCCeEEEEeC
Confidence 58999999999999999999999999 78899999863 33433321 124688899999
Q ss_pred CCCCCCCCHHHHHhhcC---CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH-c---CCccEEEEEe
Q psy7542 139 AVPDLGISAEDRQMLSE---TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ-M---IHLQLFVYVS 204 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~---~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~-~---~~lk~fV~vS 204 (762)
++++ +++++++ .+|++||+||.... .+.++..+++|+.|+..+.+.+.. + +.-.++|++|
T Consensus 60 ~~~~------~v~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~is 133 (242)
T d1cyda_ 60 GDWD------ATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVS 133 (242)
T ss_dssp TCHH------HHHHHHTTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEEC
T ss_pred CCHH------HHHHHHHHcCCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccc
Confidence 9876 5666655 58999999997542 245778999999999999887643 1 2345899999
Q ss_pred CCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEE
Q psy7542 205 TAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMIL 280 (762)
Q Consensus 205 Say~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~Iv 280 (762)
|..+..... ....|+.||+..+.+.+..+. .|+++..+
T Consensus 134 S~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I 175 (242)
T d1cyda_ 134 SMVAHVTFP--------------------------------------NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSV 175 (242)
T ss_dssp CGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred hhhccccCC--------------------------------------ccccccchHHHHHHHHHHHHHHhCccCeecccC
Confidence 986543211 015799999999988887766 38999999
Q ss_pred eeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 281 RPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 281 RPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
-||.|-.+... ................ ...-+...+|+|++++.++..... -..++++.+.+
T Consensus 176 ~PG~i~T~~~~-------~~~~~~~~~~~~~~~~---------pl~R~~~peeva~~v~fL~S~~s~--~itG~~i~vDG 237 (242)
T d1cyda_ 176 NPTVVLTDMGK-------KVSADPEFARKLKERH---------PLRKFAEVEDVVNSILFLLSDRSA--STSGGGILVDA 237 (242)
T ss_dssp EECCBTTHHHH-------HHTCCHHHHHHHHHHS---------TTSSCBCHHHHHHHHHHHHSGGGT--TCCSSEEEEST
T ss_pred CCCCccCHHHH-------hhcCCHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCchhc--CcCCceEEeCc
Confidence 99977543211 0111111222221111 112356789999999988765432 12578888877
Q ss_pred C
Q psy7542 361 N 361 (762)
Q Consensus 361 ~ 361 (762)
|
T Consensus 238 G 238 (242)
T d1cyda_ 238 G 238 (242)
T ss_dssp T
T ss_pred c
Confidence 6
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.54 E-value=5.8e-14 Score=143.92 Aligned_cols=207 Identities=15% Similarity=0.164 Sum_probs=143.0
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHH-HHHHhcChhHHHHHhhhhcccccCCeEEE
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRER-LEEIFQSPLYEALKKEQSESAIFEKVIPI 134 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eR-l~~ll~~~~f~~l~~~~~~~~~~~kV~~V 134 (762)
.|-.+.+||||||+|.||..++++|+++ +. +|+++.|+.......+. ++++ .....++.++
T Consensus 5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~--Ga~~vvl~~R~~~~~~~~~~~~~~l---------------~~~g~~v~~~ 67 (259)
T d2fr1a1 5 EWKPTGTVLVTGGTGGVGGQIARWLARR--GAPHLLLVSRSGPDADGAGELVAEL---------------EALGARTTVA 67 (259)
T ss_dssp CCCCCSEEEEETTTSHHHHHHHHHHHHH--TCSEEEEEESSGGGSTTHHHHHHHH---------------HHTTCEEEEE
T ss_pred ccCCcCEEEEECCCcHHHHHHHHHHHHC--CCCEEEEEeCCccCHHHHHHHHHHH---------------Hhcccccccc
Confidence 3456789999999999999999999999 66 68888886433322222 2222 1224679999
Q ss_pred EeecCCCCCCCCHHHHHhhcC------CccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHcCCccEEE
Q psy7542 135 NGDVAVPDLGISAEDRQMLSE------TIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFV 201 (762)
Q Consensus 135 ~GDl~~~~LGLs~~~l~~l~~------~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV 201 (762)
.+|+++++ ++..+.+ .+|.|||+|+..... +.+...+++|+.|+.++.++.... +..+||
T Consensus 68 ~~Dv~d~~------~~~~~~~~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~-~~~~iv 140 (259)
T d2fr1a1 68 ACDVTDRE------SVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFV 140 (259)
T ss_dssp ECCTTCHH------HHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEE
T ss_pred ccccchHH------HHHHhhccccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc-CCceEe
Confidence 99999876 4555433 379999999976531 345667899999999999887765 567999
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHcCCCEEEEe
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEAGMPCMILR 281 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~glpv~IvR 281 (762)
++||..+..... ....|+.+|+..|.+.++.+..|++++.|.
T Consensus 141 ~~SS~a~~~g~~--------------------------------------~~~~YaAaka~l~~la~~~~~~Gi~v~~I~ 182 (259)
T d2fr1a1 141 LFSSFASAFGAP--------------------------------------GLGGYAPGNAYLDGLAQQRRSDGLPATAVA 182 (259)
T ss_dssp EEEEHHHHTCCT--------------------------------------TCTTTHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eecchhhccCCc--------------------------------------ccHHHHHHHHhHHHHHHHHHhCCCCEEECC
Confidence 999986532211 014799999999999988877799999999
Q ss_pred eeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccC
Q psy7542 282 PSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLS 347 (762)
Q Consensus 282 Ps~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~ 347 (762)
||.+.++. ..+. .. .... ...-...++.+++++++..++.....
T Consensus 183 pg~~~~~g------~~~~-----~~-~~~~----------~~~G~~~~~~~~~~~~l~~~l~~~~~ 226 (259)
T d2fr1a1 183 WGTWAGSG------MAEG-----PV-ADRF----------RRHGVIEMPPETACRALQNALDRAEV 226 (259)
T ss_dssp ECCBC------------------------C----------TTTTEECBCHHHHHHHHHHHHHTTCS
T ss_pred CCcccCCc------cccc-----hH-HHHH----------HhcCCCCCCHHHHHHHHHHHHhCCCc
Confidence 99775441 1110 00 0000 01113457899999999888876544
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.53 E-value=7.4e-14 Score=144.04 Aligned_cols=223 Identities=14% Similarity=0.040 Sum_probs=150.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+++||||++.||++++++|++. +.+|++..|... +.++++.+ .+ .....++..+.+|+
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~--G~~Vv~~~r~~~-----~~~~~~~~-----~~------~~~g~~~~~~~~Dv 66 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATE--KAKVVVNYRSKE-----DEANSVLE-----EI------KKVGGEAIAVKGDV 66 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCH-----HHHHHHHH-----HH------HHTTCEEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcH-----HHHHHHHH-----HH------HhcCCcEEEEEccC
Confidence 68999999999999999999999998 788999999642 12222111 11 11235788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH-c---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ-M---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~-~---~~lk~f 200 (762)
++++ ++++++ ..+|++||+|+.... .+.++..+++|+.|+..+.+.+.. + +.-..+
T Consensus 67 t~~~------~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~I 140 (261)
T d1geea_ 67 TVES------DVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTV 140 (261)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccc
Confidence 9876 555444 368999999997642 245778999999999998887653 2 223468
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... . ...|+.||+..+.+.+..+. .|+.
T Consensus 141 v~isS~~~~~~~~----------~----------------------------~~~Y~asKaal~~lt~~lA~e~~~~gIr 182 (261)
T d1geea_ 141 INMSSVHEKIPWP----------L----------------------------FVHYAASKGGMKLMTETLALEYAPKGIR 182 (261)
T ss_dssp EEECCGGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred cccccchhcccCc----------c----------------------------ccccccCCccchhhHHHHHHHhhhhCcE
Confidence 8999986643211 0 14799999999888877765 3899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+..|-||.|-.+... .............. . ....-+...+|+|++++.++..... -..++++
T Consensus 183 VN~I~PG~v~T~~~~-------~~~~~~~~~~~~~~-~--------~pl~R~~~pediA~~v~fL~S~~s~--~itG~~i 244 (261)
T d1geea_ 183 VNNIGPGAINTPINA-------EKFADPEQRADVES-M--------IPMGYIGEPEEIAAVAAWLASSEAS--YVTGITL 244 (261)
T ss_dssp EEEEEECSBCSGGGH-------HHHHSHHHHHHHHT-T--------CTTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEeeCcCcCHhHh-------hhcCCHHHHHHHHh-c--------CCCCCCCCHHHHHHHHHHHhCchhc--CCcCCeE
Confidence 999999977543210 00000111111111 1 1112356789999999988865432 1257899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+.+|
T Consensus 245 ~vDGG 249 (261)
T d1geea_ 245 FADGG 249 (261)
T ss_dssp EESTT
T ss_pred EECCC
Confidence 99887
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.53 E-value=4.2e-13 Score=136.74 Aligned_cols=214 Identities=17% Similarity=0.064 Sum_probs=148.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+++||||++.||+.++++|++. |.+|++..|.. +++++..+ .-++..+.+|+
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~--G~~V~~~~r~~------~~l~~~~~----------------~~~~~~~~~Dv 58 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKE--GARLVACDIEE------GPLREAAE----------------AVGAHPVVMDV 58 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH----------------TTTCEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH----------------HcCCeEEEEec
Confidence 58999999999999999999999999 78899999863 44444322 12567889999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ ++++++ ..+|++||+||.... .+.++..+++|+.|+..+.+.+... .+-..++
T Consensus 59 ~~~~------~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~ 132 (242)
T d1ulsa_ 59 ADPA------SVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIV 132 (242)
T ss_dssp TCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceee
Confidence 9876 555443 368999999997542 2457789999999999999887643 2345667
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
.+||+...+.. ....|+.||+..+.+.+..+. .|+++
T Consensus 133 ~~ss~~~~~~~---------------------------------------~~~~Y~asKaal~~ltk~lA~ela~~gIrV 173 (242)
T d1ulsa_ 133 LTASRVYLGNL---------------------------------------GQANYAASMAGVVGLTRTLALELGRWGIRV 173 (242)
T ss_dssp EECCGGGGCCT---------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred eeccccccCCC---------------------------------------CCcchHHHHHHHHHHHHHHHHHHhhhCcEE
Confidence 77775322110 015799999998888877665 38999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
..+.||.|-.+.... .+........... ...-+...+|+|++++.++.+... --.++++.
T Consensus 174 N~I~PG~v~T~~~~~---------~~~~~~~~~~~~~---------pl~R~~~pedia~~v~fL~S~~s~--~itG~~i~ 233 (242)
T d1ulsa_ 174 NTLAPGFIETRMTAK---------VPEKVREKAIAAT---------PLGRAGKPLEVAYAALFLLSDESS--FITGQVLF 233 (242)
T ss_dssp EEEEECSBCCTTTSS---------SCHHHHHHHHHTC---------TTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEeeCcccChhhhc---------CCHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHhchhhC--CCCCcEEE
Confidence 999999885543221 1222222222211 112355678999999988865432 11578888
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 234 vDGG 237 (242)
T d1ulsa_ 234 VDGG 237 (242)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8776
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.53 E-value=1.2e-13 Score=141.52 Aligned_cols=220 Identities=12% Similarity=0.103 Sum_probs=151.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+++|++|||||++.||++++++|++. +.+|++..|.. ++++++.+ .+ .....++..+.+|+
T Consensus 8 lenKvalITGas~GIG~a~a~~la~~--Ga~V~~~~r~~------~~l~~~~~-----~l------~~~g~~~~~~~~Dv 68 (251)
T d2c07a1 8 GENKVALVTGAGRGIGREIAKMLAKS--VSHVICISRTQ------KSCDSVVD-----EI------KSFGYESSGYAGDV 68 (251)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTT--SSEEEEEESSH------HHHHHHHH-----HH------HTTTCCEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCH------HHHHHHHH-----HH------HhcCCcEEEEEccC
Confidence 47999999999999999999999988 77889999853 23333211 11 12235789999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ ++++++ ..+|++||+|+.... .+.++..+++|+.|+..+.+++... .+-.++|
T Consensus 69 t~~~------~v~~~~~~~~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IV 142 (251)
T d2c07a1 69 SKKE------EISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRII 142 (251)
T ss_dssp TCHH------HHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEE
Confidence 9876 555444 368999999997542 2567789999999999998876532 2446899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+..... ....|+.||+..+.+.+..+. .|+++
T Consensus 143 nisS~~~~~~~~--------------------------------------~~~~Y~asKaal~~ltr~lA~el~~~gIrV 184 (251)
T d2c07a1 143 NISSIVGLTGNV--------------------------------------GQANYSSSKAGVIGFTKSLAKELASRNITV 184 (251)
T ss_dssp EECCTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred EECCHHhcCCCC--------------------------------------CCHHHHHHHHHHHHHHHHHHHHhhhhCeEE
Confidence 999986532211 014799999999988887766 38999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
..|.||.|-.+..+ .. +......+.... ...-+...+|+|++++.++..... --.++++.
T Consensus 185 N~V~PG~v~T~~~~-------~~--~~~~~~~~~~~~---------pl~R~~~pedvA~~v~fL~S~~s~--~itG~~i~ 244 (251)
T d2c07a1 185 NAIAPGFISSDMTD-------KI--SEQIKKNIISNI---------PAGRMGTPEEVANLACFLSSDKSG--YINGRVFV 244 (251)
T ss_dssp EEEEECSBCC------------C--CHHHHHHHHTTC---------TTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EEEccCCEeccccc-------cc--CHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCchhC--CCcCcEEE
Confidence 99999988554321 11 122222222211 112356789999999888765432 12478888
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 245 vDGG 248 (251)
T d2c07a1 245 IDGG 248 (251)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8776
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.53 E-value=1.7e-13 Score=141.03 Aligned_cols=226 Identities=12% Similarity=0.065 Sum_probs=151.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||++.||++++++|++. |.+|++..|.. +++++..+ .+ ......+.++.+|+
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~--G~~V~i~~r~~------~~l~~~~~-----~~------~~~~~~~~~~~~D~ 64 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGL--GARVYTCSRNE------KELDECLE-----IW------REKGLNVEGSVCDL 64 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HH------HHTTCCEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HH------HhcCCCceEEEeec
Confidence 68999999999999999999999999 77889999863 33333221 11 12236788899999
Q ss_pred CCCCCCCCHHHHHhh-------c-CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 139 AVPDLGISAEDRQML-------S-ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l-------~-~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
++++ +++++ . ..+|+++|+|+.... .+.++..+++|+.++..+.+++... ++..++
T Consensus 65 s~~~------~~~~~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~i 138 (258)
T d1ae1a_ 65 LSRT------ERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNV 138 (258)
T ss_dssp TCHH------HHHHHHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccccc
Confidence 9876 44333 2 248999999997642 2567889999999999998877532 355699
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|++||..+..... . ...|+.+|+.-+.+.+..+.. |+.
T Consensus 139 i~isS~~~~~~~~----------~----------------------------~~~Y~~sK~al~~lt~~lA~el~~~gIr 180 (258)
T d1ae1a_ 139 IFLSSIAGFSALP----------S----------------------------VSLYSASKGAINQMTKSLACEWAKDNIR 180 (258)
T ss_dssp EEECCGGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred ccccccccccccc----------c----------------------------chhHHHHHHHHHHHHHHHHHhcCcCcEE
Confidence 9999987643211 1 157999999988888877663 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+..+.||.|..+..+. +.............+.... ..--+...+|+|++++.++.+.... -.++.+
T Consensus 181 vN~I~PG~i~T~~~~~---~~~~~~~~~~~~~~~~~~~---------plgR~~~pediA~~v~fL~S~~s~~--itG~~i 246 (258)
T d1ae1a_ 181 VNSVAPGVILTPLVET---AIKKNPHQKEEIDNFIVKT---------PMGRAGKPQEVSALIAFLCFPAASY--ITGQII 246 (258)
T ss_dssp EEEEEECSBC----------------CHHHHHHHHHHS---------TTCSCBCHHHHHHHHHHHHSGGGTT--CCSCEE
T ss_pred EEEEeeCcccCcchhh---hhhhhhhhHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhChhhCC--CcCcEE
Confidence 9999999886553221 1111111222222222111 1123678999999999988544321 147788
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+.+|
T Consensus 247 ~vDGG 251 (258)
T d1ae1a_ 247 WADGG 251 (258)
T ss_dssp EESTT
T ss_pred EeCCC
Confidence 88766
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.53 E-value=2.5e-14 Score=147.12 Aligned_cols=222 Identities=15% Similarity=0.096 Sum_probs=149.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||++|||||++.||++++++|++. |.+|++..|.. ++++++.+ +...++..+.+|+
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~------~~l~~~~~--------------~~~~~~~~~~~Dv 60 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVRE--GARVAIADINL------EAARATAA--------------EIGPAACAIALDV 60 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHT--TEEEEEEESCH------HHHHHHHH--------------HHCTTEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH--------------HhCCceEEEEeeC
Confidence 58999999999999999999999999 78899999853 34444321 1236788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH-c---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ-M---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~-~---~~lk~f 200 (762)
++++ ++++++ ..+|++||+||.... .+.++..+++|+.|+..+.+.+.. + ++-.++
T Consensus 61 t~~~------~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~I 134 (256)
T d1k2wa_ 61 TDQA------SIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKI 134 (256)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCcc
Confidence 9876 555544 368999999997642 245778999999999999886532 2 234689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... ....|+.||+..+.+.+..+. .|++
T Consensus 135 v~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~el~~~gIr 176 (256)
T d1k2wa_ 135 INMASQAGRRGEA--------------------------------------LVGVYCATKAAVISLTQSAGLNLIRHGIN 176 (256)
T ss_dssp EEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred ccccchhhccccc--------------------------------------cccchhhhhhHHHHHHHHHHHHhcccCeE
Confidence 9999986643211 015799999999888877765 3899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHh--cCCeE----EEeeCCCcccccccHHHHHHHHHHHhhcccCCCC
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAG--KGIIR----TMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPG 350 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~--~G~l~----~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~ 350 (762)
+..|.||.|-.+.-. .+..... .+... ..........-+...+|+|++++.++..... -
T Consensus 177 VN~V~PG~i~T~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~~~p~evA~~v~fL~S~~a~--~ 241 (256)
T d1k2wa_ 177 VNAIAPGVVDGEHWD-------------GVDAKFADYENLPRGEKKRQVGAAVPFGRMGRAEDLTGMAIFLATPEAD--Y 241 (256)
T ss_dssp EEEEEECCBCCTTHH-------------HHHHHHHHHHTCCTTHHHHHHHHHSTTSSCBCHHHHHHHHHHTTSGGGT--T
T ss_pred EEEEecCCCCchhhh-------------hhhhhhhhhccCChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhC--C
Confidence 999999876443210 1110000 00000 0000000012255689999999987754432 1
Q ss_pred CCceEEEecCC
Q psy7542 351 NTMRVINLTAN 361 (762)
Q Consensus 351 ~~~~iyNi~s~ 361 (762)
-.++++.+.+|
T Consensus 242 iTG~~i~vDGG 252 (256)
T d1k2wa_ 242 IVAQTYNVDGG 252 (256)
T ss_dssp CCSCEEEESTT
T ss_pred ccCceEEECcc
Confidence 25788988877
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.53 E-value=3.4e-13 Score=139.33 Aligned_cols=225 Identities=13% Similarity=0.135 Sum_probs=152.5
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
-++||++|||||++.||+.++++|++. |.+|++..|.. ++++++.+ .+ ....++.++.+|
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~------~~~~~~~~-----~l-------~~~~~~~~~~~D 62 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRY--GAKVVIADIAD------DHGQKVCN-----NI-------GSPDVISFVHCD 62 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HH-------CCTTTEEEEECC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----Hh-------cCCCceEEEEcc
Confidence 368999999999999999999999999 78899999853 33433321 00 113468889999
Q ss_pred cCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc---------cccHHHHHHHhHHHHHHHHHHHHH-c--CCcc
Q psy7542 138 VAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF---------DDYMQTYVFLNTRGTRDMLNLSKQ-M--IHLQ 198 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f---------~~~l~~~~~~NV~GT~~LLelA~~-~--~~lk 198 (762)
+++++ ++++++ ..+|++||+||.... .+.++..+++|+.|+..+.+.+.. + .+-.
T Consensus 63 v~~~~------~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g 136 (268)
T d2bgka1 63 VTKDE------DVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKG 136 (268)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCE
T ss_pred CCCHH------HHHHHHHHHHHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCC
Confidence 99875 555544 368999999996431 135777899999999999988754 2 2446
Q ss_pred EEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cC
Q psy7542 199 LFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AG 274 (762)
Q Consensus 199 ~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~g 274 (762)
++|++||..+..... + ....|+.||+..+.+.+..+. .|
T Consensus 137 ~ii~iss~~~~~~~~---------~----------------------------~~~~Y~asKaal~~lt~~lA~el~~~g 179 (268)
T d2bgka1 137 SIVFTASISSFTAGE---------G----------------------------VSHVYTATKHAVLGLTTSLCTELGEYG 179 (268)
T ss_dssp EEEEECCGGGTCCCT---------T----------------------------SCHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred Ccccccccccccccc---------c----------------------------cccccchhHHHHHhCHHHHHHHhChhC
Confidence 899999986543211 0 013699999998888877765 38
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHh-cCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAG-KGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~-~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
+++..+.||.|-.+...... .....-..... ... ...--+...+|+|++++.++..... --.+
T Consensus 180 IrVN~I~PG~i~T~~~~~~~------~~~~~~~~~~~~~~~--------~~~gr~~~pedvA~~v~fL~S~~s~--~itG 243 (268)
T d2bgka1 180 IRVNCVSPYIVASPLLTDVF------GVDSSRVEELAHQAA--------NLKGTLLRAEDVADAVAYLAGDESK--YVSG 243 (268)
T ss_dssp EEEEEEEESCCSCCCCTTSS------SCCHHHHHHHHHHTC--------SSCSCCCCHHHHHHHHHHHHSGGGT--TCCS
T ss_pred eEEEecCCCCccChHHhhhh------cCCHHHHHHHHHhcc--------ccCCCCcCHHHHHHHHHHHhChhhC--CccC
Confidence 99999999988665432111 11111111111 111 0112356789999999988865432 1257
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++.+.+|
T Consensus 244 q~i~VDGG 251 (268)
T d2bgka1 244 LNLVIDGG 251 (268)
T ss_dssp CEEEESTT
T ss_pred ceEEECcC
Confidence 89999887
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=6.4e-14 Score=144.02 Aligned_cols=221 Identities=12% Similarity=0.065 Sum_probs=151.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||++|||||++.||++++++|++. |.+|++..|.. ++++++.+ .+ .....++..+.+|+
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~------~~~~~~~~-----~l------~~~g~~~~~~~~Dv 69 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATA--GASVVVSDINA------DAANHVVD-----EI------QQLGGQAFACRCDI 69 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTT--TCEEEEEESCH------HHHHHHHH-----HH------HHTTCCEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HH------HHcCCcEEEEEccC
Confidence 58999999999999999999999998 78889999853 23333221 11 12235789999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~ 202 (762)
++++ ++++++ ..+|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-.++|+
T Consensus 70 s~~~------~~~~~~~~~~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~ 143 (255)
T d1fmca_ 70 TSEQ------ELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILT 143 (255)
T ss_dssp TCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccccccccc
Confidence 9876 444443 468999999997532 2457779999999999998876432 13357899
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~ 278 (762)
+||..+..... ....|+.||+..+.+.+..+. .|+.+.
T Consensus 144 isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~el~~~gIrVN 185 (255)
T d1fmca_ 144 ITSMAAENKNI--------------------------------------NMTSYASSKAAASHLVRNMAFDLGEKNIRVN 185 (255)
T ss_dssp ECCGGGTCCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEE
T ss_pred ccccchhcccc--------------------------------------ccccchhHHHHHHHHHHHHHHHhCccCeEEE
Confidence 99986643221 015799999998888877765 389999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
.|-||.|-.+... ....+ .......... ...-+...+|+|++++.++..... --.++++.+
T Consensus 186 ~I~PG~i~T~~~~-------~~~~~-e~~~~~~~~~---------pl~R~g~pedvA~~v~fL~S~~s~--~itG~~i~v 246 (255)
T d1fmca_ 186 GIAPGAILTDALK-------SVITP-EIEQKMLQHT---------PIRRLGQPQDIANAALFLCSPAAS--WVSGQILTV 246 (255)
T ss_dssp EEEECSBCSHHHH-------TTCCH-HHHHHHHHTC---------SSCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEE
T ss_pred EeeeCcCcChHhh-------ccCCH-HHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCchhc--CCcCCEEEE
Confidence 9999987543211 11111 2222222211 011245679999999998865432 125789999
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.+|
T Consensus 247 DGG 249 (255)
T d1fmca_ 247 SGG 249 (255)
T ss_dssp STT
T ss_pred CcC
Confidence 887
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.51 E-value=2.1e-13 Score=139.72 Aligned_cols=223 Identities=14% Similarity=0.057 Sum_probs=150.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||++|||||++.||+.++++|++. |.+|++..|.. +++++..+ .+. .....++..+.+|+
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~--Ga~V~i~~r~~------~~~~~~~~-----~l~-----~~~g~~~~~~~~Dv 64 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEA--GCSVVVASRNL------EEASEAAQ-----KLT-----EKYGVETMAFRCDV 64 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHH-----HHHCCCEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HHH-----HHhCCcEEEEEccC
Confidence 58999999999999999999999999 78899999863 23332211 111 12245788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH-c--CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ-M--IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~-~--~~lk~fV 201 (762)
++++ ++++++ ..+|++||+||.... .+.++..+++|+.|+..+.+.+.. + .+-.++|
T Consensus 65 ~~~~------~v~~~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii 138 (251)
T d1vl8a_ 65 SNYE------EVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSII 138 (251)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccccccccc
Confidence 9876 555443 368999999997532 245777999999999999988754 3 2345899
Q ss_pred EEeCCcc-cCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 202 YVSTAYC-HPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 202 ~vSSay~-~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
++||..+ ..... ....|+.||+..+.+.+..+. .|++
T Consensus 139 ~i~S~~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~e~~~~gIr 180 (251)
T d1vl8a_ 139 NIGSLTVEEVTMP--------------------------------------NISAYAASKGGVASLTKALAKEWGRYGIR 180 (251)
T ss_dssp EECCGGGTCCCSS--------------------------------------SCHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred ccccchhccccCc--------------------------------------cccchHHHHHhHHHHHHHHHHHhcccCeE
Confidence 9998643 21110 014799999998888877765 3899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+..+.||.|-.+..+ ................ ..--+...+|+|++++.++..... --.++++
T Consensus 181 VN~I~PG~i~T~~~~-------~~~~~~~~~~~~~~~~---------pl~R~~~pedvA~~v~fL~S~~a~--~itG~~i 242 (251)
T d1vl8a_ 181 VNVIAPGWYRTKMTE-------AVFSDPEKLDYMLKRI---------PLGRTGVPEDLKGVAVFLASEEAK--YVTGQII 242 (251)
T ss_dssp EEEEEECCBCSTTTH-------HHHTCHHHHHHHHHTC---------TTSSCBCGGGGHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEeeCcccCHHHH-------hccCCHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHhCchhC--CCcCcEE
Confidence 999999987544221 1111111222222211 011244568899999888765432 1257888
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+.+|
T Consensus 243 ~vDGG 247 (251)
T d1vl8a_ 243 FVDGG 247 (251)
T ss_dssp EESTT
T ss_pred EeCcC
Confidence 88776
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1e-13 Score=142.10 Aligned_cols=221 Identities=14% Similarity=0.070 Sum_probs=148.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||++|||||++.||+++++.|++. +.+|++..|.. ++++++.+ ...++..+.+|+
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~------~~~~~~~~---------------~~~~~~~~~~Dv 60 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNS--GARVVICDKDE------SGGRALEQ---------------ELPGAVFILCDV 60 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH---------------HCTTEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH---------------hcCCCeEEEccC
Confidence 68999999999999999999999999 78899998853 33433311 124678999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccC----cc----ccHHHHHHHhHHHHHHHHHHHHHc--CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVR----FD----DYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~----f~----~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV 201 (762)
++++ ++++++ ..+|++||+|+... +. +.++..+++|+.|+..+.+++... ++-.++|
T Consensus 61 s~~~------~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii 134 (250)
T d1ydea1 61 TQED------DVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVI 134 (250)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCHH------HHHHHHHHHHHhcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCc
Confidence 9876 555544 36899999999542 21 347788999999999998877542 1125899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
++||..+.... | ....|+.||+..+.+.+..+. .|+.+
T Consensus 135 ~isS~~~~~~~----------~----------------------------~~~~Y~asKaal~~lt~~lA~e~a~~gIrV 176 (250)
T d1ydea1 135 NISSLVGAIGQ----------A----------------------------QAVPYVATKGAVTAMTKALALDESPYGVRV 176 (250)
T ss_dssp EECCHHHHHCC----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred ccccccccccc----------c----------------------------CcchhHHHHhhHHHHHHHHHHHhcccCeEE
Confidence 99998653211 0 115799999988888877765 38999
Q ss_pred EEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 278 MILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
..|.||.|-.+..+...+ ....+...+....... ...-+...+|+|++++.++.+ .. --.++++.
T Consensus 177 N~I~PG~i~T~~~~~~~~---~~~~~~~~~~~~~~~~---------pl~R~g~p~eva~~v~fL~Sd-a~--~itG~~i~ 241 (250)
T d1ydea1 177 NCISPGNIWTPLWEELAA---LMPDPRASIREGMLAQ---------PLGRMGQPAEVGAAAVFLASE-AN--FCTGIELL 241 (250)
T ss_dssp EEEEECSBCCHHHHHHHT---TSSSHHHHHHHHHHTS---------TTSSCBCHHHHHHHHHHHHHH-CT--TCCSCEEE
T ss_pred EEEeeCCCCChhHHHHhh---cCCCHHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHhCc-cC--CCcCCeEE
Confidence 999999774321000000 0001112222221111 112356789999999888754 22 12578888
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 242 vDGG 245 (250)
T d1ydea1 242 VTGG 245 (250)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8876
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.51 E-value=1.1e-13 Score=141.77 Aligned_cols=220 Identities=14% Similarity=0.049 Sum_probs=149.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||++|||||++.||++++++|++. |.+|++..|.. ++++++.+ + -....++.++.+|+
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~------~~~~~~~~---------~---~~~~~~~~~~~~Dv 63 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEE--GAKVMITGRHS------DVGEKAAK---------S---VGTPDQIQFFQHDS 63 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH---------H---HCCTTTEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH---------H---hCCCCcEEEEEccC
Confidence 68999999999999999999999999 78889999853 23333221 0 01235789999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH-cC--Cc-cEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ-MI--HL-QLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~-~~--~l-k~f 200 (762)
++++ ++++++ ..+|++||+|+.... .+.++..+++|+.|+..+.+++.. +. +- .++
T Consensus 64 ~~~~------~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~I 137 (251)
T d1zk4a1 64 SDED------GWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASI 137 (251)
T ss_dssp TCHH------HHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCce
Confidence 9876 454443 368999999997532 245777999999999999988754 21 22 478
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH------cC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME------AG 274 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~------~g 274 (762)
|++||..+..... . ...|+.||+..+.+.+..+. .|
T Consensus 138 i~isS~~~~~~~~----------~----------------------------~~~Y~asKaal~~lt~~lA~e~~l~~~g 179 (251)
T d1zk4a1 138 INMSSIEGFVGDP----------S----------------------------LGAYNASKGAVRIMSKSAALDCALKDYD 179 (251)
T ss_dssp EEECCGGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred EeeeccceeccCC----------C----------------------------chhHHHHHHHHhcchHHHHHHHhcCCCc
Confidence 9999986643211 0 14799999999888776542 27
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
+.+..|.||.|-.+..+ ....+... ..... . ...--+...+|+|++++.++..... --.++
T Consensus 180 IrVN~I~PG~i~T~~~~-------~~~~~~~~-~~~~~-~--------~pl~R~~~pedvA~~v~fL~S~~s~--~itG~ 240 (251)
T d1zk4a1 180 VRVNTVHPGYIKTPLVD-------DLPGAEEA-MSQRT-K--------TPMGHIGEPNDIAYICVYLASNESK--FATGS 240 (251)
T ss_dssp EEEEEEEECCBCCHHHH-------TSTTHHHH-HTSTT-T--------CTTSSCBCHHHHHHHHHHHHSGGGT--TCCSC
T ss_pred EEEEEEeCCCCCChhHH-------hcCCHHHH-HHHHh-C--------CCCCCCcCHHHHHHHHHHHhCchhC--CCcCc
Confidence 99999999987543211 11111111 11000 0 1112356789999999988765432 12578
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
++.+.+|
T Consensus 241 ~i~vDGG 247 (251)
T d1zk4a1 241 EFVVDGG 247 (251)
T ss_dssp EEEESTT
T ss_pred EEEECcc
Confidence 8888776
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.51 E-value=8.8e-14 Score=143.26 Aligned_cols=223 Identities=16% Similarity=0.125 Sum_probs=150.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+++||||++.||++++++|++. +.+|++..|.. ++++++.+ .+ .....++..+.+|+
T Consensus 6 L~GK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~------~~l~~~~~-----~~------~~~g~~~~~~~~Dv 66 (259)
T d2ae2a_ 6 LEGCTALVTGGSRGIGYGIVEELASL--GASVYTCSRNQ------KELNDCLT-----QW------RSKGFKVEASVCDL 66 (259)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HH------HHTTCEEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HH------HhcCCCceEEEeeC
Confidence 58999999999999999999999998 78899999853 33433321 11 12235788899999
Q ss_pred CCCCCCCCHHHHHhhc-------C-CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------E-TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~-~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
++++ ++++++ . .+|++||+|+.... .+.++..+++|+.|+..+.+++... .+-.++
T Consensus 67 ~~~~------~v~~~~~~~~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~I 140 (259)
T d2ae2a_ 67 SSRS------ERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNV 140 (259)
T ss_dssp TCHH------HHHHHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccc
Confidence 9876 343332 2 58999999997542 2457789999999999998877542 244689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... ....|+.||+..+.+.+..+. .|+.
T Consensus 141 i~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~el~~~gIr 182 (259)
T d2ae2a_ 141 VFISSVSGALAVP--------------------------------------YEAVYGATKGAMDQLTRCLAFEWAKDNIR 182 (259)
T ss_dssp EEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEE
T ss_pred ccccccccccccc--------------------------------------cccchHHHHHHHHHHHHHHHHHhCcCceE
Confidence 9999986643211 115799999999888887766 2899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCc--hHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGP--TGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp--~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
+..|.||.|-.+..+. ....+ ...+....... ...-+.-.+|+|++++.++..... --.++
T Consensus 183 VN~I~PG~i~T~~~~~------~~~~~~~~~~~~~~~~~~---------pl~R~g~pedvA~~v~fL~S~~s~--~itG~ 245 (259)
T d2ae2a_ 183 VNGVGPGVIATSLVEM------TIQDPEQKENLNKLIDRC---------ALRRMGEPKELAAMVAFLCFPAAS--YVTGQ 245 (259)
T ss_dssp EEEEEECSBCSHHHHH------HTTSHHHHHHHHHHHHTS---------TTCSCBCHHHHHHHHHHHHSGGGT--TCCSC
T ss_pred EEEeeeCcccCHHHHh------hhhchhhHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCchhC--CCcCc
Confidence 9999999774432110 00011 11111111111 112255689999999888765432 12478
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
++.+.+|
T Consensus 246 ~i~VDGG 252 (259)
T d2ae2a_ 246 IIYVDGG 252 (259)
T ss_dssp EEEESTT
T ss_pred EEEECCC
Confidence 8888776
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.50 E-value=1.7e-13 Score=141.03 Aligned_cols=221 Identities=14% Similarity=0.110 Sum_probs=138.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||++.||+.++++|++. |.+|++..|.. +++++..+ .+ .....++..+.+|+
T Consensus 6 LkgK~alVTGas~GIG~aiA~~la~~--Ga~V~~~~r~~------~~l~~~~~-----~~------~~~~~~~~~~~~Dv 66 (259)
T d1xq1a_ 6 LKAKTVLVTGGTKGIGHAIVEEFAGF--GAVIHTCARNE------YELNECLS-----KW------QKKGFQVTGSVCDA 66 (259)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HH------HHTTCCEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HH------HhcCCceEEEeccC
Confidence 58999999999999999999999999 78899999863 33433321 11 11235789999999
Q ss_pred CCCCCCCCHHHHHhhc--------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS--------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~--------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
++++ ++++++ ..+|++||+||.... .+.++..+++|+.|+..+.+.+... .+-.++
T Consensus 67 ~~~~------~v~~~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~I 140 (259)
T d1xq1a_ 67 SLRP------EREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNI 140 (259)
T ss_dssp TSHH------HHHHHHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccc
Confidence 9865 333322 358999999997542 2557789999999999998877542 244689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... ....|+.||+..+.+.+..+. .|+.
T Consensus 141 v~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~e~~~~gIr 182 (259)
T d1xq1a_ 141 IFMSSIAGVVSAS--------------------------------------VGSIYSATKGALNQLARNLACEWASDGIR 182 (259)
T ss_dssp EEEC------------------------------------------------CCHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred ccccccccccccc--------------------------------------ccccccccccchhhhhHHHHHHhcccCeE
Confidence 9999986543211 115799999998888877765 3899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+..|-||.|-.+..+. ... ......... . ...--+...+|+|++++.++..... --.++++
T Consensus 183 VN~V~PG~i~T~~~~~-------~~~-~~~~~~~~~----~-----~pl~R~~~pedvA~~v~fL~S~~s~--~iTG~~i 243 (259)
T d1xq1a_ 183 ANAVAPAVIATPLAEA-------VYD-DEFKKVVIS----R-----KPLGRFGEPEEVSSLVAFLCMPAAS--YITGQTI 243 (259)
T ss_dssp EEEEECCSCC------------------------------------------CCGGGGHHHHHHHTSGGGT--TCCSCEE
T ss_pred EEEeccCcccCHHhhh-------hch-HHHHHHHHh----C-----CCCCCCcCHHHHHHHHHHHhCchhc--CCcCcEE
Confidence 9999999875442211 000 000000000 0 0011244567899999888754432 1147788
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.+|
T Consensus 244 ~vDGG 248 (259)
T d1xq1a_ 244 CVDGG 248 (259)
T ss_dssp ECCCC
T ss_pred EeCCC
Confidence 88766
|
| >d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Serine/threonine-protein kinase Sgk3, Cisk species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.50 E-value=2.8e-14 Score=129.16 Aligned_cols=104 Identities=19% Similarity=0.298 Sum_probs=81.8
Q ss_pred ccccceeee-cCCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhch
Q psy7542 522 ISVSGYRLI-ECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCK 600 (762)
Q Consensus 522 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (762)
|+|+++... +..|+|++|.|+|...+.+|.|.||||||..||+ ++++.+.
T Consensus 7 i~I~~~~~~~~~~k~~~~Y~I~v~~~~~~~~V~rRYsdF~~L~~-----------------------------~L~~~~~ 57 (116)
T d1xtea_ 7 VSIPSSDEHREKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYN-----------------------------SLKKQFP 57 (116)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEHHHHHHHHH-----------------------------HHHHHCG
T ss_pred EEeCCceEeccCCCCEEEEEEEEEECCcEEEEEeeHHHHHHHHH-----------------------------HHHHHCC
Confidence 455554433 4568999999999999999999999999999999 5655553
Q ss_pred hhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC-CCCChhHHHHHHHHHHHHHHHHHhcCCC
Q psy7542 601 YFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI-RSNQPKVLDERRHLLEIYLKEMFKFGPS 679 (762)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (762)
. +..|.+|+|.. .+++++++++||..||.||+.++.....
T Consensus 58 ~---------------------------------------~~~p~~~~~~~~~~~~~~~l~~Rr~~L~~yL~~l~~~~~l 98 (116)
T d1xtea_ 58 A---------------------------------------MALKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPEL 98 (116)
T ss_dssp G---------------------------------------GCCCCCCSCCSSCTTCHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred C---------------------------------------CCCCCCCcccccCccCHHHHHHHHHHHHHHHHHHHhCHhh
Confidence 2 25565555554 5688999999999999999999986544
Q ss_pred h--HHHHhhhCCCCCC
Q psy7542 680 R--NQVLAFLGVNSKN 693 (762)
Q Consensus 680 ~--~~~~~~~~~~~~~ 693 (762)
+ ..+..||.+++..
T Consensus 99 ~~~~~~~~FL~~d~~~ 114 (116)
T d1xtea_ 99 YNHPDVRAFLQMDSPR 114 (116)
T ss_dssp HTSHHHHHHTTTTCGG
T ss_pred hcChHHHhhcCCCCCC
Confidence 4 7899999998543
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=4.8e-14 Score=144.76 Aligned_cols=231 Identities=14% Similarity=0.082 Sum_probs=150.2
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
+||++|||||++.||+.++++|++. |.+|++..|.. +++++... .+.+ .....++.++.+|++
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~------~~~~~~~~-----~l~~----~~~~~~~~~~~~Dv~ 64 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLK--GAKVALVDWNL------EAGVQCKA-----ALHE----QFEPQKTLFIQCDVA 64 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHTT----TSCGGGEEEEECCTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HHHH----hcCCCcEEEEEeecC
Confidence 6999999999999999999999999 78899999964 23322211 0111 112357899999999
Q ss_pred CCCCCCCHHHHHhhc-------CCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHc-C-----CccEEEEEeCC
Q psy7542 140 VPDLGISAEDRQMLS-------ETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQM-I-----HLQLFVYVSTA 206 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~-~-----~lk~fV~vSSa 206 (762)
+++ +++.++ ..+|++||+|+... ..+++..+++|+.++..+.+++... . .-.++|++||.
T Consensus 65 ~~~------~v~~~~~~~~~~~G~iDilVnnAg~~~-~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~ 137 (254)
T d2gdza1 65 DQQ------QLRDTFRKVVDHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL 137 (254)
T ss_dssp SHH------HHHHHHHHHHHHHSCCCEEEECCCCCC-SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred CHH------HHHHHHHHHHHHcCCcCeecccccccc-cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccH
Confidence 875 555444 36899999999754 4678899999999998888777542 1 12569999998
Q ss_pred cccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHH------HHHcCCCEEEE
Q psy7542 207 YCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTE------YMEAGMPCMIL 280 (762)
Q Consensus 207 y~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~------~~~~glpv~Iv 280 (762)
.+..... . ...|+.||+..+.+.+. ++..|+++..|
T Consensus 138 ~~~~~~~----------~----------------------------~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I 179 (254)
T d2gdza1 138 AGLMPVA----------Q----------------------------QPVYCASKHGIVGFTRSAALAANLMNSGVRLNAI 179 (254)
T ss_dssp GGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred hhccCCC----------C----------------------------ccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 7643211 1 14799999998888763 22338999999
Q ss_pred eeeeeccCCCCCCCCCCCC-CCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 281 RPSIIIPIWKDPLPGWTDN-INGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 281 RPs~V~G~~~eP~pGWidn-~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
.||.|-.+.-+..+. +. ..........+... -...-+...+|+|++++.++.+... .+++..+.
T Consensus 180 ~PG~i~T~~~~~~~~--~~~~~~~~~~~~~~~~~---------~p~~r~~~pedvA~~v~fL~s~~~i----tG~~i~Vd 244 (254)
T d2gdza1 180 CPGFVNTAILESIEK--EENMGQYIEYKDHIKDM---------IKYYGILDPPLIANGLITLIEDDAL----NGAIMKIT 244 (254)
T ss_dssp EESCBSSHHHHGGGC--HHHHGGGGGGHHHHHHH---------HHHHCCBCHHHHHHHHHHHHHCTTC----SSCEEEEE
T ss_pred EcCCCCChhhhhccc--cccccccHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHHcCCCC----CCCEEEEC
Confidence 999774321100000 00 00000000000000 0011245678999999999886553 58899998
Q ss_pred CCCCCcccHH
Q psy7542 360 ANKDFQITWY 369 (762)
Q Consensus 360 s~~~~piT~~ 369 (762)
+| ..+.|+
T Consensus 245 GG--~~~~~~ 252 (254)
T d2gdza1 245 TS--KGIHFQ 252 (254)
T ss_dssp TT--TEEEEC
T ss_pred CC--Ceeecc
Confidence 87 555543
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.48 E-value=3.4e-13 Score=140.04 Aligned_cols=226 Identities=15% Similarity=0.123 Sum_probs=146.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||++.||++++++|++. |.+|++..|.. ++++++.+ +...++..+.+|+
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~------~~l~~~~~--------------~~~~~~~~~~~Dv 60 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAE--GAKVAVLDKSA------ERLAELET--------------DHGDNVLGIVGDV 60 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH--------------HHGGGEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH--------------HcCCCeeEEeccc
Confidence 58999999999999999999999999 78899999853 45544321 1235789999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCcc------------ccHHHHHHHhHHHHHHHHHHHHHc--CCc
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRFD------------DYMQTYVFLNTRGTRDMLNLSKQM--IHL 197 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~------------~~l~~~~~~NV~GT~~LLelA~~~--~~l 197 (762)
++++ ++++++ ..+|++||+|+..... +.++..+++|+.|+..+.+.+... ++-
T Consensus 61 ~~~~------~~~~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~ 134 (276)
T d1bdba_ 61 RSLE------DQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR 134 (276)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT
T ss_pred ccHH------HHHHHHHHHHHHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 9875 454443 3689999999964321 136788999999999988877532 112
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---C
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---G 274 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---g 274 (762)
.++|++||..+.... |. ...|+.||+..+.+.+..+.. +
T Consensus 135 g~iI~i~S~~~~~~~----------~~----------------------------~~~Y~asKaal~~ltr~lA~ela~~ 176 (276)
T d1bdba_ 135 GNVIFTISNAGFYPN----------GG----------------------------GPLYTAAKHAIVGLVRELAFELAPY 176 (276)
T ss_dssp CEEEEECCGGGTSTT----------SS----------------------------CHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCceeeeechhccCC----------CC----------------------------CchHHHHHHHHHHHHHHHHHHhhcc
Confidence 578888887553211 11 147999999988888777663 6
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCCC-CCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhh-cccCCCCCC
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDNI-NGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTW-NFLSNPGNT 352 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn~-~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~-~~~~~~~~~ 352 (762)
+++..|.||.|-.+...+...+.... .....+...+.. .. ..--+...+|+|++++.++. .... --.
T Consensus 177 IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------PlgR~g~peeva~~v~fL~S~~~a~--~it 245 (276)
T d1bdba_ 177 VRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKS-VL--------PIGRMPEVEEYTGAYVFFATRGDAA--PAT 245 (276)
T ss_dssp CEEEEEEECCCCSCCCCCGGGC---------CHHHHHTT-TC--------TTSSCCCGGGGSHHHHHHHCHHHHT--TCS
T ss_pred eEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHh-cC--------CCCCCcCHHHHHHHHHHHcCCcccC--Cee
Confidence 99999999988554322211100000 000011111111 10 01124456889998887663 2221 015
Q ss_pred ceEEEecCC
Q psy7542 353 MRVINLTAN 361 (762)
Q Consensus 353 ~~iyNi~s~ 361 (762)
++++++.+|
T Consensus 246 G~~i~VDGG 254 (276)
T d1bdba_ 246 GALLNYDGG 254 (276)
T ss_dssp SCEEEESSS
T ss_pred CcEEEECcC
Confidence 789999876
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.48 E-value=4.8e-13 Score=137.21 Aligned_cols=222 Identities=12% Similarity=0.053 Sum_probs=147.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+++||||++.||+.+++.|++. +.+|++..|.. ++++++.+ +...+..++.+|+
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~~~~------~~~~~~~~--------------~~~~~~~~~~~Dv 61 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGE--GAKVAFSDINE------AAGQQLAA--------------ELGERSMFVRHDV 61 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEECSCH------HHHHHHHH--------------HHCTTEEEECCCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH--------------HhCCCeEEEEeec
Confidence 68999999999999999999999999 78889988853 33433321 1235788899999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc--CCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~--~~lk~fV~ 202 (762)
++++ +.+.++ ..+|++||+|+.... .+.++..+++|+.|+..+.+.+... ++-.++|+
T Consensus 62 ~~~~------~~~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~ 135 (253)
T d1hxha_ 62 SSEA------DWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIIN 135 (253)
T ss_dssp TCHH------HHHHHHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceec
Confidence 9865 444443 368999999997542 2457789999999999988887542 22368999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cC--CC
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AG--MP 276 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~g--lp 276 (762)
+||..+..... . ...|+.||+..+.+.+..+. .| ++
T Consensus 136 isS~~~~~~~~----------~----------------------------~~~Y~asKaal~~lt~~lA~e~~~~g~~Ir 177 (253)
T d1hxha_ 136 MASVSSWLPIE----------Q----------------------------YAGYSASKAAVSALTRAAALSCRKQGYAIR 177 (253)
T ss_dssp ECCGGGTSCCT----------T----------------------------BHHHHHHHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred ccchhhhcCcc----------c----------------------------cccccchhHHHHHHHHHHHHHHhhcCCCEE
Confidence 99987643211 0 14799999988888776553 24 88
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+..+-||.|-.+.... +. +............ .....-.+...+|+|++++.++..... --.++++
T Consensus 178 VN~I~PG~i~T~~~~~---~~-----~~~~~~~~~~~~~-----~~~~~gr~~~pedvA~~v~fL~S~~s~--~itG~~i 242 (253)
T d1hxha_ 178 VNSIHPDGIYTPMMQA---SL-----PKGVSKEMVLHDP-----KLNRAGRAYMPERIAQLVLFLASDESS--VMSGSEL 242 (253)
T ss_dssp EEEEEESEECCHHHHH---HS-----CTTCCHHHHBCBT-----TTBTTCCEECHHHHHHHHHHHHSGGGT--TCCSCEE
T ss_pred EEEEeECCCcCHhHHh---hC-----cchhhHHHHHhCc-----cccccCCCCCHHHHHHHHHHHhChhhC--CCcCcEE
Confidence 9999999875431100 00 0000000000000 001112356679999999988765432 1257888
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.+|
T Consensus 243 ~VDGG 247 (253)
T d1hxha_ 243 HADNS 247 (253)
T ss_dssp EESSS
T ss_pred EECcc
Confidence 88776
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.47 E-value=1.2e-12 Score=133.29 Aligned_cols=216 Identities=16% Similarity=0.115 Sum_probs=148.8
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||++||||||+.||+.++++|++. |.+|++..|+. +++++.. .+...++.++++|+
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~--G~~V~~~~r~~------~~~~~~~--------------~~~~~~~~~~~~Dl 60 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFARE--GASLVAVDREE------RLLAEAV--------------AALEAEAIAVVADV 60 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHH--------------HTCCSSEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHH--------------HHcCCceEEEEecC
Confidence 68999999999999999999999999 78999999864 3343332 22346889999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYV 203 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~v 203 (762)
++++ ++++++ .++|++||+|+.... .+.++..+++|+.++..+.+++... .+-+.++.+
T Consensus 61 s~~~------~i~~~~~~i~~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ 134 (241)
T d2a4ka1 61 SDPK------AVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLT 134 (241)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeec
Confidence 9876 554443 368999999987532 2456778999999999999887653 233455555
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~I 279 (762)
||...... |. ...|+.+|+..|.+.+..+.. |+++..
T Consensus 135 ss~a~~~~--------------~~-------------------------~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~ 175 (241)
T d2a4ka1 135 GSVAGLGA--------------FG-------------------------LAHYAAGKLGVVGLARTLALELARKGVRVNV 175 (241)
T ss_dssp CCCTTCCH--------------HH-------------------------HHHHHHCSSHHHHHHHHHHHHHTTTTCEEEE
T ss_pred cccccccc--------------cC-------------------------ccccchhhHHHHHHHHHHHHHHhHhCCEEee
Confidence 55432210 00 047999999999999888763 799999
Q ss_pred EeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEec
Q psy7542 280 LRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLT 359 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~ 359 (762)
+.||.|-.+... + -+........... ..--+.-.+|+|+++..++.+.... -.++++.+.
T Consensus 176 I~PG~v~T~~~~-------~--~~~~~~~~~~~~~---------p~~r~~~p~dva~~v~fL~S~~s~~--itG~~i~vD 235 (241)
T d2a4ka1 176 LLPGLIQTPMTA-------G--LPPWAWEQEVGAS---------PLGRAGRPEEVAQAALFLLSEESAY--ITGQALYVD 235 (241)
T ss_dssp EEECSBCCGGGT-------T--SCHHHHHHHHHTS---------TTCSCBCHHHHHHHHHHHHSGGGTT--CCSCEEEES
T ss_pred eccCcCCCHHHH-------h--hhHhHHHHHHhCC---------CCCCCcCHHHHHHHHHHHhcchhCC--CcCceEEeC
Confidence 999987443211 1 1222222222211 1123567899999999988654321 146788887
Q ss_pred CC
Q psy7542 360 AN 361 (762)
Q Consensus 360 s~ 361 (762)
+|
T Consensus 236 GG 237 (241)
T d2a4ka1 236 GG 237 (241)
T ss_dssp TT
T ss_pred CC
Confidence 76
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=4.1e-13 Score=140.95 Aligned_cols=228 Identities=14% Similarity=0.114 Sum_probs=150.2
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.++||++|||||++.||+++++.|++. |.+|++..|.. +++++..+ .+..+. ......++..+.+|
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~--Ga~Vvi~~r~~------~~l~~~~~-----el~~~~-~~~~~~~~~~~~~D 74 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLEL--GSNVVIASRKL------ERLKSAAD-----ELQANL-PPTKQARVIPIQCN 74 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHHHTS-CTTCCCCEEEEECC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HHHhhh-ccccCceEEEEecc
Confidence 469999999999999999999999999 78899999964 23322211 111111 01234689999999
Q ss_pred cCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 138 VAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
+++++ ++++++ ..+|++||+|+.... .+.++..+++|+.|+..+.+++... .+-.++
T Consensus 75 vs~~~------~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~I 148 (297)
T d1yxma1 75 IRNEE------EVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSI 148 (297)
T ss_dssp TTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEE
T ss_pred CCCHH------HHHHHHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccccccc
Confidence 99876 555443 368999999986542 2567789999999999999887532 133567
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|.+|++..... | ....|+.||+..+.+.+..+.. |++
T Consensus 149 i~~ss~~~~~~-----------~----------------------------~~~~Y~asKaal~~ltk~lA~el~~~gIr 189 (297)
T d1yxma1 149 VNIIVPTKAGF-----------P----------------------------LAVHSGAARAGVYNLTKSLALEWACSGIR 189 (297)
T ss_dssp EEECCCCTTCC-----------T----------------------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEE
T ss_pred ccccccccccc-----------c----------------------------ccccchhHHHHHHHHHHHHHHHhcccCce
Confidence 77776532211 1 1157999999999888877752 899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCC-chHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNING-PTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRV 355 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~g-p~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~i 355 (762)
+..|.||.|..+... +.... +.......... + ...-+...+|+|++++.++..... --.+++
T Consensus 190 VN~I~PG~i~T~~~~------~~~~~~~~~~~~~~~~~----~-----plgR~g~pedvA~~v~fL~Sd~s~--~iTG~~ 252 (297)
T d1yxma1 190 INCVAPGVIYSQTAV------ENYGSWGQSFFEGSFQK----I-----PAKRIGVPEEVSSVVCFLLSPAAS--FITGQS 252 (297)
T ss_dssp EEEEEECSBCCTGGG------TTSGGGGGGGGTTGGGG----S-----TTSSCBCTHHHHHHHHHHHSGGGT--TCCSCE
T ss_pred EEEeeeCcCcCcchh------hhccccCHHHHHHHHhc----C-----CCCCCcCHHHHHHHHHHHhCchhc--CcCCcE
Confidence 999999988654311 11100 00111111110 0 011245578999999998865433 125789
Q ss_pred EEecCC
Q psy7542 356 INLTAN 361 (762)
Q Consensus 356 yNi~s~ 361 (762)
+.+.+|
T Consensus 253 i~VDGG 258 (297)
T d1yxma1 253 VDVDGG 258 (297)
T ss_dssp EEESTT
T ss_pred EEeCcC
Confidence 999887
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.46 E-value=4.6e-13 Score=138.04 Aligned_cols=232 Identities=14% Similarity=0.066 Sum_probs=143.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||++|||||++.||+.++++|++. |.+|++..|.. ++++++.+ .++.. .....++..+.+|+
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~--Ga~V~~~~r~~------~~l~~~~~-----~l~~~---~~~~~~~~~~~~Dv 66 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFARE--GAKVTITGRHA------ERLEETRQ-----QILAA---GVSEQNVNSVVADV 66 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHHHT---TCCGGGEEEEECCT
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HHHhc---CCCcCceEEEEccC
Confidence 58999999999999999999999999 78899999864 33333211 11111 11235799999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccC-------c----cccHHHHHHHhHHHHHHHHHHHHHc--CCcc
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVR-------F----DDYMQTYVFLNTRGTRDMLNLSKQM--IHLQ 198 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~-------f----~~~l~~~~~~NV~GT~~LLelA~~~--~~lk 198 (762)
++++ ++++++ ..+|++||+|+... + .+.++..+++|+.|+..+.+.+... ++-.
T Consensus 67 t~~~------~v~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g 140 (264)
T d1spxa_ 67 TTDA------GQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKG 140 (264)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccC
Confidence 9876 555544 36899999998642 1 1357778999999999988887642 1224
Q ss_pred EEEEEeCCcc-cCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----c
Q psy7542 199 LFVYVSTAYC-HPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----A 273 (762)
Q Consensus 199 ~fV~vSSay~-~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~ 273 (762)
.+|.++|..+ .... |. ...|+.||+..+.+.+..+. .
T Consensus 141 ~iI~~~S~~~~~~~~----------~~----------------------------~~~Y~asKaal~~lt~~lA~el~~~ 182 (264)
T d1spxa_ 141 EIVNISSIASGLHAT----------PD----------------------------FPYYSIAKAAIDQYTRNTAIDLIQH 182 (264)
T ss_dssp EEEEECCTTSSSSCC----------TT----------------------------SHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred cceeeeeeccccccC----------CC----------------------------chhhhhhhhhHHHHHHHHHHHhccc
Confidence 6666666533 2111 11 14699999998888877665 3
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc-cCCCCCC
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF-LSNPGNT 352 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~-~~~~~~~ 352 (762)
|+++..|.||.|-.+........-+................ ...-+...+|+|++++.++..+ .. --.
T Consensus 183 gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~---------Pl~R~g~pedvA~~v~fL~S~~~s~--~it 251 (264)
T d1spxa_ 183 GIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECV---------PAGVMGQPQDIAEVIAFLADRKTSS--YII 251 (264)
T ss_dssp TCEEEEEEECCBCCCC--------------HHHHHHHHHHC---------TTSSCBCHHHHHHHHHHHHCHHHHT--TCC
T ss_pred CeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCCcccC--Ccc
Confidence 89999999998854432211000000000001111111100 0112556799999999887533 21 014
Q ss_pred ceEEEecCC
Q psy7542 353 MRVINLTAN 361 (762)
Q Consensus 353 ~~iyNi~s~ 361 (762)
++++.+.+|
T Consensus 252 G~~i~vDGG 260 (264)
T d1spxa_ 252 GHQLVVDGG 260 (264)
T ss_dssp SCEEEESTT
T ss_pred CceEEeCCC
Confidence 788888776
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.45 E-value=1.7e-12 Score=131.27 Aligned_cols=213 Identities=9% Similarity=-0.018 Sum_probs=145.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||++.||+.++++|++. |.+|++..|.. +.+++ ...+++.+|+
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~--Ga~V~~~~r~~------~~l~~--------------------~~~~~~~~Dv 53 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQE--GAEVTICARNE------ELLKR--------------------SGHRYVVCDL 53 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHH--------------------TCSEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCH------HHHHh--------------------cCCcEEEcch
Confidence 48999999999999999999999999 78899999852 23322 2335678899
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEEeCCcc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVSTAYC 208 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vSSay~ 208 (762)
++. .+.+.+-+.++|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-.++|++||..+
T Consensus 54 ~~~-----~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~ 128 (234)
T d1o5ia_ 54 RKD-----LDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSV 128 (234)
T ss_dssp TTC-----HHHHHHHSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred HHH-----HHHHHHHhCCCcEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccc
Confidence 863 24455556789999999996532 2457778999999998888777432 23468999999754
Q ss_pred cCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEEeeee
Q psy7542 209 HPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMILRPSI 284 (762)
Q Consensus 209 ~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~IvRPs~ 284 (762)
..... ....|+.||+..+.+.+..+. .|+++..+.||.
T Consensus 129 ~~~~~--------------------------------------~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~ 170 (234)
T d1o5ia_ 129 ISPIE--------------------------------------NLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGW 170 (234)
T ss_dssp TSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECS
T ss_pred ccccc--------------------------------------ccccchhHHHHHHHHHHHHHHHhcccCeEEeecccCc
Confidence 33211 114799999988887777665 389999999997
Q ss_pred eccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 285 IIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 285 V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
|-.+... .... .......... ....-+...+|+|++++.++..... --.++++.+.+|
T Consensus 171 v~T~~~~-------~~~~-~~~~~~~~~~---------~pl~R~~~pediA~~v~fL~S~~s~--~itG~~i~vDGG 228 (234)
T d1o5ia_ 171 TETERVK-------ELLS-EEKKKQVESQ---------IPMRRMAKPEEIASVVAFLCSEKAS--YLTGQTIVVDGG 228 (234)
T ss_dssp BCCTTHH-------HHSC-HHHHHHHHTT---------STTSSCBCHHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred cchhhhh-------hhcC-HHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhChhhc--CCcCcEEEECcc
Confidence 7443211 0011 1111111111 1122366789999999888764432 125788988776
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2.7e-13 Score=138.45 Aligned_cols=197 Identities=17% Similarity=0.124 Sum_probs=139.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+|+||||++.||++++++|++. |.+|++..|.. ++++++.+ .+ .....++..+.+|+
T Consensus 5 l~Gkv~lITGas~GIG~~ia~~la~~--G~~V~l~~r~~------~~l~~~~~-----~~------~~~~~~~~~~~~Dv 65 (244)
T d1yb1a_ 5 VTGEIVLITGAGHGIGRLTAYEFAKL--KSKLVLWDINK------HGLEETAA-----KC------KGLGAKVHTFVVDC 65 (244)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HH------HHTTCCEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HH------HhcCCcEEEEEeeC
Confidence 58999999999999999999999999 78999999963 34444322 11 12346899999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHHHc---CCccEEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV 201 (762)
++++ +++.++ ..+|++||+|+..... +.++..+++|+.|+..+.+.+... .+-.++|
T Consensus 66 s~~~------~v~~~~~~i~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv 139 (244)
T d1yb1a_ 66 SNRE------DIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIV 139 (244)
T ss_dssp TCHH------HHHHHHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCHH------HHHHHHHHHHHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEE
Confidence 9976 444433 3689999999986432 346678999999999998877542 2446899
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH-------cC
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME-------AG 274 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~-------~g 274 (762)
++||..+...... ...|+.||+.-+.+.+..+. .|
T Consensus 140 ~isS~~~~~~~~~--------------------------------------~~~Y~asKaal~~~~~~La~El~~~~~~g 181 (244)
T d1yb1a_ 140 TVASAAGHVSVPF--------------------------------------LLAYCSSKFAAVGFHKTLTDELAALQITG 181 (244)
T ss_dssp EECCCC-CCCHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred EeecchhcCCCCC--------------------------------------cHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999876432110 04799999988777776653 27
Q ss_pred CCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 275 MPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 275 lpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
+.++.+.||.|-.+.. ++ +. ......+..+++|+.++.++....
T Consensus 182 I~V~~i~PG~v~T~~~-------~~---~~------------------~~~~~~~~pe~va~~i~~~~~~~~ 225 (244)
T d1yb1a_ 182 VKTTCLCPNFVNTGFI-------KN---PS------------------TSLGPTLEPEEVVNRLMHGILTEQ 225 (244)
T ss_dssp EEEEEEEETHHHHCST-------TC---TH------------------HHHCCCCCHHHHHHHHHHHHHTTC
T ss_pred EEEEEEEcCCCCChhh-------hC---cC------------------ccccCCCCHHHHHHHHHHHHhcCC
Confidence 9999999997744321 11 00 011234567999999988776543
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.45 E-value=1.7e-12 Score=133.44 Aligned_cols=228 Identities=13% Similarity=0.064 Sum_probs=149.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+||||||++.||++++++|++. |.+|++..|.... ..+..+++. .....++..+.+|+
T Consensus 7 l~gK~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~--~~~~~~~~~--------------~~~g~~~~~~~~Dv 68 (260)
T d1h5qa_ 7 FVNKTIIVTGGNRGIGLAFTRAVAAA--GANVAVIYRSAAD--AVEVTEKVG--------------KEFGVKTKAYQCDV 68 (260)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHT--TEEEEEEESSCTT--HHHHHHHHH--------------HHHTCCEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHH--HHHHHHHHH--------------HHhCCceEEEEccC
Confidence 58999999999999999999999999 7899999997643 222222221 11246789999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH----cCCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ----MIHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~----~~~lk~f 200 (762)
++++ ++++++ ..+|++||+|+.... .+.++..+++|+.|+..+.+.+.. ...-..+
T Consensus 69 ~~~~------~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i 142 (260)
T d1h5qa_ 69 SNTD------IVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSI 142 (260)
T ss_dssp TCHH------HHHHHHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEE
Confidence 9876 555444 368999999986532 245778999999999988877643 2244566
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
+.+||.......... .... .....|+.||+..+.+.+..+. .|++
T Consensus 143 ~~~~s~~~~~~~~~~---~~~~----------------------------~~~~~Y~asKaal~~lt~~lA~el~~~gIr 191 (260)
T d1h5qa_ 143 VVTSSMSSQIINQSS---LNGS----------------------------LTQVFYNSSKAACSNLVKGLAAEWASAGIR 191 (260)
T ss_dssp EEECCGGGTSCCEEE---TTEE----------------------------CSCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred EEeeccccccccccc---cccC----------------------------ccccchhhhhhhHHHHHHHHHHHhchhCeE
Confidence 666666443221100 0000 0114799999999888877765 3899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+..+.||.|-.+... . .+........... ...-+.-.+|+|++++.++.+.... -.++++
T Consensus 192 vN~I~PG~i~T~~~~-------~--~~~~~~~~~~~~~---------pl~R~g~pedvA~~v~fL~S~~s~~--itG~~i 251 (260)
T d1h5qa_ 192 VNALSPGYVNTDQTA-------H--MDKKIRDHQASNI---------PLNRFAQPEEMTGQAILLLSDHATY--MTGGEY 251 (260)
T ss_dssp EEEEEECSBCCGGGG-------G--SCHHHHHHHHHTC---------TTSSCBCGGGGHHHHHHHHSGGGTT--CCSCEE
T ss_pred EeecCCCcccCcchh-------c--cCHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhcchhCC--CcCceE
Confidence 999999987543211 1 1122222222211 0112455788999988887544321 157888
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+.+|
T Consensus 252 ~VDGG 256 (260)
T d1h5qa_ 252 FIDGG 256 (260)
T ss_dssp EECTT
T ss_pred EECCC
Confidence 88876
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.44 E-value=9.5e-13 Score=134.73 Aligned_cols=221 Identities=12% Similarity=0.078 Sum_probs=145.4
Q ss_pred cCCCEEEEECCCC--hhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGASG--FVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGATG--FLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
++||++|||||+| .||+.++++|++. |.+|++..|..+. .+..++. .....+...+.+
T Consensus 6 L~gK~alITGas~~~GIG~aiA~~la~~--Ga~V~i~~~~~~~---~~~~~~~---------------~~~~~~~~~~~~ 65 (256)
T d1ulua_ 6 LSGKKALVMGVTNQRSLGFAIAAKLKEA--GAEVALSYQAERL---RPEAEKL---------------AEALGGALLFRA 65 (256)
T ss_dssp CTTCEEEEESCCCSSSHHHHHHHHHHHT--TCEEEEEESSGGG---HHHHHHH---------------HHHTTCCEEEEC
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHC--CCEEEEEeCcHHH---HHHHHHh---------------hhccCccccccc
Confidence 5899999999998 7999999999999 7788877776322 2222221 111246778999
Q ss_pred ecCCCCCCCCHHHHHhhc-------CCccEEEEcccccC-------c----cccHHHHHHHhHHHHHHHHHHHHHc-CCc
Q psy7542 137 DVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVR-------F----DDYMQTYVFLNTRGTRDMLNLSKQM-IHL 197 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~-------f----~~~l~~~~~~NV~GT~~LLelA~~~-~~l 197 (762)
|+++++ ++++++ ..+|++||+|+... + .+.+...+++|+.++..+.+.+... .+-
T Consensus 66 D~~~~~------~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~ 139 (256)
T d1ulua_ 66 DVTQDE------ELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREG 139 (256)
T ss_dssp CTTCHH------HHHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE
T ss_pred ccCCHH------HHHHHHHHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccC
Confidence 999875 555543 36899999998642 1 1235568999999999999887642 222
Q ss_pred cEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----
Q psy7542 198 QLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA---- 273 (762)
Q Consensus 198 k~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~---- 273 (762)
.++|++||..+..... ....|+.||+..+.+.+..+..
T Consensus 140 G~Iv~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~ltr~lA~ela~~ 181 (256)
T d1ulua_ 140 GGIVTLTYYASEKVVP--------------------------------------KYNVMAIAKAALEASVRYLAYELGPK 181 (256)
T ss_dssp EEEEEEECGGGTSBCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CEEEEEeehHhcCCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHhccc
Confidence 5799999986643211 0157999999999988877763
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCc
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTM 353 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~ 353 (762)
|+++..+.||.|..+..... .............. ...-+...+|+|++++.++...... -.+
T Consensus 182 gIrVN~I~PG~i~t~~~~~~-------~~~~~~~~~~~~~~---------pl~R~~~pedvA~~v~fL~S~~s~~--itG 243 (256)
T d1ulua_ 182 GVRVNAISAGPVRTVAARSI-------PGFTKMYDRVAQTA---------PLRRNITQEEVGNLGLFLLSPLASG--ITG 243 (256)
T ss_dssp TCEEEEEEECCC-----------------CHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHHSGGGTT--CCS
T ss_pred CCEEeeeccceeeeccccch-------hhhHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCchhCC--ccC
Confidence 89999999998765432211 11122222222111 0122556799999998888654431 247
Q ss_pred eEEEecCC
Q psy7542 354 RVINLTAN 361 (762)
Q Consensus 354 ~iyNi~s~ 361 (762)
+++.+.+|
T Consensus 244 ~~i~VDGG 251 (256)
T d1ulua_ 244 EVVYVDAG 251 (256)
T ss_dssp CEEEESTT
T ss_pred CeEEECcC
Confidence 88888776
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.44 E-value=5e-13 Score=137.46 Aligned_cols=230 Identities=14% Similarity=0.060 Sum_probs=150.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||++|||||++.||+.++++|++. |.+|++..|.. +++++..+ .+.. .....++..+.+|+
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~------~~l~~~~~-----~~~~----~~~~~~~~~~~~Dv 64 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAE--GAKLSLVDVSS------EGLEASKA-----AVLE----TAPDAEVLTTVADV 64 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHHH----HCTTCCEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HHHh----hCCCCeEEEEeccC
Confidence 58999999999999999999999999 78899999864 23322211 0111 11235788999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccC----c----cccHHHHHHHhHHHHHHHHHHHHHc---CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVR----F----DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~----f----~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~f 200 (762)
++++ ++++++ ..+|++||+||... + .+.++..+++|+.|+..+.+++... ++-.++
T Consensus 65 t~~~------~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~I 138 (258)
T d1iy8a_ 65 SDEA------QVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMV 138 (258)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCC
Confidence 9876 555443 46899999999642 2 1457779999999999999877432 244689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... ....|+.||+..+.+.+..+. .|++
T Consensus 139 i~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~el~~~gIr 180 (258)
T d1iy8a_ 139 VNTASVGGIRGIG--------------------------------------NQSGYAAAKHGVVGLTRNSAVEYGRYGIR 180 (258)
T ss_dssp EEECCGGGTSBCS--------------------------------------SBHHHHHHHHHHHHHHHHHHHHHGGGTCE
T ss_pred cccccHhhccCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHhCccCce
Confidence 9999986643211 015799999988888877765 3899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+..+.||.|..+..+...... ....+........... ...-+...+|+|++++.++..... --.++++
T Consensus 181 VN~i~PG~v~T~~~~~~~~~~-~~~~~~~~~~~~~~~~---------pl~R~~~p~dvA~~v~fL~S~~s~--~itG~~i 248 (258)
T d1iy8a_ 181 INAIAPGAIWTPMVENSMKQL-DPENPRKAAEEFIQVN---------PSKRYGEAPEIAAVVAFLLSDDAS--YVNATVV 248 (258)
T ss_dssp EEEEEECSBCSHHHHHHHHHH-CTTCHHHHHHHHHTTC---------TTCSCBCHHHHHHHHHHHTSGGGT--TCCSCEE
T ss_pred EEEEeeCcccCHHHHHHHhhc-CcccHHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCchhc--CCcCceE
Confidence 999999977443110000000 0000111111111111 112256689999999988865432 1257888
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
.+.+|
T Consensus 249 ~VDGG 253 (258)
T d1iy8a_ 249 PIDGG 253 (258)
T ss_dssp EESTT
T ss_pred EcCcc
Confidence 88877
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.43 E-value=1e-12 Score=134.72 Aligned_cols=226 Identities=12% Similarity=0.047 Sum_probs=146.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|.+|||||++.||+.++++|++. |.+|++..|.. ++++++.+ .+ .....++..+.+|++++
T Consensus 2 KValITGas~GIG~aia~~la~~--Ga~V~~~~r~~------~~l~~~~~-----~i------~~~g~~~~~~~~Dv~~~ 62 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKD--GFAVAIADYND------ATAKAVAS-----EI------NQAGGHAVAVKVDVSDR 62 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HH------HHTTCCEEEEECCTTSH
T ss_pred CEEEEcCCccHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HH------HhcCCcEEEEEeeCCCH
Confidence 56799999999999999999999 78899999863 33333221 11 12235789999999987
Q ss_pred CCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH----cCCccEEEEE
Q psy7542 142 DLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ----MIHLQLFVYV 203 (762)
Q Consensus 142 ~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~----~~~lk~fV~v 203 (762)
+ ++++++ ..+|++||+||.... .+.++..+++|+.|+..+.+.+.. .+.-.++|++
T Consensus 63 ~------~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~i 136 (255)
T d1gega_ 63 D------QVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINA 136 (255)
T ss_dssp H------HHHHHHHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred H------HHHHHHHHHHHHhCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccc
Confidence 6 454443 468999999997542 245778999999999999887643 2234679999
Q ss_pred eCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEE
Q psy7542 204 STAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMI 279 (762)
Q Consensus 204 SSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~I 279 (762)
||..+..... ....|+.||+..+.+.+..+. .|+++..
T Consensus 137 sS~~~~~~~~--------------------------------------~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~ 178 (255)
T d1gega_ 137 CSQAGHVGNP--------------------------------------ELAVYSSSKFAVRGLTQTAARDLAPLGITVNG 178 (255)
T ss_dssp CCGGGTSCCT--------------------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred cchhhcccCc--------------------------------------ccccchhCHHHHHhhHHHHHHHhhhhCcEEEE
Confidence 9986543211 015799999988888877765 3899999
Q ss_pred EeeeeeccCCCCCCCCC-CCCCCCc-hHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEE
Q psy7542 280 LRPSIIIPIWKDPLPGW-TDNINGP-TGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVIN 357 (762)
Q Consensus 280 vRPs~V~G~~~eP~pGW-idn~~gp-~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyN 357 (762)
+.||.|-.+.-...... .+....+ ......+... ....-+...+|+|++++.++..... -..++++.
T Consensus 179 I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~pl~R~~~peevA~~v~fL~S~~a~--~itG~~i~ 247 (255)
T d1gega_ 179 YCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKR---------ITLGRLSEPEDVAACVSYLASPDSD--YMTGQSLL 247 (255)
T ss_dssp EEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTT---------CTTCSCBCHHHHHHHHHHHHSGGGT--TCCSCEEE
T ss_pred EecCcccChHHhhhhhhhHhhhcccchhHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCchhC--CccCcEEE
Confidence 99997633210000000 0000000 0011111110 1112356789999999988865433 12578888
Q ss_pred ecCC
Q psy7542 358 LTAN 361 (762)
Q Consensus 358 i~s~ 361 (762)
+.+|
T Consensus 248 vDGG 251 (255)
T d1gega_ 248 IDGG 251 (255)
T ss_dssp ESSS
T ss_pred ecCC
Confidence 8776
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=8.8e-13 Score=135.48 Aligned_cols=212 Identities=15% Similarity=0.126 Sum_probs=140.6
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.++||+||||||++.||++++++|++. |.+|++..|.. ++++++.+ .++. .....++.++.+|
T Consensus 7 ~lk~Kv~lITGas~GIG~aiA~~la~~--G~~Vv~~~r~~------~~l~~~~~-----~l~~----~~~~~~~~~~~~D 69 (257)
T d1xg5a_ 7 RWRDRLALVTGASGGIGAAVARALVQQ--GLKVVGCARTV------GNIEELAA-----ECKS----AGYPGTLIPYRCD 69 (257)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHHH----TTCSSEEEEEECC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HHHh----cCCCceEEEEEcc
Confidence 379999999999999999999999999 78889998853 34443321 1111 1123578999999
Q ss_pred cCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH----cC-Ccc
Q psy7542 138 VAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ----MI-HLQ 198 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~----~~-~lk 198 (762)
+++++ ++++++ ..+|++||+|+.... .+.++..+++|+.|+..+.+.+.. .+ +-.
T Consensus 70 ls~~~------~v~~~v~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g 143 (257)
T d1xg5a_ 70 LSNEE------DILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDG 143 (257)
T ss_dssp TTCHH------HHHHHHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSC
T ss_pred CCCHH------HHHHHHHHHHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCC
Confidence 99865 555443 368999999997642 356778999999999888777643 21 236
Q ss_pred EEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH------
Q psy7542 199 LFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME------ 272 (762)
Q Consensus 199 ~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~------ 272 (762)
++|++||..+..... .+. ...|+.+|+..+.+.+..+.
T Consensus 144 ~Ii~isS~~~~~~~p--------~~~----------------------------~~~Y~~sKaal~~ltr~la~el~~~~ 187 (257)
T d1xg5a_ 144 HIININSMSGHRVLP--------LSV----------------------------THFYSATKYAVTALTEGLRQELREAQ 187 (257)
T ss_dssp EEEEECCGGGTSCCS--------CGG----------------------------GHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceEEEechHhcCCCC--------Ccc----------------------------cHHHHHHHHHHHhCHHHHHHHHHhCC
Confidence 899999987642211 000 03699999999998876653
Q ss_pred cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 273 AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 273 ~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
.++.+..+-||.+-.+.....+ + ..+....... ....+.-.+|+|++++.++..+.
T Consensus 188 ~~I~vn~i~PG~i~t~~~~~~~---~--~~~~~~~~~~-------------~~~r~~~pedvA~~v~fL~s~~a 243 (257)
T d1xg5a_ 188 THIRATCISPGVVETQFAFKLH---D--KDPEKAAATY-------------EQMKCLKPEDVAEAVIYVLSTPA 243 (257)
T ss_dssp CCCEEEEEEESCBCSSHHHHHT---T--TCHHHHHHHH-------------C---CBCHHHHHHHHHHHHHSCT
T ss_pred CCEEEEEEeCCCCCChhhhhcC---h--hhHHHHHhcC-------------CCCCCcCHHHHHHHHHHHhCChh
Confidence 2899999999876433211000 0 0001111111 11235678999999998887654
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.42 E-value=5.2e-13 Score=137.40 Aligned_cols=167 Identities=15% Similarity=0.114 Sum_probs=124.0
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+++||||++.||+.+++.|++. |.+|++..|.+ ++++++.+ .+ .....++..+.+|+
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~------~~l~~~~~-----~~------~~~g~~~~~~~~Dv 63 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEE--GTAIALLDMNR------EALEKAEA-----SV------REKGVEARSYVCDV 63 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HH------HTTTSCEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HH------HhcCCcEEEEEccC
Confidence 58999999999999999999999999 78899999853 33333211 11 12245789999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccC----c----cccHHHHHHHhHHHHHHHHHHHHH-c--CCccEE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVR----F----DDYMQTYVFLNTRGTRDMLNLSKQ-M--IHLQLF 200 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~----f----~~~l~~~~~~NV~GT~~LLelA~~-~--~~lk~f 200 (762)
++++ ++++++ ..+|++||+||... + .+.++..+++|+.|+..+.+.+.. + .+-.++
T Consensus 64 ~~~~------~v~~~~~~~~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~I 137 (260)
T d1zema1 64 TSEE------AVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRI 137 (260)
T ss_dssp TCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEE
T ss_pred CCHH------HHHHHHHHHHHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCC
Confidence 9875 454443 36899999999653 2 145677899999999999888753 2 244689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... . ...|+.||+..+.+.+..+. .|+.
T Consensus 138 I~isS~~~~~~~~----------~----------------------------~~~Y~asKaal~~ltk~lA~el~~~gIr 179 (260)
T d1zema1 138 VNTASMAGVKGPP----------N----------------------------MAAYGTSKGAIIALTETAALDLAPYNIR 179 (260)
T ss_dssp EEECCHHHHSCCT----------T----------------------------BHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred CeeechhhccCCc----------c----------------------------hHHHHHHHHHHHHHHHHHHHHhhhhCCE
Confidence 9999986543211 0 14799999998888877766 3899
Q ss_pred EEEEeeeeeccC
Q psy7542 277 CMILRPSIIIPI 288 (762)
Q Consensus 277 v~IvRPs~V~G~ 288 (762)
+..+.||.|-.+
T Consensus 180 VN~I~PG~v~T~ 191 (260)
T d1zema1 180 VNAISPGYMGPG 191 (260)
T ss_dssp EEEEEECSBCSS
T ss_pred EEEeccCcccCc
Confidence 999999987543
|
| >d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: p40phox NADPH oxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.4e-13 Score=129.20 Aligned_cols=114 Identities=15% Similarity=0.219 Sum_probs=87.1
Q ss_pred CCccccccceeeecCCCCeEEEEEEEEEc-CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHh
Q psy7542 518 KENCISVSGYRLIECEKPYYVYVIHVRMF-QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKK 596 (762)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (762)
..+.+.|.+.+.....+.|+||+|+|... +..|.|.||||||..||+ +++
T Consensus 19 ~~v~~~i~~~e~~~~~~~y~vY~I~v~~~~~~~~~V~RRYsdF~~L~~-----------------------------~L~ 69 (143)
T d1h6ha_ 19 VAISANIADIEEKRGFTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQS-----------------------------KLE 69 (143)
T ss_dssp CEEEEEEEEEEEECSSSCEEEEEEEEEETTSCEEEEEEEHHHHHHHHH-----------------------------HHH
T ss_pred ceEEEEEeceeEecCCCCeEEEEEEEEEcCCCEEEEEEeHHHHHHHHH-----------------------------HHH
Confidence 34556677776666668899999999875 578999999999999999 555
Q ss_pred hhchhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHHHhc
Q psy7542 597 RNCKYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIRSNQPKVLDERRHLLEIYLKEMFKF 676 (762)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (762)
+.+... +. ........|.+|+|.+.+++++++++||..||.||+.+++.
T Consensus 70 ~~~~~~------------------------------~~-~~~~~~~lP~lP~k~~~~~~~~~ie~Rr~~Le~yL~~Ll~~ 118 (143)
T d1h6ha_ 70 ERFGPD------------------------------SK-SSALACTLPTLPAKVYVGVKQEIAEMRIPALNAYMKSLLSL 118 (143)
T ss_dssp HHHSTT------------------------------CS-CGGGCCCCCCCCCCCCSSCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHCchh------------------------------hc-cccccccccCCCccccCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 554220 00 00112357889999999999999999999999999999987
Q ss_pred CCCh---HHHHhhhCCCC
Q psy7542 677 GPSR---NQVLAFLGVNS 691 (762)
Q Consensus 677 ~~~~---~~~~~~~~~~~ 691 (762)
.+.. ..|..||....
T Consensus 119 ~~~i~~s~~v~~Fl~~~~ 136 (143)
T d1h6ha_ 119 PVWVLMDEDVRIFFYQSP 136 (143)
T ss_dssp CHHHHTCHHHHHHHSCCH
T ss_pred ChhhccCHHHHHHhCCCC
Confidence 6533 78999998763
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.42 E-value=2.2e-12 Score=131.08 Aligned_cols=197 Identities=16% Similarity=0.126 Sum_probs=136.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc-----EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV-----KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v-----~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
+.||||||++.||++++++|++.|..+ .|++..|.. ++++++.+ .+ .....++..+.+
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~------~~l~~~~~-----~~------~~~g~~~~~~~~ 64 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA------ADLEKISL-----EC------RAEGALTDTITA 64 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH------HHHHHHHH-----HH------HTTTCEEEEEEC
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCH------HHHHHHHH-----HH------HhcCCcEEEEEe
Confidence 358999999999999999999995431 377777753 33333211 11 122357889999
Q ss_pred ecCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccE
Q psy7542 137 DVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQL 199 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~ 199 (762)
|+++++ ++++++ ..+|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-.+
T Consensus 65 Dvt~~~------~v~~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~ 138 (240)
T d2bd0a1 65 DISDMA------DVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGH 138 (240)
T ss_dssp CTTSHH------HHHHHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEE
T ss_pred cCCCHH------HHHHHHHHHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCc
Confidence 999876 454443 368999999997642 2567789999999999988887542 23468
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 275 (762)
+|++||..+..... . ...|+.||+..+.+.+..+. .|+
T Consensus 139 Ii~isS~~~~~~~~----------~----------------------------~~~Y~asK~al~~lt~~la~el~~~gI 180 (240)
T d2bd0a1 139 IFFITSVAATKAFR----------H----------------------------SSIYCMSKFGQRGLVETMRLYARKCNV 180 (240)
T ss_dssp EEEECCGGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHTTTTE
T ss_pred eEEEechhhcCCCC----------C----------------------------ChHHHHHHHHHHHHHHHHHHHhCcCCe
Confidence 99999986643211 0 15799999988888777655 389
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
.+..+.||.|-.+.-+.. +.+....+...+|+|++++.++..+.
T Consensus 181 rvn~i~PG~v~T~~~~~~---------------------------~~~~~~~~~~PedvA~~v~~l~s~~~ 224 (240)
T d2bd0a1 181 RITDVQPGAVYTPMWGKV---------------------------DDEMQALMMMPEDIAAPVVQAYLQPS 224 (240)
T ss_dssp EEEEEEECCBCSTTTCCC---------------------------CSTTGGGSBCHHHHHHHHHHHHTSCT
T ss_pred EEEEeeeCcccCchhhhc---------------------------CHhhHhcCCCHHHHHHHHHHHHcCCc
Confidence 999999998754421110 01111234557999999999887654
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.41 E-value=9.8e-13 Score=134.97 Aligned_cols=228 Identities=11% Similarity=0.085 Sum_probs=150.5
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.||++|||||++.||+.++++|++. |.+|++..|.. +++++..+ .+ .....++..+.+|++
T Consensus 1 DgKValITGas~GIG~aia~~la~~--Ga~V~i~~r~~------~~l~~~~~-----~l------~~~g~~~~~~~~Dvs 61 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKE--GLRVFVCARGE------EGLRTTLK-----EL------REAGVEADGRTCDVR 61 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HH------HHTTCCEEEEECCTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HH------HhcCCcEEEEEeecC
Confidence 4799999999999999999999999 78889999853 33333221 11 122357899999999
Q ss_pred CCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-----CCccEE
Q psy7542 140 VPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-----IHLQLF 200 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-----~~lk~f 200 (762)
+++ +++.++ ..+|++||+||.... .+.++..+++|+.|+..+.+.+... .+-.++
T Consensus 62 ~~~------~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~I 135 (257)
T d2rhca1 62 SVP------EIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRI 135 (257)
T ss_dssp CHH------HHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEE
T ss_pred CHH------HHHHHHHHHHHHhCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccc
Confidence 876 455443 368999999997542 2457789999999999999988642 234689
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glp 276 (762)
|.+||..+..... ....|+.||+..+.+.+..+.. |++
T Consensus 136 i~i~S~~~~~~~~--------------------------------------~~~~Y~asKaal~~ltk~lA~el~~~gIr 177 (257)
T d2rhca1 136 VNIASTGGKQGVV--------------------------------------HAAPYSASKHGVVGFTKALGLELARTGIT 177 (257)
T ss_dssp EEECCGGGTSCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHTTTSEEE
T ss_pred ccccccccccccc--------------------------------------cchhHHHHHHHHHHHHHHHHHHhhhhCcE
Confidence 9999986643221 0147999999999988887763 799
Q ss_pred EEEEeeeeeccCCCCCCC-CCCC-CCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 277 CMILRPSIIIPIWKDPLP-GWTD-NINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~p-GWid-n~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
+..+.||.|-.+..+... .+.+ ....+......+.... ..--+...+|+|++++.++..... --.++
T Consensus 178 VN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~---------PlgR~~~pedia~~v~fL~S~~s~--~itG~ 246 (257)
T d2rhca1 178 VNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARV---------PIGRYVQPSEVAEMVAYLIGPGAA--AVTAQ 246 (257)
T ss_dssp EEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTS---------TTSSCBCHHHHHHHHHHHTSGGGT--TCCSC
T ss_pred EEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCchhc--CCcCc
Confidence 999999876332100000 0000 0000111111111111 112356789999999998865433 12578
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
++.+.+|
T Consensus 247 ~i~vDGG 253 (257)
T d2rhca1 247 ALNVCGG 253 (257)
T ss_dssp EEEESTT
T ss_pred eEEECcC
Confidence 8888776
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.40 E-value=1.1e-11 Score=127.99 Aligned_cols=234 Identities=17% Similarity=0.078 Sum_probs=150.3
Q ss_pred hccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 57 ATLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 57 ~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
..++||+|||||||+.||+.++++|++. |.+|++..|... +.++++.+ .+ .....++.++.+
T Consensus 14 ~sL~gK~~lITGas~GIG~aia~~la~~--Ga~Vvi~~~~~~-----~~~~~~~~-----~~------~~~g~~~~~~~~ 75 (272)
T d1g0oa_ 14 ASLEGKVALVTGAGRGIGREMAMELGRR--GCKVIVNYANST-----ESAEEVVA-----AI------KKNGSDAACVKA 75 (272)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCH-----HHHHHHHH-----HH------HHTTCCEEEEEC
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCch-----HHHHHHHH-----HH------HhhCCceeeEeC
Confidence 3479999999999999999999999999 788888887642 22222211 11 122467899999
Q ss_pred ecCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH-cCCccEEE
Q psy7542 137 DVAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ-MIHLQLFV 201 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~-~~~lk~fV 201 (762)
|+++++ ++..++ ..+|+++|+|+.... .+.++..+++|+.|+..+.+++.. +..-.+.+
T Consensus 76 D~~~~~------~v~~~~~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i 149 (272)
T d1g0oa_ 76 NVGVVE------DIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLI 149 (272)
T ss_dssp CTTCHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEE
T ss_pred CCCCHH------HHHHHHHHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccc
Confidence 999865 454443 368999999997643 245677899999999999998875 33335788
Q ss_pred EEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCE
Q psy7542 202 YVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPC 277 (762)
Q Consensus 202 ~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv 277 (762)
.++|..+..... .....|+.||+.-+.+++..+. .|+++
T Consensus 150 ~i~s~~~~~~~~-------------------------------------~~~~~Y~asKaal~~ltk~lA~e~~~~gIrV 192 (272)
T d1g0oa_ 150 LMGSITGQAKAV-------------------------------------PKHAVYSGSKGAIETFARCMAIDMADKKITV 192 (272)
T ss_dssp EECCGGGTCSSC-------------------------------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEE
T ss_pred cccccccccccc-------------------------------------cchhhHHHHHHHHHHHHHHHHHHhchhCeEE
Confidence 888775432110 0114699999998888877665 38999
Q ss_pred EEEeeeeeccCCCCCCC-CCCCC--CCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 278 MILRPSIIIPIWKDPLP-GWTDN--INGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 278 ~IvRPs~V~G~~~eP~p-GWidn--~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
..|.||.|-.+.-.... .+... ............... ...--+...+|+|++++.++..... -..++
T Consensus 193 N~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~PlgR~~~peevA~~v~fL~s~~s~--~itG~ 262 (272)
T d1g0oa_ 193 NVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQW--------SPLRRVGLPIDIARVVCFLASNDGG--WVTGK 262 (272)
T ss_dssp EEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHS--------CTTCSCBCHHHHHHHHHHHHSGGGT--TCCSC
T ss_pred EEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHcc--------CCCCCCcCHHHHHHHHHHHhCchhc--CccCc
Confidence 99999987432100000 00000 000011111000000 1112356789999999998865442 12477
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
+..+.+|
T Consensus 263 ~i~vDGG 269 (272)
T d1g0oa_ 263 VIGIDGG 269 (272)
T ss_dssp EEEESTT
T ss_pred eEeECCC
Confidence 8888776
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.39 E-value=2.5e-12 Score=131.01 Aligned_cols=219 Identities=14% Similarity=0.088 Sum_probs=144.9
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
+.||||||++.||+.++++|++. |.+|++..+... ...+.+.+.+ .....++..+.+|++++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~--Ga~V~i~~~~~~--~~~~~~~~~~--------------~~~g~~~~~~~~Dv~~~ 63 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKA--GCKVLVNYARSA--KAAEEVSKQI--------------EAYGGQAITFGGDVSKE 63 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCH--HHHHHHHHHH--------------HHHTCEEEEEECCTTSH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCCH--HHHHHHHHHH--------------HHcCCcEEEEeCCCCCH
Confidence 36999999999999999999999 788877655432 1122222211 12236788999999987
Q ss_pred CCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEEe
Q psy7542 142 DLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVS 204 (762)
Q Consensus 142 ~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vS 204 (762)
+ ++++++ ..+|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-.++|++|
T Consensus 64 ~------~v~~~~~~~~~~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnis 137 (244)
T d1edoa_ 64 A------DVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIA 137 (244)
T ss_dssp H------HHHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred H------HHHHHHHHHHHHcCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEc
Confidence 6 554443 368999999997642 2557789999999999998887542 2446999999
Q ss_pred CCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEEE
Q psy7542 205 TAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMIL 280 (762)
Q Consensus 205 Say~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~Iv 280 (762)
|..+..... ....|+.||+..+.+.+..+.. |+++..+
T Consensus 138 S~~~~~~~~--------------------------------------~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I 179 (244)
T d1edoa_ 138 SVVGLIGNI--------------------------------------GQANYAAAKAGVIGFSKTAAREGASRNINVNVV 179 (244)
T ss_dssp CTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEE
T ss_pred ChhhcCCCC--------------------------------------CCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEE
Confidence 986532210 0157999999988888777663 8999999
Q ss_pred eeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 281 RPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 281 RPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
.||.|-.+..+ .. +.......... ....-+...+|+|+++..++..+... --.++++.+.+
T Consensus 180 ~PG~i~T~~~~-------~~--~~~~~~~~~~~---------~pl~R~~~p~dvA~~v~fLa~S~~a~-~itG~~i~vdG 240 (244)
T d1edoa_ 180 CPGFIASDMTA-------KL--GEDMEKKILGT---------IPLGRTGQPENVAGLVEFLALSPAAS-YITGQAFTIDG 240 (244)
T ss_dssp EECSBCSHHHH-------TT--CHHHHHHHHTS---------CTTCSCBCHHHHHHHHHHHHHCSGGG-GCCSCEEEEST
T ss_pred ecceeccHHHH-------Hh--hHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHHCCchhc-CCcCCeEEeCC
Confidence 99977433211 10 11122222111 11123567899999999876433210 11478888877
Q ss_pred C
Q psy7542 361 N 361 (762)
Q Consensus 361 ~ 361 (762)
|
T Consensus 241 G 241 (244)
T d1edoa_ 241 G 241 (244)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=1.6e-12 Score=136.79 Aligned_cols=216 Identities=12% Similarity=0.079 Sum_probs=141.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCc---chHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNK---NSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~---~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
++||++|||||++.||+.++++|++. |.+|++..|..... ..++.++++.+ ....+...+.
T Consensus 5 l~gKvalITGas~GIG~aiA~~la~~--Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~ 68 (302)
T d1gz6a_ 5 FDGRVVLVTGAGGGLGRAYALAFAER--GALVVVNDLGGDFKGVGKGSSAADKVVE--------------EIRRRGGKAV 68 (302)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEECCCBCTTSCBCCSHHHHHHHH--------------HHHHTTCEEE
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCchhhhhhhhHHHHHHHHH--------------HHhhcccccc
Confidence 58999999999999999999999999 78888888764321 11222322211 1112344567
Q ss_pred eecCCCCCCCCHHHHHh---hcCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEE
Q psy7542 136 GDVAVPDLGISAEDRQM---LSETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVY 202 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~---l~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~ 202 (762)
+|+.+.+- .++.++. -...+|++||+||.... .+.++..+++|+.|+..+.+.+... .+-.++|+
T Consensus 69 ~d~~~~~~--~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~ 146 (302)
T d1gz6a_ 69 ANYDSVEA--GEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIM 146 (302)
T ss_dssp EECCCGGG--HHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred cccchHHH--HHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEE
Confidence 78877651 0111222 23469999999997642 2457789999999999998887542 23469999
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~ 278 (762)
+||..+..... ....|+.||+..+.+.+..+.. |+.+.
T Consensus 147 isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~la~E~~~~gIrVN 188 (302)
T d1gz6a_ 147 TASASGIYGNF--------------------------------------GQANYSAAKLGLLGLANTLVIEGRKNNIHCN 188 (302)
T ss_dssp ECCHHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEE
T ss_pred eCChhhcCCCC--------------------------------------CcHHHHHHHHHHHHHHHHHHHHHhccCCcee
Confidence 99985532110 0157999999988888777662 89999
Q ss_pred EEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 279 ILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 279 IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
.+-||.+...... ..+.. ....+..+|+|++++.++..... ..++++.+
T Consensus 189 ~I~PG~~~t~~~~---------~~~~~-------------------~~~~~~PedvA~~v~fL~S~~a~---itG~~i~v 237 (302)
T d1gz6a_ 189 TIAPNAGSRMTET---------VMPED-------------------LVEALKPEYVAPLVLWLCHESCE---ENGGLFEV 237 (302)
T ss_dssp EEEEECCSTTTGG---------GSCHH-------------------HHHHSCGGGTHHHHHHHTSTTCC---CCSCEEEE
T ss_pred eeCCCCCCcchhh---------cCcHh-------------------hHhcCCHHHHHHHHHHHcCCCcC---CCCcEEEe
Confidence 9999966332111 00111 12233457899999888753322 25777777
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.+|
T Consensus 238 dGG 240 (302)
T d1gz6a_ 238 GAG 240 (302)
T ss_dssp ETT
T ss_pred CCC
Confidence 665
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.38 E-value=9.3e-12 Score=127.64 Aligned_cols=230 Identities=15% Similarity=0.084 Sum_probs=149.0
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.++||+||||||+|.||+++++.|++. |.+|++..|.... ..+++.+.+ .....++..+.+|
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~--G~~Vvi~~~~~~~--~~~~~~~~~--------------~~~g~~~~~~~~D 64 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRR--GASVVVNYGSSSK--AAEEVVAEL--------------KKLGAQGVAIQAD 64 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHH--HHHHHHHHH--------------HHTTCCEEEEECC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEcCCChH--HHHHHHHHH--------------HHcCCCceEecCC
Confidence 368999999999999999999999999 7778877665321 222332221 1234588999999
Q ss_pred cCCCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEE
Q psy7542 138 VAVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVY 202 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~ 202 (762)
+++++ +++.++ ..+|++||+|+.... .+.++..+++|+.+...+++.+... .+-.+.+.
T Consensus 65 ~~~~~------~v~~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~ii 138 (259)
T d1ja9a_ 65 ISKPS------EVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIIL 138 (259)
T ss_dssp TTSHH------HHHHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCHH------HHHHHHHHHHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccc
Confidence 99865 444433 368999999997642 2456778999999999999888753 23346667
Q ss_pred EeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEE
Q psy7542 203 VSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCM 278 (762)
Q Consensus 203 vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~ 278 (762)
++|..+... + .|. ...|+.||+.-+.+++..+. .|+++.
T Consensus 139 i~s~~~~~~--~-------~~~----------------------------~~~Y~asK~al~~l~r~lA~e~~~~gIrvN 181 (259)
T d1ja9a_ 139 TSSIAAVMT--G-------IPN----------------------------HALYAGSKAAVEGFCRAFAVDCGAKGVTVN 181 (259)
T ss_dssp ECCGGGTCC--S-------CCS----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEE
T ss_pred ccccccccc--C-------CCC----------------------------chhHHHHHHHHHHHHHHHHHHHhhcCeEEe
Confidence 766543211 0 011 14799999988888877766 389999
Q ss_pred EEeeeeeccCC------CCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCC
Q psy7542 279 ILRPSIIIPIW------KDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNT 352 (762)
Q Consensus 279 IvRPs~V~G~~------~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~ 352 (762)
.|.||.|-.+. ..+...+ .......+...+.... ...-+...+|||++++.++.+.... -.
T Consensus 182 ~I~PG~i~T~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------pl~R~g~p~eVa~~v~fL~S~~a~~--it 248 (259)
T d1ja9a_ 182 CIAPGGVKTDMFDENSWHYAPGGY--KGMPQEKIDEGLANMN---------PLKRIGYPADIGRAVSALCQEESEW--IN 248 (259)
T ss_dssp EEEECCBSSHHHHHHGGGTSTTCC--TTCCHHHHHHHHHHTS---------TTSSCBCHHHHHHHHHHHHSGGGTT--CC
T ss_pred ccCcCCccChhhhhhhhhhhhhhc--ccCCHHHHHHHHHhCC---------CCCCCcCHHHHHHHHHHHhCchhcC--Cc
Confidence 99999874321 0000000 0001111222222211 1223667899999999988765431 25
Q ss_pred ceEEEecCC
Q psy7542 353 MRVINLTAN 361 (762)
Q Consensus 353 ~~iyNi~s~ 361 (762)
+++..+.+|
T Consensus 249 G~~i~vDGG 257 (259)
T d1ja9a_ 249 GQVIKLTGG 257 (259)
T ss_dssp SCEEEESTT
T ss_pred CceEEeCCC
Confidence 788888776
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.37 E-value=1.3e-11 Score=128.60 Aligned_cols=224 Identities=21% Similarity=0.138 Sum_probs=145.3
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.++||++|||||||.||++++++|++. |.+|++..|... ++++..+ .+. .....++..+.+|
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~--Ga~Vii~~r~~~------~l~~~~~-----~l~-----~~~g~~~~~~~~D 83 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSL--GAQCVIASRKMD------VLKATAE-----QIS-----SQTGNKVHAIQCD 83 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHH------HHHHHHH-----HHH-----HHHSSCEEEEECC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHH------HHHHHHH-----HHH-----HhcCCceEEEEec
Confidence 479999999999999999999999999 788999999642 2222211 111 1224678899999
Q ss_pred cCCCCCCCCHHHHHhh-------cCCccEEEEcccccCcc-------ccHHHHHHHhHHHHHHHHHHHH----HcCCccE
Q psy7542 138 VAVPDLGISAEDRQML-------SETIHIVYHIAATVRFD-------DYMQTYVFLNTRGTRDMLNLSK----QMIHLQL 199 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l-------~~~vDiViH~AA~v~f~-------~~l~~~~~~NV~GT~~LLelA~----~~~~lk~ 199 (762)
+++++ +++.+ ...+|++||+|+..... +.+...+.+|+.+...+...+. ....-..
T Consensus 84 ~~~~~------~v~~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 157 (294)
T d1w6ua_ 84 VRDPD------MVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAA 157 (294)
T ss_dssp TTCHH------HHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ccChH------HHHHHhhhhhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhccccccccccc
Confidence 99876 44332 34689999999975432 2355677888888777655432 2234456
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 275 (762)
++.+||.++..... ....|+.+|+.-+.+++..+. .|+
T Consensus 158 i~~~ss~~~~~~~~--------------------------------------~~~~YsasKaal~~ltk~lA~ela~~gI 199 (294)
T d1w6ua_ 158 FLSITTIYAETGSG--------------------------------------FVVPSASAKAGVEAMSKSLAAEWGKYGM 199 (294)
T ss_dssp EEEECCTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTE
T ss_pred ccccccchhhhccc--------------------------------------ccchHHHHHHHHHHHHHHHHHHHhHhCe
Confidence 67777765422110 114699999999998887765 389
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCch-HHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCce
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPT-GLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMR 354 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~-~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~ 354 (762)
++..|.||.|-.+... ....+. .......... ...-+...+|+|+++..++.+.... -.|+
T Consensus 200 rVN~I~PG~i~T~~~~-------~~~~~~~~~~~~~~~~~---------pl~R~~~pediA~~v~fL~sd~s~~--itG~ 261 (294)
T d1w6ua_ 200 RFNVIQPGPIKTKGAF-------SRLDPTGTFEKEMIGRI---------PCGRLGTVEELANLAAFLCSDYASW--INGA 261 (294)
T ss_dssp EEEEEEECCBCC-------------CCTTSHHHHHHHTTC---------TTSSCBCHHHHHHHHHHHTSGGGTT--CCSC
T ss_pred EEEEEccCccccchhh-------hccCCcHHHHHHHhhcC---------CCCCCCCHHHHHHHHHHHhCchhcC--CCCc
Confidence 9999999988654321 111111 1222222211 1123556799999999988654321 1578
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
+..+.+|
T Consensus 262 ~i~vDGG 268 (294)
T d1w6ua_ 262 VIKFDGG 268 (294)
T ss_dssp EEEESTT
T ss_pred EEEECCC
Confidence 9999887
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=6.9e-12 Score=127.75 Aligned_cols=225 Identities=14% Similarity=0.089 Sum_probs=148.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||++|||||++.||+.++++|++. |.+|++..|.+ ++++++.+ ...+.....|+
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~--G~~Vi~~~r~~------~~l~~~~~----------------~~~~~~~~~d~ 59 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFARE--GAKVIATDINE------SKLQELEK----------------YPGIQTRVLDV 59 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCH------HHHGGGGG----------------STTEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCH------HHHHHHHh----------------ccCCceeeeec
Confidence 68999999999999999999999999 78899999853 34443321 24566777787
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEEeCCcc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVSTAYC 208 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vSSay~ 208 (762)
...+. .+.....+..+|++||+|+.... .+.++..+++|+.|+..+.+.+... .+-.++|++||..+
T Consensus 60 ~~~~~---~~~~~~~~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~ 136 (245)
T d2ag5a1 60 TKKKQ---IDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVAS 136 (245)
T ss_dssp TCHHH---HHHHHHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBT
T ss_pred ccccc---ccccccccccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhh
Confidence 65441 22333445679999999998653 2457789999999999998877642 23468999998754
Q ss_pred cCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc----CCCEEEEeeee
Q psy7542 209 HPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA----GMPCMILRPSI 284 (762)
Q Consensus 209 ~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~----glpv~IvRPs~ 284 (762)
.-. + . .....|+.+|+..+.+++..+.. |+.+..|.||.
T Consensus 137 ~~~--~-------~----------------------------~~~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~ 179 (245)
T d2ag5a1 137 SVK--G-------V----------------------------VNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGT 179 (245)
T ss_dssp TTB--C-------C----------------------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESC
T ss_pred ccC--C-------c----------------------------cchhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeece
Confidence 210 0 0 01157999999999988877763 89999999998
Q ss_pred eccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 285 IIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 285 V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
|-.+...- +......+......+... ....-+.-.+|+|+++..++...... -.++++.+.+|
T Consensus 180 i~T~~~~~---~~~~~~~~~~~~~~~~~~---------~pl~R~~~pedva~~v~fL~s~~s~~--iTG~~i~VDGG 242 (245)
T d2ag5a1 180 VDTPSLQE---RIQARGNPEEARNDFLKR---------QKTGRFATAEEIAMLCVYLASDESAY--VTGNPVIIDGG 242 (245)
T ss_dssp EECHHHHH---HHHHSSSHHHHHHHHHHT---------CTTSSCEEHHHHHHHHHHHHSGGGTT--CCSCEEEECTT
T ss_pred eechhhHh---hhhhhhhhHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhChhhCC--CcCceEEeCCC
Confidence 75432100 000000111111111111 11123556799999999988754431 25788888776
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.36 E-value=6.2e-12 Score=128.17 Aligned_cols=170 Identities=11% Similarity=0.065 Sum_probs=115.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
|+.|+||||||++.||..++++|++.|..++|++..|.... ++++. .....++.++.+|+
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~------~~~l~--------------~~~~~~~~~~~~Dv 60 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEK------ATELK--------------SIKDSRVHVLPLTV 60 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGG------CHHHH--------------TCCCTTEEEEECCT
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHH------HHHHH--------------HhhCCceEEEEEec
Confidence 35799999999999999999999999655689988887532 22221 12246899999999
Q ss_pred CCCCCCCCHHHHHhhc---------CCccEEEEcccccCc--------cccHHHHHHHhHHHHHHHHHHHHHc------C
Q psy7542 139 AVPDLGISAEDRQMLS---------ETIHIVYHIAATVRF--------DDYMQTYVFLNTRGTRDMLNLSKQM------I 195 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~---------~~vDiViH~AA~v~f--------~~~l~~~~~~NV~GT~~LLelA~~~------~ 195 (762)
++++ +++.++ ..+|++||+||.... .+.++..+++|+.|+..+.+.+... +
T Consensus 61 s~~~------~v~~~~~~i~~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~ 134 (250)
T d1yo6a1 61 TCDK------SLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASK 134 (250)
T ss_dssp TCHH------HHHHHHHHHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHS
T ss_pred CCHH------HHHHHHHHHHHHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccC
Confidence 9875 333322 138999999996421 1346778999999999888776421 0
Q ss_pred --------CccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHH
Q psy7542 196 --------HLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVV 267 (762)
Q Consensus 196 --------~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv 267 (762)
...+++.+|+..+...... .. .+. .....|+.||+....+.
T Consensus 135 ~~~~~~~~~~~~~i~~s~~~~~~~~~~-~~----~~~--------------------------~~~~aY~aSKaal~~l~ 183 (250)
T d1yo6a1 135 ESGDQLSVSRAAVITISSGLGSITDNT-SG----SAQ--------------------------FPVLAYRMSKAAINMFG 183 (250)
T ss_dssp SCSSCCCTTTCEEEEECCGGGCSTTCC-ST----TSS--------------------------SCBHHHHHHHHHHHHHH
T ss_pred CCCccccceeccccccccccccccCCc-cc----ccc--------------------------hhHHHHHHHHHHHHHHH
Confidence 1245667776533221110 00 000 00136999999988888
Q ss_pred HHHHHc----CCCEEEEeeeee
Q psy7542 268 TEYMEA----GMPCMILRPSII 285 (762)
Q Consensus 268 ~~~~~~----glpv~IvRPs~V 285 (762)
+..+.. |+.+..+-||.|
T Consensus 184 ~~la~el~~~gI~v~~i~PG~v 205 (250)
T d1yo6a1 184 RTLAVDLKDDNVLVVNFCPGWV 205 (250)
T ss_dssp HHHHHHTGGGTCEEEEEECCCC
T ss_pred HHHHHHhcccCeEEEEEecCCC
Confidence 777662 899999999865
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.34 E-value=5e-12 Score=130.70 Aligned_cols=230 Identities=18% Similarity=0.121 Sum_probs=144.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||++|||||++.||+.++++|++. |.+|++..|.. ++++++.+ .++.. .....++..+.+|+
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~--Ga~V~l~~r~~------~~l~~~~~-----~l~~~---~~~~~~~~~~~~Dv 66 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQE--GANVTITGRSS------ERLEETRQ-----IILKS---GVSEKQVNSVVADV 66 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHHTT---TCCGGGEEEEECCT
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HHHhc---CCCCCceEEEEccC
Confidence 68999999999999999999999999 78899999863 23332211 11111 11235789999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc--------cc---cHHHHHHHhHHHHHHHHHHHHHc--CCcc
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF--------DD---YMQTYVFLNTRGTRDMLNLSKQM--IHLQ 198 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f--------~~---~l~~~~~~NV~GT~~LLelA~~~--~~lk 198 (762)
++++ ++++++ ..+|++||+|+.... +. .++..+++|+.|+..+.+++... ++-.
T Consensus 67 s~~~------~v~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g 140 (272)
T d1xkqa_ 67 TTED------GQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKG 140 (272)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC
T ss_pred CCHH------HHHHHHHHHHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCC
Confidence 9876 555444 368999999997531 11 36778999999999998887542 1123
Q ss_pred EEEEEeCC-cccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----c
Q psy7542 199 LFVYVSTA-YCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----A 273 (762)
Q Consensus 199 ~fV~vSSa-y~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~ 273 (762)
.+|.++|. .+.... |. ...|+.||+..+.+.+..+. .
T Consensus 141 ~iI~~~Ss~a~~~~~----------~~----------------------------~~~Y~asKaal~~ltk~lA~el~~~ 182 (272)
T d1xkqa_ 141 EIVNVSSIVAGPQAQ----------PD----------------------------FLYYAIAKAALDQYTRSTAIDLAKF 182 (272)
T ss_dssp EEEEECCGGGSSSCC----------CS----------------------------SHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccchhccccCC----------CC----------------------------cchhhhHHHHHHHHHHHHHHHhccc
Confidence 56666654 332211 00 14799999988888877665 3
Q ss_pred CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHH---HHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCC
Q psy7542 274 GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLL---IGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPG 350 (762)
Q Consensus 274 glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li---~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~ 350 (762)
|+.+..|-||.|-.+... ....+.... ........ ..-...-+.-.+|+|++++.++...... -
T Consensus 183 gIrVN~I~PG~i~T~~~~-------~~~~~~~~~~~~~~~~~~~~-----~~~PlgR~g~pediA~~v~fL~S~~as~-~ 249 (272)
T d1xkqa_ 183 GIRVNSVSPGMVETGFTN-------AMGMPDQASQKFYNFMASHK-----ECIPIGAAGKPEHIANIILFLADRNLSF-Y 249 (272)
T ss_dssp TCEEEEEEECCBCSSHHH-------HTTCCHHHHHHHHHHHHHCT-----TTCTTSSCBCHHHHHHHHHHHHCHHHHT-T
T ss_pred CeEEEEEeeCCCcchhhh-------ccCCchHHHHHHHHHHHHHh-----cCCCCCCCcCHHHHHHHHHHHhCcchhC-C
Confidence 899999999987543211 111111110 00000000 0001122556799999998887532110 0
Q ss_pred CCceEEEecCC
Q psy7542 351 NTMRVINLTAN 361 (762)
Q Consensus 351 ~~~~iyNi~s~ 361 (762)
..++++.+.+|
T Consensus 250 iTG~~i~vDGG 260 (272)
T d1xkqa_ 250 ILGQSIVADGG 260 (272)
T ss_dssp CCSCEEEESTT
T ss_pred ccCeEEEeCcC
Confidence 14789988877
|
| >d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Vam7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.34 E-value=7.4e-13 Score=119.99 Aligned_cols=97 Identities=26% Similarity=0.380 Sum_probs=77.5
Q ss_pred cccccceeeecCCCCeEEEEEEEEEcCeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhch
Q psy7542 521 CISVSGYRLIECEKPYYVYVIHVRMFQQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCK 600 (762)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (762)
.|.|..++.. +.|++|.|++ ..|.|.||||||..||+ ++++.++
T Consensus 7 ~i~i~d~~i~---~~~~~Y~I~~----~~~~V~RRYsdF~~L~~-----------------------------~L~~~~~ 50 (117)
T d1kmda_ 7 RIKVDDVKIN---PKYVLYGVST----PNKRLYKRYSEFWKLKT-----------------------------RLERDVG 50 (117)
T ss_dssp CCEEEEEEEC---SSCEEEEEEC----SSCCEEECHHHHHHHHH-----------------------------HHHHHHC
T ss_pred EEEeCCCEEe---cCEEEEEEEE----CCEEEEehHHHHHHHHH-----------------------------HHHHHCC
Confidence 3555666553 3599999986 47899999999999999 6666653
Q ss_pred hhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcC--------CCCChhHHHHHHHHHHHHHHH
Q psy7542 601 YFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKI--------RSNQPKVLDERRHLLEIYLKE 672 (762)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 672 (762)
. ...|.||+|++ .+.+++++|+||..||.||+.
T Consensus 51 ~---------------------------------------~~~p~lP~K~~~~~~~~~~~~~~~~~ie~R~~~Le~yL~~ 91 (117)
T d1kmda_ 51 S---------------------------------------TIPYDFPEKPGVLDRRWQRRYDDPEMIDERRIGLERFLNE 91 (117)
T ss_dssp S---------------------------------------CCCCCCCCCCCSSCSTTCCCTTCHHHHHHHHTTHHHHHHH
T ss_pred C---------------------------------------CcCCCCCccccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 2 25788999985 467999999999999999999
Q ss_pred HHhcCCC-----hHHHHhhhCCCCC
Q psy7542 673 MFKFGPS-----RNQVLAFLGVNSK 692 (762)
Q Consensus 673 ~~~~~~~-----~~~~~~~~~~~~~ 692 (762)
++..... ...+.+||+++..
T Consensus 92 ll~~p~~~~~~~s~~l~~FL~~s~~ 116 (117)
T d1kmda_ 92 LYNDRFDSRWRDTKIAQDFLQLSKP 116 (117)
T ss_dssp HHCCSSCCHHHHSHHHHHHTTCCCC
T ss_pred HHcCcchhhhcCCHHHHHHhCCCCC
Confidence 9987753 2799999999843
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.34 E-value=4.4e-12 Score=131.33 Aligned_cols=232 Identities=16% Similarity=0.082 Sum_probs=145.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||++|||||++.||+.++++|++. |.+|++..|.. ++++++.+ .+... .....++..+.+|+
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~------~~l~~~~~-----~i~~~---~~~~~~~~~~~~Dv 65 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKE--GAQVTITGRNE------DRLEETKQ-----QILKA---GVPAEKINAVVADV 65 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH-----HHHHT---TCCGGGEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHH-----HHHHc---CCCCcceEEEEeeC
Confidence 58999999999999999999999999 78899999853 23332211 11111 11235789999999
Q ss_pred CCCCCCCCHHHHHhhc-------CCccEEEEcccccCc---------cccHHHHHHHhHHHHHHHHHHHHHc---CCccE
Q psy7542 139 AVPDLGISAEDRQMLS-------ETIHIVYHIAATVRF---------DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQL 199 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f---------~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~ 199 (762)
++++ ++++++ ..+|++||+|+.... .+.++..+++|+.|+..+.+++... .+-..
T Consensus 66 ~~~~------~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ 139 (274)
T d1xhla_ 66 TEAS------GQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEI 139 (274)
T ss_dssp TSHH------HHHHHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCHH------HHHHHHHHHHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhccccccccccccccccccccccc
Confidence 9876 455443 368999999985421 1346778999999999988887542 23456
Q ss_pred EEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCC
Q psy7542 200 FVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGM 275 (762)
Q Consensus 200 fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~gl 275 (762)
++++||..+..... . ...|+.||+.-+.+.+..+. .|+
T Consensus 140 ii~~ss~~~~~~~~----------~----------------------------~~~Y~asKaal~~ltk~lA~ela~~gI 181 (274)
T d1xhla_ 140 VNVSSIVAGPQAHS----------G----------------------------YPYYACAKAALDQYTRCTAIDLIQHGV 181 (274)
T ss_dssp EEECCGGGSSSCCT----------T----------------------------SHHHHHHHHHHHHHHHHHHHHHGGGTC
T ss_pred ccchhhhhccccCC----------C----------------------------CceehhhhhHHHHHHHHHHHHHhHhCC
Confidence 77777654432110 0 14799999998888877665 389
Q ss_pred CEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhc-ccCCCCCCce
Q psy7542 276 PCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWN-FLSNPGNTMR 354 (762)
Q Consensus 276 pv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~-~~~~~~~~~~ 354 (762)
++..+.||.|-.+...... ......... ........ ..-..--+...+|+|++++.++.. ... --.++
T Consensus 182 rVN~I~PG~i~T~~~~~~~---~~~~~~~~~-~~~~~~~~-----~~iPlgR~g~pediA~~v~fL~S~d~s~--~itG~ 250 (274)
T d1xhla_ 182 RVNSVSPGAVATGFMGAMG---LPETASDKL-YSFIGSRK-----ECIPVGHCGKPEEIANIIVFLADRNLSS--YIIGQ 250 (274)
T ss_dssp EEEEEEECCBCSSHHHHTT---CCHHHHHHH-HHHHHHCT-----TTCTTSSCBCHHHHHHHHHHHHCHHHHT--TCCSC
T ss_pred ceeeeccCCCcCchhhhhc---ccchhhHHH-HHHHHHHH-----cCCCCCCCcCHHHHHHHHHHHcCCcccc--CccCc
Confidence 9999999987543211000 000000001 11100000 000112255689999999988742 221 01478
Q ss_pred EEEecCC
Q psy7542 355 VINLTAN 361 (762)
Q Consensus 355 iyNi~s~ 361 (762)
++.+.+|
T Consensus 251 ~i~vDGG 257 (274)
T d1xhla_ 251 SIVADGG 257 (274)
T ss_dssp EEEESTT
T ss_pred EEEeCcC
Confidence 9999887
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=7.4e-12 Score=130.36 Aligned_cols=170 Identities=18% Similarity=0.153 Sum_probs=120.9
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.|.||||||++.||++++++|++.|..+ .|+...|... ..+++.+..+. . .....++..+.+|++
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~---~~~~l~~~~~~---------~--~~~~~~~~~~~~Dv~ 67 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLK---TQGRLWEAARA---------L--ACPPGSLETLQLDVR 67 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGG---GTHHHHHHHHH---------T--TCCTTSEEEEECCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChh---hhHHHHHHHHH---------H--hccCCceEEEecccc
Confidence 4678999999999999999999996554 5555566432 23444433210 0 123468999999999
Q ss_pred CCCCCCCHHHHHhhcC-----CccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHH-c--CCccEEEEEe
Q psy7542 140 VPDLGISAEDRQMLSE-----TIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQ-M--IHLQLFVYVS 204 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~-----~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~-~--~~lk~fV~vS 204 (762)
+++ +++.+++ .+|+++|+|+.... .+.++..+++|+.|+.++.+++.. + .+-.++|++|
T Consensus 68 ~~~------~~~~~~~~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~is 141 (285)
T d1jtva_ 68 DSK------SVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTG 141 (285)
T ss_dssp CHH------HHHHHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred chH------hhhhhhhhccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEe
Confidence 876 4554432 48999999987643 245677899999999998887753 1 2446899999
Q ss_pred CCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEE
Q psy7542 205 TAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMIL 280 (762)
Q Consensus 205 Say~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~Iv 280 (762)
|..+.... |. ...|+.||+..+.+.+..+. .|+.++.|
T Consensus 142 S~~g~~~~----------~~----------------------------~~~Y~asKaal~~l~~~la~El~~~gIrVn~V 183 (285)
T d1jtva_ 142 SVGGLMGL----------PF----------------------------NDVYCASKFALEGLCESLAVLLLPFGVHLSLI 183 (285)
T ss_dssp EGGGTSCC----------TT----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEE
T ss_pred chhhcCCC----------CC----------------------------chHHHHHHHHHHHHHHHHHHHhhccCcEEEEE
Confidence 98764321 11 15799999988887776655 38999999
Q ss_pred eeeeeccC
Q psy7542 281 RPSIIIPI 288 (762)
Q Consensus 281 RPs~V~G~ 288 (762)
.||.|-.+
T Consensus 184 ~PG~v~T~ 191 (285)
T d1jtva_ 184 ECGPVHTA 191 (285)
T ss_dssp EECCBCC-
T ss_pred ecCCCCCh
Confidence 99987543
|
| >d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: p47phox NADPH oxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=3e-12 Score=119.34 Aligned_cols=103 Identities=17% Similarity=0.273 Sum_probs=80.7
Q ss_pred cccccceeeecCCCCeEEEEEEEEEc-CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhc
Q psy7542 521 CISVSGYRLIECEKPYYVYVIHVRMF-QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNC 599 (762)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (762)
.|++.+++....+..||||.|.|... +..|+|.||||||..||. ++++.+
T Consensus 7 ~i~i~~~e~~~~~~k~~vY~I~v~~~d~~~~~V~RRYsdF~~Lh~-----------------------------~L~~~f 57 (140)
T d1kq6a_ 7 HIALLGFEKRFVPSQHYVYMFLVKWQDLSEKVVYRRFTEIYEFHK-----------------------------TLKEMF 57 (140)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEEEETTCCEEEEEECHHHHHHHHH-----------------------------HHHHHC
T ss_pred EEEEeeeEEecCCCCeEEEEEEEEEcCCCEEEEEEEHHHHHHHHH-----------------------------HHHHHC
Confidence 57888888777778899999999884 677999999999999998 666655
Q ss_pred hhhhHhhhcccccccCCCCcccccchhhhhccccccccccCCCCCCCCC--------CcCCCCChhHHHHHHHHHHHHHH
Q psy7542 600 KYFIYQWLGLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPP--------KKIRSNQPKVLDERRHLLEIYLK 671 (762)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 671 (762)
+. ...|.+|+ +.....+.+++|+||..||.||+
T Consensus 58 p~---------------------------------------~~~~~~p~k~~~~~~~~~~~~~~~~~ie~R~~~Le~yL~ 98 (140)
T d1kq6a_ 58 PI---------------------------------------EAGAINPENRIIPHLPAPKWFDGQRAAENRQGTLTEYCS 98 (140)
T ss_dssp TT---------------------------------------TTTSSCGGGCCSCCCCCCCCCCSHHHHHHHHHHHHHHHH
T ss_pred Cc---------------------------------------ccCCCCchhhccccccccccCCCHHHHHHHHHHHHHHHH
Confidence 32 12233333 23456689999999999999999
Q ss_pred HHHhcCCC---hHHHHhhhCCCC
Q psy7542 672 EMFKFGPS---RNQVLAFLGVNS 691 (762)
Q Consensus 672 ~~~~~~~~---~~~~~~~~~~~~ 691 (762)
.+++..+. ...|..||....
T Consensus 99 ~Ll~~p~~l~~s~~v~~Fl~~~~ 121 (140)
T d1kq6a_ 99 TLMSLPTKISRCPHLLDFFKVRP 121 (140)
T ss_dssp HHTTSCHHHHTCHHHHHHHSCCH
T ss_pred HHHhCChhhhCCHHHHHHhCCCc
Confidence 99987752 288999998763
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.31 E-value=1.9e-11 Score=124.36 Aligned_cols=171 Identities=12% Similarity=0.148 Sum_probs=117.3
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcC-CCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTC-ENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~g-p~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.|+|||||||+.||..++++|++.. .+.+|++..|..... +.++++. ....++.++.+|++
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~---~~~~~~~---------------~~~~~~~~~~~Dvs 63 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQA---KELEDLA---------------KNHSNIHILEIDLR 63 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSC---HHHHHHH---------------HHCTTEEEEECCTT
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH---HHHHHHH---------------hcCCcEEEEEEEec
Confidence 4789999999999999999998632 366999999986543 2233321 11368999999999
Q ss_pred CCCCCCCHHHHHh----h--cCCccEEEEcccccCcc--------ccHHHHHHHhHHHHHHHHHHHHHc-----------
Q psy7542 140 VPDLGISAEDRQM----L--SETIHIVYHIAATVRFD--------DYMQTYVFLNTRGTRDMLNLSKQM----------- 194 (762)
Q Consensus 140 ~~~LGLs~~~l~~----l--~~~vDiViH~AA~v~f~--------~~l~~~~~~NV~GT~~LLelA~~~----------- 194 (762)
+++ +.+.+.+ + ...+|++||+||..... +.++..+++|+.|+..+.+.+...
T Consensus 64 ~~~---~v~~~~~~i~~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~ 140 (248)
T d1snya_ 64 NFD---AYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQ 140 (248)
T ss_dssp CGG---GHHHHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred cHH---HHHHHHhhhHHHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccc
Confidence 987 2222211 1 13589999999974321 236678999999998888776421
Q ss_pred ---CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHH
Q psy7542 195 ---IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYM 271 (762)
Q Consensus 195 ---~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~ 271 (762)
.+-.++|.+||..+.....+ .|. ...|+.||+....+.+..+
T Consensus 141 ~~~~~~g~ii~i~S~~g~~~~~~-------~~~----------------------------~~~Y~aSKaal~~lt~~la 185 (248)
T d1snya_ 141 PMGVGRAAIINMSSILGSIQGNT-------DGG----------------------------MYAYRTSKSALNAATKSLS 185 (248)
T ss_dssp CSSTTTCEEEEECCGGGCSTTCC-------SCC----------------------------CHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccCCCC-------CCC----------------------------hHHHHHHHHHHHHHHHHHH
Confidence 12368899999765322110 000 1379999998888877665
Q ss_pred H----cCCCEEEEeeeeecc
Q psy7542 272 E----AGMPCMILRPSIIIP 287 (762)
Q Consensus 272 ~----~glpv~IvRPs~V~G 287 (762)
. .|+.+..+.||.|-.
T Consensus 186 ~e~~~~gI~vn~v~PG~v~T 205 (248)
T d1snya_ 186 VDLYPQRIMCVSLHPGWVKT 205 (248)
T ss_dssp HHHGGGTCEEEEECCCSBCS
T ss_pred HHhCCCCeEEEEcCCCcccC
Confidence 4 389999999987643
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=2.4e-11 Score=123.34 Aligned_cols=219 Identities=13% Similarity=0.056 Sum_probs=138.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||++|||||++.||+.++++|++. |.+|++..|+... .++-.++ ...+......|+
T Consensus 3 lkGKvalITGas~GIG~aia~~la~~--G~~V~~~~r~~~~--~~~~~~~------------------l~~~~~~~~~~~ 60 (248)
T d2o23a1 3 VKGLVAVITGGASGLGLATAERLVGQ--GASAVLLDLPNSG--GEAQAKK------------------LGNNCVFAPADV 60 (248)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECTTSS--HHHHHHH------------------HCTTEEEEECCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCChHH--HHHHHHH------------------hCCCcccccccc
Confidence 58999999999999999999999999 7889999997643 1111111 134667778888
Q ss_pred CCCCCCC-CHHHHHhhcCCccEEEEcccccCc-------------cccHHHHHHHhHHHHHHHHHHHHHc---------C
Q psy7542 139 AVPDLGI-SAEDRQMLSETIHIVYHIAATVRF-------------DDYMQTYVFLNTRGTRDMLNLSKQM---------I 195 (762)
Q Consensus 139 ~~~~LGL-s~~~l~~l~~~vDiViH~AA~v~f-------------~~~l~~~~~~NV~GT~~LLelA~~~---------~ 195 (762)
.+...-- ............|.++++++.... .+.++..+++|+.|+..+.+++... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~ 140 (248)
T d2o23a1 61 TSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGG 140 (248)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTS
T ss_pred cccccccccccccccccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccC
Confidence 7654100 000111222357888888765421 1356778999999999999888542 1
Q ss_pred CccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--
Q psy7542 196 HLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-- 273 (762)
Q Consensus 196 ~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-- 273 (762)
+-.++|++||.++..... ....|+.||+..+.+.+..+..
T Consensus 141 ~~G~Ii~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~la~e~~ 182 (248)
T d2o23a1 141 QRGVIINTASVAAFEGQV--------------------------------------GQAAYSASKGGIVGMTLPIARDLA 182 (248)
T ss_dssp CCEEEEEECCTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred CceEEEEecchhhccCCC--------------------------------------CchHHHHHHHHHHHHHHHHHHHhc
Confidence 224799999997642211 0147999999999998887763
Q ss_pred --CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCC
Q psy7542 274 --GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGN 351 (762)
Q Consensus 274 --glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~ 351 (762)
|+.+..+.||.|-.+..+..+ ........... + ..--+...+|+|++++.++.....
T Consensus 183 ~~gIrvN~I~PG~i~T~~~~~~~---------~~~~~~~~~~~----p----l~~R~g~peevA~~v~fL~s~~~i---- 241 (248)
T d2o23a1 183 PIGIRVMTIAPGLFGTPLLTSLP---------EKVCNFLASQV----P----FPSRLGDPAEYAHLVQAIIENPFL---- 241 (248)
T ss_dssp GGTEEEEEEEECCBCCC-------------------CHHHHTC----S----SSCSCBCHHHHHHHHHHHHHCTTC----
T ss_pred ccCcceeeeccCceecchhhcCC---------HHHHHHHHhcC----C----CCCCCcCHHHHHHHHHHHHhCCCC----
Confidence 899999999987544322110 00111111100 0 001245679999999988865433
Q ss_pred CceEEEe
Q psy7542 352 TMRVINL 358 (762)
Q Consensus 352 ~~~iyNi 358 (762)
.|++.++
T Consensus 242 tGq~I~v 248 (248)
T d2o23a1 242 NGEVIRL 248 (248)
T ss_dssp CSCEEEE
T ss_pred CceEeEC
Confidence 4566553
|
| >d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Sorting nexin grd19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.28 E-value=6.2e-12 Score=116.06 Aligned_cols=95 Identities=19% Similarity=0.297 Sum_probs=72.4
Q ss_pred CCCeEEEEEEEEEc-----CeEEEEEeehhhHHhhhhcCCCCcccCCCCccccCCCchhhhhhhHHHHhhhchhhhHhhh
Q psy7542 533 EKPYYVYVIHVRMF-----QQHYIVEKRYSELLSWHSEGFGLGILDGKGKYAYAPPYSRTLKQNRRQKKRNCKYFIYQWL 607 (762)
Q Consensus 533 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
.++|++|.|+|+.+ +++|.|.||||||..||. ++++.+...
T Consensus 25 ~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~-----------------------------~L~~~~~~~----- 70 (132)
T d1ocsa_ 25 KGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRK-----------------------------CLIKEISML----- 70 (132)
T ss_dssp CCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHH-----------------------------HHHHHHHHT-----
T ss_pred ccCeEEEEEEEEecCCCCCCceEEEEeeHHHHHHHHH-----------------------------HHHHhcccc-----
Confidence 47899999999864 788999999999999998 555544321
Q ss_pred cccccccCCCCcccccchhhhhccccccccccCCCCCCCCCCcCC--CCChhHHHHHHHHHHHHHHHHHhcCCCh---HH
Q psy7542 608 GLNNVLWYPGGAMTNTVNLYLYLDFGFFQNKTKFSTPSFPPKKIR--SNQPKVLDERRHLLEIYLKEMFKFGPSR---NQ 682 (762)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 682 (762)
..+....|.+|+|+.. +++++++|+||..||.||+.++.....+ ..
T Consensus 71 -----------------------------~~~~~~~p~~p~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~~s~~ 121 (132)
T d1ocsa_ 71 -----------------------------NHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKV 121 (132)
T ss_dssp -----------------------------TCTTCCCCCCTTCCCSSCTTSHHHHHHHHHHHHHHHHHHHTCHHHHHHCHH
T ss_pred -----------------------------cCcccccCCCcccccccccCCHHHHHHHHHHHHHHHHHHHcCHHHHhCCHH
Confidence 1122366778888753 5689999999999999999998775543 24
Q ss_pred HHhhhCCC
Q psy7542 683 VLAFLGVN 690 (762)
Q Consensus 683 ~~~~~~~~ 690 (762)
+..||..+
T Consensus 122 l~~FLe~~ 129 (132)
T d1ocsa_ 122 LVRFIEAE 129 (132)
T ss_dssp HHHHHHCS
T ss_pred HHhcCCcc
Confidence 67899644
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=7.3e-11 Score=121.51 Aligned_cols=206 Identities=14% Similarity=0.078 Sum_probs=136.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+|||||||+.||++++++|++. |.+|++..|.. ++++++.+. +. ......+..+.+|+
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~--G~~Vil~~r~~------~~l~~~~~~-----~~-----~~~~~~~~~~~~d~ 73 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKM--GAHVVVTARSK------ETLQKVVSH-----CL-----ELGAASAHYIAGTM 73 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHHH-----HH-----HHTCSEEEEEECCT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCH------HHHHHHHHH-----Hh-----hhhcccchhhhhhh
Confidence 79999999999999999999999999 78999999963 445443221 11 12345677888888
Q ss_pred CCCCCC-CCHHHHHhhcCCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-C-CccEEEEEeCCcc
Q psy7542 139 AVPDLG-ISAEDRQMLSETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-I-HLQLFVYVSTAYC 208 (762)
Q Consensus 139 ~~~~LG-Ls~~~l~~l~~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~-~lk~fV~vSSay~ 208 (762)
.+...- .-.+........+|+++++|+.... .+.+...+++|+.|+..+.+.+... + +-.++|.+||..+
T Consensus 74 ~~~~~~~~~~~~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~ 153 (269)
T d1xu9a_ 74 EDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAG 153 (269)
T ss_dssp TCHHHHHHHHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGG
T ss_pred hhHHHHHHHHHHHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchh
Confidence 775410 0001122233468999999987532 1345678999999998888777532 1 1258999999865
Q ss_pred cCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----c--CCCEEEEee
Q psy7542 209 HPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----A--GMPCMILRP 282 (762)
Q Consensus 209 ~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~--glpv~IvRP 282 (762)
.... |. -..|+.||+..+.+.+..+. . ++.+..+.|
T Consensus 154 ~~~~----------p~----------------------------~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~P 195 (269)
T d1xu9a_ 154 KVAY----------PM----------------------------VAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVL 195 (269)
T ss_dssp TSCC----------TT----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEE
T ss_pred cCCC----------CC----------------------------chHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEec
Confidence 4321 11 15899999998887776654 2 577888999
Q ss_pred eeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhccc
Q psy7542 283 SIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFL 346 (762)
Q Consensus 283 s~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~ 346 (762)
|.|-. .+......+ .......+.+++|+.++.......
T Consensus 196 G~v~T-----------------~~~~~~~~~---------~~~~~~~~~e~~a~~i~~~~~~~~ 233 (269)
T d1xu9a_ 196 GLIDT-----------------ETAMKAVSG---------IVHMQAAPKEECALEIIKGGALRQ 233 (269)
T ss_dssp CCBCC-----------------HHHHHHSCG---------GGGGGCBCHHHHHHHHHHHHHTTC
T ss_pred CcCCC-----------------cHHHHhccC---------CccccCCCHHHHHHHHHHHhhcCC
Confidence 86522 122222221 122345778999999988776543
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=2.9e-11 Score=123.71 Aligned_cols=171 Identities=16% Similarity=0.105 Sum_probs=123.7
Q ss_pred ccCCCEEEEECCCChhHHHHHHHHHHcC-CCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 58 TLEHKNIFITGASGFVGKVLLEKILRTC-ENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 58 ~~~gk~VLVTGATGFLG~~LvekLL~~g-p~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
-++||+++|||||+.||+.++++|.+.. .|.+|++..|+. ++++++.+ .+..+ ....++..+.+
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~------~~l~~~~~-----~l~~~----~~~~~~~~~~~ 67 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSE------SMLRQLKE-----ELGAQ----QPDLKVVLAAA 67 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCH------HHHHHHHH-----HHHHH----CTTSEEEEEEC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCH------HHHHHHHH-----HHHhh----cCCceEEEEEc
Confidence 3689999999999999999999998732 367999999963 33433321 11111 12357899999
Q ss_pred ecCCCCCCCCHHHHHhhcC-----------CccEEEEcccccC------cc----ccHHHHHHHhHHHHHHHHHHHHHc-
Q psy7542 137 DVAVPDLGISAEDRQMLSE-----------TIHIVYHIAATVR------FD----DYMQTYVFLNTRGTRDMLNLSKQM- 194 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~-----------~vDiViH~AA~v~------f~----~~l~~~~~~NV~GT~~LLelA~~~- 194 (762)
|+++++ +++++++ .+|+++|+||... +. +.++..+++|+.|+..+.+.+...
T Consensus 68 Dvs~~~------~v~~l~~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m 141 (259)
T d1oaaa_ 68 DLGTEA------GVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAF 141 (259)
T ss_dssp CTTSHH------HHHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTS
T ss_pred cCCCHH------HHHHHHHHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 999876 5554431 3679999998643 11 346778999999999999988653
Q ss_pred CC----ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHH
Q psy7542 195 IH----LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEY 270 (762)
Q Consensus 195 ~~----lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~ 270 (762)
.. -.++|++||..+..... . ...|+.||+..+.+.+..
T Consensus 142 ~~~~~~~g~Iv~isS~~~~~~~~----------~----------------------------~~~Y~asKaal~~lt~~l 183 (259)
T d1oaaa_ 142 QDSPGLSKTVVNISSLCALQPYK----------G----------------------------WGLYCAGKAARDMLYQVL 183 (259)
T ss_dssp CCCTTCEEEEEEECCGGGTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcccccccccccccCCCc----------c----------------------------chHHHHHHHHHHHHHHHH
Confidence 11 35899999986643211 0 157999999999999888
Q ss_pred HHc--CCCEEEEeeeeecc
Q psy7542 271 MEA--GMPCMILRPSIIIP 287 (762)
Q Consensus 271 ~~~--glpv~IvRPs~V~G 287 (762)
+.. |+.+..+.||.|-.
T Consensus 184 a~e~~gIrVn~v~PG~i~T 202 (259)
T d1oaaa_ 184 AAEEPSVRVLSYAPGPLDN 202 (259)
T ss_dssp HHHCTTEEEEEEECCSBSS
T ss_pred HhCCCCCEEEEEEcCCCCC
Confidence 765 89999999987744
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.27 E-value=4.3e-11 Score=120.86 Aligned_cols=206 Identities=9% Similarity=0.048 Sum_probs=133.9
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
+||+||||||+|.||++++++|++. +.+|+++.|...... .....+..|..
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~--G~~V~~~~~~~~~~~---------------------------~~~~~~~~~~~ 51 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRAR--NWWVASIDVVENEEA---------------------------SASVIVKMTDS 51 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTT--TCEEEEEESSCCTTS---------------------------SEEEECCCCSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCccccc---------------------------cccceeecccC
Confidence 5899999999999999999999998 788888888654311 12222333332
Q ss_pred CCCCC-CCHHHHHhhcC--CccEEEEcccccC----c----cccHHHHHHHhHHHHHHHHHHHHH-cCCccEEEEEeCCc
Q psy7542 140 VPDLG-ISAEDRQMLSE--TIHIVYHIAATVR----F----DDYMQTYVFLNTRGTRDMLNLSKQ-MIHLQLFVYVSTAY 207 (762)
Q Consensus 140 ~~~LG-Ls~~~l~~l~~--~vDiViH~AA~v~----f----~~~l~~~~~~NV~GT~~LLelA~~-~~~lk~fV~vSSay 207 (762)
+.+-. .-......... ++|++||+||... . .+.++..+++|+.++..+.+++.. +++-.++|++||..
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~ 131 (236)
T d1dhra_ 52 FTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKA 131 (236)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHH
Confidence 22100 00011112222 4899999998532 1 134566899999999999888865 33346899999986
Q ss_pred ccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc------CCCEEEEe
Q psy7542 208 CHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA------GMPCMILR 281 (762)
Q Consensus 208 ~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~------glpv~IvR 281 (762)
+..... . ...|+.||+..+.+.+..+.. |+.+..+.
T Consensus 132 ~~~~~~----------~----------------------------~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~ 173 (236)
T d1dhra_ 132 ALDGTP----------G----------------------------MIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVL 173 (236)
T ss_dssp GGSCCT----------T----------------------------BHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEE
T ss_pred HcCCcc----------C----------------------------CcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEE
Confidence 543211 0 157999999999999988642 68999999
Q ss_pred eeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 282 PSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 282 Ps~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
||.|-.+ +...... ....-.+++.+++|+.+..++..... ...+.+..+.+
T Consensus 174 PG~v~T~-----------------~~~~~~~---------~~~~~~~~~pe~va~~~~~l~s~~~~--~i~G~~i~v~~ 224 (236)
T d1dhra_ 174 PVTLDTP-----------------MNRKSMP---------EADFSSWTPLEFLVETFHDWITGNKR--PNSGSLIQVVT 224 (236)
T ss_dssp ESCEECH-----------------HHHHHST---------TSCGGGSEEHHHHHHHHHHHHTTTTC--CCTTCEEEEEE
T ss_pred eccCcCC-----------------cchhhCc---------cchhhcCCCHHHHHHHHHHHhCCCcc--CCCCCeEEEEE
Confidence 9876432 1111111 11234578999999999988765433 12466666543
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.25 E-value=5.9e-11 Score=121.12 Aligned_cols=216 Identities=9% Similarity=-0.022 Sum_probs=139.5
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPD 142 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~ 142 (762)
|++||||++.||+.++++|++. |.+|.+..|..+. .+.++.... ....+|+++++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~--Ga~V~i~~r~~~~---~~~~~~~~~--------------------~~~~~dv~~~~ 56 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEA--GHTVACHDESFKQ---KDELEAFAE--------------------TYPQLKPMSEQ 56 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHT--TCEEEECCGGGGS---HHHHHHHHH--------------------HCTTSEECCCC
T ss_pred EEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCHHH---HHHHHhhhC--------------------cEEEeccCCHH
Confidence 7999999999999999999999 7788888886543 222322110 11246777765
Q ss_pred CCCCHHHHHhh-------cCCccEEEEcccccC----c----cccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEEe
Q psy7542 143 LGISAEDRQML-------SETIHIVYHIAATVR----F----DDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVS 204 (762)
Q Consensus 143 LGLs~~~l~~l-------~~~vDiViH~AA~v~----f----~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vS 204 (762)
+.+++ ...+|++||+|+... + .+.++..+++|+.|+..+.+++... .+-.++|++|
T Consensus 57 ------~~~~~~~~~~~~~G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~is 130 (252)
T d1zmta1 57 ------EPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFIT 130 (252)
T ss_dssp ------SHHHHHHHHHHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred ------HHHHHHHHHHHHcCCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccc
Confidence 23332 246899999998542 1 1457778999999999988876532 2346899999
Q ss_pred CCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCCEEEE
Q psy7542 205 TAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMPCMIL 280 (762)
Q Consensus 205 Say~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glpv~Iv 280 (762)
|..+..... . ...|+.||+..+.+.+..+. .|+++..|
T Consensus 131 S~~~~~~~~----------~----------------------------~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I 172 (252)
T d1zmta1 131 SATPFGPWK----------E----------------------------LSTYTSARAGACTLANALSKELGEYNIPVFAI 172 (252)
T ss_dssp CSTTTSCCT----------T----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred ccccccccc----------c----------------------------ccccccccccHHHHHHHHHHHhcccCcEEEEE
Confidence 986643211 0 14799999988888877765 38999999
Q ss_pred eeeeeccCCCCCCCCCCCCC--CCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEe
Q psy7542 281 RPSIIIPIWKDPLPGWTDNI--NGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINL 358 (762)
Q Consensus 281 RPs~V~G~~~eP~pGWidn~--~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi 358 (762)
.||.|-.+... .+.... .........+.+.. ...-+...+|+|++++.++..... -..++++++
T Consensus 173 ~PG~i~T~~~~---~~~~~~~~~~~~e~~~~~~~~~---------pl~R~g~pedvA~~v~fL~S~~s~--~iTG~~i~v 238 (252)
T d1zmta1 173 GPNYLHSEDSP---YFYPTEPWKTNPEHVAHVKKVT---------ALQRLGTQKELGELVAFLASGSCD--YLTGQVFWL 238 (252)
T ss_dssp EESSBCCBTCC---SSCBHHHHTTCHHHHHHHHHHS---------SSSSCBCHHHHHHHHHHHHTTSCG--GGTTCEEEE
T ss_pred ecCCCcCcchh---hhhhcccccCCHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCchhc--CCcCCeEEE
Confidence 99988655322 110000 00011112111111 011256789999999998865432 114788988
Q ss_pred cCC
Q psy7542 359 TAN 361 (762)
Q Consensus 359 ~s~ 361 (762)
.+|
T Consensus 239 dGG 241 (252)
T d1zmta1 239 AGG 241 (252)
T ss_dssp STT
T ss_pred CCC
Confidence 877
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=1.2e-10 Score=118.47 Aligned_cols=222 Identities=14% Similarity=0.093 Sum_probs=146.5
Q ss_pred ccCCCEEEEECCCC--hhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 58 TLEHKNIFITGASG--FVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 58 ~~~gk~VLVTGATG--FLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
+++||+||||||+| .||+++++.|++. |.+|++..|..+ ..++++++.. ...+...+.
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~--G~~V~i~~~~~~---~~~~~~~~~~---------------~~~~~~~~~ 61 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDK---LKGRVEEFAA---------------QLGSDIVLQ 61 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHT--TCEEEEEESSTT---THHHHHHHHH---------------HTTCCCEEE
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHc--CCEEEEEeCCHH---HHHHHHHHHh---------------hcCCcceee
Confidence 47899999999999 7899999999998 788898888743 2344444321 124566778
Q ss_pred eecCCCCCCCCHHHHHh-------hcCCccEEEEcccccCcc------------ccHHHHHHHhHHHHHHHHHHHHHc-C
Q psy7542 136 GDVAVPDLGISAEDRQM-------LSETIHIVYHIAATVRFD------------DYMQTYVFLNTRGTRDMLNLSKQM-I 195 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~-------l~~~vDiViH~AA~v~f~------------~~l~~~~~~NV~GT~~LLelA~~~-~ 195 (762)
.|+.+.. +... .....|+++|+|+..... +.+.....+|+.+...+.+.+... .
T Consensus 62 ~~~~~~~------~~~~~~~~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (258)
T d1qsga_ 62 CDVAEDA------SIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLN 135 (258)
T ss_dssp CCTTCHH------HHHHHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEE
T ss_pred cccchHH------HHHHHHHHhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8887654 2222 223579999999875321 224456778888888888877653 2
Q ss_pred CccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc--
Q psy7542 196 HLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA-- 273 (762)
Q Consensus 196 ~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~-- 273 (762)
+-..+|++||..+.... | ....|+.||+.-+.+++..+..
T Consensus 136 ~~~~Ii~iss~~~~~~~----------~----------------------------~~~~Y~~sKaal~~ltr~lA~el~ 177 (258)
T d1qsga_ 136 PGSALLTLSYLGAERAI----------P----------------------------NYNVMGLAKASLEANVRYMANAMG 177 (258)
T ss_dssp EEEEEEEEECGGGTSBC----------T----------------------------TTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEecchhhccCC----------C----------------------------CcHHHHHHHHHHHHHHHHHHHHhC
Confidence 23568888887543211 1 0157999999999999888763
Q ss_pred --CCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCC
Q psy7542 274 --GMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGN 351 (762)
Q Consensus 274 --glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~ 351 (762)
|+++..++||.|-.+..+. ............... ...-+...+|+|++++.++.+... --
T Consensus 178 ~~gIrVN~I~PG~i~T~~~~~-------~~~~~~~~~~~~~~~---------pl~R~~~peeia~~v~fL~s~~s~--~i 239 (258)
T d1qsga_ 178 PEGVRVNAISAGPIRTLAASG-------IKDFRKMLAHCEAVT---------PIRRTVTIEDVGNSAAFLCSDLSA--GI 239 (258)
T ss_dssp TTTEEEEEEEECCCCCTTGGG-------STTHHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHTSGGGT--TC
T ss_pred ccCceeecccccccccccccc-------cchhhhHHHHHHhCC---------CCCCCcCHHHHHHHHHHHhCchhc--Cc
Confidence 8999999999886553221 111122222221110 011256789999999998865432 12
Q ss_pred CceEEEecCC
Q psy7542 352 TMRVINLTAN 361 (762)
Q Consensus 352 ~~~iyNi~s~ 361 (762)
.++++.+.+|
T Consensus 240 tG~~i~vDGG 249 (258)
T d1qsga_ 240 SGEVVHVDGG 249 (258)
T ss_dssp CSCEEEESTT
T ss_pred cCceEEECcC
Confidence 5788888877
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.22 E-value=9.9e-11 Score=117.95 Aligned_cols=206 Identities=11% Similarity=0.104 Sum_probs=130.8
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
..+||||||+|.||++++++|++. |.+|+++.|.+.... .....+.+|..+
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~--G~~V~~~~~~~~~~~---------------------------~~~~~~~~~~~~ 52 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKN--GYTVLNIDLSANDQA---------------------------DSNILVDGNKNW 52 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHT--TEEEEEEESSCCTTS---------------------------SEEEECCTTSCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCchhcc---------------------------cccceeccccCc
Confidence 356899999999999999999998 789999999764321 122333444443
Q ss_pred CCCCC-CHHHHHhh--cCCccEEEEcccccCc----c----ccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEEeCCcc
Q psy7542 141 PDLGI-SAEDRQML--SETIHIVYHIAATVRF----D----DYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYVSTAYC 208 (762)
Q Consensus 141 ~~LGL-s~~~l~~l--~~~vDiViH~AA~v~f----~----~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~vSSay~ 208 (762)
.+--. ..+..... ...+|++||+||.... . +.++..+++|+.|+..+.+++... +.-.++|++||..+
T Consensus 53 ~~~~~~~~~~~~~~~~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~ 132 (235)
T d1ooea_ 53 TEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAA 132 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred hhHHHHHHHHHHHHhcCCCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHh
Confidence 22000 00011111 2358999999986321 1 335567999999999998888653 22358999999865
Q ss_pred cCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc------CCCEEEEee
Q psy7542 209 HPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA------GMPCMILRP 282 (762)
Q Consensus 209 ~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~------glpv~IvRP 282 (762)
..... . ...|+.||+..+.+.+..+.+ ++.+..+.|
T Consensus 133 ~~~~~----------~----------------------------~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~P 174 (235)
T d1ooea_ 133 MGPTP----------S----------------------------MIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMP 174 (235)
T ss_dssp GSCCT----------T----------------------------BHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEE
T ss_pred cCCcc----------c----------------------------ccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEec
Confidence 33211 0 157999999999999987642 556777788
Q ss_pred eeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecC
Q psy7542 283 SIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTA 360 (762)
Q Consensus 283 s~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s 360 (762)
|.+-. .+...... ......+++.+++++.++..+...... ...+....+.+
T Consensus 175 g~~~T-----------------~~~~~~~~---------~~~~~~~~~~~~va~~~~~~l~~~~~~-~~tG~~i~v~~ 225 (235)
T d1ooea_ 175 VTLDT-----------------PMNRKWMP---------NADHSSWTPLSFISEHLLKWTTETSSR-PSSGALLKITT 225 (235)
T ss_dssp SCBCC-----------------HHHHHHST---------TCCGGGCBCHHHHHHHHHHHHHCGGGC-CCTTCEEEEEE
T ss_pred CcCcC-----------------cchhhhCc---------CCccccCCCHHHHHHHHHHHhcCcccc-CCCceEEEEEe
Confidence 75522 12222211 122356889999999987655544321 12456666643
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=2.2e-10 Score=118.03 Aligned_cols=124 Identities=16% Similarity=0.075 Sum_probs=89.8
Q ss_pred CCEE-EEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 61 HKNI-FITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 61 gk~V-LVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
||+| +||||++.||..++++|++. .+.+|++..|.. +++++..+ .++.+ ..++.++.+|++
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~-~g~~Vi~~~r~~------~~~~~~~~-----~l~~~------~~~~~~~~~Dvs 63 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRL-FSGDVVLTARDV------TRGQAAVQ-----QLQAE------GLSPRFHQLDID 63 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHH-SSSEEEEEESSH------HHHHHHHH-----HHHHT------TCCCEEEECCTT
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHh-CCCEEEEEECCH------HHHHHHHH-----HHHhc------CCcEEEEEEecC
Confidence 6666 89999999999999999987 256899999964 33433221 12221 357889999999
Q ss_pred CCCCCCCHHHHHhhc-------CCccEEEEcccccCc-------cccHHHHHHHhHHHHHHHHHHHHHc-CCccEEEEEe
Q psy7542 140 VPDLGISAEDRQMLS-------ETIHIVYHIAATVRF-------DDYMQTYVFLNTRGTRDMLNLSKQM-IHLQLFVYVS 204 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~-------~~vDiViH~AA~v~f-------~~~l~~~~~~NV~GT~~LLelA~~~-~~lk~fV~vS 204 (762)
+.+ ++++++ ..+|++||+||.... .+.++..+++|+.|+..+.+.+... +.-.++|.+|
T Consensus 64 ~~~------sv~~~~~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 64 DLQ------SIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp CHH------HHHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CHH------HHHHHHHHHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 876 444332 368999999997532 2346678999999999999988652 2225899999
Q ss_pred CCcc
Q psy7542 205 TAYC 208 (762)
Q Consensus 205 Say~ 208 (762)
|..+
T Consensus 138 S~~~ 141 (275)
T d1wmaa1 138 SIMS 141 (275)
T ss_dssp CHHH
T ss_pred ccce
Confidence 9744
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.18 E-value=4.8e-10 Score=114.94 Aligned_cols=222 Identities=13% Similarity=0.055 Sum_probs=136.6
Q ss_pred ccCCCEEEEECCCC--hhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 58 TLEHKNIFITGASG--FVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 58 ~~~gk~VLVTGATG--FLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
+++||++|||||+| .||.+++++|++. |.+|++..|+.+ .+++++++.+ ......++.
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~--Ga~V~i~~r~~~---~~~~~~~l~~---------------~~~~~~~~~ 61 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQ--GATLAFTYLNES---LEKRVRPIAQ---------------ELNSPYVYE 61 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTT--TCEEEEEESSTT---THHHHHHHHH---------------HTTCCCEEE
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHC--CCEEEEEeCCHH---HHHHHHHHHh---------------hCCceeEee
Confidence 47899999999988 7999999999998 888999999743 3445544321 124566788
Q ss_pred eecCCCCCCCCHHHHHhh-------cCCccEEEEcccccCcc--------ccHHHH---HHHhHHHHHHHHHHHHHcCCc
Q psy7542 136 GDVAVPDLGISAEDRQML-------SETIHIVYHIAATVRFD--------DYMQTY---VFLNTRGTRDMLNLSKQMIHL 197 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l-------~~~vDiViH~AA~v~f~--------~~l~~~---~~~NV~GT~~LLelA~~~~~l 197 (762)
.|++++. +...+ ...+|++||+|+..... ...... ..++..+...+........+-
T Consensus 62 ~d~~~~~------~~~~~~~~~~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (274)
T d2pd4a1 62 LDVSKEE------HFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNN 135 (274)
T ss_dssp CCTTCHH------HHHHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE
T ss_pred ecccchh------hHHHHHHHHHHHcCCCCeEEeecccccccccccccccccchhhhhhhcccccccccccccccccccc
Confidence 8988765 33333 34689999999975321 112222 223333444444444333233
Q ss_pred cEEEEEeCCcc-cCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----
Q psy7542 198 QLFVYVSTAYC-HPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME---- 272 (762)
Q Consensus 198 k~fV~vSSay~-~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~---- 272 (762)
...|.++|..+ .... .....|+.+|+..+.+++..+.
T Consensus 136 ~~~i~~~s~~~~~~~~--------------------------------------~~~~~y~asK~al~~ltr~lA~e~~~ 177 (274)
T d2pd4a1 136 GASVLTLSYLGSTKYM--------------------------------------AHYNVMGLAKAALESAVRYLAVDLGK 177 (274)
T ss_dssp EEEEEEEECGGGTSBC--------------------------------------TTCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred Ccceeeeccccccccc--------------------------------------ccchhhhHHHHHHHHHHHhhHHHhcC
Confidence 34444444433 2211 1125799999999998877665
Q ss_pred cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCC
Q psy7542 273 AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNT 352 (762)
Q Consensus 273 ~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~ 352 (762)
.|+++..+.||.+..+... ............... ....-+...+|+|++++.++..... -..
T Consensus 178 ~GIrvN~I~PG~v~T~~~~-------~~~~~~~~~~~~~~~---------~p~~r~~~pedIA~~v~fL~S~~s~--~it 239 (274)
T d2pd4a1 178 HHIRVNALSAGPIRTLASS-------GIADFRMILKWNEIN---------APLRKNVSLEEVGNAGMYLLSSLSS--GVS 239 (274)
T ss_dssp TTCEEEEEEECCCCCTTGG-------GSTTHHHHHHHHHHH---------STTSSCCCHHHHHHHHHHHHSGGGT--TCC
T ss_pred cCceecccccCcccCcccc-------ccCchHHHHHHHhhh---------hhccCCcCHHHHHHHHHHHhChhhC--CCc
Confidence 3899999999977554321 111111111111110 1123467899999999988875432 125
Q ss_pred ceEEEecCC
Q psy7542 353 MRVINLTAN 361 (762)
Q Consensus 353 ~~iyNi~s~ 361 (762)
++++.+..|
T Consensus 240 G~~i~vDGG 248 (274)
T d2pd4a1 240 GEVHFVDAG 248 (274)
T ss_dssp SCEEEESTT
T ss_pred CceEEECCC
Confidence 789999887
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.13 E-value=2.4e-10 Score=114.50 Aligned_cols=211 Identities=14% Similarity=0.092 Sum_probs=134.6
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
+|++||||||+.||++++++|++. |.+|++..|.... .+...+.+|+++
T Consensus 1 DK~alITGas~GIG~aiA~~la~~--Ga~V~i~~~~~~~-----------------------------~~~~~~~~d~~~ 49 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKAR--GYRVVVLDLRREG-----------------------------EDLIYVEGDVTR 49 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHH--TCEEEEEESSCCS-----------------------------SSSEEEECCTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCccc-----------------------------ccceEeeccccc
Confidence 589999999999999999999999 7889999986532 345667888877
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccC-----------ccccHHHHHHHhHHHHHHHHHHHHHc---------CCccEE
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVR-----------FDDYMQTYVFLNTRGTRDMLNLSKQM---------IHLQLF 200 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~-----------f~~~l~~~~~~NV~GT~~LLelA~~~---------~~lk~f 200 (762)
...-.............+.+++.++... ..+.++..+++|+.+...+...+... .+-.++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~I 129 (241)
T d1uaya_ 50 EEDVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVI 129 (241)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEE
T ss_pred hhhhHHHHHhhhccccccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceee
Confidence 5410000011111123455555554321 11345678899999988888776432 123589
Q ss_pred EEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHH----cCCC
Q psy7542 201 VYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYME----AGMP 276 (762)
Q Consensus 201 V~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~----~glp 276 (762)
|++||..+..... ....|+.||+..+.+.+..+. .|++
T Consensus 130 i~isS~~~~~~~~--------------------------------------~~~~Y~asKaal~~lt~~lA~ela~~gIr 171 (241)
T d1uaya_ 130 VNTASVAAFEGQI--------------------------------------GQAAYAASKGGVVALTLPAARELAGWGIR 171 (241)
T ss_dssp EEECCTHHHHCCT--------------------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred eeecchhhccCCC--------------------------------------CchhhHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 9999986532210 115899999999988887776 3899
Q ss_pred EEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEE
Q psy7542 277 CMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVI 356 (762)
Q Consensus 277 v~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iy 356 (762)
+..|-||.|-.+... .. ............. ..--+.-.+|+|++++.++..... .+++.
T Consensus 172 VN~V~PG~i~T~~~~-------~~--~~~~~~~~~~~~~--------~~~R~g~pedvA~~v~fL~s~~~i----TG~~i 230 (241)
T d1uaya_ 172 VVTVAPGLFDTPLLQ-------GL--PEKAKASLAAQVP--------FPPRLGRPEEYAALVLHILENPML----NGEVV 230 (241)
T ss_dssp EEEEEECSCSSHHHH-------TS--CHHHHHHHHTTCC--------SSCSCCCHHHHHHHHHHHHHCTTC----CSCEE
T ss_pred eeeecCCcccccccc-------hh--hhhHHHHHHhcCC--------CCCCCcCHHHHHHHHHHHHhCCCC----CCCEE
Confidence 999999987543211 00 1111112222110 001245679999999988875433 57899
Q ss_pred EecCC
Q psy7542 357 NLTAN 361 (762)
Q Consensus 357 Ni~s~ 361 (762)
++.+|
T Consensus 231 ~VDGG 235 (241)
T d1uaya_ 231 RLDGA 235 (241)
T ss_dssp EESTT
T ss_pred EECCc
Confidence 88776
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.05 E-value=8.5e-10 Score=112.48 Aligned_cols=233 Identities=11% Similarity=0.017 Sum_probs=136.9
Q ss_pred ccCCCEEEEECCCC--hhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 58 TLEHKNIFITGASG--FVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 58 ~~~gk~VLVTGATG--FLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
.++||+||||||+| .||.+++++|++. |.+|++..|... ++.+.+. .....+...+.
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~--Ga~Vil~~~~~~------~~~~~~~-------------~~~~~~~~~~~ 61 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQ--GAQLVLTGFDRL------RLIQRIT-------------DRLPAKAPLLE 61 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHT--TCEEEEEECSCH------HHHHHHH-------------TTSSSCCCEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHc--CCEEEEEeCChH------HHHHHHH-------------HHcCCceeeEe
Confidence 47899999999766 4999999999998 788888888642 2211111 12345778899
Q ss_pred eecCCCCCCCCHHHH----Hhhc---CCccEEEEcccccCc---------c---ccHHHHHHHhHHHHHHHHHHHHHcCC
Q psy7542 136 GDVAVPDLGISAEDR----QMLS---ETIHIVYHIAATVRF---------D---DYMQTYVFLNTRGTRDMLNLSKQMIH 196 (762)
Q Consensus 136 GDl~~~~LGLs~~~l----~~l~---~~vDiViH~AA~v~f---------~---~~l~~~~~~NV~GT~~LLelA~~~~~ 196 (762)
+|+++++ +.+++ .+.+ ..+|+++|+|+.... + ..+...+.+|+.+.....+.+....+
T Consensus 62 ~dv~~~~---~~~~~~~~v~~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (268)
T d2h7ma1 62 LDVQNEE---HLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMN 138 (268)
T ss_dssp CCTTCHH---HHHHHHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEE
T ss_pred eeccccc---ccccccchhhhccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcc
Confidence 9999864 11111 2222 347999999996421 1 12334567777777777776655433
Q ss_pred ccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHHHHHc---
Q psy7542 197 LQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTEYMEA--- 273 (762)
Q Consensus 197 lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~~~~~--- 273 (762)
-...+.++|....... +....|+.+|+..+.+++..+..
T Consensus 139 ~~~~i~~~s~~~~~~~--------------------------------------p~~~~y~~sK~a~~~ltr~lA~e~~~ 180 (268)
T d2h7ma1 139 PGGSIVGMDFDPSRAM--------------------------------------PAYNWMTVAKSALESVNRFVAREAGK 180 (268)
T ss_dssp EEEEEEEEECCCSSCC--------------------------------------TTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccccccccccccC--------------------------------------cccchhhccccchhhccccchhhhhc
Confidence 3344444444322211 11258999999999998877763
Q ss_pred -CCCEEEEeeeeeccCCCCCCCCCCCCCCCchH--HHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCC
Q psy7542 274 -GMPCMILRPSIIIPIWKDPLPGWTDNINGPTG--LLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPG 350 (762)
Q Consensus 274 -glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~--li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~ 350 (762)
|+.+..|.||.|-.+..+.+.+ ...+... ........... .....+-+...+|+|+++..++.+... -
T Consensus 181 ~gIrVN~V~PG~v~T~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~pl~rr~~~p~dva~~v~fL~Sd~a~--~ 251 (268)
T d2h7ma1 181 YGVRSNLVAAGPIRTLAMSAIVG---GALGEEAGAQIQLLEEGWDQ----RAPIGWNMKDATPVAKTVCALLSDWLP--A 251 (268)
T ss_dssp TTCEEEEEEECCCCCHHHHHHHT---TTTCHHHHHHHHHHHHHHHH----HCTTCCCTTCCHHHHHHHHHHHSSSCT--T
T ss_pred cCCcceEEecCCCCChhhhhhcc---chhhhhhccchHHHHHHHHh----cCCCCCCCCCHHHHHHHHHHHhCchhc--C
Confidence 8999999999775432110000 0111100 00000000000 000112356688999999998854332 1
Q ss_pred CCceEEEecCC
Q psy7542 351 NTMRVINLTAN 361 (762)
Q Consensus 351 ~~~~iyNi~s~ 361 (762)
-.++++.+.+|
T Consensus 252 iTG~~i~vDGG 262 (268)
T d2h7ma1 252 TTGDIIYADGG 262 (268)
T ss_dssp CCSEEEEESTT
T ss_pred ccCCEEEECcC
Confidence 25788888877
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=98.96 E-value=2.8e-08 Score=101.66 Aligned_cols=223 Identities=10% Similarity=0.028 Sum_probs=137.3
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPD 142 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~ 142 (762)
.++||||++.||+.++++|++. |.+|++..|.... ..+.+.+.++ .........+.+|.....
T Consensus 4 VAlITGas~GIG~aiA~~la~~--Ga~V~i~~~~~~~--~~~~~~~~l~-------------~~~~~~~~~~~~d~~~~~ 66 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAE--GYAVCLHYHRSAA--EANALSATLN-------------ARRPNSAITVQADLSNVA 66 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCHH--HHHHHHHHHH-------------HHSTTCEEEEECCCSSSC
T ss_pred EEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCCHH--HHHHHHHHHH-------------hhcCCceEEEEeeccccc
Confidence 5899999999999999999999 7888887775421 1222222211 112345566666654432
Q ss_pred C----------CCC-HHHHHhhc-------CCccEEEEcccccCcc-------c--------------cHHHHHHHhHHH
Q psy7542 143 L----------GIS-AEDRQMLS-------ETIHIVYHIAATVRFD-------D--------------YMQTYVFLNTRG 183 (762)
Q Consensus 143 L----------GLs-~~~l~~l~-------~~vDiViH~AA~v~f~-------~--------------~l~~~~~~NV~G 183 (762)
- .++ .+++++++ ..+|++||+||..... + .+...+.+|+.+
T Consensus 67 ~~~~~~~~~~~dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 146 (284)
T d1e7wa_ 67 TAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIA 146 (284)
T ss_dssp BCCCC----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHH
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheee
Confidence 1 011 22444443 4689999999975311 0 122367889999
Q ss_pred HHHHHHHHHHc---------CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCc
Q psy7542 184 TRDMLNLSKQM---------IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPN 254 (762)
Q Consensus 184 T~~LLelA~~~---------~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn 254 (762)
+..+.+.+... .+..++|.+||........ ...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~s~~~~~~~~--------------------------------------~~~ 188 (284)
T d1e7wa_ 147 PYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLL--------------------------------------GYT 188 (284)
T ss_dssp HHHHHHHHHHHHHTSCGGGSCSCEEEEEECCTTTTSCCT--------------------------------------TCH
T ss_pred eeeeeccccchhhhhHHHhcCCCCcccccccccccCCcc--------------------------------------cee
Confidence 99888876542 1234677777775432211 014
Q ss_pred hhHhhhHHHHHHHHHHHH----cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCccccccc
Q psy7542 255 GYAYTKCLCEGVVTEYME----AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLP 330 (762)
Q Consensus 255 ~Y~~SK~~aE~lv~~~~~----~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~Vp 330 (762)
.|+.||+..+.+.+..+. .|+++..+-||.+-... ..+............ ...-+..
T Consensus 189 ~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~~~-----------~~~~~~~~~~~~~~p--------l~~R~~~ 249 (284)
T d1e7wa_ 189 IYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVD-----------DMPPAVWEGHRSKVP--------LYQRDSS 249 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGG-----------GSCHHHHHHHHTTCT--------TTTSCBC
T ss_pred eeccccccchhhhHHHHHHhCCccccccccccccccccc-----------cCCHHHHHHHHhcCC--------CCCCCCC
Confidence 799999999998888776 38999999998532111 112233333332211 0123567
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 331 VDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 331 VDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
.+|+|++++.++..... --.|+++.+.+|
T Consensus 250 peeiA~~v~fL~S~~s~--~itG~~i~VDGG 278 (284)
T d1e7wa_ 250 AAEVSDVVIFLCSSKAK--YITGTCVKVDGG 278 (284)
T ss_dssp HHHHHHHHHHHHSGGGT--TCCSCEEEESTT
T ss_pred HHHHHHHHHHHhCchhc--CccCCeEEECcC
Confidence 89999999988865432 125788988877
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.91 E-value=9.6e-08 Score=96.50 Aligned_cols=221 Identities=10% Similarity=0.033 Sum_probs=134.0
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPD 142 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~ 142 (762)
++|||||++.||+.++++|++. |.+|++..|.... ..+++.+.+ . .....++..+..|+.+..
T Consensus 3 vAlVTGas~GIG~aia~~la~~--G~~Vvi~~r~~~~--~~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~~ 65 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQ--GFRVVVHYRHSEG--AAQRLVAEL--------N-----AARAGSAVLCKGDLSLSS 65 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCHH--HHHHHHHHH--------H-----HHSTTCEEEEECCCSSST
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCchH--HHHHHHHHH--------H-----hhcCCceEEEecccccch
Confidence 6899999999999999999999 7899999987432 122222111 1 122356677777776543
Q ss_pred CCCCHHHHHhh-------cCCccEEEEcccccCcc------------------ccHHHHHHHhHHHHHHHHHHHHHcC--
Q psy7542 143 LGISAEDRQML-------SETIHIVYHIAATVRFD------------------DYMQTYVFLNTRGTRDMLNLSKQMI-- 195 (762)
Q Consensus 143 LGLs~~~l~~l-------~~~vDiViH~AA~v~f~------------------~~l~~~~~~NV~GT~~LLelA~~~~-- 195 (762)
- ..+...++ ...+|++||+|+..... .........|+.+.......+....
T Consensus 66 ~--~~~~~~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (266)
T d1mxha_ 66 S--LLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGE 143 (266)
T ss_dssp T--HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC--
T ss_pred h--HHHHHHHHHHHHHHHhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhcccccc
Confidence 1 12223222 24699999999965311 1122355667776666665554421
Q ss_pred ------CccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHHHH
Q psy7542 196 ------HLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVVTE 269 (762)
Q Consensus 196 ------~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv~~ 269 (762)
....++.+|+..+.... | ....|+.||+.-+.+.+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~----------~----------------------------~~~~Y~asKaal~~lt~~ 185 (266)
T d1mxha_ 144 GGAWRSRNLSVVNLCDAMTDLPL----------P----------------------------GFCVYTMAKHALGGLTRA 185 (266)
T ss_dssp -----CCCEEEEEECCGGGGSCC----------T----------------------------TCHHHHHHHHHHHHHHHH
T ss_pred ccccccccccchhhhhccccccC----------c----------------------------chhhhhhhHHHHhhhHHH
Confidence 12344555554432211 1 125899999999988887
Q ss_pred HHH----cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcc
Q psy7542 270 YME----AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNF 345 (762)
Q Consensus 270 ~~~----~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~ 345 (762)
.+. .|+++..+.||.|..+. ..+......+..... ..+-+...+|+|++++.++.+.
T Consensus 186 lA~e~~~~gIrVN~I~PG~i~t~~-----------~~~~~~~~~~~~~~p--------l~r~~~~peeva~~v~fL~s~~ 246 (266)
T d1mxha_ 186 AALELAPRHIRVNAVAPGLSLLPP-----------AMPQETQEEYRRKVP--------LGQSEASAAQIADAIAFLVSKD 246 (266)
T ss_dssp HHHHHGGGTEEEEEEEESSBSCCS-----------SSCHHHHHHHHTTCT--------TTSCCBCHHHHHHHHHHHHSGG
T ss_pred HHHHhCccCcEEEEeccCcEeccc-----------cCCHHHHHHHHhcCC--------CCCCCCCHHHHHHHHHHHhCch
Confidence 766 38999999999774332 112233333322210 0022357889999999988764
Q ss_pred cCCCCCCceEEEecCC
Q psy7542 346 LSNPGNTMRVINLTAN 361 (762)
Q Consensus 346 ~~~~~~~~~iyNi~s~ 361 (762)
..- -.|+++++.+|
T Consensus 247 s~~--itG~~i~vDGG 260 (266)
T d1mxha_ 247 AGY--ITGTTLKVDGG 260 (266)
T ss_dssp GTT--CCSCEEEESTT
T ss_pred hCC--ccCCeEEECcc
Confidence 321 14788988877
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=98.85 E-value=3.7e-08 Score=101.55 Aligned_cols=243 Identities=11% Similarity=-0.001 Sum_probs=134.4
Q ss_pred cCCCEEEEECCCC--hhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGASG--FVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGATG--FLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
++||++|||||+| .||..+++.|++. |.+|++..|..........+..... .-.+...+. ......++..+..
T Consensus 6 L~gK~alVTGass~~GIG~aiA~~la~~--Ga~Vvi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~ 80 (297)
T d1d7oa_ 6 LRGKRAFIAGIADDNGYGWAVAKSLAAA--GAEILVGTWVPALNIFETSLRRGKF--DQSRVLPDG-SLMEIKKVYPLDA 80 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHT--TCEEEEEEEHHHHHHHHHHHHTTTT--TGGGBCTTS-SBCCEEEEEEECT
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHC--CCEEEEEeCchhhhhhHHHHHHhhh--hhhhhhhhh-hhhhhhhhhhhhh
Confidence 5899999999987 8999999999999 7888888885321111111110000 000000000 0000112233332
Q ss_pred ecCCCCCC------------C---CHHH----HHhhcCCccEEEEcccccC-----c----cccHHHHHHHhHHHHHHHH
Q psy7542 137 DVAVPDLG------------I---SAED----RQMLSETIHIVYHIAATVR-----F----DDYMQTYVFLNTRGTRDML 188 (762)
Q Consensus 137 Dl~~~~LG------------L---s~~~----l~~l~~~vDiViH~AA~v~-----f----~~~l~~~~~~NV~GT~~LL 188 (762)
++.++..- . +.++ ..+-...+|++||+||... + .+.+...+++|+.++..+.
T Consensus 81 ~~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~ 160 (297)
T d1d7oa_ 81 VFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLL 160 (297)
T ss_dssp TCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHH
T ss_pred hccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhh
Confidence 22221100 0 0111 1122347899999998632 2 1346678999999999999
Q ss_pred HHHHHcC-CccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHHHHHH
Q psy7542 189 NLSKQMI-HLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLCEGVV 267 (762)
Q Consensus 189 elA~~~~-~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~aE~lv 267 (762)
+.+.... .-...+.+++........ ..+..|+.+|+..+.++
T Consensus 161 ~~~~~~~~~~g~~~~~~~~~~~~~~~-------------------------------------~~~~~y~~aKaa~~~l~ 203 (297)
T d1d7oa_ 161 SHFLPIMNPGGASISLTYIASERIIP-------------------------------------GYGGGMSSAKAALESDT 203 (297)
T ss_dssp HHHGGGEEEEEEEEEEECGGGTSCCT-------------------------------------TCTTTHHHHHHHHHHHH
T ss_pred hHHHHHhhcCCcceeeeehhhccccc-------------------------------------ccccceecccccccccc
Confidence 8876531 112445555543221110 11257999998887776
Q ss_pred HHHHH-----cCCCEEEEeeeeeccCCCCCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHh
Q psy7542 268 TEYME-----AGMPCMILRPSIIIPIWKDPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLST 342 (762)
Q Consensus 268 ~~~~~-----~glpv~IvRPs~V~G~~~eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~ 342 (762)
+..+. .|+++..+.||.|-.+... .......+........+ ...+...+|+|++++.++
T Consensus 204 ~~~a~e~~~~~gIrvN~I~PG~i~T~~~~-------~~~~~~~~~~~~~~~~P---------lgR~~~peevA~~v~fL~ 267 (297)
T d1d7oa_ 204 RVLAFEAGRKQNIRVNTISAGPLGSRAAK-------AIGFIDTMIEYSYNNAP---------IQKTLTADEVGNAAAFLV 267 (297)
T ss_dssp HHHHHHHHHHHCCEEEEEEECCCBCCCSS-------CCSHHHHHHHHHHHHSS---------SCCCBCHHHHHHHHHHHT
T ss_pred cccchhccccceEEecccccccccchhhh-------hccCCHHHHHHHHhCCC---------CCCCCCHHHHHHHHHHHh
Confidence 55332 2899999999988654322 11112223222222110 123567899999999988
Q ss_pred hcccCCCCCCceEEEecCC
Q psy7542 343 WNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 343 ~~~~~~~~~~~~iyNi~s~ 361 (762)
...... -.++++.+.+|
T Consensus 268 S~~a~~--itGq~i~vDGG 284 (297)
T d1d7oa_ 268 SPLASA--ITGATIYVDNG 284 (297)
T ss_dssp SGGGTT--CCSCEEEESTT
T ss_pred CchhcC--CcCceEEECcC
Confidence 654321 25788888776
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=98.82 E-value=9.3e-08 Score=100.66 Aligned_cols=182 Identities=10% Similarity=0.067 Sum_probs=110.4
Q ss_pred CCCEEEEEC--CCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 60 EHKNIFITG--ASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 60 ~gk~VLVTG--ATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
++|.+|||| ++..||..+++.|.+. |.+|++..|..... ...........-....... ............|
T Consensus 1 n~kVAlITGaa~s~GIG~aiA~~la~~--GA~V~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 73 (329)
T d1uh5a_ 1 NEDICFIAGIGDTNGYGWGIAKELSKR--NVKIIFGIWPPVYN---IFMKNYKNGKFDNDMIIDK--DKKMNILDMLPFD 73 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHT--TCEEEEEECGGGHH---HHHHHHHTTTTTGGGEETT--TEECCEEEEEECC
T ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHc--CCEEEEEeCchhhh---hhhHHHHHHhhhhHHHHHH--Hhhhhhhhccccc
Confidence 478999999 5569999999999998 78888887764321 1111111100000000000 0111122233333
Q ss_pred cC--------------------CCCCCCCHHH----HHhhcCCccEEEEcccccC-----c----cccHHHHHHHhHHHH
Q psy7542 138 VA--------------------VPDLGISAED----RQMLSETIHIVYHIAATVR-----F----DDYMQTYVFLNTRGT 184 (762)
Q Consensus 138 l~--------------------~~~LGLs~~~----l~~l~~~vDiViH~AA~v~-----f----~~~l~~~~~~NV~GT 184 (762)
+. +.. +.+. ..+...++|++||+||... + .+.+...+++|+.|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~ 150 (329)
T d1uh5a_ 74 ASFDTANDIDEETKNNKRYNMLQNY---TIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSL 150 (329)
T ss_dssp TTCSSGGGCCHHHHTSHHHHTCCCC---SHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHH
T ss_pred ceehhhcccchhhhhhhhhhhhhHH---HHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHH
Confidence 32 222 1111 1223357999999998643 2 145677899999999
Q ss_pred HHHHHHHHHc-CCccEEEEEeCCcccCCCcccccccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCCCchhHhhhHHH
Q psy7542 185 RDMLNLSKQM-IHLQLFVYVSTAYCHPKEKVLEEKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDFPNGYAYTKCLC 263 (762)
Q Consensus 185 ~~LLelA~~~-~~lk~fV~vSSay~~~~~~~i~E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~pn~Y~~SK~~a 263 (762)
..+.+.+... +.-.++|.+||..+.... | .+...|+.||+..
T Consensus 151 ~~~~k~~~~~m~~~GsIv~iss~~~~~~~--------p-----------------------------~y~~~y~asKaal 193 (329)
T d1uh5a_ 151 ISLCKYFVNIMKPQSSIISLTYHASQKVV--------P-----------------------------GYGGGMSSAKAAL 193 (329)
T ss_dssp HHHHHHHGGGEEEEEEEEEEECGGGTSCC--------T-----------------------------TCTTTHHHHHHHH
T ss_pred HHHHHHHHhhcccccccccceeehhcccc--------c-----------------------------ccchhhhhhhccc
Confidence 9998888653 333588999887553321 0 1124699999988
Q ss_pred HHHHHHHHH----c-CCCEEEEeeeeeccC
Q psy7542 264 EGVVTEYME----A-GMPCMILRPSIIIPI 288 (762)
Q Consensus 264 E~lv~~~~~----~-glpv~IvRPs~V~G~ 288 (762)
|.+++..+. . |+++..|.||.|-.+
T Consensus 194 ~~ltr~lA~Ela~~~gIRVNaI~PG~i~T~ 223 (329)
T d1uh5a_ 194 ESDTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECCCCCT
T ss_pred cccchhhHHHHhcccCcEEEEEecCcccch
Confidence 888876653 3 899999999987543
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=98.76 E-value=2e-07 Score=93.71 Aligned_cols=235 Identities=12% Similarity=-0.031 Sum_probs=127.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|.|+||||+|.||++++++|++. |.+|+++.|+.... ..|+.+.
T Consensus 2 kVvlITGas~GIG~aiA~~la~~--Ga~V~~~~~~~~~~----------------------------------~~d~~~~ 45 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAA--GHQIVGIDIRDAEV----------------------------------IADLSTA 45 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSSSSE----------------------------------ECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECChHHH----------------------------------HHHhcCH
Confidence 68999999999999999999998 78899999864321 1233222
Q ss_pred CCC--CCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHc---CCccEEEEEeCCcccCCCcccc
Q psy7542 142 DLG--ISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQM---IHLQLFVYVSTAYCHPKEKVLE 216 (762)
Q Consensus 142 ~LG--Ls~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~---~~lk~fV~vSSay~~~~~~~i~ 216 (762)
.-. ...+...+....+|+++|+|+.....+.+.....+|..+...+.+..... ........+++.....-....
T Consensus 46 ~~~~~~~~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 124 (257)
T d1fjha_ 46 EGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDK- 124 (257)
T ss_dssp HHHHHHHHHHHTTCTTCCSEEEECCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGG-
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEcCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhh-
Confidence 100 00001112224589999999987777778888889999888877665432 133455556554321111000
Q ss_pred cccCCCCCChhhHHHHHHhhhHHHHHHHHHhhhcCC--CchhHhhhHHHHHHHHHHHH----cCCCEEEEeeeeeccCCC
Q psy7542 217 EKTYPPPVSPHNVIEKAELLSKNELELLKQELLQDF--PNGYAYTKCLCEGVVTEYME----AGMPCMILRPSIIIPIWK 290 (762)
Q Consensus 217 E~~~~~p~~p~~~~~~~e~l~~e~l~~~tp~l~~~~--pn~Y~~SK~~aE~lv~~~~~----~glpv~IvRPs~V~G~~~ 290 (762)
.+. ......-..-.+..+. ...+.. ...|+.||+..+.+.+..+. .|+++..+.||.|-.+.-
T Consensus 125 -----~~~-----~~~~~~g~~~~i~s~~-~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~ 193 (257)
T d1fjha_ 125 -----NPL-----ALALEAGEEAKARAIV-EHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLL 193 (257)
T ss_dssp -----CTT-----HHHHHHTCHHHHHHHH-HTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC------
T ss_pred -----hhh-----hhhccCCcEEEEeeeh-hccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhH
Confidence 000 0000000000000010 111111 13599999999998887765 389999999998754321
Q ss_pred CCCCCCCCCCCCchHHHHHHhcCCeEEEeeCCCcccccccHHHHHHHHHHHhhcccCCCCCCceEEEecCC
Q psy7542 291 DPLPGWTDNINGPTGLLIGAGKGIIRTMYCDYSTCADFLPVDVLVNGVLLSTWNFLSNPGNTMRVINLTAN 361 (762)
Q Consensus 291 eP~pGWidn~~gp~~li~~~~~G~l~~i~gd~~~~~d~VpVDdvA~aii~a~~~~~~~~~~~~~iyNi~s~ 361 (762)
+. ............+ .....--+...+|+|+++..++...... -.|+++.+.+|
T Consensus 194 ~~-------~~~~~~~~~~~~~--------~~~PlgR~g~p~eva~~v~fL~S~~s~~--itG~~i~vDGG 247 (257)
T d1fjha_ 194 QA-------GLQDPRYGESIAK--------FVPPMGRRAEPSEMASVIAFLMSPAASY--VHGAQIVIDGG 247 (257)
T ss_dssp ------------------------------CCCSTTSCCCTHHHHHHHHHHTSGGGTT--CCSCEEEESTT
T ss_pred Hh-------hcCCHHHHHHHHh--------cCCCCCCCcCHHHHHHHHHHHhCchhCC--ccCceEEeCCC
Confidence 10 0000001111111 0011123556799999999988654321 15788888776
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=98.54 E-value=4.1e-08 Score=95.37 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=64.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+|+||||+|.||+.+++.|++. +.+|++..|.. ++++++.+ .+.. ..++..+.+|+
T Consensus 21 l~gK~vlItGasgGIG~~ia~~la~~--G~~V~~~~r~~------~~~~~~~~-----~~~~-------~~~~~~~~~d~ 80 (191)
T d1luaa1 21 VKGKKAVVLAGTGPVGMRSAALLAGE--GAEVVLCGRKL------DKAQAAAD-----SVNK-------RFKVNVTAAET 80 (191)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSH------HHHHHHHH-----HHHH-------HHTCCCEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhh--ccchhhcccch------HHHHHHHH-----HHHh-------ccchhhhhhhc
Confidence 58999999999999999999999999 77899999974 34433321 1111 13556788999
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAAT 166 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~ 166 (762)
++.. ++++++.++|+|||+|+.
T Consensus 81 ~~~~------~~~~~~~~iDilin~Ag~ 102 (191)
T d1luaa1 81 ADDA------SRAEAVKGAHFVFTAGAI 102 (191)
T ss_dssp CSHH------HHHHHTTTCSEEEECCCT
T ss_pred ccHH------HHHHHhcCcCeeeecCcc
Confidence 8765 789999999999999985
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.06 E-value=0.0013 Score=60.05 Aligned_cols=114 Identities=12% Similarity=0.058 Sum_probs=74.6
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
+|.|+||+|.+|+.++-.|... +-+ ++.+++..+. +....++.. ...... ..+-+..
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~-~~~~elvLiDi~~~----~~~a~Dl~~-------------~~~~~~---~~~~~~~- 59 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNS-PLVSRLTLYDIAHT----PGVAADLSH-------------IETRAT---VKGYLGP- 59 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTC-TTCSEEEEEESSSH----HHHHHHHTT-------------SSSSCE---EEEEESG-
T ss_pred eEEEECCCChHHHHHHHHHHhC-CccceEEEEecccc----chhhHHHhh-------------hhhhcC---CCeEEcC-
Confidence 6999999999999999888776 233 8888876431 111112211 011111 1222221
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
.+..+.++++|+|+-+|+..+- .++-.+.++.|+.-.+.+++.+++. +.+.++.+-|
T Consensus 60 ------~~~~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvt 117 (144)
T d1mlda1 60 ------EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIIS 117 (144)
T ss_dssp ------GGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECS
T ss_pred ------CChHHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEec
Confidence 1466677999999999997543 3444568899999999999999987 5566666554
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.94 E-value=0.005 Score=56.12 Aligned_cols=116 Identities=11% Similarity=0.043 Sum_probs=72.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc--EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV--KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v--~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
|+|.|+||+|.+|..++..|+.+ +. ++.++++.+.-..++..-.++.. .. .....++....+--.
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~--~l~~el~L~D~~~~~~~~~g~a~Dl~~---------~~--~~~~~~~~~~~~~~~ 67 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKE--PFMKDLVLIGREHSINKLEGLREDIYD---------AL--AGTRSDANIYVESDE 67 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTC--TTCCEEEEEECGGGHHHHHHHHHHHHH---------HH--TTSCCCCEEEEEETT
T ss_pred CEEEEECCCChHHHHHHHHHHhC--CcccccccccchhhhHhhhcccccchh---------cc--cccccCCccccCCcc
Confidence 57999999999999999988887 43 88888875421111111111110 00 111233333222111
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEE
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFV 201 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV 201 (762)
++ +.++++|+||-+|+..+- .++-.+.++.|..-.+.+.+...+. ..+.++
T Consensus 68 ---------d~-~~l~~aDvVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~-~~~~ii 119 (145)
T d1hyea1 68 ---------NL-RIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEI-CDTKIF 119 (145)
T ss_dssp ---------CG-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CCCEEE
T ss_pred ---------hH-HHhccceEEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhcc-CCCeEE
Confidence 12 245789999999997653 4455678899999999999888776 334443
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=96.76 E-value=0.0086 Score=56.21 Aligned_cols=110 Identities=19% Similarity=0.174 Sum_probs=69.9
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcC-----CCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeE-E
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTC-----ENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVI-P 133 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~g-----p~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~-~ 133 (762)
+..+|.||||+|.+|.+++-.|++.. ..+.+.+++..+.. +.++.+. .+ + . .-...... .
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~----~~l~g~~----md-l---~--d~a~~~~~~~ 88 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSF----QALEGVA----ME-L---E--DSLYPLLREV 88 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGH----HHHHHHH----HH-H---H--TTTCTTEEEE
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcccc----chhcchh----hh-h---c--ccccccccCc
Confidence 45689999999999999999988641 12266666665422 2222110 00 0 0 00011111 1
Q ss_pred EEeecCCCCCCCCHHHHHhhcCCccEEEEcccccC-ccccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 134 INGDVAVPDLGISAEDRQMLSETIHIVYHIAATVR-FDDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 134 V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~-f~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
+.++ +..+.++++|+||-.|+..+ ..++..+.+..|+.-.+.+.+...+.
T Consensus 89 ~~~~-----------~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~ 139 (175)
T d7mdha1 89 SIGI-----------DPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAV 139 (175)
T ss_dssp EEES-----------CHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc-----------cchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 2221 23456689999999998765 45667789999999999999999885
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.0042 Score=56.66 Aligned_cols=106 Identities=12% Similarity=0.077 Sum_probs=67.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
|+|.|+||+|.+|++++-.|....+-. ++.+++..+. .+....++.. .........+.+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~---~~g~a~Dl~h-------------~~~~~~~~~~~~---- 60 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV---TPGVAVDLSH-------------IPTAVKIKGFSG---- 60 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT---HHHHHHHHHT-------------SCSSCEEEEECS----
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc---chhHHHHHHC-------------CccccCCcEEEc----
Confidence 689999999999999998776542334 7888876432 2221122211 011112222211
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccC-ccccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVR-FDDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~-f~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
.+ +++ .++++|+||-+|+..+ ..++-.+.+..|..-.+.+.+...+.
T Consensus 61 ~~------~~~-~~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~ 108 (145)
T d2cmda1 61 ED------ATP-ALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKT 108 (145)
T ss_dssp SC------CHH-HHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH
T ss_pred CC------Ccc-ccCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhh
Confidence 11 244 4579999999999764 33445568899999999999988876
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=96.70 E-value=0.0077 Score=54.61 Aligned_cols=113 Identities=12% Similarity=0.034 Sum_probs=72.6
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
+|.|+||+|.+|+.++..|+.++ -+ ++.+++.......++....++.. .. + ...+..+..+|..
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~-l~~el~L~Di~~~~~~~~g~a~Dl~~---------~~--~-~~~~~~i~~~~~~-- 66 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRD-IADEVVFVDIPDKEDDTVGQAADTNH---------GI--A-YDSNTRVRQGGYE-- 66 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CCSEEEEECCGGGHHHHHHHHHHHHH---------HH--T-TTCCCEEEECCGG--
T ss_pred eEEEECCCCcHHHHHHHHHHhCC-CCCEEEEEecCCcccccceeecchhh---------cc--c-ccCCceEeeCCHH--
Confidence 68999999999999999999882 23 78888764321111111111111 00 1 2344555555532
Q ss_pred CCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEE
Q psy7542 142 DLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVY 202 (762)
Q Consensus 142 ~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~ 202 (762)
. +.++|+|+-+|+..+- .++-.+.++.|..-.+.+.+..++. +.+.++-
T Consensus 67 ----------~-~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~-~p~~i~i 116 (142)
T d1o6za1 67 ----------D-TAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISL 116 (142)
T ss_dssp ----------G-GTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEE
T ss_pred ----------H-hhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhc-CCCceEE
Confidence 1 3689999999986653 3455678899999999999988886 3444433
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.63 E-value=0.0079 Score=54.75 Aligned_cols=116 Identities=12% Similarity=0.101 Sum_probs=70.9
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.++|.|.|+ |.+|..++..|+..+ -+ +|+++++.... ++....++... . . .........+|.
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~-~~~elvL~D~~~~~--~~g~a~Dl~~a---------~--~-~~~~~~~~~~d~ 67 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQG-IAEEFVIVDVVKDR--TKGDALDLEDA---------Q--A-FTAPKKIYSGEY 67 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSHHH--HHHHHHHHHGG---------G--G-GSCCCEEEECCG
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcC-CCcEEEEeecccch--hHHHHHHHhcc---------c--c-ccCCceEeeccH
Confidence 5678999995 999999999999982 23 89999885321 11111111110 0 1 123344555553
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
. . ++++|+|+-+|+...- ...-.+....|+.-.+.+.+...+. +.+.++.+-|
T Consensus 68 ~------------~-~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvt 121 (146)
T d1ez4a1 68 S------------D-CKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAA 121 (146)
T ss_dssp G------------G-GTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred H------------H-hccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeC
Confidence 2 2 4789999999987543 3344467788999999999888886 5555655544
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.24 E-value=0.02 Score=52.40 Aligned_cols=118 Identities=13% Similarity=0.086 Sum_probs=73.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+.++|.|.|| |.+|+.++..|... ++ ++.+++..+... +....++. ... ............+
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~--~~~el~L~D~~~~~~--~g~a~Dl~---------~~~--~~~~~~~~~~~~~- 68 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALR--ELADVVLYDVVKGMP--EGKALDLS---------HVT--SVVDTNVSVRAEY- 68 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHH--TCCEEEEECSSSSHH--HHHHHHHH---------HHH--HHTTCCCCEEEEC-
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhC--CCceEEEEEeccccc--hhHHHHHh---------hhc--cccCCeeEEeccC-
Confidence 5678999997 99999999887777 56 888887654321 11111111 000 1111122222111
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCccc------cHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRFDD------YMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~------~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
+++..++++|+|+-+|+..+... .-.+.+..|+.-.+.+++.+.+. +.+.++.+-|
T Consensus 69 ----------~~~~~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~-~p~aiviivs 130 (154)
T d1pzga1 69 ----------SYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKY-CPKTFIIVVT 130 (154)
T ss_dssp ----------SHHHHHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECC
T ss_pred ----------chhhhhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhc-CCCcEEEEeC
Confidence 34556789999999998764321 33457788999999999988887 4556665544
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.24 E-value=0.0051 Score=57.83 Aligned_cols=31 Identities=35% Similarity=0.544 Sum_probs=26.6
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEE
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYIL 93 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~L 93 (762)
++|.|.||||++|..|++-|..+ |+++|..+
T Consensus 2 ikVaIiGATGyvG~eLlrlL~~H-P~~ei~~l 32 (179)
T d2g17a1 2 LNTLIVGASGYAGAELVSYVNRH-PHMTITAL 32 (179)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHC-TTEEEEEE
T ss_pred cEEEEECcccHHHHHHHHHHHhC-CCCceEee
Confidence 58999999999999999988877 88866544
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.24 E-value=0.0049 Score=54.75 Aligned_cols=71 Identities=20% Similarity=0.193 Sum_probs=52.5
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|+|+|.|+ |.+|+.|++.|.+. ++.|.++.+.+ ++++++.+ .-.+.++.||.+++
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~--g~~v~vid~d~------~~~~~~~~----------------~~~~~vi~Gd~~~~ 55 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEK--GHDIVLIDIDK------DICKKASA----------------EIDALVINGDCTKI 55 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT--TCEEEEEESCH------HHHHHHHH----------------HCSSEEEESCTTSH
T ss_pred CEEEEECC-CHHHHHHHHHHHHC--CCCcceecCCh------hhhhhhhh----------------hhhhhhccCcccch
Confidence 68999997 99999999999988 67788887753 33433211 02567899999987
Q ss_pred CCCCCHHHHHhh-cCCccEEEEc
Q psy7542 142 DLGISAEDRQML-SETIHIVYHI 163 (762)
Q Consensus 142 ~LGLs~~~l~~l-~~~vDiViH~ 163 (762)
+ .+.++ ++++|.++-+
T Consensus 56 ~------~l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 56 K------TLEDAGIEDADMYIAV 72 (132)
T ss_dssp H------HHHHTTTTTCSEEEEC
T ss_pred h------hhhhcChhhhhhhccc
Confidence 6 46655 5678988854
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.13 E-value=0.0068 Score=55.52 Aligned_cols=75 Identities=19% Similarity=0.288 Sum_probs=50.6
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
++|+|+|.|| |++|+.+++.|.+. +++|++..|.. ++.+++.+ ..........+..
T Consensus 1 ~~K~IliiGa-G~~G~~~a~~L~~~--g~~V~v~dr~~------~~a~~l~~---------------~~~~~~~~~~~~~ 56 (182)
T d1e5qa1 1 ATKSVLMLGS-GFVTRPTLDVLTDS--GIKVTVACRTL------ESAKKLSA---------------GVQHSTPISLDVN 56 (182)
T ss_dssp CCCEEEEECC-STTHHHHHHHHHTT--TCEEEEEESCH------HHHHHHHT---------------TCTTEEEEECCTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhC--CCEEEEEECCh------HHHHHHHh---------------ccccccccccccc
Confidence 3689999986 99999999999988 67899999974 34444321 1233333434443
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcc
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIA 164 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~A 164 (762)
.. ......+...|.++.+.
T Consensus 57 ~~------~~~~~~i~~~~~~i~~~ 75 (182)
T d1e5qa1 57 DD------AALDAEVAKHDLVISLI 75 (182)
T ss_dssp CH------HHHHHHHTTSSEEEECS
T ss_pred ch------hhhHhhhhccceeEeec
Confidence 32 35666777888888654
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.08 E-value=0.055 Score=49.14 Aligned_cols=112 Identities=18% Similarity=0.161 Sum_probs=66.9
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCC-C--c-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCE-N--V-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN 135 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp-~--v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~ 135 (762)
+.++|.|+||+|++|++++-.|....- + . -...+.-.... .+.++.... + +. .........+.
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~---~~~~~~~~~----~-~~-----~~~~~~~~~~~ 69 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQA---MKALEGVVM----E-LE-----DCAFPLLAGLE 69 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGG---HHHHHHHHH----H-HH-----TTTCTTEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccc---hhhHcCchh----h-hh-----ccccccccccc
Confidence 356899999999999999999987611 1 1 11222222211 122221110 0 00 11112333333
Q ss_pred eecCCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 136 GDVAVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 136 GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
+.- +..+.++++|+||-+|+..+- .++-.+.+..|+.-.+.+.+...+.
T Consensus 70 ~~~----------~~~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~ 119 (154)
T d1y7ta1 70 ATD----------DPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEV 119 (154)
T ss_dssp EES----------CHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCC----------chhhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 321 234567899999999997653 4556678899999999999998884
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.97 E-value=0.021 Score=51.86 Aligned_cols=114 Identities=14% Similarity=0.084 Sum_probs=72.0
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
.+++|-|.|| |.+|+.++..|+..+ -+ +|.++++.+.. ++....++. ... ......+.+..+|.
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~-l~~el~L~Di~~~~--~~g~a~Dl~---------~~~--~~~~~~~~~~~~d~ 69 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQG-IADEIVLIDANESK--AIGDAMDFN---------HGK--VFAPKPVDIWHGDY 69 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSHHH--HHHHHHHHH---------HHT--TSSSSCCEEEECCG
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcC-CCceEEEEeecccc--ccchhccHh---------hCc--cccCCCeEEEECCH
Confidence 5678999996 999999999999983 23 88888875321 111111111 111 11223444545553
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEE
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVY 202 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~ 202 (762)
. .++++|+|+.+|+..+- .+.-.+.+..|+.-.+.+.+...+. ..+.++.
T Consensus 70 ~-------------~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~~i 120 (148)
T d1ldna1 70 D-------------DCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMAS-GFQGLFL 120 (148)
T ss_dssp G-------------GTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHH-TCCSEEE
T ss_pred H-------------HhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhh-CCCceEE
Confidence 2 35789999999987543 3333456788999888888887776 3344433
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.88 E-value=0.0099 Score=54.13 Aligned_cols=36 Identities=19% Similarity=0.428 Sum_probs=29.6
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc---EEEEEeCCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV---KIYILLRPKK 98 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v---~V~~LvR~~~ 98 (762)
|+|.|.||||++|+.+++.|++. +++ +++++.+++.
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~-~~~p~~~l~~~~ss~s 40 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEE-RDFDAIRPVFFSTSQL 40 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-TGGGGSEEEEEESSST
T ss_pred cEEEEECCccHHHHHHHHHHHhC-CCCCeeEEEEeecccc
Confidence 57999999999999999999976 332 8888877654
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.0078 Score=58.72 Aligned_cols=80 Identities=20% Similarity=0.187 Sum_probs=52.3
Q ss_pred cCCCEEEEECC----------------CChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhh
Q psy7542 59 LEHKNIFITGA----------------SGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQ 122 (762)
Q Consensus 59 ~~gk~VLVTGA----------------TGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~ 122 (762)
++|++||||+| ||-+|.+|++.+.++ |..|.++.-+....
T Consensus 4 l~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~--Ga~V~li~g~~~~~---------------------- 59 (223)
T d1u7za_ 4 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARR--GANVTLVSGPVSLP---------------------- 59 (223)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHT--TCEEEEEECSCCCC----------------------
T ss_pred cCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHc--CCchhhhhcccccC----------------------
Confidence 57888888865 899999999999999 66667766554321
Q ss_pred hcccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCcc
Q psy7542 123 SESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFD 170 (762)
Q Consensus 123 ~~~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~ 170 (762)
....+..+...-.+.- .+.+...+.++|++|++||...|.
T Consensus 60 ----~p~~~~~~~~~t~~~m----~~~~~~~~~~~D~~i~aAAvsDf~ 99 (223)
T d1u7za_ 60 ----TPPFVKRVDVMTALEM----EAAVNASVQQQNIFIGCAAVADYR 99 (223)
T ss_dssp ----CCTTEEEEECCSHHHH----HHHHHHHGGGCSEEEECCBCCSEE
T ss_pred ----cccccccceehhhHHH----HHHHHhhhccceeEeeeechhhhh
Confidence 1234444433211110 113344557899999999998774
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=95.85 E-value=0.034 Score=50.05 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=68.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
++|-|.|| |.+|+.++-.|+..+ -+ ++.++++......++ ..++... ...........+|.
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~-l~~el~L~D~~~~~~~g~--a~Dl~~~------------~~~~~~~~~~~~~~-- 63 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQ-TANELVLIDVFKEKAIGE--AMDINHG------------LPFMGQMSLYAGDY-- 63 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTT-CSSEEEEECCC---CCHH--HHHHTTS------------CCCTTCEEEC--CG--
T ss_pred CeEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeccCCcccee--eeeeccC------------cccCCCeeEeeCcH--
Confidence 46888897 999999999999883 34 899999876432221 1122110 11223444443432
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
+.++++|+|+-+|+...- .+.-.+.+..|+.-.+.+++...+. ..+.++.+
T Consensus 64 -----------~~~~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~-~p~ai~iv 115 (142)
T d1y6ja1 64 -----------SDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILV 115 (142)
T ss_dssp -----------GGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEE
T ss_pred -----------HHhCCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhcc-CCCceEEE
Confidence 235789999999986542 4455578889999999999988876 34444443
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.78 E-value=0.063 Score=48.05 Aligned_cols=114 Identities=17% Similarity=0.107 Sum_probs=73.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
|+|.|.|| |.+|+.++..|+.++ -+ ++.++++.+.. ++....++.. . .....+.....+|..
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~-l~~el~L~Di~~~~--~~g~~~Dl~~---------~---~~~~~~~~~~~~~~~- 63 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKG-FAREMVLIDVDKKR--AEGDALDLIH---------G---TPFTRRANIYAGDYA- 63 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSHHH--HHHHHHHHHH---------H---GGGSCCCEEEECCGG-
T ss_pred CEEEEECc-CHHHHHHHHHHHhCC-CCCEEEEEeccccc--ccchhccccc---------c---ccccccccccCCcHH-
Confidence 57899996 999999999898883 23 88888875321 1111111111 0 112344555544432
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
.++++|+|+-+|+..+. ...-.+.+..|..-.+.+.+...+. ..+.++.+-|
T Consensus 64 ------------~~~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~-~p~aivivvt 116 (140)
T d1a5za1 64 ------------DLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKY-APDSIVIVVT 116 (140)
T ss_dssp ------------GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred ------------HhcCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhc-CCCcEEEEeC
Confidence 24789999999987654 3445567888999889998888876 4455555533
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=95.77 E-value=0.024 Score=51.42 Aligned_cols=115 Identities=10% Similarity=0.052 Sum_probs=69.4
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
|+|-|+|| |.+|..++-.|+..+ -+ ++.++++.+.. ++..-.++. ... ...........+|..
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~-~~~elvL~Di~~~~--~~g~~~Dl~---------~a~--~~~~~~~~~~~~d~~- 65 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQG-VADDYVFIDANEAK--VKADQIDFQ---------DAM--ANLEAHGNIVINDWA- 65 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHT-CCSEEEEECSSHHH--HHHHHHHHH---------HHG--GGSSSCCEEEESCGG-
T ss_pred CeEEEECc-CHHHHHHHHHHHhcC-CCceEEEEecccch--hhhHHHhhh---------ccc--cccCCccceeccCHH-
Confidence 68999995 999999999999883 23 78888775321 111111111 111 122234444555532
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCcc-----ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFD-----DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~-----~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
.++++|+||-+|+..+.. ..-.+.++.|+.-.+.+.+..++. ..+.++.+-|
T Consensus 66 ------------~l~~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~-~p~aivivvt 122 (146)
T d1hyha1 66 ------------ALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVIS 122 (146)
T ss_dssp ------------GGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred ------------HhccccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEec
Confidence 247899999999965421 112245778999889988888876 4455554433
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=95.72 E-value=0.058 Score=48.32 Aligned_cols=113 Identities=13% Similarity=0.074 Sum_probs=71.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE-eecC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN-GDVA 139 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~-GDl~ 139 (762)
|+|.|+|| |.+|+.++..|+..+ -+ ++.++++.+....++ ..++.... .....+..+.. +|
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~-l~~el~L~Di~~~~~~~~--~~d~~~~~-----------~~~~~~~~i~~~~~-- 63 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQ-LARELVLLDVVEGIPQGK--ALDMYESG-----------PVGLFDTKVTGSND-- 63 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSSSSHHHHH--HHHHHTTH-----------HHHTCCCEEEEESC--
T ss_pred CEEEEECc-CHHHHHHHHHHHhCC-CCceEEEeccccccchhh--hhhhhccc-----------chhcccceEEecCC--
Confidence 57999996 999999999998872 23 889888765422111 11111111 11122333332 22
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccC-ccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVR-FDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~-f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
. +.++++|+|+-+|+..+ ..+.-.+....|..-.+.+.+...+. ..+.++.+
T Consensus 64 ----------~-~~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~-~p~aiviv 116 (142)
T d1guza1 64 ----------Y-ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKH-SKNPIIIV 116 (142)
T ss_dssp ----------G-GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CSSCEEEE
T ss_pred ----------H-HHhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhcc-CCCeEEEE
Confidence 1 23578999999998754 33444567888999999999888776 34455544
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=95.68 E-value=0.048 Score=49.15 Aligned_cols=112 Identities=13% Similarity=0.128 Sum_probs=71.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc--EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV--KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v--~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+|.|.|+ |.+|++++..|+.+ +. ++.++++.+.. ++....++... ..+........++
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~--~l~~ElvL~D~~~~~--~~g~a~Dl~~a------------~~~~~~~~i~~~~-- 62 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQR--GIAREIVLEDIAKER--VEAEVLDMQHG------------SSFYPTVSIDGSD-- 62 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT--TCCSEEEEECSSHHH--HHHHHHHHHHT------------GGGSTTCEEEEES--
T ss_pred CEEEEECC-CHHHHHHHHHHHhc--CCCcEEEEEEecccc--chhHHHHHHhc------------cccCCCceeecCC--
Confidence 46899996 99999999999988 44 88888875421 11111122111 1112223333232
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEE
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYV 203 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~v 203 (762)
+++ .++++|+|+-+|+..+- .+.-.+.+..|+.-.+.+.+..++. +.+.++.+
T Consensus 63 ---------~~~-~~~daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~-~p~ai~iv 116 (143)
T d1llda1 63 ---------DPE-ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYML 116 (143)
T ss_dssp ---------CGG-GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEE
T ss_pred ---------CHH-HhhCCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhh-CCCeEEEE
Confidence 122 35789999999998653 3555678899999999998888876 44444443
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.33 E-value=0.035 Score=50.54 Aligned_cols=111 Identities=12% Similarity=0.090 Sum_probs=65.3
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcC----CCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEE
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTC----ENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPI 134 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~g----p~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V 134 (762)
+.++|.|+||+|.+|++++-.|+... ... .+.+++..+. ++..+.+.. + .. .........+
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~----~~~~~~l~~----~---~~---~~~~~~~~~~ 67 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM----MGVLDGVLM----E---LQ---DCALPLLKDV 67 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG----HHHHHHHHH----H---HH---HTCCTTEEEE
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccc----hhhhhhhhh----h---hc---cccccccccc
Confidence 35689999999999999999887541 122 4555544322 222222100 0 00 0011122222
Q ss_pred EeecCCCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHc
Q psy7542 135 NGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQM 194 (762)
Q Consensus 135 ~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~ 194 (762)
.+ .. +..+.++++|+||-+|+..+- .++-.+.++.|..-.+.+.+...+.
T Consensus 68 ~~--~~--------~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~ 118 (154)
T d5mdha1 68 IA--TD--------KEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKY 118 (154)
T ss_dssp EE--ES--------CHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred cc--Cc--------ccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhh
Confidence 21 11 234567899999999987653 3444567889999999988887664
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.28 E-value=0.016 Score=54.61 Aligned_cols=40 Identities=23% Similarity=0.422 Sum_probs=30.7
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEe-CCCCCc
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILL-RPKKNK 100 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~Lv-R~~~~~ 100 (762)
+..+|.|.||||+.|..|++-|.+. |.++|..+. +...++
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~H-P~~ei~~l~S~~~aG~ 44 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANH-PQFRIKVMTADRKAGE 44 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTC-SSEEEEEEECSTTTTS
T ss_pred CccEEEEECcccHHHHHHHHHHHhC-CCceEEEEeccccCCC
Confidence 4568999999999999999988877 888665554 444443
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=94.94 E-value=0.028 Score=51.11 Aligned_cols=36 Identities=17% Similarity=0.390 Sum_probs=28.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHc--CCCcEEEEEeCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRT--CENVKIYILLRPK 97 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~--gp~v~V~~LvR~~ 97 (762)
|+|.|.||||++|..|++.|++. .|...+..+..+.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~ 38 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ 38 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSC
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccc
Confidence 57999999999999999999874 1333777766543
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=94.93 E-value=0.031 Score=52.18 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=57.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
.++++|+|.|+ |..|+.++..|.+. ++ +|++..|..... +|+..+. +++... ........|
T Consensus 16 l~~k~vlIlGa-GGaarai~~al~~~--g~~~i~i~nR~~~~~---~~~~~l~-----~~~~~~-------~~~~~~~~~ 77 (182)
T d1vi2a1 16 IKGKTMVLLGA-GGASTAIGAQGAIE--GLKEIKLFNRRDEFF---DKALAFA-----QRVNEN-------TDCVVTVTD 77 (182)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHT--TCSEEEEEECSSTTH---HHHHHHH-----HHHHHH-------SSCEEEEEE
T ss_pred cCCCEEEEECC-cHHHHHHHHHHhhc--CCceEeeeccchHHH---HHHHHHH-----HHHHhh-------cCcceEeee
Confidence 37899999995 88899999999998 67 899999976432 3443322 222211 123455667
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEcccc
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAAT 166 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA~ 166 (762)
+.+.. ++.....++|+||++...
T Consensus 78 ~~~~~------~~~~~~~~~diiIN~Tp~ 100 (182)
T d1vi2a1 78 LADQQ------AFAEALASADILTNGTKV 100 (182)
T ss_dssp TTCHH------HHHHHHHTCSEEEECSST
T ss_pred ccccc------chhhhhcccceeccccCC
Confidence 76643 667777889999999653
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=94.86 E-value=0.092 Score=48.16 Aligned_cols=114 Identities=12% Similarity=0.128 Sum_probs=72.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc--EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEe
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV--KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPING 136 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v--~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~G 136 (762)
...++|-|.|+ |.+|+.++-.|+.. +. ++.++++.+.. ++....++.... .........-.+
T Consensus 18 ~~~~KV~IIGa-G~VG~~~A~~l~~~--~l~~ElvLiD~~~~~--a~g~alDl~h~~-----------~~~~~~~~~~~~ 81 (160)
T d1i0za1 18 VPNNKITVVGV-GQVGMACAISILGK--SLADELALVDVLEDK--LKGEMMDLQHGS-----------LFLQTPKIVADK 81 (160)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHT--TCCSEEEEECSCHHH--HHHHHHHHHHTG-----------GGCCCSEEEECS
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhc--CCCcEEEEEEeccch--hHHHHHHHhccc-----------cccCCCeEEecc
Confidence 35679999996 99999999999998 44 88888875321 111112221110 111223333333
Q ss_pred ecCCCCCCCCHHHHHhhcCCccEEEEcccccCcc-ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEE
Q psy7542 137 DVAVPDLGISAEDRQMLSETIHIVYHIAATVRFD-DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVY 202 (762)
Q Consensus 137 Dl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~-~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~ 202 (762)
|.. .++++|+|+.+|+..+-. ++..+.+..|+.-.+.++...++. +.+.++.
T Consensus 82 d~~-------------~~~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiii 134 (160)
T d1i0za1 82 DYS-------------VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIII 134 (160)
T ss_dssp SGG-------------GGTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEE
T ss_pred chh-------------hcccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEE
Confidence 432 247899999999976533 444567788999999998888876 4444433
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.70 E-value=0.15 Score=45.67 Aligned_cols=115 Identities=16% Similarity=0.055 Sum_probs=71.2
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEE-eecC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPIN-GDVA 139 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~-GDl~ 139 (762)
|+|-|.|| |.+|+.++..|+.. .-+ ++.++++.+.. ++..-.++ +... +.......+.. +|.
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~-~~~~elvL~Di~~~~--~~g~alDl---------~~~~--~~~~~~~~i~~~~d~- 64 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLN-LDVDEIALVDIAEDL--AVGEAMDL---------AHAA--AGIDKYPKIVGGADY- 64 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHH-SCCSEEEEECSSHHH--HHHHHHHH---------HHHH--HTTTCCCEEEEESCG-
T ss_pred CEEEEECc-CHHHHHHHHHHHhc-CcCceEEEEecccch--hhHHHHHH---------hhhc--cccCCCCccccCCCH-
Confidence 67999996 99999999998887 244 88888875321 11111111 1110 11112223332 232
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccCc-cccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVRF-DDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~f-~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
+.++++|+|+-.|+..+- ...-.+....|..-.+.+.+..++. +...++.+-|
T Consensus 65 ------------~~~~~adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvt 118 (142)
T d1ojua1 65 ------------SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVT 118 (142)
T ss_dssp ------------GGGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECS
T ss_pred ------------HHhccccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEec
Confidence 245789999999986543 3455567888999999999988876 4455555444
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=94.69 E-value=0.019 Score=53.76 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=26.8
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEe
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILL 94 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~Lv 94 (762)
++|.|.||||++|..|++-|.+. |.++|..+.
T Consensus 2 ikVaIvGATGyvG~eLirlL~~H-P~~ei~~l~ 33 (176)
T d1vkna1 2 IRAGIIGATGYTGLELVRLLKNH-PEAKITYLS 33 (176)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHC-TTEEEEEEE
T ss_pred eEEEEECCCcHHHHHHHHHHHhC-CCceEEEee
Confidence 57999999999999999988776 888665554
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=94.63 E-value=0.087 Score=47.21 Aligned_cols=114 Identities=14% Similarity=0.142 Sum_probs=67.0
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEE-EeecC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPI-NGDVA 139 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V-~GDl~ 139 (762)
++|-|.|+ |.+|+.++-.|+.. ++ .+.+++..+... +....++.....+ ......+. .+|.
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~--~l~dl~l~D~~~~~~--~~~~~Dl~~~~~~-----------~~~~~~i~~~~d~- 64 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAK--ELGDIVLLDIVEGVP--QGKALDLYEASPI-----------EGFDVRVTGTNNY- 64 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHH--TCSEEEEECSSSSHH--HHHHHHHHTTHHH-----------HTCCCCEEEESCG-
T ss_pred CeEEEECC-CHHHHHHHHHHHhC--CcceEEEEeeccccc--hhHHHHhhccccc-----------cCCCCEEEecCcH-
Confidence 58999996 99999999988887 56 888888754321 1111122111111 11222222 2332
Q ss_pred CCCCCCCHHHHHhhcCCccEEEEcccccC-ccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 140 VPDLGISAEDRQMLSETIHIVYHIAATVR-FDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~~vDiViH~AA~v~-f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
+. ++++|+||-+|+... ......+.+..|+.-.+.+++...+. ..+.++.+-|
T Consensus 65 -----------~~-~~~advvvitag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~-~p~aivivvt 118 (142)
T d1uxja1 65 -----------AD-TANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPL-SPNAVIIMVN 118 (142)
T ss_dssp -----------GG-GTTCSEEEECCSCC---------CHHHHHHHHHHHHHHHGGG-CTTCEEEECS
T ss_pred -----------HH-hcCCCEEEEeeeccCCcCcchhHHHhHHHHHHHHHHHHHhcc-CCCceEEEeC
Confidence 22 478999999999764 33444567788998888988888875 4455555433
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=94.57 E-value=0.12 Score=45.09 Aligned_cols=70 Identities=11% Similarity=0.150 Sum_probs=49.3
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVP 141 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~ 141 (762)
|++.|.|+ |-+|+.+++.|.+. ++.|+++...+ ++++++. ......+.||.+++
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~--g~~vvvid~d~------~~~~~~~-----------------~~~~~~~~gd~~~~ 54 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRM--GHEVLAVDINE------EKVNAYA-----------------SYATHAVIANATEE 54 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHT--TCCCEEEESCH------HHHHHTT-----------------TTCSEEEECCTTCT
T ss_pred CEEEEECC-CHHHHHHHHHHHHC--CCeEEEecCcH------HHHHHHH-----------------HhCCcceeeecccc
Confidence 56788885 99999999999999 55567776642 4444431 12346788999998
Q ss_pred CCCCCHHHHHhh-cCCccEEEEc
Q psy7542 142 DLGISAEDRQML-SETIHIVYHI 163 (762)
Q Consensus 142 ~LGLs~~~l~~l-~~~vDiViH~ 163 (762)
+ .+.++ ++++|.||=+
T Consensus 55 ~------~l~~a~i~~a~~vi~~ 71 (134)
T d2hmva1 55 N------ELLSLGIRNFEYVIVA 71 (134)
T ss_dssp T------HHHHHTGGGCSEEEEC
T ss_pred h------hhhccCCccccEEEEE
Confidence 7 46555 6778887744
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.51 E-value=0.016 Score=53.00 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=30.3
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
|+|.|+||+|.+|+.|++.|++. +.+|.+..|.+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~--G~~V~l~~R~~ 34 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATL--GHEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT--TCEEEEEESSH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHC--CCEEEEEECCH
Confidence 67999999999999999999999 67788889864
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.78 E-value=0.074 Score=47.85 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=28.4
Q ss_pred CCEEEEECCCChhHHHHHHHHHHc-CCCcEEEEEeCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRT-CENVKIYILLRP 96 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~-gp~v~V~~LvR~ 96 (762)
.++|.|.||||++|..|++-|.++ .|.+++..+..+
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~ 38 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASA 38 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeec
Confidence 468999999999999999988754 355677776543
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=93.67 E-value=0.053 Score=49.69 Aligned_cols=74 Identities=19% Similarity=0.300 Sum_probs=51.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEee
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGD 137 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GD 137 (762)
+++++|||.|+ |-+|+.+++.|... ++ +|++..|.. +|.+++.+ + + ....+ +
T Consensus 22 l~~~~ilviGa-G~~g~~v~~~L~~~--g~~~i~v~nRt~------~ka~~l~~---------~-----~--~~~~~--~ 74 (159)
T d1gpja2 22 LHDKTVLVVGA-GEMGKTVAKSLVDR--GVRAVLVANRTY------ERAVELAR---------D-----L--GGEAV--R 74 (159)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHH--CCSEEEEECSSH------HHHHHHHH---------H-----H--TCEEC--C
T ss_pred cccCeEEEECC-CHHHHHHHHHHHhc--CCcEEEEEcCcH------HHHHHHHH---------h-----h--hcccc--c
Confidence 47899999997 99999999999998 77 789988863 23333221 0 0 11111 1
Q ss_pred cCCCCCCCCHHHHHhhcCCccEEEEcccccC
Q psy7542 138 VAVPDLGISAEDRQMLSETIHIVYHIAATVR 168 (762)
Q Consensus 138 l~~~~LGLs~~~l~~l~~~vDiViH~AA~v~ 168 (762)
+ +++...+.++|+||.|.+...
T Consensus 75 ~---------~~~~~~l~~~Divi~atss~~ 96 (159)
T d1gpja2 75 F---------DELVDHLARSDVVVSATAAPH 96 (159)
T ss_dssp G---------GGHHHHHHTCSEEEECCSSSS
T ss_pred c---------hhHHHHhccCCEEEEecCCCC
Confidence 1 257777889999999977544
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=93.38 E-value=0.3 Score=44.04 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=69.5
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAV 140 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~ 140 (762)
.+|-|.|+ |.+|+.++..|+.. ++ ++.++++.... ++....++.... .....+..+...+-
T Consensus 4 ~KI~IIGa-G~VG~~~a~~l~~~--~l~el~L~Di~~~~--~~g~a~Dl~~~~-----------~~~~~~~~v~~~~~-- 65 (150)
T d1t2da1 4 AKIVLVGS-GMIGGVMATLIVQK--NLGDVVLFDIVKNM--PHGKALDTSHTN-----------VMAYSNCKVSGSNT-- 65 (150)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT--TCCEEEEECSSSSH--HHHHHHHHHTHH-----------HHHTCCCCEEEECC--
T ss_pred CeEEEECC-CHHHHHHHHHHHhC--CCCeEEEEeccCCc--ceeeecchhhhc-----------cccCCCcEEEeccc--
Confidence 57999995 99999999866666 57 88888875432 111111221100 11112333333221
Q ss_pred CCCCCCHHHHHhhcCCccEEEEcccccCcc------ccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEe
Q psy7542 141 PDLGISAEDRQMLSETIHIVYHIAATVRFD------DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVS 204 (762)
Q Consensus 141 ~~LGLs~~~l~~l~~~vDiViH~AA~v~f~------~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vS 204 (762)
. +.++++|+|+-+|+..+.. ..-.+.+..|+.-.+.+.+..++. ..+.++.+-
T Consensus 66 ---------~-~~~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~-~p~aivivv 124 (150)
T d1t2da1 66 ---------Y-DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVV 124 (150)
T ss_dssp ---------G-GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEEC
T ss_pred ---------c-cccCCCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhc-CCCeEEEEe
Confidence 1 2347899999999975432 123456788999999999888876 445555543
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.29 E-value=0.13 Score=46.98 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=29.9
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
+|.+|||+||+|-+|...+.-+... +.+|++++++
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~ 62 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAY--GLKILGTAGT 62 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred CCCEEEEEecccccccccccccccc--Cccccccccc
Confidence 6889999999999999888766555 7889999875
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=92.92 E-value=0.076 Score=48.75 Aligned_cols=78 Identities=13% Similarity=0.137 Sum_probs=51.3
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.|.+|||+||+|.+|..++.-.... +.+|++.+++.. +.+.+.+ . ... + ..|..
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~------k~~~~~~---------l------Ga~-~--vi~~~ 81 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQ------KAQSALK---------A------GAW-Q--VINYR 81 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHH------HHHHHHH---------H------TCS-E--EEETT
T ss_pred CCCEEEEEccccccchHHHHHHHHh--CCeEeecccchH------HHHHHHh---------c------CCe-E--EEECC
Confidence 5789999999999999999876666 789999988642 2222111 0 111 1 23666
Q ss_pred CCCCCCCHHHHHhhcC--CccEEEEcccc
Q psy7542 140 VPDLGISAEDRQMLSE--TIHIVYHIAAT 166 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~--~vDiViH~AA~ 166 (762)
++++ .+.+.++.. .+|+|+.+++.
T Consensus 82 ~~d~---~~~v~~~t~g~g~d~v~d~~g~ 107 (179)
T d1qora2 82 EEDL---VERLKEITGGKKVRVVYDSVGR 107 (179)
T ss_dssp TSCH---HHHHHHHTTTCCEEEEEECSCG
T ss_pred CCCH---HHHHHHHhCCCCeEEEEeCccH
Confidence 6663 334555544 48999998864
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.79 E-value=0.11 Score=47.52 Aligned_cols=113 Identities=13% Similarity=0.047 Sum_probs=67.6
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
+..+|.|.|+ |.+|..++..|+..+ -+ ++.++++.... ++....++.... ...........+|.
T Consensus 18 ~~~KI~IIGa-G~VG~~~A~~l~~~~-l~~elvL~D~~~~~--a~g~alDl~~~~-----------~~~~~~~~~~~~d~ 82 (159)
T d2ldxa1 18 SRCKITVVGV-GDVGMACAISILLKG-LADELALVDADTDK--LRGEALDLQHGS-----------LFLSTPKIVFGKDY 82 (159)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTT-SCSEEEEECSCHHH--HHHHHHHHHHTT-----------TTCSCCEEEEESSG
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCchh--hhccHHHHhCcc-----------hhcCCCeEEeccch
Confidence 4568999995 999999999998883 23 88888875321 111112221110 11122333333332
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCcc-ccHHHHHHHhHHHHHHHHHHHHHcCCccEEE
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRFD-DYMQTYVFLNTRGTRDMLNLSKQMIHLQLFV 201 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~-~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV 201 (762)
+ .+.++|+|+-+|+..+.. +.-.+.++.|+.-.+.+....++. +.+.++
T Consensus 83 ------------~-~~~~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~-~p~~iv 132 (159)
T d2ldxa1 83 ------------N-VSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQN-SPDCKI 132 (159)
T ss_dssp ------------G-GGTTEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHH-STTCEE
T ss_pred ------------h-hhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhcc-CCCeEE
Confidence 2 247899999999876532 333346778888888888777665 334443
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=92.76 E-value=0.071 Score=49.04 Aligned_cols=36 Identities=8% Similarity=0.230 Sum_probs=30.7
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
+|.+|||+||+|-+|...+.-+... +.+|++.++++
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~ 62 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRP 62 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSG
T ss_pred CCCEEEEEeccccchhhhhhhhccc--ccccccccccc
Confidence 6889999999999999998766665 78899998864
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=92.72 E-value=0.11 Score=48.13 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=30.8
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
+|.+|||+||+|.+|...+.-.... +.+|++.+|++
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~ 64 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSD 64 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSH
T ss_pred CCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCH
Confidence 6899999999999999998766555 78999999863
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=92.59 E-value=0.05 Score=43.78 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=31.0
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKK 98 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~ 98 (762)
++.+|||+||+|-+|...+.-+... +.+|++..++++
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~--G~~Vi~~t~s~~ 67 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRES 67 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGG
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHc--CCeEEEEECCHH
Confidence 5789999999999999999865555 778999988754
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.47 E-value=0.056 Score=49.87 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=30.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
+|.+|||+||+|-+|...+.-+... +.+|++.+++.
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~ 60 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSD 60 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSH
T ss_pred CCCEEEEECCCCCcccccchhhccc--cccceeeeccc
Confidence 5789999999999999998866665 77888888753
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=92.11 E-value=1.2 Score=37.29 Aligned_cols=95 Identities=11% Similarity=0.141 Sum_probs=60.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
++||+|+|.| +|-+|..-++.|++. +.+|++...... +.+.++.+ ..+++++..+.
T Consensus 10 l~~k~vlVvG-~G~va~~ka~~ll~~--ga~v~v~~~~~~-----~~~~~~~~----------------~~~i~~~~~~~ 65 (113)
T d1pjqa1 10 LRDRDCLIVG-GGDVAERKARLLLEA--GARLTVNALTFI-----PQFTVWAN----------------EGMLTLVEGPF 65 (113)
T ss_dssp CBTCEEEEEC-CSHHHHHHHHHHHHT--TBEEEEEESSCC-----HHHHHHHT----------------TTSCEEEESSC
T ss_pred eCCCEEEEEC-CCHHHHHHHHHHHHC--CCeEEEEeccCC-----hHHHHHHh----------------cCCceeeccCC
Confidence 4799999999 699999999999999 666676665432 12222211 24677777766
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeC
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVST 205 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSS 205 (762)
.+.+ +.+++.|+-+... .. . ...+.+.|++. + .+|.+..
T Consensus 66 ~~~d-----------l~~~~lv~~at~d----~~------~----n~~i~~~a~~~-~--ilVNv~D 104 (113)
T d1pjqa1 66 DETL-----------LDSCWLAIAATDD----DT------V----NQRVSDAAESR-R--IFCNVVD 104 (113)
T ss_dssp CGGG-----------GTTCSEEEECCSC----HH------H----HHHHHHHHHHT-T--CEEEETT
T ss_pred CHHH-----------hCCCcEEeecCCC----HH------H----HHHHHHHHHHc-C--CEEEeCC
Confidence 5443 3678888855321 11 1 23577788876 2 4566554
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.77 E-value=0.1 Score=48.50 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=31.5
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKN 99 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~ 99 (762)
+|.+|||+||+|-+|...+.-.... +.+|++..++++.
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k 68 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAE 68 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTC
T ss_pred CCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHH
Confidence 5789999999999999998765555 7888999987654
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=91.15 E-value=0.25 Score=40.43 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=30.3
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKK 98 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~ 98 (762)
++||+|+|.|. |-.|..+++.|.+. +.+|++.+....
T Consensus 3 ~~~K~v~ViGl-G~sG~s~a~~L~~~--g~~v~~~D~~~~ 39 (93)
T d2jfga1 3 YQGKNVVIIGL-GLTGLSCVDFFLAR--GVTPRVMDTRMT 39 (93)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHT--TCCCEEEESSSS
T ss_pred cCCCEEEEEeE-CHHHHHHHHHHHHC--CCEEEEeeCCcC
Confidence 68999999997 77899999999888 666677776544
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.14 E-value=0.77 Score=40.03 Aligned_cols=94 Identities=16% Similarity=0.209 Sum_probs=61.3
Q ss_pred hccCCCEEEEECCC---ChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEE
Q psy7542 57 ATLEHKNIFITGAS---GFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIP 133 (762)
Q Consensus 57 ~~~~gk~VLVTGAT---GFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~ 133 (762)
.+++.++|.|.||| |-.|..+++.|.+.+ ..+||.+....+.
T Consensus 4 ~lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~~~---------------------------------- 48 (129)
T d2csua1 4 YFFNPKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEEE---------------------------------- 48 (129)
T ss_dssp TTTSCSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCSE----------------------------------
T ss_pred HhCCCCeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCccc----------------------------------
Confidence 36788999999999 999999999987653 3488887653211
Q ss_pred EEeecCCCCCCCCHHHHHhhcCCccEEEEcccccCccccHHHHHHHhHHHHHHHHHHHHHcCCccEEEEEeCCcc
Q psy7542 134 INGDVAVPDLGISAEDRQMLSETIHIVYHIAATVRFDDYMQTYVFLNTRGTRDMLNLSKQMIHLQLFVYVSTAYC 208 (762)
Q Consensus 134 V~GDl~~~~LGLs~~~l~~l~~~vDiViH~AA~v~f~~~l~~~~~~NV~GT~~LLelA~~~~~lk~fV~vSSay~ 208 (762)
+.|--.-++ +.++-..+|.++=+... ..+..+++.|.+. +++.++.+|+.+.
T Consensus 49 i~G~~~y~s-------l~dlp~~vDlvvi~vp~---------------~~~~~~~~~~~~~-g~~~~vi~s~Gf~ 100 (129)
T d2csua1 49 VQGVKAYKS-------VKDIPDEIDLAIIVVPK---------------RFVKDTLIQCGEK-GVKGVVIITAGFG 100 (129)
T ss_dssp ETTEECBSS-------TTSCSSCCSEEEECSCH---------------HHHHHHHHHHHHH-TCCEEEECCCSST
T ss_pred cCCeEeecc-------hhhcCCCCceEEEecCh---------------HHhHHHHHHHHHc-CCCEEEEeccccc
Confidence 112111122 33344578888855321 1234677777776 7888888888765
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=90.49 E-value=0.52 Score=42.47 Aligned_cols=36 Identities=22% Similarity=0.387 Sum_probs=29.9
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKK 98 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~ 98 (762)
|+|.|.|+||.||+..++-+.+. |+- +|++|.=.+.
T Consensus 2 K~I~IlGsTGSIG~~tL~Vi~~~-~d~f~v~~Lsa~~N 38 (151)
T d1q0qa2 2 KQLTILGSTGSIGCSTLDVVRHN-PEHFRVVALVAGKN 38 (151)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHC-TTTEEEEEEEESSC
T ss_pred CeEEEEcCCcHHHHHHHHHHHhC-CCCcEEEEEEecCc
Confidence 67999999999999999877665 665 9999986543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.66 E-value=0.63 Score=42.00 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=28.5
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKK 98 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~ 98 (762)
.|.+|+|.|+ |.+|...+.-+... +.+|++++++..
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~--G~~vi~~~~~~~ 62 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAM--GAETYVISRSSR 62 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHH--TCEEEEEESSST
T ss_pred CCCEEEEECC-CCcchhHHHHhhhc--cccccccccchh
Confidence 6889999996 99998877655454 788999988654
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=89.51 E-value=0.39 Score=43.72 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=31.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
.+||+|+|.|| |..++.++..|.+. +++|+++.|..
T Consensus 16 ~~~k~vlIlGa-GGaarai~~al~~~--g~~i~I~nRt~ 51 (170)
T d1nyta1 16 RPGLRILLIGA-GGASRGVLLPLLSL--DCAVTITNRTV 51 (170)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHT--TCEEEEECSSH
T ss_pred CCCCEEEEECC-cHHHHHHHHHhccc--ceEEEeccchH
Confidence 37899999995 77899999999988 67899999974
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=89.39 E-value=0.16 Score=46.48 Aligned_cols=36 Identities=31% Similarity=0.442 Sum_probs=28.3
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEE-EeCCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYI-LLRPK 97 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~-LvR~~ 97 (762)
..+|.|.|++|=+|+.+++.+++. +++++.. +.|..
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~-~~~~lv~~~~~~~ 40 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALAL-EGVQLGAALEREG 40 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHS-TTEECCCEECCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEeccc
Confidence 468999999999999999999987 5775544 44443
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=89.10 E-value=0.51 Score=42.39 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=24.9
Q ss_pred CEEEEECCCChhHHHHHHHHHHcC-CCcEEEEEeC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTC-ENVKIYILLR 95 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~g-p~v~V~~LvR 95 (762)
=+|.|.||||++|..|++-|.++. |..++..+.-
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s 36 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLAS 36 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecc
Confidence 379999999999999997665542 2337766653
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.46 E-value=0.2 Score=52.99 Aligned_cols=96 Identities=17% Similarity=0.207 Sum_probs=57.4
Q ss_pred hhhhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCCCcchHHHHHHHhc---------ChhHHHHHhhh
Q psy7542 53 DRISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKKNKNSRERLEEIFQ---------SPLYEALKKEQ 122 (762)
Q Consensus 53 ~~i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~~~~~~eRl~~ll~---------~~~f~~l~~~~ 122 (762)
..++..+++.+|||.|+ |.+|+.++..|... |+ +|.+++...-..+...|.- ++. ...-++++...
T Consensus 29 e~~~~~l~~~kVlvvG~-GglG~ei~k~L~~~--Gvg~i~lvD~D~Ve~sNL~RQf-lf~~~diG~~Ka~~a~~~l~~~n 104 (426)
T d1yovb1 29 ESLQFLLDTCKVLVIGA-GGLGCELLKNLALS--GFRQIHVIDMDTIDVSNLNRQF-LFRPKDIGRPKAEVAAEFLNDRV 104 (426)
T ss_dssp SHHHHHHHHCCEEEECS-STTHHHHHHHHHTT--TCCCEEEECCCBCCGGGGGTCT-TCCGGGTTSBHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCeEEEECC-CHHHHHHHHHHHHc--CCCeEEEEECCCcchhhhcccc-cCChhHcCcHHHHHHHHHHHhhC
Confidence 44555577889999997 55999999999998 77 7887776432222111100 000 00111222211
Q ss_pred hcccccCCeEEEEeecCCCCCCCCHHHHHhhcCCccEEEEcc
Q psy7542 123 SESAIFEKVIPINGDVAVPDLGISAEDRQMLSETIHIVYHIA 164 (762)
Q Consensus 123 ~~~~~~~kV~~V~GDl~~~~LGLs~~~l~~l~~~vDiViH~A 164 (762)
..-+|..+..++.+.. ..++++.|+||.+.
T Consensus 105 ----p~v~i~~~~~~i~~~~--------~~~~~~~DlVi~~~ 134 (426)
T d1yovb1 105 ----PNCNVVPHFNKIQDFN--------DTFYRQFHIIVCGL 134 (426)
T ss_dssp ----TTCCCEEECSCGGGBC--------HHHHTTCSEEEECC
T ss_pred ----CCCceEeeeccccchH--------HHHHHhcchheecc
Confidence 2346777777776543 34678899999764
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=88.39 E-value=0.77 Score=41.64 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=26.9
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
+..+|.|.| +|.+|+..++.|.+. +++++.++...
T Consensus 2 ~kirvgiiG-~G~ig~~~~~~l~~~-~~~elvav~~~ 36 (170)
T d1f06a1 2 TNIRVAIVG-YGNLGRSVEKLIAKQ-PDMDLVGIFSR 36 (170)
T ss_dssp CCEEEEEEC-CSHHHHHHHHHHTTC-SSEEEEEEEES
T ss_pred CcceEEEEC-ChHHHHHHHHHHHhC-CCcEEEEEEec
Confidence 456899998 699999999888765 78866655543
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=88.09 E-value=0.23 Score=45.50 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=30.7
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKN 99 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~ 99 (762)
++.+|||+||+|-+|...+.-.... +.+|++.+|+...
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~--Ga~Viat~~s~~k 60 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREA 60 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSST
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHc--CCceEEEecCHHH
Confidence 4567999999999999999655555 7889999997643
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=88.04 E-value=0.29 Score=43.70 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=30.9
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKN 99 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~ 99 (762)
|+|+|.|+ |-+|+.+...|.+. ++.|.++.|....
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~--G~~V~~~~r~~~~ 35 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQ--GHEVQGWLRVPQP 35 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT--TCEEEEECSSCCS
T ss_pred CEEEEECc-CHHHHHHHHHHHHC--CCceEEEEcCHHH
Confidence 68999997 99999999999998 6788999997653
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=87.86 E-value=0.33 Score=43.20 Aligned_cols=37 Identities=11% Similarity=0.214 Sum_probs=33.3
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
+||+|+|.| .|+.|-.++..|.+.+++++|+++.+..
T Consensus 1 ~gkrivIvG-gG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVG-GGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEEC-ccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 489999999 6999999999999998888999998765
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.51 E-value=0.63 Score=39.56 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=49.0
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVA 139 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~ 139 (762)
.+.+|.|.| +|.||+-|+....+. |+++++++..+... ...---..+.+|..
T Consensus 10 ~~~kigIlG-gGQL~rMla~aA~~l--G~~v~v~d~~~~~P-------------------------A~~va~~~i~~~~~ 61 (111)
T d1kjqa2 10 AATRVMLLG-SGELGKEVAIECQRL--GVEVIAVDRYADAP-------------------------AMHVAHRSHVINML 61 (111)
T ss_dssp TCCEEEEES-CSHHHHHHHHHHHTT--TCEEEEEESSTTCG-------------------------GGGGSSEEEECCTT
T ss_pred CCCEEEEEe-CCHHHHHHHHHHHHC--CCEEEEEcCCCCCc-------------------------hhhcCCeEEECCCC
Confidence 346899999 799999999998887 88899998876532 11112256778988
Q ss_pred CCCCCCCHHHHHhhcC--CccEEE
Q psy7542 140 VPDLGISAEDRQMLSE--TIHIVY 161 (762)
Q Consensus 140 ~~~LGLs~~~l~~l~~--~vDiVi 161 (762)
|.+ .+.++.. .+|+|-
T Consensus 62 d~~------~l~~~~~~~~~DviT 79 (111)
T d1kjqa2 62 DGD------ALRRVVELEKPHYIV 79 (111)
T ss_dssp CHH------HHHHHHHHHCCSEEE
T ss_pred CHH------HHHHHHHhhCCceEE
Confidence 765 5666553 578884
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=87.17 E-value=0.46 Score=45.82 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=33.2
Q ss_pred hhhccCCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCC
Q psy7542 55 ISATLEHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPK 97 (762)
Q Consensus 55 i~~~~~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~ 97 (762)
-++-+++++|+|.| .|.+|++++..|.+. |+ ++.+++...
T Consensus 24 ~Q~kL~~~~VliiG-~GglGs~va~~La~~--Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 24 GQEALKDSRVLIVG-LGGLGCAASQYLASA--GVGNLTLLDFDT 64 (247)
T ss_dssp HHHHHHHCEEEEEC-CSHHHHHHHHHHHHH--TCSEEEEECCCB
T ss_pred HHHHHhCCCEEEEC-CCHHHHHHHHHHHHc--CCCeEEEECCcc
Confidence 34557889999999 677999999999999 88 888887543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=87.17 E-value=0.52 Score=42.57 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=29.5
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
.|+|.|.|| |-+|..++..|.+. |+.|.+..|.+
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~--G~~V~~~~r~~ 34 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALK--GQSVLAWDIDA 34 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHC--CCEEEEEECCH
Confidence 378999995 99999999999998 67888888853
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=86.57 E-value=0.68 Score=41.01 Aligned_cols=74 Identities=8% Similarity=0.144 Sum_probs=50.7
Q ss_pred EEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeecCCCC
Q psy7542 63 NIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDVAVPD 142 (762)
Q Consensus 63 ~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl~~~~ 142 (762)
.|+|.|. |-+|..++++|.+. +..|+++...+. ...+++++. ...++.++.||.++++
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~--~~~v~vId~d~~--~~~~~~~~~-----------------~~~~~~vi~Gd~~d~~ 62 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQR--GQNVTVISNLPE--DDIKQLEQR-----------------LGDNADVIPGDSNDSS 62 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHT--TCCEEEEECCCH--HHHHHHHHH-----------------HCTTCEEEESCTTSHH
T ss_pred EEEEECC-CHHHHHHHHHHHHc--CCCEEEEeccch--hHHHHHHHh-----------------hcCCcEEEEccCcchH
Confidence 5888886 89999999999998 566677766432 112222222 1357899999999876
Q ss_pred CCCCHHHHHhh-cCCccEEEEcc
Q psy7542 143 LGISAEDRQML-SETIHIVYHIA 164 (762)
Q Consensus 143 LGLs~~~l~~l-~~~vDiViH~A 164 (762)
.++++ +++++.||=+.
T Consensus 63 ------~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 63 ------VLKKAGIDRCRAILALS 79 (153)
T ss_dssp ------HHHHHTTTTCSEEEECS
T ss_pred ------HHHHhccccCCEEEEcc
Confidence 45443 56788888553
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=86.28 E-value=0.89 Score=41.40 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=29.7
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
.++++|+|.|| |..|+.++..|.+. ..+|+++.|..
T Consensus 16 ~~~k~vlIlGa-GGaarai~~aL~~~--~~~i~I~nR~~ 51 (171)
T d1p77a1 16 RPNQHVLILGA-GGATKGVLLPLLQA--QQNIVLANRTF 51 (171)
T ss_dssp CTTCEEEEECC-SHHHHTTHHHHHHT--TCEEEEEESSH
T ss_pred CCCCEEEEECC-cHHHHHHHHHHccc--CceeeeccchH
Confidence 37899999995 77799999999875 34899999974
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=86.09 E-value=0.88 Score=41.43 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=28.8
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPK 97 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~ 97 (762)
.|.+|||+|| |-+|...+.-+... +. +|++..+.+
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~--Ga~~Vi~~~~~~ 63 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSL--GAENVIVIAGSP 63 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHT--TBSEEEEEESCH
T ss_pred CCCEEEEECC-Cccchhheeccccc--cccccccccccc
Confidence 6889999996 89998888777666 77 899998853
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=86.06 E-value=0.29 Score=43.56 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=30.5
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
.-++|.|.||+|.+|+.+++.|.+. ++.|.+.+|..
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~--G~~V~~~d~~~ 43 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRAS--GYPISILDRED 43 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTT--TCCEEEECTTC
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHc--CCCcEeccccc
Confidence 4478999999999999999999998 56667777764
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.02 E-value=1.2 Score=41.48 Aligned_cols=32 Identities=22% Similarity=0.193 Sum_probs=27.6
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRP 96 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~ 96 (762)
|+|.|.| .|++|..++..|.+. +++|++.+..
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~--g~~V~g~D~n 32 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSAR--GHEVIGVDVS 32 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHT--TCEEEEECSC
T ss_pred CEEEEEC-CCHhHHHHHHHHHhC--CCcEEEEeCC
Confidence 6799996 899999999999998 6778888864
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.78 E-value=0.61 Score=42.98 Aligned_cols=34 Identities=12% Similarity=0.182 Sum_probs=25.3
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRP 96 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~ 96 (762)
+.+|||+||+|-+|...++-.... +. +|+...++
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~--Ga~~vi~~~~~ 65 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLL--GCSRVVGICGT 65 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHT--TCSEEEEEESS
T ss_pred CCEEEEECCCchhhHHHHHHHHHc--CCcceecccch
Confidence 378999999999999998765545 66 55555543
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=85.76 E-value=1.1 Score=41.41 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=31.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKK 98 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~ 98 (762)
..+++|.|.| .|.||+.+++.|..- +.+|+..++..+
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~f--g~~v~~~d~~~~ 78 (188)
T d1sc6a1 42 ARGKKLGIIG-YGHIGTQLGILAESL--GMYVYFYDIENK 78 (188)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHT--TCEEEEECSSCC
T ss_pred ccceEEEEee-cccchhhhhhhcccc--cceEeecccccc
Confidence 5789999997 899999999977655 889999988654
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=85.75 E-value=0.86 Score=39.68 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=22.1
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEE
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIY 91 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~ 91 (762)
|+|.|.|++|=+|+.|.+.+.++ +.++.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~--~~~l~ 28 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEK--GHELV 28 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT--TCEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcC--CCeEE
Confidence 57999999999999988766665 55443
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.54 E-value=0.16 Score=47.69 Aligned_cols=34 Identities=15% Similarity=0.334 Sum_probs=29.8
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKK 98 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~ 98 (762)
++|.|.|| |.+|+.++..+++. |++|.+.++...
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~--G~~V~l~D~~~~ 38 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAAT--GHTVVLVDQTED 38 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHT--TCEEEEECSCHH
T ss_pred EEEEEECc-CHHHHHHHHHHHhC--CCcEEEEECChH
Confidence 68999996 99999999999988 788899988753
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=85.37 E-value=0.82 Score=41.14 Aligned_cols=35 Identities=11% Similarity=0.182 Sum_probs=26.8
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
.|.+|+|.|+ |-+|...+.-+... +.++++.++..
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~--Ga~~i~~~~~~ 64 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAM--GAHVVAFTTSE 64 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHT--TCEEEEEESSG
T ss_pred CCCEEEEecc-chHHHHHHHHhhcc--cccchhhccch
Confidence 6889999986 88998887555544 77777787754
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=84.95 E-value=1.6 Score=40.68 Aligned_cols=94 Identities=9% Similarity=0.060 Sum_probs=57.1
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
..|++|.|.| .|-||+.+++.|..- +.+|+..+|..+.... ... ......-++.+- ....+..+...+
T Consensus 47 L~gktvgIiG-~G~IG~~va~~l~~f--g~~v~~~d~~~~~~~~-~~~-~~~~~~~l~~ll-------~~sD~i~~~~pl 114 (193)
T d1mx3a1 47 IRGETLGIIG-LGRVGQAVALRAKAF--GFNVLFYDPYLSDGVE-RAL-GLQRVSTLQDLL-------FHSDCVTLHCGL 114 (193)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTT--TCEEEEECTTSCTTHH-HHH-TCEECSSHHHHH-------HHCSEEEECCCC
T ss_pred eeCceEEEec-cccccccceeeeecc--ccceeeccCcccccch-hhh-ccccccchhhcc-------ccCCEEEEeecc
Confidence 5899999998 899999999888654 8899988886543211 110 000000111111 124567777777
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIA 164 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~A 164 (762)
++..-+|-..+.-..++.--++|+.|
T Consensus 115 t~~T~~li~~~~l~~mk~~a~lIN~s 140 (193)
T d1mx3a1 115 NEHNHHLINDFTVKQMRQGAFLVNTA 140 (193)
T ss_dssp CTTCTTSBSHHHHTTSCTTEEEEECS
T ss_pred cccchhhhhHHHHhccCCCCeEEecC
Confidence 77766665555545555556666665
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=84.90 E-value=1.1 Score=41.23 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=31.9
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKK 98 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~ 98 (762)
+.|++|.|.| .|-||+.+++.|..- +.+|+...|..+
T Consensus 40 l~gk~vgIiG-~G~IG~~va~~l~~~--g~~v~~~d~~~~ 76 (181)
T d1qp8a1 40 IQGEKVAVLG-LGEIGTRVGKILAAL--GAQVRGFSRTPK 76 (181)
T ss_dssp CTTCEEEEES-CSTHHHHHHHHHHHT--TCEEEEECSSCC
T ss_pred ccCceEEEec-cccccccceeeeecc--cccccccccccc
Confidence 6899999999 788999999888766 788999988654
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=83.79 E-value=0.89 Score=40.80 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=29.3
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRP 96 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~ 96 (762)
.|.+|+|+||+|-+|...+..+... +. +|++..+.
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~--g~~~V~~~~~~ 62 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAV--SGATIIGVDVR 62 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHH--TCCEEEEEESS
T ss_pred CCCEEEEEeccccceeeeeeccccc--ccccccccccc
Confidence 5789999999999998888877776 54 88888875
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=83.34 E-value=0.52 Score=42.42 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=30.6
Q ss_pred CCEEEEECCCChhHHHHHHHHHHcCCCc-EEEEEeCCCC
Q psy7542 61 HKNIFITGASGFVGKVLLEKILRTCENV-KIYILLRPKK 98 (762)
Q Consensus 61 gk~VLVTGATGFLG~~LvekLL~~gp~v-~V~~LvR~~~ 98 (762)
.|+|.|.|+||.||+..++-+.+. |+- +|.+|.=.+.
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~-~d~f~v~~lsa~~N 39 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERN-LDRYQVIALTANRN 39 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHT-GGGEEEEEEEESSC
T ss_pred CcEEEEECCCcHHHHHHHHHHHcC-CCCcEEEEEEeCCC
Confidence 579999999999999999877665 654 9999986543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=83.18 E-value=1.1 Score=40.08 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=27.6
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
.|.+|+|+| +|-+|...+.-+... +.+|++..+..
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~--Ga~vi~v~~~~ 60 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAY--GAFVVCTARSP 60 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHT--TCEEEEEESCH
T ss_pred CCCEEEEEc-ccccchhhHhhHhhh--cccccccchHH
Confidence 578999997 689999987655544 77999998753
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=82.96 E-value=0.44 Score=43.94 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=30.4
Q ss_pred CCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCC
Q psy7542 60 EHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKN 99 (762)
Q Consensus 60 ~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~ 99 (762)
++.+|||+||+|-+|...++-.... +.+|++.+|+...
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~--Ga~Via~~~~~~k 68 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGREST 68 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGG
T ss_pred CCCcEEEEEccccchHHHHHHHHHc--CCCeEEEecchhH
Confidence 3458999999999999988655555 8889999997543
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=81.92 E-value=3.2 Score=38.01 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=57.4
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCCCcchHHHHHHHhcChhHHHHHhhhhcccccCCeEEEEeec
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKKNKNSRERLEEIFQSPLYEALKKEQSESAIFEKVIPINGDV 138 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~~~~~~eRl~~ll~~~~f~~l~~~~~~~~~~~kV~~V~GDl 138 (762)
..+++|.|.| .|-||+.+++.|..- +.+|+..+|........... ......-.+.+. ....+..+...+
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~f--g~~v~~~d~~~~~~~~~~~~-~~~~~~~l~~~l-------~~sD~v~~~~pl 110 (188)
T d2naca1 42 LEAMHVGTVA-AGRIGLAVLRRLAPF--DVHLHYTDRHRLPESVEKEL-NLTWHATREDMY-------PVCDVVTLNCPL 110 (188)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHGGG--TCEEEEECSSCCCHHHHHHH-TCEECSSHHHHG-------GGCSEEEECSCC
T ss_pred ccccceeecc-ccccchhhhhhhhcc--CceEEEEeeccccccccccc-cccccCCHHHHH-------Hhccchhhcccc
Confidence 4789999999 899999999988765 77899999876543221110 000110111111 125667777777
Q ss_pred CCCCCCCCHHHHHhhcCCccEEEEcc
Q psy7542 139 AVPDLGISAEDRQMLSETIHIVYHIA 164 (762)
Q Consensus 139 ~~~~LGLs~~~l~~l~~~vDiViH~A 164 (762)
++..-++=.++.-..+++-.++|++|
T Consensus 111 t~~T~~li~~~~l~~mk~ga~lIN~a 136 (188)
T d2naca1 111 HPETEHMINDETLKLFKRGAYIVNTA 136 (188)
T ss_dssp CTTTTTCBSHHHHTTSCTTEEEEECS
T ss_pred cccchhhhHHHHHHhCCCCCEEEecC
Confidence 77665554444444455556777765
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=81.69 E-value=0.97 Score=41.23 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=29.6
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLR 95 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR 95 (762)
+.||+|+|.|.+..+|+-|...|.+. +.+|++...
T Consensus 35 l~GK~v~VIGrS~~VG~Pla~lL~~~--gatVt~~h~ 69 (166)
T d1b0aa1 35 TFGLNAVVIGASNIVGRPMSMELLLA--GCTTTVTHR 69 (166)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTT--TCEEEEECS
T ss_pred cccceEEEEeccccccHHHHHHHHHh--hcccccccc
Confidence 57999999999999999999888877 667766544
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=81.47 E-value=2.3 Score=39.59 Aligned_cols=37 Identities=14% Similarity=0.288 Sum_probs=31.2
Q ss_pred cCCCEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCCC
Q psy7542 59 LEHKNIFITGASGFVGKVLLEKILRTCENVKIYILLRPKK 98 (762)
Q Consensus 59 ~~gk~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~~ 98 (762)
+.|++|.|.| .|-||+.+++.|..- +.+|++.++..+
T Consensus 41 l~gk~vgIiG-~G~IG~~va~~l~~f--g~~V~~~d~~~~ 77 (197)
T d1j4aa1 41 VRDQVVGVVG-TGHIGQVFMQIMEGF--GAKVITYDIFRN 77 (197)
T ss_dssp GGGSEEEEEC-CSHHHHHHHHHHHHT--TCEEEEECSSCC
T ss_pred ccCCeEEEec-ccccchhHHHhHhhh--cccccccCcccc
Confidence 5799999999 899999999988654 788888877543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=80.34 E-value=0.62 Score=43.10 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=28.7
Q ss_pred CEEEEECCCChhHHHHHHHHHHcCCCcEEEEEeCCC
Q psy7542 62 KNIFITGASGFVGKVLLEKILRTCENVKIYILLRPK 97 (762)
Q Consensus 62 k~VLVTGATGFLG~~LvekLL~~gp~v~V~~LvR~~ 97 (762)
++|.|.|| |.||+.++..+++. |++|.+.++..
T Consensus 5 ~~vaViGa-G~mG~~iA~~~a~~--G~~V~l~D~~~ 37 (186)
T d1wdka3 5 KQAAVLGA-GIMGGGIAYQSASK--GTPILMKDINE 37 (186)
T ss_dssp SSEEEECC-HHHHHHHHHHHHHT--TCCEEEECSSH
T ss_pred CEEEEECc-CHHHHHHHHHHHhC--CCeEEEEECCH
Confidence 57999996 99999999999998 77788888864
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