Psyllid ID: psy7550

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
MSGEGPNKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMHGCYT
cccccccHHHHHHHHHHHHccccccccccccccccccEEccccEEEEEcccccccccccEEEEEEcccccccccHHHHHHHcccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccc
cccccccHHHHHHHHHHHHHcccccEccccccEcccEEEccccEEEcHHHHHHHHHHccccccEEEcccccccHHHHHHHHHcccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccc
msgegpnknDIEVIFKKLrniptnkecfdcnaknptwssvTYGVFICIDCSAVHRGLGVHLSFVrstqldtnWTWVQLRQMQLGGNANAVSFfnqhnctskdaQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMHGCYT
msgegpnkndIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMHGCYT
MSGEGPNKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMHGCYT
**********IEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAVSFFNQHNCT***********AAQLYREKLQHAAVQAMKIHGTKLFLDAMHGC**
****************KLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAVSFFNQHN************RAAQLYREKLQHAA*********************
********NDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMHGCYT
*******KNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMHGCYT
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSGEGPNKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMHGCYT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query144 2.2.26 [Sep-21-2011]
Q8N6H7 521 ADP-ribosylation factor G yes N/A 0.958 0.264 0.647 1e-54
Q9D8S3 523 ADP-ribosylation factor G yes N/A 0.923 0.254 0.669 2e-54
Q4R4C9 516 ADP-ribosylation factor G N/A N/A 0.923 0.257 0.676 2e-54
Q3MID3 520 ADP-ribosylation factor G yes N/A 0.944 0.261 0.639 2e-54
Q5RAT7 521 ADP-ribosylation factor G yes N/A 0.930 0.257 0.656 3e-54
Q5R787 516 ADP-ribosylation factor G no N/A 0.923 0.257 0.676 3e-54
Q4KLN7 525 ADP-ribosylation factor G no N/A 0.923 0.253 0.676 3e-54
A1L520 520 ADP-ribosylation factor G yes N/A 0.958 0.265 0.640 9e-54
Q17R07 517 ADP-ribosylation factor G no N/A 0.923 0.257 0.669 9e-54
Q9NP61 516 ADP-ribosylation factor G no N/A 0.923 0.257 0.669 1e-53
>sp|Q8N6H7|ARFG2_HUMAN ADP-ribosylation factor GTPase-activating protein 2 OS=Homo sapiens GN=ARFGAP2 PE=1 SV=1 Back     alignment and function desciption
 Score =  211 bits (537), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 90/139 (64%), Positives = 112/139 (80%), Gaps = 1/139 (0%)

Query: 1   MSGEGPNKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVH 60
           M+ E PNK +I+ +FK+LR +PTNK CFDC AKNP+W+S+TYGVF+CIDCS VHR LGVH
Sbjct: 1   MAAE-PNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVH 59

Query: 61  LSFVRSTQLDTNWTWVQLRQMQLGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQ 120
           LSF+RST+LD+NW W QLR MQ+GGNANA +FF QH CT+ DA  KYNSRAAQ+YREK++
Sbjct: 60  LSFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHGCTANDANTKYNSRAAQMYREKIR 119

Query: 121 HAAVQAMKIHGTKLFLDAM 139
                A+  HGT L++D M
Sbjct: 120 QLGSAALARHGTDLWIDNM 138
GTPase-activating protein (GAP) for ADP ribosylation factor 1 (ARF1). Implicated in coatomer-mediated protein transport between the Golgi complex and the endoplasmic reticulum. Hydrolysis of ARF1-bound GTP may lead to dissociation of coatomer from Golgi-derived membranes to allow fusion with target membranes.
Homo sapiens (taxid: 9606)
>sp|Q9D8S3|ARFG3_MOUSE ADP-ribosylation factor GTPase-activating protein 3 OS=Mus musculus GN=Arfgap3 PE=2 SV=2 Back     alignment and function description
>sp|Q4R4C9|ARFG3_MACFA ADP-ribosylation factor GTPase-activating protein 3 OS=Macaca fascicularis GN=ARFGAP3 PE=2 SV=1 Back     alignment and function description
>sp|Q3MID3|ARFG2_RAT ADP-ribosylation factor GTPase-activating protein 2 OS=Rattus norvegicus GN=Arfgap2 PE=2 SV=1 Back     alignment and function description
>sp|Q5RAT7|ARFG2_PONAB ADP-ribosylation factor GTPase-activating protein 2 OS=Pongo abelii GN=ARFGAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q5R787|ARFG3_PONAB ADP-ribosylation factor GTPase-activating protein 3 OS=Pongo abelii GN=ARFGAP3 PE=2 SV=1 Back     alignment and function description
>sp|Q4KLN7|ARFG3_RAT ADP-ribosylation factor GTPase-activating protein 3 OS=Rattus norvegicus GN=Arfgap3 PE=2 SV=1 Back     alignment and function description
>sp|A1L520|ARFG2_BOVIN ADP-ribosylation factor GTPase-activating protein 2 OS=Bos taurus GN=ARFGAP2 PE=2 SV=1 Back     alignment and function description
>sp|Q17R07|ARFG3_BOVIN ADP-ribosylation factor GTPase-activating protein 3 OS=Bos taurus GN=ARFGAP3 PE=2 SV=1 Back     alignment and function description
>sp|Q9NP61|ARFG3_HUMAN ADP-ribosylation factor GTPase-activating protein 3 OS=Homo sapiens GN=ARFGAP3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query144
242011701 557 ADP-ribosylation factor GTPase-activatin 0.951 0.245 0.795 1e-62
383855818 544 PREDICTED: ADP-ribosylation factor GTPas 0.944 0.25 0.772 5e-61
110766623 534 PREDICTED: ADP-ribosylation factor GTPas 0.951 0.256 0.766 1e-60
328784241 545 PREDICTED: ADP-ribosylation factor GTPas 0.944 0.249 0.757 8e-60
241247304 543 zinc finger protein, putative [Ixodes sc 0.951 0.252 0.751 1e-59
350398779 533 PREDICTED: ADP-ribosylation factor GTPas 0.951 0.257 0.773 2e-59
350398782 544 PREDICTED: ADP-ribosylation factor GTPas 0.944 0.25 0.772 4e-59
340714901 534 PREDICTED: ADP-ribosylation factor GTPas 0.951 0.256 0.773 5e-59
340714903 545 PREDICTED: ADP-ribosylation factor GTPas 0.944 0.249 0.772 7e-59
380020105 529 PREDICTED: ADP-ribosylation factor GTPas 0.951 0.258 0.773 7e-59
>gi|242011701|ref|XP_002426585.1| ADP-ribosylation factor GTPase-activating protein, putative [Pediculus humanus corporis] gi|212510734|gb|EEB13847.1| ADP-ribosylation factor GTPase-activating protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 109/137 (79%), Positives = 122/137 (89%)

Query: 1   MSGEGPNKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVH 60
           M+   P+K+DI+ IFKKLR + TNK CFDCNAKNPTWSSVTYGVFICIDCSAVHR LGVH
Sbjct: 1   MADNSPSKSDIQAIFKKLRAVATNKSCFDCNAKNPTWSSVTYGVFICIDCSAVHRSLGVH 60

Query: 61  LSFVRSTQLDTNWTWVQLRQMQLGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQ 120
           ++FVRSTQLDTNWTWVQLRQMQLGGNANA +FF QHNC + DAQQKY SRAAQLY++KL+
Sbjct: 61  VTFVRSTQLDTNWTWVQLRQMQLGGNANAANFFRQHNCHTTDAQQKYTSRAAQLYKDKLK 120

Query: 121 HAAVQAMKIHGTKLFLD 137
            AAVQAMKIHGTKL L+
Sbjct: 121 QAAVQAMKIHGTKLHLE 137

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383855818|ref|XP_003703407.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|110766623|ref|XP_393119.3| PREDICTED: ADP-ribosylation factor GTPase-activating protein 2-like isoform 2 [Apis mellifera] Back     alignment and taxonomy information
>gi|328784241|ref|XP_003250419.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 2-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|241247304|ref|XP_002402792.1| zinc finger protein, putative [Ixodes scapularis] gi|215496398|gb|EEC06038.1| zinc finger protein, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|350398779|ref|XP_003485302.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 2-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|350398782|ref|XP_003485303.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 2-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340714901|ref|XP_003395961.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 2-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|340714903|ref|XP_003395962.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 2-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|380020105|ref|XP_003693936.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein 2-like [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query144
FB|FBgn0037182 552 ArfGAP3 "ADP-ribosylation fact 0.923 0.240 0.744 2.7e-52
UNIPROTKB|E9PIY6 327 ARFGAP2 "ADP-ribosylation fact 0.958 0.422 0.647 3.6e-50
UNIPROTKB|E9PK28239 ARFGAP2 "ADP-ribosylation fact 0.958 0.577 0.647 3.6e-50
UNIPROTKB|E9PN48 252 ARFGAP2 "ADP-ribosylation fact 0.958 0.547 0.647 3.6e-50
UNIPROTKB|Q8N6H7 521 ARFGAP2 "ADP-ribosylation fact 0.958 0.264 0.647 3.6e-50
RGD|1560066 525 Arfgap3 "ADP-ribosylation fact 0.923 0.253 0.676 7.4e-50
UNIPROTKB|F1SIB9 520 ARFGAP2 "Uncharacterized prote 0.958 0.265 0.647 9.5e-50
UNIPROTKB|E2QYR7 520 ARFGAP2 "Uncharacterized prote 0.944 0.261 0.649 1.2e-49
UNIPROTKB|I3LIL1 517 I3LIL1 "Uncharacterized protei 0.930 0.259 0.656 1.5e-49
MGI|MGI:1913501 523 Arfgap3 "ADP-ribosylation fact 0.923 0.254 0.669 1.5e-49
FB|FBgn0037182 ArfGAP3 "ADP-ribosylation factor GTPase activating protein 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 99/133 (74%), Positives = 110/133 (82%)

Query:     5 GPNKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFV 64
             GP+K +IE +F +LR  P NK CFDC AK PTWSSVTYG+FICIDCSAVHR LGVHL+FV
Sbjct:     7 GPSKQEIESVFSRLRAQPANKSCFDCAAKAPTWSSVTYGIFICIDCSAVHRNLGVHLTFV 66

Query:    65 RSTQLDTNWTWVQLRQMQLGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAV 124
             RST LDTNWTW+QLRQMQLGGNANA  FF  HNC++ DAQ KYNSRAAQLYR+KL   A 
Sbjct:    67 RSTNLDTNWTWLQLRQMQLGGNANAAQFFRAHNCSTTDAQVKYNSRAAQLYRDKLCAQAQ 126

Query:   125 QAMKIHGTKLFLD 137
             QAMK HGTKL L+
Sbjct:   127 QAMKTHGTKLHLE 139
GO:0008060 "ARF GTPase activator activity" evidence=ISS
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046331 "lateral inhibition" evidence=IMP
GO:0005912 "adherens junction" evidence=IDA
GO:0005737 "cytoplasm" evidence=IDA
GO:0001745 "compound eye morphogenesis" evidence=IMP
UNIPROTKB|E9PIY6 ARFGAP2 "ADP-ribosylation factor GTPase-activating protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PK28 ARFGAP2 "ADP-ribosylation factor GTPase-activating protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PN48 ARFGAP2 "ADP-ribosylation factor GTPase-activating protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N6H7 ARFGAP2 "ADP-ribosylation factor GTPase-activating protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1560066 Arfgap3 "ADP-ribosylation factor GTPase activating protein 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SIB9 ARFGAP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYR7 ARFGAP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|I3LIL1 I3LIL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1913501 Arfgap3 "ADP-ribosylation factor GTPase activating protein 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8N6H7ARFG2_HUMANNo assigned EC number0.64740.95830.2648yesN/A
Q3MID3ARFG2_RATNo assigned EC number0.63970.94440.2615yesN/A
Q09531YQP4_CAEELNo assigned EC number0.62140.96520.2627yesN/A
Q9D8S3ARFG3_MOUSENo assigned EC number0.66910.92360.2543yesN/A
Q5RAT7ARFG2_PONABNo assigned EC number0.65670.93050.2571yesN/A
Q10367GLO3_SCHPONo assigned EC number0.51630.81250.2422yesN/A
A1L520ARFG2_BOVINNo assigned EC number0.64020.95830.2653yesN/A
Q9FIQ0AGD9_ARATHNo assigned EC number0.56910.82630.2960yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query144
smart00105119 smart00105, ArfGap, Putative GTP-ase activating pr 2e-47
pfam01412117 pfam01412, ArfGap, Putative GTPase activating prot 6e-46
COG5347 319 COG5347, COG5347, GTPase-activating protein that r 3e-41
PLN03114 395 PLN03114, PLN03114, ADP-ribosylation factor GTPase 2e-40
PLN03119 648 PLN03119, PLN03119, putative ADP-ribosylation fact 4e-08
PLN03131 705 PLN03131, PLN03131, hypothetical protein; Provisio 3e-07
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information 
 Score =  148 bits (376), Expect = 2e-47
 Identities = 59/111 (53%), Positives = 70/111 (63%), Gaps = 7/111 (6%)

Query: 15  FKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWT 74
            K LR+IP NK+CFDC A NPTW+SV  GVF+CI+CS +HR LGVH+S VRS  LD  WT
Sbjct: 1   LKLLRSIPGNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLD-TWT 59

Query: 75  WVQLRQMQLGGNANAVSFFNQHNC------TSKDAQQKYNSRAAQLYREKL 119
             +LR +Q GGN NA S +  +           D QQKY S  A  Y EKL
Sbjct: 60  EEELRLLQKGGNENANSIWESNLDDFSLKPPDDDDQQKYESFIAAKYEEKL 110

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 119
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf Back     alignment and domain information
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 144
KOG0706|consensus 454 100.0
KOG0704|consensus 386 100.0
PLN03114 395 ADP-ribosylation factor GTPase-activating protein 100.0
COG5347 319 GTPase-activating protein that regulates ARFs (ADP 100.0
KOG0703|consensus 287 100.0
PF01412116 ArfGap: Putative GTPase activating protein for Arf 100.0
smart00105112 ArfGap Putative GTP-ase activating proteins for th 100.0
PLN03119 648 putative ADP-ribosylation factor GTPase-activating 99.97
PLN03131 705 hypothetical protein; Provisional 99.96
KOG0705|consensus 749 99.91
KOG0521|consensus 785 99.83
KOG0818|consensus 669 99.79
KOG1117|consensus 1186 99.7
KOG0702|consensus 524 99.33
KOG0521|consensus785 94.64
PRK00085247 recO DNA repair protein RecO; Reviewed 88.25
TIGR00613241 reco DNA repair protein RecO. All proteins in this 83.36
PRK12495226 hypothetical protein; Provisional 82.46
PF0064342 zf-B_box: B-box zinc finger; InterPro: IPR000315 Z 81.52
PF0032036 GATA: GATA zinc finger; InterPro: IPR000679 Zinc f 80.16
>KOG0706|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.2e-46  Score=315.54  Aligned_cols=136  Identities=66%  Similarity=1.148  Sum_probs=132.0

Q ss_pred             CCCChhHHHHHHHHHhcCCCCCCccCCCCCCCCceeeccchhcchhhhhhhhcCCCCCcceeeccCCCCCCHHHHHHHHh
Q psy7550           4 EGPNKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQL   83 (144)
Q Consensus         4 ~~~~~~~~~~~~~~L~~~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~lg~~iS~VkS~~ld~~w~~~~l~~m~~   83 (144)
                      ..+.+.+.+.+|+.|+..++||.|||||+++|+|+||+||||||++||++||.||+|||||||++||+ |+..||+.|+.
T Consensus         3 ~~~~k~d~~~vfkkLRs~~~NKvCFDCgAknPtWaSVTYGIFLCiDCSAvHRnLGVHiSFVRSTnLDs-Ws~~qLR~M~~   81 (454)
T KOG0706|consen    3 ATPNKQDIQTVFKKLRSQSENKVCFDCGAKNPTWASVTYGIFLCIDCSAVHRNLGVHISFVRSTNLDS-WSWEQLRRMQV   81 (454)
T ss_pred             CccchhhHHHHHHHHhcCCCCceecccCCCCCCceeecceEEEEEecchhhhccccceEEEeeccccc-CCHHHHhHhhh
Confidence            35689999999999999999999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             hChHHHHHHHhhcCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeeecCCC
Q psy7550          84 GGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMH  140 (144)
Q Consensus        84 gGN~~~~~~~e~~~~~~~~~~~ky~~~~~~~yr~kl~~~~~~~~~~~~~~~~~~~~~  140 (144)
                      |||.+|+.||.+|+....+.+.||++++++.||++|+.++.++|+++++.+++|..+
T Consensus        82 GGN~nA~~FFkqhg~~t~d~~aKY~SraA~~Yr~kl~~lv~kam~~~~~~l~l~~~~  138 (454)
T KOG0706|consen   82 GGNANARVFFKQHGCVTLDANAKYNSRAAKLYREKLKKLVQKAMAEHGTSLLLDSAV  138 (454)
T ss_pred             cCchhHHHHHHHcCCcchhhhhhhccHHHHHHHHHHHHHHHHHHHhcCccccccCCC
Confidence            999999999999999999999999999999999999999999999999999998744

>KOG0704|consensus Back     alignment and domain information
>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional Back     alignment and domain information
>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0703|consensus Back     alignment and domain information
>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins [] Back     alignment and domain information
>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF Back     alignment and domain information
>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional Back     alignment and domain information
>PLN03131 hypothetical protein; Provisional Back     alignment and domain information
>KOG0705|consensus Back     alignment and domain information
>KOG0521|consensus Back     alignment and domain information
>KOG0818|consensus Back     alignment and domain information
>KOG1117|consensus Back     alignment and domain information
>KOG0702|consensus Back     alignment and domain information
>KOG0521|consensus Back     alignment and domain information
>PRK00085 recO DNA repair protein RecO; Reviewed Back     alignment and domain information
>TIGR00613 reco DNA repair protein RecO Back     alignment and domain information
>PRK12495 hypothetical protein; Provisional Back     alignment and domain information
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query144
2crw_A149 Solution Structure Of The Arfgap Domain Of Adp-Ribo 1e-53
2p57_A144 Gap Domain Of Znf289, An Id1-Regulated Zinc Finger 7e-52
3o47_A 329 Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le 1e-24
3dwd_A147 Crystal Structure Of The Arfgap Domain Of Human Arf 1e-24
2owa_A138 Crystal Structure Of Putative Gtpase Activating Pro 3e-22
3sub_A163 Crystal Structure Of The Catalytic Domain Of Plasmo 2e-20
2crr_A141 Solution Structure Of Arfgap Domain From Human Smap 2e-15
2iqj_A134 Crystal Structure Of The Gap Domain Of Smap1l (Loc6 3e-14
3jue_A 368 Crystal Structure Of Arfgap And Ank Repeat Domain O 2e-11
4f1p_A 368 Crystal Structure Of Mutant S554d For Arfgap And An 2e-11
3t9k_A 390 Crystal Structure Of Acap1 C-portion Mutant S554d F 2e-11
2b0o_E 301 Crystal Structure Of Uplc1 Gap Domain Length = 301 4e-11
3lvq_E 497 The Crystal Structure Of Asap3 In Complex With Arf6 7e-11
3fm8_C 392 Crystal Structure Of Full Length Centaurin Alpha-1 1e-10
3feh_A 386 Crystal Structure Of Full Length Centaurin Alpha-1 1e-10
1dcq_A 278 Crystal Structure Of The Arf-Gap Domain And Ankyrin 1e-10
2olm_A140 Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 5e-07
2d9l_A134 Solution Structure Of The Arfgap Domain Of Human Ri 6e-07
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149 Back     alignment and structure 
Iteration: 1

 Score =  204 bits (520), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 89/133 (66%), Positives = 111/133 (83%)
Query: 6   PNKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVR 65
           P+K DI  IFK+LR++PTNK CFDC AKNP+W+S+TYGVF+CIDCS  HR LGVHLSF+R
Sbjct: 11  PSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIR 70
Query: 66  STQLDTNWTWVQLRQMQLGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQ 125
           ST+LD+NW+W QLR MQ+GGNA+A SFF+QH C++ D   KYNSRAAQLYREK++  A Q
Sbjct: 71  STELDSNWSWFQLRCMQVGGNASASSFFHQHGCSTNDTNAKYNSRAAQLYREKIKSLASQ 130
Query: 126 AMKIHGTKLFLDA 138
           A + HGT L+LD+
Sbjct: 131 ATRKHGTDLWLDS 143
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144 Back     alignment and structure
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 Back     alignment and structure
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147 Back     alignment and structure
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138 Back     alignment and structure
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163 Back     alignment and structure
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141 Back     alignment and structure
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134 Back     alignment and structure
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368 Back     alignment and structure
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390 Back     alignment and structure
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301 Back     alignment and structure
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497 Back     alignment and structure
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392 Back     alignment and structure
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386 Back     alignment and structure
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278 Back     alignment and structure
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140 Back     alignment and structure
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query144
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 2e-67
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 4e-65
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 9e-61
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 1e-56
2owa_A138 Arfgap-like finger domain containing protein; zinc 3e-55
3o47_A 329 ADP-ribosylation factor GTPase-activating protein 6e-44
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 1e-39
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 9e-39
2b0o_E 301 UPLC1; arfgap, structural genomics, structural gen 3e-35
3jue_A 368 Arfgap with coiled-coil, ANK repeat and PH domain 9e-34
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 2e-33
3lju_X 386 ARF-GAP with dual PH domain-containing protein 1; 5e-33
1dcq_A 278 PYK2-associated protein beta; zinc-binding module, 2e-32
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 4e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-10
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149 Back     alignment and structure
 Score =  200 bits (509), Expect = 2e-67
 Identities = 89/133 (66%), Positives = 111/133 (83%)

Query: 6   PNKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVR 65
           P+K DI  IFK+LR++PTNK CFDC AKNP+W+S+TYGVF+CIDCS  HR LGVHLSF+R
Sbjct: 11  PSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIR 70

Query: 66  STQLDTNWTWVQLRQMQLGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQ 125
           ST+LD+NW+W QLR MQ+GGNA+A SFF+QH C++ D   KYNSRAAQLYREK++  A Q
Sbjct: 71  STELDSNWSWFQLRCMQVGGNASASSFFHQHGCSTNDTNAKYNSRAAQLYREKIKSLASQ 130

Query: 126 AMKIHGTKLFLDA 138
           A + HGT L+LD+
Sbjct: 131 ATRKHGTDLWLDS 143
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144 Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163 Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147 Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138 Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134 Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301 Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368 Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140 Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386 Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query144
2crw_A149 ARF GAP 3, ADP-ribosylation factor GTPase-activati 100.0
2p57_A144 GTPase-activating protein ZNF289; zinc finger, GAP 100.0
2owa_A138 Arfgap-like finger domain containing protein; zinc 100.0
3dwd_A147 ADP-ribosylation factor GTPase-activating protein; 100.0
3sub_A163 ADP-ribosylation factor GTPase-activating protein; 100.0
2iqj_A134 Stromal membrane-associated protein 1-like; zinc, 100.0
2crr_A141 Stromal membrane-associated protein SMAP1B; arfgap 100.0
2olm_A140 Nucleoporin-like protein RIP; arfgap, GTPase-activ 100.0
3o47_A 329 ADP-ribosylation factor GTPase-activating protein 100.0
3jue_A 368 Arfgap with coiled-coil, ANK repeat and PH domain 100.0
3lju_X 386 ARF-GAP with dual PH domain-containing protein 1; 99.98
2b0o_E 301 UPLC1; arfgap, structural genomics, structural gen 99.97
1dcq_A 278 PYK2-associated protein beta; zinc-binding module, 99.96
3lvq_E 497 ARF-GAP with SH3 domain, ANK repeat and PH domain 99.96
1gnf_A46 Transcription factor GATA-1; zinc finger, transcri 93.4
3dfx_A63 Trans-acting T-cell-specific transcription factor 91.37
2vut_I43 AREA, nitrogen regulatory protein AREA; transcript 90.39
1u5k_A244 Hypothetical protein; OBD-fold, Zn-binding, recomb 89.22
4gat_A66 Nitrogen regulatory protein AREA; DNA binding prot 88.0
4hc9_A115 Trans-acting T-cell-specific transcription factor; 84.95
2kae_A71 GATA-type transcription factor; zinc finger, GATA- 81.93
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=9.4e-51  Score=304.11  Aligned_cols=138  Identities=64%  Similarity=1.154  Sum_probs=132.3

Q ss_pred             CCCCChhHHHHHHHHHhcCCCCCCccCCCCCCCCceeeccchhcchhhhhhhhcCCCCCcceeeccCCCCCCHHHHHHHH
Q psy7550           3 GEGPNKNDIEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQ   82 (144)
Q Consensus         3 ~~~~~~~~~~~~~~~L~~~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~lg~~iS~VkS~~ld~~w~~~~l~~m~   82 (144)
                      |..+++++.+++|+.|++.|+|+.|||||+++|+|+|+|||||||++|+|+||.||+|||+||||+||+.|+++||+.|+
T Consensus         8 m~~~~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~   87 (149)
T 2crw_A            8 MGDPSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQ   87 (149)
T ss_dssp             SCCCCHHHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHH
Confidence            44578999999999999999999999999999999999999999999999999999999999999999449999999999


Q ss_pred             hhChHHHHHHHhhcCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeeecCCC
Q psy7550          83 LGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDAMH  140 (144)
Q Consensus        83 ~gGN~~~~~~~e~~~~~~~~~~~ky~~~~~~~yr~kl~~~~~~~~~~~~~~~~~~~~~  140 (144)
                      .+||.++|+||++++.+..++++||+++++++||++|.+++++++++||++|++|+..
T Consensus        88 ~~GN~~an~~~e~~~~~~~~i~~KY~s~~a~~Yr~~l~~~~~~~~~~~~~~~~~~~~~  145 (149)
T 2crw_A           88 VGGNASASSFFHQHGCSTNDTNAKYNSRAAQLYREKIKSLASQATRKHGTDLWLDSSG  145 (149)
T ss_dssp             TTCHHHHHHHHHHHCCCCCCHHHHTTSHHHHHHHHHHHHHHHHHHHTTSSSCTTSCCC
T ss_pred             HHhhHHHHHHHHhcCCCCcchhhCcCcHHHHHHHHHHHHHHHHHHHHcCCeeEeCCCC
Confidence            9999999999999999999999999999999999999999999999999999998753
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Back     alignment and structure
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Back     alignment and structure
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Back     alignment and structure
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Back     alignment and structure
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Back     alignment and structure
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Back     alignment and structure
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Back     alignment and structure
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A Back     alignment and structure
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Back     alignment and structure
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Back     alignment and structure
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Back     alignment and structure
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Back     alignment and structure
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Back     alignment and structure
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Back     alignment and structure
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Back     alignment and structure
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C Back     alignment and structure
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Back     alignment and structure
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A Back     alignment and structure
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 144
d1dcqa2122 g.45.1.1 (A:247-368) Pyk2-associated protein beta 8e-35
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  115 bits (289), Expect = 8e-35
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 14  IFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNW 73
           I  +++ +  N  C DC A +PTW S   G+  CI+CS +HR LGVH S ++S  LD   
Sbjct: 5   IISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV-L 63

Query: 74  TWVQLRQMQLGGNANAVSFFNQHNCTSKDAQQKYNSRAAQLYREK 118
              +L   +  GNA          C   +   K N  +  + R+ 
Sbjct: 64  GTSELLLAKNIGNAGFNEIM--ECCLPSEDPVKPNPGSDMIARKD 106

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query144
d1dcqa2122 Pyk2-associated protein beta ARF-GAP domain {Mouse 100.0
d1u5ka2157 Recombinational repair protein RecO, C-terminal do 93.76
d1y0ja139 Erythroid transcription factor GATA-1 {Mouse (Mus 92.25
d3gata_66 Erythroid transcription factor GATA-1 {Chicken (Ga 81.27
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.1e-39  Score=231.86  Aligned_cols=87  Identities=33%  Similarity=0.569  Sum_probs=83.6

Q ss_pred             HHHHHHHHhcCCCCCCccCCCCCCCCceeeccchhcchhhhhhhhcCCCCCcceeeccCCCCCCHHHHHHHHhhChHHHH
Q psy7550          11 IEVIFKKLRNIPTNKECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAV   90 (144)
Q Consensus        11 ~~~~~~~L~~~~~N~~C~DCg~~~p~w~s~~~GiflC~~CsgiHR~lg~~iS~VkS~~ld~~w~~~~l~~m~~gGN~~~~   90 (144)
                      .+++|+.|++.|+|+.|||||+++|+|+|+|||||||+.|||+||+||+|||+|||++||+ |++++|+.|+.+||..+|
T Consensus         2 t~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~-w~~~~i~~~~~~GN~~~n   80 (122)
T d1dcqa2           2 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV-LGTSELLLAKNIGNAGFN   80 (122)
T ss_dssp             HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSC-CCGGGGHHHHHSCHHHHH
T ss_pred             hHHHHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCC-CCHHHHHHHHHHhHHHHH
Confidence            4688999999999999999999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             HHHhhcCC
Q psy7550          91 SFFNQHNC   98 (144)
Q Consensus        91 ~~~e~~~~   98 (144)
                      ++|+++..
T Consensus        81 ~~~ea~~~   88 (122)
T d1dcqa2          81 EIMECCLP   88 (122)
T ss_dssp             HHHTTTCC
T ss_pred             HHHHhhCC
Confidence            99997654
>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure