Psyllid ID: psy7603

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
MDSDEDTSYVDSGNESSSDDIGYAMEVENQNPKDRQNDVEEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSASTSSGLVFSAVDFGSGGSWFEFKR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHccccccHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHcccccEEEEcccccccccEEEccccccccccEEEEcc
Coil and Loop (DISEMBL)
mdsdedtsyvdsgnesssddIGYAMEVenqnpkdrqnDVEEFVFEVLSTEEIVQHMIDCIKEvnnvveipaTTTRILLNHFKWDKEKLMERyydgdqesstldysastssglvfsavdfgsggswfefkr
Flexible Loop (DISEMBL)
mdsdedtsyvdsgnesssddigYAMEVENQNPKDRQNDVEEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSASTSSGLVFSAVDFGSGGSWFEFKR
Low Complexity Region (SEG)
MDSDEDTSYVDSGNESSSDDIGYAMEVENQNPKDRQNDVEEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQEsstldysastssGLVFSAVDFGSGGSWFEFKR
Disordered region (IsUnstruct)
***************************************EEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD****************GLVFSAVDFGSGGSWF****
Disordered Region (DISOPRED)
MDSDEDTS*********SDDIGYAM*****************VFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSASTSSGLVFSAVDFGSGGSWFEFKR
Disordered Region (DISEMBL)
*****************SDDIGYAMEVENQNPKDRQNDVEEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSASTSSGLVFSAVDFGSGGSWFEFKR
Disordered Region (DISPRO)
***************************************EEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSASTSSGLVFSAVDFGSGGSWFEFKR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDSDEDTSYVDSGNESSSDDIGYAMEVENQNPKDRQNDVEEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSASTSSGLVFSAVDFGSGGSWFEFKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
Q6NW85	533	E3 ubiquitin-protein liga	yes	N/A	0.730	0.178	0.438	2e-19
Q6PFJ9	527	E3 ubiquitin-protein liga	no	N/A	0.453	0.111	0.661	6e-19
Q94981	503	Protein ariadne-1 OS=Dros	yes	N/A	0.723	0.186	0.494	8e-19
Q32NS4	529	E3 ubiquitin-protein liga	N/A	N/A	0.453	0.111	0.644	1e-18
Q9Y4X5	557	E3 ubiquitin-protein liga	yes	N/A	0.453	0.105	0.644	1e-18
Q9Z1K5	555	E3 ubiquitin-protein liga	yes	N/A	0.453	0.106	0.644	1e-18
A2VEA3	555	E3 ubiquitin-protein liga	yes	N/A	0.453	0.106	0.644	1e-18
B1H1E4	529	E3 ubiquitin-protein liga	yes	N/A	0.446	0.109	0.637	2e-18
Q6T486	520	Probable E3 ubiquitin-pro	yes	N/A	0.676	0.169	0.378	1e-05

>sp|Q6NW85|ARI1L_DANRE E3 ubiquitin-protein ligase arih1l OS=Danio rerio GN=arih1l PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/130 (43%), Positives = 74/130 (56%), Gaps = 35/130 (26%)

Query: 1   MDSDEDTSY----------------VDSGNESSSDDIGYAMEVENQNPK----------- 33
           MDSDE  +Y                VDSG E + DD     EVE  +P            
Sbjct: 1   MDSDEGYNYEFDDEEEEEEEEEECSVDSGEEEAVDDSLELGEVELLDPAVAGGEPDDCAD 60

Query: 34  -------DRQNDVEEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKE 86
                    Q D E++ FEVL+TE+I+QHM++CI++VN V++ PAT TRILL+HF WDKE
Sbjct: 61  TGGGGPGPGQED-EDYRFEVLTTEQILQHMVECIRDVNEVIQNPATITRILLSHFNWDKE 119

Query: 87  KLMERYYDGD 96
           KLMERY+DG+
Sbjct: 120 KLMERYFDGN 129

E3 ubiquitin-protein ligase, which catalyzes polyubiquitination of target proteins together with ubiquitin-conjugating enzyme E2 ube2l3.
Danio rerio (taxid: 7955)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q6PFJ9|ARI1_DANRE E3 ubiquitin-protein ligase arih1 OS=Danio rerio GN=arih1 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/59 (66%), Positives = 52/59 (88%)

Query: 38  DVEEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGD 96
           D E++ FEVL+ E+I+QHM++CI+EVN V++ PAT TRILL+HF WDKEKLMERY+DG+
Sbjct: 65  DEEDYRFEVLTAEQILQHMVECIREVNEVIQNPATITRILLSHFNWDKEKLMERYFDGN 123

E3 ubiquitin-protein ligase, which catalyzes polyubiquitination of target proteins together with ubiquitin-conjugating enzyme E2 ube2l3.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q94981|ARI1_DROME Protein ariadne-1 OS=Drosophila melanogaster GN=ari-1 PE=1 SV=2

 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 68/99 (68%), Gaps = 5/99 (5%)

Query: 1  MDSDEDTSY---VDSGN--ESSSDDIGYAMEVENQNPKDRQNDVEEFVFEVLSTEEIVQH 55
          MDSD D  +   VDSGN       D  + MEV+  +  DRQ D +++ ++VL+T+EIVQH
Sbjct: 1  MDSDNDNDFCDNVDSGNVSSGDDGDDDFGMEVDLPSSADRQMDQDDYQYKVLTTDEIVQH 60

Query: 56 MIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94
            + I E N ++++P  TTRILLNHFKWDKEKL+E+Y+D
Sbjct: 61 QREIIDEANLLLKLPTPTTRILLNHFKWDKEKLLEKYFD 99

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes, such as UBCD10/UBE2L3, and then transfers it to substrates.

Drosophila melanogaster (taxid: 7227)

>sp|Q32NS4|ARI1_XENLA E3 ubiquitin-protein ligase arih1 OS=Xenopus laevis GN=arih1 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 52/59 (88%)

Query: 40  EEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
           E++ +EVL+ E+I+QHM++CI+EVN V++ PAT TRILL+HF WDKEKLMERY+DG+ E
Sbjct: 69  EDYRYEVLTAEQILQHMVECIREVNEVIQNPATITRILLSHFNWDKEKLMERYFDGNLE 127

E3 ubiquitin-protein ligase, which catalyzes polyubiquitination of target proteins together with ubiquitin-conjugating enzyme E2 ube2l3.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9Y4X5|ARI1_HUMAN E3 ubiquitin-protein ligase ARIH1 OS=Homo sapiens GN=ARIH1 PE=1 SV=2

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 52/59 (88%)

Query: 40  EEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
           E++ +EVL+ E+I+QHM++CI+EVN V++ PAT TRILL+HF WDKEKLMERY+DG+ E
Sbjct: 97  EDYRYEVLTAEQILQHMVECIREVNEVIQNPATITRILLSHFNWDKEKLMERYFDGNLE 155

E3 ubiquitin-protein ligase, which catalyzes polyubiquitination of target proteins together with ubiquitin-conjugating enzyme E2 UBE2L3. May play a role in protein translation by mediating polyubiquitination of EIF4E2, leading to its subsequent degradation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9Z1K5|ARI1_MOUSE E3 ubiquitin-protein ligase ARIH1 OS=Mus musculus GN=Arih1 PE=2 SV=3

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 52/59 (88%)

Query: 40  EEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
           E++ +EVL+ E+I+QHM++CI+EVN V++ PAT TRILL+HF WDKEKLMERY+DG+ E
Sbjct: 95  EDYRYEVLTAEQILQHMVECIREVNEVIQNPATITRILLSHFNWDKEKLMERYFDGNLE 153

E3 ubiquitin-protein ligase, which catalyzes polyubiquitination of target proteins together with ubiquitin-conjugating enzyme E2 UBE2L3. May play a role in protein translation by mediating polyubiquitination of EIF4E2, leading to its subsequent degradation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A2VEA3|ARI1_BOVIN E3 ubiquitin-protein ligase ARIH1 OS=Bos taurus GN=ARIH1 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 52/59 (88%)

Query: 40  EEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
           E++ +EVL+ E+I+QHM++CI+EVN V++ PAT TRILL+HF WDKEKLMERY+DG+ E
Sbjct: 95  EDYRYEVLTAEQILQHMVECIREVNEVIQNPATITRILLSHFNWDKEKLMERYFDGNLE 153

E3 ubiquitin-protein ligase, which catalyzes polyubiquitination of target proteins together with ubiquitin-conjugating enzyme E2 UBE2L3. May play a role in protein translation by mediating polyubiquitination of EIF4E2, leading to its subsequent degradation.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|B1H1E4|ARI1_XENTR E3 ubiquitin-protein ligase arih1 OS=Xenopus tropicalis GN=arih1 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 51/58 (87%)

Query: 41  EFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
           ++ +EVL+ E+I+QHM++CI+EVN V++ PAT TRILL+HF WDKEKLMERY+DG+ E
Sbjct: 70  DYRYEVLTAEQILQHMVECIREVNEVIQNPATITRILLSHFNWDKEKLMERYFDGNLE 127

E3 ubiquitin-protein ligase, which catalyzes polyubiquitination of target proteins together with ubiquitin-conjugating enzyme E2 ube2l3.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6T486|RBRA_DICDI Probable E3 ubiquitin-protein ligase rbrA OS=Dictyostelium discoideum GN=rbrA PE=3 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 7/95 (7%)

Query: 5   EDTSYVDSGNESSSD---DIGYAMEV---ENQNPKDRQNDVEEFVFEVLSTEEIVQHMID 58
           +D S  +SGNES  D   D     E    ENQ  +       +  FEVL+ +++      
Sbjct: 13  DDDSAEESGNESLDDTEYDDAATQEFDFDENQPQRSLGKLTRQKSFEVLNKDDLFSESHK 72

Query: 59  CIKEVNNVVEIPA-TTTRILLNHFKWDKEKLMERY 92
            IKEV +V+ IP+      LL H KW+KEKL+ERY
Sbjct: 73  IIKEVKDVLSIPSEAAVSTLLRHMKWNKEKLIERY 107

Might act as an E3 ubiquitin-protein ligase. Appears to be required for normal cell-type proportioning and cell sorting during multicellular development. In addition to being necessary for a normal percentage of prestalk cells and the organization of the slug, rbrA is also necessary for spore cell viability.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
332029156	495	Protein ariadne-1-like protein [Acromyrm	0.753	0.197	0.77	2e-37
307181827	509	Protein ariadne-1 [Camponotus floridanus	0.753	0.192	0.77	3e-37
322797457	493	hypothetical protein SINV_05140 [Solenop	0.753	0.198	0.77	3e-37
345485088	510	PREDICTED: E3 ubiquitin-protein ligase a	0.753	0.192	0.75	1e-36
307214633	510	Protein ariadne-1 [Harpegnathos saltator	0.753	0.192	0.76	1e-36
242016336	506	protein ariadne-1, putative [Pediculus h	0.753	0.193	0.74	2e-35
48138658	509	PREDICTED: protein ariadne-1 homolog [Ap	0.753	0.192	0.757	2e-35
383849296	508	PREDICTED: E3 ubiquitin-protein ligase a	0.753	0.192	0.747	8e-35
350401290	509	PREDICTED: E3 ubiquitin-protein ligase a	0.753	0.192	0.747	3e-34
340720568	509	PREDICTED: e3 ubiquitin-protein ligase A	0.753	0.192	0.747	3e-34

>gi|332029156|gb|EGI69167.1| Protein ariadne-1-like protein [Acromyrmex echinatior]

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/100 (77%), Positives = 89/100 (89%), Gaps = 2/100 (2%)

Query: 1   MDSDEDTSY--VDSGNESSSDDIGYAMEVENQNPKDRQNDVEEFVFEVLSTEEIVQHMID 58
           MDS+E+T Y  VDSGNESS DD+ +AME+E+ NP++R  DV+E+ FEVLSTEEIVQHM+D
Sbjct: 1   MDSEEETLYDDVDSGNESSGDDVDFAMEIESGNPRERATDVDEYPFEVLSTEEIVQHMVD 60

Query: 59  CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
            IKEVN VVEIPATTTRILLNHFKWDKEKLMER+YDGDQE
Sbjct: 61  SIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQE 100

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181827|gb|EFN69270.1| Protein ariadne-1 [Camponotus floridanus]

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/100 (77%), Positives = 89/100 (89%), Gaps = 2/100 (2%)

Query: 1   MDSDEDTSY--VDSGNESSSDDIGYAMEVENQNPKDRQNDVEEFVFEVLSTEEIVQHMID 58
           MDS+E+T Y  VDSGNESS DD+ +AME+E+ NP++R  DV+E+ FEVLSTEEIVQHM+D
Sbjct: 1   MDSEEETLYDDVDSGNESSGDDVDFAMEIESGNPRERATDVDEYPFEVLSTEEIVQHMVD 60

Query: 59  CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
            IKEVN VVEIPATTTRILLNHFKWDKEKLMER+YDGDQE
Sbjct: 61  SIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQE 100

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322797457|gb|EFZ19528.1| hypothetical protein SINV_05140 [Solenopsis invicta]

 Score =  159 bits (402), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/100 (77%), Positives = 89/100 (89%), Gaps = 2/100 (2%)

Query: 1   MDSDEDTSY--VDSGNESSSDDIGYAMEVENQNPKDRQNDVEEFVFEVLSTEEIVQHMID 58
           MDS+E+T Y  VDSGNESS DD+ +AME+E+ NP++R  DV+E+ FEVLSTEEIVQHM+D
Sbjct: 1   MDSEEETLYDDVDSGNESSGDDVDFAMEIESGNPRERATDVDEYPFEVLSTEEIVQHMVD 60

Query: 59  CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
            IKEVN VVEIPATTTRILLNHFKWDKEKLMER+YDGDQE
Sbjct: 61  SIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQE 100

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485088|ref|XP_001607592.2| PREDICTED: E3 ubiquitin-protein ligase arih1l-like [Nasonia vitripennis]

 Score =  157 bits (397), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/100 (75%), Positives = 89/100 (89%), Gaps = 2/100 (2%)

Query: 1   MDSDEDTSY--VDSGNESSSDDIGYAMEVENQNPKDRQNDVEEFVFEVLSTEEIVQHMID 58
           MDS+E+T Y  VDSGNESS DD+ +AME+E+ NP++R ++ +E+ FEVLSTEEIVQHM+D
Sbjct: 1   MDSEEETLYDDVDSGNESSGDDVDFAMEIESNNPRERASEADEYPFEVLSTEEIVQHMVD 60

Query: 59  CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
            IKEVN VVEIPATTTRILLNHFKWDKEKLMER+YDGDQE
Sbjct: 61  TIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQE 100

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214633|gb|EFN89583.1| Protein ariadne-1 [Harpegnathos saltator]

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/100 (76%), Positives = 88/100 (88%), Gaps = 2/100 (2%)

Query: 1   MDSDEDTSY--VDSGNESSSDDIGYAMEVENQNPKDRQNDVEEFVFEVLSTEEIVQHMID 58
           MDS+E+T Y  VDSGNESS DD+ +AME+E  NP++R  DV+++ FEVLSTEEIVQHM+D
Sbjct: 1   MDSEEETIYDDVDSGNESSGDDVDFAMEIEPGNPRERATDVDDYPFEVLSTEEIVQHMVD 60

Query: 59  CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
            IKEVN VVEIPATTTRILLNHFKWDKEKLMER+YDGDQE
Sbjct: 61  SIKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQE 100

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016336|ref|XP_002428785.1| protein ariadne-1, putative [Pediculus humanus corporis] gi|212513470|gb|EEB16047.1| protein ariadne-1, putative [Pediculus humanus corporis]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/100 (74%), Positives = 87/100 (87%), Gaps = 2/100 (2%)

Query: 1   MDSDEDTSY--VDSGNESSSDDIGYAMEVENQNPKDRQNDVEEFVFEVLSTEEIVQHMID 58
           MD D +T Y  VDSGNESS DD+ +AMEVE+ NP++R  DV+++ FEVLSTEEIVQHM+D
Sbjct: 1   MDPDVETLYDDVDSGNESSGDDVDFAMEVESNNPRERPTDVDDYPFEVLSTEEIVQHMVD 60

Query: 59  CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
            IK+VN VVEIPATTTRILLNHFKWDKEKLMER+YDGDQ+
Sbjct: 61  SIKDVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQD 100

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48138658|ref|XP_396912.1| PREDICTED: protein ariadne-1 homolog [Apis mellifera] gi|380027774|ref|XP_003697593.1| PREDICTED: E3 ubiquitin-protein ligase arih1l-like [Apis florea]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 75/99 (75%), Positives = 87/99 (87%), Gaps = 1/99 (1%)

Query: 1  MDSDEDT-SYVDSGNESSSDDIGYAMEVENQNPKDRQNDVEEFVFEVLSTEEIVQHMIDC 59
          MDS+E+T   VDSGNESS DD+ +AME+E  NP++R  DV+++ FEVLSTEEIVQHM+D 
Sbjct: 1  MDSEEETYDDVDSGNESSGDDVDFAMEIEAGNPRERSTDVDDYPFEVLSTEEIVQHMVDS 60

Query: 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
          IKEVN VVEIPATTTRILLNHFKWDKEKLMER+YDGDQE
Sbjct: 61 IKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQE 99

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849296|ref|XP_003700281.1| PREDICTED: E3 ubiquitin-protein ligase arih1l-like [Megachile rotundata]

 Score =  151 bits (382), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 74/99 (74%), Positives = 86/99 (86%), Gaps = 1/99 (1%)

Query: 1  MDSDEDT-SYVDSGNESSSDDIGYAMEVENQNPKDRQNDVEEFVFEVLSTEEIVQHMIDC 59
          MDS+E+    VDSGNESS DD+ +AME+E  NP++R  DV+++ FEVLSTEEIVQHM+D 
Sbjct: 1  MDSEEEMYDDVDSGNESSGDDVDFAMEIEAGNPRERATDVDDYPFEVLSTEEIVQHMVDS 60

Query: 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
          IKEVN VVEIPATTTRILLNHFKWDKEKLMER+YDGDQE
Sbjct: 61 IKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQE 99

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401290|ref|XP_003486110.1| PREDICTED: E3 ubiquitin-protein ligase arih1-like [Bombus impatiens]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/99 (74%), Positives = 86/99 (86%), Gaps = 1/99 (1%)

Query: 1  MDSDEDT-SYVDSGNESSSDDIGYAMEVENQNPKDRQNDVEEFVFEVLSTEEIVQHMIDC 59
          MDS+E+T   VDSGNESS DD+ +AME+E  N ++R  DV+++ FEVLSTEEIVQHM+D 
Sbjct: 1  MDSEEETYDDVDSGNESSGDDVDFAMEIEAGNLRERATDVDDYPFEVLSTEEIVQHMVDS 60

Query: 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
          IKEVN VVEIPATTTRILLNHFKWDKEKLMER+YDGDQE
Sbjct: 61 IKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQE 99

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720568|ref|XP_003398706.1| PREDICTED: e3 ubiquitin-protein ligase ARIH1-like isoform 1 [Bombus terrestris] gi|340720570|ref|XP_003398707.1| PREDICTED: e3 ubiquitin-protein ligase ARIH1-like isoform 2 [Bombus terrestris] gi|340720572|ref|XP_003398708.1| PREDICTED: e3 ubiquitin-protein ligase ARIH1-like isoform 3 [Bombus terrestris]

 Score =  149 bits (376), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/99 (74%), Positives = 86/99 (86%), Gaps = 1/99 (1%)

Query: 1  MDSDEDT-SYVDSGNESSSDDIGYAMEVENQNPKDRQNDVEEFVFEVLSTEEIVQHMIDC 59
          MDS+E+T   VDSGNESS DD+ +AME+E  N ++R  DV+++ FEVLSTEEIVQHM+D 
Sbjct: 1  MDSEEETYDDVDSGNESSGDDVDFAMEIEAGNLRERATDVDDYPFEVLSTEEIVQHMVDS 60

Query: 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
          IKEVN VVEIPATTTRILLNHFKWDKEKLMER+YDGDQE
Sbjct: 61 IKEVNTVVEIPATTTRILLNHFKWDKEKLMERFYDGDQE 99

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
FB|FBgn0017418	503	ari-1 "ariadne" [Drosophila me	0.753	0.194	0.504	4.4e-22
RGD|1308131	381	Arih1 "ariadne homolog, ubiqui	0.453	0.154	0.644	1.5e-21
UNIPROTKB|A2VEA3	555	ARIH1 "E3 ubiquitin-protein li	0.453	0.106	0.644	2.9e-21
UNIPROTKB|Q9Y4X5	557	ARIH1 "E3 ubiquitin-protein li	0.453	0.105	0.644	2.9e-21
ZFIN|ZDB-GENE-030131-5213	527	arih1 "ariadne ubiquitin-conju	0.453	0.111	0.661	3.5e-21
ZFIN|ZDB-GENE-040426-2395	533	arih1l "ariadne homolog, ubiqu	0.492	0.120	0.630	3.6e-21
MGI|MGI:1344363	555	Arih1 "ariadne ubiquitin-conju	0.453	0.106	0.644	1.6e-20
UNIPROTKB|B1H1E4	529	arih1 "E3 ubiquitin-protein li	0.453	0.111	0.644	3.3e-20
UNIPROTKB|Q32NS4	529	arih1 "E3 ubiquitin-protein li	0.453	0.111	0.644	5.3e-20
UNIPROTKB|F1PG97	554	ARIH1 "Uncharacterized protein	0.446	0.104	0.644	5.8e-20

FB|FBgn0017418 ari-1 "ariadne" [Drosophila melanogaster (taxid:7227)]

 Score = 263 (97.6 bits), Expect = 4.4e-22, P = 4.4e-22
 Identities = 52/103 (50%), Positives = 73/103 (70%)

Query:     1 MDSDEDTSY---VDSGNESSSDD--IGYAMEVENQNPKDRQNDVEEFVFEVLSTEEIVQH 55
             MDSD D  +   VDSGN SS DD    + MEV+  +  DRQ D +++ ++VL+T+EIVQH
Sbjct:     1 MDSDNDNDFCDNVDSGNVSSGDDGDDDFGMEVDLPSSADRQMDQDDYQYKVLTTDEIVQH 60

Query:    56 MIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
               + I E N ++++P  TTRILLNHFKWDKEKL+E+Y+D + +
Sbjct:    61 QREIIDEANLLLKLPTPTTRILLNHFKWDKEKLLEKYFDDNTD 103

GO:0005737 "cytoplasm" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

RGD|1308131 Arih1 "ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 224 (83.9 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
 Identities = 38/59 (64%), Positives = 52/59 (88%)

Query:    40 EEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
             E++ +EVL+ E+I+QHM++CI+EVN V++ PAT TRILL+HF WDKEKLMERY+DG+ E
Sbjct:    95 EDYRYEVLTAEQILQHMVECIREVNEVIQNPATITRILLSHFNWDKEKLMERYFDGNLE 153

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA;ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

UNIPROTKB|A2VEA3 ARIH1 "E3 ubiquitin-protein ligase ARIH1" [Bos taurus (taxid:9913)]

 Score = 224 (83.9 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
 Identities = 38/59 (64%), Positives = 52/59 (88%)

Query:    40 EEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
             E++ +EVL+ E+I+QHM++CI+EVN V++ PAT TRILL+HF WDKEKLMERY+DG+ E
Sbjct:    95 EDYRYEVLTAEQILQHMVECIREVNEVIQNPATITRILLSHFNWDKEKLMERYFDGNLE 153

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q9Y4X5 ARIH1 "E3 ubiquitin-protein ligase ARIH1" [Homo sapiens (taxid:9606)]

 Score = 224 (83.9 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
 Identities = 38/59 (64%), Positives = 52/59 (88%)

Query:    40 EEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
             E++ +EVL+ E+I+QHM++CI+EVN V++ PAT TRILL+HF WDKEKLMERY+DG+ E
Sbjct:    97 EDYRYEVLTAEQILQHMVECIREVNEVIQNPATITRILLSHFNWDKEKLMERYFDGNLE 155

GO:0019787 "small conjugating protein ligase activity" evidence=TAS

GO:0000151 "ubiquitin ligase complex" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0005829 "cytosol" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

ZFIN|ZDB-GENE-030131-5213 arih1 "ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 228 (85.3 bits), Expect = 3.5e-21, Sum P(2) = 3.5e-21
 Identities = 39/59 (66%), Positives = 52/59 (88%)

Query:    38 DVEEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGD 96
             D E++ FEVL+ E+I+QHM++CI+EVN V++ PAT TRILL+HF WDKEKLMERY+DG+
Sbjct:    65 DEEDYRFEVLTAEQILQHMVECIREVNEVIQNPATITRILLSHFNWDKEKLMERYFDGN 123

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-2395 arih1l "ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 like" [Danio rerio (taxid:7955)]

 Score = 230 (86.0 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
 Identities = 41/65 (63%), Positives = 55/65 (84%)

Query:    32 PKDRQNDVEEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMER 91
             P   Q D E++ FEVL+TE+I+QHM++CI++VN V++ PAT TRILL+HF WDKEKLMER
Sbjct:    66 PGPGQED-EDYRFEVLTTEQILQHMVECIRDVNEVIQNPATITRILLSHFNWDKEKLMER 124

Query:    92 YYDGD 96
             Y+DG+
Sbjct:   125 YFDGN 129

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:1344363 Arih1 "ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 224 (83.9 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
 Identities = 38/59 (64%), Positives = 52/59 (88%)

Query:    40 EEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
             E++ +EVL+ E+I+QHM++CI+EVN V++ PAT TRILL+HF WDKEKLMERY+DG+ E
Sbjct:    95 EDYRYEVLTAEQILQHMVECIREVNEVIQNPATITRILLSHFNWDKEKLMERYFDGNLE 153

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IPI

GO:0008152 "metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|B1H1E4 arih1 "E3 ubiquitin-protein ligase arih1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 224 (83.9 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
 Identities = 38/59 (64%), Positives = 52/59 (88%)

Query:    40 EEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
             E++ +EVL+ E+I+QHM++CI+EVN V++ PAT TRILL+HF WDKEKLMERY+DG+ E
Sbjct:    69 EDYRYEVLTAEQILQHMVECIREVNEVIQNPATITRILLSHFNWDKEKLMERYFDGNLE 127

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

UNIPROTKB|Q32NS4 arih1 "E3 ubiquitin-protein ligase arih1" [Xenopus laevis (taxid:8355)]

 Score = 224 (83.9 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
 Identities = 38/59 (64%), Positives = 52/59 (88%)

Query:    40 EEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
             E++ +EVL+ E+I+QHM++CI+EVN V++ PAT TRILL+HF WDKEKLMERY+DG+ E
Sbjct:    69 EDYRYEVLTAEQILQHMVECIREVNEVIQNPATITRILLSHFNWDKEKLMERYFDGNLE 127

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

UNIPROTKB|F1PG97 ARIH1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 212 (79.7 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
 Identities = 38/59 (64%), Positives = 51/59 (86%)

Query:    40 EEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98
             E++ +EVL+ E+I+QHM +CI+EVN V++ PAT TRILL+HF WDKEKLMERY+DG+ E
Sbjct:    95 EDYRYEVLTAEQILQHM-ECIREVNEVIQNPATITRILLSHFNWDKEKLMERYFDGNLE 152

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y4X5	ARI1_HUMAN	6, ., 3, ., 2, ., -	0.6440	0.4538	0.1059	yes	N/A
Q9Z1K5	ARI1_MOUSE	6, ., 3, ., 2, ., -	0.6440	0.4538	0.1063	yes	N/A
A2VEA3	ARI1_BOVIN	6, ., 3, ., 2, ., -	0.6440	0.4538	0.1063	yes	N/A
B1H1E4	ARI1_XENTR	6, ., 3, ., 2, ., -	0.6379	0.4461	0.1096	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
KOG1815|consensus	444		98.95
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	98.04
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	92.73
smart00804	63	TAP_C C-terminal domain of vertebrate Tap protein.	92.56
PF03943	51	TAP_C: TAP C-terminal domain; InterPro: IPR005637	92.08
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	91.55
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	89.43
PF02845	42	CUE: CUE domain; InterPro: IPR003892 This domain m	86.63
smart00546	43	CUE Domain that may be involved in binding ubiquit	81.04

>KOG1815|consensus

Probab=98.95  E-value=1.3e-09  Score=93.57  Aligned_cols=77  Identities=30%  Similarity=0.456  Sum_probs=71.2

Q ss_pred             EecHHHHHHHHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCChhhHHHHcCCCCC---CcceeeeeecccC
Q psy7603          46 VLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSASTS---SGLVFSAVDFGSG  122 (130)
Q Consensus        46 vLs~~eI~~~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~~kvl~~aGl~~~---~~~v~~~~~~~~~  122 (130)
                      +|+.++|...|.+.|..|+++|++++.+|++||.||+|++++|+++|++ +++.++...|+...   .+.+.+..|+++-
T Consensus         2 vl~~~~~~~~~~~~i~~~~~~ls~~~~~~~~ll~~~~W~~~kl~~~~~~-~~~~~~~~~g~~~~~~~~~~~~c~ic~~~~   80 (444)
T KOG1815|consen    2 VLTPDDIAALMREDIIEVSDILSLSHAVARILLAHFCWNVEKLLEEWVE-DEETGCFFVGLLLWPKKKGDVQCGICVESY   80 (444)
T ss_pred             CCchHhhhHHhHhhHHHHHHhhcCCHHHHHHHHHhcCcchHHHHHHHHh-cCcchhhhccccccCCCCccccCCcccCCC
Confidence            6889999999999999999999999999999999999999999999999 99999999997654   6778888888876


Q ss_pred             C
Q psy7603         123 G  123 (130)
Q Consensus       123 ~  123 (130)
                      .
T Consensus        81 ~   81 (444)
T KOG1815|consen   81 D   81 (444)
T ss_pred             c
Confidence            4

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=98.04  E-value=1.2e-05  Score=48.32  Aligned_cols=40  Identities=20%  Similarity=0.344  Sum_probs=35.1

Q ss_pred             HHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCCh
Q psy7603          57 IDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQ   97 (130)
Q Consensus        57 ~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~   97 (130)
                      ++.|.+.++|+++++..|+-+|..++||.++-+..||+ ++
T Consensus         1 ~e~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~-~~   40 (43)
T PF14555_consen    1 DEKIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFD-DG   40 (43)
T ss_dssp             HHHHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHH-SS
T ss_pred             CHHHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHh-CC
Confidence            36789999999999999999999999999999999999 54

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=92.73  E-value=0.4  Score=27.34  Aligned_cols=33  Identities=9%  Similarity=0.167  Sum_probs=28.1

Q ss_pred             HHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHH
Q psy7603          57 IDCIKEVNNVVEIPATTTRILLNHFKWDKEKLME   90 (130)
Q Consensus        57 ~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE   90 (130)
                      .+.|+++.+. |.++..|+.=|++.+||.++.++
T Consensus         3 ~~~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~   35 (37)
T PF00627_consen    3 EEKVQQLMEM-GFSREQAREALRACNGNVERAVD   35 (37)
T ss_dssp             HHHHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHH
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHH
Confidence            3568888888 99999999999999999998765

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>smart00804 TAP_C C-terminal domain of vertebrate Tap protein

Probab=92.56  E-value=0.66  Score=30.15  Aligned_cols=42  Identities=12%  Similarity=0.336  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          53 VQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        53 ~~~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      ...+.+.|..++..+++...-++.+|..-+||.++.+..|-+
T Consensus         9 ~~~q~~~v~~~~~~Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~   50 (63)
T smart00804        9 SPEQQEMVQAFSAQTGMNAEYSQMCLEDNNWDYERALKNFTE   50 (63)
T ss_pred             CHHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            346778899999999999999999999999999999998887

The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.

>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1)

Probab=92.08  E-value=0.11  Score=32.26  Aligned_cols=38  Identities=11%  Similarity=0.323  Sum_probs=33.5

Q ss_pred             HHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          57 IDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        57 ~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      ++.|..++...++.+.-|+..|...+||-++.+..|..
T Consensus         1 q~mv~~~s~~Tgmn~~~s~~CL~~n~Wd~~~A~~~F~~   38 (51)
T PF03943_consen    1 QEMVQQFSQQTGMNLEWSQKCLEENNWDYERALQNFEE   38 (51)
T ss_dssp             HHHHHHHHHHCSS-CCHHHHHHHHTTT-CCHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            35789999999999999999999999999999999988

Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.

>cd00194 UBA Ubiquitin Associated domain

Probab=91.55  E-value=0.78  Score=25.86  Aligned_cols=35  Identities=11%  Similarity=0.158  Sum_probs=28.8

Q ss_pred             HHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHh
Q psy7603          58 DCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYY   93 (130)
Q Consensus        58 e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~   93 (130)
                      +.|+++.+ +|.+...|+.-|+..+||.++.++-.+
T Consensus         3 ~~v~~L~~-mGf~~~~~~~AL~~~~~d~~~A~~~L~   37 (38)
T cd00194           3 EKLEQLLE-MGFSREEARKALRATNNNVERAVEWLL   37 (38)
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence            34566666 599999999999999999999887655

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>smart00165 UBA Ubiquitin associated domain

Probab=89.43  E-value=1.4  Score=24.71  Aligned_cols=33  Identities=12%  Similarity=0.046  Sum_probs=26.5

Q ss_pred             HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHH
Q psy7603          59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERY   92 (130)
Q Consensus        59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y   92 (130)
                      .|+++.+. |.++..|+.-|+..+||.++.++-.
T Consensus         4 ~v~~L~~m-Gf~~~~a~~aL~~~~~d~~~A~~~L   36 (37)
T smart00165        4 KIDQLLEM-GFSREEALKALRAANGNVERAAEYL   36 (37)
T ss_pred             HHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHH
Confidence            45555554 9999999999999999999887643

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=86.63  E-value=2.7  Score=24.46  Aligned_cols=37  Identities=8%  Similarity=0.254  Sum_probs=30.7

Q ss_pred             HHHHHHhhhh-CCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          58 DCIKEVNNVV-EIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        58 e~I~~V~~iL-~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      +.|..+.+++ ++++...+..|+.+++|++..++...+
T Consensus         3 ~~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~   40 (42)
T PF02845_consen    3 EMVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE   40 (42)
T ss_dssp             HHHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            4577788887 689999999999999999999887664

CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=81.04  E-value=7.3  Score=22.63  Aligned_cols=38  Identities=5%  Similarity=0.218  Sum_probs=31.3

Q ss_pred             HHHHHHHhhhh-CCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          57 IDCIKEVNNVV-EIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        57 ~e~I~~V~~iL-~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      .+.|..+.+++ ++++..++..|+.++.|++..++...+
T Consensus         3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~   41 (43)
T smart00546        3 DEALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLE   41 (43)
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            34566677776 689999999999999999999887765

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
1v92_A	46	NSFL1 cofactor P47; 3-helix bundle, recombination;	97.66
2dal_A	62	Protein KIAA0794; FAS associted factor 1, UBA-like	97.43
2dzl_A	66	Protein FAM100B; UBA-like domain, structural genom	96.96
2dam_A	67	ETEA protein; KIAA0887, UBA-like domain, structura	96.91
3e21_A	45	HFAF1, FAS-associated factor 1; UBA, alternative s	96.3
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	95.67
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	95.49
2di0_A	71	Activating signal cointegrator 1 complex subunit 2	94.91
3bq3_A	270	Defective in cullin neddylation protein 1; ubiquit	94.42
1oai_A	59	Nuclear RNA export factor; nuclear transport, nucl	93.87
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	93.12
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	93.09
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	93.04
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	92.74
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	92.07
2jp7_A	57	MRNA export factor MEX67; solution MEX67, UBA, tra	90.95
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	90.12
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	89.92
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	88.99
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	88.42
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	88.37
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	87.49
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	87.41
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	86.14
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	85.43
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	85.17
4ddj_A	83	Saposin-A, protein A; saposin fold, sphingolipid a	85.1
4gew_A	362	5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy	84.93
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	84.76
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	84.62
1ufz_A	83	Hypothetical protein BAB28515; HBS1-like domain, s	83.46
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	81.63
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	81.2
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	80.95
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	80.84
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	80.12

>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3

Probab=97.66  E-value=8.7e-05  Score=43.75  Aligned_cols=41  Identities=22%  Similarity=0.457  Sum_probs=37.6

Q ss_pred             HHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCCh
Q psy7603          56 MIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQ   97 (130)
Q Consensus        56 ~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~   97 (130)
                      +.+.|.+-++|+++++..|+-+|..++||.+.-+..||+ +|
T Consensus         5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~-~~   45 (46)
T 1v92_A            5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYE-DG   45 (46)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHH-TC
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHc-CC
Confidence            456799999999999999999999999999999999998 54

>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.43  E-value=0.00026  Score=44.86  Aligned_cols=42  Identities=10%  Similarity=0.182  Sum_probs=38.6

Q ss_pred             HHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCCh
Q psy7603          55 HMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQ   97 (130)
Q Consensus        55 ~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~   97 (130)
                      .|++.|.+-+.|++.++..|+.+|..++||.+.-+..||+ ++
T Consensus        14 ~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~-~~   55 (62)
T 2dal_A           14 ALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLD-GG   55 (62)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHH-SC
T ss_pred             cHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHc-CC
Confidence            4567799999999999999999999999999999999999 54

>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.96  E-value=0.0015  Score=41.89  Aligned_cols=39  Identities=15%  Similarity=0.319  Sum_probs=36.2

Q ss_pred             HHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCCh
Q psy7603          58 DCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQ   97 (130)
Q Consensus        58 e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~   97 (130)
                      +.|.+-+.|++.++..|+-.|..++||.+.-+..||+ ++
T Consensus        19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~-~~   57 (66)
T 2dzl_A           19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQ-ET   57 (66)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHT-CS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHc-CC
Confidence            4688899999999999999999999999999999999 53

>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.91  E-value=0.0016  Score=41.78  Aligned_cols=41  Identities=12%  Similarity=0.281  Sum_probs=37.4

Q ss_pred             HHHHHHHHhhhhC-CCHHHHHHHHHhCCCChHHHHHHHhcCCh
Q psy7603          56 MIDCIKEVNNVVE-IPATTTRILLNHFKWDKEKLMERYYDGDQ   97 (130)
Q Consensus        56 ~~e~I~~V~~iL~-vs~~~A~lLL~~fkWn~ekLlE~y~e~D~   97 (130)
                      +.+.|.+-+.|++ ..+..|+-+|..++||.+.-+..||+ +.
T Consensus        18 ~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~-~~   59 (67)
T 2dam_A           18 QTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLN-EQ   59 (67)
T ss_dssp             HHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHH-SS
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHh-CC
Confidence            4567999999999 89999999999999999999999999 53

>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}

Probab=96.30  E-value=0.0031  Score=37.75  Aligned_cols=39  Identities=13%  Similarity=0.156  Sum_probs=33.0

Q ss_pred             HHHHHHHHhhhhCCCH-HHHHHHHHhCCCChHHHHHHHhc
Q psy7603          56 MIDCIKEVNNVVEIPA-TTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        56 ~~e~I~~V~~iL~vs~-~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      ..+.|.+-++|+|+++ ..|+..|..++||.+.-+..||-
T Consensus         5 ~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~~   44 (45)
T 3e21_A            5 REMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVIP   44 (45)
T ss_dssp             HHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC--
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHcC
Confidence            3567889999999995 99999999999999998877763

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=95.67  E-value=0.028  Score=31.56  Aligned_cols=36  Identities=8%  Similarity=-0.033  Sum_probs=31.3

Q ss_pred             HHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHh
Q psy7603          57 IDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYY   93 (130)
Q Consensus        57 ~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~   93 (130)
                      .+.|+++++. |.++..|+.-|+..+||.++-++-+|
T Consensus         5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L~   40 (40)
T 1z96_A            5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFLL   40 (40)
T ss_dssp             HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence            4568899987 99999999999999999998887653

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=95.49  E-value=0.025  Score=39.48  Aligned_cols=39  Identities=10%  Similarity=0.159  Sum_probs=37.2

Q ss_pred             HHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          56 MIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        56 ~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      +.+.|..|++..+++...|+.-|...+||.++.++.+++
T Consensus        39 ~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lle   77 (104)
T 1wj7_A           39 FEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLE   77 (104)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            367899999999999999999999999999999999999

>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=94.91  E-value=0.08  Score=34.50  Aligned_cols=40  Identities=13%  Similarity=0.326  Sum_probs=37.1

Q ss_pred             HHHHHHHHHhhhh-CCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          55 HMIDCIKEVNNVV-EIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        55 ~~~e~I~~V~~iL-~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      .+.+.|..|.++| .+..+..+.+|.+|+=|.|+++...++
T Consensus        12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE   52 (71)
T 2di0_A           12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE   52 (71)
T ss_dssp             HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            5677899999998 799999999999999999999999999

>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3

Probab=93.87  E-value=0.23  Score=30.93  Aligned_cols=40  Identities=8%  Similarity=0.186  Sum_probs=37.4

Q ss_pred             HHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          55 HMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        55 ~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      .+.+.|..++...++...-+...|..-+||.++.+..|..
T Consensus         6 ~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~   45 (59)
T 1oai_A            6 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTH   45 (59)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            5667899999999999999999999999999999999988

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=93.12  E-value=0.23  Score=28.42  Aligned_cols=36  Identities=17%  Similarity=0.302  Sum_probs=31.5

Q ss_pred             HHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          58 DCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        58 e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      +.|+++.+ +|.++..|+.-|+..+||.++-++-.++
T Consensus         6 ~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~L~~   41 (43)
T 2g3q_A            6 LAVEELSG-MGFTEEEAHNALEKCNWDLEAATNFLLD   41 (43)
T ss_dssp             HHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence            55788887 5999999999999999999999887765

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=93.09  E-value=0.16  Score=32.99  Aligned_cols=36  Identities=14%  Similarity=0.097  Sum_probs=31.9

Q ss_pred             HHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          58 DCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        58 e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      +.|+++++ ++.+...|+.-|+.++||.++.++-.+.
T Consensus        31 e~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~Ll~   66 (73)
T 1vg5_A           31 EQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEILMS   66 (73)
T ss_dssp             HHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            45677777 5999999999999999999999999888

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=93.04  E-value=0.24  Score=29.40  Aligned_cols=37  Identities=8%  Similarity=0.014  Sum_probs=32.1

Q ss_pred             HHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          57 IDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        57 ~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      .+.|+++.+. |.++..|+.-|+..+||.++.++-.++
T Consensus         9 ~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~   45 (49)
T 1ify_A            9 ETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT   45 (49)
T ss_dssp             HHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            4557777765 999999999999999999999988877

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=92.74  E-value=0.12  Score=34.48  Aligned_cols=40  Identities=10%  Similarity=0.055  Sum_probs=33.2

Q ss_pred             HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCChhhH
Q psy7603          59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESS  100 (130)
Q Consensus        59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~~kv  100 (130)
                      .|+++.+ +|+++..|+.-|+..+||.++.++-.|. ++.++
T Consensus        32 ~I~~Lv~-MGF~~~~A~~AL~~t~gdve~A~e~L~s-h~~~i   71 (83)
T 1veg_A           32 SINQLVY-MGFDTVVAEAALRVFGGNVQLAAQTLAH-HGGSL   71 (83)
T ss_dssp             HHHHHHH-HSCCHHHHHHHHHHTTTCHHHHHHHHHH-HTSSC
T ss_pred             HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh-CCCCC
Confidence            4566665 4999999999999999999999999998 55443

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.07  E-value=0.15  Score=31.75  Aligned_cols=39  Identities=10%  Similarity=0.246  Sum_probs=33.1

Q ss_pred             HHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCChh
Q psy7603          58 DCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE   98 (130)
Q Consensus        58 e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~~   98 (130)
                      +.|+++.+ +|.+...|+.-|++.+||.++.++-.+. +++
T Consensus        11 ~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e~L~~-~~~   49 (63)
T 2dak_A           11 DCVTTIVS-MGFSRDQALKALRATNNSLERAVDWIFS-HID   49 (63)
T ss_dssp             HHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHHHHHH-HHH
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh-CCC
Confidence            34667777 6999999999999999999999999888 443

>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A

Probab=90.95  E-value=0.64  Score=28.74  Aligned_cols=41  Identities=12%  Similarity=0.274  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          54 QHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        54 ~~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      ..+.+.|..++...++...-+...|..-+||-++.+..|..
T Consensus         4 ~~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~   44 (57)
T 2jp7_A            4 PVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS   44 (57)
T ss_dssp             HHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            35678899999999999999999999999999999999987

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=90.12  E-value=0.66  Score=27.82  Aligned_cols=38  Identities=11%  Similarity=0.083  Sum_probs=31.7

Q ss_pred             HHHHHHhhhhCC-CHHHHHHHHHhCCCChHHHHHHHhcCCh
Q psy7603          58 DCIKEVNNVVEI-PATTTRILLNHFKWDKEKLMERYYDGDQ   97 (130)
Q Consensus        58 e~I~~V~~iL~v-s~~~A~lLL~~fkWn~ekLlE~y~e~D~   97 (130)
                      +.|+++.+. |. +...++.-|+..+||.++.++..+. +|
T Consensus        14 ~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~-~~   52 (52)
T 2jy5_A           14 QQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLG-SS   52 (52)
T ss_dssp             HHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTT-CC
T ss_pred             HHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHh-Cc
Confidence            456777764 88 8999999999999999999998887 53

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=89.92  E-value=0.85  Score=27.40  Aligned_cols=39  Identities=13%  Similarity=0.112  Sum_probs=33.2

Q ss_pred             HHHHHHHHHhhhhCC-CHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          55 HMIDCIKEVNNVVEI-PATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        55 ~~~e~I~~V~~iL~v-s~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      ...+.|+++.+. |. +...|+.-|+..+||.++.++..+.
T Consensus        10 ~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~   49 (53)
T 2knz_A           10 RFQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLG   49 (53)
T ss_dssp             HHHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            345667888875 78 9999999999999999999998887

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=88.99  E-value=0.87  Score=28.45  Aligned_cols=36  Identities=11%  Similarity=0.146  Sum_probs=31.8

Q ss_pred             HHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          58 DCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        58 e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      +.|+++.+ ++.+...|+.-|+..+||.++.++-.+.
T Consensus        11 ~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~   46 (63)
T 1wji_A           11 KALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLT   46 (63)
T ss_dssp             HHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            45777776 6999999999999999999999998888

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=88.42  E-value=0.84  Score=29.31  Aligned_cols=34  Identities=15%  Similarity=0.167  Sum_probs=29.7

Q ss_pred             HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      |+++.+ +|.+...|+.-|+..+||.++-++-.|+
T Consensus        33 v~~L~~-MGF~~~~a~~AL~~t~~nve~Ave~L~~   66 (73)
T 1wiv_A           33 VDTLLS-FGFAEDVARKALKASGGDIEKATDWVFN   66 (73)
T ss_dssp             HHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            555554 5999999999999999999999998888

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=88.37  E-value=0.44  Score=28.11  Aligned_cols=36  Identities=6%  Similarity=0.066  Sum_probs=31.3

Q ss_pred             HHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          58 DCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        58 e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      +.|+++.++ |.++..|+.-|...+||.+.-.+-.|+
T Consensus         6 eaI~rL~~m-GF~~~~a~~Al~a~~~n~e~A~~~Lf~   41 (47)
T 1dv0_A            6 EAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLS   41 (47)
T ss_dssp             HHHTTTTTT-TCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred             HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            456677654 999999999999999999999998888

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=87.49  E-value=1.2  Score=29.48  Aligned_cols=37  Identities=14%  Similarity=0.242  Sum_probs=33.1

Q ss_pred             HHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          57 IDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        57 ~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      .+.|+++.+ +++++..|+.-|+..+||.++.++-.|+
T Consensus        22 ~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ewL~~   58 (85)
T 2dkl_A           22 SRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMSALLE   58 (85)
T ss_dssp             HHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            566778877 5999999999999999999999999998

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=87.41  E-value=1.2  Score=27.79  Aligned_cols=35  Identities=6%  Similarity=0.107  Sum_probs=31.3

Q ss_pred             HHHHHhhhhCCCHHHHHHHHHhCCC-ChHHHHHHHhc
Q psy7603          59 CIKEVNNVVEIPATTTRILLNHFKW-DKEKLMERYYD   94 (130)
Q Consensus        59 ~I~~V~~iL~vs~~~A~lLL~~fkW-n~ekLlE~y~e   94 (130)
                      .|+++.+ +|.++..|+.-|++.+| |.++-++-.|+
T Consensus        22 ~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~   57 (64)
T 2cpw_A           22 ALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFS   57 (64)
T ss_dssp             HHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred             HHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4667776 69999999999999999 99999998888

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.14  E-value=1.5  Score=28.86  Aligned_cols=35  Identities=11%  Similarity=0.229  Sum_probs=31.0

Q ss_pred             HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      .|+++.+ +|.+...|+.-|++.+||.++-++-.|+
T Consensus        32 ~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~~   66 (83)
T 2dai_A           32 ALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIE   66 (83)
T ss_dssp             HHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            4666666 6999999999999999999999998888

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=85.43  E-value=1.7  Score=26.72  Aligned_cols=39  Identities=5%  Similarity=0.049  Sum_probs=31.3

Q ss_pred             HHHHHHHHHhhhhCCC-HHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          55 HMIDCIKEVNNVVEIP-ATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        55 ~~~e~I~~V~~iL~vs-~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      ...+.|+++.+. +.+ ...++.-|+..+||.++.++..|.
T Consensus        16 ~~~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~   55 (58)
T 1wr1_B           16 RYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN   55 (58)
T ss_dssp             HTHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            445567777775 775 667699999999999999999887

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=85.17  E-value=0.72  Score=28.02  Aligned_cols=36  Identities=8%  Similarity=0.018  Sum_probs=29.1

Q ss_pred             HHHHHHhhhhCCCHHH-HHHHHHhCCCChHHHHHHHhc
Q psy7603          58 DCIKEVNNVVEIPATT-TRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        58 e~I~~V~~iL~vs~~~-A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      +.|+++.+. |.+... ++.-|+..+||+++.++..|.
T Consensus        11 ~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~   47 (54)
T 2dah_A           11 VQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQ   47 (54)
T ss_dssp             HHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            346666655 886665 599999999999999999998

>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*

Probab=85.10  E-value=1.8  Score=27.40  Aligned_cols=56  Identities=4%  Similarity=0.073  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHhhhhCCC--HHHHHHHHHhCCCChHHHHHHHhcCChhhHHHHcCCCCC
Q psy7603          53 VQHMIDCIKEVNNVVEIP--ATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSASTS  109 (130)
Q Consensus        53 ~~~~~e~I~~V~~iL~vs--~~~A~lLL~~fkWn~ekLlE~y~e~D~~kvl~~aGl~~~  109 (130)
                      +..+...+.++.+.|..+  ...+..+...|.-..=.+++.... +|+.++...|+.++
T Consensus        26 ~~~I~~~l~~~C~~lp~~~~~~~C~~~v~~y~~~ii~~l~~~~~-~p~~vC~~l~lC~s   83 (83)
T 4ddj_A           26 EEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDIIKGEMS-RPGEVCSALNLCES   83 (83)
T ss_dssp             HHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHTTSCC-
T ss_pred             HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHccC-CHHHHHhHcCCCCc
Confidence            345667778899999987  689999999997666666666666 89999999999764

>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A

Probab=84.93  E-value=1.8  Score=34.69  Aligned_cols=36  Identities=17%  Similarity=0.434  Sum_probs=34.2

Q ss_pred             HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      .+.+-+.|.+.....|.-.|+.++|+.++-+.+||+
T Consensus        48 ~~~~f~~~~~~~~~~~~~~l~~~~w~~~~~~~~~~~   83 (362)
T 4gew_A           48 KLHEFAIITATDEAFAQSILQDVDWDLKKALDVFYG   83 (362)
T ss_dssp             HHHHHHHHHTCCHHHHHHHTTSSSSCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHhhcCchHHHHHHHHcC
Confidence            577889999999999999999999999999999996

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=84.76  E-value=1.9  Score=32.23  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=31.8

Q ss_pred             HHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          57 IDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        57 ~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      .+.|+++.+. |++...|+.-|+.++||.++.+|..++
T Consensus       164 eekV~~l~~M-Gf~~~~a~~AL~~~~wd~~~A~e~L~~  200 (201)
T 3k9o_A          164 TKKIENLCAM-GFDRNAVIVALSSKSWDVETATELLLS  200 (201)
T ss_dssp             HHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            5566666654 999999999999999999999998875

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=84.62  E-value=1.8  Score=33.91  Aligned_cols=37  Identities=16%  Similarity=0.227  Sum_probs=31.5

Q ss_pred             HHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          57 IDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        57 ~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      .+.|+++.+. |++...|+..|..++||.++.++..++
T Consensus       216 ~~~v~~l~~m-gf~~~~~~~al~~~nWd~~~A~e~L~~  252 (253)
T 3e46_A          216 TKKIENLCAA-GFDRNAVIVALSSKSWDVETATELLLS  252 (253)
T ss_dssp             HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence            4556666554 999999999999999999999998875

>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1

Probab=83.46  E-value=3.4  Score=27.49  Aligned_cols=47  Identities=17%  Similarity=0.316  Sum_probs=40.6

Q ss_pred             ecHHHHHHHHHHHHHHHhhhhC--CCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          47 LSTEEIVQHMIDCIKEVNNVVE--IPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        47 Ls~~eI~~~~~e~I~~V~~iL~--vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      |+.. =+.++..++.+|.+|||  ||....+....+++.|.+|.+..++.
T Consensus        26 Ls~~-d~arL~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~   74 (83)
T 1ufz_A           26 LSEI-DQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLE   74 (83)
T ss_dssp             CCHH-HHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CCHH-HHHHHHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHh
Confidence            5552 24578899999999998  89999999999999999999999887

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.63  E-value=3.4  Score=23.81  Aligned_cols=34  Identities=9%  Similarity=0.052  Sum_probs=29.0

Q ss_pred             HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      .|+++.+ +|.++..|+.-|+..+ |.++.++-.++
T Consensus        12 ~v~~L~~-MGF~~~~a~~AL~~~~-n~e~A~~~L~~   45 (47)
T 2ekk_A           12 QLQQLMD-MGFTREHAMEALLNTS-TMEQATEYLLT   45 (47)
T ss_dssp             HHHHHHH-HHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred             HHHHHHH-cCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence            4666666 6999999999999998 99999888776

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=81.20  E-value=2.1  Score=28.10  Aligned_cols=35  Identities=6%  Similarity=0.004  Sum_probs=29.6

Q ss_pred             HHHHHhhhhCCCHHHHHHHHHhC-CCChHHHHHHHhc
Q psy7603          59 CIKEVNNVVEIPATTTRILLNHF-KWDKEKLMERYYD   94 (130)
Q Consensus        59 ~I~~V~~iL~vs~~~A~lLL~~f-kWn~ekLlE~y~e   94 (130)
                      .|+++.+ +|.+...|+.-|++. +||.++-++-.|+
T Consensus        32 ~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ewL~~   67 (84)
T 1vek_A           32 IVAQLVS-MGFSQLHCQKAAINTSNAGVEEAMNWLLS   67 (84)
T ss_dssp             HHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            4666666 699999999888887 5999999998888

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.95  E-value=2.3  Score=27.25  Aligned_cols=36  Identities=14%  Similarity=0.103  Sum_probs=30.5

Q ss_pred             HHHHHHhhhhCCCHHHHHHHHHhCC-CChHHHHHHHhc
Q psy7603          58 DCIKEVNNVVEIPATTTRILLNHFK-WDKEKLMERYYD   94 (130)
Q Consensus        58 e~I~~V~~iL~vs~~~A~lLL~~fk-Wn~ekLlE~y~e   94 (130)
                      +.|+++.+ +|.+...|+.-|++.+ ||.++-++-.|+
T Consensus        11 ~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ewL~~   47 (74)
T 2dag_A           11 SVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVMS   47 (74)
T ss_dssp             HHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence            34666776 6999999999999888 689999999888

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=80.84  E-value=4.3  Score=23.62  Aligned_cols=38  Identities=5%  Similarity=0.044  Sum_probs=30.0

Q ss_pred             HHHHHHHHhhhhCCC-HHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          56 MIDCIKEVNNVVEIP-ATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        56 ~~e~I~~V~~iL~vs-~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      ..+.|+++.+. |.+ ...++.-|+..+||.++.++..|.
T Consensus         7 ~~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~   45 (46)
T 2bwb_A            7 YEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN   45 (46)
T ss_dssp             THHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            35567777765 875 556689999999999999998875

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=80.12  E-value=4.2  Score=26.26  Aligned_cols=36  Identities=11%  Similarity=0.062  Sum_probs=29.3

Q ss_pred             HHHHHHhhhhCCC-HHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          58 DCIKEVNNVVEIP-ATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        58 e~I~~V~~iL~vs-~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      +.|+++.++ |.+ ...++.-|+..+||+++.++..|.
T Consensus        31 ~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~   67 (74)
T 1vej_A           31 QELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLG   67 (74)
T ss_dssp             HHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            346666664 774 677799999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d1v92a_	46	NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {	97.6
d1oaia_	59	FG-binding, C-terminal domain of TAP {Human (Homo	93.17
d2di0a1	63	Activating signal cointegrator 1 complex subunit 2	89.98
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	89.72
d1ufza_	83	HBS1-like protein {Mouse (Mus musculus) [TaxId: 10	87.12
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	81.33

>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: NSFL1 (p97 ATPase) cofactor p47, UBA-like domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.60  E-value=5.5e-05  Score=44.12  Aligned_cols=40  Identities=20%  Similarity=0.441  Sum_probs=37.7

Q ss_pred             HHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          55 HMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        55 ~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      .+.+.|.+-++|+++++..|+-.|...+||.+.-+..||+
T Consensus         4 ~~~~lI~qF~~iTg~~~~~A~~~Le~~~w~Le~Ai~~yfe   43 (46)
T d1v92a_           4 ERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYE   43 (46)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHHh
Confidence            3567899999999999999999999999999999999998

>d1oaia_ a.5.2.3 (A:) FG-binding, C-terminal domain of TAP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: TAP-C domain-like
domain: FG-binding, C-terminal domain of TAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.19  Score=29.86  Aligned_cols=40  Identities=8%  Similarity=0.186  Sum_probs=37.1

Q ss_pred             HHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          55 HMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        55 ~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      .|.+.|..++...++...-++..|..-+||-++.+..|-.
T Consensus         6 ~Qq~mv~~~s~~T~mn~e~s~~cLe~~~Wd~~~A~~~F~~   45 (59)
T d1oaia_           6 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTH   45 (59)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            3678899999999999999999999999999999998877

>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Activating signal cointegrator 1 complex subunit 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.98  E-value=0.52  Score=28.42  Aligned_cols=40  Identities=13%  Similarity=0.326  Sum_probs=36.0

Q ss_pred             HHHHHHHHHhhhh-CCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          55 HMIDCIKEVNNVV-EIPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        55 ~~~e~I~~V~~iL-~vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      .+...|.+|..+| .+..+..+.+|.||+-|.|+++....+
T Consensus         5 el~s~I~qV~Dl~PdLG~GFi~~~L~~Y~~n~E~vI~~lLe   45 (63)
T d2di0a1           5 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE   45 (63)
T ss_dssp             HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            4677888999988 589999999999999999999999888

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.72  E-value=0.18  Score=27.87  Aligned_cols=37  Identities=8%  Similarity=0.012  Sum_probs=30.7

Q ss_pred             HHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHh
Q psy7603          56 MIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYY   93 (130)
Q Consensus        56 ~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~   93 (130)
                      .++.|+++.+ +|.+...|+.=|++.+||.++.++-.|
T Consensus         4 ~e~~i~~L~~-MGF~~~~a~~AL~~~~~N~e~A~~~Ll   40 (41)
T d1oqya1           4 YETMLTEIMS-MGYERERVVAALRASYNNPHRAVEYLL   40 (41)
T ss_dssp             HHHHHHHHHT-TTCCSHHHHHHHHHSCSSTTHHHHTTT
T ss_pred             HHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence            3556777777 799999999999999999999886443

>d1ufza_ a.5.9.1 (A:) HBS1-like protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: HBS1-like domain
family: HBS1-like domain
domain: HBS1-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.12  E-value=0.85  Score=28.84  Aligned_cols=47  Identities=17%  Similarity=0.362  Sum_probs=40.2

Q ss_pred             ecHHHHHHHHHHHHHHHhhhhC--CCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603          47 LSTEEIVQHMIDCIKEVNNVVE--IPATTTRILLNHFKWDKEKLMERYYD   94 (130)
Q Consensus        47 Ls~~eI~~~~~e~I~~V~~iL~--vs~~~A~lLL~~fkWn~ekLlE~y~e   94 (130)
                      |+.-+ +.++..++.+|.+|+|  ||..+..--..+|+.|.+|.+..+++
T Consensus        26 Ls~~d-~aRL~SCldqmR~VvGDsvpe~~lv~avlk~dydvekALd~vL~   74 (83)
T d1ufza_          26 LSEID-QARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLE   74 (83)
T ss_dssp             CCHHH-HHHHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             cCHHH-HHHHHHHHHHHHHHHcccCCHHHHHHHHHHccCCHHHHHHHHHh
Confidence            55433 4578899999999998  89998888899999999999998887

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.33  E-value=1.5  Score=26.57  Aligned_cols=37  Identities=14%  Similarity=0.176  Sum_probs=31.8

Q ss_pred             HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCCh
Q psy7603          59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQ   97 (130)
Q Consensus        59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~   97 (130)
                      .|+++.+ +|.+...|+.=|++.++|.++-++=.|+ ++
T Consensus        32 ~i~~L~~-MGF~~~~a~~AL~~~~~n~e~Av~~Lls-~~   68 (73)
T d1wiva_          32 SVDTLLS-FGFAEDVARKALKASGGDIEKATDWVFN-NS   68 (73)
T ss_dssp             HHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHH-SC
T ss_pred             HHHHHHh-cCCCHHHHHHHHHHcCCCHHHHHHHHHc-CC
Confidence            3566665 8999999999999999999999999888 53