Psyllid ID: psy7621

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
MCGHTFMIYQSFFYEIPPDLNPGGGGGCLYLNKTYRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTDAS
Secondary Structure (PSIPRED)
cccEEEEEEEEccccccccccccccccEEEEEcccccEEEEEEEcccccEEEEEEEEEEEEcccccEEEEEEEcEEEEEEccEEEEEEcEEcccEEEEEEEEccccEEEEEEEEEEccccEEEEEEEEHHHHHcccEEEEEEcEEEEEEEEEEEccEEEEEccccEEEEEEccccccEEEEEEccccEEEEEcccccEEEEEEccHHHHHHHHHHHHHHcccccccccEEccEEEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEEEEccccccccccccEEEEcccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEEccccccEEEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHcccEEccEEEEEEccEEEEEEEEEEEccEEEEEEccccEEEEEccccccEEEEEEccccEEEEEcccccEEEEEEccHHHHHHHHHHHHHccccccccccccccEEEEEEccEEEEccc
Coil and Loop (DISEMBL)
MCGHTFMIYQSffyeippdlnpgggggclylnktyrweetfdvdcdngtkKEIAAVRTVCSHISNMLKGVTKVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTstggfvcisFTGFLYKMRAAYahfpincvtsenNTLLEIRNFLGEKYIRrvkmapgvkvsnskqkdeliiegndienvsRSAALIQQSTTVKNKDIRKFLDGlyvsekttvvtdas
Flexible Loop (DISEMBL)
MCGHTFMIYQSFFYEIPPDLNPGGGGGCLYLNKTYRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRvkmapgvkvsnskqkdeliiegndienvsrsAALIqqsttvknkdirkfldglyvsekttvvtdas
Low Complexity Region (SEG)
MCGHTFMIYQSFFYEIPPDLNPGGGGGCLYLNKTYRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTDAS
Disordered region (IsUnstruct)
***************************CLYLNKTYRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVK*********LIIEGNDIENV**SAALIQQSTTVKNKDIRKFLDGLYVSEK********
Disordered Region (DISOPRED)
**GHTFMIYQSFFYEIPPDLNPGGGGGCLYLNKTYRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK*TV*****
Disordered Region (DISEMBL)
MCGHTFMIYQSFFYEIPPDLNPGGGGGCLYLNKTYRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTDAS
Disordered Region (DISPRO)
*CGHTFMIYQSFFYEIPPDLNPGGGGGCLYLNKTYRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVT***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCGHTFMIYQSFFYEIPPDLNPGGGGGCLYLNKTYRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTDAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	247	2.2.26 [Sep-21-2011]
P50882	190	60S ribosomal protein L9	yes	N/A	0.408	0.531	0.882	9e-46
Q963B7	190	60S ribosomal protein L9	N/A	N/A	0.417	0.542	0.836	2e-44
Q5IFJ7	192	60S ribosomal protein L9	N/A	N/A	0.404	0.520	0.782	1e-38
P32969	192	60S ribosomal protein L9	yes	N/A	0.404	0.520	0.782	1e-38
Q3SYR7	192	60S ribosomal protein L9	yes	N/A	0.404	0.520	0.782	2e-38
Q90YW0	192	60S ribosomal protein L9	N/A	N/A	0.425	0.546	0.726	7e-38
Q5R9Q7	192	60S ribosomal protein L9	yes	N/A	0.404	0.520	0.772	1e-37
P51410	192	60S ribosomal protein L9	yes	N/A	0.404	0.520	0.772	2e-37
P17077	192	60S ribosomal protein L9	yes	N/A	0.404	0.520	0.772	2e-37
Q95Y90	189	60S ribosomal protein L9	yes	N/A	0.408	0.534	0.627	7e-32

>sp|P50882|RL9_DROME 60S ribosomal protein L9 OS=Drosophila melanogaster GN=RpL9 PE=1 SV=2

 Score =  183 bits (465), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 90/102 (88%), Positives = 95/102 (93%), Gaps = 1/102 (0%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNS-KQKDELII 201
           GF YKMRA YAHFPINCVTSENNT++EIRNFLGEKYIRRV+MAPGV V NS  QKDELI+
Sbjct: 85  GFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIV 144

Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 243
           EGNDIE+VS SAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV
Sbjct: 145 EGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 186

Drosophila melanogaster (taxid: 7227)

>sp|Q963B7|RL9_SPOFR 60S ribosomal protein L9 OS=Spodoptera frugiperda GN=RpL9 PE=2 SV=1

 Score =  178 bits (452), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/104 (83%), Positives = 94/104 (90%), Gaps = 1/104 (0%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNS-KQKDELII 201
           GF YKMR+ YAHFPINCVT+E N+++EIRNFLGEKYIRRVKMAPGV V NS KQKDELII
Sbjct: 85  GFQYKMRSVYAHFPINCVTTEGNSVIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELII 144

Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
           EGN +E+VS SAALIQQSTTVKNKDIRKFLDGLYVSEKTTV  D
Sbjct: 145 EGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVEVD 188

Spodoptera frugiperda (taxid: 7108)

>sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 87/101 (86%), Gaps = 1/101 (0%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
           GF YKMR+ YAHFPIN V  EN +L+EIRNFLGEKYIRRV+M PGV  S S+ QKDELI+
Sbjct: 87  GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELIL 146

Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
           EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct: 147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187

Macaca fascicularis (taxid: 9541)

>sp|P32969|RL9_HUMAN 60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 87/101 (86%), Gaps = 1/101 (0%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
           GF YKMR+ YAHFPIN V  EN +L+EIRNFLGEKYIRRV+M PGV  S S+ QKDELI+
Sbjct: 87  GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELIL 146

Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
           EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct: 147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187

Homo sapiens (taxid: 9606)

>sp|Q3SYR7|RL9_BOVIN 60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 87/101 (86%), Gaps = 1/101 (0%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
           GF YKMR+ YAHFPIN V  EN +L+EIRNFLGEKYIRRV+M PGV  S S+ QKDELI+
Sbjct: 87  GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELIL 146

Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
           EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct: 147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187

Bos taurus (taxid: 9913)

>sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1

 Score =  157 bits (397), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 77/106 (72%), Positives = 88/106 (83%), Gaps = 1/106 (0%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVS-NSKQKDELII 201
           GF YKMR+ YAHFPIN V  E  +L+EIRNFLGEKYIRRV+M PGV  + ++ QKDEL++
Sbjct: 87  GFRYKMRSVYAHFPINVVIQETGSLVEIRNFLGEKYIRRVRMRPGVNCALSAAQKDELVL 146

Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTDAS 247
           EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TVV   S
Sbjct: 147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVVEPES 192

Ictalurus punctatus (taxid: 7998)

>sp|Q5R9Q7|RL9_PONAB 60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1

 Score =  156 bits (395), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 78/101 (77%), Positives = 86/101 (85%), Gaps = 1/101 (0%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
           GF YKMR+ YAHFPIN V  EN +L+EIRNFLGEKYIRRV+M PGV  S S+ QKDELI+
Sbjct: 87  GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELIL 146

Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
            GNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct: 147 GGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187

Pongo abelii (taxid: 9601)

>sp|P51410|RL9_MOUSE 60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2

 Score =  155 bits (393), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/101 (77%), Positives = 86/101 (85%), Gaps = 1/101 (0%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
           GF YKMR+ YAHFPIN V  EN +L+EIRNFLGEKYIRRV+M  GV  S S+ QKDELI+
Sbjct: 87  GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELIL 146

Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
           EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct: 147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187

Mus musculus (taxid: 10090)

>sp|P17077|RL9_RAT 60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1

 Score =  155 bits (392), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/101 (77%), Positives = 86/101 (85%), Gaps = 1/101 (0%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
           GF YKMR+ YAHFPIN V  EN +L+EIRNFLGEKYIRRV+M  GV  S S+ QKDELI+
Sbjct: 87  GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELIL 146

Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
           EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct: 147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187

Rattus norvegicus (taxid: 10116)

>sp|Q95Y90|RL9_CAEEL 60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1 SV=1

 Score =  137 bits (345), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 64/102 (62%), Positives = 81/102 (79%), Gaps = 1/102 (0%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVS-NSKQKDELII 201
           GF YKMR+ YAHFPIN    + N  +EIRNFLGEK +RRV +  GV  + ++ QKDE+++
Sbjct: 85  GFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVV 144

Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 243
           EGND++ VS++AA IQQST VK KDIRKFLDG+YVSEKTT+V
Sbjct: 145 EGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIV 186

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
110671494	189	putative ribosomal protein L9 [Diaphorin	0.425	0.555	1.0	5e-54
240848895	188	60S ribosomal protein L9-like [Acyrthosi	0.417	0.547	0.893	6e-48
383855254	190	PREDICTED: 60S ribosomal protein L9-like	0.417	0.542	0.875	9e-46
307187142	190	60S ribosomal protein L9 [Camponotus flo	0.417	0.542	0.875	1e-45
121543805	188	putative ribosomal protein L9 [Maconelli	0.417	0.547	0.854	1e-45
332021672	219	60S ribosomal protein L9 [Acromyrmex ech	0.417	0.470	0.875	1e-45
70909653	189	ribosomal protein L9e [Cicindela litorea	0.417	0.544	0.865	2e-45
307208757	190	60S ribosomal protein L9 [Harpegnathos s	0.417	0.542	0.875	2e-45
339283878	193	60S ribosomal protein L9 [Laodelphax str	0.417	0.533	0.846	3e-45
340715649	190	PREDICTED: 60S ribosomal protein L9-like	0.417	0.542	0.865	4e-45

>gi|110671494|gb|ABG81998.1| putative ribosomal protein L9 [Diaphorina citri]

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 105/105 (100%), Positives = 105/105 (100%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
           GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE
Sbjct: 85  GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 144

Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTDAS 247
           GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTDAS
Sbjct: 145 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTDAS 189

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240848895|ref|NP_001155561.1| 60S ribosomal protein L9-like [Acyrthosiphon pisum] gi|239788929|dbj|BAH71117.1| ACYPI004082 [Acyrthosiphon pisum]

 Score =  196 bits (499), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 92/103 (89%), Positives = 99/103 (96%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
           GFLYKMRA YAHFPINCVTSENN+L+EIRNFLGEKYIRRVKM+PGV ++NSKQKDELI+E
Sbjct: 85  GFLYKMRAVYAHFPINCVTSENNSLIEIRNFLGEKYIRRVKMSPGVTITNSKQKDELIVE 144

Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
           GNDIE VSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV +
Sbjct: 145 GNDIEKVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVQE 187

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855254|ref|XP_003703131.1| PREDICTED: 60S ribosomal protein L9-like [Megachile rotundata]

 Score =  189 bits (480), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 91/104 (87%), Positives = 98/104 (94%), Gaps = 1/104 (0%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNS-KQKDELII 201
           G+ YKMRA YAHFPINCVT+ENNT++EIRNFLGEKYIRRVKMAPGV V+NS KQKDELII
Sbjct: 85  GYQYKMRAVYAHFPINCVTTENNTVIEIRNFLGEKYIRRVKMAPGVTVTNSAKQKDELII 144

Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
           EGN +E+VSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV D
Sbjct: 145 EGNSLEDVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVQD 188

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187142|gb|EFN72386.1| 60S ribosomal protein L9 [Camponotus floridanus]

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/104 (87%), Positives = 98/104 (94%), Gaps = 1/104 (0%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNS-KQKDELII 201
           G+ YKMRA YAHFPINCVT+ENNT++EIRNFLGEKYIRRVKMAPGV V+NS KQKDELII
Sbjct: 85  GYQYKMRAVYAHFPINCVTTENNTVIEIRNFLGEKYIRRVKMAPGVTVANSGKQKDELII 144

Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
           EGN +E+VSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV D
Sbjct: 145 EGNSLEDVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLD 188

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|121543805|gb|ABM55567.1| putative ribosomal protein L9 [Maconellicoccus hirsutus]

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/103 (85%), Positives = 97/103 (94%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
           GF+YKMRA YAHFPINCVT+ENN+++EIRNFLGEKYIRRVKM+PGV V NSKQKDELI+E
Sbjct: 85  GFMYKMRAVYAHFPINCVTTENNSVIEIRNFLGEKYIRRVKMSPGVTVVNSKQKDELIVE 144

Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
           GNDIE VS SAA+IQQSTTV+NKDIRKFLDGLYVSEKTTVV D
Sbjct: 145 GNDIELVSGSAAMIQQSTTVRNKDIRKFLDGLYVSEKTTVVQD 187

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021672|gb|EGI62031.1| 60S ribosomal protein L9 [Acromyrmex echinatior]

 Score =  189 bits (479), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/104 (87%), Positives = 98/104 (94%), Gaps = 1/104 (0%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNS-KQKDELII 201
           G+ YKMRA YAHFPINCVT+ENNT++EIRNFLGEKYIRRVKMAPGV V+NS KQKDELII
Sbjct: 114 GYQYKMRAVYAHFPINCVTTENNTVIEIRNFLGEKYIRRVKMAPGVTVANSGKQKDELII 173

Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
           EGN +E+VSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV D
Sbjct: 174 EGNSLEDVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVQD 217

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909653|emb|CAJ17250.1| ribosomal protein L9e [Cicindela litorea]

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 90/104 (86%), Positives = 98/104 (94%), Gaps = 1/104 (0%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSN-SKQKDELII 201
           G+ YKMRA YAHFPINCVT+ENNT++EIRNFLGEKYIRRVKMAPGV V+N SKQKDELI+
Sbjct: 85  GYQYKMRAVYAHFPINCVTTENNTVIEIRNFLGEKYIRRVKMAPGVTVTNSSKQKDELIL 144

Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
           EGN +E+VSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV D
Sbjct: 145 EGNSLEDVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVED 188

Source: Cicindela litorea

Species: Cicindela litorea

Genus: Cicindela

Family: Carabidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208757|gb|EFN86034.1| 60S ribosomal protein L9 [Harpegnathos saltator]

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/104 (87%), Positives = 97/104 (93%), Gaps = 1/104 (0%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNS-KQKDELII 201
           G+ YKMRA YAHFPINCVT+ENNT++EIRNFLGEKYIRRVKMAPGV V NS KQKDELII
Sbjct: 85  GYQYKMRAVYAHFPINCVTTENNTVIEIRNFLGEKYIRRVKMAPGVTVVNSSKQKDELII 144

Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
           EGN +E+VSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV D
Sbjct: 145 EGNSLEDVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVQD 188

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|339283878|gb|AEJ38208.1| 60S ribosomal protein L9 [Laodelphax striatella]

 Score =  187 bits (476), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 88/104 (84%), Positives = 98/104 (94%), Gaps = 1/104 (0%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNS-KQKDELII 201
           GFLYKMRA YAHFPINCVT+ENN+++E+RNFLGEKYIRRV+MAPGV V+NS KQKDELI+
Sbjct: 89  GFLYKMRAVYAHFPINCVTTENNSVIEVRNFLGEKYIRRVRMAPGVTVTNSTKQKDELIV 148

Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
           EGN IE+VSRS ALIQQSTTVKNKDIRKFLDGLYVSEKT+VV D
Sbjct: 149 EGNSIEDVSRSVALIQQSTTVKNKDIRKFLDGLYVSEKTSVVQD 192

Source: Laodelphax striatella

Species: Laodelphax striatella

Genus: Laodelphax

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715649|ref|XP_003396322.1| PREDICTED: 60S ribosomal protein L9-like [Bombus terrestris] gi|350417930|ref|XP_003491650.1| PREDICTED: 60S ribosomal protein L9-like [Bombus impatiens]

 Score =  187 bits (475), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 90/104 (86%), Positives = 97/104 (93%), Gaps = 1/104 (0%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNS-KQKDELII 201
           G+ YKMRA YAHFPINCV +ENNT++EIRNFLGEKYIRRVKMAPGV V+NS KQKDELII
Sbjct: 85  GYQYKMRAVYAHFPINCVITENNTVIEIRNFLGEKYIRRVKMAPGVTVANSAKQKDELII 144

Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
           EGN +E+VSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV D
Sbjct: 145 EGNSLEDVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVQD 188

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
UNIPROTKB|Q3SYR7	192	RPL9 "60S ribosomal protein L9	0.404	0.520	0.782	1.4e-44
UNIPROTKB|E2R149	192	RPL9 "Uncharacterized protein"	0.404	0.520	0.782	1.4e-44
UNIPROTKB|H0Y9V9	189	RPL9 "60S ribosomal protein L9	0.404	0.529	0.782	1.4e-44
UNIPROTKB|P32969	192	RPL9 "60S ribosomal protein L9	0.404	0.520	0.782	1.4e-44
UNIPROTKB|I3LP78	192	RPL9 "Uncharacterized protein"	0.404	0.520	0.782	1.4e-44
UNIPROTKB|F1NS91	181	RPL9 "Uncharacterized protein"	0.404	0.552	0.762	4.7e-44
MGI|MGI:1298373	192	Rpl9 "ribosomal protein L9" [M	0.404	0.520	0.772	9.6e-44
RGD|62049	192	Rpl9 "ribosomal protein L9" [R	0.404	0.520	0.772	9.6e-44
UNIPROTKB|G3N2H8	191	G3N2H8 "Uncharacterized protei	0.404	0.523	0.772	9.6e-44
UNIPROTKB|G3MYL1	192	Bt.105281 "Uncharacterized pro	0.404	0.520	0.752	3.2e-43

UNIPROTKB|Q3SYR7 RPL9 "60S ribosomal protein L9" [Bos taurus (taxid:9913)]

 Score = 388 (141.6 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 79/101 (78%), Positives = 87/101 (86%)

Query:   143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
             GF YKMR+ YAHFPIN V  EN +L+EIRNFLGEKYIRRV+M PGV  S S+ QKDELI+
Sbjct:    87 GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELIL 146

Query:   202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
             EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct:   147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187

GO:0005840 "ribosome" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2R149 RPL9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 388 (141.6 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 79/101 (78%), Positives = 87/101 (86%)

Query:   143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
             GF YKMR+ YAHFPIN V  EN +L+EIRNFLGEKYIRRV+M PGV  S S+ QKDELI+
Sbjct:    87 GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELIL 146

Query:   202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
             EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct:   147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|H0Y9V9 RPL9 "60S ribosomal protein L9" [Homo sapiens (taxid:9606)]

 Score = 388 (141.6 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 79/101 (78%), Positives = 87/101 (86%)

Query:   143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
             GF YKMR+ YAHFPIN V  EN +L+EIRNFLGEKYIRRV+M PGV  S S+ QKDELI+
Sbjct:    84 GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELIL 143

Query:   202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
             EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct:   144 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 184

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|P32969 RPL9 "60S ribosomal protein L9" [Homo sapiens (taxid:9606)]

 Score = 388 (141.6 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 79/101 (78%), Positives = 87/101 (86%)

Query:   143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
             GF YKMR+ YAHFPIN V  EN +L+EIRNFLGEKYIRRV+M PGV  S S+ QKDELI+
Sbjct:    87 GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELIL 146

Query:   202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
             EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct:   147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0003723 "RNA binding" evidence=TAS

GO:0005840 "ribosome" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|I3LP78 RPL9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 388 (141.6 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 79/101 (78%), Positives = 87/101 (86%)

Query:   143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
             GF YKMR+ YAHFPIN V  EN +L+EIRNFLGEKYIRRV+M PGV  S S+ QKDELI+
Sbjct:    87 GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELIL 146

Query:   202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
             EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct:   147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1NS91 RPL9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 383 (139.9 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
 Identities = 77/101 (76%), Positives = 87/101 (86%)

Query:   143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
             GF YKMR+ YAHFPIN V  +N +L+EIRNFLGEKYIRRV+M PGV  + S+ QKDELI+
Sbjct:    76 GFRYKMRSVYAHFPINVVIQDNGSLVEIRNFLGEKYIRRVRMRPGVSCAVSQAQKDELIL 135

Query:   202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
             EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct:   136 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 176

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

MGI|MGI:1298373 Rpl9 "ribosomal protein L9" [Mus musculus (taxid:10090)]

 Score = 380 (138.8 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 78/101 (77%), Positives = 86/101 (85%)

Query:   143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
             GF YKMR+ YAHFPIN V  EN +L+EIRNFLGEKYIRRV+M  GV  S S+ QKDELI+
Sbjct:    87 GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELIL 146

Query:   202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
             EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct:   147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187

GO:0003735 "structural constituent of ribosome" evidence=IC

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IC

GO:0019843 "rRNA binding" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO;IDA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|62049 Rpl9 "ribosomal protein L9" [Rattus norvegicus (taxid:10116)]

 Score = 380 (138.8 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 78/101 (77%), Positives = 86/101 (85%)

Query:   143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
             GF YKMR+ YAHFPIN V  EN +L+EIRNFLGEKYIRRV+M  GV  S S+ QKDELI+
Sbjct:    87 GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELIL 146

Query:   202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
             EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct:   147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

UNIPROTKB|G3N2H8 G3N2H8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 379 (138.5 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 78/101 (77%), Positives = 85/101 (84%)

Query:   143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
             GF YKMR+ YAHFPIN V  EN +L EIRNFLGE YIRRV+M PGV  S S+ QKDELI+
Sbjct:    86 GFHYKMRSVYAHFPINVVIQENGSLAEIRNFLGETYIRRVRMRPGVACSVSQAQKDELIL 145

Query:   202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
             EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct:   146 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 186

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|G3MYL1 Bt.105281 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 375 (137.1 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
 Identities = 76/101 (75%), Positives = 86/101 (85%)

Query:   143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
             GF YKMR+ YAHFPIN V  EN +L+EI+NF GEKYIRRV+M PGV  S S+ Q+DELI+
Sbjct:    87 GFRYKMRSVYAHFPINVVIQENGSLVEIQNFWGEKYIRRVRMRPGVACSVSQAQRDELIL 146

Query:   202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
             EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct:   147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187

GO:0019843 "rRNA binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P05738	RL9A_YEAST	No assigned EC number	0.5094	0.4170	0.5392	yes	N/A
Q95Y90	RL9_CAEEL	No assigned EC number	0.6274	0.4089	0.5343	yes	N/A
P51410	RL9_MOUSE	No assigned EC number	0.7722	0.4048	0.5208	yes	N/A
O74905	RL9B_SCHPO	No assigned EC number	0.6336	0.4048	0.5291	yes	N/A
Q9SZX9	RL92_ARATH	No assigned EC number	0.625	0.4170	0.5309	yes	N/A
P50882	RL9_DROME	No assigned EC number	0.8823	0.4089	0.5315	yes	N/A
P49210	RL9_ORYSJ	No assigned EC number	0.6285	0.4210	0.5473	yes	N/A
Q5R9Q7	RL9_PONAB	No assigned EC number	0.7722	0.4048	0.5208	yes	N/A
Q3SYR7	RL9_BOVIN	No assigned EC number	0.7821	0.4048	0.5208	yes	N/A
P17077	RL9_RAT	No assigned EC number	0.7722	0.4048	0.5208	yes	N/A
P32969	RL9_HUMAN	No assigned EC number	0.7821	0.4048	0.5208	yes	N/A
P51401	RL9B_YEAST	No assigned EC number	0.5188	0.4170	0.5392	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	247
PTZ00027	190	PTZ00027, PTZ00027, 60S ribosomal protein L6; Prov	4e-50
PTZ00179	189	PTZ00179, PTZ00179, 60S ribosomal protein L9; Prov	2e-35
PRK05518	180	PRK05518, rpl6p, 50S ribosomal protein L6P; Review	1e-29
TIGR03653	170	TIGR03653, arch_L6P, archaeal ribosomal protein L6	6e-28
COG0097	178	COG0097, RplF, Ribosomal protein L6P/L9E [Translat	7e-20
pfam00347	76	pfam00347, Ribosomal_L6, Ribosomal protein L6	4e-15
PTZ00027	190	PTZ00027, PTZ00027, 60S ribosomal protein L6; Prov	1e-05
PRK05518	180	PRK05518, rpl6p, 50S ribosomal protein L6P; Review	3e-05
TIGR03653	170	TIGR03653, arch_L6P, archaeal ribosomal protein L6	3e-04

>gnl|CDD|240234 PTZ00027, PTZ00027, 60S ribosomal protein L6; Provisional

 Score =  162 bits (411), Expect = 4e-50
 Identities = 75/144 (52%), Positives = 90/144 (62%), Gaps = 14/144 (9%)

Query: 117 MSVEKSFIVVYQKYTSTGGFVCIS---------FTG----FLYKMRAAYAHFPINCVTSE 163
           +S +  +I V   + +     CI           TG    F YKMR  YAHFPIN   ++
Sbjct: 47  LSKDGKYIKVEMWFGTPSHLACIRTVCSHIKNMMTGVTKKFQYKMRLVYAHFPINSNITD 106

Query: 164 NNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQ-KDELIIEGNDIENVSRSAALIQQSTTV 222
           N   +EIRNFLGEK +R VKM PGV V  S+  KDE+I+ G D+E VSRSAALI QST V
Sbjct: 107 NGKTIEIRNFLGEKRVRTVKMLPGVVVEKSESVKDEIIVTGADLELVSRSAALIHQSTLV 166

Query: 223 KNKDIRKFLDGLYVSEKTTVVTDA 246
           +NKDIRKFLDG+YVSEK TV  D 
Sbjct: 167 RNKDIRKFLDGIYVSEKGTVDKDE 190

Length = 190

>gnl|CDD|140206 PTZ00179, PTZ00179, 60S ribosomal protein L9; Provisional

 Score =  124 bits (313), Expect = 2e-35
 Identities = 62/106 (58%), Positives = 75/106 (70%), Gaps = 5/106 (4%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSN---SKQKDEL 199
           GF +K+R AYAHFPI+   S  N L+EIRNFLGEK +RR  +A  VKV     SK KDEL
Sbjct: 85  GFRFKVRFAYAHFPIS--VSVENQLVEIRNFLGEKRVRRQVVADTVKVYRTDPSKVKDEL 142

Query: 200 IIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
           ++EGND+E VSR AA++ Q   VK KDIRKFLDG+YV  KT V  +
Sbjct: 143 VLEGNDLEQVSREAAVMHQLCLVKKKDIRKFLDGIYVQTKTNVEAE 188

Length = 189

>gnl|CDD|235496 PRK05518, rpl6p, 50S ribosomal protein L6P; Reviewed

 Score =  108 bits (273), Expect = 1e-29
 Identities = 44/97 (45%), Positives = 63/97 (64%), Gaps = 4/97 (4%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
           GF YK++  Y+HFP+  V  + N +  I NFLGEK  RR K+  GVKV      +++I+E
Sbjct: 84  GFEYKLKIVYSHFPMQ-VKVQGNEV-VIENFLGEKSPRRAKILGGVKVKVKG--EDVIVE 139

Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
           G D E+V ++AA I+Q+T +K  D R F DG+Y+ EK
Sbjct: 140 GIDKEDVGQTAANIEQATKIKGFDRRVFQDGIYIVEK 176

Length = 180

>gnl|CDD|234296 TIGR03653, arch_L6P, archaeal ribosomal protein L6P

 Score =  104 bits (261), Expect = 6e-28
 Identities = 46/97 (47%), Positives = 63/97 (64%), Gaps = 4/97 (4%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
           GF YKM+  Y+HFP+  V  E N +  I NFLGEK  RR K+  GVKV      +E+I+ 
Sbjct: 78  GFEYKMKVVYSHFPMQ-VKVEGNKV-VIENFLGEKAPRRAKIPGGVKVKVKG--EEVIVT 133

Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
           G D E+V ++AA I+Q+T +K +D R F DG+Y+ EK
Sbjct: 134 GIDKEDVGQTAANIEQATRIKGRDPRVFQDGIYIVEK 170

Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 170

>gnl|CDD|223175 COG0097, RplF, Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]

 Score = 83.4 bits (207), Expect = 7e-20
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 8/99 (8%)

Query: 142 TGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELII 201
            GF  K+      +    V         +  FLG  +   +++  G+ V       E+++
Sbjct: 81  EGFEKKLEIVGVGYRAQVVGGN------LELFLGYSHPVVIEIPEGITVEVPGP-TEIVV 133

Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRK-FLDGLYVSEK 239
           EG D E V + AA I+ +   +    +    DG Y+  K
Sbjct: 134 EGIDKELVGQVAANIRAARKPEPYKGKGIRYDGEYIRRK 172

Length = 178

>gnl|CDD|215872 pfam00347, Ribosomal_L6, Ribosomal protein L6

 Score = 68.0 bits (167), Expect = 4e-15
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 155 FPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAA 214
            P+    S +     +   LG K     ++ PGV V   ++   +I+ G D E V + AA
Sbjct: 1   IPVGVRVSIDGV--NLVLVLGPKGELTREIPPGVTVKV-EKITVIIVSGIDKEKVGQFAA 57

Query: 215 LIQQSTTVKNKDIRKFLDG 233
           LI           +    G
Sbjct: 58  LIGTYRAPIPNMGKGVSYG 76

Length = 76

>gnl|CDD|240234 PTZ00027, PTZ00027, 60S ribosomal protein L6; Provisional

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 16/25 (64%), Positives = 19/25 (76%)

Query: 48 GTKKEIAAVRTVCSHISNMLKGVTK 72
          GT   +A +RTVCSHI NM+ GVTK
Sbjct: 61 GTPSHLACIRTVCSHIKNMMTGVTK 85

Length = 190

>gnl|CDD|235496 PRK05518, rpl6p, 50S ribosomal protein L6P; Reviewed

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 43 VDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
          ++ +   KK  A V T  SHI NM+KGVT+
Sbjct: 54 IETEFARKKTKAMVGTFASHIKNMIKGVTE 83

Length = 180

>gnl|CDD|234296 TIGR03653, arch_L6P, archaeal ribosomal protein L6P

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 43 VDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
          ++ D   KK+ A V T  SHI NM+KGVT+
Sbjct: 48 IETDFARKKDKAMVGTYRSHIKNMIKGVTE 77

Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	247
PTZ00179	189	60S ribosomal protein L9; Provisional	100.0
PTZ00027	190	60S ribosomal protein L6; Provisional	100.0
PRK05518	180	rpl6p 50S ribosomal protein L6P; Reviewed	100.0
TIGR03653	170	arch_L6P archaeal ribosomal protein L6P. Members o	100.0
COG0097	178	RplF Ribosomal protein L6P/L9E [Translation, ribos	100.0
CHL00140	178	rpl6 ribosomal protein L6; Validated	100.0
PRK05498	178	rplF 50S ribosomal protein L6; Validated	100.0
TIGR03654	175	L6_bact ribosomal protein L6, bacterial type.	100.0
KOG3255|consensus	179		99.97
KOG3254|consensus	211		99.94
PF00347	77	Ribosomal_L6: Ribosomal protein L6; InterPro: IPR0	99.17
PF00347	77	Ribosomal_L6: Ribosomal protein L6; InterPro: IPR0	97.59

>PTZ00179 60S ribosomal protein L9; Provisional

Probab=100.00  E-value=2.6e-49  Score=334.54  Aligned_cols=165  Identities=48%  Similarity=0.678  Sum_probs=151.0

Q ss_pred             ecceeeeeCCCc---------EEeeCCeEEEEEEEe-----e---eCCEEEEEecCCChhhhhhHhhHHHHHhhhccccc
Q psy7621           9 YQSFFYEIPPDL---------NPGGGGGCLYLNKTY-----R---WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVT   71 (247)
Q Consensus         9 rgK~~ieIP~~v---------~v~Gp~G~L~l~~~~-----~---~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVt   71 (247)
                      ....|++||++|         +++||+|+|.++++.     .   .++.+.|.+++++++.+|+|||+||||+||++|||
T Consensus         4 ~~~~pI~IP~~V~V~i~~~~ItVkGpkG~Ls~~~~~~~~~i~i~~~~~~I~v~~~~~~kk~~al~Gt~rslI~NMI~GVt   83 (189)
T PTZ00179          4 KSQDTITIPEDVTVSVKDRIVTVKGKRGTLTKDLRHLQLDFRVNKKNRTFTAVRWFGSKIPNSTINTALSHVRNMITGVT   83 (189)
T ss_pred             cccccEeCCCCCEEEEeCCEEEEECCCcEEEEEcCCCCcEEEEEecCCEEEEEeCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            467899999998         699999999988773     1   35689999999999999999999999999999999


Q ss_pred             ccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEE
Q psy7621          72 KVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAA  151 (247)
Q Consensus        72 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~  151 (247)
                      +                                                                      ||.|+|+++
T Consensus        84 ~----------------------------------------------------------------------GF~k~L~iv   93 (189)
T PTZ00179         84 K----------------------------------------------------------------------GFRFKVRFA   93 (189)
T ss_pred             C----------------------------------------------------------------------CEEEEEEEE
Confidence            9                                                                      999999999


Q ss_pred             EeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCC---CCeEEEEeccHhHHhHHHHhhhcccccccccee
Q psy7621         152 YAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQ---KDELIIEGNDIENVSRSAALIQQSTTVKNKDIR  228 (247)
Q Consensus       152 ~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kq---kdeliIeG~D~e~V~~~AA~Iqq~~~~K~KdiR  228 (247)
                      |+||||++..+  |+.|+|+|||||||++.++||+||+|+.+++   +++|+|+|+|+|.|+|+||.|+|+|.+||||+|
T Consensus        94 gvgyp~ra~v~--g~~l~l~N~LG~sh~~~~~ip~gv~v~~~~~~~~k~~i~i~G~DKq~Vgq~AA~i~~~~~~~~~d~r  171 (189)
T PTZ00179         94 YAHFPISVSVE--NQLVEIRNFLGEKRVRRQVVADTVKVYRTDPSKVKDELVLEGNDLEQVSREAAVMHQLCLVKKKDIR  171 (189)
T ss_pred             EeCcceEEEEc--CCEEEEEecCCCCccEEEECCCCEEEEecCCcccCCEEEEEeCCHHHHHHHHHHHHHhhcccCCCcc
Confidence            99999999764  6669999999999999999999999999854   389999999999999999999999999999999


Q ss_pred             eeeceEEEeeeeeeecC
Q psy7621         229 KFLDGLYVSEKTTVVTD  245 (247)
Q Consensus       229 kFlDGiYvsek~~vqq~  245 (247)
                      +|+|||||++|+++..+
T Consensus       172 ~f~dgiy~~~k~~~~~~  188 (189)
T PTZ00179        172 KFLDGIYVQTKTNVEAE  188 (189)
T ss_pred             EeecCEEEEEeeccccc
Confidence            99999999999965543

>PTZ00027 60S ribosomal protein L6; Provisional

Probab=100.00  E-value=1.5e-48  Score=330.11  Aligned_cols=166  Identities=54%  Similarity=0.760  Sum_probs=153.1

Q ss_pred             ecceeeeeCCCc---------EEeeCCeEEEEEEEe-----e---eCCEEEEEecCCChhhhhhHhhHHHHHhhhccccc
Q psy7621           9 YQSFFYEIPPDL---------NPGGGGGCLYLNKTY-----R---WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVT   71 (247)
Q Consensus         9 rgK~~ieIP~~v---------~v~Gp~G~L~l~~~~-----~---~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVt   71 (247)
                      ....||+||++|         .++||+|+|.++++.     .   .++.+.|.+++++++.+|+|||+||||+||++|||
T Consensus         5 ~~~~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~~~~~~~~i~i~~~~~~i~v~~~~~~~k~~a~~Gt~rslI~NmI~GVt   84 (190)
T PTZ00027          5 FSSEKIRIPEGVTVTVKSRKVTVTGKYGELTRSFRHLPVDIKLSKDGKYIKVEMWFGTPSHLACIRTVCSHIKNMMTGVT   84 (190)
T ss_pred             ccCCCEecCCCCEEEEECCEEEEECCCceEEEEecCCCceEEEEeCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            367799999999         689999999998862     2   46789999999999999999999999999999999


Q ss_pred             ccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEE
Q psy7621          72 KVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAA  151 (247)
Q Consensus        72 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~  151 (247)
                      +                                                                      ||.|+|+++
T Consensus        85 ~----------------------------------------------------------------------Gf~~~Leiv   94 (190)
T PTZ00027         85 K----------------------------------------------------------------------KFQYKMRLV   94 (190)
T ss_pred             C----------------------------------------------------------------------CEEEEEEEE
Confidence            9                                                                      999999999


Q ss_pred             EeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCC-CCeEEEEeccHhHHhHHHHhhhccccccccceeee
Q psy7621         152 YAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQ-KDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKF  230 (247)
Q Consensus       152 ~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kq-kdeliIeG~D~e~V~~~AA~Iqq~~~~K~KdiRkF  230 (247)
                      |+|||++....++|+.|+++|+|||||++.++||+||+++++++ +++|+|+|+|+|.|+|+||.|+|+|.+||||.|+|
T Consensus        95 GvGyra~~~v~~~g~~L~l~N~LG~Sh~i~~~iP~gv~v~~~~~~~t~I~i~G~DKq~Vgq~AA~I~~~~~~~~~d~r~f  174 (190)
T PTZ00027         95 YAHFPINSNITDNGKTIEIRNFLGEKRVRTVKMLPGVVVEKSESVKDEIIVTGADLELVSRSAALIHQSTLVRNKDIRKF  174 (190)
T ss_pred             EeeeeEEEEEcCCCCEEEEEccCCCceeEEEECCCCeEEEeCCCCCCEEEEEeCCHHHHHHHHHHHHHHhcccCCCccEe
Confidence            99999986566789999999999999999999999999999864 58999999999999999999999999999999999


Q ss_pred             eceEEEeeeeeeec
Q psy7621         231 LDGLYVSEKTTVVT  244 (247)
Q Consensus       231 lDGiYvsek~~vqq  244 (247)
                      +|||||++|++..+
T Consensus       175 ~dgiy~~~k~~~~~  188 (190)
T PTZ00027        175 LDGIYVSEKGTVDK  188 (190)
T ss_pred             ecCEEEEEeeeecc
Confidence            99999999996543

>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed

Probab=100.00  E-value=1.1e-48  Score=329.07  Aligned_cols=160  Identities=39%  Similarity=0.562  Sum_probs=148.5

Q ss_pred             eecceeeeeCCCc---------EEeeCCeEEEEEEE-----ee-eCCEEEEEecCCChhhhhhHhhHHHHHhhhcccccc
Q psy7621           8 IYQSFFYEIPPDL---------NPGGGGGCLYLNKT-----YR-WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTK   72 (247)
Q Consensus         8 srgK~~ieIP~~v---------~v~Gp~G~L~l~~~-----~~-~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVtk   72 (247)
                      ++.+.|++||++|         +++||+|+|..+++     ++ .++.+.+..++++|+++|+|||+||||+||++|||+
T Consensus         4 ~~~~~pI~IP~~V~v~i~~~~v~VkGp~G~L~~~~~~~~v~i~~~~~~i~v~~~~~~kk~ra~~gt~rslI~NmI~GVt~   83 (180)
T PRK05518          4 AYIREEIEIPEGVTVEIEGLVVTVKGPKGELTRDFWYPGVTISVEDGKVVIETEFARKKTKAMVGTFASHIKNMIKGVTE   83 (180)
T ss_pred             ccccccEEcCCCCEEEEECCEEEEECCCeEEEEEecCCcEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHhhheeccc
Confidence            4578899999999         69999999999885     22 467899999999999999999999999999999999


Q ss_pred             cccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEEE
Q psy7621          73 VKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAAY  152 (247)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~~  152 (247)
                                                                                            ||.|+|+++|
T Consensus        84 ----------------------------------------------------------------------Gf~~~LelvG   93 (180)
T PRK05518         84 ----------------------------------------------------------------------GFEYKLKIVY   93 (180)
T ss_pred             ----------------------------------------------------------------------ceEEEEEEEe
Confidence                                                                                  9999999999


Q ss_pred             eecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccccccccceeeeec
Q psy7621         153 AHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLD  232 (247)
Q Consensus       153 ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~~~K~KdiRkFlD  232 (247)
                      +|||+++..+  |+.|+++|+|||||++.+++|+||++++++  ++|+|+|+|+|.|+|+||.|||++.+||||+|+|+|
T Consensus        94 vGypira~~~--g~~l~l~n~LG~Sh~v~~~iP~gV~v~~~~--t~I~i~GiDKq~Vgq~AA~Ir~~~~~~~kd~r~f~d  169 (180)
T PRK05518         94 SHFPMQVKVQ--GNEVVIENFLGEKSPRRAKILGGVKVKVKG--EDVIVEGIDKEDVGQTAANIEQATKIKGFDRRVFQD  169 (180)
T ss_pred             cCccEEEEEc--CCEEEEEeccccceeEEEeCCCCeEEEecC--CEEEEEeCCHHHHHHHHHHHHHhhcccCCCCCEeec
Confidence            9999998775  455999999999999999999999999984  899999999999999999999999999999999999


Q ss_pred             eEEEeeeee
Q psy7621         233 GLYVSEKTT  241 (247)
Q Consensus       233 GiYvsek~~  241 (247)
                      ||||+||+.
T Consensus       170 giyv~~k~~  178 (180)
T PRK05518        170 GIYIVEKEV  178 (180)
T ss_pred             CEEEEEecc
Confidence            999999974

>TIGR03653 arch_L6P archaeal ribosomal protein L6P

Probab=100.00  E-value=1.1e-47  Score=319.93  Aligned_cols=154  Identities=41%  Similarity=0.589  Sum_probs=143.3

Q ss_pred             eeeeeCCCc---------EEeeCCeEEEEEE-E----ee-eCCEEEEEecCCChhhhhhHhhHHHHHhhhcccccccccc
Q psy7621          12 FFYEIPPDL---------NPGGGGGCLYLNK-T----YR-WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKVKDC   76 (247)
Q Consensus        12 ~~ieIP~~v---------~v~Gp~G~L~l~~-~----~~-~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVtk~~~~   76 (247)
                      .|+.||++|         +++||+|+|.+++ +    +. .++.+.|.+++++|+.+|+|||+||||+||++|||+    
T Consensus         2 ~pI~IP~~V~v~i~~~~i~vkGp~G~L~~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~----   77 (170)
T TIGR03653         2 EEIEIPEGVSVTIEGNIVTVKGPKGEVTRELWYPGIEISVEDGKVVIETDFARKKDKAMVGTYRSHIKNMIKGVTE----   77 (170)
T ss_pred             ceEecCCCCEEEEeCCEEEEECCCeEEEEEEeCCcEEEEEeCCEEEEEeCCCCHHHHHHHHHHHHHHHhheeeccc----
Confidence            589999999         6899999999998 4    32 577899999999999999999999999999999999    


Q ss_pred             eeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEEEeecC
Q psy7621          77 AVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAAYAHFP  156 (247)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~~ahfp  156 (247)
                                                                                        ||.|+|+++|+|||
T Consensus        78 ------------------------------------------------------------------Gf~~~LeivGvGy~   91 (170)
T TIGR03653        78 ------------------------------------------------------------------GFEYKMKVVYSHFP   91 (170)
T ss_pred             ------------------------------------------------------------------CeEEEEEEEecccc
Confidence                                                                              99999999999999


Q ss_pred             ceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccccccccceeeeeceEEE
Q psy7621         157 INCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYV  236 (247)
Q Consensus       157 i~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~~~K~KdiRkFlDGiYv  236 (247)
                      +++..+  |+.|+++|+|||||++.++||+||++++++  ++|+|+|+|+|.|+++||.|||.+.+||||+|+|+||+||
T Consensus        92 ~ra~~~--g~~L~l~n~LG~Sh~i~~~iP~gI~v~~~~--~~I~i~G~DKq~Vgq~AA~Ir~~~~~~~~d~r~f~dgiy~  167 (170)
T TIGR03653        92 MQVKVE--GNKVVIENFLGEKAPRRAKIPGGVKVKVKG--EEVIVTGIDKEDVGQTAANIEQATRIKGRDPRVFQDGIYI  167 (170)
T ss_pred             EEEEEc--CCeEEEeeccccceeEEEECCCCeEEEecC--CEEEEEeCCHHHHHHHHHHHHHhhcccCCCccEeecCEEE
Confidence            988665  455999999999999999999999999985  3999999999999999999999999999999999999999


Q ss_pred             eee
Q psy7621         237 SEK  239 (247)
Q Consensus       237 sek  239 (247)
                      +||
T Consensus       168 ~~~  170 (170)
T TIGR03653       168 VEK  170 (170)
T ss_pred             EeC
Confidence            996

Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.

>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.4e-42  Score=291.87  Aligned_cols=158  Identities=25%  Similarity=0.264  Sum_probs=137.3

Q ss_pred             eee-cceeeeeCCCc---------EEeeCCeEEEEEEEee-----e-CCEEEEEecCCChhhhhhHhhHHHHHhhhcccc
Q psy7621           7 MIY-QSFFYEIPPDL---------NPGGGGGCLYLNKTYR-----W-EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGV   70 (247)
Q Consensus         7 Msr-gK~~ieIP~~v---------~v~Gp~G~L~l~~~~~-----~-~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGV   70 (247)
                      ||| ++.|+.+|++|         +++||+|+|..+++..     . ++.+.+..++. |+.+|+|||++|||+||++||
T Consensus         1 Msri~k~~i~~P~gV~V~i~~~~v~vkGpkGeL~~~~~~~~v~v~~~~~~~vv~~~~~-k~~~a~~Gt~rali~Nmv~GV   79 (178)
T COG0097           1 MSRIGKRPIVIPAGVTVSIEGQVVTVKGPKGELTREFHDNVVKVEVEDNILVVRPVDG-KRKRALHGTVRALINNMVKGV   79 (178)
T ss_pred             CCceeeccEecCCCeEEEEeccEEEEECCCcEEEEEecCcceEEEecCCEEEEeeccc-chhHHHHHHHHHHHHHHheec
Confidence            889 99999999998         6899999999998832     2 55577777777 666699999999999999999


Q ss_pred             cccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEE
Q psy7621          71 TKVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRA  150 (247)
Q Consensus        71 tk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~  150 (247)
                      |+                                                                      ||+|+|++
T Consensus        80 te----------------------------------------------------------------------Gf~~kL~i   89 (178)
T COG0097          80 TE----------------------------------------------------------------------GFEKKLEI   89 (178)
T ss_pred             cc----------------------------------------------------------------------ceEEEEEE
Confidence            99                                                                      99999999


Q ss_pred             EEeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccccccccceee-
Q psy7621         151 AYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRK-  229 (247)
Q Consensus       151 ~~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~~~K~KdiRk-  229 (247)
                      .|+|||+++  .  +..  |.||||||||+++++|+|+++++++ +|+|+|+|+|+|.|||+||.||+.|+.++.|-|. 
T Consensus        90 vgvgyra~v--~--g~~--l~l~LG~shp~~~~ip~gi~v~v~~-~t~I~v~GidKe~VGQ~AA~Ir~~r~pepykgKgi  162 (178)
T COG0097          90 VGVGYRAQV--V--GGN--LELFLGYSHPVVIEIPEGITVEVPG-PTEIVVEGIDKELVGQVAANIRAARKPEPYKGKGI  162 (178)
T ss_pred             EEecceeEE--e--ccE--EEEeecccCCeEEECCCCeEEEecC-CCEEEEEcCCHHHHhHHHHHHHhccCCCCCCCcce
Confidence            999999888  2  222  5679999999999999999999995 6999999999999999999999998655555555 


Q ss_pred             eeceEEEeeeeee
Q psy7621         230 FLDGLYVSEKTTV  242 (247)
Q Consensus       230 FlDGiYvsek~~v  242 (247)
                      |+||+||.+|.-.
T Consensus       163 ~ydge~I~~K~gK  175 (178)
T COG0097         163 RYDGEYIRRKEGK  175 (178)
T ss_pred             EEcCEEEEEeccc
Confidence            7999999998743

>CHL00140 rpl6 ribosomal protein L6; Validated

Probab=100.00  E-value=1.6e-39  Score=271.00  Aligned_cols=155  Identities=25%  Similarity=0.293  Sum_probs=139.7

Q ss_pred             eee-cceeeeeCCCc---------EEeeCCeEEEEEEEe-----eeCCEEEEEecCCChhhhhhHhhHHHHHhhhccccc
Q psy7621           7 MIY-QSFFYEIPPDL---------NPGGGGGCLYLNKTY-----RWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVT   71 (247)
Q Consensus         7 Msr-gK~~ieIP~~v---------~v~Gp~G~L~l~~~~-----~~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVt   71 (247)
                      ||| ++.|++||++|         +++||+|+|.++++.     ..++.+.+.+++++|+++|+|||+||||+||++|||
T Consensus         1 msrig~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~gt~~slI~Nmi~GVt   80 (178)
T CHL00140          1 MSRIGKLPIKIPDNVNVSIDDQIIKVKGPKGTLSRKIPDLITIEIQDNSLFVSKKDESKKARALHGLYRTLINNMVIGVS   80 (178)
T ss_pred             CCcccceeeecCCCCEEEEECCEEEEECCCEEEEEECCCCeEEEEeCCEEEEEcCCCCHHHHHHHHHHHHHHHHHHhhcc
Confidence            899 99999999998         699999999998872     246789999999999999999999999999999999


Q ss_pred             ccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEE
Q psy7621          72 KVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAA  151 (247)
Q Consensus        72 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~  151 (247)
                      +                                                                      ||.|+|+++
T Consensus        81 ~----------------------------------------------------------------------Gf~~~L~lv   90 (178)
T CHL00140         81 E----------------------------------------------------------------------GFEKKLELQ   90 (178)
T ss_pred             c----------------------------------------------------------------------CceEEEEEE
Confidence            9                                                                      999999999


Q ss_pred             EeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccc---ccccccee
Q psy7621         152 YAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQST---TVKNKDIR  228 (247)
Q Consensus       152 ~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~---~~K~KdiR  228 (247)
                      |+||++.+  +  |+.|++  +|||||++.++||+||+|++++ +++|+|+|+|+|.|+|+||.||+.+   ||||||||
T Consensus        91 GvGyr~~~--~--g~~l~l--~LG~sh~i~~~IP~gv~v~~~~-~t~I~i~G~dke~Vgq~AA~Ir~~r~pepYKGKGI~  163 (178)
T CHL00140         91 GVGYRAQV--Q--GKDLIL--NLGYSHPVKIKIPPGISVEVEN-NTNITIKGIDKELVGQFAAKIRSVRPPEPYKGKGIR  163 (178)
T ss_pred             EEEEEEEE--e--CCcEEE--EecCCeeEEEECCCCeEEEeCC-CCEEEEEECCHHHHHHHHHHHhccCCCCCcCCccEe
Confidence            99998655  3  344888  7999999999999999999984 5899999999999999999999996   79999998


Q ss_pred             eeeceEEEeeee
Q psy7621         229 KFLDGLYVSEKT  240 (247)
Q Consensus       229 kFlDGiYvsek~  240 (247)
                        .+|.++..|.
T Consensus       164 --y~~e~i~~K~  173 (178)
T CHL00140        164 --YKGEVIRRKA  173 (178)
T ss_pred             --ECCEEEEEec
Confidence              7777776654

>PRK05498 rplF 50S ribosomal protein L6; Validated

Probab=100.00  E-value=6.6e-39  Score=266.46  Aligned_cols=155  Identities=26%  Similarity=0.275  Sum_probs=138.9

Q ss_pred             eee-cceeeeeCCCc---------EEeeCCeEEEEEEE----e-eeCCEEEEEecCCChhhhhhHhhHHHHHhhhccccc
Q psy7621           7 MIY-QSFFYEIPPDL---------NPGGGGGCLYLNKT----Y-RWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVT   71 (247)
Q Consensus         7 Msr-gK~~ieIP~~v---------~v~Gp~G~L~l~~~----~-~~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVt   71 (247)
                      ||| ++.+++||++|         .|+||+|+|..+++    + ..++.+.+.+++++|+++|+|||+||||+||++|||
T Consensus         1 ms~ig~~~I~IP~~V~v~~~~~~v~vkGp~G~l~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~gt~~s~I~Nmi~GVt   80 (178)
T PRK05498          1 MSRIGKKPIAIPAGVEVTINGNVVTVKGPKGELSRTLNPDVTVKVEDNEITVTRPDDSKKARALHGTTRALINNMVVGVT   80 (178)
T ss_pred             CCcccccceecCCCCEEEEECCEEEEECCCEEEEEEcCCCeEEEEECCEEEEEcCCCCHHHHHHHHHHHHHHHHHhhhcC
Confidence            899 99999999999         69999999999887    2 257789999999999999999999999999999999


Q ss_pred             ccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEE
Q psy7621          72 KVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAA  151 (247)
Q Consensus        72 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~  151 (247)
                      +                                                                      ||.|+|+++
T Consensus        81 ~----------------------------------------------------------------------Gf~~~L~lv   90 (178)
T PRK05498         81 E----------------------------------------------------------------------GFEKKLEIV   90 (178)
T ss_pred             C----------------------------------------------------------------------CeEEEEEEE
Confidence            9                                                                      999999999


Q ss_pred             EeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccc---ccccccee
Q psy7621         152 YAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQST---TVKNKDIR  228 (247)
Q Consensus       152 ~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~---~~K~KdiR  228 (247)
                      |+||++++  +  |+.|++  +|||||++.++||+||+|++++ +++|+|+|+|+|.|+++||.||+.+   ||||||||
T Consensus        91 Gvgyrv~~--~--g~~l~l--~LG~sh~i~~~Ip~gv~v~~~~-~t~I~i~G~dke~Vg~~AA~Ir~~r~pe~YkgkGi~  163 (178)
T PRK05498         91 GVGYRAQV--K--GKKLNL--SLGYSHPVEYEIPEGITVEVPK-PTEIVVKGIDKQLVGQVAAEIRSYRPPEPYKGKGIR  163 (178)
T ss_pred             eEEEEEEE--e--CCeEEE--EecCCEEEEEECCCCeEEEeCC-CCEEEEEECCHHHHHHHHHHHhccCCCCCccCCcEe
Confidence            99997544  4  445888  7999999999999999999974 5899999999999999999999986   79999997


Q ss_pred             eeeceEEEeeee
Q psy7621         229 KFLDGLYVSEKT  240 (247)
Q Consensus       229 kFlDGiYvsek~  240 (247)
                        .+|.++--|.
T Consensus       164 --~~~e~i~~K~  173 (178)
T PRK05498        164 --YAGEVVRRKE  173 (178)
T ss_pred             --ECCEEEEEec
Confidence              6777776554

>TIGR03654 L6_bact ribosomal protein L6, bacterial type

Probab=100.00  E-value=1.6e-37  Score=257.98  Aligned_cols=152  Identities=24%  Similarity=0.262  Sum_probs=134.6

Q ss_pred             ee-cceeeeeCCCc---------EEeeCCeEEEEEEE----ee-eCCEEEEEecCCChhhhhhHhhHHHHHhhhcccccc
Q psy7621           8 IY-QSFFYEIPPDL---------NPGGGGGCLYLNKT----YR-WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTK   72 (247)
Q Consensus         8 sr-gK~~ieIP~~v---------~v~Gp~G~L~l~~~----~~-~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVtk   72 (247)
                      || ++.|++||++|         +++||+|+|.++++    +. .++.+.+.+++++|+++|+|||+||||+||++|||+
T Consensus         1 s~ig~~~I~IP~~V~v~~~~~~v~v~Gp~G~l~~~l~~~i~i~~~~~~i~v~~~~~~kk~~a~~gt~~s~i~Nmi~GVt~   80 (175)
T TIGR03654         1 SRIGKKPIAIPAGVEVTIDGNVVTVKGPKGELSRTLHPGVTVKVEDGQLTVSRPNDSKEARALHGTTRALINNMVIGVSE   80 (175)
T ss_pred             CcccccceecCCCcEEEEeCCEEEEEcCCeEEEEEcCCCeEEEEECCEEEEEecCCCHHHHHHHHHHHHHHHHHhheecc
Confidence            45 89999999999         69999999999986    22 467899999999999999999999999999999999


Q ss_pred             cccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEEE
Q psy7621          73 VKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAAY  152 (247)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~~  152 (247)
                                                                                            ||.|+|+++|
T Consensus        81 ----------------------------------------------------------------------Gf~~~L~lvG   90 (175)
T TIGR03654        81 ----------------------------------------------------------------------GFEKKLEIVG   90 (175)
T ss_pred             ----------------------------------------------------------------------CcEEEEEEEE
Confidence                                                                                  9999999999


Q ss_pred             eecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccc---cccccceee
Q psy7621         153 AHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQST---TVKNKDIRK  229 (247)
Q Consensus       153 ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~---~~K~KdiRk  229 (247)
                      +||++.+  +  |+.|++  +|||||++.+++|+||+|++++ +++|+|+|+|+|.|+++||.||+.+   |||||||| 
T Consensus        91 vgyrv~~--~--g~~l~l--~LG~sh~i~~~Ip~~v~v~~~~-~t~I~i~G~dke~Vgq~AA~Ir~~r~pepYKgkGi~-  162 (175)
T TIGR03654        91 VGYRAQL--Q--GKKLNL--SLGYSHPVEYEIPEGITVEVPK-PTEIVVKGIDKQLVGQVAAEIRAFRKPEPYKGKGIR-  162 (175)
T ss_pred             EEEEEEE--e--CCeEEE--EecCceeEEEECCCCeEEEeCC-CCEEEEEECCHHHHHHHHHHHhccCCCCCcCCCcEe-
Confidence            9997544  4  445888  7999999999999999999985 5899999999999999999999986   79999998 


Q ss_pred             eeceEEEee
Q psy7621         230 FLDGLYVSE  238 (247)
Q Consensus       230 FlDGiYvse  238 (247)
                       .+|.++--
T Consensus       163 -~~~e~I~~  170 (175)
T TIGR03654       163 -YAGEVVRR  170 (175)
T ss_pred             -ECCEEEEE
Confidence             55555543

>KOG3255|consensus

Probab=99.97  E-value=7.3e-32  Score=229.47  Aligned_cols=158  Identities=54%  Similarity=0.775  Sum_probs=145.6

Q ss_pred             eeecceeeeeCCCc---------EEeeCCeEEEEEEE-----ee-eCC---EEEEEecCCChhhhhhHhhHHHHHhhhcc
Q psy7621           7 MIYQSFFYEIPPDL---------NPGGGGGCLYLNKT-----YR-WEE---TFDVDCDNGTKKEIAAVRTVCSHISNMLK   68 (247)
Q Consensus         7 MsrgK~~ieIP~~v---------~v~Gp~G~L~l~~~-----~~-~~~---~~~V~~~~~~kk~~a~~gTv~S~I~NMik   68 (247)
                      .|+.+..+.||+++         +++||+|.|.....     .. +..   .+.++.|.+.++..|..+|.+|||.||++
T Consensus         3 ~Ilsn~tv~iPe~v~it~k~~v~~v~gprgtl~~d~~hi~~~~~~~~~~~~~ik~~~~~~~Rk~va~l~t~~s~ien~i~   82 (179)
T KOG3255|consen    3 TILSNQTVHIPENVDITLKGHVVIVKGPRGTLWRDFNHINVELSLLGKKKKRLKIDKWWGTRKGVACLRTVVSHIENCIK   82 (179)
T ss_pred             eEEeceEEecCCCceEEEeeEEEEEeCCCcceeccccccchhhhhhcchhhhhhhhhhhccchhHHHHHHHHHHHHHHHh
Confidence            36689999999999         69999999998776     11 222   48899999999999999999999999999


Q ss_pred             cccccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEE
Q psy7621          69 GVTKVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKM  148 (247)
Q Consensus        69 GVtk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykm  148 (247)
                      |||-                                                                      ||.|||
T Consensus        83 gvt~----------------------------------------------------------------------~~i~k~   92 (179)
T KOG3255|consen   83 GVTI----------------------------------------------------------------------GFIYKM   92 (179)
T ss_pred             cchH----------------------------------------------------------------------HHHHHh
Confidence            9999                                                                      999999


Q ss_pred             EEEEeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEec-CCCCeEEEEeccHhHHhHHHHhhhccccccccce
Q psy7621         149 RAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNS-KQKDELIIEGNDIENVSRSAALIQQSTTVKNKDI  227 (247)
Q Consensus       149 r~~~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~-kqkdeliIeG~D~e~V~~~AA~Iqq~~~~K~Kdi  227 (247)
                      |+.|+|||+|.+..+|++..+|+||||++.++++.|+||+....+ +.+|+++++|+|.|+|+++||+ +|.+++++|  
T Consensus        93 ~av~a~f~in~~~~~~~~s~~i~n~l~~k~~~~~~~~~Gv~~~~~~~~~~~i~~~~~~~~~vs~~~a~-~~~~~~~~~--  169 (179)
T KOG3255|consen   93 RAVYAHFPINTVIQENGKSEEIRNFLGEKLVRRVEMRPGVTIVRSSKVKDEIVLEGNDLELVSQSAAL-QQICTVKNK--  169 (179)
T ss_pred             hhHHhhccccceecCCCcchhhhhhhhhhccceEecCCCeEEeeehhcchhheecccchhhhhhHhHh-hccceehhh--
Confidence            999999999999999999999999999999999999999999987 8899999999999999999999 999999987  


Q ss_pred             eeeeceEEEeeeeee
Q psy7621         228 RKFLDGLYVSEKTTV  242 (247)
Q Consensus       228 RkFlDGiYvsek~~v  242 (247)
                         +|  ||+||++.
T Consensus       170 ---ld--yv~~k~~~  179 (179)
T KOG3255|consen  170 ---LD--YVSEKGTI  179 (179)
T ss_pred             ---cc--hhhhcccC
Confidence               88  99999863

>KOG3254|consensus

Probab=99.94  E-value=9.5e-27  Score=202.60  Aligned_cols=134  Identities=25%  Similarity=0.311  Sum_probs=117.6

Q ss_pred             CCCcEEeeCCeEEEEEEE----ee---eCCEEEEEec-CCChhhhhhHhhHHHHHhhhcccccccccceeeeehhhhhhh
Q psy7621          17 PPDLNPGGGGGCLYLNKT----YR---WEETFDVDCD-NGTKKEIAAVRTVCSHISNMLKGVTKVKDCAVKVQQSTLDLL   88 (247)
Q Consensus        17 P~~v~v~Gp~G~L~l~~~----~~---~~~~~~V~~~-~~~kk~~a~~gTv~S~I~NMikGVtk~~~~~~~~~~~~~~~~   88 (247)
                      -+++.++||.|+|.+..|    .+   .+..++.... ..+|++++||||+||++.||++|||+                
T Consensus        51 ge~l~vkGP~gel~l~~P~~l~L~~dkk~~g~~~~~k~~etkkqr~mwgt~R~l~~N~v~GVt~----------------  114 (211)
T KOG3254|consen   51 GEQLQVKGPHGELNLRFPNYLNLSNDKKKSGMDANIKKQETKKQRAMWGTFRALLANNVKGVTM----------------  114 (211)
T ss_pred             cCceEeeCCcceeeccCCccccccchhhhcceeeeecchhhHHHHHHHHHHHHHHhccchhhhh----------------
Confidence            455689999999999888    11   2344555544 45899999999999999999999999                


Q ss_pred             hhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEEEeecCceeeeccCCCee
Q psy7621          89 CEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAAYAHFPINCVTSENNTLL  168 (247)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~~ahfpi~~~~~en~~~l  168 (247)
                                                                            ||+.+++++++||++++    +|+.|
T Consensus       115 ------------------------------------------------------g~~k~l~lVGvGYRa~l----egk~l  136 (211)
T KOG3254|consen  115 ------------------------------------------------------GFLKILKLVGVGYRASL----EGKFL  136 (211)
T ss_pred             ------------------------------------------------------hhhheeeEEeeeeEEEe----cCceE
Confidence                                                                  99999999999999644    48889


Q ss_pred             EEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccc---cccccce
Q psy7621         169 EIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQST---TVKNKDI  227 (247)
Q Consensus       169 eirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~---~~K~Kdi  227 (247)
                      .++  ||++|++.+.+|++|.|.++ .++.|+++|+|++.|.||||.+|.+.   |||||||
T Consensus       137 ~lk--lG~S~~v~l~iP~~v~Vk~p-~ptsl~~~G~dKq~V~qFAAkvRsfkpPEPYKGKGI  195 (211)
T KOG3254|consen  137 HLK--LGYSHDVLLSIPTDVQVKNP-TPTSLVLRGIDKQKVTQFAAKVRSFKPPEPYKGKGI  195 (211)
T ss_pred             EEE--eccccceeecCCCceEEecC-CCCEEEEecccHHHHHHHHHHHhccCCCCCcCCCce
Confidence            996  99999999999999999999 58999999999999999999999984   8999965

>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.17  E-value=2.8e-11  Score=85.96  Aligned_cols=53  Identities=32%  Similarity=0.291  Sum_probs=47.2

Q ss_pred             EEeeCCeEEEEEEE----e---eeCCEEEEEecCCChhhhh---hHhhHHHHHhhhccccccc
Q psy7621          21 NPGGGGGCLYLNKT----Y---RWEETFDVDCDNGTKKEIA---AVRTVCSHISNMLKGVTKV   73 (247)
Q Consensus        21 ~v~Gp~G~L~l~~~----~---~~~~~~~V~~~~~~kk~~a---~~gTv~S~I~NMikGVtk~   73 (247)
                      +++||+|.|.+.++    +   ..++.+.+.++.+++++++   +|||+|||++||++||+++
T Consensus        15 ~v~G~~g~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~~~~a~~gt~rsli~n~i~GV~~G   77 (77)
T PF00347_consen   15 TVKGPKGELSRPIPPGVKVEIKVEDNKITVSVLSGNKKQKAFAAMIGTYRSLINNMIKGVTEG   77 (77)
T ss_dssp             EEESSSSEEEEEETTTEEEEEEEETTSEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHTE
T ss_pred             EEECCCEeEEEECCCCeeEEEEcCCCceEEEECcccHhHhhhHHhhccccccccCceeEECCC
Confidence            79999999999998    1   2467888999999999999   9999999999999999873

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....

>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.59  E-value=5.5e-05  Score=53.74  Aligned_cols=73  Identities=21%  Similarity=0.289  Sum_probs=54.5

Q ss_pred             cCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEec---CCCCeEEEEeccHhHHhHHHHhhhccccccccceeeee
Q psy7621         155 FPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNS---KQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFL  231 (247)
Q Consensus       155 fpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~---kqkdeliIeG~D~e~V~~~AA~Iqq~~~~K~KdiRkFl  231 (247)
                      +|.++.++.++..+.+   .|+++...+++|++|+++.+   .+......+++|++..  +||.++..+...+..|+-+.
T Consensus         1 IP~gV~v~~~~~~i~v---~G~~g~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~~--~~a~~gt~rsli~n~i~GV~   75 (77)
T PF00347_consen    1 IPEGVKVTIKGNIITV---KGPKGELSRPIPPGVKVEIKVEDNKITVSVLSGNKKQKA--FAAMIGTYRSLINNMIKGVT   75 (77)
T ss_dssp             SSTTCEEEEETTEEEE---ESSSSEEEEEETTTEEEEEEEETTSEEEEEEEESHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCcEEEE---ECCCEeEEEECCCCeeEEEEcCCCceEEEECcccHhHhh--hHHhhccccccccCceeEEC
Confidence            4677777777766654   89999999999999999854   3345667899999998  99999888765444444433


Q ss_pred             c
Q psy7621         232 D  232 (247)
Q Consensus       232 D  232 (247)
                      +
T Consensus        76 ~   76 (77)
T PF00347_consen   76 E   76 (77)
T ss_dssp             T
T ss_pred             C
Confidence            3

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	247
2zkr_e	192	Structure Of A Mammalian Ribosomal 60s Subunit With		1e-39
3izr_F	190	Localization Of The Large Subunit Ribosomal Protein		2e-32
3zf7_y	189	High-resolution Cryo-electron Microscopy Structure		4e-26
4a17_E	188	T.Thermophila 60s Ribosomal Subunit In Complex With		3e-24
1s1i_H	191	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		1e-23
3jyw_H	179	Structure Of The 60s Proteins For Eukaryotic Riboso		3e-23
3j21_F	184	Promiscuous Behavior Of Proteins In Archaeal Riboso		1e-16
3g4s_E	172	Co-Crystal Structure Of Tiamulin Bound To The Large		1e-12
1s72_E	178	Refined Crystal Structure Of The Haloarcula Marismo		1e-12
1ffk_1	177	Crystal Structure Of The Large Ribosomal Subunit Fr		1e-12
2cql_A	100	Solution Structure Of The N-Terminal Domain Of Huma		2e-04

>pdb|2ZKR|EE Chain e, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 192

Iteration: 1
 Score =  159 bits (403), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/101 (78%), Positives = 87/101 (86%), Gaps = 1/101 (0%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
           GF YKMR+ YAHFPIN V  EN +L+EIRNFLGEKYIRRV+M PGV  S S+ QKDELI+
Sbjct: 87  GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELIL 146
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
           EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct: 147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187

>pdb|3IZR|F Chain F, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 190

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 81/105 (77%), Gaps = 1/105 (0%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQ-KDELII 201
           G+ YKMR  YAHFPIN   + +NT +EIRNFLGEK +R+V M  GV +  S++ KDEL++
Sbjct: 86  GYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVL 145
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTDA 246
           +GNDIE VSRSAALI Q   VKNKDIRKFLDG+YVS+K T+  DA
Sbjct: 146 DGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITEDA 190

>pdb|3ZF7|YY Chain y, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 189

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/106 (58%), Positives = 75/106 (70%), Gaps = 5/106 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQ---KDEL 199
           GF +K+R AYAHFPI  VT EN  L+EIRNFLGEK +RR  +A  VKV  +     KDEL
Sbjct: 85  GFRFKVRFAYAHFPI-SVTVENQ-LVEIRNFLGEKRVRRQVVADDVKVYRTDAALVKDEL 142
Query: 200 IIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
           ++EGND+E VSR AA++ Q   VK KDIRKFLDG+YV  KT +  D
Sbjct: 143 VLEGNDLEQVSREAAVMHQLCLVKKKDIRKFLDGIYVQTKTNIEVD 188

>pdb|4A17|E Chain E, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 188

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/98 (51%), Positives = 75/98 (76%), Gaps = 1/98 (1%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNS-KQKDELII 201
           G+ +KM+ A+AHFPI    +++ + +EI++FLGEK IRR++  PGVK+S   ++K+ L +
Sbjct: 85  GYKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRKDEEKNTLTL 144
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
           +G D+ NVS++ ALI QS  VK KDIR+FLDG+YVS+K
Sbjct: 145 QGIDLNNVSQTCALIHQSCLVKEKDIRQFLDGIYVSDK 182

>pdb|1S1I|H Chain H, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 191

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 72/106 (67%), Gaps = 3/106 (2%)
Query: 143 GFLYKMRAAYAHFPINC--VTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQ-KDEL 199
           G+ YKMR  YAHFPIN   V  +    +E+RNFLG+K IR V +  GV +  S   KDE+
Sbjct: 85  GYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEI 144
Query: 200 IIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
           ++ GN +E+VS++AA +QQ   V+NKDIRKFLDG+YVS K  +  D
Sbjct: 145 VLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFITED 190

>pdb|3JYW|H Chain H, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 179

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/100 (53%), Positives = 70/100 (70%), Gaps = 3/100 (3%)
Query: 143 GFLYKMRAAYAHFPINC--VTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQ-KDEL 199
           G+ YKMR  YAHFPIN   V  +    +E+RNFLG+K IR V +  GV +  S   KDE+
Sbjct: 80  GYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEI 139
Query: 200 IIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
           ++ GN +E+VS++AA +QQ   V+NKDIRKFLDG+YVS K
Sbjct: 140 VLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHK 179

>pdb|3J21|F Chain F, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 184

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
           GF YK++  Y+HFPI+     +  ++E  NFLGEK  R+ K+ PGV V    Q  E+I+E
Sbjct: 85  GFTYKLKVVYSHFPISVKVQGDEVIIE--NFLGEKAPRKAKILPGVTVKVRGQ--EIIVE 140
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKT 240
           G D E V ++AA I+Q+T +   D R F DG+Y+ EK 
Sbjct: 141 GIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVEKA 178

>pdb|3G4S|E Chain E, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 172

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
           G+ Y M   Y+HFP+      +  ++E  NFLGEK  RR  +     V    +  EL + 
Sbjct: 79  GWEYGMEVFYSHFPMQVNVEGDEVVIE--NFLGEKAPRRTTIHGDTDVEIDGE--ELTVS 134
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
           G DIE V ++AA I+Q T + +KD+R F DG+Y++ K
Sbjct: 135 GPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 171

>pdb|1S72|E Chain E, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 178

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
           G+ Y M   Y+HFP+      +  ++E  NFLGEK  RR  +     V    +  EL + 
Sbjct: 80  GWEYGMEVFYSHFPMQVNVEGDEVVIE--NFLGEKAPRRTTIHGDTDVEIDGE--ELTVS 135
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
           G DIE V ++AA I+Q T + +KD+R F DG+Y++ K
Sbjct: 136 GPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 172

>pdb|1FFK|1 Chain 1, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 177

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
           G+ Y M   Y+HFP+      +  ++E  NFLGEK  RR  +     V    +  EL + 
Sbjct: 79  GWEYGMEVFYSHFPMQVNVEGDEVVIE--NFLGEKAPRRTTIHGDTDVEIDGE--ELTVS 134
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
           G DIE V ++AA I+Q T + +KD+R F DG+Y++ K
Sbjct: 135 GPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 171

>pdb|2CQL|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Ribosomal Protein L9 Length = 100

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 38 EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVT 71
          ++   VD   G +KE+A VRT+CSH+ NM+KGVT
Sbjct: 59 KKRLRVDKWWGNRKELATVRTICSHVQNMIKGVT 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	247
3u5e_H	191	L8, RP24, YL11, 60S ribosomal protein L9-A; transl	1e-48
3u5e_H	191	L8, RP24, YL11, 60S ribosomal protein L9-A; transl	1e-07
4a17_E	188	RPL9, 60S ribosomal protein L9; eukaryotic ribosom	3e-48
4a17_E	188	RPL9, 60S ribosomal protein L9; eukaryotic ribosom	1e-06
3iz5_F	190	60S ribosomal protein L9 (L6P); eukaryotic ribosom	4e-48
3iz5_F	190	60S ribosomal protein L9 (L6P); eukaryotic ribosom	5e-07
2zkr_e	192	60S ribosomal protein L9; protein-RNA complex, 60S	1e-47
2zkr_e	192	60S ribosomal protein L9; protein-RNA complex, 60S	5e-07
1vq8_E	178	50S ribosomal protein L6P; ribosome 50S, protein-p	9e-43
1vq8_E	178	50S ribosomal protein L6P; ribosome 50S, protein-p	1e-07
2cql_A	100	OK/SW-CL.103, 60S ribosomal protein L9; N-terminal	2e-08

>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 3jyw_H Length = 191

 Score =  157 bits (400), Expect = 1e-48
 Identities = 54/106 (50%), Positives = 71/106 (66%), Gaps = 3/106 (2%)

Query: 143 GFLYKMRAAYAHFPINCVTSEN--NTLLEIRNFLGEKYIRRVKMAPGVKVSNS-KQKDEL 199
           G+ YKMR  YAHFPIN    E      +E+RNFLG+K IR V +  GV +  S   KDE+
Sbjct: 85  GYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEI 144

Query: 200 IIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
           ++ GN +E+VS++AA +QQ   V+NKDIRKFLDG+YVS K  +  D
Sbjct: 145 VLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFITED 190

>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 3jyw_H Length = 191

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 43 VDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
          V   NG +K +AA+RTV S + NM+ GVTK
Sbjct: 55 VAVHNGGRKHVAALRTVKSLVDNMITGVTK 84

>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E Length = 188

 Score =  156 bits (397), Expect = 3e-48
 Identities = 50/104 (48%), Positives = 77/104 (74%), Gaps = 1/104 (0%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNS-KQKDELII 201
           G+ +KM+ A+AHFPI    +++ + +EI++FLGEK IRR++  PGVK+S   ++K+ L +
Sbjct: 85  GYKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRKDEEKNTLTL 144

Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
           +G D+ NVS++ ALI QS  VK KDIR+FLDG+YVS+K   + +
Sbjct: 145 QGIDLNNVSQTCALIHQSCLVKEKDIRQFLDGIYVSDKRLAMNE 188

>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E Length = 188

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 10/30 (33%), Positives = 20/30 (66%)

Query: 43 VDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
          +     ++KE A ++++ S I NM++GVT+
Sbjct: 55 LQIWQASRKERAVLQSIASQIKNMIRGVTE 84

>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 192

 Score =  155 bits (393), Expect = 1e-47
 Identities = 79/104 (75%), Positives = 87/104 (83%), Gaps = 1/104 (0%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
           GF YKMR+ YAHFPIN V  EN +L+EIRNFLGEKYIRRV+M PGV  S S+ QKDELI+
Sbjct: 87  GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELIL 146

Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
           EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV   
Sbjct: 147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQA 190

>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 192

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 18/30 (60%), Positives = 23/30 (76%)

Query: 43 VDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
          VD   G +KE+A VRT+CSH+ NM+KGVT 
Sbjct: 57 VDKWWGNRKELATVRTICSHVQNMIKGVTL 86

>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ... Length = 178

 Score =  142 bits (360), Expect = 9e-43
 Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 4/98 (4%)

Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
           G+ Y M   Y+HFP+      +   + I NFLGEK  RR  +     V      +EL + 
Sbjct: 80  GWEYGMEVFYSHFPMQVNVEGDE--VVIENFLGEKAPRRTTIHGDTDVE--IDGEELTVS 135

Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKT 240
           G DIE V ++AA I+Q T + +KD+R F DG+Y++ K 
Sbjct: 136 GPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP 173

>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ... Length = 178

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 43 VDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
          ++ D    K ++ + T  SHI NM  GVT+
Sbjct: 50 IESDEDNAKTMSTIGTFQSHIENMFHGVTE 79

>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1 Length = 100

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 18/30 (60%), Positives = 23/30 (76%)

Query: 43 VDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
          VD   G +KE+A VRT+CSH+ NM+KGVT 
Sbjct: 64 VDKWWGNRKELATVRTICSHVQNMIKGVTL 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	247
3iz5_F	190	60S ribosomal protein L9 (L6P); eukaryotic ribosom	100.0
3u5e_H	191	L8, RP24, YL11, 60S ribosomal protein L9-A; transl	100.0
4a17_E	188	RPL9, 60S ribosomal protein L9; eukaryotic ribosom	100.0
2zkr_e	192	60S ribosomal protein L9; protein-RNA complex, 60S	100.0
3j21_F	184	50S ribosomal protein L6P; archaea, archaeal, KINK	100.0
1vq8_E	178	50S ribosomal protein L6P; ribosome 50S, protein-p	100.0
3v2d_H	180	50S ribosomal protein L6; ribosome associated inhi	100.0
3r8s_G	176	50S ribosomal protein L6; protein biosynthesis, RN	100.0
1nkw_E	212	50S ribosomal protein L6; ribosome, large subunit,	100.0
1rl6_A	177	Protein (ribosomal protein L6); RNA-binding protei	100.0
2zjr_E	185	50S ribosomal protein L6; ribosome, large ribosoma	100.0
3bbo_I	223	Ribosomal protein L6; large ribosomal subunit, spi	100.0
2cql_A	100	OK/SW-CL.103, 60S ribosomal protein L9; N-terminal	99.65

>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H

Probab=100.00  E-value=5e-59  Score=393.47  Aligned_cols=168  Identities=45%  Similarity=0.683  Sum_probs=158.6

Q ss_pred             eecceeeeeCCCc---------EEeeCCeEEEEEEEe-------eeCCEEEEEecCCChhhhhhHhhHHHHHhhhccccc
Q psy7621           8 IYQSFFYEIPPDL---------NPGGGGGCLYLNKTY-------RWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVT   71 (247)
Q Consensus         8 srgK~~ieIP~~v---------~v~Gp~G~L~l~~~~-------~~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVt   71 (247)
                      ++++.|++||++|         +|+||+|+|.++++.       ..++.+.|+.++++|+++|+|||+||||+||++|||
T Consensus         4 i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt   83 (191)
T 3u5e_H            4 IQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVT   83 (191)
T ss_dssp             EEEEEEEECCTTCEEEEETTEEEEEETTEEEEEECTTTCCEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCcEEEEEecCCeEEEEECCCCHHHHHHHHHHHHHHHhheeeec
Confidence            5689999999998         699999999998862       137889999999999999999999999999999999


Q ss_pred             ccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEE
Q psy7621          72 KVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAA  151 (247)
Q Consensus        72 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~  151 (247)
                      +                                                                      ||.|+||++
T Consensus        84 ~----------------------------------------------------------------------Gf~~kL~lv   93 (191)
T 3u5e_H           84 K----------------------------------------------------------------------GYKYKMRYV   93 (191)
T ss_dssp             T----------------------------------------------------------------------CEEEEEEEE
T ss_pred             c----------------------------------------------------------------------CEEEEEEEE
Confidence            9                                                                      999999999


Q ss_pred             EeecCceeee--ccCCCeeEEecccCceeeEEEeCCCCeEEEecC-CCCeEEEEeccHhHHhHHHHhhhcccccccccee
Q psy7621         152 YAHFPINCVT--SENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAALIQQSTTVKNKDIR  228 (247)
Q Consensus       152 ~ahfpi~~~~--~en~~~leirnfLGek~~~~vkmp~GVkvs~~k-qkdeliIeG~D~e~V~~~AA~Iqq~~~~K~KdiR  228 (247)
                      |+||||++.+  +++|+.|+|+||||||||++++||+||+++.++ |+|+|+|+|+|+|.|||+||+|||+|++||||||
T Consensus        94 gvgyri~a~v~~~~~G~~l~l~n~LG~sh~v~~~ip~Gv~v~v~~~~kteIil~G~Dke~Vgq~AA~Irq~~~vk~kD~R  173 (191)
T 3u5e_H           94 YAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIR  173 (191)
T ss_dssp             CSSSCCEEEEECSSSCCEEEEECGGGCSSCEEEECCTTEEEEECTTSTTEEEEEESCHHHHHHHHHHHHHTTCCCSSCTT
T ss_pred             EEeeeEEEEEEEcCCCCEEEEEeccCCcccEEEECCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHHhhcccCCCccc
Confidence            9999999877  889999999999999999999999999999994 3799999999999999999999999999999999


Q ss_pred             eeeceEEEeeeeeeecC
Q psy7621         229 KFLDGLYVSEKTTVVTD  245 (247)
Q Consensus       229 kFlDGiYvsek~~vqq~  245 (247)
                      +||||||||||++++|+
T Consensus       174 ~FlDGiyv~ek~~~~~~  190 (191)
T 3u5e_H          174 KFLDGIYVSHKGFITED  190 (191)
T ss_dssp             TCCCEEEEEEEEESSSC
T ss_pred             EeecCeEEEEeeEEEec
Confidence            99999999999999886

>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E

Probab=100.00  E-value=4.4e-59  Score=393.05  Aligned_cols=168  Identities=39%  Similarity=0.677  Sum_probs=157.1

Q ss_pred             eecceeeeeCCCc---------EEeeCCeEEEEEEEe-----e--eCCEEEEEecCCChhhhhhHhhHHHHHhhhccccc
Q psy7621           8 IYQSFFYEIPPDL---------NPGGGGGCLYLNKTY-----R--WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVT   71 (247)
Q Consensus         8 srgK~~ieIP~~v---------~v~Gp~G~L~l~~~~-----~--~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVt   71 (247)
                      ++++.|++||++|         +|+||+|+|.++++.     .  .++.+.|+.++++|+++|+|||+||||+||++|||
T Consensus         4 i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt   83 (188)
T 4a17_E            4 LLTEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDIQKPTADNVKLQIWQASRKERAVLQSIASQIKNMIRGVT   83 (188)
T ss_dssp             EEEEEECCCCTTCEEEEETTEEEEEETTEEEEEECTTSCCEECCCBTTBCEEEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCeEEEEEccCCeEEEEECCCCHHHHHHHHHHHHHHHhheEeec
Confidence            6689999999999         699999999998852     2  46789999999999999999999999999999999


Q ss_pred             ccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEE
Q psy7621          72 KVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAA  151 (247)
Q Consensus        72 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~  151 (247)
                      +                                                                      ||.|+|+++
T Consensus        84 ~----------------------------------------------------------------------Gf~~kL~lv   93 (188)
T 4a17_E           84 E----------------------------------------------------------------------GYKFKMKLA   93 (188)
T ss_dssp             S----------------------------------------------------------------------CEEEEEEEE
T ss_pred             c----------------------------------------------------------------------CeEEEEEEE
Confidence            9                                                                      999999999


Q ss_pred             EeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecC-CCCeEEEEeccHhHHhHHHHhhhccccccccceeee
Q psy7621         152 YAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKF  230 (247)
Q Consensus       152 ~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~k-qkdeliIeG~D~e~V~~~AA~Iqq~~~~K~KdiRkF  230 (247)
                      |+||||++.++++|+.|+|+||||||||++++||+||+++.++ ++|+|+|+|+|+|.|||+||+|||+|++||||||+|
T Consensus        94 gvgyr~~~~v~~~G~~l~l~N~LG~sh~v~~~ip~gv~v~v~~~~k~eIil~G~Dke~Vgq~AA~Ir~~~~vk~kD~R~F  173 (188)
T 4a17_E           94 FAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRKDEEKNTLTLQGIDLNNVSQTCALIHQSCLVKEKDIRQF  173 (188)
T ss_dssp             CSSSCCEEEECSSSCEEEEECGGGCCCEEEEECCTTCEEECCTTSSSEEEEEESCHHHHHHHHHHHHHHTCCCSSCHHHH
T ss_pred             EEcccceEEEccCCCEEEEEeccCCcccEEEECCCCeEEEECCCCCCEEEEEEcCHHHHHHHHHHHHhhcccCCCcccEe
Confidence            9999999988889999999999999999999999999999994 359999999999999999999999999999999999


Q ss_pred             eceEEEeeeeeeecC
Q psy7621         231 LDGLYVSEKTTVVTD  245 (247)
Q Consensus       231 lDGiYvsek~~vqq~  245 (247)
                      |||||||||++++++
T Consensus       174 ~DGiyv~ek~~~~~~  188 (188)
T 4a17_E          174 LDGIYVSDKRLAMNE  188 (188)
T ss_dssp             CCEEEEEEEEECC--
T ss_pred             ecCeEEEEeEEEecC
Confidence            999999999999874

>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=6.9e-56  Score=374.13  Aligned_cols=170  Identities=60%  Similarity=0.859  Sum_probs=147.6

Q ss_pred             eecceeeeeCCCc---------EEeeCCeEEEEEEEe-e-----eCCE---EEEEecCCChhhhhhHhhHHHHHhhhccc
Q psy7621           8 IYQSFFYEIPPDL---------NPGGGGGCLYLNKTY-R-----WEET---FDVDCDNGTKKEIAAVRTVCSHISNMLKG   69 (247)
Q Consensus         8 srgK~~ieIP~~v---------~v~Gp~G~L~l~~~~-~-----~~~~---~~V~~~~~~kk~~a~~gTv~S~I~NMikG   69 (247)
                      +..+.|++||++|         +|+||+|+|.++++. .     .++.   +.|..++++|+++|+|||+||||+||++|
T Consensus         4 ~~~k~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~~v~i~~~~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~NmI~G   83 (192)
T 2zkr_e            4 ILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKG   83 (192)
T ss_dssp             ------CCCCTTCEEEEETTEEEEEETTEEEEEECCSSSCEEEEETTTTCEEEEECSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCcEEcCCCCEEEEeCCEEEEECCCeEEEEEeCCCCEEEEEecCceeEEEEEcCCCCHHHHHHHHHHHHHHhCEEEe
Confidence            3478999999998         699999999998873 2     3566   99999999999999999999999999999


Q ss_pred             ccccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEE
Q psy7621          70 VTKVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMR  149 (247)
Q Consensus        70 Vtk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr  149 (247)
                      ||+                                                                      ||.|+|+
T Consensus        84 Vt~----------------------------------------------------------------------Gf~~~L~   93 (192)
T 2zkr_e           84 VTL----------------------------------------------------------------------GFRYKMR   93 (192)
T ss_dssp             HHT----------------------------------------------------------------------CEEEEEE
T ss_pred             ecc----------------------------------------------------------------------CcEEEEE
Confidence            999                                                                      9999999


Q ss_pred             EEEeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCC-CCeEEEEeccHhHHhHHHHhhhcccccccccee
Q psy7621         150 AAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQ-KDELIIEGNDIENVSRSAALIQQSTTVKNKDIR  228 (247)
Q Consensus       150 ~~~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kq-kdeliIeG~D~e~V~~~AA~Iqq~~~~K~KdiR  228 (247)
                      ++|+|||+++..+++|+.|+||||||||||+.++||+||+++.+++ +|+|+|+|+|+|.|+|+||.||++|.+||||||
T Consensus        94 lvGvGyra~v~~e~~g~~l~l~N~LG~Sh~v~~~iP~gv~v~v~~~~~t~I~v~GiDKq~Vgq~AA~IR~~~~vk~kD~R  173 (192)
T 2zkr_e           94 SVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIR  173 (192)
T ss_dssp             EECSSSCCEEEECTTCSEEEEESGGGCSSCEEEECCSSCEEEECSSCSSEEEEEESCHHHHHHHHHHHHHHTCCSSSCTT
T ss_pred             EEEecceeEEEEccCCCEEEEeCcCCCcccEEeeCCCCeEEEEcCCCCCEEEEEeCCHHHHHHHHHHHHhhCcCCCCCcc
Confidence            9999999998777789999999999999999999999999999854 599999999999999999999999999999999


Q ss_pred             eeeceEEEeeeeeeecCCC
Q psy7621         229 KFLDGLYVSEKTTVVTDAS  247 (247)
Q Consensus       229 kFlDGiYvsek~~vqq~d~  247 (247)
                      +||||||||||++++++|.
T Consensus       174 ~F~Dgiyv~~k~~~~~~~~  192 (192)
T 2zkr_e          174 KFLDGIYVSEKGTVQQADE  192 (192)
T ss_dssp             TCCCEEEEEEC--------
T ss_pred             EeecCEEEEEeccccccCC
Confidence            9999999999999998773

>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=2.1e-55  Score=369.60  Aligned_cols=160  Identities=38%  Similarity=0.534  Sum_probs=149.7

Q ss_pred             cceeeeeCCCc---------EEeeCCeEEEEEEE-----ee-eCCEEEEEecCCChhhhhhHhhHHHHHhhhcccccccc
Q psy7621          10 QSFFYEIPPDL---------NPGGGGGCLYLNKT-----YR-WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKVK   74 (247)
Q Consensus        10 gK~~ieIP~~v---------~v~Gp~G~L~l~~~-----~~-~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVtk~~   74 (247)
                      .+.|++||++|         +|+||+|+|.++++     +. .++.+.|+.++++|+++|+|||+||||+||++|||+  
T Consensus         7 ~~~~I~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~~~v~i~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~--   84 (184)
T 3j21_F            7 IREEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFTEDGNVVIYKDFPRRKDVAIARTFAAHIRNMIKGVTE--   84 (184)
T ss_dssp             CEEEEECCSSCEEEESSSEEEEECSSCEEEEECCCTTCEEEEETTEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred             eeEEEeCCCCcEEEEeCCEEEEEcCCeEEEEEecCCcEEEEEeCCEEEEEECCCCHHHHHHHHHHHHHHHhhheeecc--
Confidence            57899999998         69999999999884     12 478999999999999999999999999999999999  


Q ss_pred             cceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEEEee
Q psy7621          75 DCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAAYAH  154 (247)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~~ah  154 (247)
                                                                                          ||.|+|+++|+|
T Consensus        85 --------------------------------------------------------------------Gf~~kL~lvgvg   96 (184)
T 3j21_F           85 --------------------------------------------------------------------GFTYKLKVVYSH   96 (184)
T ss_dssp             --------------------------------------------------------------------CEEEEEEEECSS
T ss_pred             --------------------------------------------------------------------CeEEEEEEEEec
Confidence                                                                                999999999999


Q ss_pred             cCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccccccccceeeeeceE
Q psy7621         155 FPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGL  234 (247)
Q Consensus       155 fpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~~~K~KdiRkFlDGi  234 (247)
                      |||++..+  |+.|+|+||||||||++++||+||+++.++  ++|+|+|+|+|.|||+||+|||+|+|||||||+|||||
T Consensus        97 ypira~~~--g~~l~l~n~LG~sh~v~~~ip~gv~v~v~~--~~Iil~G~Dke~Vgq~AA~Ir~~~~vK~KDiR~F~DGi  172 (184)
T 3j21_F           97 FPISVKVQ--GDEVIIENFLGEKAPRKAKILPGVTVKVRG--QEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGI  172 (184)
T ss_dssp             SCCEEEEE--TTEEEEECGGGCSSCEEEECCTTEEEEEET--TEEEEEESCHHHHHHHHHHHHHHHCCCSSCSSSCCCEE
T ss_pred             ccceEEEc--CCEEEEEecCCccccEEEECCCCeEEEecC--CEEEEEECCHHHHHHHHHHHhhccccCCCcccEeeCCE
Confidence            99999775  788999999999999999999999999985  59999999999999999999999999999999999999


Q ss_pred             EEeeeeeee
Q psy7621         235 YVSEKTTVV  243 (247)
Q Consensus       235 Yvsek~~vq  243 (247)
                      |||||+-..
T Consensus       173 yv~ek~~~~  181 (184)
T 3j21_F          173 YIVEKAGKP  181 (184)
T ss_dssp             EESCSSSCC
T ss_pred             EEEecCccc
Confidence            999998544

>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...

Probab=100.00  E-value=4.9e-53  Score=354.62  Aligned_cols=161  Identities=34%  Similarity=0.526  Sum_probs=147.1

Q ss_pred             ceeeeeCCCc---------EEeeCCeEEEEEE-E----e-eeCCEEEEEecCCChhhhhhHhhHHHHHhhhccccccccc
Q psy7621          11 SFFYEIPPDL---------NPGGGGGCLYLNK-T----Y-RWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKVKD   75 (247)
Q Consensus        11 K~~ieIP~~v---------~v~Gp~G~L~l~~-~----~-~~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVtk~~~   75 (247)
                      +.|++||++|         +|+||+|+|.+++ +    + ..++.+.|+.++++|+++|+|||+||||+||++|||+   
T Consensus         3 ~~pI~IP~gV~v~i~~~~vtVkGpkG~L~~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~Nmi~GVt~---   79 (178)
T 1vq8_E            3 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTE---   79 (178)
T ss_dssp             EEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred             cccEEcCCCCEEEEeCCEEEEECCCeEEEEEEECCeEEEEEECCEEEEEcCCCCHHHHHHHHHHHHHHcCEEEEEcc---
Confidence            5799999998         6999999999988 4    2 2578899999999999999999999999999999999   


Q ss_pred             ceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEEEeec
Q psy7621          76 CAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAAYAHF  155 (247)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~~ahf  155 (247)
                                                                                         ||.|+|+++|+||
T Consensus        80 -------------------------------------------------------------------Gf~~~L~ivGvGy   92 (178)
T 1vq8_E           80 -------------------------------------------------------------------GWEYGMEVFYSHF   92 (178)
T ss_dssp             -------------------------------------------------------------------CEEEEEEEECSSS
T ss_pred             -------------------------------------------------------------------CeEEEEEEEeeCC
Confidence                                                                               9999999999999


Q ss_pred             CceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccccccccceeeeeceEE
Q psy7621         156 PINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLY  235 (247)
Q Consensus       156 pi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~~~K~KdiRkFlDGiY  235 (247)
                      ||++..+  |+.|+||||||||||+.++||+||+++.++  |+|+|+|+|+|.|+|+||.||++++.||||||+|+||+|
T Consensus        93 pira~~~--g~~l~l~N~LG~shpv~~~ip~gi~v~v~~--~~I~v~G~Dkq~Vgq~AA~Ir~~r~pKGKGIr~F~DGiy  168 (178)
T 1vq8_E           93 PMQVNVE--GDEVVIENFLGEKAPRRTTIHGDTDVEIDG--EELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVY  168 (178)
T ss_dssp             CCEEEEE--TTEEEEESGGGCSSCEEEECCTTCEEEEET--TEEEEEESCHHHHHHHHHHHHHTTCCSSSCTTTCCCEEE
T ss_pred             ceEEEEc--CCEEEEEccccccccEEEeCCCCeEEEEeC--CEEEEEECCHHHHHHHHHHHhccCCCCCCceeEEECCEE
Confidence            9999776  556999999999999999999999999984  899999999999999999999999999999999999999


Q ss_pred             EeeeeeeecC
Q psy7621         236 VSEKTTVVTD  245 (247)
Q Consensus       236 vsek~~vqq~  245 (247)
                      |+||++..++
T Consensus       169 i~~k~~~~~~  178 (178)
T 1vq8_E          169 ITRKPNRGDA  178 (178)
T ss_dssp             EEECC-----
T ss_pred             EEecccccCC
Confidence            9999987653

>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...

Probab=100.00  E-value=5.4e-48  Score=322.91  Aligned_cols=156  Identities=19%  Similarity=0.173  Sum_probs=144.2

Q ss_pred             eee-cceeeeeCCCc---------EEeeCCeEEEEEEEe----e-eCCEEEEEecCCChhhhhhHhhHHHHHhhhccccc
Q psy7621           7 MIY-QSFFYEIPPDL---------NPGGGGGCLYLNKTY----R-WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVT   71 (247)
Q Consensus         7 Msr-gK~~ieIP~~v---------~v~Gp~G~L~l~~~~----~-~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVt   71 (247)
                      ||| |+.|++||++|         +|+||+|+|.++++.    . .++.+.|+.++++|+++|+|||+||||+||++|||
T Consensus         1 mSrigk~pI~IP~gV~v~i~~~~v~VkGpkG~L~~~~~~~v~i~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt   80 (180)
T 3v2d_H            1 MSRIGRLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVS   80 (180)
T ss_dssp             -CCTTTSCEECCTTCEEEEETTEEEEECSSCEEEEECCTTSEEEEETTEEEEECSCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCceeeCCCCcEEEEeCCEEEEEeCCcEEEEEeCCCEEEEEECCEEEEEECCCcHHHHHHHHHHHHHHhhhEEeec
Confidence            899 99999999999         699999999998872    2 47899999999999999999999999999999999


Q ss_pred             ccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEE
Q psy7621          72 KVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAA  151 (247)
Q Consensus        72 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~  151 (247)
                      +                                                                      ||.|+|+++
T Consensus        81 ~----------------------------------------------------------------------Gf~~kL~lv   90 (180)
T 3v2d_H           81 E----------------------------------------------------------------------GYSKELLIK   90 (180)
T ss_dssp             T----------------------------------------------------------------------CEEEEEEEE
T ss_pred             C----------------------------------------------------------------------CcEEEEEEE
Confidence            9                                                                      999999999


Q ss_pred             EeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhcccc---cccccee
Q psy7621         152 YAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTT---VKNKDIR  228 (247)
Q Consensus       152 ~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~~---~K~KdiR  228 (247)
                      |+|||+++    +|+.|+|  |||||||++++||+||+++.++ +|+|+|+|+|+|.|+|+||+||++++   |||||||
T Consensus        91 gvgyra~~----~g~~l~l--~LG~sh~v~~~ip~gv~v~v~~-~t~Iil~G~Dke~Vgq~AA~Ir~~r~PepYKGKGIr  163 (180)
T 3v2d_H           91 GIGYRARL----VGRALEL--TVGFSHPVVVEPPEGITFEVPE-PTRVRVSGIDKQKVGQVAANIRAIRKPSAYHEKGIY  163 (180)
T ss_dssp             STTCEEEE----ETTEEEE--ECSSSSCEEECCCTTCEEECSS-TTEEEEEESCHHHHHHHHHHHHHHTCCCSSSSCEEE
T ss_pred             EEeeEEEE----CCCEEEE--EecCCeeEEEECCCCeEEEECC-CCEEEEEECcHHHHHHHHHHhcccCCCCCcCCCccc
Confidence            99999644    3788999  7999999999999999999994 59999999999999999999999986   9999999


Q ss_pred             eeeceEEEeeeee
Q psy7621         229 KFLDGLYVSEKTT  241 (247)
Q Consensus       229 kFlDGiYvsek~~  241 (247)
                      .  ||.||.+|.-
T Consensus       164 y--~~e~I~~K~g  174 (180)
T 3v2d_H          164 Y--AGEPVRLKPG  174 (180)
T ss_dssp             E--TTCCCCCCCC
T ss_pred             C--CCEEEEEeCc
Confidence            7  9999998863

>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...

Probab=100.00  E-value=1.4e-44  Score=301.43  Aligned_cols=151  Identities=18%  Similarity=0.232  Sum_probs=136.3

Q ss_pred             ee-cceeeeeCCCc---------EEeeCCeEEEEEEEe----e-eCCEEEEEecCCChhhhhhHhhHHHHHhhhcccccc
Q psy7621           8 IY-QSFFYEIPPDL---------NPGGGGGCLYLNKTY----R-WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTK   72 (247)
Q Consensus         8 sr-gK~~ieIP~~v---------~v~Gp~G~L~l~~~~----~-~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVtk   72 (247)
                      || ++.|++||++|         +|+||+|+|.++++.    . .++.+.|+.++++|+++|+|||+||||+||++|||+
T Consensus         1 Srigk~pI~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~~v~i~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~   80 (176)
T 3r8s_G            1 SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTE   80 (176)
T ss_dssp             CTTTTSCEECCTTCCCEESSSEEECCBTTBCCEEECCSSCEEEEETTEEEEECCTTCSSTHHHHHHHHHHHHHTTTHHHH
T ss_pred             CCccccceeCCCCcEEEEeCCEEEEEcCCEEEEEECCCCEEEEEeCCEEEEEECCCcHHHHHHHHHHHHHHHhHhhhccc
Confidence            56 89999999998         699999999998872    2 478899999999999999999999999999999999


Q ss_pred             cccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEEE
Q psy7621          73 VKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAAY  152 (247)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~~  152 (247)
                                                                                            ||.|+|+++|
T Consensus        81 ----------------------------------------------------------------------Gf~~kL~lvg   90 (176)
T 3r8s_G           81 ----------------------------------------------------------------------GFTKKLQLVG   90 (176)
T ss_dssp             ----------------------------------------------------------------------CEEECEEEES
T ss_pred             ----------------------------------------------------------------------CeEEEEEEee
Confidence                                                                                  9999999999


Q ss_pred             eecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccc---cccccceee
Q psy7621         153 AHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQST---TVKNKDIRK  229 (247)
Q Consensus       153 ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~---~~K~KdiRk  229 (247)
                      +|||+++    +|+.|+  +||||||+++++||+||+++.+ ++|+|+|+|+|+|.|||+||+||+.+   |||||||| 
T Consensus        91 vgyra~~----~g~~l~--l~LG~sh~v~~~ip~gv~v~v~-~~t~Iil~G~Dke~Vgq~AA~Ir~~R~PepYKGKGI~-  162 (176)
T 3r8s_G           91 VGYRAAV----KGNVIN--LSLGFSHPVDHQLPAGITAECP-TQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVR-  162 (176)
T ss_dssp             TTCEEEC----SSSEEE--EECSSSSCEEEECCTTCEEEEE-ETTEEEEEESCHHHHHHHHHHHHHTTCCCSSSCCEEE-
T ss_pred             eeeEEEe----CCCEEE--EEecCCeeEEEECCCCeEEEEC-CCCEEEEEECcHHHHHHHHHHhhccCCCCCccCCcee-
Confidence            9999655    467776  5899999999999999999999 58999999999999999999999997   89999998 


Q ss_pred             eeceEEEe
Q psy7621         230 FLDGLYVS  237 (247)
Q Consensus       230 FlDGiYvs  237 (247)
                       ..|.+|-
T Consensus       163 -y~~E~i~  169 (176)
T 3r8s_G          163 -YADEVVR  169 (176)
T ss_dssp             -ESSCCCC
T ss_pred             -ECCeEEE
Confidence             4444443

>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*

Probab=100.00  E-value=1.6e-42  Score=298.54  Aligned_cols=157  Identities=18%  Similarity=0.212  Sum_probs=142.5

Q ss_pred             eeeee-cceeeeeCCCc---------EEeeCCeEEEEEEE----ee-eCCEEEEEecCCChhhhhhHhhHHHHHhhhccc
Q psy7621           5 TFMIY-QSFFYEIPPDL---------NPGGGGGCLYLNKT----YR-WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKG   69 (247)
Q Consensus         5 ~fMsr-gK~~ieIP~~v---------~v~Gp~G~L~l~~~----~~-~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikG   69 (247)
                      +=||| ++.||+||++|         +|+||+|+|.++++    +. .++.+.|+.++++|+++|+|||+||||+||++|
T Consensus        26 ~~MSRIgk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~~~v~i~~e~~~i~v~~~~~~k~~ra~~Gt~rslI~NMI~G  105 (212)
T 1nkw_E           26 DNMSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKG  105 (212)
T ss_pred             cccccccccceecCCCcEEEEeCCEEEEECCCEEEEEECCCCeEEEEECCEEEEEcCCCCHHHHHHHHHHHHHhhCEEEe
Confidence            34999 99999999998         69999999998886    22 578899999999999999999999999999999


Q ss_pred             ccccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEE
Q psy7621          70 VTKVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMR  149 (247)
Q Consensus        70 Vtk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr  149 (247)
                      ||+                                                                      ||.|+|+
T Consensus       106 Vt~----------------------------------------------------------------------Gf~kkLe  115 (212)
T 1nkw_E          106 VSD----------------------------------------------------------------------GYTINLE  115 (212)
T ss_pred             ecc----------------------------------------------------------------------CeEEEEE
Confidence            999                                                                      9999999


Q ss_pred             EEEeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccc---cccccc
Q psy7621         150 AAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQST---TVKNKD  226 (247)
Q Consensus       150 ~~~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~---~~K~Kd  226 (247)
                      ++|+|||+++    +|+.|+|  ||||||++.++||+||++++++ +|+|+|+|+|+|.|+|+||.||+.+   ||||||
T Consensus       116 lvGvGYra~~----~G~~L~L--~LG~SHpv~~~iP~GI~v~v~~-~t~Iiv~GiDKq~VGq~AA~IR~~R~PEPYKGKG  188 (212)
T 1nkw_E          116 LRGVGFRAKL----TGKALEM--NIGYSHPVIIEPPAGVTFAVPE-PTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGKG  188 (212)
T ss_pred             EeeeeeEEEc----CCCEEEE--EccCCccEEEECCCCeEEEeCC-CCEEEEEeCCHHHHHHHHHHHhccCCCCCcCCCc
Confidence            9999999764    5888999  7999999999999999999995 5999999999999999999999996   899999


Q ss_pred             eeeeeceEEEeeee
Q psy7621         227 IRKFLDGLYVSEKT  240 (247)
Q Consensus       227 iRkFlDGiYvsek~  240 (247)
                      ||  ..|.+|--|.
T Consensus       189 Ir--y~~E~I~rK~  200 (212)
T 1nkw_E          189 VR--FVGEQIALKA  200 (212)
T ss_pred             Ee--ECCeEEEEcC
Confidence            98  6777776553

>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J

Probab=100.00  E-value=7.8e-43  Score=291.52  Aligned_cols=153  Identities=22%  Similarity=0.237  Sum_probs=133.8

Q ss_pred             ee-cceeeeeCCCc---------EEeeCCeEEEEEEE----e-eeCCEEEEEecCCChhhhhhHhhHHHHHhhhcccccc
Q psy7621           8 IY-QSFFYEIPPDL---------NPGGGGGCLYLNKT----Y-RWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTK   72 (247)
Q Consensus         8 sr-gK~~ieIP~~v---------~v~Gp~G~L~l~~~----~-~~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVtk   72 (247)
                      || |+.|++||++|         +|+||+|+|.++++    + ..++.+.|+.++++|+++|+|||+||||+||++|||+
T Consensus         1 srigk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~v~i~~~~~~l~v~~~~~~k~~~a~~Gt~rsli~Nmi~GVt~   80 (177)
T 1rl6_A            1 SRVGKKPIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSK   80 (177)
T ss_dssp             ------CEECCTTCEEEEETTEEEEEETTEEEEEECCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcccccceEcCCCCEEEEeCCEEEEECCCeEEEEEcCCCEEEEEeCCEEEEEcCCCCHHHHHHHHHHHHHHhCEEEeEcC
Confidence            56 89999999998         69999999998887    2 2578899999999999999999999999999999999


Q ss_pred             cccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEEE
Q psy7621          73 VKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAAY  152 (247)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~~  152 (247)
                                                                                            ||.|+|+++|
T Consensus        81 ----------------------------------------------------------------------Gf~~~L~lvG   90 (177)
T 1rl6_A           81 ----------------------------------------------------------------------GYEKALELVG   90 (177)
T ss_dssp             ----------------------------------------------------------------------CEEEEEEEES
T ss_pred             ----------------------------------------------------------------------CcEEEEEEEe
Confidence                                                                                  9999999999


Q ss_pred             eecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccc---cccccceee
Q psy7621         153 AHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQST---TVKNKDIRK  229 (247)
Q Consensus       153 ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~---~~K~KdiRk  229 (247)
                      +|||++.    +|+.|+|  +|||||++.++||+||++++++ +|+|+|+|+|+|.|+|+||.||+.+   |||||||| 
T Consensus        91 vGyra~~----~G~~l~l--~LG~Shpv~~~iP~gi~v~v~~-~t~I~v~G~Dkq~Vgq~AA~Ir~~R~PepYKGKGI~-  162 (177)
T 1rl6_A           91 VGYRASK----QGKKLVL--SVGYSHPVEIEPEEGLEIEVPS-QTKIIVKGADKQRVGELAANIRAVRPPEPYKGKGIR-  162 (177)
T ss_dssp             TTCEEEE----ETTEEEE--ESSSSSCEEECCCTTEEEEEEE-TTEEEEEESCHHHHHHHHHHHHTTSCCCTTTCCEEE-
T ss_pred             eceEEEe----cCCEEEE--EecCCccEEEeCCCCcEEEECC-CCEEEEEeCCHHHHHHHHHHHhccCCCCCcCCCcEe-
Confidence            9999764    4788999  7999999999999999999995 5999999999999999999999996   89999998 


Q ss_pred             eeceEEEeee
Q psy7621         230 FLDGLYVSEK  239 (247)
Q Consensus       230 FlDGiYvsek  239 (247)
                       ..|.+|--|
T Consensus       163 -y~~E~i~~K  171 (177)
T 1rl6_A          163 -YEGELVRLK  171 (177)
T ss_dssp             -ETTCCCCC-
T ss_pred             -ECCeEEEEc
Confidence             555555433

>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H

Probab=100.00  E-value=1e-43  Score=299.21  Aligned_cols=154  Identities=19%  Similarity=0.219  Sum_probs=136.0

Q ss_pred             eee-cceeeeeCCCc---------EEeeCCeEEEEEEEe----e-eCCEEEEEecCCChhhhhhHhhHHHHHhhhccccc
Q psy7621           7 MIY-QSFFYEIPPDL---------NPGGGGGCLYLNKTY----R-WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVT   71 (247)
Q Consensus         7 Msr-gK~~ieIP~~v---------~v~Gp~G~L~l~~~~----~-~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVt   71 (247)
                      ||| ++.|++||++|         +|+||+|+|.++++.    . .++.+.|+.++++|+++|+|||+||||+||++|||
T Consensus         1 mSrigk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~Gt~rslI~NmI~GVt   80 (185)
T 2zjr_E            1 MSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVS   80 (185)
T ss_dssp             ----CCCCBCCCTTCCEECCTTCCEECCSSCCCCCCCCSSSCCBCCSSSBBCCCSSCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccceecCCCCEEEEeCCEEEEECCCeEEEEEcCCCEEEEEeCCEEEEECCCCCHHHHHHHHHHHHHhhcEEeeec
Confidence            899 99999999988         799999999988762    1 46779999899999999999999999999999999


Q ss_pred             ccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEE
Q psy7621          72 KVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAA  151 (247)
Q Consensus        72 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~  151 (247)
                      +                                                                      ||.|+|+++
T Consensus        81 ~----------------------------------------------------------------------Gf~kkL~lv   90 (185)
T 2zjr_E           81 D----------------------------------------------------------------------GYTINLELR   90 (185)
T ss_dssp             H----------------------------------------------------------------------CEEEEEECB
T ss_pred             c----------------------------------------------------------------------CcEEEEEEe
Confidence            9                                                                      999999999


Q ss_pred             EeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccc---ccccccee
Q psy7621         152 YAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQST---TVKNKDIR  228 (247)
Q Consensus       152 ~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~---~~K~KdiR  228 (247)
                      |+|||+++    +|+.|+|  +||||||+.++||+||++++++ +|+|+|+|+|+|.|+|+||+||+.+   ||||||||
T Consensus        91 GvGYra~~----~G~~l~l--~LG~Shpv~~~iP~gI~v~v~~-~t~I~l~G~DKq~Vgq~AA~Ir~~R~PepYKGKGI~  163 (185)
T 2zjr_E           91 GVGFRAKL----TGKALEM--NIGYSHPVIIEPPAGVTFAVPE-PTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGKGVR  163 (185)
T ss_dssp             STTCCCCC----BTTBCBC--CSSCSSCCBCCCCTTEEEECSS-TTEEEEEESSHHHHHHHHHHHHHHTCCCTTTCCBCC
T ss_pred             eeccEEEE----cCCEEEE--EeeCCccEEEECCCCeEEEECC-CCEEEEEecCHHHHHHHHHHHhccCCCCCcCCCcEe
Confidence            99999765    4777888  8999999999999999999995 5999999999999999999999996   89999998


Q ss_pred             eeeceEEEeee
Q psy7621         229 KFLDGLYVSEK  239 (247)
Q Consensus       229 kFlDGiYvsek  239 (247)
                        ..|.+|--|
T Consensus       164 --y~~E~i~~K  172 (185)
T 2zjr_E          164 --FVGEQIALK  172 (185)
T ss_dssp             --CSSCCCCCC
T ss_pred             --ECCeEEEEc
Confidence              555555433

>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=1.4e-42  Score=300.42  Aligned_cols=156  Identities=18%  Similarity=0.187  Sum_probs=140.6

Q ss_pred             eeeee-cceeeeeCCCc---------EEeeCCeEEEEEEE----e-e-eCCEEEEEecCCChhhhhhHhhHHHHHhhhcc
Q psy7621           5 TFMIY-QSFFYEIPPDL---------NPGGGGGCLYLNKT----Y-R-WEETFDVDCDNGTKKEIAAVRTVCSHISNMLK   68 (247)
Q Consensus         5 ~fMsr-gK~~ieIP~~v---------~v~Gp~G~L~l~~~----~-~-~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMik   68 (247)
                      +-||| |+.||+||++|         +|+||+|+|.++++    + . .++.+.|+.++++|+++|+|||+||||+||++
T Consensus        41 ~~mSrigk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~~~v~i~~~e~~~i~v~~~~~~k~~~a~~Gt~rslI~NMI~  120 (223)
T 3bbo_I           41 CKESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVV  120 (223)
T ss_dssp             -CCCCCCCCCCCCSTTSCEEESSSEEEECCSSCCEEEECCSSCEEEECSSSCEEEECSSCCTTHHHHHHHHTTTTTHHHH
T ss_pred             cccccccccceecCCCCEEEEeCCEEEEECCCeEEEEEcCCCEEEEEecCCEEEEEcCCCcHHHHHHHHHHHHHhhcEEE
Confidence            35999 99999999998         79999999998886    3 3 46789999999999999999999999999999


Q ss_pred             cccccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEE
Q psy7621          69 GVTKVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKM  148 (247)
Q Consensus        69 GVtk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykm  148 (247)
                      |||+                                                                      ||.|+|
T Consensus       121 GVt~----------------------------------------------------------------------Gf~kkL  130 (223)
T 3bbo_I          121 GVSK----------------------------------------------------------------------GFEKKL  130 (223)
T ss_dssp             HTTT----------------------------------------------------------------------CEEECE
T ss_pred             eecc----------------------------------------------------------------------CcEEEE
Confidence            9999                                                                      999999


Q ss_pred             EEEEeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccc---ccccc
Q psy7621         149 RAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQST---TVKNK  225 (247)
Q Consensus       149 r~~~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~---~~K~K  225 (247)
                      +++|+|||+++    +|+.|+|  +||||||+.++||+||++++++ +|+|+|+|+|+|.|+|+||+||+.+   |||||
T Consensus       131 elvGvGYra~~----~G~~L~L--~LG~SHpv~~~iP~GI~v~v~~-~t~Iii~GiDKq~Vgq~AA~IR~~R~PEPYKGK  203 (223)
T 3bbo_I          131 ILVGVGYRATV----DGKELVL--NLGFSHPVKMQIPDSLKVKVEE-NTRITVSGYDKSEIGQFAATVRKWRPPEPYKGK  203 (223)
T ss_dssp             ECCSTTCCEEE----CSSEEEE--CSSCSSCEEEECCSSEEEECSS-TTBCEEEESSSHHHHHHHHHTTSSSCCCTTTCC
T ss_pred             EEeeeceEEEe----cCCEEEE--EeeCCccEEEECCCCeEEEeCC-CCEEEEEeCCHHHHHHHHHHHhccCCCCCcCCC
Confidence            99999999764    5888999  8999999999999999999985 5999999999999999999999996   89999


Q ss_pred             ceeeeeceEEEeee
Q psy7621         226 DIRKFLDGLYVSEK  239 (247)
Q Consensus       226 diRkFlDGiYvsek  239 (247)
                      |||  ..|.+|--|
T Consensus       204 GI~--y~~E~I~rK  215 (223)
T 3bbo_I          204 GVK--YSDEIVRRK  215 (223)
T ss_dssp             SCE--ETTCCCCCC
T ss_pred             cEe--ECCeEEEEe
Confidence            998  455555443

>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1

Probab=99.65  E-value=7.9e-17  Score=124.11  Aligned_cols=71  Identities=35%  Similarity=0.453  Sum_probs=60.5

Q ss_pred             cceeeee--cceeeeeCCCc---------EEeeCCeEEEEEEEe---e---eCCE---EEEEecCCChhhhhhHhhHHHH
Q psy7621           3 GHTFMIY--QSFFYEIPPDL---------NPGGGGGCLYLNKTY---R---WEET---FDVDCDNGTKKEIAAVRTVCSH   62 (247)
Q Consensus         3 g~~fMsr--gK~~ieIP~~v---------~v~Gp~G~L~l~~~~---~---~~~~---~~V~~~~~~kk~~a~~gTv~S~   62 (247)
                      |-.-|.+  .+.||+||++|         +|+||+|+|.+++++   .   .++.   +.|+.++++|+++|+|||+|||
T Consensus         4 ~~~~Mk~i~~k~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~h~~v~i~~e~~~~~~i~v~~~~~~k~~ra~~Gt~Rsl   83 (100)
T 2cql_A            4 GSSGMKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSH   83 (100)
T ss_dssp             CCSSCCCCCCCEEECCCSSCEEEEETTEEEEEETTEEEEEECCSSCCEEEEECSSSCEEEEECCSSSTHHHHHHHHHHHH
T ss_pred             CCcccccccccCcEEcCCCCEEEEeCCEEEEECCCceEEEEeccCcEEEEEcCCceeEEEEEccCCCHHHHHHHHHHHHH
Confidence            3344766  59999999998         699999999999872   1   3444   9999999999999999999999


Q ss_pred             Hhhhccccccc
Q psy7621          63 ISNMLKGVTKV   73 (247)
Q Consensus        63 I~NMikGVtk~   73 (247)
                      |+||++|||++
T Consensus        84 I~NMI~GVt~G   94 (100)
T 2cql_A           84 VQNMIKGVTLG   94 (100)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHhhhEeecCC
Confidence            99999999993

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	247
d1vqoe2	93	d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeo	9e-50
d2cqla1	87	d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Ho	6e-06
d2j01h1	71	d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus	1e-05
d2zjre2	78	d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococc	2e-04
d1rl6a1	75	d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus	2e-04
d2qamg1	81	d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherich	6e-04
d1vqoe1	79	d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon	0.001

>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  156 bits (396), Expect = 9e-50
 Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 4/96 (4%)

Query: 144 FLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEG 203
           + Y M   Y+HFP+      +   + I NFLGEK  RR  +     V      +EL + G
Sbjct: 1   WEYGMEVFYSHFPMQVNVEGDE--VVIENFLGEKAPRRTTIHGDTDVEIDG--EELTVSG 56

Query: 204 NDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
            DIE V ++AA I+Q T + +KD+R F DG+Y++ K
Sbjct: 57  PDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 92

>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 6e-06
 Identities = 18/30 (60%), Positives = 23/30 (76%)

Query: 43 VDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
          VD   G +KE+A VRT+CSH+ NM+KGVT 
Sbjct: 57 VDKWWGNRKELATVRTICSHVQNMIKGVTL 86

>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]} Length = 71

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Thermus thermophilus [TaxId: 274]

 Score = 39.8 bits (93), Expect = 1e-05
 Identities = 7/35 (20%), Positives = 17/35 (48%)

Query: 38 EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
          E    V+  +  ++  +      + I+N +KGV++
Sbjct: 36 EGVVRVERPSDERRHKSLHGLTRTLIANAVKGVSE 70

>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 7/35 (20%), Positives = 16/35 (45%)

Query: 38 EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
           +   V+  +  +K  A      + ++N +KGV+ 
Sbjct: 43 GDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSD 77

>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 38 EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
               V   +  K   A   T  S ++NM++GV+K
Sbjct: 40 GNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSK 74

>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]} Length = 81

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Escherichia coli [TaxId: 562]

 Score = 35.5 bits (82), Expect = 6e-04
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 38 EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
          + T      +G     A   T  + +++M+ GVT+
Sbjct: 46 DNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTE 80

>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 45 CDNGTKKEIAAVRTVCSHISNMLKGVTK 72
           D    K ++ + T  SHI NM  GVT+
Sbjct: 51 SDEDNAKTMSTIGTFQSHIENMFHGVTE 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	247
d1vqoe2	93	Ribosomal protein L6 {Archaeon Haloarcula marismor	100.0
d1rl6a2	89	Ribosomal protein L6 {Bacillus stearothermophilus	99.76
d2zjre1	90	Ribosomal protein L6 {Deinococcus radiodurans [Tax	99.75
d2j01h2	89	Ribosomal protein L6 {Thermus thermophilus [TaxId:	99.74
d2qamg2	95	Ribosomal protein L6 {Escherichia coli [TaxId: 562	99.7
d2qamg1	81	Ribosomal protein L6 {Escherichia coli [TaxId: 562	99.66
d2cqla1	87	Ribosomal protein L6 {Human (Homo sapiens) [TaxId:	99.65
d1vqoe1	79	Ribosomal protein L6 {Archaeon Haloarcula marismor	99.65
d1rl6a1	75	Ribosomal protein L6 {Bacillus stearothermophilus	99.65
d2zjre2	78	Ribosomal protein L6 {Deinococcus radiodurans [Tax	99.62
d2j01h1	71	Ribosomal protein L6 {Thermus thermophilus [TaxId:	99.43

>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=9e-40  Score=252.50  Aligned_cols=93  Identities=39%  Similarity=0.638  Sum_probs=89.2

Q ss_pred             eEEEEEEEEeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhcccccc
Q psy7621         144 FLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVK  223 (247)
Q Consensus       144 f~ykmr~~~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~~~K  223 (247)
                      |.||||++|+|||||+.++  |+.++|+||||||++|+++||+||+|+.+  +|||+|||+|+|+|||+||+|+|+|.+|
T Consensus         1 f~Ykmk~vyaHFPi~v~v~--g~~v~I~NFlGEK~~R~~~i~~gv~v~v~--~deiiv~G~d~E~V~qtAA~Ieq~t~vk   76 (93)
T d1vqoe2           1 WEYGMEVFYSHFPMQVNVE--GDEVVIENFLGEKAPRRTTIHGDTDVEID--GEELTVSGPDIEAVGQTAADIEQLTRIN   76 (93)
T ss_dssp             EEEEEEEECSSSCCEEEEE--TTEEEEESGGGCSSCEEEECCTTCEEEEE--TTEEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             CEEEEEEEEEeCCeEEEEc--CCEEEEEeccCCceeEEEEecCCCeeEEc--CCEEEEEcCCHHHHHHHHHHHHHhhccC
Confidence            8999999999999999775  77899999999999999999999999996  6999999999999999999999999999


Q ss_pred             ccceeeeeceEEEeeee
Q psy7621         224 NKDIRKFLDGLYVSEKT  240 (247)
Q Consensus       224 ~KdiRkFlDGiYvsek~  240 (247)
                      |||+|+|+|||||+||.
T Consensus        77 ~kD~R~FlDGIYv~eKp   93 (93)
T d1vqoe2          77 DKDVRVFQDGVYITRKP   93 (93)
T ss_dssp             SSCTTTCCCEEEEEECC
T ss_pred             CCCccEeecCEEEEecC
Confidence            99999999999999984

>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.76  E-value=4.6e-19  Score=134.01  Aligned_cols=78  Identities=18%  Similarity=0.263  Sum_probs=71.5

Q ss_pred             eEEEEEEEEeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccc---
Q psy7621         144 FLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQST---  220 (247)
Q Consensus       144 f~ykmr~~~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~---  220 (247)
                      |..+|+++|+||++++    +|+.|.++  ||+||++.+++|+|+++..++ +++|+|+|+|+|.|+++||.||..+   
T Consensus         1 f~k~L~lvGVGYra~~----~g~~L~l~--LGySH~I~~~iP~~i~v~~~~-~t~i~i~g~dKq~vg~~aa~Ir~~r~pe   73 (89)
T d1rl6a2           1 YEKALELVGVGYRASK----QGKKLVLS--VGYSHPVEIEPEEGLEIEVPS-QTKIIVKGADKQRVGELAANIRAVRPPE   73 (89)
T ss_dssp             EEEEEEEESTTCEEEE----ETTEEEEE--SSSSSCEEECCCTTEEEEEEE-TTEEEEEESCHHHHHHHHHHHHTTSCCC
T ss_pred             CeEEEEEEEEEEEEEe----cCCEEEEE--EeecceEEEeCCCCcEEEecC-CceeEEEEcCHHHHHHHHHHHhhcCCCC
Confidence            7899999999999654    37788886  999999999999999999984 6999999999999999999999986   


Q ss_pred             ccccccee
Q psy7621         221 TVKNKDIR  228 (247)
Q Consensus       221 ~~K~KdiR  228 (247)
                      ||||||||
T Consensus        74 pYKGKGI~   81 (89)
T d1rl6a2          74 PYKGKGIR   81 (89)
T ss_dssp             TTTCCEEE
T ss_pred             CcCCCCEe
Confidence            79999998

>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.75  E-value=2.7e-19  Score=135.50  Aligned_cols=84  Identities=17%  Similarity=0.241  Sum_probs=73.7

Q ss_pred             eEEEEEEEEeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccc---
Q psy7621         144 FLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQST---  220 (247)
Q Consensus       144 f~ykmr~~~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~---  220 (247)
                      |..+|++.|+||++.+    +|+.|.++  ||+||++.+.+|+|+++.++ +++.|+|+|+|+|.|+++||.||..+   
T Consensus         1 f~k~L~lvGVGYra~~----~g~~L~l~--LG~SH~i~~~iP~~I~v~~~-~~t~i~i~g~dKq~vg~~aa~Ir~~r~pe   73 (90)
T d2zjre1           1 YTINLELRGVGFRAKL----TGKALEMN--IGYSHPVIIEPPAGVTFAVP-EPTRIDVSGIDKQLVGQVAANVRKVRKPD   73 (90)
T ss_dssp             EEEEEECBSTTCCCCC----BTTBCBCC--SSCSSCCBCCCCTTEEEECS-STTEEEEEESSHHHHHHHHHHHHHHTCCC
T ss_pred             CEEEEEEEEEEEEEEe----cCCEEEEE--EeeeeeeeeecCCCeEEEec-CCCEEEEEEcCHHHHHHHHHHHHhhCCCC
Confidence            7889999999999644    46678875  99999999999999999998 46999999999999999999999985   


Q ss_pred             cccccceeeeeceEEE
Q psy7621         221 TVKNKDIRKFLDGLYV  236 (247)
Q Consensus       221 ~~K~KdiRkFlDGiYv  236 (247)
                      ||||||||  .+|.+|
T Consensus        74 pYKGKGI~--y~~E~i   87 (90)
T d2zjre1          74 AYHGKGVR--FVGEQI   87 (90)
T ss_dssp             TTTCCBCC--CSSCCC
T ss_pred             CccCCCEe--ECCeEE
Confidence            79999998  444443

>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=2.9e-19  Score=135.25  Aligned_cols=78  Identities=17%  Similarity=0.169  Sum_probs=70.9

Q ss_pred             eEEEEEEEEeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccc---
Q psy7621         144 FLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQST---  220 (247)
Q Consensus       144 f~ykmr~~~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~---  220 (247)
                      |..+|++.|+||++++    +|+.|.++  ||+||++.+++|+|+++.+++ ++.|+|+|+|+|.|+++||.||..+   
T Consensus         1 f~k~LelvGVGYra~~----~g~~L~l~--LGySH~I~~~iP~~I~v~~~~-~t~i~i~g~dK~~vg~~aa~IR~~r~pe   73 (89)
T d2j01h2           1 YSKELLIKGIGYRARL----VGRALELT--VGFSHPVVVEPPEGITFEVPE-PTRVRVSGIDKQKVGQVAANIRAIRKPS   73 (89)
T ss_dssp             CCCEECCCSSSCEECC----BTTBEEEE--CSSSSCEEECCCTTEEEECSS-SSCEEEEESCSTTTTHHHHHHHTTSCSC
T ss_pred             CeEEEEEEEEEEEEEE----eCCEEEEE--EeccccccccCCCCeEEEecC-CCEEEEEeCCHHHHHHHHHHHhccCCCC
Confidence            6788999999999644    47778886  999999999999999999984 6899999999999999999999986   


Q ss_pred             ccccccee
Q psy7621         221 TVKNKDIR  228 (247)
Q Consensus       221 ~~K~KdiR  228 (247)
                      ||||||||
T Consensus        74 pYKGKGI~   81 (89)
T d2j01h2          74 AYHEKGIY   81 (89)
T ss_dssp             SSSSSSCC
T ss_pred             CcCCCcEe
Confidence            79999998

>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=4.3e-19  Score=135.82  Aligned_cols=87  Identities=17%  Similarity=0.289  Sum_probs=75.3

Q ss_pred             eEEEEEEEEeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccc---
Q psy7621         144 FLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQST---  220 (247)
Q Consensus       144 f~ykmr~~~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~---  220 (247)
                      |..+|++.++||++.+    +|+.|.++  ||+||++.+.+|+||++++++ ++.|+|+|+|+|.|+++||.||..+   
T Consensus         1 f~k~L~lvGVGYRa~~----~g~~L~l~--LGySH~i~~~iP~gI~v~~~~-~t~i~i~g~dKq~vg~~Aa~Ir~~r~pe   73 (95)
T d2qamg2           1 FTKKLQLVGVGYRAAV----KGNVINLS--LGFSHPVDHQLPAGITAECPT-QTEIVLKGADKQVIGQVAADLRAYRRPE   73 (95)
T ss_dssp             CCCCCCBCSSSCCCCC----CTTEECCC--SSSSSCCCEECCSSEECCCSS-TTCCCCEESCHHHHHHHHHHHHTTTCCC
T ss_pred             CeEEEEEEeEEEEEEE----cCCEEEEE--EecceeceecCCCCcEEEecC-CCEEEEEEcCHHHHHHHHHHHhccCCCC
Confidence            5678899999999644    47888885  999999999999999999984 6899999999999999999999986   


Q ss_pred             cccccceeeeeceEEEeee
Q psy7621         221 TVKNKDIRKFLDGLYVSEK  239 (247)
Q Consensus       221 ~~K~KdiRkFlDGiYvsek  239 (247)
                      ||||||||  .+|.+|.-|
T Consensus        74 pYKGKGI~--y~~E~i~~K   90 (95)
T d2qamg2          74 PYKGKGVR--YADEVVRTK   90 (95)
T ss_dssp             TTSCCSBC--CTTCCCCCC
T ss_pred             CcCCCcEe--ECCeEEEec
Confidence            89999998  555555443

>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=4.8e-18  Score=124.06  Aligned_cols=66  Identities=18%  Similarity=0.166  Sum_probs=59.8

Q ss_pred             ee-cceeeeeCCCc---------EEeeCCeEEEEEEE----ee-eCCEEEEEecCCChhhhhhHhhHHHHHhhhcccccc
Q psy7621           8 IY-QSFFYEIPPDL---------NPGGGGGCLYLNKT----YR-WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTK   72 (247)
Q Consensus         8 sr-gK~~ieIP~~v---------~v~Gp~G~L~l~~~----~~-~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVtk   72 (247)
                      || +|.||+||++|         +++||+|+|.+.++    +. .++++.|.+++++|+++|+|||+||||+||++|||+
T Consensus         1 SRIgk~pI~IP~~V~v~i~~~~i~vkGp~G~l~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~GT~rsli~NmI~GVt~   80 (81)
T d2qamg1           1 SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTE   80 (81)
T ss_dssp             CGGGGCCCCCCSSCCCCCBTTEECCCCSSSCCCCEECCSEEEECSSSSCEEEECSSCTTTTHHHHHHHHHHHHHHHHTTT
T ss_pred             CCcccCCcccCCCCEEEEECCEEEEEeCCEEEEEEecCCcEEEEcCCEEEEEeCCCChhHHHHHHHHHHHHHHheeeeeC
Confidence            57 99999999999         69999999999987    22 478899999999999999999999999999999997


Q ss_pred             c
Q psy7621          73 V   73 (247)
Q Consensus        73 ~   73 (247)
                      +
T Consensus        81 G   81 (81)
T d2qamg1          81 G   81 (81)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.3e-17  Score=119.14  Aligned_cols=64  Identities=36%  Similarity=0.478  Sum_probs=57.6

Q ss_pred             cceeeeeCCCc---------EEeeCCeEEEEEEEe-----e----eCCEEEEEecCCChhhhhhHhhHHHHHhhhccccc
Q psy7621          10 QSFFYEIPPDL---------NPGGGGGCLYLNKTY-----R----WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVT   71 (247)
Q Consensus        10 gK~~ieIP~~v---------~v~Gp~G~L~l~~~~-----~----~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVt   71 (247)
                      ++.||+||++|         +++||+|+|.+++++     .    .++.+.+.+++++|+++|+|||+||||+||++|||
T Consensus         6 ~~~~I~IP~gV~v~i~~~~i~vkGpkG~L~~~~~~~~v~~~~~~~~~~~i~v~~~~~~k~~~a~~GT~rslI~Nmi~GVt   85 (87)
T d2cqla1           6 SNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVT   85 (87)
T ss_dssp             CCEEECCCSSCEEEEETTEEEEEETTEEEEEECCSSCCEEEEECSSSCEEEEECCSSSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcEECCCCCEEEEeCCEEEEEcCCcEEEEEecCCcceEEEeeccccEEEeecCCCCHHHHHHHHHHHHHHHhheeeee
Confidence            89999999999         699999999998751     1    36789999999999999999999999999999999


Q ss_pred             cc
Q psy7621          72 KV   73 (247)
Q Consensus        72 k~   73 (247)
                      ++
T Consensus        86 ~G   87 (87)
T d2cqla1          86 LG   87 (87)
T ss_dssp             TS
T ss_pred             CC
Confidence            73

>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.65  E-value=7.1e-17  Score=116.65  Aligned_cols=63  Identities=30%  Similarity=0.425  Sum_probs=57.0

Q ss_pred             ceeeeeCCCc---------EEeeCCeEEEEEEEe-----e-eCCEEEEEecCCChhhhhhHhhHHHHHhhhccccccc
Q psy7621          11 SFFYEIPPDL---------NPGGGGGCLYLNKTY-----R-WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKV   73 (247)
Q Consensus        11 K~~ieIP~~v---------~v~Gp~G~L~l~~~~-----~-~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVtk~   73 (247)
                      +.||+||++|         +++||+|+|.++++.     . .++.+.|.+++++|+++|+|||+||||+||++|||++
T Consensus         2 k~~I~IP~~V~v~i~~~~i~vkGp~G~L~~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~GT~rsli~NmI~GVt~G   79 (79)
T d1vqoe1           2 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEG   79 (79)
T ss_dssp             EEEEECCSSCEEEEETTEEEEEETTEEEEEECCCTTCEEEECSSEEEEECSCCSHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CceeECCCCcEEEEeCCEEEEEcCCeEEEEEccCCeEEEEEcCCEEEeccCcccchhhhhHHHHHHHHHHheeeeeCC
Confidence            6799999999         699999999998762     2 4789999999999999999999999999999999973

>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.65  E-value=7.8e-17  Score=116.14  Aligned_cols=61  Identities=26%  Similarity=0.216  Sum_probs=55.9

Q ss_pred             eeeeCCCc---------EEeeCCeEEEEEEE----ee-eCCEEEEEecCCChhhhhhHhhHHHHHhhhccccccc
Q psy7621          13 FYEIPPDL---------NPGGGGGCLYLNKT----YR-WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKV   73 (247)
Q Consensus        13 ~ieIP~~v---------~v~Gp~G~L~l~~~----~~-~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVtk~   73 (247)
                      ||+||+++         +++||+|+|.++++    +. .++.+.|.+++++|+++|+|||+||||+||++|||++
T Consensus         1 PI~IP~gV~v~i~~~~i~vkGpkG~L~~~~~~~v~i~~~~~~i~v~~~~~~k~~~al~GT~rsli~Nmi~GVt~G   75 (75)
T d1rl6a1           1 PIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKG   75 (75)
T ss_dssp             CEECCTTCEEEEETTEEEEEETTEEEEEECCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CcCCCCCcEEEEECCEEEEEeCCEEEEEeccCcEEEEEeCceEEEccCCCcHHHHHHHHHHHHHHHHhceeecCC
Confidence            79999999         69999999999987    22 5889999999999999999999999999999999973

>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.62  E-value=1e-17  Score=121.16  Aligned_cols=64  Identities=17%  Similarity=0.147  Sum_probs=57.4

Q ss_pred             cceeeeeCCCc---------EEeeCCeEEEEEEEee-----eCCEEEEEecCCChhhhhhHhhHHHHHhhhccccccc
Q psy7621          10 QSFFYEIPPDL---------NPGGGGGCLYLNKTYR-----WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKV   73 (247)
Q Consensus        10 gK~~ieIP~~v---------~v~Gp~G~L~l~~~~~-----~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVtk~   73 (247)
                      ||.||+||++|         +|+||+|+|.++++..     .++.+.+.+++++|+++|+|||+||||+||++|||++
T Consensus         1 Gk~pI~IP~~V~v~i~~~~v~vkGpkG~l~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~GT~rsli~Nmi~GVt~G   78 (78)
T d2zjre2           1 GKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSDG   78 (78)
T ss_dssp             CCCCBCCCTTCCEECCTTCCEECCSSCCCCCCCCSSSCCBCCSSSBBCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCceEcCCCCEEEEECCEEEEEcCCEEEEEEecccEEEEEcCCEEEEEcCCCCHHHHHHHHHHHHHHHHheeeecCC
Confidence            68999999999         7999999999888722     4678889999999999999999999999999999973

>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L6
superfamily: Ribosomal protein L6
family: Ribosomal protein L6
domain: Ribosomal protein L6
species: Thermus thermophilus [TaxId: 274]

Probab=99.43  E-value=7.7e-15  Score=104.24  Aligned_cols=54  Identities=19%  Similarity=0.161  Sum_probs=47.9

Q ss_pred             cEEeeCCeEEEEEEEe----e-eCCEEEEEecCCChhhhhhHhhHHHHHhhhccccccc
Q psy7621          20 LNPGGGGGCLYLNKTY----R-WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKV   73 (247)
Q Consensus        20 v~v~Gp~G~L~l~~~~----~-~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVtk~   73 (247)
                      ++|+||+|+|.++++.    . .++.+.|.+++++|+++|+|||+||||+||++|||++
T Consensus        13 v~vkGpkG~l~~~~~~~i~i~~~~~~i~v~~~~~~k~~~a~~GT~rsli~NmI~GVt~G   71 (71)
T d2j01h1          13 VKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVSEG   71 (71)
T ss_dssp             EEEECSSCCEECCCCSSSCCCCCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEEECCCEEEEEEccCceEEEEeCCEEEEEecCCChHHHHHHHHHHHHHHHhheeecCC
Confidence            3799999999998872    1 4678899999999999999999999999999999973