Psyllid ID: psy7821

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-
Protein Sequence
MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPRVPTMNVSAEDVVTSVFLKLLLAIRRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVRRNTLELRRKR
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccHHHHHHHHHHHHHHHccccEEEcccccccHHHHHccccccccccccccEEcccccccEEcccccccccccccccEEEEEEEEEEEcccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccEEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccEEEccccccHHHHHHHcccccccEEEEEEEEEcccccccccccccccccccccccccEEEEHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEcccccHHEEEEEEEEEEccccccEEEcccccccEHccccccccccccccccccccccccccHHHHHHHcccEEEEccc
Coil and Loop (DISEMBL)
MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQlttlhraprptrpdkarrmgyrakqggklprsntssiMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQlttlhraprptrpdkarrmgyraKQVTLFSVQrydveegnvqyprvptmnvsaeDVVTSVFLKLLLAIRrdpkvnwickpvhkhremrgltsiskksrglgkghgfaqtiggsrHAAWVRRNTLELRRKR
Flexible Loop (DISEMBL)
MGAYRFISELYRKKQSDVMRYIHRIRVwqyrqlttlhraprptrpdkarrmgyrakqggklprsntssiMGAYRFISELYRKKQSDVMRYIHRIRVwqyrqlttlhraprptrpdkarrmgyRAKQvtlfsvqrydveegnvqyprvptmnvsaeDVVTSVFLKLLLairrdpkvnwickpvhkhremrgltsiskksrglgkghgfaqtiggsrhaawvrrntlelrrkr
Low Complexity Region (SEG)
MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPRVPTMNVSAEDVVTSVFLKLLLAIRRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVRRNTLELRRKR
Disordered region (IsUnstruct)
***YRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLH*******************************IMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLH**************GYRAKQVTLFSVQRYDVEEGNVQYPRVPTMNVSAEDVVTSVFLKLLLAIRRDPKVNWICKPVHKHR*******************GFAQTIGGSRHAAWVR**********
Disordered Region (DISOPRED)
*GAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSI******************MRYIHRI*VW*****************************VTLFSVQRYDVEEGNVQYPRVPTMNVSAEDVVTSVFLKLLLAIRRDPKVNWICKPVHKHREMRG**************************AAWVRRNTLE*RRK*
Disordered Region (DISEMBL)
MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRM************SNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPRVPTMNVSAEDVVTSVFLKLLLAIRRDPKVNWICKPVHKHREMRGLTSISK**********FAQTIGGSRHAAWVRRNTLELRRKR
Disordered Region (DISPRO)
*GAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRA*************YRAKQVTLFSVQRYDVEEGNVQYPRVPTMNVSAEDVVTSVFLKLLLAIRRDPKVNWICKPVHKHRE*RGLT***********************HAAWVRRNTLELR***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPRVPTMNVSAEDVVTSVFLKLLLAIRRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVRRNTLELRRKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	231	2.2.26 [Sep-21-2011]
O17445	204	60S ribosomal protein L15	yes	N/A	0.835	0.946	0.479	2e-44
P30736	204	60S ribosomal protein L15	N/A	N/A	0.852	0.965	0.457	3e-43
Q7T3M9	204	60S ribosomal protein L15	N/A	N/A	0.701	0.794	0.5	4e-43
P61314	204	60S ribosomal protein L15	yes	N/A	0.848	0.960	0.456	7e-43
Q5NVE0	204	60S ribosomal protein L15	yes	N/A	0.848	0.960	0.456	7e-43
Q9CZM2	204	60S ribosomal protein L15	yes	N/A	0.848	0.960	0.456	7e-43
Q4R5B2	204	60S ribosomal protein L15	N/A	N/A	0.848	0.960	0.456	7e-43
P61313	204	60S ribosomal protein L15	yes	N/A	0.848	0.960	0.456	7e-43
E2QXF3	204	60S ribosomal protein L15	yes	N/A	0.848	0.960	0.456	7e-43
Q5EAD6	204	60S ribosomal protein L15	yes	N/A	0.848	0.960	0.456	7e-43

>sp|O17445|RL15_DROME 60S ribosomal protein L15 OS=Drosophila melanogaster GN=RpL15 PE=2 SV=1

 Score =  179 bits (453), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/242 (47%), Positives = 140/242 (57%), Gaps = 49/242 (20%)

Query: 1   MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGK 60
           MGAYR++ ELYRKKQSDVMRY+ RIRVWQYRQLT LHR+PRPTRPDKARR+GYRAKQG  
Sbjct: 1   MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQG-- 58

Query: 61  LPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRM 120
                         F+              I+RIRV   R+       P+     K +  
Sbjct: 59  --------------FV--------------IYRIRV---RRGGRKRPVPKGCTYGKPKSH 87

Query: 121 G------YRAKQVTLFSVQRYDVEEGNVQYPRVPTMNVSAEDVVTSVFLKLLL-----AI 169
           G      YR  Q    + +R     G +   RV      A+D     F  +L+     AI
Sbjct: 88  GVNQLKPYRGLQS--IAEERVGRRLGGL---RVLNSYWIAQDASYKYFEVILIDTHHSAI 142

Query: 170 RRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVRRNTLELRR 229
           RRDPK+NWICK VHKHRE+RGLTS  K SRG+GKG+ ++QTIGGSR AAW R+N   + R
Sbjct: 143 RRDPKINWICKHVHKHRELRGLTSAGKSSRGIGKGYRYSQTIGGSRRAAWKRKNREHMHR 202

Query: 230 KR 231
           KR
Sbjct: 203 KR 204

Drosophila melanogaster (taxid: 7227)

>sp|P30736|RL15_CHITE 60S ribosomal protein L15 OS=Chironomus tentans GN=RpL15 PE=3 SV=3

 Score =  175 bits (443), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 109/238 (45%), Positives = 140/238 (58%), Gaps = 41/238 (17%)

Query: 1   MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGK 60
           MGAYR++ ELYRKKQSDV+RY+ R+R WQYRQLT LHRAPRP+RPDKARR+GY+AKQG  
Sbjct: 1   MGAYRYVQELYRKKQSDVLRYLLRVRCWQYRQLTKLHRAPRPSRPDKARRLGYKAKQG-- 58

Query: 61  LPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRM 120
                         F+              I+RIRV +  +   +H+     +P K+  +
Sbjct: 59  --------------FL--------------IYRIRVRRGGRKRPVHKGCTYGKP-KSHGV 89

Query: 121 GYRAKQVTLFSV--QRYDVEEGNVQYPRVPTMNVSAEDVVTSVFLKLLL-----AIRRDP 173
                   L SV  +R     G +   RV      A+D     +  + +     A+RRDP
Sbjct: 90  NQLKPYRNLQSVAEERVGRRMGGL---RVLNSYWVAQDAAFKYYEVICVDPFHNAVRRDP 146

Query: 174 KVNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVRRNTLELRRKR 231
           KVNW+C  VHKHRE+RGLTS  K SRG+GKG+ ++QTIGGSR AAW R+N L LRR R
Sbjct: 147 KVNWVCNAVHKHRELRGLTSAGKSSRGVGKGYRYSQTIGGSRRAAWRRKNRLHLRRYR 204

Chironomus tentans (taxid: 7153)

>sp|Q7T3M9|RL15_SINKN 60S ribosomal protein L15 OS=Siniperca kneri GN=rpl15 PE=2 SV=3

 Score =  174 bits (442), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/204 (50%), Positives = 123/204 (60%), Gaps = 42/204 (20%)

Query: 70  MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQ--- 126
           MGAYR++ EL+RKKQSDVMR++ R+R WQYRQL+ LHRAPRPTRPDKARR+GY+AKQ   
Sbjct: 1   MGAYRYMQELWRKKQSDVMRFLLRVRCWQYRQLSNLHRAPRPTRPDKARRLGYKAKQGYV 60

Query: 127 --------------VTLFSVQRYDVEEGNVQYPRVPTMNVSAED----------VVTSV- 161
                         V   +     V  G  Q     ++  +AE+          V+ S  
Sbjct: 61  VYRVRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSTAEERAGRHCGALRVLNSYW 120

Query: 162 --------FLKLLL------AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKGHGF 207
                   F +++L      A+RR+P   WI K VHKHREMRGLTS  KKSRGLGKGH F
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAVRRNPDTQWITKAVHKHREMRGLTSAGKKSRGLGKGHKF 180

Query: 208 AQTIGGSRHAAWVRRNTLELRRKR 231
             TIGGSR AAW RRNTL+LRR R
Sbjct: 181 HLTIGGSRRAAWKRRNTLQLRRYR 204

Siniperca kneri (taxid: 214812)

>sp|P61314|RL15_RAT 60S ribosomal protein L15 OS=Rattus norvegicus GN=Rpl15 PE=1 SV=2

 Score =  173 bits (439), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 132/239 (55%), Gaps = 43/239 (17%)

Query: 1   MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGK 60
           MGAY++I EL+RKKQSDVMR++ R+R WQYRQL+ LHRAPRPTRPDKARR+GY+AKQG  
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQG-- 58

Query: 61  LPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRM 120
                                         I+RIRV          + P P      + +
Sbjct: 59  ----------------------------YVIYRIRV-----RRGGRKRPVPKGATYGKPV 85

Query: 121 GYRAKQVTLF-SVQRYDVEEGNVQYPRVPTMNV--SAEDVVTSVFLKLLL-----AIRRD 172
            +   Q+    S+Q    E        +  +N     ED     F  +L+     AIRR+
Sbjct: 86  HHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRN 145

Query: 173 PKVNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVRRNTLELRRKR 231
           P   WI KPVHKHREMRGLTS  +KSRGLGKGH F  TIGGSR AAW RRNTL+L R R
Sbjct: 146 PDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204

Rattus norvegicus (taxid: 10116)

>sp|Q5NVE0|RL15_PONAB 60S ribosomal protein L15 OS=Pongo abelii GN=RPL15 PE=2 SV=3

 Score =  173 bits (439), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 132/239 (55%), Gaps = 43/239 (17%)

Query: 1   MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGK 60
           MGAY++I EL+RKKQSDVMR++ R+R WQYRQL+ LHRAPRPTRPDKARR+GY+AKQG  
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQG-- 58

Query: 61  LPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRM 120
                                         I+RIRV          + P P      + +
Sbjct: 59  ----------------------------YVIYRIRV-----RRGGRKRPVPKGATYGKPV 85

Query: 121 GYRAKQVTLF-SVQRYDVEEGNVQYPRVPTMNV--SAEDVVTSVFLKLLL-----AIRRD 172
            +   Q+    S+Q    E        +  +N     ED     F  +L+     AIRR+
Sbjct: 86  HHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRN 145

Query: 173 PKVNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVRRNTLELRRKR 231
           P   WI KPVHKHREMRGLTS  +KSRGLGKGH F  TIGGSR AAW RRNTL+L R R
Sbjct: 146 PDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204

Pongo abelii (taxid: 9601)

>sp|Q9CZM2|RL15_MOUSE 60S ribosomal protein L15 OS=Mus musculus GN=Rpl15 PE=2 SV=4

 Score =  173 bits (439), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 132/239 (55%), Gaps = 43/239 (17%)

Query: 1   MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGK 60
           MGAY++I EL+RKKQSDVMR++ R+R WQYRQL+ LHRAPRPTRPDKARR+GY+AKQG  
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQG-- 58

Query: 61  LPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRM 120
                                         I+RIRV          + P P      + +
Sbjct: 59  ----------------------------YVIYRIRV-----RRGGRKRPVPKGATYGKPV 85

Query: 121 GYRAKQVTLF-SVQRYDVEEGNVQYPRVPTMNV--SAEDVVTSVFLKLLL-----AIRRD 172
            +   Q+    S+Q    E        +  +N     ED     F  +L+     AIRR+
Sbjct: 86  HHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRN 145

Query: 173 PKVNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVRRNTLELRRKR 231
           P   WI KPVHKHREMRGLTS  +KSRGLGKGH F  TIGGSR AAW RRNTL+L R R
Sbjct: 146 PDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204

Mus musculus (taxid: 10090)

>sp|Q4R5B2|RL15_MACFA 60S ribosomal protein L15 OS=Macaca fascicularis GN=RPL15 PE=2 SV=1

 Score =  173 bits (439), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 132/239 (55%), Gaps = 43/239 (17%)

Query: 1   MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGK 60
           MGAY++I EL+RKKQSDVMR++ R+R WQYRQL+ LHRAPRPTRPDKARR+GY+AKQG  
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQG-- 58

Query: 61  LPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRM 120
                                         I+RIRV          + P P      + +
Sbjct: 59  ----------------------------YVIYRIRV-----RRGGRKRPVPKGATYGKPV 85

Query: 121 GYRAKQVTLF-SVQRYDVEEGNVQYPRVPTMNV--SAEDVVTSVFLKLLL-----AIRRD 172
            +   Q+    S+Q    E        +  +N     ED     F  +L+     AIRR+
Sbjct: 86  HHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRN 145

Query: 173 PKVNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVRRNTLELRRKR 231
           P   WI KPVHKHREMRGLTS  +KSRGLGKGH F  TIGGSR AAW RRNTL+L R R
Sbjct: 146 PDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204

Macaca fascicularis (taxid: 9541)

>sp|P61313|RL15_HUMAN 60S ribosomal protein L15 OS=Homo sapiens GN=RPL15 PE=1 SV=2

 Score =  173 bits (439), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 132/239 (55%), Gaps = 43/239 (17%)

Query: 1   MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGK 60
           MGAY++I EL+RKKQSDVMR++ R+R WQYRQL+ LHRAPRPTRPDKARR+GY+AKQG  
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQG-- 58

Query: 61  LPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRM 120
                                         I+RIRV          + P P      + +
Sbjct: 59  ----------------------------YVIYRIRV-----RRGGRKRPVPKGATYGKPV 85

Query: 121 GYRAKQVTLF-SVQRYDVEEGNVQYPRVPTMNV--SAEDVVTSVFLKLLL-----AIRRD 172
            +   Q+    S+Q    E        +  +N     ED     F  +L+     AIRR+
Sbjct: 86  HHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRN 145

Query: 173 PKVNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVRRNTLELRRKR 231
           P   WI KPVHKHREMRGLTS  +KSRGLGKGH F  TIGGSR AAW RRNTL+L R R
Sbjct: 146 PDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204

Homo sapiens (taxid: 9606)

>sp|E2QXF3|RL15_CANFA 60S ribosomal protein L15 OS=Canis familiaris GN=RPL15 PE=1 SV=1

 Score =  173 bits (439), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 132/239 (55%), Gaps = 43/239 (17%)

Query: 1   MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGK 60
           MGAY++I EL+RKKQSDVMR++ R+R WQYRQL+ LHRAPRPTRPDKARR+GY+AKQG  
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQG-- 58

Query: 61  LPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRM 120
                                         I+RIRV          + P P      + +
Sbjct: 59  ----------------------------YVIYRIRV-----RRGGRKRPVPKGATYGKPV 85

Query: 121 GYRAKQVTLF-SVQRYDVEEGNVQYPRVPTMNV--SAEDVVTSVFLKLLL-----AIRRD 172
            +   Q+    S+Q    E        +  +N     ED     F  +L+     AIRR+
Sbjct: 86  HHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRN 145

Query: 173 PKVNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVRRNTLELRRKR 231
           P   WI KPVHKHREMRGLTS  +KSRGLGKGH F  TIGGSR AAW RRNTL+L R R
Sbjct: 146 PDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204

Canis familiaris (taxid: 9615)

>sp|Q5EAD6|RL15_BOVIN 60S ribosomal protein L15 OS=Bos taurus GN=RPL15 PE=2 SV=3

 Score =  173 bits (439), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 132/239 (55%), Gaps = 43/239 (17%)

Query: 1   MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGK 60
           MGAY++I EL+RKKQSDVMR++ R+R WQYRQL+ LHRAPRPTRPDKARR+GY+AKQG  
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQG-- 58

Query: 61  LPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRM 120
                                         I+RIRV          + P P      + +
Sbjct: 59  ----------------------------YVIYRIRV-----RRGGRKRPVPKGATYGKPV 85

Query: 121 GYRAKQVTLF-SVQRYDVEEGNVQYPRVPTMNV--SAEDVVTSVFLKLLL-----AIRRD 172
            +   Q+    S+Q    E        +  +N     ED     F  +L+     AIRR+
Sbjct: 86  HHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRN 145

Query: 173 PKVNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVRRNTLELRRKR 231
           P   WI KPVHKHREMRGLTS  +KSRGLGKGH F  TIGGSR AAW RRNTL+L R R
Sbjct: 146 PDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
110671442	204	putative ribosomal protein L15 [Diaphori	0.692	0.784	0.635	2e-58
342356469	204	ribosomal protein L15 [Heliconius melpom	0.692	0.784	0.533	1e-45
357622551	204	ribosomal protein L15 [Danaus plexippus]	0.692	0.784	0.529	3e-45
70909707	204	ribosomal protein L15e [Georissus sp. AP	0.692	0.784	0.529	6e-45
268306486	204	ribosomal protein L15 [Manduca sexta]	0.692	0.784	0.519	1e-44
27462516	204	60S ribosomal protein L15 [Spodoptera fr	0.692	0.784	0.524	1e-44
112984404	204	ribosomal protein L15 [Bombyx mori] gi|5	0.692	0.784	0.524	1e-44
310769827	204	ribosomal protein L15 [Antheraea yamamai	0.692	0.784	0.519	3e-44
70909705	204	ribosomal protein L15e [Dascillus cervin	0.692	0.784	0.509	4e-44
315115481	204	ribosomal protein L15 [Euphydryas aurini	0.692	0.784	0.519	7e-44

>gi|110671442|gb|ABG81972.1| putative ribosomal protein L15 [Diaphorina citri]

 Score =  231 bits (588), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 131/206 (63%), Positives = 137/206 (66%), Gaps = 46/206 (22%)

Query: 70  MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTL 129
           MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQ   
Sbjct: 1   MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQG-- 58

Query: 130 FSVQRYDVEEGNVQYP---------------------------------------RVPTM 150
           + + R  V  G  + P                                       RV   
Sbjct: 59  YVIFRIRVRRGGRKRPVPKGATYGKPRTHGVNQLKPTRKLQAVAEERVGRRCGNLRVLNS 118

Query: 151 NVSAEDVVTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKGH 205
              A+D     F  +L+     AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKGH
Sbjct: 119 YWVAQDSTYKYFEVILIDPFHKAIRRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKGH 178

Query: 206 GFAQTIGGSRHAAWVRRNTLELRRKR 231
           GFAQTIGGSRHAAWVRRNTLELRRKR
Sbjct: 179 GFAQTIGGSRHAAWVRRNTLELRRKR 204

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|342356469|gb|AEL28893.1| ribosomal protein L15 [Heliconius melpomene cythera]

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/206 (53%), Positives = 126/206 (61%), Gaps = 46/206 (22%)

Query: 70  MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTL 129
           MGAYR+I ELYRKK SDVMR++ R+RVWQYRQLT +HRAPRPTRPDKARR+GYRAKQ   
Sbjct: 1   MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQG-- 58

Query: 130 FSVQRYDVEEGNVQYPRV-----------------PTMNVS------------------- 153
           + V R  V  G  + P                   PT N+                    
Sbjct: 59  YVVFRIRVRRGGRKRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEERVGRRCGGLRVLNS 118

Query: 154 ---AEDVVTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKGH 205
              A+D     F  +L+     AIRRDPK+NWI   VHKHREMRGLTS  K SRGLGKGH
Sbjct: 119 YWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGH 178

Query: 206 GFAQTIGGSRHAAWVRRNTLELRRKR 231
            F+QT GGSR AAW+RRNTL+LRRKR
Sbjct: 179 RFSQTKGGSRRAAWIRRNTLQLRRKR 204

Source: Heliconius melpomene cythera

Species: Heliconius melpomene

Genus: Heliconius

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357622551|gb|EHJ73979.1| ribosomal protein L15 [Danaus plexippus]

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 109/206 (52%), Positives = 126/206 (61%), Gaps = 46/206 (22%)

Query: 70  MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTL 129
           MGAYR+I ELYRKK SDVMR++ RIRVWQYRQLT +HRAPRPTRPDKARR+GYRAKQ   
Sbjct: 1   MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQG-- 58

Query: 130 FSVQRYDVEEGNVQYPRV-----------------PTMNVS------------------- 153
           F + R  V  G  + P                   PT N+                    
Sbjct: 59  FVIFRIRVRRGGRKRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEERVGRRCGGLRVLNS 118

Query: 154 ---AEDVVTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKGH 205
              A+D     +  +L+     AIRRDPK+NWI   VHKHREMRGLTS  K SRGLGKGH
Sbjct: 119 YWVAQDSSYKYYEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGH 178

Query: 206 GFAQTIGGSRHAAWVRRNTLELRRKR 231
            ++QT GGSR AAW+RRNTL+LRRKR
Sbjct: 179 RYSQTKGGSRRAAWIRRNTLQLRRKR 204

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909707|emb|CAJ17279.1| ribosomal protein L15e [Georissus sp. APV-2005]

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 109/206 (52%), Positives = 126/206 (61%), Gaps = 46/206 (22%)

Query: 70  MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTL 129
           MGAY++I ELYRKKQSDVMR++ R+RVWQYRQLT LHRAPRPTRPDKARRMGYRAKQ   
Sbjct: 1   MGAYKYIQELYRKKQSDVMRFLLRVRVWQYRQLTKLHRAPRPTRPDKARRMGYRAKQG-- 58

Query: 130 FSVQRYDVEEGNVQYP-----------------RVPTMNVSA------------------ 154
           + + R  V  G  + P                   PT  + A                  
Sbjct: 59  YVIYRIRVRRGGRKRPVPKGATYGKPKSHGVNQLKPTRXLQAVAEERVGRRCGGXRVLNS 118

Query: 155 ----EDVVTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKGH 205
               +D     F  +L+     AIRRDPK+NWI   VHKHRE+RG TS SK SRGLGKGH
Sbjct: 119 YWVGQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHRELRGKTSTSKSSRGLGKGH 178

Query: 206 GFAQTIGGSRHAAWVRRNTLELRRKR 231
            F+QTIGGSR AAW RRN+L+LRRKR
Sbjct: 179 RFSQTIGGSRRAAWRRRNSLQLRRKR 204

Source: Georissus sp. APV-2005

Species: Georissus sp. APV-2005

Genus: Georissus

Family: Georissidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|268306486|gb|ACY95364.1| ribosomal protein L15 [Manduca sexta]

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/206 (51%), Positives = 126/206 (61%), Gaps = 46/206 (22%)

Query: 70  MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTL 129
           MGAYR+I ELYRKK SDVMR++ R+RVWQYRQLT +HRAPRPTRPDKARR+G+RAKQ   
Sbjct: 1   MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGFRAKQG-- 58

Query: 130 FSVQRYDVEEGNVQYPRV-----------------PTMNVS------------------- 153
           + + R  V  G  + P                   PT N+                    
Sbjct: 59  YVIFRIRVRRGGRKRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEERVGRRCGGLRVLNS 118

Query: 154 ---AEDVVTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKGH 205
              A+D     F  +L+     AIRRDPK+NWI   VHKHREMRGLTS  + SRGLGKGH
Sbjct: 119 YWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGH 178

Query: 206 GFAQTIGGSRHAAWVRRNTLELRRKR 231
            F+QT GGSR AAW+RRNTL+LRRKR
Sbjct: 179 RFSQTKGGSRRAAWIRRNTLQLRRKR 204

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|27462516|gb|AAO15464.1|AF441167_1 60S ribosomal protein L15 [Spodoptera frugiperda]

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/206 (52%), Positives = 125/206 (60%), Gaps = 46/206 (22%)

Query: 70  MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTL 129
           MGAYR+I ELYRKK SDVMR++ R+RVWQYRQLT +HRAPRPTRPDKARR+GYRAKQ   
Sbjct: 1   MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQG-- 58

Query: 130 FSVQRYDVEEGNVQYP-----------------RVPTMNVS------------------- 153
           F + R  V  G  + P                   PT N+                    
Sbjct: 59  FVIFRIRVRRGGRKRPVPKGATYGKPKSQGVNQLKPTRNLQSIAEERVGRRCGGLRVLNS 118

Query: 154 ---AEDVVTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKGH 205
              A+D     F  +L+     AIRRDPK+NWI   VHKHREMRGLTS  + SRGLGKGH
Sbjct: 119 YWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGH 178

Query: 206 GFAQTIGGSRHAAWVRRNTLELRRKR 231
            F+QT GGSR AAW+RRNTL+L RKR
Sbjct: 179 RFSQTKGGSRRAAWIRRNTLQLHRKR 204

Source: Spodoptera frugiperda

Species: Spodoptera frugiperda

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|112984404|ref|NP_001037162.1| ribosomal protein L15 [Bombyx mori] gi|54609223|gb|AAV34827.1| ribosomal protein L15 [Bombyx mori]

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/206 (52%), Positives = 126/206 (61%), Gaps = 46/206 (22%)

Query: 70  MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTL 129
           MGAYR+I ELYRKK SDVMR++ R+RVWQYRQLT +HRAPRPTRPDKARR+GYRAKQ   
Sbjct: 1   MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQG-- 58

Query: 130 FSVQRYDVEEGNVQYPRV-----------------PTMNVS------------------- 153
           + V R  V  G  + P                   PT N+                    
Sbjct: 59  YVVFRIRVRRGGRKRPVAKGATYGKPKSHGVNQLKPTRNLQSIAEERVGRRCGGLRVLSS 118

Query: 154 ---AEDVVTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKGH 205
              A+D     F  +L+     AIRRDPK+NWI   VHKHREMRGLTS  + SRGLGKGH
Sbjct: 119 YWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGH 178

Query: 206 GFAQTIGGSRHAAWVRRNTLELRRKR 231
            ++QT GGSR AAW+RRNTL+LRRKR
Sbjct: 179 RYSQTKGGSRRAAWLRRNTLQLRRKR 204

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|310769827|gb|ADP21471.1| ribosomal protein L15 [Antheraea yamamai]

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 107/206 (51%), Positives = 126/206 (61%), Gaps = 46/206 (22%)

Query: 70  MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTL 129
           MGAYR+I ELYRKK SDVMR++ RIRVWQYRQLT +HRAPRPTRPDKARR+G+RAKQ   
Sbjct: 1   MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGFRAKQG-- 58

Query: 130 FSVQRYDVEEGNVQYP-----------------RVPTMNVS------------------- 153
           + + R  V  G  + P                   PT N+                    
Sbjct: 59  YVIFRIRVRRGGRKRPVPKGATYGKPKSHGVNQLKPTRNLQSIAEERVGRRCGGLRVLNS 118

Query: 154 ---AEDVVTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKGH 205
              A+D     +  +L+     AIRRDPK+NWI   VHKHREMRGLTS  + SRGLGKGH
Sbjct: 119 YWVAQDSSYKYYEVILIDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGH 178

Query: 206 GFAQTIGGSRHAAWVRRNTLELRRKR 231
            F+QT GGSR AAW+RRNTL+LRRKR
Sbjct: 179 RFSQTKGGSRRAAWIRRNTLQLRRKR 204

Source: Antheraea yamamai

Species: Antheraea yamamai

Genus: Antheraea

Family: Saturniidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|70909705|emb|CAJ17278.1| ribosomal protein L15e [Dascillus cervinus]

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 105/206 (50%), Positives = 126/206 (61%), Gaps = 46/206 (22%)

Query: 70  MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTL 129
           MGAY++I ELYRKKQSDV+R++ R+RVWQYRQLT LHRAPRP+RPDKARR+GYRAKQ   
Sbjct: 1   MGAYKYIQELYRKKQSDVLRFLLRVRVWQYRQLTKLHRAPRPSRPDKARRLGYRAKQG-- 58

Query: 130 FSVQRYDVEEGNVQYP---------------------------------------RVPTM 150
           + + R  V  G  + P                                       RV   
Sbjct: 59  YVIYRIRVRRGGRKRPVPKGATYGKPKSHGVNQLKPVRNLQAIAEERIGRRCGGLRVLNS 118

Query: 151 NVSAEDVVTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKGH 205
              A+D     +  +L+     AIRRDPK+NW+ K VHKHRE+RGLTS  K SRGLGKGH
Sbjct: 119 YWVAQDSSYKYYEVILVDPAHNAIRRDPKINWLVKAVHKHRELRGLTSAGKSSRGLGKGH 178

Query: 206 GFAQTIGGSRHAAWVRRNTLELRRKR 231
            ++QTIGGSR AAW RRNTL+LRRKR
Sbjct: 179 RYSQTIGGSRRAAWRRRNTLQLRRKR 204

Source: Dascillus cervinus

Species: Dascillus cervinus

Genus: Dascillus

Family: Dascillidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|315115481|gb|ADT80713.1| ribosomal protein L15 [Euphydryas aurinia]

 Score =  182 bits (463), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 107/206 (51%), Positives = 125/206 (60%), Gaps = 46/206 (22%)

Query: 70  MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTL 129
           MGAYR+I ELYRKK SDVMR++ R+RVWQYRQLT +HRAPRPTRPDKARR+GYRAKQ   
Sbjct: 1   MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQG-- 58

Query: 130 FSVQRYDVEEGNVQYP-----------------RVPTMNVS------------------- 153
           + + R  V  G  + P                   PT N+                    
Sbjct: 59  YVIFRIRVRRGGRKRPVPKGATYGKPKSHGVNQLKPTRNLQSIAEERVGRRCGGLRVLNS 118

Query: 154 ---AEDVVTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKGH 205
              A+D     +  +L+     AIRRDPK+NWI   VHKHREMRGLTS  K SRGLGKGH
Sbjct: 119 YWVAQDSSYKYYEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGH 178

Query: 206 GFAQTIGGSRHAAWVRRNTLELRRKR 231
            ++QT GGSR AAW+RRNTL LRRKR
Sbjct: 179 RYSQTKGGSRRAAWIRRNTLHLRRKR 204

Source: Euphydryas aurinia

Species: Euphydryas aurinia

Genus: Euphydryas

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	231
FB|FBgn0028697	204	RpL15 "Ribosomal protein L15"	0.329	0.372	0.708	2.6e-49
UNIPROTKB|E1BK63	204	E1BK63 "Ribosomal protein L15"	0.329	0.372	0.632	1.6e-22
UNIPROTKB|F1NQG5	206	RPL15 "Ribosomal protein L15"	0.251	0.281	0.775	5.3e-47
UNIPROTKB|Q5EAD6	204	RPL15 "60S ribosomal protein L	0.251	0.284	0.775	5.3e-47
UNIPROTKB|E2QXF3	204	RPL15 "60S ribosomal protein L	0.251	0.284	0.775	5.3e-47
UNIPROTKB|P61313	204	RPL15 "60S ribosomal protein L	0.251	0.284	0.775	5.3e-47
UNIPROTKB|I3LK33	204	LOC100620439 "Ribosomal protei	0.251	0.284	0.775	5.3e-47
MGI|MGI:1913730	204	Rpl15 "ribosomal protein L15"	0.251	0.284	0.775	5.3e-47
RGD|621181	204	Rpl15 "ribosomal protein L15"	0.251	0.284	0.775	5.3e-47
UNIPROTKB|G5E686	204	G5E686 "Ribosomal protein L15"	0.251	0.284	0.775	6.8e-47

FB|FBgn0028697 RpL15 "Ribosomal protein L15" [Drosophila melanogaster (taxid:7227)]

 Score = 278 (102.9 bits), Expect = 2.6e-49, Sum P(2) = 2.6e-49
 Identities = 56/79 (70%), Positives = 63/79 (79%)

Query:    70 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTL 129
             MGAYR++ ELYRKKQSDVMRY+ RIRVWQYRQLT LHR+PRPTRPDKARR+GYRAKQ   
Sbjct:     1 MGAYRYMQELYRKKQSDVMRYLLRIRVWQYRQLTKLHRSPRPTRPDKARRLGYRAKQG-- 58

Query:   130 FSVQRYDVEEGNVQYPRVP 148
             F + R  V  G  + P VP
Sbjct:    59 FVIYRIRVRRGGRKRP-VP 76

GO:0006412 "translation" evidence=ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS;NAS

GO:0005840 "ribosome" evidence=NAS

UNIPROTKB|E1BK63 E1BK63 "Ribosomal protein L15" [Bos taurus (taxid:9913)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 50/79 (63%), Positives = 63/79 (79%)

Query:    70 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTL 129
             MGAY++I EL+RKKQSDVMR++ R+R WQYRQL+ LHRAPRPTRPDKARR+GY+AKQ   
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQG-- 58

Query:   130 FSVQRYDVEEGNVQYPRVP 148
             + + R  V  G  ++P VP
Sbjct:    59 YVIYRIRVRRGGRKHP-VP 76

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1NQG5 RPL15 "Ribosomal protein L15" [Gallus gallus (taxid:9031)]

 Score = 257 (95.5 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
 Identities = 45/58 (77%), Positives = 54/58 (93%)

Query:     1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQG 58
             MGAY++I EL+RKKQSDVMR++ R+R WQYRQL+ LHRAPRPTRPDKARR+GY+AKQG
Sbjct:     3 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQG 60

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|Q5EAD6 RPL15 "60S ribosomal protein L15" [Bos taurus (taxid:9913)]

 Score = 257 (95.5 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
 Identities = 45/58 (77%), Positives = 54/58 (93%)

Query:     1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQG 58
             MGAY++I EL+RKKQSDVMR++ R+R WQYRQL+ LHRAPRPTRPDKARR+GY+AKQG
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQG 58

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2QXF3 RPL15 "60S ribosomal protein L15" [Canis lupus familiaris (taxid:9615)]

 Score = 257 (95.5 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
 Identities = 45/58 (77%), Positives = 54/58 (93%)

Query:     1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQG 58
             MGAY++I EL+RKKQSDVMR++ R+R WQYRQL+ LHRAPRPTRPDKARR+GY+AKQG
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQG 58

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P61313 RPL15 "60S ribosomal protein L15" [Homo sapiens (taxid:9606)]

 Score = 257 (95.5 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
 Identities = 45/58 (77%), Positives = 54/58 (93%)

Query:     1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQG 58
             MGAY++I EL+RKKQSDVMR++ R+R WQYRQL+ LHRAPRPTRPDKARR+GY+AKQG
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQG 58

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0003723 "RNA binding" evidence=TAS

GO:0005840 "ribosome" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|I3LK33 LOC100620439 "Ribosomal protein L15" [Sus scrofa (taxid:9823)]

 Score = 257 (95.5 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
 Identities = 45/58 (77%), Positives = 54/58 (93%)

Query:     1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQG 58
             MGAY++I EL+RKKQSDVMR++ R+R WQYRQL+ LHRAPRPTRPDKARR+GY+AKQG
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQG 58

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:1913730 Rpl15 "ribosomal protein L15" [Mus musculus (taxid:10090)]

 Score = 257 (95.5 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
 Identities = 45/58 (77%), Positives = 54/58 (93%)

Query:     1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQG 58
             MGAY++I EL+RKKQSDVMR++ R+R WQYRQL+ LHRAPRPTRPDKARR+GY+AKQG
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQG 58

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|621181 Rpl15 "ribosomal protein L15" [Rattus norvegicus (taxid:10116)]

 Score = 257 (95.5 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
 Identities = 45/58 (77%), Positives = 54/58 (93%)

Query:     1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQG 58
             MGAY++I EL+RKKQSDVMR++ R+R WQYRQL+ LHRAPRPTRPDKARR+GY+AKQG
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQG 58

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA;ISO

UNIPROTKB|G5E686 G5E686 "Ribosomal protein L15" [Bos taurus (taxid:9913)]

 Score = 257 (95.5 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
 Identities = 45/58 (77%), Positives = 54/58 (93%)

Query:     1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQG 58
             MGAY++I EL+RKKQSDVMR++ R+R WQYRQL+ LHRAPRPTRPDKARR+GY+AKQG
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQG 58

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P91374	RL15_CAEEL	No assigned EC number	0.4411	0.7012	0.7941	yes	N/A
P54780	RL15B_YEAST	No assigned EC number	0.4444	0.6839	0.7745	yes	N/A
O74895	RL15A_SCHPO	No assigned EC number	0.4347	0.6753	0.7761	yes	N/A
Q9US22	RL15B_SCHPO	No assigned EC number	0.4299	0.6753	0.7761	yes	N/A
E2QXF3	RL15_CANFA	No assigned EC number	0.4560	0.8484	0.9607	yes	N/A
O13418	RL15_ASPNG	No assigned EC number	0.4070	0.6580	0.7487	yes	N/A
P61313	RL15_HUMAN	No assigned EC number	0.4560	0.8484	0.9607	yes	N/A
Q9CZM2	RL15_MOUSE	No assigned EC number	0.4560	0.8484	0.9607	yes	N/A
Q86K01	RL15_DICDI	No assigned EC number	0.3776	0.8787	0.9902	yes	N/A
P61314	RL15_RAT	No assigned EC number	0.4560	0.8484	0.9607	yes	N/A
P05748	RL15A_YEAST	No assigned EC number	0.4444	0.6839	0.7745	yes	N/A
O23515	RL151_ARATH	No assigned EC number	0.4292	0.6969	0.7892	yes	N/A
O17445	RL15_DROME	No assigned EC number	0.4793	0.8354	0.9460	yes	N/A
Q8VYF1	RL152_ARATH	No assigned EC number	0.4243	0.6969	0.7892	yes	N/A
Q5EAD6	RL15_BOVIN	No assigned EC number	0.4560	0.8484	0.9607	yes	N/A
P52818	RL15_ANOGA	No assigned EC number	0.4920	0.6190	0.7009	yes	N/A
Q5NVE0	RL15_PONAB	No assigned EC number	0.4560	0.8484	0.9607	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	231
pfam00827	192	pfam00827, Ribosomal_L15e, Ribosomal L15	1e-45
PTZ00026	204	PTZ00026, PTZ00026, 60S ribosomal protein L15; Pro	4e-44
COG1632	195	COG1632, RPL15A, Ribosomal protein L15E [Translati	4e-27
PTZ00026	204	PTZ00026, PTZ00026, 60S ribosomal protein L15; Pro	2e-23
PRK04243	196	PRK04243, PRK04243, 50S ribosomal protein L15e; Va	1e-14

>gnl|CDD|144426 pfam00827, Ribosomal_L15e, Ribosomal L15

 Score =  150 bits (380), Expect = 1e-45
 Identities = 92/226 (40%), Positives = 123/226 (54%), Gaps = 43/226 (19%)

Query: 2   GAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKL 61
           GAY++I EL++KKQSDVMR++ R+R W+YRQL  + R  RPTRPDKARR+GY+AKQG   
Sbjct: 1   GAYKYIRELWKKKQSDVMRFLLRVRCWEYRQLPAIVRVERPTRPDKARRLGYKAKQG--- 57

Query: 62  PRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMG 121
                        ++              I+R+RV   R+       P+  R  K +RMG
Sbjct: 58  -------------YV--------------IYRVRV---RRGGRKRPRPKGGRYGKPKRMG 87

Query: 122 YRAKQVTLFSVQRYDVEEGNVQYPRVPTMNVS--AEDVVTSVFLKLLL-----AIRRDPK 174
               +    S+Q    E    + P +  +N     +D     +  +L+     AIR DP+
Sbjct: 88  VNKLKPAK-SLQSIAEERAGRKCPNLRVLNSYWVGQDGTYKYYEVILVDPSHPAIRNDPR 146

Query: 175 VNWICKPVHKHREMRGLTSISKKSRGL-GKGHGFAQTIGGSRHAAW 219
           +NWICKPVHKHRE RGLTS  +KSRGL GKGHG  +T   S  A W
Sbjct: 147 INWICKPVHKHREFRGLTSAGRKSRGLRGKGHGTEKTR-PSIRANW 191

Length = 192

>gnl|CDD|185402 PTZ00026, PTZ00026, 60S ribosomal protein L15; Provisional

 Score =  146 bits (370), Expect = 4e-44
 Identities = 89/207 (42%), Positives = 117/207 (56%), Gaps = 48/207 (23%)

Query: 70  MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTL 129
           MGAY++++EL++KKQSDVMR++ R+R W+YRQL  +HR  RPTRPDKARR+GY+AKQ   
Sbjct: 1   MGAYKYLNELWKKKQSDVMRFLLRVRTWEYRQLPVIHRVSRPTRPDKARRLGYKAKQG-- 58

Query: 130 FSVQRYDVEEGNVQYP-------------------RVPTMNVSAEDVV------------ 158
           F + R  V  G  + P                       +   AE+ V            
Sbjct: 59  FVIYRVRVRRGGRKRPVRKGIVYGKPKTQGVNKLKSTRNLRAVAEERVGKRCGNLRVLNS 118

Query: 159 -------TSVFLKLLL------AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKG 204
                  T  F +++L      AIR DP++NWIC PVHKHRE+RGLTS  +KSRGL  KG
Sbjct: 119 YWVGQDSTYKFYEVILVDPFHNAIRNDPRINWICNPVHKHRELRGLTSAGRKSRGLRVKG 178

Query: 205 HGFAQTIGGSRHAAWVRRNTLELRRKR 231
           H  ++ +  SR A W RRN + LRR R
Sbjct: 179 HRASK-LRPSRRANWKRRNRIVLRRYR 204

Length = 204

>gnl|CDD|224547 COG1632, RPL15A, Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]

 Score =  102 bits (256), Expect = 4e-27
 Identities = 75/238 (31%), Positives = 111/238 (46%), Gaps = 52/238 (21%)

Query: 1   MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGK 60
             AY++I E ++K +  V+R + R R+ ++R+  ++ R  RPTR D+AR +GY+AKQG  
Sbjct: 2   RSAYKYIREAWKKPKESVVRELLRQRLIEWRKEPSIVRIERPTRLDRARALGYKAKQG-- 59

Query: 61  LPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRM 120
                         ++              + R+RV +  +        RP +  +  RM
Sbjct: 60  --------------YV--------------VVRVRVRRGGR-----NRKRPKKGRRPTRM 86

Query: 121 GYRAKQVTLFSVQRYDVEEGNVQYPRVPTMNV--SAEDVVTSVFLKLLL-----AIRRDP 173
           G   K     S+Q    E    +YP +  +N     ED     F  +L+     AI+ DP
Sbjct: 87  GVN-KIKRKKSLQFIAEERAGRKYPNLEVLNSYWVGEDGYYKYFEVILVDPRHPAIKNDP 145

Query: 174 KVNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVRRNTLELRRKR 231
            +NWIC+PVHK R  RGLTS  KKSRGL KG          + A   R +T  L+R R
Sbjct: 146 NLNWICRPVHKGRVFRGLTSAGKKSRGLRKGG---------KGAEKKRPSTRALQRYR 194

Length = 195

>gnl|CDD|185402 PTZ00026, PTZ00026, 60S ribosomal protein L15; Provisional

 Score = 92.9 bits (231), Expect = 2e-23
 Identities = 39/58 (67%), Positives = 52/58 (89%)

Query: 1  MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQG 58
          MGAY++++EL++KKQSDVMR++ R+R W+YRQL  +HR  RPTRPDKARR+GY+AKQG
Sbjct: 1  MGAYKYLNELWKKKQSDVMRFLLRVRTWEYRQLPVIHRVSRPTRPDKARRLGYKAKQG 58

Length = 204

>gnl|CDD|235263 PRK04243, PRK04243, 50S ribosomal protein L15e; Validated

 Score = 69.2 bits (170), Expect = 1e-14
 Identities = 62/211 (29%), Positives = 93/211 (44%), Gaps = 43/211 (20%)

Query: 1   MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGK 60
           M  Y +I E +++ +   +  +   R+ ++R+   + R  RPTR D+AR +GY+AKQG  
Sbjct: 3   MSMYSYIREAWKRPKESYVGELMWQRLQEWRREPAVVRIERPTRLDRARALGYKAKQG-- 60

Query: 61  LPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRM 120
                          +              + R+RV +        R PRP    + +RM
Sbjct: 61  --------------IV--------------VVRVRVRRGGL-----RKPRPKGGRRPKRM 87

Query: 121 GYRAKQVTLFSVQRYDVEEGNVQYPRVPTMNVS--AEDVVTSVFLKLLL-----AIRRDP 173
           G   K     S+QR   E    +YP +  +N     ED     +  +L+     AI+ DP
Sbjct: 88  GVN-KITPAKSIQRIAEERAARKYPNLEVLNSYWVGEDGKYKWYEVILVDPHHPAIKNDP 146

Query: 174 KVNWICKPVHKHREMRGLTSISKKSRGLGKG 204
            +NWIC   H+ R  RGLTS  KK RGL K 
Sbjct: 147 DLNWICDKSHRGRVFRGLTSAGKKGRGLRKK 177

Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	231
KOG1678|consensus	204		100.0
PTZ00026	204	60S ribosomal protein L15; Provisional	100.0
PF00827	192	Ribosomal_L15e: Ribosomal L15; InterPro: IPR000439	100.0
PRK04243	196	50S ribosomal protein L15e; Validated	100.0
COG1632	195	RPL15A Ribosomal protein L15E [Translation, riboso	100.0
PTZ00026	204	60S ribosomal protein L15; Provisional	100.0
PRK04243	196	50S ribosomal protein L15e; Validated	100.0
KOG1678|consensus	204		99.98
PF00827	192	Ribosomal_L15e: Ribosomal L15; InterPro: IPR000439	99.97
COG1632	195	RPL15A Ribosomal protein L15E [Translation, riboso	99.91

>KOG1678|consensus

Probab=100.00  E-value=9.1e-81  Score=530.61  Aligned_cols=160  Identities=62%  Similarity=1.115  Sum_probs=158.1

Q ss_pred             chHHHHHHHHHhhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccccccccceeEEEEEEEeecCCCCCC---
Q psy7821          70 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPR---  146 (231)
Q Consensus        70 MgaYKYV~elwrkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGyKaKqG~~~vi~Rv~vrRggrK~p~---  146 (231)
                      ||||+|++|||++||||||+||+|+|||||||+++|||+++||+||+|++||||||||  ||||||+|++||+|+|+   
T Consensus         1 MgAykY~~El~rkKQSDvmrfLlRvr~weYrQ~~~~hr~~rPtrpdkARrLGYkAKQG--~viYrirVrrG~rKrpvpkG   78 (204)
T KOG1678|consen    1 MGAYKYLQELWRKKQSDVMRFLLRVRCWEYRQLSAIHRAPRPTRPDKARRLGYKAKQG--YVIYRIRVRRGGRKRPVPKG   78 (204)
T ss_pred             CcHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcCCCCCCchHHHhccccccce--eEEEEEEEecCCccCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999  99999999999999999   


Q ss_pred             ----CC------------Ccchhhhhh----------ccc---------hhhhhh------hhhhcCCCCcccccCCccc
Q psy7821         147 ----VP------------TMNVSAEDV----------VTS---------VFLKLL------LAIRRDPKVNWICKPVHKH  185 (231)
Q Consensus       147 ----kp------------~~q~iaeer----------lnS---------k~~EvI------~~Ir~d~~~~wi~~~~hk~  185 (231)
                          ||            |+|++||||          |||         ||||||      +||++||+|||||+|||||
T Consensus        79 ~tyGKp~~~GvnqlK~~rs~qs~AEer~Gr~~g~LrVlNSYWv~qDstYk~fEVIlvDp~h~aIRrdp~~nwI~kpvhKh  158 (204)
T KOG1678|consen   79 ATYGKPVNQGVNQLKFQRSLQSVAEERAGRRCGNLRVLNSYWVNQDSTYKYFEVILVDPFHKAIRRDPRINWICKPVHKH  158 (204)
T ss_pred             CccCCccccchhhhhhhHHHHHHHHHHhhccccceeeeehhhccCccceeeEEEEEECcHHHHHhcCCCcccccchhhhh
Confidence                66            899999999          999         999999      9999999999999999999


Q ss_pred             ccccCCccccccccCCCCCCCcccccCCCccceeeccceeeeeecC
Q psy7821         186 REMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVRRNTLELRRKR  231 (231)
Q Consensus       186 r~~rglTsag~k~rgl~kg~~~~~~~g~s~~a~w~r~n~~~l~r~r  231 (231)
                      ||+|||||||+|||||||||+|++|+|||++|+|+|+|||+|+|||
T Consensus       159 RE~rGLTsagkksrGlgKg~kf~~t~~gs~ra~Wkr~ntl~l~ryr  204 (204)
T KOG1678|consen  159 RELRGLTSAGKKSRGLGKGHKFNKTIGGSRRATWKRRNTLSLHRYR  204 (204)
T ss_pred             HHhcccccccccccCcccccccccCCCchhHHHHhhcccceeeecC
Confidence            9999999999999999999999999999999999999999999997

>PTZ00026 60S ribosomal protein L15; Provisional

Probab=100.00  E-value=4.5e-74  Score=497.61  Aligned_cols=159  Identities=55%  Similarity=0.986  Sum_probs=156.8

Q ss_pred             chHHHHHHHHHhhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccccccccceeEEEEEEEeecCCCCCC---
Q psy7821          70 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPR---  146 (231)
Q Consensus        70 MgaYKYV~elwrkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGyKaKqG~~~vi~Rv~vrRggrK~p~---  146 (231)
                      ||||+||+|+|++||||+|+||+++|||||||+++|+|+++|||||||++||||||||  |||+||+|++||+|+|+   
T Consensus         1 Mg~Y~yi~e~wkkkqsd~~r~l~r~R~we~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG--~vv~RvrVRrGgrkr~~~kg   78 (204)
T PTZ00026          1 MGAYKYLNELWKKKQSDVMRFLLRVRTWEYRQLPVIHRVSRPTRPDKARRLGYKAKQG--FVIYRVRVRRGGRKRPVRKG   78 (204)
T ss_pred             CcHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEcCCCCChhHHHHcCCcccce--EEEEEEEEeeCCCCCCccCC
Confidence            9999999999999999999999999999999999999999999999999999999999  99999999999999998   


Q ss_pred             ----CC------------Ccchhhhhh----------ccc---------hhhhhh------hhhhcCCCCcccccCCccc
Q psy7821         147 ----VP------------TMNVSAEDV----------VTS---------VFLKLL------LAIRRDPKVNWICKPVHKH  185 (231)
Q Consensus       147 ----kp------------~~q~iaeer----------lnS---------k~~EvI------~~Ir~d~~~~wi~~~~hk~  185 (231)
                          ||            |||+|||||          |||         ||||||      |+|++||+|||||+|+|||
T Consensus        79 ~~~gkpk~~Gv~~lk~~kslq~iAEeRv~rk~~nLrVLNSYWV~qDg~yK~yEVILvDp~H~aIr~Dp~~nWI~~~~hk~  158 (204)
T PTZ00026         79 IVYGKPKTQGVNKLKSTRNLRAVAEERVGKRCGNLRVLNSYWVGQDSTYKFYEVILVDPFHNAIRNDPRINWICNPVHKH  158 (204)
T ss_pred             CCCCCccccCccccCcchhHHHHHHHHhhccCCCcEEecceeEcCCCCcccEEEEEecCCCccceeCcccceecccccch
Confidence                66            899999999          999         999999      9999999999999999999


Q ss_pred             ccccCCccccccccCC-CCCCCcccccCCCccceeeccceeeeeecC
Q psy7821         186 REMRGLTSISKKSRGL-GKGHGFAQTIGGSRHAAWVRRNTLELRRKR  231 (231)
Q Consensus       186 r~~rglTsag~k~rgl-~kg~~~~~~~g~s~~a~w~r~n~~~l~r~r  231 (231)
                      ||||||||||+|+||| +|||+++||+ ||++|+|+++|||+|+|||
T Consensus       159 Re~RGLTsAGkK~RGL~~kG~~~~k~r-~s~ra~~~r~n~~~l~r~r  204 (204)
T PTZ00026        159 RELRGLTSAGRKSRGLRVKGHRASKLR-PSRRANWKRRNRIVLRRYR  204 (204)
T ss_pred             hhhccccccccccCCcCCCCCCcccCC-cchhhhhhhccceeeEecC
Confidence            9999999999999999 9999999998 9999999999999999997

>PF00827 Ribosomal_L15e: Ribosomal L15; InterPro: IPR000439 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=4e-71  Score=476.14  Aligned_cols=173  Identities=53%  Similarity=0.923  Sum_probs=147.9

Q ss_pred             chHHHHHHHHhccCchHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhccccccceEEeecCCCccchHHHHHHHHHh
Q psy7821           2 GAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELYR   81 (231)
Q Consensus         2 gaYkYi~elwkkkqsd~~~~l~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~vv~R~~~s~~MgaYKYV~elwr   81 (231)
                      |||+||+|+|++||||+|+||+++|||||||+|+|||||+||||||||+|||||||||||+|++|              +
T Consensus         1 g~Ykyi~e~wk~k~~d~~~~l~r~R~~e~R~~~av~Ri~rPtR~dkAR~LGYKAKQG~vv~RvrV--------------r   66 (192)
T PF00827_consen    1 GAYKYIRELWKKKQSDVMRFLLRIRLWEWRQLPAVHRIERPTRPDKARRLGYKAKQGYVVYRVRV--------------R   66 (192)
T ss_dssp             -SHHHHHHHHHTTTSHHHHHHHHHHHHHHHHS-SEEEESS-SSHHHHHHTT-SSSTTEEEEEEEE--------------E
T ss_pred             CHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEECCCCCCccHHHHcCCccCCeEEEEEEEE--------------e
Confidence            79999999999999999999999999999999999999999999999999999999999999999              3


Q ss_pred             hhcchhHHHHHhhhhhhhccCCceeeeCCCCCCc--hhhhccc-cccccceeEEEEEEEeecCCCCCCCCCcchhhhhhc
Q psy7821          82 KKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPD--KARRMGY-RAKQVTLFSVQRYDVEEGNVQYPRVPTMNVSAEDVV  158 (231)
Q Consensus        82 kkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~d--rArrLGy-KaKqG~~~vi~Rv~vrRggrK~p~kp~~q~iaeerl  158 (231)
                      +                   ++  .+.++|..+.  |++++|. ++|.+  .+++.|+|+|+|+++||   |.     -|
T Consensus        67 r-------------------Gg--rkr~~~kg~~~gKPk~~Gv~~~k~~--kslq~iAEeRagrk~~n---Lr-----VL  115 (192)
T PF00827_consen   67 R-------------------GG--RKRPRPKGGRYGKPKHQGVNQLKPA--KSLQSIAEERAGRKYPN---LR-----VL  115 (192)
T ss_dssp             S-------------------SS-----SSSSSSSTSSCGGSSSTSS--S--S-HHHHHHHHHHHHSTT---SE-----EE
T ss_pred             c-------------------CC--CCCcccCCccccccccceeeccCcc--ccHHHHhhhhhccccCC---ce-----EE
Confidence            3                   56  7889999999  9999999 89988  55555555555555533   21     29


Q ss_pred             cc---------hhhhhh------hhhhcCCCCcccccCCcccccccCCccccccccCC-CCCCCcccccCCCccceee
Q psy7821         159 TS---------VFLKLL------LAIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKGHGFAQTIGGSRHAAWV  220 (231)
Q Consensus       159 nS---------k~~EvI------~~Ir~d~~~~wi~~~~hk~r~~rglTsag~k~rgl-~kg~~~~~~~g~s~~a~w~  220 (231)
                      ||         ||||||      |+|++||+|||||+|+|||||||||||||+|+||| +|||+++||+ ||.+|+|+
T Consensus       116 nSYwV~eDg~yK~fEVIlVDp~h~~Ir~D~~~nWI~~~~hk~R~~RGLTsAgkk~RGL~~kG~~~~k~r-pS~ra~wk  192 (192)
T PF00827_consen  116 NSYWVGEDGTYKWFEVILVDPNHPAIRNDPDINWICNPVHKHREFRGLTSAGKKSRGLRGKGHGAEKTR-PSRRANWK  192 (192)
T ss_dssp             EEEEEEEESSEEEEEEEEE-TTSHHHHTTTTTGGGGSGGGTTTTTTTTSHHHHHHTTTT-SSTTCGGTS-STTTTTCC
T ss_pred             eeEEeCCCCcceeEEEEEecCCcHHHhcCCccceecccccCccccccccchhhhhcccccCccccccCC-cccccccC
Confidence            99         999999      99999999999999999999999999999999999 9999999999 99999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities []. One of these families consists of: Mammalian L15. Insect L15. Plant L15. Yeast YL10 (L13) (Rp15r). Archaebacterial L15e. These proteins have about 200 amino acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_P 4A1E_L 4A17_L 4A1A_L 4A1C_L 2ZKR_m 3IZS_P 1S1I_L 3O58_O 3O5H_O ....

>PRK04243 50S ribosomal protein L15e; Validated

Probab=100.00  E-value=1e-70  Score=474.35  Aligned_cols=174  Identities=36%  Similarity=0.604  Sum_probs=164.0

Q ss_pred             CchHHHHHHHHhccCchHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhccccccceEEeecCCCccchHHHHHHHHH
Q psy7821           1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELY   80 (231)
Q Consensus         1 mgaYkYi~elwkkkqsd~~~~l~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~vv~R~~~s~~MgaYKYV~elw   80 (231)
                      ||||+||+|+|++||||+|+||+++|||||||+|+||||++||||||||+|||||||||||+|++|              
T Consensus         3 m~~Y~yi~e~wkk~~~~~~~~L~r~R~~e~R~~~~i~Rv~rPTR~DrAR~LGYKAKQG~vv~RvrV--------------   68 (196)
T PRK04243          3 MSMYSYIREAWKRPKESYVGELMWQRLQEWRREPAVVRIERPTRLDRARALGYKAKQGIVVVRVRV--------------   68 (196)
T ss_pred             ccHHHHHHHHHhccchHHHHHHHHHHHHHHhccCceEEcCCCCChhHHHHcCccccceEEEEEEEe--------------
Confidence            899999999999999999999999999999999999999999999999999999999999999999              


Q ss_pred             hhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccc-cccccceeEEEEEEEeecCCCCCCCCCcchhhhhhcc
Q psy7821          81 RKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGY-RAKQVTLFSVQRYDVEEGNVQYPRVPTMNVSAEDVVT  159 (231)
Q Consensus        81 rkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGy-KaKqG~~~vi~Rv~vrRggrK~p~kp~~q~iaeerln  159 (231)
                      ++                   ++  .+.++|..+.|+++||+ ++|+.  .+++.|+|||+|+++||   |     |-||
T Consensus        69 Rr-------------------Gg--rkr~~~kg~~kPk~~Gv~~lk~~--kslq~iAEERa~rk~~n---l-----rVLN  117 (196)
T PRK04243         69 RR-------------------GG--LRKPRPKGGRRPKRMGVNKITPA--KSIQRIAEERAARKYPN---L-----EVLN  117 (196)
T ss_pred             cc-------------------CC--CCCCCcCCCCCccccCccccchh--hhHHHHHHHHhhccCCC---c-----Eeee
Confidence            33                   66  78999999999999999 89999  99999999999999965   2     1399


Q ss_pred             c---------hhhhhh------hhhhcCCCCcccccCCcccccccCCccccccccCC-CCCCCcccccCCCccceee
Q psy7821         160 S---------VFLKLL------LAIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKGHGFAQTIGGSRHAAWV  220 (231)
Q Consensus       160 S---------k~~EvI------~~Ir~d~~~~wi~~~~hk~r~~rglTsag~k~rgl-~kg~~~~~~~g~s~~a~w~  220 (231)
                      |         ||||||      |+|++||+|||||+|+|||||||||||||+|+||| +|||+++||+ ||.+|+=+
T Consensus       118 SYwV~qDg~yK~fEVIlVDp~H~aIr~Dp~~nWI~~~~~k~R~~RGLTSAGkK~RGl~~kg~~~~k~r-ps~ra~~~  193 (196)
T PRK04243        118 SYWVGEDGKYKWYEVILVDPHHPAIKNDPDLNWICDKSHRGRVFRGLTSAGKKGRGLRKKGKGTEKVR-PSIRANER  193 (196)
T ss_pred             eeEeccCCCcccEEEEEecCCCcchhcCcccceecccccchhhhhcccccccccccccccCCCceecC-cccccccc
Confidence            9         999999      99999999999999999999999999999999999 9999999998 89888744

>COG1632 RPL15A Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.6e-57  Score=391.32  Aligned_cols=177  Identities=40%  Similarity=0.665  Sum_probs=164.0

Q ss_pred             CchHHHHHHHHhccCchHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhccccccceEEeecCCCccchHHHHHHHHH
Q psy7821           1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELY   80 (231)
Q Consensus         1 mgaYkYi~elwkkkqsd~~~~l~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~vv~R~~~s~~MgaYKYV~elw   80 (231)
                      ||||+||.|+|++++++++.+|+++|+|+||++|+|+||++|||+|+||.|||||||||||+|++|              
T Consensus         2 ~~~y~yv~e~wkk~~~~~~~~l~~~r~~~wR~~~~i~R~erPTrldrAR~LGykaKqG~vvvrvrV--------------   67 (195)
T COG1632           2 RSAYKYIREAWKKPKESVVRELLRQRLIEWRKEPSIVRIERPTRLDRARALGYKAKQGYVVVRVRV--------------   67 (195)
T ss_pred             ccHHHHHHHHHhCchHHHHhHHHhHHHHhhccCCceEEecCCCHHHHHHhcCCcccCceEEEEEee--------------
Confidence            689999999999999999999999999999999999999999999999999999999999999999              


Q ss_pred             hhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccc-cccccceeEEEEEEEeecCCCCCCCCCcchhhhhhcc
Q psy7821          81 RKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGY-RAKQVTLFSVQRYDVEEGNVQYPRVPTMNVSAEDVVT  159 (231)
Q Consensus        81 rkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGy-KaKqG~~~vi~Rv~vrRggrK~p~kp~~q~iaeerln  159 (231)
                      ++                   ++  .+.+||..++++.+||+ +++.+  .++++|+|+++|+|+||   |     |-||
T Consensus        68 rr-------------------G~--~~~~r~~~grrp~~mgvnki~~~--ks~~~iAEerA~RK~pN---L-----~vLn  116 (195)
T COG1632          68 RR-------------------GG--RNRKRPKKGRRPTRMGVNKIKRK--KSLQFIAEERAGRKYPN---L-----EVLN  116 (195)
T ss_pred             ec-------------------cc--ccCcCccCCCCcCcccccccChh--hhHHHHHHHHhhccCCC---c-----Eeee
Confidence            22                   44  67889999999999999 99999  99999999999999966   3     2388


Q ss_pred             c---------hhhhhh------hhhhcCCCCcccccCCcccccccCCccccccccCCCCCCCcccccCCCccceeeccce
Q psy7821         160 S---------VFLKLL------LAIRRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVRRNT  224 (231)
Q Consensus       160 S---------k~~EvI------~~Ir~d~~~~wi~~~~hk~r~~rglTsag~k~rgl~kg~~~~~~~g~s~~a~w~r~n~  224 (231)
                      |         ||||||      |||++||+|||||+++|+||++|||||||+|+|||.+|++         .+.|.|.++
T Consensus       117 SYwVgeDg~yK~fEvIlvDp~H~aIk~Dp~l~wI~~~~~kgR~~RgltsagkK~rgl~k~~k---------~~~~~R~~~  187 (195)
T COG1632         117 SYWVGEDGYYKYFEVILVDPRHPAIKNDPNLNWICRPVHKGRVFRGLTSAGKKSRGLRKGGK---------GAEKKRPST  187 (195)
T ss_pred             eEEeccccceeeEEEEEecCCChhhcCCCceeeecccccCCceeccccccchhhhhhhccCC---------cccccCcch
Confidence            8         999999      9999999999999999999999999999999999988774         678888888


Q ss_pred             eeeeecC
Q psy7821         225 LELRRKR  231 (231)
Q Consensus       225 ~~l~r~r  231 (231)
                      ..+.+|+
T Consensus       188 ~~~~~~~  194 (195)
T COG1632         188 RALQRYR  194 (195)
T ss_pred             hhhhhhc
Confidence            8887764

>PTZ00026 60S ribosomal protein L15; Provisional

Probab=100.00  E-value=6.6e-39  Score=278.44  Aligned_cols=109  Identities=42%  Similarity=0.729  Sum_probs=104.5

Q ss_pred             CchHHHHHHHHhccCchHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhccccccceEEeecCCCccchHHHHHHHHH
Q psy7821           1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELY   80 (231)
Q Consensus         1 mgaYkYi~elwkkkqsd~~~~l~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~vv~R~~~s~~MgaYKYV~elw   80 (231)
                      ||||+||+|+|++||||+|+||+++|||||||+|+||||++||||||||+|||||||||||+|++|              
T Consensus         1 Mg~Y~yi~e~wkkkqsd~~r~l~r~R~we~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrV--------------   66 (204)
T PTZ00026          1 MGAYKYLNELWKKKQSDVMRFLLRVRTWEYRQLPVIHRVSRPTRPDKARRLGYKAKQGFVIYRVRV--------------   66 (204)
T ss_pred             CcHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEcCCCCChhHHHHcCCcccceEEEEEEEE--------------
Confidence            999999999999999999999999999999999999999999999999999999999999999999              


Q ss_pred             hhhcchhHHHHHhhhhhhhccCCceeeeCCCCC--Cchhhhccc-cccccceeEEEEEEEeecCCCCCC
Q psy7821          81 RKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTR--PDKARRMGY-RAKQVTLFSVQRYDVEEGNVQYPR  146 (231)
Q Consensus        81 rkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr--~drArrLGy-KaKqG~~~vi~Rv~vrRggrK~p~  146 (231)
                      ++                   ++  .+.++|..  ..|++++|+ ++|..  .+++.|+|+|+|+++||
T Consensus        67 Rr-------------------Gg--rkr~~~kg~~~gkpk~~Gv~~lk~~--kslq~iAEeRv~rk~~n  112 (204)
T PTZ00026         67 RR-------------------GG--RKRPVRKGIVYGKPKTQGVNKLKST--RNLRAVAEERVGKRCGN  112 (204)
T ss_pred             ee-------------------CC--CCCCccCCCCCCCccccCccccCcc--hhHHHHHHHHhhccCCC
Confidence            33                   55  78889998  689999999 99999  99999999999999999

>PRK04243 50S ribosomal protein L15e; Validated

Probab=100.00  E-value=1.5e-36  Score=262.41  Aligned_cols=132  Identities=29%  Similarity=0.445  Sum_probs=112.5

Q ss_pred             cchHHHHHHHHHhhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccccccccceeEEEEEEEeecCCCCCC--
Q psy7821          69 IMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPR--  146 (231)
Q Consensus        69 ~MgaYKYV~elwrkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGyKaKqG~~~vi~Rv~vrRggrK~p~--  146 (231)
                      .||||+||+|+|+++|||+|+||+++|||||||+++|+|++||||||||++||||||||  |||+||+|+|||+|+|+  
T Consensus         2 ~m~~Y~yi~e~wkk~~~~~~~~L~r~R~~e~R~~~~i~Rv~rPTR~DrAR~LGYKAKQG--~vv~RvrVRrGgrkr~~~k   79 (196)
T PRK04243          2 AMSMYSYIREAWKRPKESYVGELMWQRLQEWRREPAVVRIERPTRLDRARALGYKAKQG--IVVVRVRVRRGGLRKPRPK   79 (196)
T ss_pred             cccHHHHHHHHHhccchHHHHHHHHHHHHHHhccCceEEcCCCCChhHHHHcCccccce--EEEEEEEeccCCCCCCCcC
Confidence            49999999999999999999999999999999999999999999999999999999999  99999999999999998  


Q ss_pred             ---CC------------Ccchhhhhhccc--hhhhhh--------------hhhhcCCCCcccccCCcccccccCCcc--
Q psy7821         147 ---VP------------TMNVSAEDVVTS--VFLKLL--------------LAIRRDPKVNWICKPVHKHREMRGLTS--  193 (231)
Q Consensus       147 ---kp------------~~q~iaeerlnS--k~~EvI--------------~~Ir~d~~~~wi~~~~hk~r~~rglTs--  193 (231)
                         ||            |+|+|||||..-  .-.||+              ..|--||.-.-|.++-    +...+++  
T Consensus        80 g~~kPk~~Gv~~lk~~kslq~iAEERa~rk~~nlrVLNSYwV~qDg~yK~fEVIlVDp~H~aIr~Dp----~~nWI~~~~  155 (196)
T PRK04243         80 GGRRPKRMGVNKITPAKSIQRIAEERAARKYPNLEVLNSYWVGEDGKYKWYEVILVDPHHPAIKNDP----DLNWICDKS  155 (196)
T ss_pred             CCCCccccCccccchhhhHHHHHHHHhhccCCCcEeeeeeEeccCCCcccEEEEEecCCCcchhcCc----ccceecccc
Confidence               66            899999999666  557888              6777777766666533    4445543  


Q ss_pred             -ccccccCC-CCCCC
Q psy7821         194 -ISKKSRGL-GKGHG  206 (231)
Q Consensus       194 -ag~k~rgl-~kg~~  206 (231)
                       -++-.||| .-|.+
T Consensus       156 ~k~R~~RGLTSAGkK  170 (196)
T PRK04243        156 HRGRVFRGLTSAGKK  170 (196)
T ss_pred             cchhhhhcccccccc
Confidence             45566788 33443

>KOG1678|consensus

Probab=99.98  E-value=9.4e-34  Score=242.38  Aligned_cols=129  Identities=43%  Similarity=0.678  Sum_probs=104.0

Q ss_pred             CchHHHHHHHHhccCchHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhccccccceEEeecCCCccchHHHHHHHHH
Q psy7821           1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELY   80 (231)
Q Consensus         1 mgaYkYi~elwkkkqsd~~~~l~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~vv~R~~~s~~MgaYKYV~elw   80 (231)
                      ||||+||+|||++||||||+||+++|||||||+++|||+++||||||||+|||||||||||.|.+|              
T Consensus         1 MgAykY~~El~rkKQSDvmrfLlRvr~weYrQ~~~~hr~~rPtrpdkARrLGYkAKQG~viYrirV--------------   66 (204)
T KOG1678|consen    1 MGAYKYLQELWRKKQSDVMRFLLRVRCWEYRQLSAIHRAPRPTRPDKARRLGYKAKQGYVIYRIRV--------------   66 (204)
T ss_pred             CcHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcCCCCCCchHHHhccccccceeEEEEEEE--------------
Confidence            999999999999999999999999999999999999999999999999999999999999999998              


Q ss_pred             hhhcchhHHHHHhhhhhhhccCCceeeeCCCCC--Cchhhhccc-cccccceeEEEEEEEeecCCCCCC-C-CCcchhhh
Q psy7821          81 RKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTR--PDKARRMGY-RAKQVTLFSVQRYDVEEGNVQYPR-V-PTMNVSAE  155 (231)
Q Consensus        81 rkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr--~drArrLGy-KaKqG~~~vi~Rv~vrRggrK~p~-k-p~~q~iae  155 (231)
                      ++                   ++  ...+=|..  --++..-|+ ..|.-  -+.+-|+|+|+|++..+ + -|-=.|+|
T Consensus        67 rr-------------------G~--rKrpvpkG~tyGKp~~~GvnqlK~~--rs~qs~AEer~Gr~~g~LrVlNSYWv~q  123 (204)
T KOG1678|consen   67 RR-------------------GG--RKRPVPKGATYGKPVNQGVNQLKFQ--RSLQSVAEERAGRRCGNLRVLNSYWVNQ  123 (204)
T ss_pred             ec-------------------CC--ccCCCCCCCccCCccccchhhhhhh--HHHHHHHHHHhhccccceeeeehhhccC
Confidence            22                   33  12222222  137788888 78888  88999999999999987 1 14444444


Q ss_pred             hh--------ccchhhhhh
Q psy7821         156 DV--------VTSVFLKLL  166 (231)
Q Consensus       156 er--------lnSk~~EvI  166 (231)
                      +-        |=..|+++|
T Consensus       124 DstYk~fEVIlvDp~h~aI  142 (204)
T KOG1678|consen  124 DSTYKYFEVILVDPFHKAI  142 (204)
T ss_pred             ccceeeEEEEEECcHHHHH
Confidence            43        444566666

>PF00827 Ribosomal_L15e: Ribosomal L15; InterPro: IPR000439 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.97  E-value=1.4e-31  Score=231.27  Aligned_cols=125  Identities=45%  Similarity=0.749  Sum_probs=104.4

Q ss_pred             hHHHHHHHHHhhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccccccccceeEEEEEEEeecCCCCCC----
Q psy7821          71 GAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPR----  146 (231)
Q Consensus        71 gaYKYV~elwrkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGyKaKqG~~~vi~Rv~vrRggrK~p~----  146 (231)
                      |||+||+|+|++||||+|+||+++|||||||+++|+|+++||++|||++||||||||  |||+||+|++||+|+|+    
T Consensus         1 g~Ykyi~e~wk~k~~d~~~~l~r~R~~e~R~~~av~Ri~rPtR~dkAR~LGYKAKQG--~vv~RvrVrrGgrkr~~~kg~   78 (192)
T PF00827_consen    1 GAYKYIRELWKKKQSDVMRFLLRIRLWEWRQLPAVHRIERPTRPDKARRLGYKAKQG--YVVYRVRVRRGGRKRPRPKGG   78 (192)
T ss_dssp             -SHHHHHHHHHTTTSHHHHHHHHHHHHHHHHS-SEEEESS-SSHHHHHHTT-SSSTT--EEEEEEEEESSS---SSSSSS
T ss_pred             CHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEECCCCCCccHHHHcCCccCCe--EEEEEEEEecCCCCCcccCCc
Confidence            799999999999999999999999999999999999999999999999999999999  99999999999999998    


Q ss_pred             ---CC------------Ccchhhhhhccc--hhhhhh--------------hhhhcCCCCcccccCCcccccccCCccc-
Q psy7821         147 ---VP------------TMNVSAEDVVTS--VFLKLL--------------LAIRRDPKVNWICKPVHKHREMRGLTSI-  194 (231)
Q Consensus       147 ---kp------------~~q~iaeerlnS--k~~EvI--------------~~Ir~d~~~~wi~~~~hk~r~~rglTsa-  194 (231)
                         ||            |||+|||||.+.  .-+||+              ..|--||.-+-|.++-    .+--+++. 
T Consensus        79 ~~gKPk~~Gv~~~k~~kslq~iAEeRagrk~~nLrVLnSYwV~eDg~yK~fEVIlVDp~h~~Ir~D~----~~nWI~~~~  154 (192)
T PF00827_consen   79 RYGKPKHQGVNQLKPAKSLQSIAEERAGRKYPNLRVLNSYWVGEDGTYKWFEVILVDPNHPAIRNDP----DINWICNPV  154 (192)
T ss_dssp             STSSCGGSSSTSS--SS-HHHHHHHHHHHHSTTSEEEEEEEEEEESSEEEEEEEEE-TTSHHHHTTT----TTGGGGSGG
T ss_pred             cccccccceeeccCccccHHHHhhhhhccccCCceEEeeEEeCCCCcceeEEEEEecCCcHHHhcCC----ccceecccc
Confidence               66            899999999887  558998              7888999888888654    44455554 


Q ss_pred             --cccccCC
Q psy7821         195 --SKKSRGL  201 (231)
Q Consensus       195 --g~k~rgl  201 (231)
                        ++-.|||
T Consensus       155 hk~R~~RGL  163 (192)
T PF00827_consen  155 HKHREFRGL  163 (192)
T ss_dssp             GTTTTTTTT
T ss_pred             cCccccccc
Confidence              6777888

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities []. One of these families consists of: Mammalian L15. Insect L15. Plant L15. Yeast YL10 (L13) (Rp15r). Archaebacterial L15e. These proteins have about 200 amino acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_P 4A1E_L 4A17_L 4A1A_L 4A1C_L 2ZKR_m 3IZS_P 1S1I_L 3O58_O 3O5H_O ....

>COG1632 RPL15A Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=9.3e-25  Score=188.79  Aligned_cols=134  Identities=31%  Similarity=0.472  Sum_probs=117.0

Q ss_pred             chHHHHHHHHHhhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccccccccceeEEEEEEEeecCCCC--CC-
Q psy7821          70 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQY--PR-  146 (231)
Q Consensus        70 MgaYKYV~elwrkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGyKaKqG~~~vi~Rv~vrRggrK~--p~-  146 (231)
                      |++|+||.|.|++++++++.+|++.++|+||+.++|+|+++||++|+|+.||||||||  |+|+||+|++||...  |+ 
T Consensus         2 ~~~y~yv~e~wkk~~~~~~~~l~~~r~~~wR~~~~i~R~erPTrldrAR~LGykaKqG--~vvvrvrVrrG~~~~~r~~~   79 (195)
T COG1632           2 RSAYKYIREAWKKPKESVVRELLRQRLIEWRKEPSIVRIERPTRLDRARALGYKAKQG--YVVVRVRVRRGGRNRKRPKK   79 (195)
T ss_pred             ccHHHHHHHHHhCchHHHHhHHHhHHHHhhccCCceEEecCCCHHHHHHhcCCcccCc--eEEEEEeeecccccCcCccC
Confidence            6899999999999999999999999999999999999999999999999999999999  999999999996544  44 


Q ss_pred             --CC------------Ccchhhhhhccc--hhhhhh--------------hhhhcCCCCcccccCCcccccccCCccccc
Q psy7821         147 --VP------------TMNVSAEDVVTS--VFLKLL--------------LAIRRDPKVNWICKPVHKHREMRGLTSISK  196 (231)
Q Consensus       147 --kp------------~~q~iaeerlnS--k~~EvI--------------~~Ir~d~~~~wi~~~~hk~r~~rglTsag~  196 (231)
                        +|            |+|.||||+-+-  ...||+              .+|.=||+-.=|-+.-+=...+. -+.-|+
T Consensus        80 grrp~~mgvnki~~~ks~~~iAEerA~RK~pNL~vLnSYwVgeDg~yK~fEvIlvDp~H~aIk~Dp~l~wI~~-~~~kgR  158 (195)
T COG1632          80 GRRPTRMGVNKIKRKKSLQFIAEERAGRKYPNLEVLNSYWVGEDGYYKYFEVILVDPRHPAIKNDPNLNWICR-PVHKGR  158 (195)
T ss_pred             CCCcCcccccccChhhhHHHHHHHHhhccCCCcEeeeeEEeccccceeeEEEEEecCCChhhcCCCceeeecc-cccCCc
Confidence              55            899999999555  557887              78999998887777666666666 567999


Q ss_pred             cccCC-CCCCC
Q psy7821         197 KSRGL-GKGHG  206 (231)
Q Consensus       197 k~rgl-~kg~~  206 (231)
                      ..||| .-|.+
T Consensus       159 ~~RgltsagkK  169 (195)
T COG1632         159 VFRGLTSAGKK  169 (195)
T ss_pred             eeccccccchh
Confidence            99999 55553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	231
2zkr_m	204	Structure Of A Mammalian Ribosomal 60s Subunit With		6e-44
3izs_P	204	Localization Of The Large Subunit Ribosomal Protein		6e-38
1s1i_L	203	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		3e-37
3jyw_L	192	Structure Of The 60s Proteins For Eukaryotic Riboso		9e-35
3izr_P	204	Localization Of The Large Subunit Ribosomal Protein		1e-32
4a17_L	204	T.Thermophila 60s Ribosomal Subunit In Complex With		1e-28
3zf7_Q	221	High-resolution Cryo-electron Microscopy Structure		1e-21
3j21_M	194	Promiscuous Behavior Of Proteins In Archaeal Riboso		3e-10
1jj2_L	194	Fully Refined Crystal Structure Of The Haloarcula M		2e-08
3cc2_M	196	The Refined Crystal Structure Of The Haloarcula Mar		4e-08
3g4s_M	194	Co-Crystal Structure Of Tiamulin Bound To The Large		5e-08
1yhq_M	194	Crystal Structure Of Azithromycin Bound To The G209		6e-08
1yi2_M	195	Crystal Structure Of Erythromycin Bound To The G209		7e-08
1s72_M	194	Refined Crystal Structure Of The Haloarcula Marismo		7e-08
1vq9_M	195	The Structure Of Cca-Phe-Cap-Bio And The Antibiotic		7e-08
2qa4_M	196	A More Complete Structure Of The The L7L12 STALK OF		7e-08
1ffk_I	194	Crystal Structure Of The Large Ribosomal Subunit Fr		4e-06

>pdb|2ZKR|MM Chain m, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 204

Iteration: 1
 Score =  173 bits (439), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 132/239 (55%), Gaps = 43/239 (17%)
Query: 1   MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGK 60
           MGAY++I EL+RKKQSDVMR++ R+R WQYRQL+ LHRAPRPTRPDKARR+GY+AKQG  
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQG-- 58
Query: 61  LPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRM 120
                                         I+RIRV          + P P      + +
Sbjct: 59  ----------------------------YVIYRIRV-----RRGGRKRPVPKGATYGKPV 85
Query: 121 GYRAKQVTLF-SVQRYDVEEGNVQYPRVPTMNV--SAEDVVTSVFLKLLL-----AIRRD 172
            +   Q+    S+Q    E        +  +N     ED     F  +L+     AIRR+
Sbjct: 86  HHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRN 145
Query: 173 PKVNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVRRNTLELRRKR 231
           P   WI KPVHKHREMRGLTS  +KSRGLGKGH F  TIGGSR AAW RRNTL+L R R
Sbjct: 146 PDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204

>pdb|3IZS|P Chain P, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 204

Iteration: 1
 Score =  154 bits (388), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 92/207 (44%), Positives = 117/207 (56%), Gaps = 49/207 (23%)
Query: 70  MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTL 129
           MGAY+++ EL RKKQSDV+R++ R+RVW+YRQ   +HRA RPTRPDKARR+GY+AKQ   
Sbjct: 1   MGAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQG-- 58
Query: 130 FSVQRYDVEEGNVQYPRVP--------------------TMNVSAEDVV----------- 158
           F + R  V  GN + P VP                    ++  +AE+ V           
Sbjct: 59  FVIYRVRVRRGNRKRP-VPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLN 117
Query: 159 --------TSVFLKLLL------AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKG 204
                   T  + +++L      AIRRD + NWIC PVHKHRE RGLT+  KKSRG+ KG
Sbjct: 118 SYWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGINKG 177
Query: 205 HGFAQTIGGSRHAAWVRRNTLELRRKR 231
           H F  T  G R   W R+NTL L R R
Sbjct: 178 HKFNNTKAG-RRKTWKRQNTLSLWRYR 203

>pdb|1S1I|L Chain L, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 203

Iteration: 1
 Score =  151 bits (381), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 116/206 (56%), Gaps = 49/206 (23%)
Query: 71  GAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLF 130
           GAY+++ EL RKKQSDV+R++ R+RVW+YRQ   +HRA RPTRPDKARR+GY+AKQ   F
Sbjct: 1   GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQG--F 58
Query: 131 SVQRYDVEEGNVQYPRVP--------------------TMNVSAEDVV------------ 158
            + R  V  GN + P VP                    ++  +AE+ V            
Sbjct: 59  VIYRVRVRRGNRKRP-VPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNS 117
Query: 159 -------TSVFLKLLL------AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKGH 205
                  T  + +++L      AIRRD + NWIC PVHKHRE RGLT+  KKSRG+ KGH
Sbjct: 118 YWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGINKGH 177
Query: 206 GFAQTIGGSRHAAWVRRNTLELRRKR 231
            F  T  G R   W R+NTL L R R
Sbjct: 178 KFNNTKAG-RRKTWKRQNTLSLWRYR 202

>pdb|3JYW|L Chain L, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 192

Iteration: 1
 Score =  143 bits (360), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 83/190 (43%), Positives = 107/190 (56%), Gaps = 48/190 (25%)
Query: 71  GAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLF 130
           GAY+++ EL RKKQSDV+R++ R+RVW+YRQ   +HRA RPTRPDKARR+GY+AKQ   F
Sbjct: 1   GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQG--F 58
Query: 131 SVQRYDVEEGNVQYPRVP--------------------TMNVSAEDVV------------ 158
            + R  V  GN + P VP                    ++  +AE+ V            
Sbjct: 59  VIYRVRVRRGNRKRP-VPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNS 117
Query: 159 -------TSVFLKLLL------AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGLGKGH 205
                  T  + +++L      AIRRD + NWIC PVHKHRE RGLT+  KKSRG+ KGH
Sbjct: 118 YWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGINKGH 177
Query: 206 GFAQTIGGSR 215
            F  T  G R
Sbjct: 178 KFNNTKAGRR 187

>pdb|3IZR|P Chain P, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 204

Iteration: 1
 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/208 (42%), Positives = 111/208 (53%), Gaps = 50/208 (24%)
Query: 70  MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQ--- 126
           MGAY+++SEL+R+KQSDVMR++ R+R W+YRQ   + R  RPTRPDKARR+GY+AKQ   
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 127 ----------------------------VTLFSVQRYD---VEE------GNVQYPRVPT 149
                                       +T    QR      EE      G +   RV  
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGL---RVLN 117
Query: 150 MNVSAEDVVTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GK 203
                ED     F  +L+     AIR DP++NW+CKPVHKHRE+RGLTS  KK RGL GK
Sbjct: 118 SYWVNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGK 177
Query: 204 GHGFAQTIGGSRHAAWVRRNTLELRRKR 231
           GH   +    SR A W R  T+ LRR R
Sbjct: 178 GHTHHKA-RPSRRATWKRNQTVSLRRYR 204

>pdb|4A17|L Chain L, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 204

Iteration: 1
 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 123/232 (53%), Gaps = 29/232 (12%)
Query: 1   MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGK 60
           MGAY+++ EL+RKKQSD+M +I R+R W+YRQL  +H+A R +RPDKAR++GY+ K G  
Sbjct: 1   MGAYKYLEELWRKKQSDLMSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDGYA 60
Query: 61  LPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRM 120
           + R               +   K S V   I++++              R  R     R+
Sbjct: 61  IWRVRVRRGGRKRPVSKGIVYGKPSSVG--INQLKF------------ARNLRSCAEERV 106
Query: 121 GYRAKQVTLFSVQRYDVEEGNVQYPRVPTMNVSAEDVVTSVFLKLLLAIRRDPKVNWICK 180
           G R  ++ + +   +  ++G  ++  V   + S              AIR DP++NWIC+
Sbjct: 107 GKRVPELRVLN-SYWVGQDGTYKFYEVILADPSHN------------AIRNDPRINWICE 153
Query: 181 PVHKHREMRGLTSISKKSRGL-GKGHGFAQTIGGSRHAAWVRRNTLELRRKR 231
             HKHRE+RGLTS  +K RGL  KGH  A+++  SR   W  R  L+LRR R
Sbjct: 154 SAHKHRELRGLTSAGRKGRGLRVKGH-RAKSLRTSRKGNWRARQMLKLRRYR 204

>pdb|3ZF7|Q Chain Q, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 221

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 92/179 (51%), Gaps = 43/179 (24%)
Query: 70  MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQ--- 126
           MG++ +++EL++KK SDVMR+I R+R W++R   T+ R  RPTRP+KAR +GY+ KQ   
Sbjct: 18  MGSFMYLNELWKKKSSDVMRFIQRVRAWEFRHQHTIVRLRRPTRPEKARMVGYKTKQGYV 77
Query: 127 ------------------VT-------------------LFSVQRYDVEEGNVQYPRVPT 149
                             +T                   + + QR   + GN++      
Sbjct: 78  VFRVRVRRGGRKRPVHKGITYGKPNTAGVLGRKLNKNNRVVAEQRLGKKYGNLRVLNSYW 137
Query: 150 MNVSAEDVVTSVFL--KLLLAIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKGH 205
           +N  +  +   V     +  AIRRDP++NWI   VHKHRE RGLTS  +K RGL  KGH
Sbjct: 138 VNADSTFLWYEVVAVDPMHRAIRRDPRINWIVNAVHKHREQRGLTSAGRKHRGLRQKGH 196

>pdb|3J21|M Chain M, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 194

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 41/178 (23%)
Query: 70  MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTL 129
           MG Y++I E ++  +   +  + + R+ ++R+   + R  RPTR D+AR +GY+AKQ  +
Sbjct: 1   MGMYKYIREAWKSPKKSYVGELLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYV 60
Query: 130 F---------------------------------SVQRYDVEEGNVQYPRVPTMNV--SA 154
                                             S+Q    E+   ++P +  +N     
Sbjct: 61  IVRVRVRKGGRKRPRWKGGRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVG 120
Query: 155 EDVVTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKGHG 206
           ED +   F  +++      I+ DPK+ WI    HK R  RGLTS  KK RGL  KG G
Sbjct: 121 EDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKGKG 178

>pdb|1JJ2|L Chain L, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 78/176 (44%), Gaps = 41/176 (23%)
Query: 72  AYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLF- 130
           AY +I E +++ +   +  +   R+ ++R    + R  RPTR D+AR +GY+AKQ  +  
Sbjct: 4   AYSYIREAWKRPKEGQIAELMWHRMQEWRNEPAVVRIERPTRLDRARSLGYKAKQGIIVV 63
Query: 131 --------------------------------SVQRYDVEEGNVQYPRVPTMN--VSAED 156
                                           ++QR   E  N ++P +  +N     ED
Sbjct: 64  RVAIRKGSSRRTRFNKGRRSKRMMVNRITRKKNIQRIAEERANRKFPNLRVLNSYSVGED 123
Query: 157 VVTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKGHG 206
                   +L+     AI+ D +++WI +  H+ R  RGLTS  ++ RGL G+G G
Sbjct: 124 GRHKWHEVILIDPDHPAIKSDDQLSWISRTRHRLRTFRGLTSAGRRCRGLRGQGKG 179

>pdb|3CC2|M Chain M, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins Length = 196

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 41/180 (22%)
Query: 72  AYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFS 131
           AY +I + ++      +  +   R  ++R    + R  RPTR DKAR  GY+AKQ  + +
Sbjct: 5   AYSYIRDAWKNPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 64
Query: 132 ---------------------------------VQRYDVEEGNVQYPRVPTMNV--SAED 156
                                            +QR   E  +  +P +  +N     +D
Sbjct: 65  RVSVRKGSARKRRHKAGRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQD 124
Query: 157 VVTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKGHGFAQT 210
                   +L+     AI+ D  ++WIC      R  RGLT   +++RGL GKG G  +T
Sbjct: 125 GRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKT 184

>pdb|3G4S|M Chain M, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 194

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 41/180 (22%)
Query: 72  AYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFS 131
           AY +I + ++      +  +   R  ++R    + R  RPTR DKAR  GY+AKQ  + +
Sbjct: 4   AYSYIRDAWKNPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 63
Query: 132 ---------------------------------VQRYDVEEGNVQYPRVPTMNV--SAED 156
                                            +QR   E  +  +P +  +N     +D
Sbjct: 64  RVSVRKGSARKRRHKAGRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQD 123
Query: 157 VVTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKGHGFAQT 210
                   +L+     AI+ D  ++WIC      R  RGLT   +++RGL GKG G  +T
Sbjct: 124 GRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKT 183

>pdb|1YHQ|M Chain M, Crystal Structure Of Azithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Length = 194

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 41/180 (22%)
Query: 72  AYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFS 131
           AY +I + +       +  +   R  ++R    + R  RPTR DKAR  GY+AKQ  + +
Sbjct: 4   AYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 63
Query: 132 ---------------------------------VQRYDVEEGNVQYPRVPTMNV--SAED 156
                                            +QR   E  +  +P +  +N     +D
Sbjct: 64  RVSVRKGSARKRRHKAGRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQD 123
Query: 157 VVTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKGHGFAQT 210
                   +L+     AI+ D  ++WIC      R  RGLT   +++RGL GKG G  +T
Sbjct: 124 GRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKT 183

>pdb|1YI2|M Chain M, Crystal Structure Of Erythromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Length = 195

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 41/180 (22%)
Query: 72  AYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFS 131
           AY +I + +       +  +   R  ++R    + R  RPTR DKAR  GY+AKQ  + +
Sbjct: 5   AYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 64
Query: 132 ---------------------------------VQRYDVEEGNVQYPRVPTMNV--SAED 156
                                            +QR   E  +  +P +  +N     +D
Sbjct: 65  RVSVRKGSARKRRHKAGRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQD 124
Query: 157 VVTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKGHGFAQT 210
                   +L+     AI+ D  ++WIC      R  RGLT   +++RGL GKG G  +T
Sbjct: 125 GRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKT 184

>pdb|1S72|M Chain M, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 41/180 (22%)
Query: 72  AYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFS 131
           AY +I + +       +  +   R  ++R    + R  RPTR DKAR  GY+AKQ  + +
Sbjct: 4   AYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 63
Query: 132 ---------------------------------VQRYDVEEGNVQYPRVPTMNV--SAED 156
                                            +QR   E  +  +P +  +N     +D
Sbjct: 64  RVSVRKGSARKRRHKAGRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQD 123
Query: 157 VVTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKGHGFAQT 210
                   +L+     AI+ D  ++WIC      R  RGLT   +++RGL GKG G  +T
Sbjct: 124 GRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKT 183

>pdb|1VQ9|M Chain M, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui Length = 195

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 41/180 (22%)
Query: 72  AYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFS 131
           AY +I + +       +  +   R  ++R    + R  RPTR DKAR  GY+AKQ  + +
Sbjct: 5   AYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 64
Query: 132 ---------------------------------VQRYDVEEGNVQYPRVPTMNV--SAED 156
                                            +QR   E  +  +P +  +N     +D
Sbjct: 65  RVSVRKGSARKRRHKAGRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQD 124
Query: 157 VVTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKGHGFAQT 210
                   +L+     AI+ D  ++WIC      R  RGLT   +++RGL GKG G  +T
Sbjct: 125 GRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKT 184

>pdb|2QA4|M Chain M, A More Complete Structure Of The The L7L12 STALK OF THE Haloarcula Marismortui 50s Large Ribosomal Subunit Length = 196

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 41/180 (22%)
Query: 72  AYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFS 131
           AY +I + +       +  +   R  ++R    + R  RPTR DKAR  GY+AKQ  + +
Sbjct: 5   AYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 64
Query: 132 ---------------------------------VQRYDVEEGNVQYPRVPTMNV--SAED 156
                                            +QR   E  +  +P +  +N     +D
Sbjct: 65  RVSVRKGSARKRRHKAGRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQD 124
Query: 157 VVTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKGHGFAQT 210
                   +L+     AI+ D  ++WIC      R  RGLT   +++RGL GKG G  +T
Sbjct: 125 GRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKT 184

>pdb|1FFK|I Chain I, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 43/175 (24%)
Query: 73  YRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLF-- 130
           Y +I E +++     +  +   R+ ++R+   + R PRPTR D+AR +GY+AK+  +   
Sbjct: 5   YAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVR 64
Query: 131 -------------------------------SVQRYDVEEGNVQYPRVPTMNV--SAEDV 157
                                          ++Q    E  N +YP +  +N     ED 
Sbjct: 65  VRIRRGGRRATRPNKGRKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVLNSYWVGEDG 124
Query: 158 VTSVFLKLLL-----AIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKGHG 206
               F  +L+     AI+ DP+++W+ +   + R  RGLTS  +K+RGL  KG G
Sbjct: 125 RYKWFEVILVDRDHPAIKSDPQLSWVSR--TRGRVYRGLTSAGRKARGLRRKGRG 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	231
4a17_L	204	RPL15, ribosomal protein L15; eukaryotic ribosome,	5e-47
3iz5_P	204	60S ribosomal protein L15 (L15E); eukaryotic ribos	5e-45
3jyw_L	192	60S ribosomal protein L15(A); eukaryotic ribosome,	4e-41
1vq8_M	194	50S ribosomal protein L15E; ribosome 50S, protein-	1e-40
1ffk_I	194	Ribosomal protein L15E; ribosome assembly, RNA-RNA	1e-39

>4a17_L RPL15, ribosomal protein L15; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_L 4a1c_L 4a1e_L Length = 204

 Score =  153 bits (388), Expect = 5e-47
 Identities = 77/238 (32%), Positives = 117/238 (49%), Gaps = 41/238 (17%)

Query: 1   MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGK 60
           MGAY+++ EL+RKKQSD+M +I R+R W+YRQL  +H+A R +RPDKAR++GY+ K G  
Sbjct: 1   MGAYKYLEELWRKKQSDLMSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDG-- 58

Query: 61  LPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRM 120
                                         I R+RV +  +   + +     +P      
Sbjct: 59  ----------------------------YAIWRVRVRRGGRKRPVSKGIVYGKPSSVGIN 90

Query: 121 GYRAKQVTLFSVQRYDVEEGNVQYPRVPTMNV--SAEDVVTSVFLKLLL-----AIRRDP 173
             +  +    +++    E    + P +  +N     +D     +  +L      AIR DP
Sbjct: 91  QLKFAR----NLRSCAEERVGKRVPELRVLNSYWVGQDGTYKFYEVILADPSHNAIRNDP 146

Query: 174 KVNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVRRNTLELRRKR 231
           ++NWIC+  HKHRE+RGLTS  +K RGL      A+++  SR   W  R  L+LRR R
Sbjct: 147 RINWICESAHKHRELRGLTSAGRKGRGLRVKGHRAKSLRTSRKGNWRARQMLKLRRYR 204

>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 1s1i_L Length = 192

 Score =  138 bits (348), Expect = 4e-41
 Identities = 87/227 (38%), Positives = 114/227 (50%), Gaps = 42/227 (18%)

Query: 2   GAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKL 61
           GAY+++ EL RKKQSDV+R++ R+RVW+YRQ   +HRA RPTRPDKARR+GY+AKQG   
Sbjct: 1   GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQG--- 57

Query: 62  PRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMG 121
                                        I+R+RV   R+       P+     K    G
Sbjct: 58  ---------------------------FVIYRVRV---RRGNRKRPVPKGATYGKPTNQG 87

Query: 122 YRAKQVTLFSVQRYDVEEGNVQYPRVPTMNVS--AEDVVTSVFLKLLL-----AIRRDPK 174
               +    S++    E    +   +  +N     +D     F  +L+     AIRRD +
Sbjct: 88  VNELKYQR-SLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQHKAIRRDAR 146

Query: 175 VNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVR 221
            NWIC PVHKHRE RGLT+  KKSRG+ KGH F  T  G R   W R
Sbjct: 147 YNWICDPVHKHREARGLTATGKKSRGINKGHKFNNTKAGRR-KTWKR 192

>1vq8_M 50S ribosomal protein L15E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.2 PDB: 1vq4_M* 1vq5_M* 1vq6_M* 1vq7_M* 1s72_M* 1vqn_M* 2otj_M* 2otl_M* 2qex_M* 2qa4_M* 1vqo_M* 1vq9_M* 1vql_M* 1vqm_M* 1vqk_M* 1vqp_M* 1yij_M* 1yi2_M* 1yit_M* 1yj9_M* ... Length = 194

 Score =  136 bits (345), Expect = 1e-40
 Identities = 48/228 (21%), Positives = 82/228 (35%), Gaps = 43/228 (18%)

Query: 1   MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGK 60
             AY +I + +       +  +   R  ++R    + R  RPTR DKAR  GY+AKQG  
Sbjct: 2   RSAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQG-- 59

Query: 61  LPRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRM 120
                                         + R+ V +        R  R     +++R 
Sbjct: 60  ----------------------------VIVARVSVRKGS-----ARKRRHKAGRRSKRQ 86

Query: 121 GYRAKQVTLFSVQRYDVEEGNVQYPRVPTMNV--SAEDVVTSVFLKLLL-----AIRRDP 173
           G   +      +QR   E  +  +P +  +N     +D        +L+     AI+ D 
Sbjct: 87  GVT-RITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDD 145

Query: 174 KVNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVR 221
            ++WIC      R  RGLT   +++RGL      ++    S  +   +
Sbjct: 146 DLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRSNGGK 193

>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2 Length = 194

 Score =  134 bits (338), Expect = 1e-39
 Identities = 55/229 (24%), Positives = 101/229 (44%), Gaps = 45/229 (19%)

Query: 2   GAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKL 61
             Y +I E +++     +  +   R+ ++R+   + R PRPTR D+AR +GY+AK+G   
Sbjct: 3   SMYAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKG--- 59

Query: 62  PRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMG 121
                                        + R+R+ +        RA RP +  K+++M 
Sbjct: 60  ---------------------------IIVVRVRIRRGG-----RRATRPNKGRKSKKMM 87

Query: 122 YRAKQVTLFSVQRYDVEEGNVQYPRVPTMNVS--AEDVVTSVFLKLLL-----AIRRDPK 174
              +     ++Q    E  N +YP +  +N     ED     F  +L+     AI+ DP+
Sbjct: 88  VNRRPRKK-NLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQ 146

Query: 175 VNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVRRN 223
           ++W+ +   + R  RGLTS  +K+RGL +    A+ +  S  A + ++ 
Sbjct: 147 LSWVSR--TRGRVYRGLTSAGRKARGLRRKGRGAEKVRPSLRANFRKKR 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	231
3iz5_P	204	60S ribosomal protein L15 (L15E); eukaryotic ribos	100.0
4a17_L	204	RPL15, ribosomal protein L15; eukaryotic ribosome,	100.0
1vq8_M	194	50S ribosomal protein L15E; ribosome 50S, protein-	100.0
3j21_M	194	50S ribosomal protein L15E; archaea, archaeal, KIN	100.0
3jyw_L	192	60S ribosomal protein L15(A); eukaryotic ribosome,	100.0
1ffk_I	194	Ribosomal protein L15E; ribosome assembly, RNA-RNA	100.0
1ffk_I	194	Ribosomal protein L15E; ribosome assembly, RNA-RNA	100.0
4a17_L	204	RPL15, ribosomal protein L15; eukaryotic ribosome,	100.0
3jyw_L	192	60S ribosomal protein L15(A); eukaryotic ribosome,	100.0
1vq8_M	194	50S ribosomal protein L15E; ribosome 50S, protein-	99.97
3j21_M	194	50S ribosomal protein L15E; archaea, archaeal, KIN	99.97
3iz5_P	204	60S ribosomal protein L15 (L15E); eukaryotic ribos	99.97

>4a17_L RPL15, ribosomal protein L15; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_L 4a1c_L 4a1e_L

Probab=100.00  E-value=6.4e-77  Score=514.16  Aligned_cols=159  Identities=48%  Similarity=0.901  Sum_probs=156.1

Q ss_pred             chHHHHHHHHHhhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccccccccceeEEEEEEEeecCCCCCC---
Q psy7821          70 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPR---  146 (231)
Q Consensus        70 MgaYKYV~elwrkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGyKaKqG~~~vi~Rv~vrRggrK~p~---  146 (231)
                      ||||+||+|+|++||||+|+||+++|||||||+++|+|+++||+||||++||||||||  |||+||+|++||+|+|+   
T Consensus         1 mg~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG--~Vv~RvrVRrGgrkrp~pkg   78 (204)
T 4a17_L            1 MGAYKYLEELWRKKQSDLMSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDG--YAIWRVRVRRGGRKRPVSKG   78 (204)
T ss_dssp             -CHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHSCSEEEESSCSCHHHHHHTTCCSSTT--EEEEEEEEECSCCCCCCGGG
T ss_pred             CcHHHHHHHHHhccccHHHHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCe--eEEEEEEEeeCCCCCCccCC
Confidence            9999999999999999999999999999999999999999999999999999999999  99999999999999999   


Q ss_pred             ----CC------------Ccchhhhhh----------ccc---------hhhhhh------hhhhcCCCCcccccCCccc
Q psy7821         147 ----VP------------TMNVSAEDV----------VTS---------VFLKLL------LAIRRDPKVNWICKPVHKH  185 (231)
Q Consensus       147 ----kp------------~~q~iaeer----------lnS---------k~~EvI------~~Ir~d~~~~wi~~~~hk~  185 (231)
                          ||            |||+|||||          |||         ||||||      |||++||+|||||+|+|||
T Consensus        79 ~~~~kPk~~Gvn~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~  158 (204)
T 4a17_L           79 IVYGKPSSVGINQLKFARNLRSCAEERVGKRVPELRVLNSYWVGQDGTYKFYEVILADPSHNAIRNDPRINWICESAHKH  158 (204)
T ss_dssp             CCCSCTTTCCCTTCCCSSCHHHHHHHHHHHHSCSSEEEEEEEEECCSSEEEEEEEEECTTSHHHHHCTTTGGGGSGGGTT
T ss_pred             CcccCcccccccccCcchhHHHHHHHHHhccCCCcEEeeeeeecCCCCcceEEEEEecCCchhhccCCccccccCchhcc
Confidence                66            899999999          999         999999      9999999999999999999


Q ss_pred             ccccCCccccccccCC-CCCCCcccccCCCccceeeccceeeeeecC
Q psy7821         186 REMRGLTSISKKSRGL-GKGHGFAQTIGGSRHAAWVRRNTLELRRKR  231 (231)
Q Consensus       186 r~~rglTsag~k~rgl-~kg~~~~~~~g~s~~a~w~r~n~~~l~r~r  231 (231)
                      ||||||||||+|+||| +|||+++||+ ||.+|+|+++|||+|+|||
T Consensus       159 Re~RGLTsAGkk~RGLr~kG~~~~k~r-~s~ra~w~r~ntl~l~r~r  204 (204)
T 4a17_L          159 RELRGLTSAGRKGRGLRVKGHRAKSLR-TSRKGNWRARQMLKLRRYR  204 (204)
T ss_dssp             TTTTTCSHHHHHHTTTTCCSTTTGGGT-TTHHHHHHHHHCCCCCSCC
T ss_pred             ccccCcccccccccccCCCCCCcccCC-cchhhhhhccceeeeEecC
Confidence            9999999999999999 9999999999 9999999999999999997

>1vq8_M 50S ribosomal protein L15E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.2 PDB: 1vq4_M* 1vq5_M* 1vq6_M* 1vq7_M* 1s72_M* 1vqn_M* 2otj_M* 2otl_M* 2qex_M* 2qa4_M* 1vqo_M* 1vq9_M* 1vql_M* 1vqm_M* 1vqk_M* 1vqp_M* 1yij_M* 1yi2_M* 1yit_M* 1yj9_M* ...

Probab=100.00  E-value=1.3e-73  Score=490.19  Aligned_cols=175  Identities=30%  Similarity=0.507  Sum_probs=156.5

Q ss_pred             CchHHHHHHHHhccCchHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhccccccceEEeecCCCccchHHHHHHHHH
Q psy7821           1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELY   80 (231)
Q Consensus         1 mgaYkYi~elwkkkqsd~~~~l~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~vv~R~~~s~~MgaYKYV~elw   80 (231)
                      ||||+||+|+|++||||+|+||+++|||||||+|+||||++||||||||+|||||||||||+|++|              
T Consensus         2 mgaY~Yi~e~wkkkqsd~~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrV--------------   67 (194)
T 1vq8_M            2 RSAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSV--------------   67 (194)
T ss_dssp             CCSHHHHHHHTTSTTSHHHHHHHHHHHHHHTTSCSEEEESSCSSHHHHHHHTCCSSTTEEEEEEEE--------------
T ss_pred             ccHHHHHHHHHhCcchHHHHHHHHHHHHHHhCCCceEEcCCCCChhHHHhcCCccCCeEEEEEEEe--------------
Confidence            899999999999999999999999999999999999999999999999999999999999999999              


Q ss_pred             hhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccc-cccccceeEEEEEEEeecCCCCCCCCCcchhhhhhcc
Q psy7821          81 RKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGY-RAKQVTLFSVQRYDVEEGNVQYPRVPTMNVSAEDVVT  159 (231)
Q Consensus        81 rkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGy-KaKqG~~~vi~Rv~vrRggrK~p~kp~~q~iaeerln  159 (231)
                      +                   .++  .+.++|..+.|++++|+ ++|..  .+++.|+|||+|+++||   |.     -||
T Consensus        68 R-------------------rGg--rkrp~pkg~~kPk~~Gv~~lk~~--rslq~iAEERagrk~~n---Lr-----VLN  116 (194)
T 1vq8_M           68 R-------------------KGS--ARKRRHKAGRRSKRQGVTRITRR--KDIQRVAEERASRTFPN---LR-----VLN  116 (194)
T ss_dssp             E-------------------CSS--CCCCCCSSCCCGGGTCCSSCCCS--SCHHHHHHHHHHHHSTT---CE-----EEE
T ss_pred             c-------------------cCC--CCCCCcCCCCCccccCccccCcc--ccHHHHHHHHHhccCCC---ce-----eee
Confidence            3                   366  78899999999999998 78888  44444444444444422   10     199


Q ss_pred             c---------hhhhhh------hhhhcCCCCcccccCCcccccccCCccccccccCC-CCCCCcccccCCCccceeec
Q psy7821         160 S---------VFLKLL------LAIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKGHGFAQTIGGSRHAAWVR  221 (231)
Q Consensus       160 S---------k~~EvI------~~Ir~d~~~~wi~~~~hk~r~~rglTsag~k~rgl-~kg~~~~~~~g~s~~a~w~r  221 (231)
                      |         ||||||      |||++||+|||||+|+|||||||||||||+|+||| +|||+++||+ ||.+|+|++
T Consensus       117 SYWV~eD~~yK~yEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re~RGLTsaGkk~RGL~~kG~~~~k~~-~~~ra~w~~  193 (194)
T 1vq8_M          117 SYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTR-PSLRSNGGK  193 (194)
T ss_dssp             EEEEEEETTEEEEEEEEECTTCHHHHTCTTTGGGGSGGGTTGGGGTCSHHHHHHTTCSCSSTTCTTTS-SCTTTTTSC
T ss_pred             eEEeccCCceeEEEEEEEcCCcHhhhcCcccccccCcccccchhccccccccccCccCCCCCCcccCC-cccchhhcc
Confidence            9         999999      99999999999999999999999999999999999 8999999998 669999986

>3j21_M 50S ribosomal protein L15E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.8e-72  Score=483.41  Aligned_cols=175  Identities=33%  Similarity=0.534  Sum_probs=157.5

Q ss_pred             CchHHHHHHHHhccCchHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhccccccceEEeecCCCccchHHHHHHHHH
Q psy7821           1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELY   80 (231)
Q Consensus         1 mgaYkYi~elwkkkqsd~~~~l~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~vv~R~~~s~~MgaYKYV~elw   80 (231)
                      ||||+||+|+|++||||+|+||+++|||||||+|+|||||+||||||||+|||||||||||+|++|              
T Consensus         1 Mg~Y~yi~e~wkkk~s~~~~~l~r~R~~e~Rq~~ai~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrV--------------   66 (194)
T 3j21_M            1 MGMYKYIREAWKSPKKSYVGELLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYVIVRVRV--------------   66 (194)
T ss_dssp             CCHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHSCSEEEESSCSSHHHHHHHHCCCSTTEEEEEEEE--------------
T ss_pred             CcHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCceeecCCCCChhHHHhcCccccCceEEEEEEE--------------
Confidence            999999999999999999999999999999999999999999999999999999999999999999              


Q ss_pred             hhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccc-cccccceeEEEEEEEeecCCCCCCCCCcchhhhhhcc
Q psy7821          81 RKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGY-RAKQVTLFSVQRYDVEEGNVQYPRVPTMNVSAEDVVT  159 (231)
Q Consensus        81 rkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGy-KaKqG~~~vi~Rv~vrRggrK~p~kp~~q~iaeerln  159 (231)
                      +                   .++  .+.++|....|++++|+ ++|..  .+++.|+|||+|+++||   |.     -||
T Consensus        67 r-------------------rGg--rkr~~pkg~~kPk~~Gv~~lk~~--kslq~iAEERagrk~~n---Lr-----VLN  115 (194)
T 3j21_M           67 R-------------------KGG--RKRPRWKGGRKPSKMGQVKYSPK--KSLQWIAEEKAARKFPN---LE-----VLN  115 (194)
T ss_dssp             E-------------------SSC--CCCCCCSSCCCTTTTCCSSCCCS--SCHHHHHHHHHHHHSTT---SE-----EEE
T ss_pred             e-------------------eCC--CCCCCcCCCCCcccccccccCcc--ccHHHHHHHHHhccCCC---ce-----eee
Confidence            3                   356  78999999999999998 78888  44444444444444432   11     199


Q ss_pred             c---------hhhhhh------hhhhcCCCCcccccCCcccccccCCccccccccCC-CCCCCcccccCCCccceeec
Q psy7821         160 S---------VFLKLL------LAIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKGHGFAQTIGGSRHAAWVR  221 (231)
Q Consensus       160 S---------k~~EvI------~~Ir~d~~~~wi~~~~hk~r~~rglTsag~k~rgl-~kg~~~~~~~g~s~~a~w~r  221 (231)
                      |         ||||||      |||++||+|||||+|+|||||||||||||+|+||| +|||+++|+. +|.+|+|++
T Consensus       116 SYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~Re~RGLTsAGkk~RGL~~kG~~~~k~r-ps~ra~~~~  192 (194)
T 3j21_M          116 SYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKGKGAEKVR-PSIRANEGK  192 (194)
T ss_dssp             EEEEEECSSEEEEEEEEECSSCHHHHHSTTTGGGGSGGGTTHHHHCCSHHHHHHHTTTCSSTTCSSSS-SCSTTSSSC
T ss_pred             ceeecCCCCceeEEEEEEcCCChhhccCCccccccccccccccccCccccccccccccccCCcccccC-ccccccccc
Confidence            9         999999      99999999999999999999999999999999999 9999999998 999999986

>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 4b6a_N 1s1i_L

Probab=100.00  E-value=8.9e-72  Score=478.54  Aligned_cols=148  Identities=55%  Similarity=1.005  Sum_probs=145.5

Q ss_pred             hHHHHHHHHHhhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccccccccceeEEEEEEEeecCCCCCC----
Q psy7821          71 GAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPR----  146 (231)
Q Consensus        71 gaYKYV~elwrkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGyKaKqG~~~vi~Rv~vrRggrK~p~----  146 (231)
                      |||+||+|+|++||||+|+||+++|||||||+++|+|+++|||||||++||||||||  |||+||+|+|||+|+|+    
T Consensus         1 g~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG--~Vv~RvrVRrGgrkrp~pkg~   78 (192)
T 3jyw_L            1 GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQG--FVIYRVRVRRGNRKRPVPKGA   78 (192)
T ss_dssp             CCCTTTHHHHHCTTSTTHHHHHHHHHHHHHHCCSEEEESSCSSHHHHHHHHCCCSTT--CEEEEEECCCSSSBCCCCCSC
T ss_pred             CHHHHHHHHHhccchHHHHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCe--eEEEEEEEeECCCCCCccCCC
Confidence            789999999999999999999999999999999999999999999999999999999  99999999999999998    


Q ss_pred             ---CC------------Ccchhhhhh----------ccc---------hhhhhh------hhhhcCCCCcccccCCcccc
Q psy7821         147 ---VP------------TMNVSAEDV----------VTS---------VFLKLL------LAIRRDPKVNWICKPVHKHR  186 (231)
Q Consensus       147 ---kp------------~~q~iaeer----------lnS---------k~~EvI------~~Ir~d~~~~wi~~~~hk~r  186 (231)
                         ||            |||+|||||          |||         ||||||      |||++||+|||||+|+||||
T Consensus        79 ~~gkPk~~Gvn~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp~~nWI~~~~hk~R  158 (192)
T 3jyw_L           79 TYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHR  158 (192)
T ss_dssp             SCSSCSSCCSBCCCCSSCHHHHHHHHHHTTSSSSEEEEEEEEEECSSCEEEEEEEECSSCSSTTTSSTTTGGGSGGGSST
T ss_pred             cccCcccccccccCccccHHHHHHHHHhccCCCcEEeeeeeecCCCCcceEEEEEecCCchhhccCCccccccCchhccc
Confidence               66            899999999          999         999999      99999999999999999999


Q ss_pred             cccCCccccccccCCCCCCCcccccCCCccceeec
Q psy7821         187 EMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVR  221 (231)
Q Consensus       187 ~~rglTsag~k~rgl~kg~~~~~~~g~s~~a~w~r  221 (231)
                      |||||||||+|+|||+|||+++||+ ||.+|+|++
T Consensus       159 e~RGLTsAGkk~RGL~kG~~~~k~~-~s~ra~w~r  192 (192)
T 3jyw_L          159 EARGLTATGKKSRGINKGHKFNNTK-AGRRKTWKR  192 (192)
T ss_dssp             TTTTCSTTGGGGTCCCCSSTTSSSS-SCHHHHTCC
T ss_pred             cccCCccccccccccCCCcCcccCC-CcccccccC
Confidence            9999999999999999999999999 999999986

>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2

Probab=100.00  E-value=1.5e-69  Score=465.01  Aligned_cols=149  Identities=30%  Similarity=0.553  Sum_probs=145.0

Q ss_pred             cchHHHHHHHHHhhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccccccccceeEEEEEEEeecCCCCCC--
Q psy7821          69 IMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPR--  146 (231)
Q Consensus        69 ~MgaYKYV~elwrkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGyKaKqG~~~vi~Rv~vrRggrK~p~--  146 (231)
                      .||||+||+|||++||||+|+||+++|||||||+++|+|++||||||||++||||||||  |||+||+|+|||+|+|+  
T Consensus         1 ~mgaY~Yi~e~wkkkqsd~~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG--~vv~RvrVRrGgrkrp~pk   78 (194)
T 1ffk_I            1 MKSMYAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKG--IIVVRVRIRRGGRRATRPN   78 (194)
T ss_pred             CccHHHHHHHHHhCcchHHHHHHHHHHHHHHhCCCceEEcCCCCchhHHHhcCCccCCe--EEEEEEEeccCCCCCCCcC
Confidence            39999999999999999999999999999999999999999999999999999999999  99999999999999999  


Q ss_pred             ---CC------------Ccchhhhhh----------ccc---------hhhhhh------hhhhcCCCCcccccCCcccc
Q psy7821         147 ---VP------------TMNVSAEDV----------VTS---------VFLKLL------LAIRRDPKVNWICKPVHKHR  186 (231)
Q Consensus       147 ---kp------------~~q~iaeer----------lnS---------k~~EvI------~~Ir~d~~~~wi~~~~hk~r  186 (231)
                         ||            |||+|||||          |||         ||||||      |||++||+|||||+  ||||
T Consensus        79 g~~kPk~~Gvn~lk~~rslq~iAEERagrk~~nLrVLNSYWV~qD~~yK~yEVILVDp~H~aIr~Dp~~nWI~~--hk~R  156 (194)
T 1ffk_I           79 KGRKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSR--TRGR  156 (194)
T ss_pred             CCCCccccCccccCccccHHHHHHHHHhccCCCceeeeeEEeccCCceeEEEEEEEcCCcHhhhcCcccccccc--cccc
Confidence               66            899999999          999         999999      99999999999999  9999


Q ss_pred             cccCCccccccccCC-CCCCCcccccCCCccceeecc
Q psy7821         187 EMRGLTSISKKSRGL-GKGHGFAQTIGGSRHAAWVRR  222 (231)
Q Consensus       187 ~~rglTsag~k~rgl-~kg~~~~~~~g~s~~a~w~r~  222 (231)
                      |||||||||+|+||| +|||+++||+ ||.+|+|++.
T Consensus       157 e~RGLTsaGkk~RGL~~kG~~~~k~~-~~~ra~w~r~  192 (194)
T 1ffk_I          157 VYRGLTSAGRKARGLRRKGRGAEKVR-PSLRANFRKK  192 (194)
T ss_pred             hhccccccccccCccCCCCCCcccCC-cchhhhhhhc
Confidence            999999999999999 9999999998 6699999974

>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2

Probab=100.00  E-value=2.5e-40  Score=284.19  Aligned_cols=109  Identities=30%  Similarity=0.497  Sum_probs=105.4

Q ss_pred             CchHHHHHHHHhccCchHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhccccccceEEeecCCCccchHHHHHHHHH
Q psy7821           1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELY   80 (231)
Q Consensus         1 mgaYkYi~elwkkkqsd~~~~l~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~vv~R~~~s~~MgaYKYV~elw   80 (231)
                      ||||+||+|+|++||||+|+||+++|||||||+|+||||++||||||||+|||||||||||+|++|              
T Consensus         2 mgaY~Yi~e~wkkkqsd~~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrV--------------   67 (194)
T 1ffk_I            2 KSMYAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRI--------------   67 (194)
T ss_pred             ccHHHHHHHHHhCcchHHHHHHHHHHHHHHhCCCceEEcCCCCchhHHHhcCCccCCeEEEEEEEe--------------
Confidence            899999999999999999999999999999999999999999999999999999999999999999              


Q ss_pred             hhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccc-cccccceeEEEEEEEeecCCCCCC
Q psy7821          81 RKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGY-RAKQVTLFSVQRYDVEEGNVQYPR  146 (231)
Q Consensus        81 rkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGy-KaKqG~~~vi~Rv~vrRggrK~p~  146 (231)
                      ++                   ++  .+.++|..+.|++++|+ ++|..  .+++.|+|||+|+++||
T Consensus        68 Rr-------------------Gg--rkrp~pkg~~kPk~~Gvn~lk~~--rslq~iAEERagrk~~n  111 (194)
T 1ffk_I           68 RR-------------------GG--RRATRPNKGRKSKKMMVNRRPRK--KNLQWIAEERANRKYPN  111 (194)
T ss_pred             cc-------------------CC--CCCCCcCCCCCccccCccccCcc--ccHHHHHHHHHhccCCC
Confidence            33                   56  78899999999999998 89999  99999999999999999

>4a17_L RPL15, ribosomal protein L15; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_L 4a1c_L 4a1e_L

Probab=100.00  E-value=1.2e-39  Score=281.83  Aligned_cols=109  Identities=39%  Similarity=0.694  Sum_probs=104.1

Q ss_pred             CchHHHHHHHHhccCchHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhccccccceEEeecCCCccchHHHHHHHHH
Q psy7821           1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELY   80 (231)
Q Consensus         1 mgaYkYi~elwkkkqsd~~~~l~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~vv~R~~~s~~MgaYKYV~elw   80 (231)
                      ||||+||+|+|++||||+|+||+++|||||||+|+||||++||||||||+|||||||||||+|++|              
T Consensus         1 mg~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrV--------------   66 (204)
T 4a17_L            1 MGAYKYLEELWRKKQSDLMSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDGYAIWRVRV--------------   66 (204)
T ss_dssp             -CHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHSCSEEEESSCSCHHHHHHTTCCSSTTEEEEEEEE--------------
T ss_pred             CcHHHHHHHHHhccccHHHHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCeeEEEEEEE--------------
Confidence            999999999999999999999999999999999999999999999999999999999999999999              


Q ss_pred             hhhcchhHHHHHhhhhhhhccCCceeeeCCCCCC--chhhhccc-cccccceeEEEEEEEeecCCCCCC
Q psy7821          81 RKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRP--DKARRMGY-RAKQVTLFSVQRYDVEEGNVQYPR  146 (231)
Q Consensus        81 rkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~--drArrLGy-KaKqG~~~vi~Rv~vrRggrK~p~  146 (231)
                      +                   .++  .+.++|..+  .|++++|+ ++|..  .+++.|+|||+|+++||
T Consensus        67 R-------------------rGg--rkrp~pkg~~~~kPk~~Gvn~lk~~--kslq~iAEERagrk~~n  112 (204)
T 4a17_L           67 R-------------------RGG--RKRPVSKGIVYGKPSSVGINQLKFA--RNLRSCAEERVGKRVPE  112 (204)
T ss_dssp             E-------------------CSC--CCCCCGGGCCCSCTTTCCCTTCCCS--SCHHHHHHHHHHHHSCS
T ss_pred             e-------------------eCC--CCCCccCCCcccCcccccccccCcc--hhHHHHHHHHHhccCCC
Confidence            3                   356  788999998  99999999 89999  99999999999999999

>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 4b6a_N 1s1i_L

Probab=100.00  E-value=7.3e-39  Score=274.88  Aligned_cols=108  Identities=44%  Similarity=0.728  Sum_probs=103.5

Q ss_pred             chHHHHHHHHhccCchHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhccccccceEEeecCCCccchHHHHHHHHHh
Q psy7821           2 GAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELYR   81 (231)
Q Consensus         2 gaYkYi~elwkkkqsd~~~~l~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~vv~R~~~s~~MgaYKYV~elwr   81 (231)
                      |||+||+|+|++||||+|+||+++|||||||+|+||||++||||||||+|||||||||||+|++|              +
T Consensus         1 g~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrV--------------R   66 (192)
T 3jyw_L            1 GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRV--------------R   66 (192)
T ss_dssp             CCCTTTHHHHHCTTSTTHHHHHHHHHHHHHHCCSEEEESSCSSHHHHHHHHCCCSTTCEEEEEEC--------------C
T ss_pred             CHHHHHHHHHhccchHHHHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCeeEEEEEEE--------------e
Confidence            79999999999999999999999999999999999999999999999999999999999999999              3


Q ss_pred             hhcchhHHHHHhhhhhhhccCCceeeeCCCCCCc--hhhhccc-cccccceeEEEEEEEeecCCCCCC
Q psy7821          82 KKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPD--KARRMGY-RAKQVTLFSVQRYDVEEGNVQYPR  146 (231)
Q Consensus        82 kkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~d--rArrLGy-KaKqG~~~vi~Rv~vrRggrK~p~  146 (231)
                                         .++  .+.++|..+.  |++++|+ ++|..  .+++.|+|||+|+++||
T Consensus        67 -------------------rGg--rkrp~pkg~~~gkPk~~Gvn~lk~~--kslq~iAEERagrk~~n  111 (192)
T 3jyw_L           67 -------------------RGN--RKRPVPKGATYGKPTNQGVNELKYQ--RSLRATAEERVGRRAAN  111 (192)
T ss_dssp             -------------------CSS--SBCCCCCSCSCSSCSSCCSBCCCCS--SCHHHHHHHHHHTTSSS
T ss_pred             -------------------ECC--CCCCccCCCcccCcccccccccCcc--ccHHHHHHHHHhccCCC
Confidence                               356  7889999985  9999999 89999  99999999999999999

>1vq8_M 50S ribosomal protein L15E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.2 PDB: 1vq4_M* 1vq5_M* 1vq6_M* 1vq7_M* 1s72_M* 1vqn_M* 2otj_M* 2otl_M* 2qex_M* 2qa4_M* 1vqo_M* 1vq9_M* 1vql_M* 1vqm_M* 1vqk_M* 1vqp_M* 1yij_M* 1yi2_M* 1yit_M* 1yj9_M* ...

Probab=99.97  E-value=1.7e-33  Score=241.88  Aligned_cols=127  Identities=28%  Similarity=0.371  Sum_probs=112.2

Q ss_pred             cchHHHHHHHHHhhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccccccccceeEEEEEEEeecCCCCCC--
Q psy7821          69 IMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPR--  146 (231)
Q Consensus        69 ~MgaYKYV~elwrkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGyKaKqG~~~vi~Rv~vrRggrK~p~--  146 (231)
                      .||||+||+|||++||||+|+||+++|||||||+++|+|++||||||||++||||||||  |||+||+|+|||+|+|+  
T Consensus         1 ~mgaY~Yi~e~wkkkqsd~~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG--~vv~RvrVRrGgrkrp~pk   78 (194)
T 1vq8_M            1 ARSAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQG--VIVARVSVRKGSARKRRHK   78 (194)
T ss_dssp             CCCSHHHHHHHTTSTTSHHHHHHHHHHHHHHTTSCSEEEESSCSSHHHHHHHTCCSSTT--EEEEEEEEECSSCCCCCCS
T ss_pred             CccHHHHHHHHHhCcchHHHHHHHHHHHHHHhCCCceEEcCCCCChhHHHhcCCccCCe--EEEEEEEeccCCCCCCCcC
Confidence            39999999999999999999999999999999999999999999999999999999999  99999999999999999  


Q ss_pred             ---CC------------Ccchhhhhhccc--hhhhhh--------------hhhhcCCCCcccccCCcccccccCCccc-
Q psy7821         147 ---VP------------TMNVSAEDVVTS--VFLKLL--------------LAIRRDPKVNWICKPVHKHREMRGLTSI-  194 (231)
Q Consensus       147 ---kp------------~~q~iaeerlnS--k~~EvI--------------~~Ir~d~~~~wi~~~~hk~r~~rglTsa-  194 (231)
                         ||            |||+|||||...  .-.||+              ..|--||.-+=|.++-    ..-.++.+ 
T Consensus        79 g~~kPk~~Gv~~lk~~rslq~iAEERagrk~~nLrVLNSYWV~eD~~yK~yEVILVDp~H~aIr~Dp----~~nWI~~~~  154 (194)
T 1vq8_M           79 AGRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDD----DLSWICADD  154 (194)
T ss_dssp             SCCCGGGTCCSSCCCSSCHHHHHHHHHHHHSTTCEEEEEEEEEEETTEEEEEEEEECTTCHHHHTCT----TTGGGGSGG
T ss_pred             CCCCccccCccccCccccHHHHHHHHHhccCCCceeeeeEEeccCCceeEEEEEEEcCCcHhhhcCc----ccccccCcc
Confidence               66            899999999776  456787              7788888888877643    45555554 


Q ss_pred             --cccccCC
Q psy7821         195 --SKKSRGL  201 (231)
Q Consensus       195 --g~k~rgl  201 (231)
                        ++-.|||
T Consensus       155 hk~Re~RGL  163 (194)
T 1vq8_M          155 QADRVFRGL  163 (194)
T ss_dssp             GTTGGGGTC
T ss_pred             cccchhccc
Confidence              5556787

>3j21_M 50S ribosomal protein L15E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.97  E-value=1.7e-32  Score=235.73  Aligned_cols=126  Identities=29%  Similarity=0.471  Sum_probs=109.9

Q ss_pred             chHHHHHHHHHhhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccccccccceeEEEEEEEeecCCCCCC---
Q psy7821          70 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPR---  146 (231)
Q Consensus        70 MgaYKYV~elwrkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGyKaKqG~~~vi~Rv~vrRggrK~p~---  146 (231)
                      ||||+||+|+|+++|||+|+||+++|||||||+++|+|+++|||||||++||||||||  |||+||+|++||+|+|+   
T Consensus         1 Mg~Y~yi~e~wkkk~s~~~~~l~r~R~~e~Rq~~ai~R~~rPTR~dkAR~LGYKAKQG--~Vv~RvrVrrGgrkr~~pkg   78 (194)
T 3j21_M            1 MGMYKYIREAWKSPKKSYVGELLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQG--YVIVRVRVRKGGRKRPRWKG   78 (194)
T ss_dssp             CCHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHSCSEEEESSCSSHHHHHHHHCCCSTT--EEEEEEEEESSCCCCCCCSS
T ss_pred             CcHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCceeecCCCCChhHHHhcCccccCc--eEEEEEEEeeCCCCCCCcCC
Confidence            9999999999999999999999999999999999999999999999999999999999  99999999999999999   


Q ss_pred             --CC------------Ccchhhhhhccch--hhhhh--------------hhhhcCCCCcccccCCcccccccCCccc--
Q psy7821         147 --VP------------TMNVSAEDVVTSV--FLKLL--------------LAIRRDPKVNWICKPVHKHREMRGLTSI--  194 (231)
Q Consensus       147 --kp------------~~q~iaeerlnSk--~~EvI--------------~~Ir~d~~~~wi~~~~hk~r~~rglTsa--  194 (231)
                        ||            |||+|||||.+-+  -.||+              ..|-=||.-+=|.++-    ..--+|.+  
T Consensus        79 ~~kPk~~Gv~~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVILVDp~H~aIr~Dp----~~nWI~~~~h  154 (194)
T 3j21_M           79 GRKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDP----KIAWIALKHH  154 (194)
T ss_dssp             CCCTTTTCCSSCCCSSCHHHHHHHHHHHHSTTSEEEEEEEEEECSSEEEEEEEEECSSCHHHHHST----TTGGGGSGGG
T ss_pred             CCCcccccccccCccccHHHHHHHHHhccCCCceeeeceeecCCCCceeEEEEEEcCCChhhccCC----cccccccccc
Confidence              66            8999999997774  47888              6677777666666533    44455544  


Q ss_pred             -cccccCC
Q psy7821         195 -SKKSRGL  201 (231)
Q Consensus       195 -g~k~rgl  201 (231)
                       ++-.|||
T Consensus       155 k~Re~RGL  162 (194)
T 3j21_M          155 KGRVFRGL  162 (194)
T ss_dssp             TTHHHHCC
T ss_pred             ccccccCc
Confidence             5556788

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	231
d1vqom1	194	d.12.1.2 (M:1-194) Ribosomal protein L15e {Archaeo	2e-40

>d1vqom1 d.12.1.2 (M:1-194) Ribosomal protein L15e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 194

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L15e
domain: Ribosomal protein L15e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  134 bits (340), Expect = 2e-40
 Identities = 49/227 (21%), Positives = 82/227 (36%), Gaps = 43/227 (18%)

Query: 2   GAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKL 61
            AY +I + +       +  +   R  ++R    + R  RPTR DKAR  GY+AKQG   
Sbjct: 3   SAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQG--- 59

Query: 62  PRSNTSSIMGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMG 121
                         I              + R+ V          R  R     +++R G
Sbjct: 60  -------------VI--------------VARVSV-----RKGSARKRRHKAGRRSKRQG 87

Query: 122 YRAKQVTLFSVQRYDVEEGNVQYPRVPTMNV--SAEDVVTSVFLKLLL-----AIRRDPK 174
              +      +QR   E  +  +P +  +N     +D        +L+     AI+ D  
Sbjct: 88  VT-RITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDDD 146

Query: 175 VNWICKPVHKHREMRGLTSISKKSRGLGKGHGFAQTIGGSRHAAWVR 221
           ++WIC      R  RGLT   +++RGL      ++    S  +   +
Sbjct: 147 LSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTRPSLRSNGGK 193

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	231
d1vqom1	194	Ribosomal protein L15e {Archaeon Haloarcula marism	100.0
d1ffki_	194	Ribosomal protein L15e {Archaeon Haloarcula marism	100.0
d1ffki_	194	Ribosomal protein L15e {Archaeon Haloarcula marism	100.0
d1vqom1	194	Ribosomal protein L15e {Archaeon Haloarcula marism	99.96

>d1vqom1 d.12.1.2 (M:1-194) Ribosomal protein L15e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L15e
domain: Ribosomal protein L15e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.3e-70  Score=469.36  Aligned_cols=175  Identities=31%  Similarity=0.510  Sum_probs=154.3

Q ss_pred             CchHHHHHHHHhccCchHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhccccccceEEeecCCCccchHHHHHHHHH
Q psy7821           1 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELY   80 (231)
Q Consensus         1 mgaYkYi~elwkkkqsd~~~~l~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~vv~R~~~s~~MgaYKYV~elw   80 (231)
                      .|||+||+|+|++||||+|+||+++|||||||+|+|||||+|||||+||+|||||||||||+|++|              
T Consensus         2 ~saY~Yv~e~wkk~~~~~~~~L~r~R~~e~R~~~~i~Ri~rPtR~DrAR~LGYKAKqG~vi~RvRV--------------   67 (194)
T d1vqom1           2 RSAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSV--------------   67 (194)
T ss_dssp             CCHHHHHHHHTTCTTSHHHHHHHHHHHHHHTTSCSEEEESSCTTHHHHHHTTCCSSTTEEEEEEEE--------------
T ss_pred             ccHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCceeecCCCCchhHHHhcCcccCCcEEEEEEEE--------------
Confidence            589999999999999999999999999999999999999999999999999999999999999999              


Q ss_pred             hhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccc-cccccceeEEEEEEEeecCCCCCCCCCcchhhhhhcc
Q psy7821          81 RKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGY-RAKQVTLFSVQRYDVEEGNVQYPRVPTMNVSAEDVVT  159 (231)
Q Consensus        81 rkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGy-KaKqG~~~vi~Rv~vrRggrK~p~kp~~q~iaeerln  159 (231)
                      ++                   ++  .+.++|....+++++|+ ++|..  .+++.|+|+|.|+++||   |.     -||
T Consensus        68 Rr-------------------Gg--~kr~~~kg~~kpK~~Gv~~lk~~--~~lq~iAEeRvgrk~~n---Lr-----VLN  116 (194)
T d1vqom1          68 RK-------------------GS--ARKRRHKAGRRSKRQGVTRITRR--KDIQRVAEERASRTFPN---LR-----VLN  116 (194)
T ss_dssp             EC-------------------SS--CCCCCCSSCCCGGGCCCSSCCCS--SCHHHHHHHHHHHHSTT---CE-----EEE
T ss_pred             ec-------------------CC--CCCCCCCCCCCCCcCcccccCcc--ccHHHHHHHHhcCcCCC---cE-----eec
Confidence            32                   55  78899999999999998 78888  33333333333333322   10     199


Q ss_pred             c---------hhhhhh------hhhhcCCCCcccccCCcccccccCCccccccccCC-CCCCCcccccCCCccceeec
Q psy7821         160 S---------VFLKLL------LAIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKGHGFAQTIGGSRHAAWVR  221 (231)
Q Consensus       160 S---------k~~EvI------~~Ir~d~~~~wi~~~~hk~r~~rglTsag~k~rgl-~kg~~~~~~~g~s~~a~w~r  221 (231)
                      |         ||||||      |+|++||+|||||+|+|||||||||||||+|+||| +|||+++|+. ||.+|+|++
T Consensus       117 SYwV~qDg~yk~yEVILvDp~h~aIr~D~~~nWI~~~~hk~R~~RGlTSAGkk~RGLr~kG~~~~k~r-pS~ran~~r  193 (194)
T d1vqom1         117 SYSVGQDGRQKWHEVILIDPNHPAIQNDDDLSWICADDQADRVFRGLTGAGRRNRGLSGKGKGSEKTR-PSLRSNGGK  193 (194)
T ss_dssp             EEEEEECSSEEEEEEEEECTTCHHHHTCTTTGGGGSGGGTTGGGGTCSHHHHHHTTCSCSSTTCTTTS-SCTTTTTTC
T ss_pred             ceEecCCCceeEEEEEEecCCCcccccCCccccccCcccccchhcCCcccccccCCCCCCCCCcCcCC-cccccccCC
Confidence            9         999999      99999999999999999999999999999999999 9999999997 999999975

>d1ffki_ d.12.1.2 (I:) Ribosomal protein L15e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L15e
domain: Ribosomal protein L15e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.5e-70  Score=469.54  Aligned_cols=175  Identities=32%  Similarity=0.571  Sum_probs=161.5

Q ss_pred             chHHHHHHHHhccCchHHHHHHHHHHHHHhcCCceeecCCCCChhhhhhhccccccceEEeecCCCccchHHHHHHHHHh
Q psy7821           2 GAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQGGKLPRSNTSSIMGAYRFISELYR   81 (231)
Q Consensus         2 gaYkYi~elwkkkqsd~~~~l~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~vv~R~~~s~~MgaYKYV~elwr   81 (231)
                      |||+||+|+|++||||+|+||+++|||||||+|+||||++|||||+||+|||||||||||+|++|              +
T Consensus         3 s~Y~yv~e~wkkkqsd~~~~l~r~R~~e~R~~~~i~Ri~rPTR~DrAR~LGYKAKQG~vi~RvRV--------------R   68 (194)
T d1ffki_           3 SMYAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRI--------------R   68 (194)
T ss_pred             cHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCceeecCCCCChhHHHhcCCccCceEEEEEEEe--------------c
Confidence            79999999999999999999999999999999999999999999999999999999999999999              3


Q ss_pred             hhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccc-cccccceeEEEEEEEeecCCCCCCCCCcchhhhhhccc
Q psy7821          82 KKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGY-RAKQVTLFSVQRYDVEEGNVQYPRVPTMNVSAEDVVTS  160 (231)
Q Consensus        82 kkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGy-KaKqG~~~vi~Rv~vrRggrK~p~kp~~q~iaeerlnS  160 (231)
                      +                   ++  .+.++|..+.+++++|+ ++|..  .+++.|+|+|+|+++||   |     |-|||
T Consensus        69 r-------------------Gg--rkr~~~~~grrpk~~gv~~lk~~--kslq~iAEERv~rk~~n---L-----rVLNS  117 (194)
T d1ffki_          69 R-------------------GG--RRATRPNKGRKSKKMMVNRRPRK--KNLQWIAEERANRKYPN---M-----EVLNS  117 (194)
T ss_pred             c-------------------CC--CcCCCCCCCccCCCCcccccCcc--ccHHHHHHHHhhccCCC---c-----Eeeee
Confidence            3                   55  67899999999999998 89999  88888888888888855   2     13888


Q ss_pred             ---------hhhhhh------hhhhcCCCCcccccCCcccccccCCccccccccCC-CCCCCcccccCCCccceeeccce
Q psy7821         161 ---------VFLKLL------LAIRRDPKVNWICKPVHKHREMRGLTSISKKSRGL-GKGHGFAQTIGGSRHAAWVRRNT  224 (231)
Q Consensus       161 ---------k~~EvI------~~Ir~d~~~~wi~~~~hk~r~~rglTsag~k~rgl-~kg~~~~~~~g~s~~a~w~r~n~  224 (231)
                               ||||||      |+|++||+|||||+  |||||||||||||+|+||| ++|++++++ +||.+|+|+++|.
T Consensus       118 YWV~qDg~~k~yEVIlVDp~h~aIr~D~~~nWI~~--~k~R~~RGlTSAGkk~RGL~~kg~~~~k~-rpS~ra~~rr~nk  194 (194)
T d1ffki_         118 YWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSR--TRGRVYRGLTSAGRKARGLRRKGRGAEKV-RPSLRANFRKKRR  194 (194)
T ss_pred             EEEcCCCceeEEEEEEecCCCcceeeCCCcCeeec--CCcchhcCCcccccccCCCCCCCCCcCcC-CcchhhhhhhccC
Confidence                     999999      99999999999997  9999999999999999999 677777777 6999999999983

>d1ffki_ d.12.1.2 (I:) Ribosomal protein L15e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L15e
domain: Ribosomal protein L15e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=1.8e-36  Score=258.35  Aligned_cols=132  Identities=25%  Similarity=0.349  Sum_probs=113.1

Q ss_pred             hHHHHHHHHHhhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccccccccceeEEEEEEEeecCCCCCC----
Q psy7821          71 GAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPR----  146 (231)
Q Consensus        71 gaYKYV~elwrkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGyKaKqG~~~vi~Rv~vrRggrK~p~----  146 (231)
                      ++|+||+|||++||||+|+||+++|||||||+++|+|++||||||+|++||||||||  |||+||+|+|||+++|.    
T Consensus         3 s~Y~yv~e~wkkkqsd~~~~l~r~R~~e~R~~~~i~Ri~rPTR~DrAR~LGYKAKQG--~vi~RvRVRrGgrkr~~~~~g   80 (194)
T d1ffki_           3 SMYAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKG--IIVVRVRIRRGGRRATRPNKG   80 (194)
T ss_pred             cHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCceeecCCCCChhHHHhcCCccCce--EEEEEEEeccCCCcCCCCCCC
Confidence            589999999999999999999999999999999999999999999999999999999  99999999999999877    


Q ss_pred             -CC------------Ccchhhhhhccc--hhhhhh--------------hhhhcCCCCcccccCCcccccccCCcccccc
Q psy7821         147 -VP------------TMNVSAEDVVTS--VFLKLL--------------LAIRRDPKVNWICKPVHKHREMRGLTSISKK  197 (231)
Q Consensus       147 -kp------------~~q~iaeerlnS--k~~EvI--------------~~Ir~d~~~~wi~~~~hk~r~~rglTsag~k  197 (231)
                       +|            |+|+|||||.+.  .-.||+              ..|--||.-+-|.++-.-.=-+-   .-|+-
T Consensus        81 rrpk~~gv~~lk~~kslq~iAEERv~rk~~nLrVLNSYWV~qDg~~k~yEVIlVDp~h~aIr~D~~~nWI~~---~k~R~  157 (194)
T d1ffki_          81 RKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVILVDRDHPAIKSDPQLSWVSR---TRGRV  157 (194)
T ss_pred             ccCCCCcccccCccccHHHHHHHHhhccCCCcEeeeeEEEcCCCceeEEEEEEecCCCcceeeCCCcCeeec---CCcch
Confidence             44            899999999887  457888              78888888888876543333332   35777


Q ss_pred             ccCC-CCCCCc
Q psy7821         198 SRGL-GKGHGF  207 (231)
Q Consensus       198 ~rgl-~kg~~~  207 (231)
                      .||| .-|.+.
T Consensus       158 ~RGlTSAGkk~  168 (194)
T d1ffki_         158 YRGLTSAGRKA  168 (194)
T ss_pred             hcCCccccccc
Confidence            8899 444443

>d1vqom1 d.12.1.2 (M:1-194) Ribosomal protein L15e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L15e
domain: Ribosomal protein L15e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.96  E-value=1.5e-30  Score=221.52  Aligned_cols=126  Identities=28%  Similarity=0.381  Sum_probs=111.1

Q ss_pred             chHHHHHHHHHhhhcchhHHHHHhhhhhhhccCCceeeeCCCCCCchhhhccccccccceeEEEEEEEeecCCCCCC---
Q psy7821          70 MGAYRFISELYRKKQSDVMRYIHRIRVWQYRQLTTLHRAPRPTRPDKARRMGYRAKQVTLFSVQRYDVEEGNVQYPR---  146 (231)
Q Consensus        70 MgaYKYV~elwrkkqsdv~~~l~r~r~w~yrq~~~v~R~~RPtr~drArrLGyKaKqG~~~vi~Rv~vrRggrK~p~---  146 (231)
                      .+||+||+|+|+++|||+|+||+++|||||||+++|+|+++|||||+|++||||||||  |||+||+|++||+++|+   
T Consensus         2 ~saY~Yv~e~wkk~~~~~~~~L~r~R~~e~R~~~~i~Ri~rPtR~DrAR~LGYKAKqG--~vi~RvRVRrGg~kr~~~kg   79 (194)
T d1vqom1           2 RSAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQG--VIVARVSVRKGSARKRRHKA   79 (194)
T ss_dssp             CCHHHHHHHHTTCTTSHHHHHHHHHHHHHHTTSCSEEEESSCTTHHHHHHTTCCSSTT--EEEEEEEEECSSCCCCCCSS
T ss_pred             ccHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCceeecCCCCchhHHHhcCcccCCc--EEEEEEEEecCCCCCCCCCC
Confidence            4699999999999999999999999999999999999999999999999999999999  99999999999999998   


Q ss_pred             --CC------------Ccchhhhhhccch--hhhhh--------------hhhhcCCCCcccccCCcccccccCCccc--
Q psy7821         147 --VP------------TMNVSAEDVVTSV--FLKLL--------------LAIRRDPKVNWICKPVHKHREMRGLTSI--  194 (231)
Q Consensus       147 --kp------------~~q~iaeerlnSk--~~EvI--------------~~Ir~d~~~~wi~~~~hk~r~~rglTsa--  194 (231)
                        +|            |+|+|||||.+-+  -.||+              ..|-=||.-+-|.++-    ++--++..  
T Consensus        80 ~~kpK~~Gv~~lk~~~~lq~iAEeRvgrk~~nLrVLNSYwV~qDg~yk~yEVILvDp~h~aIr~D~----~~nWI~~~~h  155 (194)
T d1vqom1          80 GRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVILIDPNHPAIQNDD----DLSWICADDQ  155 (194)
T ss_dssp             CCCGGGCCCSSCCCSSCHHHHHHHHHHHHSTTCEEEEEEEEEECSSEEEEEEEEECTTCHHHHTCT----TTGGGGSGGG
T ss_pred             CCCCCcCcccccCccccHHHHHHHHhcCcCCCcEeecceEecCCCceeEEEEEEecCCCcccccCC----ccccccCccc
Confidence              44            8999999997774  47888              7788888777777543    45556554  


Q ss_pred             -cccccCC
Q psy7821         195 -SKKSRGL  201 (231)
Q Consensus       195 -g~k~rgl  201 (231)
                       |+..|||
T Consensus       156 k~R~~RGl  163 (194)
T d1vqom1         156 ADRVFRGL  163 (194)
T ss_dssp             TTGGGGTC
T ss_pred             ccchhcCC
Confidence             6777888