Psyllid ID: psy7929

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MSTSYLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQEKALKNTTGGAGGGGSGTGSGSGSAGGAASKSKRGRKKAKDKAESATDAAGDDKSSNSKKKVAKKITGVGGVVGVLNAIVAADPDVAAPSHDVLDMPVDPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCPK
ccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccEEEEccccccccccccccccc
ccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccEcccEEEcccccccEEEEEEcEccccccccccEEccc
MSTSYLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKtkeygddkVQLAIQTYEMVDKYIRKLDTDLARFEQEIQEKALknttggaggggsgtgsgsgsaggaaskskrgrkKAKDKaesatdaagddkssnskKKVAKKITGVGGVVGVLNAIVaadpdvaapshdvldmpvdpneptycvcqqvsygemigcdnpdcpiewFHFACvslttkpkgkwycpk
MSTSYLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNmkhyskdkkketLAEIQKYfdktkeygddkVQLAIQTYEMVDKYIRKLDTDLARFEQEIQEKAlknttggaggggsgtgsgsgsaggaaskskrgrkkakdkaesatdaagddkssnskkkvakkitgvggvVGVLNAIVAADPDVAAPSHDVLDMPVDPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLttkpkgkwycpk
MSTSYLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQEKALKNTtggaggggsgtgsgsgsaggaaskskrgrkkakdkaESATdaagddkssnskkkvakkitgvggvvgvlnaivaadpdvaapSHDVLDMPVDPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCPK
********YLDSLDSLPIELQRNFTLMRELD***QDVMKTIDRVAEDYLDNM***********LAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARF*********************************************************************KITGVGGVVGVLNAIVAADPDVAAPSHDVLDMPVDPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYC**
MSTSYLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVA*************************FDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQEK**************************************************************************************************NEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCPK
MSTSYLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQEKALKNT********************************************************KKITGVGGVVGVLNAIVAADPDVAAPSHDVLDMPVDPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKP********
MSTSYLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQEK******************************************************************************************VLDMPVDPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCPK
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSTSYLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYxxxxxxxxxxxxxxxxxxxxxNTTGGAGGGGSGTGSGSGSAGGAASKSKRGRKKAKDKAESATDAAGDDKSSNSKKKVAKKITGVGGVVGVLNAIVAADPDVAAPSHDVLDMPVDPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCPK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query259 2.2.26 [Sep-21-2011]
Q5ZKY4249 Inhibitor of growth prote yes N/A 0.911 0.947 0.505 7e-68
Q8C0D7249 Inhibitor of growth prote yes N/A 0.911 0.947 0.505 1e-67
Q9UNL4249 Inhibitor of growth prote yes N/A 0.911 0.947 0.498 3e-67
Q9D8Y8240 Inhibitor of growth prote yes N/A 0.888 0.958 0.496 4e-67
Q8WYH8240 Inhibitor of growth prote no N/A 0.888 0.958 0.511 1e-65
Q3T095248 Inhibitor of growth prote no N/A 0.907 0.947 0.498 7e-64
Q9QXV3279 Inhibitor of growth prote no N/A 0.930 0.863 0.389 2e-48
Q9ESK4281 Inhibitor of growth prote no N/A 0.907 0.836 0.328 2e-38
Q9H160280 Inhibitor of growth prote no N/A 0.907 0.839 0.335 4e-38
Q9UK53422 Inhibitor of growth prote no N/A 0.810 0.497 0.362 6e-35
>sp|Q5ZKY4|ING4_CHICK Inhibitor of growth protein 4 OS=Gallus gallus GN=ING4 PE=2 SV=1 Back     alignment and function desciption
 Score =  257 bits (656), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 129/255 (50%), Positives = 168/255 (65%), Gaps = 19/255 (7%)

Query: 5   YLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETL 64
           YLE YLDS+++LP ELQRNF LMR+LD R +D+   ID++A +Y+ N +  S ++K   L
Sbjct: 6   YLEHYLDSIENLPFELQRNFQLMRDLDQRTEDLKSEIDKLATEYISNARTLSSEEKLGLL 65

Query: 65  AEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQEKALKNTTGGAGG 124
            +IQ+ + K KE+GDDKVQLA+QTYEMVDK+IR+LDTDLARFE +++EK ++++   +  
Sbjct: 66  KQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDTDLARFEADLKEKQIESSDYDSSS 125

Query: 125 GGSGTGSGSGSAGGAASKSKRGRKKAKDKAESATDAAGDDKSSNSKKKVAKKITGVGGVV 184
                   +     AA    R R K K+  E A       K++  K K+ +  T  G   
Sbjct: 126 SKGKKKGRAQKEKKAA----RARSKGKNSDEEAP------KTAQKKLKLVRTSTEYGMPS 175

Query: 185 GVLNAIVAADPDVAAPSHDVLDMPVDPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFAC 244
                +         PS DVLDMPVDPNEPTYC+C QVSYGEMIGCDNPDC IEWFHFAC
Sbjct: 176 VTFGNV--------HPS-DVLDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFAC 226

Query: 245 VSLTTKPKGKWYCPK 259
           V LTTKP+GKW+CP+
Sbjct: 227 VGLTTKPRGKWFCPR 241
Through chromatin acetylation it may function in DNA replication. May inhibit tumor progression by modulating the transcriptional output of signaling pathways which regulate cell proliferation.
Gallus gallus (taxid: 9031)
>sp|Q8C0D7|ING4_MOUSE Inhibitor of growth protein 4 OS=Mus musculus GN=Ing4 PE=1 SV=2 Back     alignment and function description
>sp|Q9UNL4|ING4_HUMAN Inhibitor of growth protein 4 OS=Homo sapiens GN=ING4 PE=1 SV=1 Back     alignment and function description
>sp|Q9D8Y8|ING5_MOUSE Inhibitor of growth protein 5 OS=Mus musculus GN=Ing5 PE=1 SV=1 Back     alignment and function description
>sp|Q8WYH8|ING5_HUMAN Inhibitor of growth protein 5 OS=Homo sapiens GN=ING5 PE=1 SV=1 Back     alignment and function description
>sp|Q3T095|ING4_BOVIN Inhibitor of growth protein 4 OS=Bos taurus GN=ING4 PE=2 SV=1 Back     alignment and function description
>sp|Q9QXV3|ING1_MOUSE Inhibitor of growth protein 1 OS=Mus musculus GN=Ing1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ESK4|ING2_MOUSE Inhibitor of growth protein 2 OS=Mus musculus GN=Ing2 PE=1 SV=3 Back     alignment and function description
>sp|Q9H160|ING2_HUMAN Inhibitor of growth protein 2 OS=Homo sapiens GN=ING2 PE=1 SV=2 Back     alignment and function description
>sp|Q9UK53|ING1_HUMAN Inhibitor of growth protein 1 OS=Homo sapiens GN=ING1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
350535360279 uncharacterized protein LOC100161116 [Ac 0.996 0.924 0.542 1e-78
291224580257 PREDICTED: inhibitor of growth family, m 0.949 0.957 0.557 8e-78
189237225269 PREDICTED: similar to AGAP009992-PA [Tri 0.965 0.929 0.558 2e-77
270007167278 hypothetical protein TcasGA2_TC013703 [T 0.965 0.899 0.550 6e-77
307171077260 Inhibitor of growth protein 4 [Camponotu 0.969 0.965 0.573 2e-76
328698023279 PREDICTED: inhibitor of growth protein 4 0.961 0.892 0.521 7e-76
328697570279 PREDICTED: inhibitor of growth protein 4 0.961 0.892 0.517 2e-75
242016091259 Inhibitor of growth protein, putative [P 0.918 0.918 0.556 5e-75
340729685252 PREDICTED: inhibitor of growth protein 5 0.915 0.940 0.587 5e-75
383859248255 PREDICTED: inhibitor of growth protein 5 0.930 0.945 0.584 2e-74
>gi|350535360|ref|NP_001233000.1| uncharacterized protein LOC100161116 [Acyrthosiphon pisum] gi|239789913|dbj|BAH71552.1| ACYPI002366 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 146/269 (54%), Positives = 183/269 (68%), Gaps = 11/269 (4%)

Query: 2   STSYLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKK 61
           S  YLE YLDSL++LP+ELQRNFTLMR+LDSRAQ++M+ ID++A+DY+ N+K Y+ +KK 
Sbjct: 3   SALYLEHYLDSLENLPVELQRNFTLMRDLDSRAQELMRNIDKLADDYMSNVKGYTVEKKN 62

Query: 62  ETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQEKAL---KNT 118
           ET+  IQ+ FDK KEYGDDKVQLAIQTYE+VDK+IRKLD+DLARFE EIQ+KA+   +N 
Sbjct: 63  ETMTSIQRQFDKAKEYGDDKVQLAIQTYELVDKHIRKLDSDLARFEAEIQDKAISATRNI 122

Query: 119 TGGAGGGGSGTGSGSGSAGGAASKSKRGRKKAKDKAESATDAAGDDKSSNSKKKVAKKIT 178
             G+   G            +AS  +    K   K +     A    ++ SK  +   +T
Sbjct: 123 EEGSQKRGRKKTKDKEVKKKSASSEEETVTKTSKKKQLKKVGAKSTSAAPSKTPLVSVVT 182

Query: 179 GVGGVVGVLNAIVAADPDV--------AAPSHDVLDMPVDPNEPTYCVCQQVSYGEMIGC 230
                   + ++ A    +         A S +VLDMPVDPNEPTYC+C QVSYGEMIGC
Sbjct: 183 NPTNPTNSVASVTAETSSLTGALVGAGVAHSAEVLDMPVDPNEPTYCLCNQVSYGEMIGC 242

Query: 231 DNPDCPIEWFHFACVSLTTKPKGKWYCPK 259
           DNPDCPIEWFHFACV LTTKPKGKW+CPK
Sbjct: 243 DNPDCPIEWFHFACVKLTTKPKGKWFCPK 271

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|291224580|ref|XP_002732281.1| PREDICTED: inhibitor of growth family, member 4-like isoform 1 [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|189237225|ref|XP_001810464.1| PREDICTED: similar to AGAP009992-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270007167|gb|EFA03615.1| hypothetical protein TcasGA2_TC013703 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|307171077|gb|EFN63120.1| Inhibitor of growth protein 4 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|328698023|ref|XP_001943164.2| PREDICTED: inhibitor of growth protein 4-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328697570|ref|XP_001948924.2| PREDICTED: inhibitor of growth protein 4-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|242016091|ref|XP_002428669.1| Inhibitor of growth protein, putative [Pediculus humanus corporis] gi|212513340|gb|EEB15931.1| Inhibitor of growth protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|340729685|ref|XP_003403127.1| PREDICTED: inhibitor of growth protein 5-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|383859248|ref|XP_003705107.1| PREDICTED: inhibitor of growth protein 5-like isoform 1 [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query259
ZFIN|ZDB-GENE-031016-1242 ing5a "inhibitor of growth fam 0.436 0.466 0.605 1.1e-64
UNIPROTKB|Q5ZJ84241 ING5 "Uncharacterized protein" 0.436 0.468 0.578 9.9e-64
FB|FBgn0032516285 CG9293 [Drosophila melanogaste 0.436 0.396 0.603 2e-63
UNIPROTKB|Q5ZKY4249 ING4 "Inhibitor of growth prot 0.440 0.457 0.561 2.6e-63
UNIPROTKB|Q8WYH8240 ING5 "Inhibitor of growth prot 0.436 0.470 0.578 4.2e-63
UNIPROTKB|E2RJ78240 ING5 "Uncharacterized protein" 0.436 0.470 0.578 5.4e-63
UNIPROTKB|F1MD09248 ING4 "Inhibitor of growth prot 0.440 0.459 0.552 6.9e-63
UNIPROTKB|E2RNT1249 ING4 "Uncharacterized protein" 0.440 0.457 0.552 6.9e-63
UNIPROTKB|Q9UNL4249 ING4 "Inhibitor of growth prot 0.440 0.457 0.552 6.9e-63
MGI|MGI:107307249 Ing4 "inhibitor of growth fami 0.440 0.457 0.552 6.9e-63
ZFIN|ZDB-GENE-031016-1 ing5a "inhibitor of growth family, member 5a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 352 (129.0 bits), Expect = 1.1e-64, Sum P(2) = 1.1e-64
 Identities = 69/114 (60%), Positives = 92/114 (80%)

Query:     1 MSTS-YLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDK 59
             M+T+ YLE YLDS+++LP ELQRNFTLMRELD+RA++    ID++AE+Y+ N+++   D+
Sbjct:     1 MATAIYLEHYLDSIENLPCELQRNFTLMRELDNRAEEKKCEIDKLAEEYIANVRNLVPDQ 60

Query:    60 KKETLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQEK 113
             + E L +IQ  F   KEY DDKVQLA+QTYEMVDK+IR+LD DLARFE E++EK
Sbjct:    61 RVELLQKIQNGFSICKEYSDDKVQLAMQTYEMVDKHIRRLDADLARFENELKEK 114
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
UNIPROTKB|Q5ZJ84 ING5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0032516 CG9293 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZKY4 ING4 "Inhibitor of growth protein 4" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q8WYH8 ING5 "Inhibitor of growth protein 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RJ78 ING5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MD09 ING4 "Inhibitor of growth protein 4" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RNT1 ING4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UNL4 ING4 "Inhibitor of growth protein 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:107307 Ing4 "inhibitor of growth family, member 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9D8Y8ING5_MOUSENo assigned EC number0.49610.88800.9583yesN/A
Q8WYH8ING5_HUMANNo assigned EC number0.51150.88800.9583noN/A
Q6CXN0YNG2_KLULANo assigned EC number0.27500.98450.8644yesN/A
O42871ING1_SCHPONo assigned EC number0.28350.98060.8975yesN/A
Q6C5V7YNG2_YARLINo assigned EC number0.26110.99220.9081yesN/A
Q9UNL4ING4_HUMANNo assigned EC number0.49800.91110.9477yesN/A
Q9LIQ6ING1_ARATHNo assigned EC number0.27920.82230.9102yesN/A
Q5ZKY4ING4_CHICKNo assigned EC number0.50580.91110.9477yesN/A
Q8C0D7ING4_MOUSENo assigned EC number0.50580.91110.9477yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
pfam12998104 pfam12998, ING, Inhibitor of growth proteins N-ter 7e-41
COG5034271 COG5034, TNG2, Chromatin remodeling protein, conta 4e-37
pfam0062851 pfam00628, PHD, PHD-finger 9e-10
smart0024947 smart00249, PHD, PHD zinc finger 9e-08
>gnl|CDD|221887 pfam12998, ING, Inhibitor of growth proteins N-terminal histone-binding Back     alignment and domain information 
 Score =  136 bits (344), Expect = 7e-41
 Identities = 48/104 (46%), Positives = 71/104 (68%), Gaps = 1/104 (0%)

Query: 4   SYLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMK-HYSKDKKKE 62
            YLE YLD L++LP+ELQRNFT +RE+D++ Q ++K +D   + ++     + S  K++E
Sbjct: 1   LYLEDYLDDLENLPLELQRNFTEIREIDAQVQKIIKELDEQIQKFIKENGSNLSNPKEEE 60

Query: 63  TLAEIQKYFDKTKEYGDDKVQLAIQTYEMVDKYIRKLDTDLARF 106
            L  IQ+   K +E  D+KVQLA Q YE+VDK+IR+LD DL + 
Sbjct: 61  LLKRIQEELIKAQELQDEKVQLANQAYELVDKHIRRLDKDLEKL 104

Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterized C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. Length = 104
>gnl|CDD|227367 COG5034, TNG2, Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 259
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 100.0
KOG1973|consensus274 100.0
PF12998105 ING: Inhibitor of growth proteins N-terminal histo 99.95
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.59
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 98.47
KOG1512|consensus381 97.67
KOG0954|consensus 893 97.43
KOG4299|consensus 613 97.25
KOG4323|consensus 464 97.17
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 96.98
KOG0825|consensus 1134 96.92
KOG1244|consensus336 96.47
KOG0955|consensus 1051 96.3
COG5141 669 PHD zinc finger-containing protein [General functi 95.75
KOG0383|consensus 696 95.23
KOG1245|consensus 1404 94.9
KOG1632|consensus 345 94.83
KOG0957|consensus 707 91.92
KOG0957|consensus 707 91.34
KOG2752|consensus 345 89.47
PF1377190 zf-HC5HC2H: PHD-like zinc-binding domain 88.29
COG1382119 GimC Prefoldin, chaperonin cofactor [Posttranslati 87.59
KOG1632|consensus345 86.74
PF13832110 zf-HC5HC2H_2: PHD-zinc-finger like domain 85.24
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 82.51
PF1334178 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85 80.25
TIGR02338110 gimC_beta prefoldin, beta subunit, archaeal. Chape 80.21
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=8.8e-40  Score=281.10  Aligned_cols=252  Identities=27%  Similarity=0.428  Sum_probs=154.0

Q ss_pred             hhhHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCCChhHHH-HHHHHHHHHHHHHHHhhH
Q psy7929           3 TSYLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRV--AEDYLDNMKHYSKDKKK-ETLAEIQKYFDKTKEYGD   79 (259)
Q Consensus         3 ~~yLedfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~-~~~~~I~~~~~~~~~l~d   79 (259)
                      ...|+||+|.|+|+|.|+.+.|++|.++|.++.++++.+.+.  +.+|+.+.++++++++. .+.+.|++.|..+..++.
T Consensus         4 ~~~Lnd~~d~l~n~P~et~~~~t~l~~iD~k~~d~~k~l~q~~si~k~~~~~~~~t~~e~ed~l~k~i~Ell~~a~~~~~   83 (271)
T COG5034           4 FPGLNDITDHLANVPSETDIRFTELSEIDAKVCDIIKNLRQMISILKKIIDLDSQTYEEVEDGLLKEIRELLLKAIYIQK   83 (271)
T ss_pred             hHHHHHHHHHHHhCChhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccCccccchhHHHHHHHHHHHHHHHHHH
Confidence            457999999999999999999999999999999999998655  56788888888888887 455789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCC---CCCCCCC-CCCCCCCCCCCCCCcccccccccc--c
Q psy7929          80 DKVQLAIQTYEMVDKYIRKLDTDLARFEQEIQE-KALKNTTG---GAGGGGS-GTGSGSGSAGGAASKSKRGRKKAK--D  152 (259)
Q Consensus        80 EKv~LA~~a~dlVd~hirrLD~dl~~~e~el~~-~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~k~~r~~~~--~  152 (259)
                      +|..||+.+..++.||+++||..+++...+... .+++....   ...++.+ ..+.+++....+...  -|++++.  .
T Consensus        84 ~~~~l~d~~~~l~~Rh~~~~d~~~a~~~h~~~~~~ie~~~~~~s~~~~~~~ss~a~~ss~~~~saass--qgs~~t~~~~  161 (271)
T COG5034          84 EKSDLADRAEKLLRRHRKLLDDRIAKRPHEKVAARIENCHDAVSRLERNSYSSAARRSSGEHRSAASS--QGSRHTKLKK  161 (271)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHhhhhhhhhhhhhhhhhhhhhhhccccchhhhcccccccccccc--ccccCchhHH
Confidence            999999999999999999999998777654433 23222100   0010101 000000000000000  0000000  0


Q ss_pred             hhhccccCCCCCCCCchhhhhhccccCCCCccccccccccCCCCC-CCCCCCCCCCCCCCCCCccceeCCCCCCCceeec
Q psy7929         153 KAESATDAAGDDKSSNSKKKVAKKITGVGGVVGVLNAIVAADPDV-AAPSHDVLDMPVDPNEPTYCVCQQVSYGEMIGCD  231 (259)
Q Consensus       153 ~~~~~~~~~~~~~~~~~kk~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~C~C~~~~~g~mi~Cd  231 (259)
                      ++........++ ...+++.+..  +...++.+....+......+ .+....+.......++++||+|++|+||+||+||
T Consensus       162 R~n~~~~k~~~p-~~~S~r~~~~--t~~sp~v~~t~t~v~e~~~~~s~~~~~vss~d~se~e~lYCfCqqvSyGqMVaCD  238 (271)
T COG5034         162 RKNIHNLKRRSP-ELSSKREVSF--TLESPSVPDTATRVKEGNNGGSTKSRGVSSEDNSEGEELYCFCQQVSYGQMVACD  238 (271)
T ss_pred             HHhhcccccCCc-chhhhccCCc--cCCCCCcccchhhhhcccCCCCccccCcCccccccCceeEEEecccccccceecC
Confidence            000000000000 0000111110  00000000000000000000 0011111111234678999999999999999999


Q ss_pred             CCCCCCcceeeccCcCCcCCCcccccCC
Q psy7929         232 NPDCPIEWFHFACVSLTTKPKGKWYCPK  259 (259)
Q Consensus       232 ~~~c~~~wfH~~Cv~~~~~~~~~w~C~~  259 (259)
                      |.+|++||||+.||||.++|+|+||||.
T Consensus       239 n~nCkrEWFH~~CVGLk~pPKG~WYC~e  266 (271)
T COG5034         239 NANCKREWFHLECVGLKEPPKGKWYCPE  266 (271)
T ss_pred             CCCCchhheeccccccCCCCCCcEeCHH
Confidence            9999999999999999999999999983

>KOG1973|consensus Back     alignment and domain information
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG1512|consensus Back     alignment and domain information
>KOG0954|consensus Back     alignment and domain information
>KOG4299|consensus Back     alignment and domain information
>KOG4323|consensus Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG0825|consensus Back     alignment and domain information
>KOG1244|consensus Back     alignment and domain information
>KOG0955|consensus Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG0383|consensus Back     alignment and domain information
>KOG1245|consensus Back     alignment and domain information
>KOG1632|consensus Back     alignment and domain information
>KOG0957|consensus Back     alignment and domain information
>KOG0957|consensus Back     alignment and domain information
>KOG2752|consensus Back     alignment and domain information
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain Back     alignment and domain information
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1632|consensus Back     alignment and domain information
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A Back     alignment and domain information
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query259
1wen_A71 Solution Structure Of Phd Domain In Ing1-Like Prote 5e-29
1weu_A91 Solution Structure Of Phd Domain In Ing1-Like Prote 3e-28
2k1j_A63 Plan Homeodomain Finger Of Tumour Supressor Ing4 Le 9e-27
2vnf_A60 Molecular Basis Of Histone H3k4me3 Recognition By I 1e-26
2m1r_A63 Phd Domain Of Ing4 N214d Mutant Length = 63 4e-26
4afl_A104 The Crystal Structure Of The Ing4 Dimerization Doma 5e-26
1wes_A71 Solution Structure Of Phd Domain In Inhibitor Of Gr 7e-26
2qic_A62 Crystal Structure Of The Ing1 Phd Finger In Complex 1e-25
3c6w_A59 Crystal Structure Of The Ing5 Phd Finger In Complex 9e-25
2pnx_A55 The Phd Finger Of Ing4 In Complex With An H3k4me3 H 3e-24
2g6q_A62 Crystal Structure Of Ing2 Phd Domain In Complex Wit 2e-23
1x4i_A70 Solution Structure Of Phd Domain In Inhibitor Of Gr 6e-21
2jmi_A90 Nmr Solution Structure Of Phd Finger Fragment Of Ye 1e-15
>pdb|1WEN|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein Bac25079 Length = 71 Back     alignment and structure 
Iteration: 1

 Score =  124 bits (311), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/54 (87%), Positives = 51/54 (94%)
Query: 206 DMPVDPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCPK 259
           DMPVDPNEPTYC+C QVSYGEMIGCDNPDC IEWFHFACV LTTKP+GKW+CP+
Sbjct: 8   DMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPR 61
>pdb|1WEU|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein Bac25009 Length = 91 Back     alignment and structure
>pdb|2K1J|A Chain A, Plan Homeodomain Finger Of Tumour Supressor Ing4 Length = 63 Back     alignment and structure
>pdb|2VNF|A Chain A, Molecular Basis Of Histone H3k4me3 Recognition By Ing4 Length = 60 Back     alignment and structure
>pdb|2M1R|A Chain A, Phd Domain Of Ing4 N214d Mutant Length = 63 Back     alignment and structure
>pdb|4AFL|A Chain A, The Crystal Structure Of The Ing4 Dimerization Domain Reveals The Functional Organization Of The Ing Family Of Chromatin Binding Proteins. Length = 104 Back     alignment and structure
>pdb|1WES|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth Family, Member 1-Like Length = 71 Back     alignment and structure
>pdb|2QIC|A Chain A, Crystal Structure Of The Ing1 Phd Finger In Complex With A Histone H3k4me3 Peptide Length = 62 Back     alignment and structure
>pdb|3C6W|A Chain A, Crystal Structure Of The Ing5 Phd Finger In Complex With H3k4me3 Peptide Length = 59 Back     alignment and structure
>pdb|2PNX|A Chain A, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone Peptide Length = 55 Back     alignment and structure
>pdb|2G6Q|A Chain A, Crystal Structure Of Ing2 Phd Domain In Complex With H3k4me3 Peptide Length = 62 Back     alignment and structure
>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth Protein 3 (Ing3) Length = 70 Back     alignment and structure
>pdb|2JMI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Yeast Yng1 Protein In Free State Length = 90 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query259
4afl_A104 P29ING4, inhibitor of growth protein 4; cell cycle 99.97
1weu_A91 Inhibitor of growth family, member 4; structural g 99.85
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 99.85
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 99.84
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 99.82
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 99.81
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 99.81
1x4i_A70 Inhibitor of growth protein 3; structural genomics 99.8
1wew_A78 DNA-binding family protein; structural genomics, P 99.64
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 99.52
3o70_A68 PHD finger protein 13; PHF13, structural genomics 99.43
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 99.41
1we9_A64 PHD finger family protein; structural genomics, PH 99.35
1wem_A76 Death associated transcription factor 1; structura 99.34
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 99.34
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 99.33
1wee_A72 PHD finger family protein; structural genomics, PH 99.32
2k16_A75 Transcription initiation factor TFIID subunit 3; p 99.31
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 99.22
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 99.13
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 99.09
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 99.06
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 99.05
3kv5_D 488 JMJC domain-containing histone demethylation prote 99.02
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 98.99
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 98.98
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 98.98
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 98.96
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 98.95
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 98.92
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 98.88
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 98.85
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 98.84
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 98.74
2yt5_A66 Metal-response element-binding transcription facto 98.65
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 98.64
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 98.62
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 98.56
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 98.42
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 98.34
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 98.29
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 98.29
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 98.23
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 98.16
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 98.05
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 97.69
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 97.62
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 97.57
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 97.5
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 97.49
4bbq_A117 Lysine-specific demethylase 2A; oxidoreductase, ub 95.9
2xzr_A114 Immunoglobulin-binding protein EIBD; cell adhesion 95.67
3a1b_A159 DNA (cytosine-5)-methyltransferase 3A, histone H3; 93.77
2pv0_B 386 DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, 93.34
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 91.89
2lq6_A87 Bromodomain-containing protein 1; PHD finger, meta 89.87
1m1j_C 409 Fibrinogen gamma chain; coiled coils, disulfide ri 87.11
1wil_A89 KIAA1045 protein; ring finger domain, structural g 86.45
2qyw_A102 Vesicle transport through interaction with T-SNAR 81.39
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 80.12
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens} Back     alignment and structure
Probab=99.97  E-value=7e-31  Score=202.16  Aligned_cols=103  Identities=56%  Similarity=0.911  Sum_probs=100.1

Q ss_pred             hhhhHHHHHHHhhcccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHhhHHH
Q psy7929           2 STSYLEQYLDSLDSLPIELQRNFTLMRELDSRAQDVMKTIDRVAEDYLDNMKHYSKDKKKETLAEIQKYFDKTKEYGDDK   81 (259)
Q Consensus         2 ~~~yLedfld~ie~LP~El~r~l~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~dEK   81 (259)
                      +++|||+|+++|+|||.||+|+|++||+||.+++++++++++.+++|+++.++++++++...+.+|++.|.++++++|||
T Consensus         2 ~~~yledyld~ie~LP~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~l~~I~~~~~~~~~l~dEK   81 (104)
T 4afl_A            2 AGMYLEHYLDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLALLKQIQEAYGKCKEFGDDK   81 (104)
T ss_dssp             CCHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy7929          82 VQLAIQTYEMVDKYIRKLDTDLA  104 (259)
Q Consensus        82 v~LA~~a~dlVd~hirrLD~dl~  104 (259)
                      |+||++||++||+|++|||.||+
T Consensus        82 v~lA~~~~dlvdkhirrLD~dla  104 (104)
T 4afl_A           82 VQLAMQTYEMVDKHIRRLDTDLA  104 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcC
Confidence            99999999999999999999874
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} Back     alignment and structure
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd} Back     alignment and structure
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Back     alignment and structure
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C Back     alignment and structure
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 Back     alignment and structure
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 259
d1wesa_71 g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I 2e-24
d2pnxa151 g.50.1.2 (A:195-245) Inhibitor of growth protein 4 8e-24
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 3e-17
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 1e-12
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 9e-11
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 2e-10
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 8e-09
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 2e-08
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 2e-06
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 6e-06
d1dd5a_184 d.67.3.1 (A:) Ribosome recycling factor, RRF {Ther 0.003
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.8 bits (225), Expect = 2e-24
 Identities = 44/54 (81%), Positives = 48/54 (88%)

Query: 206 DMPVDPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCPK 259
           +  +DPNEPTYC+C QVSYGEMIGCDN  CPIEWFHF+CVSLT KPKGKWYCPK
Sbjct: 8   EFAIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPK 61
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]} Length = 184 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query259
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 99.71
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 99.7
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 99.35
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 99.18
d1wema_76 Death associated transcription factor 1, Datf1 (DI 99.02
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 99.0
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 98.85
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 98.83
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 98.74
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.66
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 98.6
d2v89a174 V(D)J recombination-activating protein 2, Rag2 {Mo 88.56
d1gs9a_144 Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 86.22
d1a7ia128 Cysteine-rich (intestinal) protein, CRP, CRIP {Jap 81.86
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD Inhibitor of growth protein 2, Ing2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=3.5e-18  Score=120.37  Aligned_cols=54  Identities=81%  Similarity=1.751  Sum_probs=49.9

Q ss_pred             CCCCCCCCCccceeCCCCCCCceeecCCCCCCcceeeccCcCCcCCCcccccCC
Q psy7929         206 DMPVDPNEPTYCVCQQVSYGEMIGCDNPDCPIEWFHFACVSLTTKPKGKWYCPK  259 (259)
Q Consensus       206 ~~~~~~~~~~~C~C~~~~~g~mi~Cd~~~c~~~wfH~~Cv~~~~~~~~~w~C~~  259 (259)
                      +.+.|+++..||+|+++.+++||.|+++.|+..|||+.||||+..|.++||||.
T Consensus         8 ~~~~d~~e~~~CiC~~~~~~~~i~c~~~~C~~~wfH~~Cvgl~~~p~~~w~C~~   61 (71)
T d1wesa_           8 EFAIDPNEPTYCLCNQVSYGEMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPK   61 (71)
T ss_dssp             CSCCCSSSCCCSTTCCCCCSSEECCSCTTCSCCCEETTTTTCSSCCSSCCCCTT
T ss_pred             CCCcCCCCCCEEEeCCCCCCCEEEEECCCCCCcCccCccCCCCcCCCCcEECcC
Confidence            667899999999999998899999998889889999999999999999999985
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2v89a1 g.50.1.2 (A:1414-1487) V(D)J recombination-activating protein 2, Rag2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]} Back     information, alignment and structure
>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]} Back     information, alignment and structure