Psyllid ID: psy799

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MDPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQYRMPYLDNITYFIQVLLKVVPPDQTDPDNSDTESNGVSLSVKHSSDDVQANGVEKHALLEVEVRTPIVINGAVKDSN
Secondary Structure (PSIPRED)
cccHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHEEEEccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHccccEEEEHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcHEEEHHccccccHHHHHHHHHHccccccHEEEEHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHcccccccccccccccccccHcHcHcccccccccccHHHHHHHHccccEEEEccEEccc
Coil and Loop (DISEMBL)
mdpvfemiASPAVAVAFServlgpfqfiVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVhvkrltpapavlfqvplVIPIFVLIMSIVLsltpivtkpapqFLIAVAFIVLGILVYIPFVyyqyrmpyldNITYFIQVLLKvvppdqtdpdnsdtesngvslsvkhssddvqangvekhALLEVEVrtpivingavkdsn
Flexible Loop (DISEMBL)
MDPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQYRMPYLDNITYFIQVLLKVVPPDQTDPDNSDTESNGVSLSVKHSSDDVQANGVEKhallevevrtpivingavkdsn
Low Complexity Region (SEG)
MDPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQYRMPYLDNITYFIQVLLKVVPPDQTDPDNSDTESNGVSLSVKHSSDDVQANGVEKHALLEVEVRTPIVINGAVKDSN
Disordered region (IsUnstruct)
****FEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQYRMPYLDNITYFIQVLLKVV***********************************HALLEVEVRTPIVING******
Disordered Region (DISOPRED)
MDPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQYRMPYLDNITYFIQVLLKVVPP****************************************VRTPIVI*GA*****
Disordered Region (DISEMBL)
MDPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQYRMPYLDNITYFIQVLLKVVPPD****************SVKHSSDDVQANGVEKHALLEVEVRTPIVINGAVKDSN
Disordered Region (DISPRO)
*D***EMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQYRMPYLDNITYFIQVLLKVVPPD*****************************VEKHALLEVEVRTPIVINGAVKD**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQYRMPYLDNITYFIQVLLKVVPPDQTDPDNSDTESNGVSLSVKHSSDDVQANGVEKHALLEVEVRTPIVINGAVKDSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	209	2.2.26 [Sep-21-2011]
P82251	487	B(0,+)-type amino acid tr	yes	N/A	0.736	0.316	0.352	6e-26
Q9QXA6	487	B(0,+)-type amino acid tr	yes	N/A	0.755	0.324	0.363	2e-25
Q9N1R6	487	B(0,+)-type amino acid tr	yes	N/A	0.755	0.324	0.349	3e-24
P82252	487	B(0,+)-type amino acid tr	yes	N/A	0.755	0.324	0.339	6e-22
Q9WTR6	502	Cystine/glutamate transpo	no	N/A	0.712	0.296	0.3	1e-13
Q9WVR6	533	Large neutral amino acids	no	N/A	0.755	0.296	0.267	1e-13
Q9QXW9	531	Large neutral amino acids	no	N/A	0.363	0.143	0.473	3e-13
Q9N1Q4	535	Large neutral amino acids	no	N/A	0.363	0.142	0.473	3e-13
Q5RAG7	501	Cystine/glutamate transpo	no	N/A	0.392	0.163	0.475	3e-13
Q9UPY5	501	Cystine/glutamate transpo	no	N/A	0.392	0.163	0.475	3e-13

>sp|P82251|BAT1_HUMAN B(0,+)-type amino acid transporter 1 OS=Homo sapiens GN=SLC7A9 PE=1 SV=1

 Score =  117 bits (293), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 73/207 (35%), Positives = 108/207 (52%), Gaps = 53/207 (25%)

Query: 6   EMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAF 65
           E++ S AVAV F +RVL P  +IVPL V  +T G A    F   RL Y AGREGHML+  
Sbjct: 282 ELLQSQAVAVTFGDRVLYPASWIVPLFVAFSTIGAANGTCFTAGRLIYVAGREGHMLKVL 341

Query: 66  SFVHVKRLTPAPAVLF-------------------------------------------- 81
           S++ V+RLTPAPA++F                                            
Sbjct: 342 SYISVRRLTPAPAIIFYGIIATIYIIPGDINSLVNYFSFAAWLFYGLTILGLIVMRFTRK 401

Query: 82  ------QVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQYRM 135
                 +VP+VIP+ + ++S+ L L PI++KP  ++L  V FI+ G+L Y  FV+Y++  
Sbjct: 402 ELERPIKVPVVIPVLMTLISVFLVLAPIISKPTWEYLYCVLFILSGLLFYFLFVHYKFGW 461

Query: 136 PYLDN--ITYFIQVLLKVVPPDQTDPD 160
               +  IT  +Q+L++VVPP++ DP+
Sbjct: 462 AQKISKPITMHLQMLMEVVPPEE-DPE 487

Involved in the high-affinity, sodium-independent transport of cystine and neutral and dibasic amino acids (system b(0,+)-like activity). Thought to be responsible for the high-affinity reabsorption of cystine in the kidney tubule.
Homo sapiens (taxid: 9606)

>sp|Q9QXA6|BAT1_MOUSE B(0,+)-type amino acid transporter 1 OS=Mus musculus GN=Slc7a9 PE=2 SV=1

 Score =  115 bits (288), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/212 (36%), Positives = 111/212 (52%), Gaps = 54/212 (25%)

Query: 1   MDPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGH 60
           M P  E++ S AVAV F +RVL P  ++VPL V  +T G A    F   RL Y AGREGH
Sbjct: 278 MTPT-ELLQSQAVAVTFGDRVLYPASWVVPLFVAFSTIGAANGTCFTAGRLIYVAGREGH 336

Query: 61  MLQAFSFVHVKRLTPAPAV----------------------------LF----------- 81
           ML+  S++ VKRLTPAPA+                            LF           
Sbjct: 337 MLKVLSYISVKRLTPAPALIFYGIIAIIYIIPGDINSLVNYFSFAAWLFYGMTILGLVVM 396

Query: 82  -----------QVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVY 130
                      +VPL IPI V+++S+ L L PI+++PA ++L  V FI+ G++ Y  FVY
Sbjct: 397 RFTRKDLERPIKVPLFIPIIVILVSLFLILAPIISEPAWEYLYCVLFILSGLIFYFLFVY 456

Query: 131 YQYRMPYLDN--ITYFIQVLLKVVPPDQTDPD 160
           Y++      +  +T  +Q+L++VVPP++ DP+
Sbjct: 457 YKFGWAQRISRPVTKHLQMLMEVVPPEK-DPE 487

Involved in the high-affinity, sodium-independent transport of cystine and neutral and dibasic amino acids (system B(0,+)-like activity). Thought to be responsible for the high-affinity reabsorption of cystine in the kidney proximal tubule.

Mus musculus (taxid: 10090)

>sp|Q9N1R6|BAT1_RABIT B(0,+)-type amino acid transporter 1 OS=Oryctolagus cuniculus GN=SLC7A9 PE=1 SV=1

 Score =  111 bits (278), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 105/212 (49%), Gaps = 54/212 (25%)

Query: 1   MDPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGH 60
           M P  E++ S AVAV F +RVL P  +IVP+ V  +T G A    F   RL Y AGREGH
Sbjct: 278 MTPT-ELLQSQAVAVTFGDRVLYPASWIVPVFVAFSTIGAANGTCFTAGRLVYVAGREGH 336

Query: 61  MLQAFSFVHVKRLTPAPAVLF--------------------------------------- 81
           ML+  S++ V+RLTPAPA++F                                       
Sbjct: 337 MLKVLSYISVRRLTPAPAIIFYGIVATIYIIPGDINSLVNYFSFATWLFYGLTILGLIVM 396

Query: 82  -----------QVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVY 130
                      +VP+ IPI V  ++  L L P++T PA ++L  V FI+ G++ Y  FVY
Sbjct: 397 RFTRKELERPIKVPIFIPILVTFIAAFLVLAPVITNPAWEYLYCVLFILSGLVFYFLFVY 456

Query: 131 YQYRMPYLDN--ITYFIQVLLKVVPPDQTDPD 160
           Y++      +  IT  +Q+L++VVPP+  DP 
Sbjct: 457 YKFEWAQKISKPITMHLQMLMEVVPPEP-DPK 487

Involved in the high-affinity, sodium-independent transport of cystine and neutral and dibasic amino acids (system b(0,+)-like activity). Thought to be responsible for the high-affinity reabsorption of cystine in the kidney tubule.

Oryctolagus cuniculus (taxid: 9986)

>sp|P82252|BAT1_RAT B(0,+)-type amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a9 PE=1 SV=1

 Score =  103 bits (258), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 107/212 (50%), Gaps = 54/212 (25%)

Query: 1   MDPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGH 60
           M P  E++ S AVAV F +RVL P  ++VPL V  +T G A    F   RL Y AGREGH
Sbjct: 278 MTPT-ELLQSQAVAVTFGDRVLYPASWVVPLFVAFSTIGAANGTCFTAGRLIYVAGREGH 336

Query: 61  MLQAFSFVHVKRLTPAPAV----------------------------LFQVPLVIPIFVL 92
           ML+  S++ VKRLTPAPA+                            LF    ++ + V+
Sbjct: 337 MLKVLSYISVKRLTPAPALVFYGIIAIIYIIPGDINSLVNYFSFAAWLFYGMTILGLVVM 396

Query: 93  ----------------------IMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVY 130
                                 ++S+ L L PI++ PA ++L  V FI+ G++ Y  FV+
Sbjct: 397 RFTRKDLERPIKVPIFIPIIVILVSVFLILAPIISSPAWEYLYCVLFILSGLIFYFLFVH 456

Query: 131 YQYRMPYLDN--ITYFIQVLLKVVPPDQTDPD 160
           Y++R     +  IT  +Q+L++VVPP++ DP+
Sbjct: 457 YKFRWAQKISRPITKHLQMLMEVVPPEK-DPE 487

Involved in the high-affinity, sodium-independent transport of cystine and neutral and dibasic amino acids (system B(0,+)-like activity). Thought to be responsible for the high-affinity reabsorption of cystine in the kidney proximal tubule.

Rattus norvegicus (taxid: 10116)

>sp|Q9WTR6|XCT_MOUSE Cystine/glutamate transporter OS=Mus musculus GN=Slc7a11 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 88/210 (41%), Gaps = 61/210 (29%)

Query: 6   EMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAF 65
           E++ S AVAV FSER+LG F   VP+ V L+ FG      F V+RL Y A REGH+ +  
Sbjct: 296 ELLQSSAVAVTFSERLLGKFSLAVPIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEIL 355

Query: 66  SFVHVKRLTPAPAVL--------------------------------------------- 80
           S +HV + TP PAV+                                             
Sbjct: 356 SMIHVHKHTPLPAVIVLHPLTMVMLFSGDLYSLLNFLSFARWLFMGLAVAGLIYLRYKRP 415

Query: 81  -----FQVPLVIPI---FVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQ 132
                F+VPL IP    F  +  +VLSL          FLI +     G+  Y  F+ + 
Sbjct: 416 DMHRPFKVPLFIPALFSFTCLFMVVLSLYSDPFSTGVGFLITLT----GVPAYYLFIVWD 471

Query: 133 YRMPYL----DNITYFIQVLLKVVPPDQTD 158
            +  +     D IT  +Q++L+VVP D  +
Sbjct: 472 KKPKWFRRLSDRITRTLQIILEVVPEDSKE 501

Sodium-independent, high-affinity exchange of anionic amino acids with high specificity for anionic form of cystine and glutamate.

Mus musculus (taxid: 10090)

>sp|Q9WVR6|LAT2_RAT Large neutral amino acids transporter small subunit 2 OS=Rattus norvegicus GN=Slc7a8 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 94/213 (44%), Gaps = 55/213 (25%)

Query: 6   EMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAF 65
           E++AS AVAV F E++LG   +I+P+ V L+TFG      F  +RL +A  REGH+    
Sbjct: 296 ELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSLFTSSRLFFAGAREGHLPSVL 355

Query: 66  SFVHVKRLTPAPAVLF-------------------------------------------- 81
           + +HVKR TP PA+LF                                            
Sbjct: 356 AMIHVKRCTPIPALLFTCLSTLLMLVTSDMYTLINYVGFINYLFYGVTVAGQIVLRWKKP 415

Query: 82  ------QVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQYR- 134
                 ++ L+ PI  L+    L +  + ++P     I +A ++ G+ VY   VY+Q++ 
Sbjct: 416 DIPRPIKISLLFPIIYLLFWAFLLIFSLWSEPV-VCGIGLAIMLTGVPVYFLGVYWQHKP 474

Query: 135 ---MPYLDNITYFIQVLLKVVPPDQTDPDNSDT 164
                +++++T   Q +  VV P + D    +T
Sbjct: 475 KCFNDFIESLTLVSQKMCVVVYPQEGDSGTEET 507

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.

Rattus norvegicus (taxid: 10116)

>sp|Q9QXW9|LAT2_MOUSE Large neutral amino acids transporter small subunit 2 OS=Mus musculus GN=Slc7a8 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 50/76 (65%)

Query: 6   EMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAF 65
           E++AS AVAV F E++LG   +I+P+ V L+TFG      F  +RL +A  REGH+    
Sbjct: 294 ELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSLFTSSRLFFAGAREGHLPSVL 353

Query: 66  SFVHVKRLTPAPAVLF 81
           + +HVKR TP PA+LF
Sbjct: 354 AMIHVKRCTPIPALLF 369

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.

Mus musculus (taxid: 10090)

>sp|Q9N1Q4|LAT2_RABIT Large neutral amino acids transporter small subunit 2 OS=Oryctolagus cuniculus GN=SLC7A8 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 50/76 (65%)

Query: 6   EMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAF 65
           E++AS AVAV F E++LG   +I+P+ V L+TFG      F  +RL +A  REGH+    
Sbjct: 295 ELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSLFTSSRLFFAGAREGHLPSVL 354

Query: 66  SFVHVKRLTPAPAVLF 81
           + +HVKR TP PA+LF
Sbjct: 355 AMIHVKRCTPIPALLF 370

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q5RAG7|XCT_PONAB Cystine/glutamate transporter OS=Pongo abelii GN=SLC7A11 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 52/82 (63%)

Query: 6   EMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAF 65
           E++ S AVAV FSER+LG F   VP+ V L+ FG      F V+RL Y A REGH+ +  
Sbjct: 296 ELLLSNAVAVTFSERLLGNFSLAVPIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEIL 355

Query: 66  SFVHVKRLTPAPAVLFQVPLVI 87
           S +HV++ TP PAV+   PL +
Sbjct: 356 SMIHVRKHTPLPAVIVLHPLTM 377

Sodium-independent, high-affinity exchange of anionic amino acids with high specificity for anionic form of cystine and glutamate.

Pongo abelii (taxid: 9601)

>sp|Q9UPY5|XCT_HUMAN Cystine/glutamate transporter OS=Homo sapiens GN=SLC7A11 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 52/82 (63%)

Query: 6   EMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAF 65
           E++ S AVAV FSER+LG F   VP+ V L+ FG      F V+RL Y A REGH+ +  
Sbjct: 296 ELLLSNAVAVTFSERLLGNFSLAVPIFVALSCFGSMNGGVFAVSRLFYVASREGHLPEIL 355

Query: 66  SFVHVKRLTPAPAVLFQVPLVI 87
           S +HV++ TP PAV+   PL +
Sbjct: 356 SMIHVRKHTPLPAVIVLHPLTM 377

Sodium-independent, high-affinity exchange of anionic amino acids with high specificity for anionic form of cystine and glutamate.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
193676389	504	PREDICTED: B(0,+)-type amino acid transp	0.827	0.343	0.454	2e-44
158294548	489	AGAP005653-PA [Anopheles gambiae str. PE	0.722	0.308	0.432	5e-39
157118768	486	cationic amino acid transporter [Aedes a	0.722	0.310	0.427	9e-38
170058669	485	cationic amino acid transporter [Culex q	0.722	0.311	0.422	3e-37
91078280	496	PREDICTED: similar to cationic amino aci	0.717	0.302	0.448	5e-37
270003913	493	hypothetical protein TcasGA2_TC003203 [T	0.717	0.304	0.436	3e-35
307169541	486	B(0,+)-type amino acid transporter 1 [Ca	0.732	0.314	0.406	2e-34
66520616	485	PREDICTED: B(0,+)-type amino acid transp	0.732	0.315	0.401	6e-34
312373566	193	hypothetical protein AND_17288 [Anophele	0.660	0.715	0.414	2e-32
340716562	485	PREDICTED: B(0,+)-type amino acid transp	0.732	0.315	0.401	4e-32

>gi|193676389|ref|XP_001943940.1| PREDICTED: B(0,+)-type amino acid transporter 1-like [Acyrthosiphon pisum]

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/229 (45%), Positives = 131/229 (57%), Gaps = 56/229 (24%)

Query: 4   VFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQ 63
           V EM +  AVAV F  R LG F FI+PLGV  ATFGCALSVQFG+TRLC+AA REG ML+
Sbjct: 275 VAEMTSVQAVAVEFGTRALGSFSFIIPLGVATATFGCALSVQFGITRLCFAASREGQMLE 334

Query: 64  AFSFVHVKRLTPAPAVL------------------------------------------- 80
            FS+V VK+LTPAPAV+                                           
Sbjct: 335 VFSYVSVKKLTPAPAVVLQGLLTLICLLCGDIVVLIEFASFLVWMFYGISMAALLVMRYT 394

Query: 81  -------FQVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQY 133
                  F+VP++IPIFVLI+S VL +TPI+  P PQFLI + FI+   L+YIPFVY + 
Sbjct: 395 KRDVKRPFKVPIIIPIFVLIVSTVLFITPILNDPKPQFLIGLVFILSAFLIYIPFVYQKK 454

Query: 134 RMPYLDNITYFIQVLLKVVPPDQTDPDNSDTESNGVSLSVKHSSDDVQA 182
           R+  +DN T FIQVL+ VVPP++   D  D E N    +VK +  + +A
Sbjct: 455 RLSIVDNFTKFIQVLMVVVPPEK---DEEDAEEN---CNVKDNEGETEA 497

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158294548|ref|XP_315672.4| AGAP005653-PA [Anopheles gambiae str. PEST] gi|157015614|gb|EAA11727.4| AGAP005653-PA [Anopheles gambiae str. PEST]

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 87/201 (43%), Positives = 116/201 (57%), Gaps = 50/201 (24%)

Query: 6   EMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAF 65
           EMIAS AV + F +R LG F F++PLGV LATFGCALS+QFGVTRLCY A +EG ML+  
Sbjct: 286 EMIASEAVGIDFGDRALGSFSFLIPLGVALATFGCALSIQFGVTRLCYVASQEGQMLEPL 345

Query: 66  SFVHVKRLTPAPAVLFQ------------------------------------------- 82
           S++HV+R TPAPAV  Q                                           
Sbjct: 346 SYIHVRRATPAPAVAMQGILALAFILVGNIETLIEFASFLIWFFYGAAVVALLALRRTQP 405

Query: 83  -------VPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQYRM 135
                  VPL++P   L +SI LS+ P+++ P+P++L AVAFI+ G+LVY PFVYY+ R 
Sbjct: 406 DVHRPYKVPLIVPYITLAVSIFLSIVPVISDPSPKYLFAVAFILSGVLVYTPFVYYKVRP 465

Query: 136 PYLDNITYFIQVLLKVVPPDQ 156
            +++ +T+ IQVL +VVP   
Sbjct: 466 RWINKLTFLIQVLFEVVPSSS 486

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157118768|ref|XP_001653251.1| cationic amino acid transporter [Aedes aegypti] gi|157126321|ref|XP_001654593.1| cationic amino acid transporter [Aedes aegypti] gi|108875590|gb|EAT39815.1| AAEL008406-PA [Aedes aegypti] gi|108882565|gb|EAT46790.1| AAEL002063-PA [Aedes aegypti]

 Score =  162 bits (410), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 114/201 (56%), Gaps = 50/201 (24%)

Query: 6   EMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAF 65
           EMI S AV + F +RVLG F F++PLGV L+TFGCALS+QFGVTRLCY A +EG ML+  
Sbjct: 283 EMIQSEAVGLDFGDRVLGSFSFLIPLGVALSTFGCALSIQFGVTRLCYVASQEGQMLEPL 342

Query: 66  SFVHVKRLTPAPAVLFQ------------------------------------------- 82
           S++HV+R TP PAV  Q                                           
Sbjct: 343 SYIHVRRATPTPAVAMQGILAFAFILVGNIEELIELASFLIWFFYGSAFIALLTLRKTQP 402

Query: 83  -------VPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQYRM 135
                  VPL +PIF L +SI LS+ PI+ +P+P++  AVAFI+ G+ VY PFVYY+ R 
Sbjct: 403 DTPRPYKVPLFVPIFALGVSIFLSVVPIIAEPSPKYFFAVAFILSGVAVYTPFVYYKIRP 462

Query: 136 PYLDNITYFIQVLLKVVPPDQ 156
            +++ +TY IQVL + VP  +
Sbjct: 463 KWMNKLTYLIQVLFEAVPTAE 483

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170058669|ref|XP_001865021.1| cationic amino acid transporter [Culex quinquefasciatus] gi|167877697|gb|EDS41080.1| cationic amino acid transporter [Culex quinquefasciatus]

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/201 (42%), Positives = 112/201 (55%), Gaps = 50/201 (24%)

Query: 6   EMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAF 65
           EMI S AV + F  R LG F F++PLGV L+TFGCALS+QFGVTRLCY A +EG ML+  
Sbjct: 282 EMINSEAVGLDFGARTLGSFSFLIPLGVALSTFGCALSIQFGVTRLCYVASQEGQMLEPL 341

Query: 66  SFVHVKRLTPAPAVLFQ------------------------------------------- 82
           S++HV+R TP PAV+ Q                                           
Sbjct: 342 SYIHVRRATPVPAVIMQGILAFAFIMVGNIETLIELASFLIWFFYGSAFIALLTLRRTQP 401

Query: 83  -------VPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQYRM 135
                  VPL +PIF L +S+ LS+ PIV+ P+P++  AV FI+ G+ VY PFVYY  R 
Sbjct: 402 NVHRPYKVPLFVPIFALAVSVFLSVVPIVSDPSPKYFFAVGFILSGVAVYTPFVYYGIRP 461

Query: 136 PYLDNITYFIQVLLKVVPPDQ 156
            ++D +TY +QVL +VVP  +
Sbjct: 462 KWMDKVTYLLQVLYEVVPNSE 482

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078280|ref|XP_971788.1| PREDICTED: similar to cationic amino acid transporter [Tribolium castaneum]

 Score =  159 bits (403), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 120/203 (59%), Gaps = 53/203 (26%)

Query: 6   EMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAF 65
           EMI SPAVAV F ERVLGP  F++PLGV LATFGCALS+QFGVTR+CY AG++G M+++ 
Sbjct: 291 EMINSPAVAVTFGERVLGPLAFLIPLGVALATFGCALSIQFGVTRVCYVAGQDGLMIKSL 350

Query: 66  SFVHVKRLTPAPAVL--------------------------------------------- 80
           SFVH +RLTP+ AV+                                             
Sbjct: 351 SFVHHERLTPSFAVVSQGILSLLFIVAGDIVELIEFVSFLIWIFYGLAFVSLLVLRRTMK 410

Query: 81  -----FQVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQYRM 135
                ++VP  I +FVL+++I LS+TPI+T P P++L+A+AFI++G+LVY  FV Y+ R 
Sbjct: 411 DAPRPYKVPTWICVFVLLVAIYLSVTPIITDPTPKYLLALAFILVGVLVYYWFV-YKKRT 469

Query: 136 PYL--DNITYFIQVLLKVVPPDQ 156
           P L     T FIQ+L   VPPD 
Sbjct: 470 PELLMRKFTRFIQILFAAVPPDN 492

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003913|gb|EFA00361.1| hypothetical protein TcasGA2_TC003203 [Tribolium castaneum]

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/204 (43%), Positives = 118/204 (57%), Gaps = 54/204 (26%)

Query: 6   EMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAF 65
           EMI SPAVAV F ERVLGP  F++PLGV LATFGCALS+QFGVTR+CY AG++G M+++ 
Sbjct: 287 EMINSPAVAVTFGERVLGPLAFLIPLGVALATFGCALSIQFGVTRVCYVAGQDGLMIKSL 346

Query: 66  SFVHVKRLTPAPAVL--------------------------------------------- 80
           SFVH +RLTP+ AV+                                             
Sbjct: 347 SFVHHERLTPSFAVVSQGILSLLFIVAGDIVELIEFVSFLIWIFYGLAFVSLLVLRRTMK 406

Query: 81  -----FQVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQYRM 135
                ++VP  I +FVL+++I LS+TPI+T P P++L+A+AFI++G+LVY  FV Y+ R 
Sbjct: 407 DAPRPYKVPTWICVFVLLVAIYLSVTPIITDPTPKYLLALAFILVGVLVYYWFV-YKKRT 465

Query: 136 PYL---DNITYFIQVLLKVVPPDQ 156
           P L      T F  +L   VPPD 
Sbjct: 466 PELLMSMRFTIFCGILFAAVPPDN 489

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169541|gb|EFN62183.1| B(0,+)-type amino acid transporter 1 [Camponotus floridanus]

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 83/204 (40%), Positives = 122/204 (59%), Gaps = 51/204 (25%)

Query: 6   EMIASPAVAVAFSERVLGPFQ-FIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQA 64
           EM+++PAVAV ++ERVL  +  F++PLGVVL+TFGCALS+QF V+RLC+ AGREGH+ + 
Sbjct: 282 EMVSAPAVAVLWAERVLPSWMGFVIPLGVVLSTFGCALSIQFSVSRLCFVAGREGHIPRV 341

Query: 65  FSFVHVKRLTPAPAVLFQ------------------------------------------ 82
           FS+VH++++TPAPAV+FQ                                          
Sbjct: 342 FSYVHIEKMTPAPAVIFQGMLSLLCLLLGDIIALIEFASFLMWVFYGFAMTSLIIMRRTK 401

Query: 83  --------VPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQYR 134
                   VP+VIP  VL +SI L++ PI+ +P+ ++L A+AF++ GI++Y  +VY + R
Sbjct: 402 PNASRPYAVPIVIPWLVLGISIFLAVLPIIYEPSTKYLFALAFVLCGIVLYHIYVYKKTR 461

Query: 135 MPYLDNITYFIQVLLKVVPPDQTD 158
              L  +TYFIQ L  VV PD+ +
Sbjct: 462 SILLAKLTYFIQSLCLVVAPDERE 485

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66520616|ref|XP_393777.2| PREDICTED: B(0,+)-type amino acid transporter 1-like [Apis mellifera]

 Score =  149 bits (377), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 82/204 (40%), Positives = 119/204 (58%), Gaps = 51/204 (25%)

Query: 6   EMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQA 64
           EM+ +PAVAV ++++VL  +  F++PLGV ++TFGC+LS+QFGV+RLCY AGREGH+ + 
Sbjct: 282 EMVRAPAVAVLWAKKVLPSWLGFVIPLGVAISTFGCSLSIQFGVSRLCYVAGREGHVPRV 341

Query: 65  FSFVHVKRLTPAPAVLFQ------------------------------------------ 82
           FSFVH++++TPA AV FQ                                          
Sbjct: 342 FSFVHIEKMTPAAAVAFQGLLTLLYLLTGDIIALIEFASFLTWVFYGFAMLSLIIMRRTK 401

Query: 83  --------VPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQYR 134
                   VP+++P  +L +SI L++TPIV +P P++L A+ F++LGILVY  +VY + +
Sbjct: 402 PNASRPYAVPILVPWLILGVSIFLAVTPIVHEPTPKYLFALLFVLLGILVYHTYVYKKVK 461

Query: 135 MPYLDNITYFIQVLLKVVPPDQTD 158
                 ITY IQVL  VV PD+ D
Sbjct: 462 SSLATKITYLIQVLCLVVAPDKED 485

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373566|gb|EFR21281.1| hypothetical protein AND_17288 [Anopheles darlingi]

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/188 (41%), Positives = 104/188 (55%), Gaps = 50/188 (26%)

Query: 3   PVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHML 62
           P+ EMI S AV + F +R LG F FI+P+GV LATFGCALS+QFGVTRLCY A +EG ML
Sbjct: 5   PIDEMINSEAVGIDFGDRALGWFSFIIPVGVALATFGCALSIQFGVTRLCYVASQEGQML 64

Query: 63  QAFSFVHVKRLTPAPAVLFQ---------------------------------------- 82
           +  S++HV+R TPAPAV  Q                                        
Sbjct: 65  EPLSYIHVRRSTPAPAVAMQGVLALAFILVGNIETLIEFASFLIWFFYGSAVVALLALRR 124

Query: 83  ----------VPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQ 132
                     VPL++P   L +S+ LS+ P+VT P+P++L A+ FI+ G+LVY PFVYY+
Sbjct: 125 TQPTIHRPYKVPLIVPFITLAVSVFLSVVPVVTDPSPKYLFALGFILSGVLVYTPFVYYK 184

Query: 133 YRMPYLDN 140
            R  ++  
Sbjct: 185 IRPRWIKQ 192

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716562|ref|XP_003396766.1| PREDICTED: B(0,+)-type amino acid transporter 1-like [Bombus terrestris]

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/204 (40%), Positives = 118/204 (57%), Gaps = 51/204 (25%)

Query: 6   EMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQA 64
           EM+++PAVAV ++E+VL  +  F++PLGV L+TFGC+LS+QFGV+RLCY AG EGH+ + 
Sbjct: 282 EMVSAPAVAVLWAEKVLPSWLSFVIPLGVALSTFGCSLSIQFGVSRLCYVAGSEGHVPRV 341

Query: 65  FSFVHVKRLTPAPAVLFQ------------------------------------------ 82
           FS+VH+ ++TP+ AV FQ                                          
Sbjct: 342 FSYVHIAKMTPSAAVAFQGLLTLFCMLLGDIIALIEFASFLTWVFYGLAMLSLIIMRRTK 401

Query: 83  --------VPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQYR 134
                   VP++IP  VL++SI L++TPIV +P+P++L A+ FI+ GI VY  +VY + R
Sbjct: 402 PDASRPYAVPILIPWLVLLVSIFLAVTPIVHEPSPKYLFALLFILGGIGVYHTYVYKKVR 461

Query: 135 MPYLDNITYFIQVLLKVVPPDQTD 158
                 ITY IQVL  VV PD+ +
Sbjct: 462 SILAMRITYLIQVLCLVVAPDKEN 485

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	209
UNIPROTKB|E1BT87	493	SLC7A9 "Uncharacterized protei	0.411	0.174	0.505	1.7e-31
ZFIN|ZDB-GENE-080116-2	492	slc7a9 "solute carrier family	0.411	0.174	0.482	2.9e-30
UNIPROTKB|I3L6F7	487	SLC7A9 "Uncharacterized protei	0.411	0.176	0.482	3.6e-29
ZFIN|ZDB-GENE-030616-586	531	slc7a8b "solute carrier family	0.382	0.150	0.469	1.2e-18
RGD|619904	533	Slc7a8 "solute carrier family	0.382	0.150	0.469	1.9e-18
FB|FBgn0030574	541	CG9413 [Drosophila melanogaste	0.732	0.282	0.389	5.8e-18
MGI|MGI:1355323	531	Slc7a8 "solute carrier family	0.382	0.150	0.469	6.3e-18
UNIPROTKB|H0YJ95	168	SLC7A7 "Y+L amino acid transpo	0.751	0.934	0.310	3.2e-17
UNIPROTKB|Q9N1Q4	535	SLC7A8 "Large neutral amino ac	0.382	0.149	0.469	4.4e-17
UNIPROTKB|F1MYX6	528	SLC7A8 "Uncharacterized protei	0.382	0.151	0.469	5.3e-17

UNIPROTKB|E1BT87 SLC7A9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 215 (80.7 bits), Expect = 1.7e-31, Sum P(2) = 1.7e-31
 Identities = 44/87 (50%), Positives = 59/87 (67%)

Query:     6 EMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAF 65
             E++ S AVAV F +RVL P  +I+PL V  +T G A  V F   RL Y AGREGHML+  
Sbjct:   288 ELLQSQAVAVTFGDRVLYPASWIIPLFVAFSTIGSANGVCFTAGRLVYVAGREGHMLEVL 347

Query:    66 SFVHVKRLTPAPAVLFQVPLVIPIFVL 92
             S++ VKRLTPAPA++F   + I I+++
Sbjct:   348 SYISVKRLTPAPAIIFHGAIAI-IYII 373

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-080116-2 slc7a9 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 9" [Danio rerio (taxid:7955)]

 Score = 201 (75.8 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
 Identities = 42/87 (48%), Positives = 59/87 (67%)

Query:     6 EMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAF 65
             E++ S AVAV F +RVL P  +IVP+ VV +TFG A    F   RL Y AGREGHM++  
Sbjct:   288 ELLQSSAVAVTFGDRVLYPLSWIVPVFVVCSTFGAANGSCFTAGRLTYVAGREGHMVKIM 347

Query:    66 SFVHVKRLTPAPAVLFQVPLVIPIFVL 92
             S++ VKR TP+PA++F   +V  I+++
Sbjct:   348 SYISVKRYTPSPALMFN-GIVSIIYIM 373

GO:0016020 "membrane" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|I3L6F7 SLC7A9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 208 (78.3 bits), Expect = 3.6e-29, Sum P(2) = 3.6e-29
 Identities = 42/87 (48%), Positives = 58/87 (66%)

Query:     6 EMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAF 65
             E++ S AVAV F +RVL P  ++VPL V  +T G A    F   RL Y AGREGHML+  
Sbjct:   282 ELLQSQAVAVTFGDRVLYPASWVVPLFVAFSTIGAANGSCFTAGRLVYVAGREGHMLKVL 341

Query:    66 SFVHVKRLTPAPAVLFQVPLVIPIFVL 92
             S++ VKRLTPAPA++F   ++  I+++
Sbjct:   342 SYISVKRLTPAPAIIFH-GIIATIYII 367

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

ZFIN|ZDB-GENE-030616-586 slc7a8b "solute carrier family 7 (cationic amino acid transporter, y+ system), member 8b" [Danio rerio (taxid:7955)]

 Score = 182 (69.1 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
 Identities = 38/81 (46%), Positives = 52/81 (64%)

Query:     1 MDPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGH 60
             M P  E++AS AVAV F E++LG   +I+P+ V L+TFG      F  +RL +A  REGH
Sbjct:   290 MSPQ-ELLASNAVAVTFGEKLLGVMSWIMPISVALSTFGGVNGSLFTSSRLFFAGAREGH 348

Query:    61 MLQAFSFVHVKRLTPAPAVLF 81
             +    + +HVKR TP PA+LF
Sbjct:   349 LPSLLAMIHVKRCTPIPALLF 369

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|619904 Slc7a8 "solute carrier family 7 (amino acid transporter light chain, L system), member 8" [Rattus norvegicus (taxid:10116)]

 Score = 182 (69.1 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
 Identities = 38/81 (46%), Positives = 52/81 (64%)

Query:     1 MDPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGH 60
             M P  E++AS AVAV F E++LG   +I+P+ V L+TFG      F  +RL +A  REGH
Sbjct:   292 MSPQ-ELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSLFTSSRLFFAGAREGH 350

Query:    61 MLQAFSFVHVKRLTPAPAVLF 81
             +    + +HVKR TP PA+LF
Sbjct:   351 LPSVLAMIHVKRCTPIPALLF 371

GO:0003333 "amino acid transmembrane transport" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006865 "amino acid transport" evidence=ISO

GO:0015101 "organic cation transmembrane transporter activity" evidence=IEA;ISO

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISO;ISS

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IEA;ISO

GO:0015695 "organic cation transport" evidence=ISO

GO:0015804 "neutral amino acid transport" evidence=ISS

GO:0015807 "L-amino acid transport" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0019534 "toxin transporter activity" evidence=IEA;ISO

GO:0042605 "peptide antigen binding" evidence=ISS

FB|FBgn0030574 CG9413 [Drosophila melanogaster (taxid:7227)]

 Score = 226 (84.6 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 62/159 (38%), Positives = 86/159 (54%)

Query:     1 MDPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGH 60
             M P  EMI S AVAV F  R+LG   +++PL V ++TFG A    F   RLC+AA REGH
Sbjct:   332 MSPQ-EMIESEAVAVTFGNRILGALAWLMPLSVTISTFGSANGTLFAAGRLCFAASREGH 390

Query:    61 MLQAFSFVHVKRLTPAPAVLFQVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVL 120
             +L   S+VHV+RLTPAP ++F   L+    VL  +I  SL    +  A  F    A + L
Sbjct:   391 LLDILSYVHVRRLTPAPGLIFH-SLIASAMVLHGTID-SLIDFFSFTAWIFY-GGAMLAL 447

Query:   121 GILVYIPFVYYQ-YRMPYLDNITYF-IQVLLKVVPPDQT 157
              ++ Y    Y + Y++P +  +    I V L   P  +T
Sbjct:   448 IVMRYTKPNYPRPYKVPIIIPVVVLVISVYLVAAPIFET 486

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=ISS

MGI|MGI:1355323 Slc7a8 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 8" [Mus musculus (taxid:10090)]

 Score = 182 (69.1 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
 Identities = 38/81 (46%), Positives = 52/81 (64%)

Query:     1 MDPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGH 60
             M P  E++AS AVAV F E++LG   +I+P+ V L+TFG      F  +RL +A  REGH
Sbjct:   290 MSPQ-ELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSLFTSSRLFFAGAREGH 348

Query:    61 MLQAFSFVHVKRLTPAPAVLF 81
             +    + +HVKR TP PA+LF
Sbjct:   349 LPSVLAMIHVKRCTPIPALLF 369

GO:0003333 "amino acid transmembrane transport" evidence=IDA

GO:0005275 "amine transmembrane transporter activity" evidence=ISA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO;ISA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=ISO;ISA

GO:0015101 "organic cation transmembrane transporter activity" evidence=ISO

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISO

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IDA

GO:0015695 "organic cation transport" evidence=ISO

GO:0015807 "L-amino acid transport" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019534 "toxin transporter activity" evidence=ISO

GO:0055085 "transmembrane transport" evidence=ISA

UNIPROTKB|H0YJ95 SLC7A7 "Y+L amino acid transporter 1" [Homo sapiens (taxid:9606)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 51/164 (31%), Positives = 86/164 (52%)

Query:     6 EMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAF 65
             +++AS AVAV F++++ G F +I+PL V L+ FG   +     +RL +   REGH+  A 
Sbjct:     4 DILASDAVAVTFADQIFGIFNWIIPLSVALSCFGGLNASIVAASRLFFVGSREGHLPDAI 63

Query:    66 SFVHVKRLTPAPAVLFQVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVY 125
               +HV+R TP P++LF + +  PI   + +I L   P+ +      LI +A  + G+  Y
Sbjct:    64 CMIHVERFTPVPSLLFNLSVFFPIVFCLCTIFLVAVPLYSDTINS-LIGIAIALSGLPFY 122

Query:   126 IPFVYY-QYRMP-YLDNI----TYFIQVLLKVVPPDQTDPDNSD 163
                +   +++ P YL  I    T ++QVL   V  +    D  +
Sbjct:   123 FLIIRVPEHKRPLYLRRIVGSATRYLQVLCMSVAAEMDLEDGGE 166

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9N1Q4 SLC7A8 "Large neutral amino acids transporter small subunit 2" [Oryctolagus cuniculus (taxid:9986)]

 Score = 182 (69.1 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
 Identities = 38/81 (46%), Positives = 52/81 (64%)

Query:     1 MDPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGH 60
             M P  E++AS AVAV F E++LG   +I+P+ V L+TFG      F  +RL +A  REGH
Sbjct:   291 MSPQ-ELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSLFTSSRLFFAGAREGH 349

Query:    61 MLQAFSFVHVKRLTPAPAVLF 81
             +    + +HVKR TP PA+LF
Sbjct:   350 LPSVLAMIHVKRCTPIPALLF 370

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0015804 "neutral amino acid transport" evidence=IDA

GO:0016021 "integral to membrane" evidence=TAS

GO:0042605 "peptide antigen binding" evidence=IPI

UNIPROTKB|F1MYX6 SLC7A8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 182 (69.1 bits), Expect = 5.3e-17, Sum P(2) = 5.3e-17
 Identities = 38/81 (46%), Positives = 52/81 (64%)

Query:     1 MDPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGH 60
             M P  E++AS AVAV F E++LG   +I+P+ V L+TFG      F  +RL +A  REGH
Sbjct:   288 MSPQ-ELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSLFTSSRLFFAGAREGH 346

Query:    61 MLQAFSFVHVKRLTPAPAVLF 81
             +    + +HVKR TP PA+LF
Sbjct:   347 LPSVLAMIHVKRCTPIPALLF 367

GO:0019534 "toxin transporter activity" evidence=IEA

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IEA

GO:0015101 "organic cation transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	209
TIGR00911	501	TIGR00911, 2A0308, L-type amino acid transporter	1e-18
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	9e-08
pfam13520	425	pfam13520, AA_permease_2, Amino acid permease	5e-04

>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter

 Score = 82.9 bits (205), Expect = 1e-18
 Identities = 36/82 (43%), Positives = 49/82 (59%)

Query: 6   EMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAF 65
           E++AS AVAV F ER+LG   + +P  V L+ FG      F  +RL +  GREGH+    
Sbjct: 298 ELLASLAVAVDFGERLLGVMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLPSLL 357

Query: 66  SFVHVKRLTPAPAVLFQVPLVI 87
           S +HVKRLTP P++L    L +
Sbjct: 358 SMIHVKRLTPLPSLLIVCTLTL 379

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 501

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 51.3 bits (123), Expect = 9e-08
 Identities = 28/115 (24%), Positives = 55/115 (47%)

Query: 12  AVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVK 71
            +A+A           I+ +  +L+ FG  L+    V+R+ YA  R+G + + F+ V+ K
Sbjct: 273 PLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPK 332

Query: 72  RLTPAPAVLFQVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYI 126
             TP  A++    + + + +L     ++   +V+  +  FLIA   + L +LV  
Sbjct: 333 GRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLR 387

Length = 466

>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 8/137 (5%)

Query: 10  SPAVAVAFSERVLGP-FQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFV 68
            P+VA    E V GP    IV + + L+  G   +     +R+  A  R+G + + F+ V
Sbjct: 256 LPSVAALLFEAVGGPWGAIIVVILLALSLLGAVNTAIVASSRVLEALARDGVLPKFFAKV 315

Query: 69  HVKRLTPAPAVLFQVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPF 128
           + K  +P  A++    L + + +L +    +   +++      L AV ++++ +L+ I  
Sbjct: 316 N-KFGSPVRALILTAILSLILLLLFLLSGAAYNALLS------LSAVGYLLVYLLLIIGL 368

Query: 129 VYYQYRMPYLDNITYFI 145
           +  + + P L  I    
Sbjct: 369 LILRKKRPDLPRIKGRW 385

Length = 425

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	209
KOG1287|consensus	479		100.0
TIGR00911	501	2A0308 L-type amino acid transporter.	99.85
PRK11357	445	frlA putative fructoselysine transporter; Provisio	99.73
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	99.68
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	99.64
PRK10655	438	potE putrescine transporter; Provisional	99.63
TIGR00909	429	2A0306 amino acid transporter.	99.61
TIGR00906	557	2A0303 cationic amino acid transport permease.	99.6
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	99.59
PRK10644	445	arginine:agmatin antiporter; Provisional	99.59
PRK11387	471	S-methylmethionine transporter; Provisional	99.54
PRK15049	499	L-asparagine permease; Provisional	99.45
PRK10197	446	gamma-aminobutyrate transporter; Provisional	99.45
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	99.45
PRK10746	461	putative transport protein YifK; Provisional	99.44
PRK10836	489	lysine transporter; Provisional	99.43
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	99.42
PRK11021	410	putative transporter; Provisional	99.41
PRK10580	457	proY putative proline-specific permease; Provision	99.37
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	99.35
TIGR00930	953	2a30 K-Cl cotransporter.	99.32
TIGR00913	478	2A0310 amino acid permease (yeast).	99.32
TIGR00907	482	2A0304 amino acid permease (GABA permease).	99.27
PRK10249	458	phenylalanine transporter; Provisional	99.26
PRK10238	456	aromatic amino acid transporter; Provisional	99.26
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	99.22
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	99.19
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	99.06
COG0833	541	LysP Amino acid transporters [Amino acid transport	99.06
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	98.95
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	98.91
COG0531	466	PotE Amino acid transporters [Amino acid transport	98.9
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	98.83
KOG1286|consensus	554		98.81
PRK15238	496	inner membrane transporter YjeM; Provisional	98.71
KOG1289|consensus	550		98.51
KOG2082|consensus	1075		97.74
PF13906	51	AA_permease_C: C-terminus of AA_permease	97.6
KOG1288|consensus	945		95.64
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	95.38
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	95.07

>KOG1287|consensus

Probab=100.00  E-value=2.8e-34  Score=268.49  Aligned_cols=155  Identities=39%  Similarity=0.698  Sum_probs=148.6

Q ss_pred             CChHHHhcChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhc
Q psy799            2 DPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLF   81 (209)
Q Consensus         2 ls~~el~~S~avAv~~a~~vlG~~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~   81 (209)
                      +|++|+.+|+|+|++|+++++|.++|++|+++++|++|++|+.++++||++|++|||||||..|+++|.++.||.+|+++
T Consensus       263 ls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf  342 (479)
T KOG1287|consen  263 LSPDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLF  342 (479)
T ss_pred             cCHHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             c--------------------------------------------------cchhHHHHHHHHHHHHHhhccccCchhHH
Q psy799           82 Q--------------------------------------------------VPLVIPIFVLIMSIVLSLTPIVTKPAPQF  111 (209)
Q Consensus        82 ~--------------------------------------------------vpliiPil~ll~~l~Ll~~~l~~~p~~~~  111 (209)
                      +                                                  +|+++|++++++|+++++.|++.++..++
T Consensus       343 ~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiKvpl~~p~~~~~~~i~lvvip~~~~~~~~~  422 (479)
T KOG1287|consen  343 SGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIKVPLFIPILFLLICIFLVVIPIISDFPVET  422 (479)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEeeeeehHHHHHHHHHHHhheeeeecCCccc
Confidence            7                                                  88999999999999999999999954779


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcCCcchhH----HHHHHHHhhhccCCCC
Q psy799          112 LIAVAFIVLGILVYIPFVYYQYRMPYLDN----ITYFIQVLLKVVPPDQ  156 (209)
Q Consensus       112 l~gl~~il~Gl~iY~~~v~~~~~p~~~~~----~t~~~Q~l~~v~~~~~  156 (209)
                      ++|+++++.|+|+|+++.|+|.||+|+++    +|++||++++|+|++.
T Consensus       423 ~ig~~i~l~G~~~Y~~~i~~~~~p~~~~~~~~~it~~~q~l~~~v~~~~  471 (479)
T KOG1287|consen  423 LIGIGIILSGVPFYFLFIHWKKKPKWLRKISESITRVCQKLFNVVPDEK  471 (479)
T ss_pred             hhHHHHHHHhhhhheEEEEecCCcHHHHHhhHHHHHHHHHHHHhcCccc
Confidence            99999999999999999999999999975    7999999999999855

>TIGR00911 2A0308 L-type amino acid transporter

Probab=99.85  E-value=4.9e-21  Score=179.36  Aligned_cols=154  Identities=35%  Similarity=0.599  Sum_probs=136.4

Q ss_pred             CChHHHhcChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhc
Q psy799            2 DPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLF   81 (209)
Q Consensus         2 ls~~el~~S~avAv~~a~~vlG~~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~   81 (209)
                      ++++++.++++++..+.++.+|..++++.+.+.++++|++|+.+++.||++|++||||++|++|+++|+|+++|+.|+++
T Consensus       294 ~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~v~~~~~~P~~all~  373 (501)
T TIGR00911       294 LSPEELLASLAVAVDFGERLLGVMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLI  373 (501)
T ss_pred             CCHHHHhcChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhcCCCCCCHHHHHH
Confidence            57788888877777888888886678899999999999999999999999999999999999999999999999999987


Q ss_pred             c--------------------------------------------------cchhHHHHHHHHHHHHHhhccccCchhHH
Q psy799           82 Q--------------------------------------------------VPLVIPIFVLIMSIVLSLTPIVTKPAPQF  111 (209)
Q Consensus        82 ~--------------------------------------------------vpliiPil~ll~~l~Ll~~~l~~~p~~~~  111 (209)
                      .                                                  .|.+.|+++++.|+++++.+++.+| ...
T Consensus       374 ~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~rp~r~p~~~~~l~~~~~~~~~~~~~~~~~-~~~  452 (501)
T TIGR00911       374 VCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRPIKVPLFFPVFFLLSCLFLIILSLYSPP-VGC  452 (501)
T ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCCccCchHHHHHHHHHHHHHhhhhhccCc-hhh
Confidence            6                                                  4557899999999999998888887 566


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcCCcchh----HHHHHHHHhhhccCCCC
Q psy799          112 LIAVAFIVLGILVYIPFVYYQYRMPYLD----NITYFIQVLLKVVPPDQ  156 (209)
Q Consensus       112 l~gl~~il~Gl~iY~~~v~~~~~p~~~~----~~t~~~Q~l~~v~~~~~  156 (209)
                      .++.++++.|+++|+...+++++|+|.+    +.|+.+|+.+++.|+++
T Consensus       453 ~~~~~~~~~g~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  501 (501)
T TIGR00911       453 GVGFIIMLTGVPVYFFGVWWQNKPKWFRYLIVSKTVLLQKVLEVVKPQK  501 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHhhccccceeeEEccccceecCCCC
Confidence            7888999999999998778888888863    58999999999999874

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=99.73  E-value=3e-17  Score=151.38  Aligned_cols=131  Identities=22%  Similarity=0.338  Sum_probs=108.8

Q ss_pred             CChHHHhcChHHHHHHHHH--hcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccc
Q psy799            2 DPVFEMIASPAVAVAFSER--VLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPA   78 (209)
Q Consensus         2 ls~~el~~S~avAv~~a~~--vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~A   78 (209)
                      ++++++.+++++..+.++.  .+|+. ++++.+.+.+++++++|+.+++.+|++|++||||++|++|+++|+|++||++|
T Consensus       254 ~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp~~~~~v~~~~~tP~~a  333 (445)
T PRK11357        254 MPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVS  333 (445)
T ss_pred             CCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCchHHHHHhCCCCCCCHHH
Confidence            4678888776655555555  36764 67888899999999999999999999999999999999999999999999999


Q ss_pred             hhcc-------------------------------------------------cc--hhHHHHHHHHHHHHHhhccccCc
Q psy799           79 VLFQ-------------------------------------------------VP--LVIPIFVLIMSIVLSLTPIVTKP  107 (209)
Q Consensus        79 ll~~-------------------------------------------------vp--liiPil~ll~~l~Ll~~~l~~~p  107 (209)
                      ++++                                                 +|  .++|+++++.|+++++.+++.+|
T Consensus       334 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~~~~~~  413 (445)
T PRK11357        334 IILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDDYKPLWRTPAFGLMTTLAIASSLILVASTFVWAP  413 (445)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCCCCcccCCchHHHHHHHHHHHHHHHHHHHcCc
Confidence            9886                                                 33  36899999999999988777888


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhhhh
Q psy799          108 APQFLIAVAFIVLGILVYIPFVYYQ  132 (209)
Q Consensus       108 ~~~~l~gl~~il~Gl~iY~~~v~~~  132 (209)
                      ......+++++++|+++|+++.+++
T Consensus       414 ~~~~~~~~~~~~~g~~~y~~~~~~~  438 (445)
T PRK11357        414 IPGLICAVIVIATGLPAYAFWAKRS  438 (445)
T ss_pred             HHHHHHHHHHHHHhhhHHhheechh
Confidence            3334568899999999998765544

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=99.68  E-value=4.9e-16  Score=144.86  Aligned_cols=132  Identities=20%  Similarity=0.311  Sum_probs=108.0

Q ss_pred             CChHHHhcChHH-HHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccch
Q psy799            2 DPVFEMIASPAV-AVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAV   79 (209)
Q Consensus         2 ls~~el~~S~av-Av~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~Al   79 (209)
                      ++++++.+++.+ ..+++++.+|++ +.++.++++++++|+.|+++++.||++|+|||||.+|++|+++|+ ++||++|+
T Consensus       257 ~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~~~~~v~~-~~tP~~Ai  335 (473)
T TIGR00905       257 LPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKIFGRVNK-NGAPSVAL  335 (473)
T ss_pred             cCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHhhCc-cCCCHHHH
Confidence            577888877776 667778888885 578999999999999999999999999999999999999999995 59999998


Q ss_pred             hcc----------------------------------------------c-------c--hhHHHHHHHHHHHHHhhccc
Q psy799           80 LFQ----------------------------------------------V-------P--LVIPIFVLIMSIVLSLTPIV  104 (209)
Q Consensus        80 l~~----------------------------------------------v-------p--liiPil~ll~~l~Ll~~~l~  104 (209)
                      +++                                              -       |  .++|++.++.|++++..   
T Consensus       336 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---  412 (473)
T TIGR00905       336 LLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTYPKIKNRKALIVGVIACVYSIWLLYA---  412 (473)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHHHHH---
Confidence            775                                              0       1  36677777777776654   


Q ss_pred             cCchhHHHHHHHHHHHHHHHHHhhhhhhcCCcch
Q psy799          105 TKPAPQFLIAVAFIVLGILVYIPFVYYQYRMPYL  138 (209)
Q Consensus       105 ~~p~~~~l~gl~~il~Gl~iY~~~v~~~~~p~~~  138 (209)
                      .++ .+..++++++++|+++|+.+.+.|+++.+-
T Consensus       413 ~~~-~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~  445 (473)
T TIGR00905       413 AGL-KYLLLGFILYAPGIIFYGRARKERGKHVFN  445 (473)
T ss_pred             hhH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            445 567789999999999999988777666543

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=99.64  E-value=2.1e-15  Score=140.39  Aligned_cols=129  Identities=14%  Similarity=0.188  Sum_probs=98.8

Q ss_pred             CChHHHhcChHH-HHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccch
Q psy799            2 DPVFEMIASPAV-AVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAV   79 (209)
Q Consensus         2 ls~~el~~S~av-Av~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~Al   79 (209)
                      +|.+|+.+++.+ ....+++.+|++ +.++.+++++|++|+.|+++++.||++|++||||++|++|+++| |++||++|+
T Consensus       253 ~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~f~k~~-~~~tP~~al  331 (468)
T TIGR03810       253 MTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKEN-ANGAPTNAL  331 (468)
T ss_pred             cCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-CCCCCHHHH
Confidence            567888765444 445667788886 58899999999999999999999999999999999999999999 789999998


Q ss_pred             hcc----------------------------------------------c--------chhHHHHHHHHHHHHHhhcccc
Q psy799           80 LFQ----------------------------------------------V--------PLVIPIFVLIMSIVLSLTPIVT  105 (209)
Q Consensus        80 l~~----------------------------------------------v--------pliiPil~ll~~l~Ll~~~l~~  105 (209)
                      +++                                              -        ..+++.+..+.|++++..   .
T Consensus       332 ~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~  408 (468)
T TIGR03810       332 WLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQERGRRKQLLIGLVALLYAVWLIYA---A  408 (468)
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHH---h
Confidence            875                                              0        013444555555555443   3


Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhhhhhcCC
Q psy799          106 KPAPQFLIAVAFIVLGILVYIPFVYYQYRM  135 (209)
Q Consensus       106 ~p~~~~l~gl~~il~Gl~iY~~~v~~~~~p  135 (209)
                      .+ ...+++.++++.|+|+|+...++|+++
T Consensus       409 ~~-~~~~~~~~~~~~g~~~y~~~~~~~~~~  437 (468)
T TIGR03810       409 GL-KYLLLSAILYAPGIYFYARARKEKGGP  437 (468)
T ss_pred             hH-HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            44 567788888999999998755544343

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10655 potE putrescine transporter; Provisional

Probab=99.63  E-value=3.7e-15  Score=137.12  Aligned_cols=125  Identities=22%  Similarity=0.202  Sum_probs=100.6

Q ss_pred             CChHHHhcChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799            2 DPVFEMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL   80 (209)
Q Consensus         2 ls~~el~~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All   80 (209)
                      +|.+|+.+++.+..+..++.+|++ ++++.++++++++++.|+++++.+|++|++||||++|++|+++| |++||++|++
T Consensus       248 ~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~v~-~~~tP~~all  326 (438)
T PRK10655        248 VPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKIFSRVT-KVDAPVQGML  326 (438)
T ss_pred             CCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHhhC-cCCCCHHHHH
Confidence            467888777776666777888885 68889999999999999999999999999999999999999999 7799999987


Q ss_pred             cc---------------------------------------------------------cchhHHHHHHHHHHHHHhhcc
Q psy799           81 FQ---------------------------------------------------------VPLVIPIFVLIMSIVLSLTPI  103 (209)
Q Consensus        81 ~~---------------------------------------------------------vpliiPil~ll~~l~Ll~~~l  103 (209)
                      ++                                                         .|.++|++..+.|++++.   
T Consensus       327 ~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  403 (438)
T PRK10655        327 IIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAKVANFIAFVGALYSFYALY---  403 (438)
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHH---
Confidence            64                                                         223566667777665544   


Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHhhhhh
Q psy799          104 VTKPAPQFLIAVAFIVLGILVYIPFVYY  131 (209)
Q Consensus       104 ~~~p~~~~l~gl~~il~Gl~iY~~~v~~  131 (209)
                       .+|.....++.++++.|+++|+++.++
T Consensus       404 -~~~~~~~~~~~~~~~~g~~~y~~~~~~  430 (438)
T PRK10655        404 -SSGEEAMLYGSIVTFLGWTLYGLISPR  430 (438)
T ss_pred             -HhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             456335677899999999999875443

>TIGR00909 2A0306 amino acid transporter

Probab=99.61  E-value=5.5e-15  Score=135.11  Aligned_cols=122  Identities=25%  Similarity=0.378  Sum_probs=100.2

Q ss_pred             CChHHHhcChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799            2 DPVFEMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL   80 (209)
Q Consensus         2 ls~~el~~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All   80 (209)
                      .+.+++.+++.+....+++..|++ ++++.+.++++++++.++++++.||++|++||||.+|++|+++|+|++||++|++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~  333 (429)
T TIGR00909       254 VPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSII  333 (429)
T ss_pred             cCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHH
Confidence            467788777766666667777775 6899999999999999999999999999999999999999999999999999988


Q ss_pred             cc--------------------------------------------------cch--hHHHHHHHHHHHHHhhccccCch
Q psy799           81 FQ--------------------------------------------------VPL--VIPIFVLIMSIVLSLTPIVTKPA  108 (209)
Q Consensus        81 ~~--------------------------------------------------vpl--iiPil~ll~~l~Ll~~~l~~~p~  108 (209)
                      ++                                                  .|.  +.+++.++.|++++..   ..+ 
T Consensus       334 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-  409 (429)
T TIGR00909       334 IFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCPLVPVLPVLVVSYCIYLLLN---LGP-  409 (429)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcchHHHHHHHHHHHHHHHH---ccH-
Confidence            76                                                  221  4566666667776654   455 


Q ss_pred             hHHHHHHHHHHHHHHHHHh
Q psy799          109 PQFLIAVAFIVLGILVYIP  127 (209)
Q Consensus       109 ~~~l~gl~~il~Gl~iY~~  127 (209)
                      .+..++++|.++|+++|.+
T Consensus       410 ~~~~~~~~~~~~g~~~y~~  428 (429)
T TIGR00909       410 GTTVWFLVWMLLGSVFYFI  428 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            6788899999999999965

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=99.60  E-value=9.6e-15  Score=139.80  Aligned_cols=81  Identities=25%  Similarity=0.396  Sum_probs=65.0

Q ss_pred             CChHHHhcChHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhc
Q psy799            2 DPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLF   81 (209)
Q Consensus         2 ls~~el~~S~avAv~~a~~vlG~~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~   81 (209)
                      +|.+++..+++.+..+.....+..+.++.+++.+++++++++.+++.+|++|+|||||.+|++|+++|+|++||+.|+++
T Consensus       290 vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~  369 (557)
T TIGR00906       290 MPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVV  369 (557)
T ss_pred             ccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHH
Confidence            45566655455554433222222467899999999999999999999999999999999999999999999999999887


Q ss_pred             c
Q psy799           82 Q   82 (209)
Q Consensus        82 ~   82 (209)
                      .
T Consensus       370 ~  370 (557)
T TIGR00906       370 S  370 (557)
T ss_pred             H
Confidence            6

>TIGR00908 2A0305 ethanolamine permease

Probab=99.59  E-value=1.3e-14  Score=133.60  Aligned_cols=128  Identities=21%  Similarity=0.283  Sum_probs=101.8

Q ss_pred             CChHHHhcChHHHHHHHHHhcCch---hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccc
Q psy799            2 DPVFEMIASPAVAVAFSERVLGPF---QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPA   78 (209)
Q Consensus         2 ls~~el~~S~avAv~~a~~vlG~~---a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~A   78 (209)
                      .+++++.+++.+..+..+..+|+.   ..++.+...++++++.|+.+++.+|++|++||||.+|++|+++| |++||+.|
T Consensus       250 ~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~A  328 (442)
T TIGR00908       250 ADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPESLSKVN-RKKAPVLA  328 (442)
T ss_pred             CCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhC-CCCCcHHH
Confidence            356778776666667777887752   35667777788899999999999999999999999999999999 99999999


Q ss_pred             hhcc--------------------------------------------------cc--hhHHHHHHHHHHHHHhhccccC
Q psy799           79 VLFQ--------------------------------------------------VP--LVIPIFVLIMSIVLSLTPIVTK  106 (209)
Q Consensus        79 ll~~--------------------------------------------------vp--liiPil~ll~~l~Ll~~~l~~~  106 (209)
                      ++++                                                  .|  .+.|++.++.|+++++..++.+
T Consensus       329 il~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~~rp~~~p~~~~~~~l~~~~~~~~l~~~~~~~  408 (442)
T TIGR00908       329 IVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTPGGILTPGVALVLACVALVTGFYVD  408 (442)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCCCcchHHHHHHHHHHHHHHHHHHcC
Confidence            9876                                                  33  4789999999999988877777


Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhhh
Q psy799          107 PAPQFLIAVAFIVLGILVYIPFVYY  131 (209)
Q Consensus       107 p~~~~l~gl~~il~Gl~iY~~~v~~  131 (209)
                      | .....++.+.+.+..+|+++.++
T Consensus       409 ~-~~~~~~~~~~~~~~~~~~l~~~~  432 (442)
T TIGR00908       409 P-RVVVGAVAIFVVLIGYYFLYSRH  432 (442)
T ss_pred             h-HHHHHHHHHHHHHHHHHHhhhhc
Confidence            7 34444566666667777776443

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=99.59  E-value=1.6e-14  Score=133.49  Aligned_cols=125  Identities=16%  Similarity=0.152  Sum_probs=103.1

Q ss_pred             CChHHHhcChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799            2 DPVFEMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL   80 (209)
Q Consensus         2 ls~~el~~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All   80 (209)
                      +|.+|+..++.+..+.+++.+|++ +.++.+.+++++++++|+.++..+|+.|++||||.+|++|+++| |++||++|++
T Consensus       250 ~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~lP~~~~~v~-~~~tP~~Ai~  328 (445)
T PRK10644        250 IPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLL  328 (445)
T ss_pred             CCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCCHHHHH
Confidence            567788767777777788888885 57888899999999999999999999999999999999999999 5799999987


Q ss_pred             cc-----------------------------------------------------cc--hhHHHHHHHHHHHHHhhcccc
Q psy799           81 FQ-----------------------------------------------------VP--LVIPIFVLIMSIVLSLTPIVT  105 (209)
Q Consensus        81 ~~-----------------------------------------------------vp--liiPil~ll~~l~Ll~~~l~~  105 (209)
                      ++                                                     .|  .++|+++++.|++++..   .
T Consensus       329 ~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~  405 (445)
T PRK10644        329 IVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTLIAFVYCIWAVVG---S  405 (445)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccchhHHHHHHHHHHHHHHHH---h
Confidence            76                                                     11  36888999999988864   3


Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhhhh
Q psy799          106 KPAPQFLIAVAFIVLGILVYIPFVYY  131 (209)
Q Consensus       106 ~p~~~~l~gl~~il~Gl~iY~~~v~~  131 (209)
                      ++ .+..++.++++.|+++|+...++
T Consensus       406 ~~-~~~~~~~~~~~~~~~~y~~~~~~  430 (445)
T PRK10644        406 GA-KEVMWSFVTLMVITAFYALNYNR  430 (445)
T ss_pred             hH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence            44 56778888899999999765443

>PRK11387 S-methylmethionine transporter; Provisional

Probab=99.54  E-value=4e-14  Score=131.97  Aligned_cols=126  Identities=18%  Similarity=0.253  Sum_probs=95.0

Q ss_pred             ChHHHhcChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhc
Q psy799            3 PVFEMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLF   81 (209)
Q Consensus         3 s~~el~~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~   81 (209)
                      |.+|+..++.+.++.+++..+++ +.++.++++++++++.|+.+++.||++|+|||||++|++|+++| |+++|++|+++
T Consensus       266 p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~  344 (471)
T PRK11387        266 PMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLPACFARLT-KRGIPLTALSV  344 (471)
T ss_pred             CccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcCHHHHHhC-CCCCcHHHHHH
Confidence            44565544455556667766664 67899999999999999999999999999999999999999999 67999999876


Q ss_pred             c-------------------------------------------------------------cch--hHHHHHHHHHHHH
Q psy799           82 Q-------------------------------------------------------------VPL--VIPIFVLIMSIVL   98 (209)
Q Consensus        82 ~-------------------------------------------------------------vpl--iiPil~ll~~l~L   98 (209)
                      .                                                             +|.  ++|+++++.|+++
T Consensus       345 ~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  424 (471)
T PRK11387        345 SMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFRRRHLRDGKALSELAYRAPWYPLTPILGFVLCLLA  424 (471)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCccHHHHHHHHHHHHH
Confidence            5                                                             011  5788888888777


Q ss_pred             HhhccccCch-hHHHHHHHHHHHHHHHHHhhh
Q psy799           99 SLTPIVTKPA-PQFLIAVAFIVLGILVYIPFV  129 (209)
Q Consensus        99 l~~~l~~~p~-~~~l~gl~~il~Gl~iY~~~v  129 (209)
                      ++...+..+. .....++++++.|+++|+++.
T Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (471)
T PRK11387        425 CVGLAFDPSQRIALWCGIPFVALCYGAYYLTQ  456 (471)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7653332221 224567778888888888753

>PRK15049 L-asparagine permease; Provisional

Probab=99.45  E-value=8.1e-13  Score=124.72  Aligned_cols=80  Identities=16%  Similarity=0.154  Sum_probs=67.6

Q ss_pred             CChHHHhcChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799            2 DPVFEMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL   80 (209)
Q Consensus         2 ls~~el~~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All   80 (209)
                      +|++++..++.+.++..++..+++ +.++.+.++++++++.|+.+++.||++|++||||++|++|+++| |+++|.+|++
T Consensus       279 ~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail  357 (499)
T PRK15049        279 LPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMS-RQHVPYAGIL  357 (499)
T ss_pred             cchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhC-CCCCCHHHHH
Confidence            456677655555556666665554 68899999999999999999999999999999999999999999 8899999997


Q ss_pred             cc
Q psy799           81 FQ   82 (209)
Q Consensus        81 ~~   82 (209)
                      ++
T Consensus       358 ~~  359 (499)
T PRK15049        358 AT  359 (499)
T ss_pred             HH
Confidence            65

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=99.45  E-value=6.7e-13  Score=123.26  Aligned_cols=118  Identities=16%  Similarity=0.256  Sum_probs=94.2

Q ss_pred             HHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc-------------
Q psy799           17 FSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ-------------   82 (209)
Q Consensus        17 ~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~-------------   82 (209)
                      ..+...+++ +.++.+++.++++++.|+.+++.||++|++||||++|++|+++| |+++|++|++++             
T Consensus       256 ~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~  334 (446)
T PRK10197        256 VLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYY  334 (446)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            344444454 57899999999999999999999999999999999999999999 889999998876             


Q ss_pred             ---------------------------------------------cc--hhHHHHHHHHHHHHHhhcccc-CchhHHHHH
Q psy799           83 ---------------------------------------------VP--LVIPIFVLIMSIVLSLTPIVT-KPAPQFLIA  114 (209)
Q Consensus        83 ---------------------------------------------vp--liiPil~ll~~l~Ll~~~l~~-~p~~~~l~g  114 (209)
                                                                   .|  .+.|+++++.|+++++..++. ++ ....++
T Consensus       335 ~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~  413 (446)
T PRK10197        335 APAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQ-QLEVIS  413 (446)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCcchHHHHHHHHHHHHHHHHHHCcch-HHHHHH
Confidence                                                         22  268888888887777664443 34 556678


Q ss_pred             HHHHHHHHHHHH-hhhhhhcCCc
Q psy799          115 VAFIVLGILVYI-PFVYYQYRMP  136 (209)
Q Consensus       115 l~~il~Gl~iY~-~~v~~~~~p~  136 (209)
                      ++++++|++.|+ +..||++.-.
T Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~  436 (446)
T PRK10197        414 TGLLAIGIICTVPIMARWKKLVL  436 (446)
T ss_pred             HHHHHHHHHhhhHHHhhhccccc
Confidence            889999999998 6666665443

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=99.45  E-value=1e-12  Score=121.37  Aligned_cols=80  Identities=21%  Similarity=0.172  Sum_probs=70.8

Q ss_pred             CChHHHhcChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799            2 DPVFEMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL   80 (209)
Q Consensus         2 ls~~el~~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All   80 (209)
                      +|.+|+.+++.+.++.+++.+|++ +.++.+++++++++++|++++..+|..+++||||.+|++|+++| |+++|..|++
T Consensus       246 ~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP~~f~k~n-k~g~P~~Al~  324 (435)
T PRK10435        246 FPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPKVYGEVD-KNGIPKKGLL  324 (435)
T ss_pred             CCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCCHHHHH
Confidence            577888777777667778888876 57888889999999999999999999999999999999999999 8899999987


Q ss_pred             cc
Q psy799           81 FQ   82 (209)
Q Consensus        81 ~~   82 (209)
                      ++
T Consensus       325 ~~  326 (435)
T PRK10435        325 LA  326 (435)
T ss_pred             HH
Confidence            64

>PRK10746 putative transport protein YifK; Provisional

Probab=99.44  E-value=7.6e-13  Score=123.58  Aligned_cols=80  Identities=18%  Similarity=0.125  Sum_probs=64.5

Q ss_pred             CChHHHhcChHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799            2 DPVFEMIASPAVAVAFSERVLGP-FQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL   80 (209)
Q Consensus         2 ls~~el~~S~avAv~~a~~vlG~-~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All   80 (209)
                      +|++|+..++.+.++..++...+ .+.++.+.+.++++++.|+.+++.||++|++||||++|++|+++| |+++|++|++
T Consensus       259 ~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al~  337 (461)
T PRK10746        259 FPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVS-RHGVPVAGVA  337 (461)
T ss_pred             eCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhC-CCCCcHHHHH
Confidence            45666664444444444444333 467899999999999999999999999999999999999999999 8899999987


Q ss_pred             cc
Q psy799           81 FQ   82 (209)
Q Consensus        81 ~~   82 (209)
                      +.
T Consensus       338 ~~  339 (461)
T PRK10746        338 VS  339 (461)
T ss_pred             HH
Confidence            54

>PRK10836 lysine transporter; Provisional

Probab=99.43  E-value=6.4e-13  Score=124.57  Aligned_cols=102  Identities=17%  Similarity=0.225  Sum_probs=83.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc----------------------
Q psy799           25 FQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ----------------------   82 (209)
Q Consensus        25 ~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~----------------------   82 (209)
                      .+.++.+.++++++++.|+.+++.||++|++||||++|++|+++| |++||++|++++                      
T Consensus       296 ~~~ii~~~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l  374 (489)
T PRK10836        296 AAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWL  374 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            367899999999999999999999999999999999999999999 779999998876                      


Q ss_pred             ---------------------------------------cc--hhHHHHHHHHHHHHHhhccccCch--hHHHHHHHHHH
Q psy799           83 ---------------------------------------VP--LVIPIFVLIMSIVLSLTPIVTKPA--PQFLIAVAFIV  119 (209)
Q Consensus        83 ---------------------------------------vp--liiPil~ll~~l~Ll~~~l~~~p~--~~~l~gl~~il  119 (209)
                                                             +|  ++.|+++++.|+++++...+.++.  .....+++..+
T Consensus       375 ~~~~~~~~~~~y~~~~~a~l~~R~~~~~~~~~~~~~p~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (489)
T PRK10836        375 LNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDLNDLPYRSGFFPLGPIFAFVLCLIITLGQNYEAFLKDTIDWGGVAATY  454 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHH
Confidence                                                   12  267888888888888764444320  11456778888


Q ss_pred             HHHHHHHh
Q psy799          120 LGILVYIP  127 (209)
Q Consensus       120 ~Gl~iY~~  127 (209)
                      +|+|+|.+
T Consensus       455 ~g~~~~~~  462 (489)
T PRK10836        455 IGIPLFLI  462 (489)
T ss_pred             HHHHHHHH
Confidence            99998874

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=99.42  E-value=1.4e-12  Score=120.59  Aligned_cols=67  Identities=27%  Similarity=0.387  Sum_probs=58.1

Q ss_pred             HHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc
Q psy799           15 VAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ   82 (209)
Q Consensus        15 v~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~   82 (209)
                      +...+...+++ +.++.+.++++++++.|+.+++.||++|++||||++|++|+++| |+++|.+|++++
T Consensus       274 ~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~v~-~~~~P~~Ail~~  341 (452)
T TIGR01773       274 VAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDAPRVFMKLN-KKGVPVQAVLAS  341 (452)
T ss_pred             HHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHH
Confidence            33445444444 57889999999999999999999999999999999999999999 789999999876

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK11021 putative transporter; Provisional

Probab=99.41  E-value=2e-12  Score=118.29  Aligned_cols=76  Identities=18%  Similarity=0.206  Sum_probs=62.9

Q ss_pred             HHhcChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc
Q psy799            6 EMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ   82 (209)
Q Consensus         6 el~~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~   82 (209)
                      |..++++......++.+|.. .+++.+.+.+++++++|+++++.||++|++||||.+|++|+++| |++||.+|++++
T Consensus       240 ~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~-~~~tP~~ail~~  316 (410)
T PRK11021        240 DKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLS-ARGVPVNALNAV  316 (410)
T ss_pred             chhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhc-cCCCcHHHHHHH
Confidence            33333333444556778875 57888889999999999999999999999999999999999999 779999998765

>PRK10580 proY putative proline-specific permease; Provisional

Probab=99.37  E-value=4.6e-12  Score=117.63  Aligned_cols=78  Identities=24%  Similarity=0.257  Sum_probs=62.1

Q ss_pred             ChHHHhcChHHHHHHHHHhcCc-h-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799            3 PVFEMIASPAVAVAFSERVLGP-F-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL   80 (209)
Q Consensus         3 s~~el~~S~avAv~~a~~vlG~-~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All   80 (209)
                      |++|+..++.+.+...+. .|. + +.++.+.+.+++++++|+.+++.||++|++||||.+|++|+++| |++||++|++
T Consensus       259 p~~~i~~~~~p~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~kv~-~~~~P~~Ai~  336 (457)
T PRK10580        259 PWNQVGTNGSPFVLTFQH-MGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTS-RRGIPWVTVL  336 (457)
T ss_pred             ccCCCCccCChHHHHHHH-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHH
Confidence            556665443333344444 343 3 57888888999999999999999999999999999999999999 6799999987


Q ss_pred             cc
Q psy799           81 FQ   82 (209)
Q Consensus        81 ~~   82 (209)
                      ++
T Consensus       337 ~~  338 (457)
T PRK10580        337 VM  338 (457)
T ss_pred             HH
Confidence            65

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=99.35  E-value=6.1e-12  Score=117.45  Aligned_cols=80  Identities=23%  Similarity=0.274  Sum_probs=66.5

Q ss_pred             CChHHHhcChHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799            2 DPVFEMIASPAVAVAFSERVLGP-FQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL   80 (209)
Q Consensus         2 ls~~el~~S~avAv~~a~~vlG~-~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All   80 (209)
                      .|++++.+++.+..+..+...++ .+.++.+.++++++++.|+.+++.||++|++||||++|++|+++| |++||+.|++
T Consensus       270 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~  348 (469)
T PRK11049        270 TPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLT  348 (469)
T ss_pred             cCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHH
Confidence            35677766655555555554455 467899999999999999999999999999999999999999999 5699999987


Q ss_pred             cc
Q psy799           81 FQ   82 (209)
Q Consensus        81 ~~   82 (209)
                      ++
T Consensus       349 ~~  350 (469)
T PRK11049        349 FS  350 (469)
T ss_pred             HH
Confidence            75

>TIGR00930 2a30 K-Cl cotransporter

Probab=99.32  E-value=2.4e-11  Score=123.05  Aligned_cols=108  Identities=18%  Similarity=0.210  Sum_probs=86.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCch--hHhhcccCCCCccccchhcc--------------------
Q psy799           25 FQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHML--QAFSFVHVKRLTPAPAVLFQ--------------------   82 (209)
Q Consensus        25 ~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP--~~fs~ih~k~~TP~~All~~--------------------   82 (209)
                      +++++.+++.++++|+.|+++++++|++|++||||++|  ++|+++|+|+++|+.|++++                    
T Consensus       386 ~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~li  465 (953)
T TIGR00930       386 FPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPII  465 (953)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            56899999999999999999999999999999999999  89999999999999999887                    


Q ss_pred             --------------------------------cchhHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHhhhh
Q psy799           83 --------------------------------VPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVY  130 (209)
Q Consensus        83 --------------------------------vpliiPil~ll~~l~Ll~~~l~~~p~~~~l~gl~~il~Gl~iY~~~v~  130 (209)
                                                      ...++|+++++.|++++..       ..+.+.++.+++++.+|+++.|
T Consensus       466 s~~fLl~Y~lvnla~~~l~~~~~p~~RP~fk~~~~~~sllG~l~c~~lmf~-------i~w~~ali~~~i~~~ly~~~~~  538 (953)
T TIGR00930       466 SNFFLASYALINFSCFHASLLRSPGWRPRFKYYHWWLSLLGASLCCAIMFL-------ISWWAALVAMVIALFLYKYVTY  538 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCccccchHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhc
Confidence                                            0135677777777766654       2234445556667777877767


Q ss_pred             hhcCCcchh
Q psy799          131 YQYRMPYLD  139 (209)
Q Consensus       131 ~~~~p~~~~  139 (209)
                      ++....|.+
T Consensus       539 ~~~~~~wg~  547 (953)
T TIGR00930       539 KKPDVNWGS  547 (953)
T ss_pred             cCCCCCcch
Confidence            666667774

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=99.32  E-value=1.6e-11  Score=114.17  Aligned_cols=57  Identities=23%  Similarity=0.386  Sum_probs=53.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc
Q psy799           25 FQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ   82 (209)
Q Consensus        25 ~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~   82 (209)
                      .+.++.++++++++++.|+.+++.||++|++||||.+|++|+++| |++||.+|++++
T Consensus       289 ~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~  345 (478)
T TIGR00913       289 LPHIFNAVILISVLSAANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYVAVIVS  345 (478)
T ss_pred             HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCcccHHHHhhC-CCCCCHHHHHHH
Confidence            367899999999999999999999999999999999999999999 789999998876

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=99.27  E-value=4.3e-11  Score=111.64  Aligned_cols=79  Identities=22%  Similarity=0.324  Sum_probs=65.1

Q ss_pred             hHHHhcChH--HHHHHHHHhcCc-h-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCch--hHhhcccCCCCcccc
Q psy799            4 VFEMIASPA--VAVAFSERVLGP-F-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHML--QAFSFVHVKRLTPAP   77 (209)
Q Consensus         4 ~~el~~S~a--vAv~~a~~vlG~-~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP--~~fs~ih~k~~TP~~   77 (209)
                      ++++.+++.  +.++.....+|. + +.++.+.++++.+++.|+.+++.||++|++||||.+|  ++|+++|+|+++|.+
T Consensus       279 ~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~  358 (482)
T TIGR00907       279 IDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLN  358 (482)
T ss_pred             HHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHH
Confidence            455655432  344455566776 4 4578888999999999999999999999999999999  999999999999999


Q ss_pred             chhcc
Q psy799           78 AVLFQ   82 (209)
Q Consensus        78 All~~   82 (209)
                      |++++
T Consensus       359 ai~~~  363 (482)
T TIGR00907       359 AVWLS  363 (482)
T ss_pred             HHHHH
Confidence            99887

>PRK10249 phenylalanine transporter; Provisional

Probab=99.26  E-value=3.7e-11  Score=111.96  Aligned_cols=79  Identities=13%  Similarity=0.201  Sum_probs=64.8

Q ss_pred             ChHHHhcChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhc
Q psy799            3 PVFEMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLF   81 (209)
Q Consensus         3 s~~el~~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~   81 (209)
                      |.+|+..++.+.+...++..+++ +.++.+.+.++++++.|+.+++.||++|++||||.+|++|+++| |+++|++|+++
T Consensus       269 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~~P~~All~  347 (458)
T PRK10249        269 PWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRVS-RRGVPINSLML  347 (458)
T ss_pred             cccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHhC-CCCCCHHHHHH
Confidence            44555444344445555655654 67888899999999999999999999999999999999999999 78999999987


Q ss_pred             c
Q psy799           82 Q   82 (209)
Q Consensus        82 ~   82 (209)
                      +
T Consensus       348 ~  348 (458)
T PRK10249        348 S  348 (458)
T ss_pred             H
Confidence            6

>PRK10238 aromatic amino acid transporter; Provisional

Probab=99.26  E-value=4.8e-11  Score=111.18  Aligned_cols=80  Identities=19%  Similarity=0.234  Sum_probs=65.2

Q ss_pred             CChHHHhcChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799            2 DPVFEMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL   80 (209)
Q Consensus         2 ls~~el~~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All   80 (209)
                      +|++++.+++.+.+...+..-+++ +.++.+.+.++.+++.|+.+++.||++|++||||.+|++|+++| |+++|++|++
T Consensus       259 ~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~-~~~~P~~Ail  337 (456)
T PRK10238        259 MPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVD-KRGVPVNTIL  337 (456)
T ss_pred             cChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCcHHHHH
Confidence            456677655444444444443343 67889999999999999999999999999999999999999999 6799999998


Q ss_pred             cc
Q psy799           81 FQ   82 (209)
Q Consensus        81 ~~   82 (209)
                      ++
T Consensus       338 ~~  339 (456)
T PRK10238        338 VS  339 (456)
T ss_pred             HH
Confidence            87

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=99.22  E-value=2.2e-10  Score=108.48  Aligned_cols=80  Identities=23%  Similarity=0.264  Sum_probs=61.1

Q ss_pred             CChHHHhcChHHHHHHH---HHhcCch---hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCcc
Q psy799            2 DPVFEMIASPAVAVAFS---ERVLGPF---QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTP   75 (209)
Q Consensus         2 ls~~el~~S~avAv~~a---~~vlG~~---a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP   75 (209)
                      +|.+|+..++.+...+.   ....++.   ..++.+.++++.+|++|+++++.||++|++||||.+|++|+++| |+++|
T Consensus       253 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR~l~~~ardg~lP~~~~k~n-k~~~P  331 (507)
T TIGR00910       253 IPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGLLPAAFAKMN-KHEVP  331 (507)
T ss_pred             cChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcCHHHHhhC-cCCCc
Confidence            35666654444333332   2222222   35677888888999999999999999999999999999999999 88999


Q ss_pred             ccchhcc
Q psy799           76 APAVLFQ   82 (209)
Q Consensus        76 ~~All~~   82 (209)
                      .+|++++
T Consensus       332 ~~a~~~~  338 (507)
T TIGR00910       332 VPLVIIQ  338 (507)
T ss_pred             HHHHHHH
Confidence            9999887

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=99.19  E-value=3e-10  Score=103.36  Aligned_cols=80  Identities=30%  Similarity=0.434  Sum_probs=68.4

Q ss_pred             CChHHHhcChH---HHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCcccc
Q psy799            2 DPVFEMIASPA---VAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAP   77 (209)
Q Consensus         2 ls~~el~~S~a---vAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~   77 (209)
                      +|++++..+++   +...++++..|++ .+++.++++++++++.|+.+++.+|++|++||||++|++|+++| |+++|+.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~-k~~~P~~  323 (426)
T PF13520_consen  245 LPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPKWFAKVN-KFGTPYN  323 (426)
T ss_dssp             STHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSGGGGTTS-SSSSCHH
T ss_pred             ccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccccccchhhhhhhcc-ccCCcee
Confidence            46667765433   3556677777665 68999999999999999999999999999999999999999999 9999999


Q ss_pred             chhcc
Q psy799           78 AVLFQ   82 (209)
Q Consensus        78 All~~   82 (209)
                      |+++.
T Consensus       324 a~~~~  328 (426)
T PF13520_consen  324 AIILV  328 (426)
T ss_dssp             HHHHH
T ss_pred             eehhh
Confidence            99864

...

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=99.06  E-value=2.5e-09  Score=99.85  Aligned_cols=56  Identities=14%  Similarity=0.183  Sum_probs=51.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc
Q psy799           26 QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ   82 (209)
Q Consensus        26 a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~   82 (209)
                      +.++.+.+.+++++++|+++.+.||++|++||||.+|++|+++| |+++|++|++++
T Consensus       281 ~~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~lP~~~~kv~-k~~~P~~a~~~~  336 (474)
T TIGR03813       281 GPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLPTFFQKTN-KNGMPIHIMFVQ  336 (474)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHhccC-CCCCcHHHHHHH
Confidence            46778888899999999999999999999999999999999999 889999998765

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=99.06  E-value=7.2e-10  Score=105.70  Aligned_cols=57  Identities=21%  Similarity=0.313  Sum_probs=54.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc
Q psy799           25 FQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ   82 (209)
Q Consensus        25 ~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~   82 (209)
                      .+.++.+.+++|++++.|+.+|++||++|+||+||+.|++|++++ |++.|+.|++++
T Consensus       325 ~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~-r~GvP~~al~vt  381 (541)
T COG0833         325 AASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVD-RRGVPLVALLVT  381 (541)
T ss_pred             chHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhC-CCCCchHHHHHH
Confidence            578999999999999999999999999999999999999999999 779999999987

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=98.95  E-value=4e-10  Score=105.61  Aligned_cols=80  Identities=20%  Similarity=0.204  Sum_probs=66.3

Q ss_pred             CChHHHhcChHHHHHHHHH-hcCchhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799            2 DPVFEMIASPAVAVAFSER-VLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL   80 (209)
Q Consensus         2 ls~~el~~S~avAv~~a~~-vlG~~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All   80 (209)
                      +|++++.+++.+.++..++ ..+..+.++++.+..+.+|++|+.+|+.||++|.+|+||+.|+.|++++ |+++|.+|++
T Consensus       262 ~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~kls-k~gVP~~ai~  340 (462)
T COG1113         262 YPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLS-KRGVPVNAIL  340 (462)
T ss_pred             ccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhcc-ccCCCHHHHH
Confidence            4666665544444444433 3444578999999999999999999999999999999999999999999 8899999999


Q ss_pred             cc
Q psy799           81 FQ   82 (209)
Q Consensus        81 ~~   82 (209)
                      ++
T Consensus       341 ~s  342 (462)
T COG1113         341 LS  342 (462)
T ss_pred             HH
Confidence            87

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=98.91  E-value=1.5e-08  Score=94.83  Aligned_cols=64  Identities=25%  Similarity=0.424  Sum_probs=55.3

Q ss_pred             HHhcCc-hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchh--HhhcccCCCCccccchhcc
Q psy799           19 ERVLGP-FQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQ--AFSFVHVKRLTPAPAVLFQ   82 (209)
Q Consensus        19 ~~vlG~-~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~--~fs~ih~k~~TP~~All~~   82 (209)
                      .+.+|. ++.++...++++.+++.++.+++.||++|++||||.+|+  +|+++|+|++||.+|+++.
T Consensus       290 ~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~  356 (475)
T TIGR03428       290 SAVLDSPWGTVLLVDVAIAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVI  356 (475)
T ss_pred             HHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHH
Confidence            345564 456666777889999999999999999999999999995  8999999999999998864

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=98.90  E-value=2.1e-08  Score=91.61  Aligned_cols=70  Identities=26%  Similarity=0.312  Sum_probs=62.1

Q ss_pred             HHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc
Q psy799           13 VAVAFSERVLGP-FQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ   82 (209)
Q Consensus        13 vAv~~a~~vlG~-~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~   82 (209)
                      +..+.+....|. .+.++.+.+.++++++.+++..+.+|+.|++||||++|+.|+++|+|+++|..|+++.
T Consensus       273 p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~  343 (466)
T COG0531         273 PLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILT  343 (466)
T ss_pred             cHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHH
Confidence            334555666664 4789999999999999999999999999999999999999999999999999999876

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.83  E-value=1.2e-09  Score=101.86  Aligned_cols=69  Identities=29%  Similarity=0.466  Sum_probs=59.9

Q ss_pred             HHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc
Q psy799           14 AVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ   82 (209)
Q Consensus        14 Av~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~   82 (209)
                      ..+..+...+++ ..++.+++.+|++++.|+.++++||++|+|||||.+|+.+.+.|+|+++|+.|++++
T Consensus       276 ~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~  345 (478)
T PF00324_consen  276 FVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVS  345 (478)
T ss_pred             hhhhhhhcccccccceecccchhhhhhhhhhhhcccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeee
Confidence            344555555554 689999999999999999999999999999999999977777888999999999887

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>KOG1286|consensus

Probab=98.81  E-value=1.7e-08  Score=97.26  Aligned_cols=55  Identities=25%  Similarity=0.370  Sum_probs=52.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc
Q psy799           27 FIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ   82 (209)
Q Consensus        27 ~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~   82 (209)
                      .++++++.+++.+++|+.+|++||.+|+|||||++|++|+++|++ ++|+.|+++.
T Consensus       322 ~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~  376 (554)
T KOG1286|consen  322 HIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVS  376 (554)
T ss_pred             hhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHH
Confidence            499999999999999999999999999999999999999999966 9999999886

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=98.71  E-value=1.1e-07  Score=89.41  Aligned_cols=55  Identities=18%  Similarity=0.206  Sum_probs=51.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhcc
Q psy799           27 FIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLFQ   82 (209)
Q Consensus        27 ~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~~   82 (209)
                      .++.+...++++++.|+++++.+|.++.++|||++|++|+++| |+++|.+|++++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~  372 (496)
T PRK15238        318 RITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAMWLQ  372 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHHHHH
Confidence            4677888999999999999999999999999999999999999 899999999876

>KOG1289|consensus

Probab=98.51  E-value=1.5e-07  Score=90.11  Aligned_cols=78  Identities=23%  Similarity=0.261  Sum_probs=64.8

Q ss_pred             HHHhcCh--HHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCch--hHhhcccCCCCccccch
Q psy799            5 FEMIASP--AVAVAFSERVLGP-FQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHML--QAFSFVHVKRLTPAPAV   79 (209)
Q Consensus         5 ~el~~S~--avAv~~a~~vlG~-~a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP--~~fs~ih~k~~TP~~Al   79 (209)
                      +.+.+|+  .+.+.+..+.+|. .+..+....+++.|-+-.+.+.++||+.|+-||||-||  ++++++++++++|.+|+
T Consensus       316 ~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv  395 (550)
T KOG1289|consen  316 DAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAV  395 (550)
T ss_pred             HHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHH
Confidence            4445544  6777777888887 45566777778888888899999999999999999999  78999999899999999


Q ss_pred             hcc
Q psy799           80 LFQ   82 (209)
Q Consensus        80 l~~   82 (209)
                      ++.
T Consensus       396 ~l~  398 (550)
T KOG1289|consen  396 LLS  398 (550)
T ss_pred             HHH
Confidence            876

>KOG2082|consensus

Probab=97.74  E-value=8.7e-05  Score=73.78  Aligned_cols=56  Identities=23%  Similarity=0.367  Sum_probs=51.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCch--hHhhcccCCCCccccchhcc
Q psy799           26 QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHML--QAFSFVHVKRLTPAPAVLFQ   82 (209)
Q Consensus        26 a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP--~~fs~ih~k~~TP~~All~~   82 (209)
                      .|++.++..+|++|+.+-.+-+++|+++|.|||+.+|  +.|++.. +++-|..|++++
T Consensus       496 PwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT  553 (1075)
T KOG2082|consen  496 PWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLT  553 (1075)
T ss_pred             ceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHH
Confidence            3788999999999999999999999999999999999  6888766 778999999987

>PF13906 AA_permease_C: C-terminus of AA_permease

Probab=97.60  E-value=0.00014  Score=49.21  Aligned_cols=45  Identities=16%  Similarity=0.451  Sum_probs=38.4

Q ss_pred             cchhHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHhhhhhh
Q psy799           83 VPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILVYIPFVYYQ  132 (209)
Q Consensus        83 vpliiPil~ll~~l~Ll~~~l~~~p~~~~l~gl~~il~Gl~iY~~~v~~~  132 (209)
                      +| ++|.+.++++++|+..   -+. .+++...+|+++|+++|+.+.+++
T Consensus         6 vP-~~P~~si~~ni~Lm~~---L~~-~twirf~iWl~iGl~iYf~YG~~h   50 (51)
T PF13906_consen    6 VP-FLPALSILINIYLMAQ---LSA-LTWIRFGIWLAIGLVIYFGYGIRH   50 (51)
T ss_pred             cc-HHHHHHHHHHHHHHHH---hhH-hHHHHHHHHHHHHHHHHHheeeec
Confidence            45 8999999999999995   333 678888999999999999988765

>KOG1288|consensus

Probab=95.64  E-value=0.074  Score=53.21  Aligned_cols=57  Identities=18%  Similarity=0.125  Sum_probs=47.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchh--HhhcccCCCCccccchhcc
Q psy799           26 QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQ--AFSFVHVKRLTPAPAVLFQ   82 (209)
Q Consensus        26 a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~--~fs~ih~k~~TP~~All~~   82 (209)
                      -+++-+++.-+.+.+-.+.++++||++.|+|||..+|-  .|++.....+.|+.|+.++
T Consensus       372 p~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vt  430 (945)
T KOG1288|consen  372 PPFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVT  430 (945)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHH
Confidence            35566666666777888889999999999999999995  5677777789999999886

>TIGR00837 araaP aromatic amino acid transport protein

Probab=95.38  E-value=0.34  Score=43.78  Aligned_cols=71  Identities=20%  Similarity=0.139  Sum_probs=45.3

Q ss_pred             CChHHHhcCh------HHHHHHHHHhcCc-h-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCC
Q psy799            2 DPVFEMIASP------AVAVAFSERVLGP-F-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRL   73 (209)
Q Consensus         2 ls~~el~~S~------avAv~~a~~vlG~-~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~   73 (209)
                      +|++|+.++.      .......+..+|. + +.++.++..+++.++.+++.++.++.         +++.+++.|++++
T Consensus       237 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~---------l~~~~~~~~~~~~  307 (381)
T TIGR00837       237 LPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDY---------LADLFKFDDSKKG  307 (381)
T ss_pred             CCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhCCCcccCC
Confidence            5677776321      2223445555665 3 57899999999999999999888843         4555665554433


Q ss_pred             ccccchhcc
Q psy799           74 TPAPAVLFQ   82 (209)
Q Consensus        74 TP~~All~~   82 (209)
                       |..+.++.
T Consensus       308 -~~~~~~~~  315 (381)
T TIGR00837       308 -RFKTGLLT  315 (381)
T ss_pred             -Cchhhhhh
Confidence             55555443

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=95.07  E-value=0.1  Score=48.47  Aligned_cols=58  Identities=17%  Similarity=0.296  Sum_probs=47.7

Q ss_pred             cChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchhc
Q psy799            9 ASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVLF   81 (209)
Q Consensus         9 ~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All~   81 (209)
                      ++.++..+.+++.+|+. +.++.+.+.++|+++.+|.+.+.++             .|+++|+|  +|+.+.++
T Consensus       252 ~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~-------------~f~~~~~k--~~y~~~v~  310 (378)
T TIGR00796       252 NGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSE-------------YFHKLVPK--LSYKTWVI  310 (378)
T ss_pred             CcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHhcCC--CCHHHHHH
Confidence            36678889999999997 5789999999999999999988554             57777764  88877765

transmembrane helical spanners.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	209
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	2e-08
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	4e-06
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	2e-04

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 13/129 (10%)

Query: 3   PVFEMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHM 61
           P   +  S +     +   LG     IV         G          +   AA  +G  
Sbjct: 251 PNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLF 310

Query: 62  LQAFSFVHVKRLTPAPAVLFQVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLG 121
              F+ V+ K  TP   ++            I+  +  L+ I      +F +  +  V+ 
Sbjct: 311 PPIFARVN-KAGTPVAGLIIVG---------ILMTIFQLSSISPNATKEFGLVSSVSVIF 360

Query: 122 ILVYIPFVY 130
            L  +P++Y
Sbjct: 361 TL--VPYLY 367

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 12/116 (10%), Positives = 45/116 (38%), Gaps = 7/116 (6%)

Query: 9   ASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFV 68
           +  A+AVA    +      ++ +G + +      +  +G   + Y+  ++G + + F   
Sbjct: 256 SENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFE-- 313

Query: 69  HVKRLTPAPAVLFQVPLVIPIFVLIMSIVLSLTPIVTKPAPQFLIAVAFIVLGILV 124
                     +      +     ++ +++ ++  + +  +  F++   F++L   +
Sbjct: 314 RKVWFKSTEGL-----YITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYI 364

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 20/130 (15%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 1   MDPVFEMIASPAVAVAFSERVLGPFQFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGH 60
           ++    ++ +  V ++     +     ++   ++L       S   G +R  Y   ++  
Sbjct: 265 INLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNL 324

Query: 61  MLQAFSFVHVKRLTPAPAVLFQVPLVIPIFVLIMS----------IVLSLTPIVTKPAPQ 110
           +  AF+ ++ K   P   V+ Q+ +     +++ +          I L+LT ++      
Sbjct: 325 LPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIY-LCAY 382

Query: 111 FLIAVAFIVL 120
           F++ + +IVL
Sbjct: 383 FMLFIGYIVL 392

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	209
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.62
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	99.27
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	99.26

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.62  E-value=1.9e-15  Score=135.54  Aligned_cols=127  Identities=15%  Similarity=0.131  Sum_probs=102.6

Q ss_pred             CChHHHhcChHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccchh
Q psy799            2 DPVFEMIASPAVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAVL   80 (209)
Q Consensus         2 ls~~el~~S~avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~All   80 (209)
                      +|++++.+++.+..+.+++.+|++ +.++.+++.++++++.|+.+++.+|++|++||||++|++|+++| |+++|..|++
T Consensus       250 ~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~-~~~~P~~a~~  328 (445)
T 3l1l_A          250 IPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLI  328 (445)
T ss_dssp             SCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCC-TTCCCHHHHH
T ss_pred             CCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcC-CCCCCHHHHH
Confidence            456677666667778888888886 68899999999999999999999999999999999999999999 6799999988


Q ss_pred             cc------------------------------------------------c-----c--hhHHHHHHHHHHHHHhhcccc
Q psy799           81 FQ------------------------------------------------V-----P--LVIPIFVLIMSIVLSLTPIVT  105 (209)
Q Consensus        81 ~~------------------------------------------------v-----p--liiPil~ll~~l~Ll~~~l~~  105 (209)
                      ++                                                -     |  .+++++.++.|++++..   .
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~~~~~~---~  405 (445)
T 3l1l_A          329 IVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLYCIWAVVG---S  405 (445)
T ss_dssp             HHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSGGGCTTTHHHHHHHHHHHHHHHHH---S
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccchhHHHHHHHHHHHHHHHHH---c
Confidence            76                                                1     1  25566666666666543   4


Q ss_pred             CchhHHHHHHHHHHHHHHHHHhhhhhhc
Q psy799          106 KPAPQFLIAVAFIVLGILVYIPFVYYQY  133 (209)
Q Consensus       106 ~p~~~~l~gl~~il~Gl~iY~~~v~~~~  133 (209)
                      ++ ...++++++++.|+++|+...++++
T Consensus       406 ~~-~~~~~~~~~~~~g~~~y~~~~~~~~  432 (445)
T 3l1l_A          406 GA-KEVMWSFVTLMVITAMYALNYNRLH  432 (445)
T ss_dssp             CH-HHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             CH-HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            55 6788899999999999988665543

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=99.27  E-value=1.3e-11  Score=112.61  Aligned_cols=80  Identities=20%  Similarity=0.217  Sum_probs=62.1

Q ss_pred             CChHHHhcChHHHHHHH--HHhcC---ch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCcc
Q psy799            2 DPVFEMIASPAVAVAFS--ERVLG---PF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTP   75 (209)
Q Consensus         2 ls~~el~~S~avAv~~a--~~vlG---~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP   75 (209)
                      +|.+++..++..+..+.  ...+|   ++ ..++.+.+.++++++.|+.+++.||++|++||||++|++|+++| |+++|
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P  338 (511)
T 4djk_A          260 IPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMN-KNGVP  338 (511)
T ss_dssp             SCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGCSSSCCCCC-SSSCC
T ss_pred             cCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccHHHHhcC-CCCCc
Confidence            34555554444433332  22344   33 57889999999999999999999999999999999999999999 57999


Q ss_pred             ccchhcc
Q psy799           76 APAVLFQ   82 (209)
Q Consensus        76 ~~All~~   82 (209)
                      .+|++++
T Consensus       339 ~~ai~~~  345 (511)
T 4djk_A          339 VTLVISQ  345 (511)
T ss_dssp             CHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=99.26  E-value=1.8e-11  Score=109.79  Aligned_cols=79  Identities=13%  Similarity=0.302  Sum_probs=64.9

Q ss_pred             CChHHHhcCh-HHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhHhhcccCCCCccccch
Q psy799            2 DPVFEMIASP-AVAVAFSERVLGPF-QFIVPLGVVLATFGCALSVQFGVTRLCYAAGREGHMLQAFSFVHVKRLTPAPAV   79 (209)
Q Consensus         2 ls~~el~~S~-avAv~~a~~vlG~~-a~iI~l~v~lS~~gsln~~i~~~SRi~~a~ARdG~LP~~fs~ih~k~~TP~~Al   79 (209)
                      ++++++.+++ .+....++..+|++ ..++.+++.++++++.|+.+++.||++|++||||++|++|++.| + ++|.+|+
T Consensus       247 ~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~f~~~~-~-~~P~~a~  324 (444)
T 3gia_A          247 LPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKV-W-FKSTEGL  324 (444)
T ss_dssp             SCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSSCCTTS-C-CSCTHHH
T ss_pred             CCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHhCCC-C-CCCcHHH
Confidence            4677776533 33445566777775 46899999999999999999999999999999999999999987 3 5799998


Q ss_pred             hcc
Q psy799           80 LFQ   82 (209)
Q Consensus        80 l~~   82 (209)
                      +++
T Consensus       325 ~~~  327 (444)
T 3gia_A          325 YIT  327 (444)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00