Psyllid ID: psy8135

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
MTRWIPPSALRRDALTPENVQDATFRKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKYTSMYARLCKRLTEQAPNFEPPDESCTFKKHLLWVCKNEFENRSRATEAFGNLPLSPDDEDRRQLAKQKMLGNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQTNKDVSENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTSTPHLPLRIRFMLQDVEDLRRNNWVPRQANNPEKPVPINQIIEEDHDPVNFILPHRNNGMKEYSSIYLYLY
cccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccccccccccccccccccccEEcc
ccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccEEHHHHHHHHHHHHHHccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHccccccccHHHHHHHHHHHccccccccccccccccEEEEEEc
mtrwippsalrrdaltpenvqDATFRKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKYTSMYARLCKRLteqapnfeppdesctfkkHLLWVCKNEFenrsrateafgnlplspddeDRRQLAKQKMLGNIKFIGelgkheivTESILHTCIQEllpknrkvqtnkDVSENLECLCQIMKTCgrildsekgqGLMNQYFSRMktvqtstphlpLRIRFMLQDVEdlrrnnwvprqannpekpvpinqiieedhdpvnfilphrnngmkEYSSIYLYLY
mtrwippsalrrdaltpenvqdaTFRKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKYTSMYARLCKRLTEQAPNFEPPDESCTFKKHLLWVCKNEFENRSRAteafgnlplspddEDRRQLAKQKMLGNIKFIGELGKHEIVTESILHTCIQEllpknrkvqtnKDVSENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTvqtstphlplRIRFMLQDVEDLRrnnwvprqannpekpvpINQIIEEDHDPVNFIlphrnngmkeySSIYLYLY
MTRWIPPSALRRDALTPENVQDATFRKVRELLNKLTPEkfdklsddllqldlnsskILKGVILLIFEKALHETKYTSMYARLCKRLTEQAPNFEPPDESCTFKKHLLWVCKNEFENRSRATEAFGNLPLSPDDEDRRQLAKQKMLGNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQTNKDVSENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTSTPHLPLRIRFMLQDVEDLRRNNWVPRQANNPEKPVPINQIIEEDHDPVNFILPHRNNGMKEYSSIYLYLY
************************FRKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKYTSMYARLCKRLTEQA*******ESCTFKKHLLWVCKNEFE****************************MLGNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQTNKDVSENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTSTPHLPLRIRFMLQDVEDLRRNNWV************INQIIEEDHDPVNFILPHRNNGMKEYSSIYLYL*
*TRWIP*******************RKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKYTSMYARLCKRLTEQAPNFEPPDESCTFKKHLLWVCKNEFENRSRATEA***************LAKQKMLGNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQTNKDVSENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQ****HLPLRIRFMLQDVEDLRRNNW*******************************************LYLY
MTRWIPPSALRRDALTPENVQDATFRKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKYTSMYARLCKRLTEQAPNFEPPDESCTFKKHLLWVCKNEFENRSRATEAFGNLPLSPDDEDRRQLAKQKMLGNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQTNKDVSENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTSTPHLPLRIRFMLQDVEDLRRNNWVPRQANNPEKPVPINQIIEEDHDPVNFILPHRNNGMKEYSSIYLYLY
***************TPENVQDATFRKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKYTSMYARLCKRLTEQAPNFEPPDESCTFKKHLLWVCKNEFENRSRATEAFGNLPLSPDDEDRRQLAKQKMLGNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQTNKDVSENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTSTPHLPLRIRFMLQDVEDLRRNNWVPRQA*NPEKPVPINQIIEEDHDPVNFIL*HRNNGMKEYSSIYLYLY
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MTRWIPPSALRRDALTPENVQDATFRKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKYTSMYARLCKRLTEQAPNFEPPDESCTFKKHLLWVCKNEFENRSRATEAFGNLPLSPDDEDRRQLAKQKMLGNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQTNKDVSENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTSTPHLPLRIRFMLQDVEDLRRNNWVPRQANNPEKPVPINQIIEEDHDPVNFILPHRNNGMKEYSSIYLYLY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query295 2.2.26 [Sep-21-2011]
Q62448 906 Eukaryotic translation in yes N/A 0.928 0.302 0.498 2e-66
Q5R7J9 907 Eukaryotic translation in yes N/A 0.928 0.302 0.498 2e-66
P78344 907 Eukaryotic translation in yes N/A 0.928 0.302 0.498 2e-66
Q95L46 907 Eukaryotic translation in yes N/A 0.928 0.302 0.498 2e-66
P79398 907 Eukaryotic translation in yes N/A 0.928 0.302 0.494 5e-66
Q04637 1599 Eukaryotic translation in no N/A 0.776 0.143 0.410 6e-43
Q6NZJ6 1600 Eukaryotic translation in no N/A 0.776 0.143 0.406 1e-42
Q93ZT6 780 Eukaryotic translation in yes N/A 0.806 0.305 0.421 2e-42
O43432 1585 Eukaryotic translation in no N/A 0.847 0.157 0.392 4e-41
Q80XI3 1579 Eukaryotic translation in no N/A 0.847 0.158 0.389 2e-40
>sp|Q62448|IF4G2_MOUSE Eukaryotic translation initiation factor 4 gamma 2 OS=Mus musculus GN=Eif4g2 PE=1 SV=2 Back     alignment and function desciption
 Score =  252 bits (644), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 146/293 (49%), Positives = 196/293 (66%), Gaps = 19/293 (6%)

Query: 3   RWIPPSALRRDALTPEN-------VQDATFRKVRELLNKLTPEKFDKLSDDLLQLDLNSS 55
           +WIP  + RRD  +  N         DA FRKVR +LNKLTPEKFDKL  +LL + + S 
Sbjct: 49  KWIPARSTRRDDNSAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESK 108

Query: 56  KILKGVILLIFEKALHETKYTSMYARLCKRLTEQAPNFEPP--------DESCTFKKHLL 107
            ILKGVILLI +KAL E KY+S+YA+LC RL E APNF+ P         +S TF++ L+
Sbjct: 109 LILKGVILLIVDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLI 168

Query: 108 WVCKNEFENRSRATEAFGN--LPLSPDDEDRRQLAKQKMLGNIKFIGELGKHEIVTESIL 165
              ++EFENR+R  + +     PL P++E++R +AK KMLGNIKFIGELGK +++ ESIL
Sbjct: 169 SKLQDEFENRTRNVDVYDKRENPLLPEEEEQRAIAKIKMLGNIKFIGELGKLDLIHESIL 228

Query: 166 HTCIQELLPKNRKVQTNKDVSENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTS 225
           H CI+ LL K ++VQ  KD+ E+LECLCQIM+T G  LD E+ + LM+QYF+RM ++  S
Sbjct: 229 HKCIKTLLEKKKRVQL-KDMGEDLECLCQIMRTVGPRLDHERAKSLMDQYFARMCSLMLS 287

Query: 226 TPHLPLRIRFMLQDVEDLRRNNWVPRQANNPEKPVPINQIIEEDHDPVNFILP 278
              LP RIRF+LQD  +LR ++WVPR+A     P  INQI ++    +   +P
Sbjct: 288 K-ELPARIRFLLQDTVELREHHWVPRKAFLDNGPKTINQIRQDAVKDLGVFIP 339
Appears to play a role in the switch from cap-dependent to IRES-mediated translation during mitosis, apoptosis and viral infection. Cleaved by some caspases and viral proteases.
Mus musculus (taxid: 10090)
>sp|Q5R7J9|IF4G2_PONAB Eukaryotic translation initiation factor 4 gamma 2 OS=Pongo abelii GN=EIF4G2 PE=2 SV=2 Back     alignment and function description
>sp|P78344|IF4G2_HUMAN Eukaryotic translation initiation factor 4 gamma 2 OS=Homo sapiens GN=EIF4G2 PE=1 SV=1 Back     alignment and function description
>sp|Q95L46|IF4G2_BOVIN Eukaryotic translation initiation factor 4 gamma 2 OS=Bos taurus GN=EIF4G2 PE=2 SV=2 Back     alignment and function description
>sp|P79398|IF4G2_RABIT Eukaryotic translation initiation factor 4 gamma 2 OS=Oryctolagus cuniculus GN=EIF4G2 PE=2 SV=1 Back     alignment and function description
>sp|Q04637|IF4G1_HUMAN Eukaryotic translation initiation factor 4 gamma 1 OS=Homo sapiens GN=EIF4G1 PE=1 SV=4 Back     alignment and function description
>sp|Q6NZJ6|IF4G1_MOUSE Eukaryotic translation initiation factor 4 gamma 1 OS=Mus musculus GN=Eif4g1 PE=1 SV=1 Back     alignment and function description
>sp|Q93ZT6|IF4G1_ARATH Eukaryotic translation initiation factor isoform 4G-1 OS=Arabidopsis thaliana GN=EIF(ISO)4G1 PE=1 SV=1 Back     alignment and function description
>sp|O43432|IF4G3_HUMAN Eukaryotic translation initiation factor 4 gamma 3 OS=Homo sapiens GN=EIF4G3 PE=1 SV=2 Back     alignment and function description
>sp|Q80XI3|IF4G3_MOUSE Eukaryotic translation initiation factor 4 gamma 3 OS=Mus musculus GN=Eif4g3 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
307176611 863 Eukaryotic translation initiation factor 0.932 0.318 0.617 1e-92
332022053 976 Eukaryotic translation initiation factor 0.932 0.281 0.617 2e-92
340715240 889 PREDICTED: eukaryotic translation initia 0.888 0.294 0.634 3e-92
350397556 898 PREDICTED: LOW QUALITY PROTEIN: eukaryot 0.888 0.291 0.634 4e-92
383855580 900 PREDICTED: eukaryotic translation initia 0.888 0.291 0.638 5e-92
242005887 896 eukaryotic translation initiation factor 0.949 0.312 0.599 2e-91
328782175 899 PREDICTED: eukaryotic translation initia 0.888 0.291 0.630 5e-91
380020251 936 PREDICTED: eukaryotic translation initia 0.888 0.279 0.630 5e-91
189236794 906 PREDICTED: similar to eukaryotic transla 0.901 0.293 0.638 2e-89
328717817 966 PREDICTED: eukaryotic translation initia 0.884 0.270 0.615 1e-88
>gi|307176611|gb|EFN66079.1| Eukaryotic translation initiation factor 4 gamma 2 [Camponotus floridanus] Back     alignment and taxonomy information
 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 179/290 (61%), Positives = 223/290 (76%), Gaps = 15/290 (5%)

Query: 3   RWIPPSALRRDALTPENVQDATFRKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVI 62
           RWIPPS +RRDALTPE+  D  FRKVR +LNKLTPEKF KLS+DLL ++LNS  ILKGVI
Sbjct: 15  RWIPPSTVRRDALTPESRNDLIFRKVRGILNKLTPEKFAKLSNDLLNVELNSHVILKGVI 74

Query: 63  LLIFEKALHETKYTSMYARLCKRLTEQAPNFEPP---DES----CTFKKHLLWVCKNEFE 115
            LIFEKAL E KY+SMYARLCK+L+++A NFEP    DES     TF+  LL  CK+EFE
Sbjct: 75  FLIFEKALDEPKYSSMYARLCKQLSDEAANFEPRKPIDESQKGQSTFRVLLLNKCKDEFE 134

Query: 116 NRSRATEAFGNL-PLSPDDEDRRQLAKQKMLGNIKFIGELGKHEIVTESILHTCIQELLP 174
           NRS+A+EAF N   L P++E+RRQ+AK+KMLGNIKFIGELGK  IV+E ILH CIQ+LL 
Sbjct: 135 NRSKASEAFENQDELGPEEEERRQVAKRKMLGNIKFIGELGKLGIVSEPILHRCIQQLLE 194

Query: 175 KNRKVQTNKDVSENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTSTPHLPLRIR 234
           K R+  +  D +E++ECLCQIM+TCGRILDS+KG+GLM+QYF RM ++  S   LPLRI+
Sbjct: 195 KKRRGGSRGDAAEDIECLCQIMRTCGRILDSDKGRGLMDQYFKRMNSLAESR-DLPLRIK 253

Query: 235 FMLQDVEDLRRNNWVPRQANNPEKPVPINQIIEEDHDPVNFILPHRNNGM 284
           FML+DV +LRR++W PR+A + E P+PINQI  ++ +      P R NG 
Sbjct: 254 FMLRDVIELRRDDWKPRKATSTEGPMPINQIRNDNEE------PSRGNGF 297

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332022053|gb|EGI62378.1| Eukaryotic translation initiation factor 4 gamma 2 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|340715240|ref|XP_003396125.1| PREDICTED: eukaryotic translation initiation factor 4 gamma 2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350397556|ref|XP_003484913.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 4 gamma 2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383855580|ref|XP_003703288.1| PREDICTED: eukaryotic translation initiation factor 4 gamma 2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|242005887|ref|XP_002423791.1| eukaryotic translation initiation factor 4 gamma, putative [Pediculus humanus corporis] gi|212507007|gb|EEB11053.1| eukaryotic translation initiation factor 4 gamma, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|328782175|ref|XP_394628.4| PREDICTED: eukaryotic translation initiation factor 4 gamma 2-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380020251|ref|XP_003694004.1| PREDICTED: eukaryotic translation initiation factor 4 gamma 2-like [Apis florea] Back     alignment and taxonomy information
>gi|189236794|ref|XP_969772.2| PREDICTED: similar to eukaryotic translation initiation factor 4 gamma, 2 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328717817|ref|XP_001950573.2| PREDICTED: eukaryotic translation initiation factor 4 gamma 2-like [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query295
FB|FBgn0010488 1526 NAT1 "NAT1" [Drosophila melano 0.955 0.184 0.484 3.4e-66
ZFIN|ZDB-GENE-030131-6550 898 eif4g2b "eukaryotic translatio 0.952 0.312 0.471 7.6e-64
ZFIN|ZDB-GENE-030131-2173 891 eif4g2a "eukaryotic translatio 0.952 0.315 0.464 5.4e-63
UNIPROTKB|F1NQU7 864 EIF4G2 "Eukaryotic translation 0.928 0.317 0.479 4.8e-62
UNIPROTKB|F1P4A7 902 EIF4G2 "Eukaryotic translation 0.928 0.303 0.479 6.1e-62
UNIPROTKB|H0Y3P2 869 EIF4G2 "Eukaryotic translation 0.928 0.315 0.470 3.9e-60
UNIPROTKB|H0YCH5444 EIF4G2 "Eukaryotic translation 0.928 0.617 0.470 3.9e-60
UNIPROTKB|F1LRX1 868 Eif4g2 "Protein Eif4g2" [Rattu 0.928 0.315 0.470 3.9e-60
MGI|MGI:109207 906 Eif4g2 "eukaryotic translation 0.928 0.302 0.470 8.2e-60
UNIPROTKB|F1LN59 906 Eif4g2 "Protein Eif4g2" [Rattu 0.928 0.302 0.470 8.2e-60
FB|FBgn0010488 NAT1 "NAT1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 685 (246.2 bits), Expect = 3.4e-66, P = 3.4e-66
 Identities = 139/287 (48%), Positives = 190/287 (66%)

Query:     3 RWIPPSALRRDALTPENVQDATFRKVRELLNKLTPEXXXXXXXXXXXXXXXXXXILKGVI 62
             RWIPPS   +  LT     DA FR+VR +LNKLTPE                  ILKGVI
Sbjct:   534 RWIPPSLRPQHGLTQSEKNDAVFRRVRGILNKLTPEKFQELSDELLKLDLNSIAILKGVI 593

Query:    63 LLIFEKALHETKYTSMYARLCKRLTEQAPNFEP-PDESCTFKKHLLWVCKNEFENRSRAT 121
             LLIF+KAL E KY+SMYA+LCKRL+E+AP+F+  P  S TF + L+ VC+++F NR +  
Sbjct:   594 LLIFDKALDEPKYSSMYAQLCKRLSEEAPSFDKEPSNSSTFLRLLIAVCRDKFNNRLKRD 653

Query:   122 EAFGNLPLS--PDDEDRRQLAKQKMLGNIKFIGELGKHEIVTESILHTCIQELLPKNRK- 178
             E     P     D+E+RR LAKQ+MLGN+KFIGEL K +++++++LH CI EL  K +K 
Sbjct:   654 ENDNRPPPENEADEEERRHLAKQRMLGNVKFIGELNKLDMLSKNVLHQCIMELFDKKKKR 713

Query:   179 VQTNKDVSENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTSTPHLPLRIRFMLQ 238
                 +++ E++ECL Q++KTCG+ LDSE+G+ LMNQYF +++    S+ + P RIRFML+
Sbjct:   714 TAGTQEMCEDMECLAQLLKTCGKNLDSEQGKELMNQYFEKLERRSKSSEYPP-RIRFMLK 772

Query:   239 DVEDLRRNNWVPRQANNPEKPVPINQIIEEDHDPVNFILPHRNNGMK 285
             DV +LR+NNWVPR+    E PVPI QI  +D   +    P+RN  M+
Sbjct:   773 DVIELRQNNWVPRKLGTTEGPVPIKQIRSDDDSIIRTPFPNRNRDMR 819
GO:0005845 "mRNA cap binding complex" evidence=ISS
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP
GO:0048102 "autophagic cell death" evidence=IEP
GO:0003677 "DNA binding" evidence=IEA
GO:0016070 "RNA metabolic process" evidence=IEA
GO:0046331 "lateral inhibition" evidence=IMP
ZFIN|ZDB-GENE-030131-6550 eif4g2b "eukaryotic translation initiation factor 4, gamma 2b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2173 eif4g2a "eukaryotic translation initiation factor 4, gamma 2a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQU7 EIF4G2 "Eukaryotic translation initiation factor 4 gamma 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P4A7 EIF4G2 "Eukaryotic translation initiation factor 4 gamma 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|H0Y3P2 EIF4G2 "Eukaryotic translation initiation factor 4 gamma 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H0YCH5 EIF4G2 "Eukaryotic translation initiation factor 4 gamma 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1LRX1 Eif4g2 "Protein Eif4g2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:109207 Eif4g2 "eukaryotic translation initiation factor 4, gamma 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1LN59 Eif4g2 "Protein Eif4g2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
pfam02854198 pfam02854, MIF4G, MIF4G domain 4e-40
smart00543200 smart00543, MIF4G, Middle domain of eukaryotic ini 5e-37
>gnl|CDD|217253 pfam02854, MIF4G, MIF4G domain Back     alignment and domain information 
 Score =  138 bits (349), Expect = 4e-40
 Identities = 74/224 (33%), Positives = 127/224 (56%), Gaps = 27/224 (12%)

Query: 25  FRKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKYTSMYARLCK 84
            +KV+ LLNKL+P  F+K+ D+LL+L+++   +LK ++ LIFEKA+ E  +   YARLC 
Sbjct: 1   LKKVKGLLNKLSPSNFEKIIDELLKLNMSDKNLLKYILELIFEKAVEEPNFIPAYARLCA 60

Query: 85  RLTEQAPNFEPPDESCTFKKHLLWVCKNEFENRSRATEAFGNLPLSPDDEDRRQLAKQKM 144
            L  + P+         F + LL   + EFE                  E+  +  +++ 
Sbjct: 61  GLNSKNPD---------FGELLLNRLQEEFEKG---------------VEEEERGNRKRR 96

Query: 145 LGNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQTNKDVSENLECLCQIMKTCGRILD 204
           LG ++F+GEL   +++TE I+  C++ELL      + +     +LE L  ++ TCG++LD
Sbjct: 97  LGLVRFLGELFNFKVLTEKIILECLKELLESL--TEEDPRDEFSLEILLLLLTTCGKLLD 154

Query: 205 SEKGQGLMNQYFSRMKT-VQTSTPHLPLRIRFMLQDVEDLRRNN 247
            EK + LM++   R++  + ++ P L  R+RFML+D+ +LR+N 
Sbjct: 155 REKLKKLMDEILERIQKYLLSADPELSSRLRFMLEDLIELRKNK 198

MIF4G is named after Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Length = 198
>gnl|CDD|214713 smart00543, MIF4G, Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 295
PF02854209 MIF4G: MIF4G domain; InterPro: IPR003890 This entr 100.0
KOG0401|consensus 970 99.98
smart00543200 MIF4G Middle domain of eukaryotic initiation facto 99.97
KOG2140|consensus 739 99.91
KOG2141|consensus 822 99.91
KOG3942|consensus348 99.27
KOG2051|consensus 1128 99.12
KOG2051|consensus 1128 98.54
KOG1104|consensus 759 97.08
KOG0401|consensus970 95.68
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 95.13
PF02847113 MA3: MA3 domain; InterPro: IPR003891 This entry re 94.02
smart00544113 MA3 Domain in DAP-5, eIF4G, MA-3 and other protein 92.52
PF07817256 GLE1: GLE1-like protein; InterPro: IPR012476 The m 91.63
KOG2140|consensus739 87.63
KOG2141|consensus822 83.82
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain Back     alignment and domain information 
Probab=100.00  E-value=5.2e-32  Score=232.86  Aligned_cols=204  Identities=40%  Similarity=0.726  Sum_probs=173.4

Q ss_pred             HHHHHHhhccChhhHHHHHHHHHhhccCC-HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhhCCCCCCCCchhhHHH
Q psy8135          26 RKVRELLNKLTPEKFDKLSDDLLQLDLNS-SKILKGVILLIFEKALHETKYTSMYARLCKRLTEQAPNFEPPDESCTFKK  104 (295)
Q Consensus        26 ~~v~~iLNkLt~~n~~~i~~~l~~~~i~~-~~~l~~vv~~I~ekAv~e~~f~~~yA~Lc~~L~~~~~~~~~~~~~~~Fr~  104 (295)
                      |+++++|||||++||+.+++++.++.... ++.++.+++.||++|+.+|.|+++||+||+.|+...        +..|+.
T Consensus         2 r~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~--------~~~f~~   73 (209)
T PF02854_consen    2 RKVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRF--------PSEFRS   73 (209)
T ss_dssp             HHHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHC--------HHHHHH
T ss_pred             chHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccc--------hhhHHH
Confidence            78999999999999999999999887664 899999999999999999999999999999999875        368999


Q ss_pred             HHHHHHHHHHhhhhhhhhhcCCCCCCccHHHHHHHHHhhhhhHHHHHHHHhhcCCCchhHHHHHHHHhccCCCCCCCCCC
Q psy8135         105 HLLWVCKNEFENRSRATEAFGNLPLSPDDEDRRQLAKQKMLGNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQTNKD  184 (295)
Q Consensus       105 ~Ll~~~q~~F~~~~~~~~~~~~~~l~~ee~e~~~~~k~r~~g~i~FigeLf~~~~i~~~ii~~~l~~Ll~~~~~~~~~~~  184 (295)
                      .+++.||++|+......          +.++.....++++.|+++||||||++++++.+++++|+..|+..........+
T Consensus        74 ~ll~~~~~~f~~~~~~~----------~~~~~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~~~~  143 (209)
T PF02854_consen   74 LLLNRCQEEFEERYSNE----------ELEENRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQPPP  143 (209)
T ss_dssp             HHHHHHHHHHHHHT-HH----------HHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCCHHT
T ss_pred             HHHHHHHHHHHHhhhhh----------hHHHHHHHHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhcccccccCCC
Confidence            99999999999843110          11122344567788999999999999999999999999999997432100014


Q ss_pred             ChhhHHHHHHHHHHhhhhhc-CchhhhHHHHHHHHHHHHHhCC--CCCChHHHHHHHHHHHHHhCC
Q psy8135         185 VSENLECLCQIMKTCGRILD-SEKGQGLMNQYFSRMKTVQTST--PHLPLRIRFMLQDVEDLRRNN  247 (295)
Q Consensus       185 ~e~~iE~l~~LL~~~G~~L~-~~~~~~~ld~~f~~L~~l~~~~--~~~s~rirfmi~~lielR~~~  247 (295)
                      ++.+|+|+|.+|..||+.|+ ....++.|+++|..++....+.  +.+++|+|||+++++|+|+|+
T Consensus       144 ~~~~ie~~~~lL~~~G~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~r~~~~l~~l~~lr~~~  209 (209)
T PF02854_consen  144 DEENIECLCTLLKTCGKKLENSEESPKALDEIFERLQKYANSKKDPNLSSRIRFMLEDLIELRNNK  209 (209)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHSSSSSHHHHHHHHHHHHHHHTC
T ss_pred             cHhHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHhcCC
Confidence            56899999999999999999 3346678999999999999983  489999999999999999975

MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
>KOG0401|consensus Back     alignment and domain information
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G) Back     alignment and domain information
>KOG2140|consensus Back     alignment and domain information
>KOG2141|consensus Back     alignment and domain information
>KOG3942|consensus Back     alignment and domain information
>KOG2051|consensus Back     alignment and domain information
>KOG2051|consensus Back     alignment and domain information
>KOG1104|consensus Back     alignment and domain information
>KOG0401|consensus Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ] Back     alignment and domain information
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins Back     alignment and domain information
>PF07817 GLE1: GLE1-like protein; InterPro: IPR012476 The members of this family are sequences that are similar to the human protein GLE1 (O75458 from SWISSPROT) Back     alignment and domain information
>KOG2140|consensus Back     alignment and domain information
>KOG2141|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
1hu3_A260 Middle Domain Of Human Eif4gii Length = 260 4e-35
2vso_E284 Crystal Structure Of A Translation Initiation Compl 9e-12
3rk6_A234 Crystal Structure Of The Middle Domain Of Human Pai 3e-04
>pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii Length = 260 Back     alignment and structure 
Iteration: 1

 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 103/268 (38%), Positives = 145/268 (54%), Gaps = 27/268 (10%)
Query: 17  PENVQ-DATFRKVRELLNKLTPEXXXXXXXXXXXXXXXXXXILKGVILLIFEKALHETKY 75
           PEN++    FRKVR +LNKLTP+                   LKGVI L+FEKA+ E  +
Sbjct: 3   PENIKTQELFRKVRSILNKLTPQXFNQLXKQVSGLTVDTEERLKGVIDLVFEKAIDEPSF 62
Query: 76  TSMYARLCKRL-TEQAPNFEPPDESCTFKKHLLWVCKNEFENRSRATEAF----GNLPLS 130
           +  YA  C+ L T + P  + P  +  F+K LL  C+ EFE      + F      L  +
Sbjct: 63  SVAYANXCRCLVTLKVPXADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAA 122
Query: 131 PDDEDRRQL----------AKQKMLGNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQ 180
              E+R +L          A+++ +GNIKFIGEL K + +TE+I H C+ +LL       
Sbjct: 123 SAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKXLTEAIXHDCVVKLLK------ 176
Query: 181 TNKDVSENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTSTPHLPLRIRFMLQDV 240
            N D  E+LECLC+++ T G+ LD EK +   +QYF++ + +         RIRF LQDV
Sbjct: 177 -NHD-EESLECLCRLLTTIGKDLDFEKAKPRXDQYFNQXEKI-VKERKTSSRIRFXLQDV 233
Query: 241 EDLRRNNWVPRQANNPEKPVPINQIIEE 268
            DLR  NWV R+A+  + P  I QI +E
Sbjct: 234 IDLRLCNWVSRRAD--QGPKTIEQIHKE 259
>pdb|2VSO|E Chain E, Crystal Structure Of A Translation Initiation Complex Length = 284 Back     alignment and structure
>pdb|3RK6|A Chain A, Crystal Structure Of The Middle Domain Of Human Paip1 Length = 234 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query295
1hu3_A260 EIF4GII; heat repeat, translation; 2.37A {Homo sap 9e-61
2vso_E284 Eukaryotic initiation factor 4F subunit P150; acet 1e-54
2i2o_A224 EIF4G-like protein; protein structure initiative, 3e-51
3rk6_A234 Polyadenylate-binding protein-interacting protein; 2e-47
1uw4_B248 UPF2, regulator of nonsense transcripts 2; nonsens 4e-12
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14 Length = 260 Back     alignment and structure
 Score =  193 bits (490), Expect = 9e-61
 Identities = 100/263 (38%), Positives = 150/263 (57%), Gaps = 26/263 (9%)

Query: 21  QDATFRKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKYTSMYA 80
               FRKVR +LNKLTP+ F++L   +  L +++ + LKGVI L+FEKA+ E  ++  YA
Sbjct: 8   TQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYA 67

Query: 81  RLCKRL-TEQAPNFEPPDESCTFKKHLLWVCKNEFENRSRATEAFGNLP----------- 128
            +C+ L T + P  + P  +  F+K LL  C+ EFE      + F               
Sbjct: 68  NMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEE 127

Query: 129 ---LSPDDEDRRQLAKQKMLGNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQTNKDV 185
              L  + E+ +  A+++ +GNIKFIGEL K +++TE+I+H C+ +LL            
Sbjct: 128 RTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLK--------NHD 179

Query: 186 SENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTSTPHLPLRIRFMLQDVEDLRR 245
            E+LECLC+++ T G+ LD EK +  M+QYF++M+ +         RIRFMLQDV DLR 
Sbjct: 180 EESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKE-RKTSSRIRFMLQDVIDLRL 238

Query: 246 NNWVPRQANNPEKPVPINQIIEE 268
            NWV R+A+  + P  I QI +E
Sbjct: 239 CNWVSRRAD--QGPKTIEQIHKE 259
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E* Length = 284 Back     alignment and structure
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio} Length = 224 Back     alignment and structure
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens} Length = 234 Back     alignment and structure
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14 Length = 248 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
1hu3_A260 EIF4GII; heat repeat, translation; 2.37A {Homo sap 100.0
2vso_E284 Eukaryotic initiation factor 4F subunit P150; acet 100.0
3rk6_A234 Polyadenylate-binding protein-interacting protein; 100.0
2i2o_A224 EIF4G-like protein; protein structure initiative, 100.0
1uw4_B248 UPF2, regulator of nonsense transcripts 2; nonsens 99.71
1h2v_C 771 80 kDa nuclear CAP binding protein; CAP-binding-co 99.18
4b89_A249 General negative regulator of transcription subun; 96.88
4gmj_A229 CCR4-NOT transcription complex subunit 1; mRNA dec 96.32
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 91.97
3pev_B297 Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, he 90.26
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14 Back     alignment and structure
Probab=100.00  E-value=8.1e-55  Score=388.87  Aligned_cols=243  Identities=41%  Similarity=0.725  Sum_probs=188.5

Q ss_pred             CCcchHHHHHHHHHHHhhccChhhHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHh-hCCCCC
Q psy8135          16 TPENVQDATFRKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKYTSMYARLCKRLTE-QAPNFE   94 (295)
Q Consensus        16 ~e~~~~~~l~~~v~~iLNkLt~~n~~~i~~~l~~~~i~~~~~l~~vv~~I~ekAv~e~~f~~~yA~Lc~~L~~-~~~~~~   94 (295)
                      .|+++++.+.|+|+|+|||||++||+.++.+|+++++.+.+.++.|++.||+||+.+|+|+++||+||+.|+. .+|..+
T Consensus         3 ~e~~~~~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~~   82 (260)
T 1hu3_A            3 PENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMAD   82 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC---
T ss_pred             hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCccc
Confidence            3678999999999999999999999999999999999999999999999999999999999999999999987 466654


Q ss_pred             CCCchhhHHHHHHHHHHHHHhhhhhhhhhcCCC--CC----CccH--------HHHHHHHHhhhhhHHHHHHHHhhcCCC
Q psy8135          95 PPDESCTFKKHLLWVCKNEFENRSRATEAFGNL--PL----SPDD--------EDRRQLAKQKMLGNIKFIGELGKHEIV  160 (295)
Q Consensus        95 ~~~~~~~Fr~~Ll~~~q~~F~~~~~~~~~~~~~--~l----~~ee--------~e~~~~~k~r~~g~i~FigeLf~~~~i  160 (295)
                      .++++..||+.||++||++|++.+......++.  ++    ++++        ++.+...|+|++|+++||||||+++++
T Consensus        83 ~~~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l  162 (260)
T 1hu3_A           83 KPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKML  162 (260)
T ss_dssp             ------CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCS
T ss_pred             CCccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCC
Confidence            444678899999999999999887532211110  11    1111        122245678999999999999999999


Q ss_pred             chhHHHHHHHHhccCCCCCCCCCCChhhHHHHHHHHHHhhhhhcCchhhhHHHHHHHHHHHHHhCCCCCChHHHHHHHHH
Q psy8135         161 TESILHTCIQELLPKNRKVQTNKDVSENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTSTPHLPLRIRFMLQDV  240 (295)
Q Consensus       161 ~~~ii~~~l~~Ll~~~~~~~~~~~~e~~iE~l~~LL~~~G~~L~~~~~~~~ld~~f~~L~~l~~~~~~~s~rirfmi~~l  240 (295)
                      ++.+|++|+..|+..        |++++|||+|.||++||+.|+.++++..|+.+|.+|+.+..+. .+|+|+||||+++
T Consensus       163 ~~~i~~~~l~~Ll~~--------~~e~~iE~l~~lL~tvG~~L~~~~~~~~l~~~f~~l~~~~~~~-~ls~Rirfmi~~l  233 (260)
T 1hu3_A          163 TEAIMHDCVVKLLKN--------HDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKER-KTSSRIRFMLQDV  233 (260)
T ss_dssp             CHHHHHHHHHHHHHS--------CSHHHHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSC-SSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence            999999999999996        8899999999999999999998666778999999999999877 8999999999999


Q ss_pred             HHHHhCCCccCccCCCCCCCChHHHHHHh
Q psy8135         241 EDLRRNNWVPRQANNPEKPVPINQIIEED  269 (295)
Q Consensus       241 ielR~~~W~~~~~~~~~~p~~~~~i~~~~  269 (295)
                      +|+|++||+++.+  +.||+|++|||+||
T Consensus       234 ~dLR~~~W~~~~~--~~~pkti~~i~~ea  260 (260)
T 1hu3_A          234 IDLRLCNWVSRRA--DQGPKTIEQIHKEA  260 (260)
T ss_dssp             HHHHHTTTCC-------------------
T ss_pred             HHHHHcCCCCCcc--ccCCCcHHHHHhhC
Confidence            9999999999875  67999999999986
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E* Back     alignment and structure
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens} Back     alignment and structure
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio} Back     alignment and structure
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14 Back     alignment and structure
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A* Back     alignment and structure
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B Back     alignment and structure
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 295
d1hu3a_243 a.118.1.14 (A:) Eukaryotic initiation factor eIF4G 1e-53
d1uw4b_248 a.118.1.14 (B:) Regulator of nonsense transcripts 1e-36
d1h2vc1262 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-bin 3e-04
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 243 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  173 bits (439), Expect = 1e-53
 Identities = 95/249 (38%), Positives = 142/249 (57%), Gaps = 25/249 (10%)

Query: 17  PENVQ-DATFRKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKY 75
           PEN++    FRKVR +LNKLTP+ F++L   +  L +++ + LKGVI L+FEKA+ E  +
Sbjct: 3   PENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSF 62

Query: 76  TSMYARLCKRLTEQ-APNFEPPDESCTFKKHLLWVCKNEFENRSRATEAFGN-------- 126
           +  YA +C+ L     P  + P  +  F+K LL  C+ EFE      + F          
Sbjct: 63  SVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAA 122

Query: 127 ------LPLSPDDEDRRQLAKQKMLGNIKFIGELGKHEIVTESILHTCIQELLPKNRKVQ 180
                   L  + E+ +  A+++ +GNIKFIGEL K +++TE+I+H C+ +LL       
Sbjct: 123 SAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLL------- 175

Query: 181 TNKDVSENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTSTPHLPLRIRFMLQDV 240
                 E+LECLC+++ T G+ LD EK +  M+QYF++M+ +         RIRFMLQDV
Sbjct: 176 -KNHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKE-RKTSSRIRFMLQDV 233

Query: 241 EDLRRNNWV 249
            DLR  NWV
Sbjct: 234 IDLRLCNWV 242
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 248 Back     information, alignment and structure
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 262 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query295
d1hu3a_243 Eukaryotic initiation factor eIF4G {Human (Homo sa 100.0
d1uw4b_248 Regulator of nonsense transcripts 2, UPF2 {Human ( 100.0
d1h2vc1262 CBP80, 80KDa nuclear cap-binding protein {Human (H 99.46
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-46  Score=326.66  Aligned_cols=225  Identities=40%  Similarity=0.693  Sum_probs=187.3

Q ss_pred             CcchHHHHHHHHHHHhhccChhhHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHhhCCCCCC-
Q psy8135          17 PENVQDATFRKVRELLNKLTPEKFDKLSDDLLQLDLNSSKILKGVILLIFEKALHETKYTSMYARLCKRLTEQAPNFEP-   95 (295)
Q Consensus        17 e~~~~~~l~~~v~~iLNkLt~~n~~~i~~~l~~~~i~~~~~l~~vv~~I~ekAv~e~~f~~~yA~Lc~~L~~~~~~~~~-   95 (295)
                      |+.+.+++.|+|+|+|||||++||+.++.+|.++++.+++.++.+++.||+||+.+|.|+++||+||..|....+.... 
T Consensus         4 ~~~~~~~l~r~v~~lLNKLt~~n~~~i~~ei~~l~~~~~~~l~~~v~~I~~kai~e~~f~~~YA~Lc~~l~~~~~~~~~~   83 (243)
T d1hu3a_           4 ENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADK   83 (243)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC----
T ss_pred             hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHhcCccccc
Confidence            5678999999999999999999999999999999999999999999999999999999999999999999987765542 


Q ss_pred             CCchhhHHHHHHHHHHHHHhhhhhhhhhcCCC------CC--------CccHHHHHHHHHhhhhhHHHHHHHHhhcCCCc
Q psy8135          96 PDESCTFKKHLLWVCKNEFENRSRATEAFGNL------PL--------SPDDEDRRQLAKQKMLGNIKFIGELGKHEIVT  161 (295)
Q Consensus        96 ~~~~~~Fr~~Ll~~~q~~F~~~~~~~~~~~~~------~l--------~~ee~e~~~~~k~r~~g~i~FigeLf~~~~i~  161 (295)
                      .+++..||+.||++||++|++...........      ..        ..+.++.+...|++.+|+++||||||++++++
T Consensus        84 ~~~~~~F~~~Ll~~~q~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~k~~~~g~i~figeLy~~~~v~  163 (243)
T d1hu3a_          84 PGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLT  163 (243)
T ss_dssp             -----CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSC
T ss_pred             cccchHHHHHHHHHHHHHHHHhhhhhhhhHhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHccccch
Confidence            45678899999999999999865432211100      00        01111222346778999999999999999999


Q ss_pred             hhHHHHHHHHhccCCCCCCCCCCChhhHHHHHHHHHHhhhhhcCchhhhHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q psy8135         162 ESILHTCIQELLPKNRKVQTNKDVSENLECLCQIMKTCGRILDSEKGQGLMNQYFSRMKTVQTSTPHLPLRIRFMLQDVE  241 (295)
Q Consensus       162 ~~ii~~~l~~Ll~~~~~~~~~~~~e~~iE~l~~LL~~~G~~L~~~~~~~~ld~~f~~L~~l~~~~~~~s~rirfmi~~li  241 (295)
                      .+++++|+..|+.+        ++|++|||+|.||+++|+.|+.+++++.++.+|.+++.+..++ ++|+|+||||++|+
T Consensus       164 ~~~i~~~l~~Ll~~--------~~e~~ie~l~~lL~~~G~~L~~~~~~~~~~~~~~~l~~~~~~~-~~s~Rirfml~~l~  234 (243)
T d1hu3a_         164 EAIMHDCVVKLLKN--------HDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKER-KTSSRIRFMLQDVI  234 (243)
T ss_dssp             HHHHHHHHHHHHHS--------CSHHHHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSC-SSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            99999999999987        8899999999999999999998767788999999999999887 89999999999999


Q ss_pred             HHHhCCCcc
Q psy8135         242 DLRRNNWVP  250 (295)
Q Consensus       242 elR~~~W~~  250 (295)
                      |+|++||+.
T Consensus       235 elR~~~W~s  243 (243)
T d1hu3a_         235 DLRLCNWVS  243 (243)
T ss_dssp             HHHHTTTCC
T ss_pred             HHHHcCCCC
Confidence            999999974
>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure