Psyllid ID: psy8222

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRDKTVSGKPMAGNTATADKDVSRTSRSDSSGEDDSDDDTDDANHNPDNIMPADQLSFKVDGLNCNGYYCPEIEGTRKTG
Secondary Structure (PSIPRED)
cccccEEEEEEcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEcccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEcccccEEEEEEccccccccccccEEccccccEEcHHHccEEEccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
melrngwliqtsskSFAVHAATSTEKQEWMAHINKCIEDLLrksgkkpaathaavwipdneaavCMHCKrtqftvlsrrhhcrkcgsvvcapcsnkrfllpsqsakplrvcLTCYdvlsrdktvsgkpmagntatadkdvsrtsrsdssgeddsdddtddanhnpdnimpadqlsfkvdglncngyycpeiegtrktg
Flexible Loop (DISEMBL)
melrngwliqtssksfAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRfllpsqsakplrVCLTCYDVLsrdktvsgkpmagntatadkdvsrtsrsdssgeddsdddtdDANHNPDNIMPADQLSFKVDGLNCNGYycpeiegtrktg
Low Complexity Region (SEG)
MELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRDKTVSGKPMAGNTATAdkdvsrtsrsdssgeddsdddtddANHNPDNIMPADQLSFKVDGLNCNGYYCPEIEGTRKTG
Disordered region (IsUnstruct)
******WLIQ****SFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLS******************************************************LSFKVDGLNCNGYYCPEI*******
Disordered Region (DISOPRED)
MELRNGWLIQTSSKSFAVH****T****WMAHINK*******************VWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYD**********************************************************************************
Disordered Region (DISEMBL)
MELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRK********HAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRDKTVSGK********************************DANHNPDNIMPADQLSFKVDGLNCNGYYCPEIEGTRKTG
Disordered Region (DISPRO)
MELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSR******************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRDKTVSGKPMAGNTATADKDVSRTSRSDSSGEDDSDDDTDDANHNPDNIMPADQLSFKVDGLNCNGYYCPEIEGTRKTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q91WB4	249	Pleckstrin homology domai	yes	N/A	0.641	0.510	0.669	9e-49
Q5ZLY5	249	Pleckstrin homology domai	yes	N/A	0.595	0.473	0.703	2e-48
Q7ZUV1	247	Pleckstrin homology domai	yes	N/A	0.621	0.497	0.682	2e-48
Q9H8W4	249	Pleckstrin homology domai	yes	N/A	0.641	0.510	0.661	3e-48
Q3TB82	279	Pleckstrin homology domai	no	N/A	0.803	0.569	0.438	1e-36
Q68FU1	279	Pleckstrin homology domai	no	N/A	0.616	0.437	0.532	2e-36
Q96S99	279	Pleckstrin homology domai	no	N/A	0.595	0.422	0.542	3e-36
P34657	266	Uncharacterized protein Z	yes	N/A	0.585	0.436	0.551	4e-36
Q6ZV73	1430	FYVE, RhoGEF and PH domai	no	N/A	0.585	0.081	0.325	8e-18
Q69ZL1	1399	FYVE, RhoGEF and PH domai	no	N/A	0.585	0.082	0.320	1e-15

>sp|Q91WB4|PKHF2_MOUSE Pleckstrin homology domain-containing family F member 2 OS=Mus musculus GN=Plekhf2 PE=1 SV=1

 Score =  192 bits (489), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 85/127 (66%), Positives = 104/127 (81%)

Query: 2   ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNE 61
           ELRNGWLI+T +KSFAV+AAT+TEK EWM HINKC+ DLL KSGK P+  HAAVW+PD+E
Sbjct: 95  ELRNGWLIKTPTKSFAVYAATATEKSEWMNHINKCVTDLLSKSGKTPSNEHAAVWVPDSE 154

Query: 62  AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRD 121
           A VCM C++ +FT ++RRHHCRKCG VVC PCS KRFLLPSQS+KP+R+C  CYD+LS  
Sbjct: 155 ATVCMRCQKAKFTPVNRRHHCRKCGFVVCGPCSEKRFLLPSQSSKPVRICDFCYDLLSTG 214

Query: 122 KTVSGKP 128
              + +P
Sbjct: 215 DMAACQP 221

Mus musculus (taxid: 10090)

>sp|Q5ZLY5|PKHF2_CHICK Pleckstrin homology domain-containing family F member 2 OS=Gallus gallus GN=PLEKHF2 PE=2 SV=1

 Score =  192 bits (487), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 83/118 (70%), Positives = 102/118 (86%)

Query: 2   ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNE 61
           +LRNGWLI+T +KSFAV+AAT+TEK EWM HINKC+ DLL KSGK P+  HAAVW+PD+E
Sbjct: 95  DLRNGWLIKTPTKSFAVYAATATEKSEWMNHINKCVSDLLSKSGKTPSNEHAAVWVPDSE 154

Query: 62  AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLS 119
           A VCM C++ +FT ++RRHHCRKCG VVC PCS KRFLLPSQS+KP+R+C +CYD+LS
Sbjct: 155 ATVCMRCQKAKFTPVNRRHHCRKCGFVVCGPCSEKRFLLPSQSSKPVRICDSCYDLLS 212

Gallus gallus (taxid: 9031)

>sp|Q7ZUV1|PKHF2_DANRE Pleckstrin homology domain-containing family F member 2 OS=Danio rerio GN=plekhf2 PE=2 SV=1

 Score =  192 bits (487), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 84/123 (68%), Positives = 101/123 (82%)

Query: 2   ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNE 61
           ELRNGWLI+T +KSFAV+AAT+TEK EWM+HINKC+ DLL KSGK P   HAAVW+PD+E
Sbjct: 95  ELRNGWLIKTPTKSFAVYAATATEKSEWMSHINKCVSDLLEKSGKSPTGEHAAVWVPDSE 154

Query: 62  AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRD 121
           A VCM C++ +FT ++RRHHCRKCG VVC PCS K+FLLPSQS+KP+RVC  CY  LS  
Sbjct: 155 ATVCMRCQKMKFTPVNRRHHCRKCGFVVCGPCSEKKFLLPSQSSKPVRVCEFCYKQLSTG 214

Query: 122 KTV 124
            T+
Sbjct: 215 ATL 217

Danio rerio (taxid: 7955)

>sp|Q9H8W4|PKHF2_HUMAN Pleckstrin homology domain-containing family F member 2 OS=Homo sapiens GN=PLEKHF2 PE=1 SV=1

 Score =  191 bits (485), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 84/127 (66%), Positives = 104/127 (81%)

Query: 2   ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNE 61
           +LRNGWLI+T +KSFAV+AAT+TEK EWM HINKC+ DLL KSGK P+  HAAVW+PD+E
Sbjct: 95  DLRNGWLIKTPTKSFAVYAATATEKSEWMNHINKCVTDLLSKSGKTPSNEHAAVWVPDSE 154

Query: 62  AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRD 121
           A VCM C++ +FT ++RRHHCRKCG VVC PCS KRFLLPSQS+KP+R+C  CYD+LS  
Sbjct: 155 ATVCMRCQKAKFTPVNRRHHCRKCGFVVCGPCSEKRFLLPSQSSKPVRICDFCYDLLSAG 214

Query: 122 KTVSGKP 128
              + +P
Sbjct: 215 DMATCQP 221

Homo sapiens (taxid: 9606)

>sp|Q3TB82|PKHF1_MOUSE Pleckstrin homology domain-containing family F member 1 OS=Mus musculus GN=Plekhf1 PE=2 SV=1

 Score =  152 bits (384), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/171 (43%), Positives = 100/171 (58%), Gaps = 12/171 (7%)

Query: 1   MELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDN 60
           ++ +N W+I+T+ KSF V AA++TE+QEW++HI +C+   L  +G++P   HAA WIPD 
Sbjct: 94  LQAKNRWMIKTAKKSFVVSAASTTERQEWISHIEECVRRQLLATGRQPTTEHAAPWIPDK 153

Query: 61  EAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSR 120
              +CM C +T+F+ L+RRHHCRKCG VVCA CS +RFLLP  S KPLRVC  CY  L+ 
Sbjct: 154 ATDICMRCTQTRFSALTRRHHCRKCGFVVCAECSRERFLLPRLSPKPLRVCSLCYRELAA 213

Query: 121 DKT-------VSGKP-----MAGNTATADKDVSRTSRSDSSGEDDSDDDTD 159
            K        + G P     + G    A       S  D  G  D D  T 
Sbjct: 214 QKLREEAREGIGGSPPQLSHLGGTVCGASSGDDDDSDEDREGNGDGDWPTQ 264

May induce apoptosis through the lysosomal-mitochondrial pathway. Translocates to the lysosome initiating the permeabilization of lysosomal membrane (LMP) and resulting in the release of CTSD and CTSL to the cytoplasm. Triggers the caspase-independent apoptosis by altering mitochondrial membrane permeabilization (MMP) resulting in the release of PDCD8.

Mus musculus (taxid: 10090)

>sp|Q68FU1|PKHF1_RAT Pleckstrin homology domain-containing family F member 1 OS=Rattus norvegicus GN=Plekhf1 PE=2 SV=1

 Score =  152 bits (383), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 65/122 (53%), Positives = 88/122 (72%)

Query: 1   MELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDN 60
           ++ +N W+I+T+ KSF V AA++TE+QEW++HI +C+   L  +G++P   HAA WIPD 
Sbjct: 94  LQAKNRWMIKTAKKSFVVSAASTTERQEWISHIEECVRRQLLATGRQPTTEHAAPWIPDK 153

Query: 61  EAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSR 120
              +CM C +T+F+ L+RRHHCRKCG VVCA CS +RFLLP  S KPLRVC  CY  L+ 
Sbjct: 154 ATDICMRCTQTRFSALTRRHHCRKCGFVVCAECSRERFLLPRLSPKPLRVCSLCYRELAA 213

Query: 121 DK 122
            K
Sbjct: 214 QK 215

May induce apoptosis through the lysosomal-mitochondrial pathway. Translocates to the lysosome initiating the permeabilization of lysosomal membrane (LMP) and resulting in the release of CTSD and CTSL to the cytoplasm. Triggers the caspase-independent apoptosis by altering mitochondrial membrane permeabilization (MMP) resulting in the release of PDCD8.

Rattus norvegicus (taxid: 10116)

>sp|Q96S99|PKHF1_HUMAN Pleckstrin homology domain-containing family F member 1 OS=Homo sapiens GN=PLEKHF1 PE=2 SV=3

 Score =  151 bits (381), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 64/118 (54%), Positives = 87/118 (73%)

Query: 1   MELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDN 60
           ++ +N W+I+T+ KSF V AA++TE+QEW++HI +C+   LR +G+ P+  HAA WIPD 
Sbjct: 94  LQAKNRWMIKTAKKSFVVSAASATERQEWISHIEECVRRQLRATGRPPSTEHAAPWIPDK 153

Query: 61  EAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVL 118
              +CM C +T+F+ L+RRHHCRKCG VVCA CS +RFLLP  S KP+RVC  CY  L
Sbjct: 154 ATDICMRCTQTRFSALTRRHHCRKCGFVVCAECSRQRFLLPRLSPKPVRVCSLCYREL 211

May induce apoptosis through the lysosomal-mitochondrial pathway. Translocates to the lysosome initiating the permeabilization of lysosomal membrane (LMP) and resulting in the release of CTSD and CTSL to the cytoplasm. Triggers the caspase-independent apoptosis by altering mitochondrial membrane permeabilization (MMP) resulting in the release of PDCD8.

Homo sapiens (taxid: 9606)

>sp|P34657|YOTB_CAEEL Uncharacterized protein ZK632.12 OS=Caenorhabditis elegans GN=ZK632.12 PE=1 SV=2

 Score =  150 bits (380), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 64/116 (55%), Positives = 85/116 (73%)

Query: 4   RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNEAA 63
           ++GW+I+T +KSFAV+AAT TEK+EWM HI +C+ DLL +  K+ A  HAAVW+PD EA 
Sbjct: 97  KHGWIIKTPAKSFAVYAATETEKREWMLHIERCVTDLLERGNKQAATAHAAVWVPDGEAV 156

Query: 64  VCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLS 119
            CM C +TQF ++ RRHHCR CG VVC  CS++ F + +   KP+RVC  C+D LS
Sbjct: 157 KCMVCGKTQFNLVQRRHHCRNCGRVVCGACSSRTFRIDNVHKKPVRVCDHCFDSLS 212

Caenorhabditis elegans (taxid: 6239)

>sp|Q6ZV73|FGD6_HUMAN FYVE, RhoGEF and PH domain-containing protein 6 OS=Homo sapiens GN=FGD6 PE=1 SV=2

 Score = 90.1 bits (222), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 19/135 (14%)

Query: 4    RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRK------------------SG 45
            +N   I++  +SF + A+++TE+ EW+  I++ IE+  +K                    
Sbjct: 1149 QNELKIESVERSFILSASSATERDEWLEAISRAIEEYAKKRITFCPSRSLDEADSENKEE 1208

Query: 46   KKPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSA 105
              P  + A +WIPD  A +CM C  ++FT+  RRHHCR CG +VC  CS+ ++ L     
Sbjct: 1209 VSPLGSKAPIWIPDTRATMCMICT-SEFTLTWRRHHCRACGKIVCQACSSNKYGLDYLKN 1267

Query: 106  KPLRVCLTCYDVLSR 120
            +P RVC  C+  L +
Sbjct: 1268 QPARVCEHCFQELQK 1282

May activate CDC42, a member of the Ras-like family of Rho- and Rac proteins, by exchanging bound GDP for free GTP. May play a role in regulating the actin cytoskeleton and cell shape.

Homo sapiens (taxid: 9606)

>sp|Q69ZL1|FGD6_MOUSE FYVE, RhoGEF and PH domain-containing protein 6 OS=Mus musculus GN=Fgd6 PE=1 SV=2

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 18/134 (13%)

Query: 4    RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIE-----------------DLLRKSGK 46
            +N   I++  +SF + A+++ E+ +W+  I+  IE                 D  RK   
Sbjct: 1119 QNELKIESVERSFILSASSAAERDDWLEAISSSIEEYAKKRITFCPSRSLDEDSERKEEV 1178

Query: 47   KPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAK 106
             P    A +WIPD  A +CM C  ++FT+  RRHHCR CG +VC  CS+ ++ L     +
Sbjct: 1179 SPLGAKAPIWIPDTRATMCMICT-SEFTLTWRRHHCRACGKIVCQACSSNKYGLDYLKGQ 1237

Query: 107  PLRVCLTCYDVLSR 120
              RVC  C+  L +
Sbjct: 1238 LARVCEHCFQELQK 1251

May activate CDC42, a member of the Ras-like family of Rho- and Rac proteins, by exchanging bound GDP for free GTP. May play a role in regulating the actin cytoskeleton and cell shape.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
149689204	263	FYVE finger containing protein [Triatoma	0.787	0.593	0.696	2e-59
357614814	269	FYVE finger containing protein [Danaus p	0.611	0.449	0.801	4e-56
193683445	261	PREDICTED: pleckstrin homology domain-co	0.611	0.463	0.809	7e-55
91087327	282	PREDICTED: similar to FYVE finger contai	0.595	0.418	0.796	3e-54
270010609	294	hypothetical protein TcasGA2_TC010033 [T	0.595	0.401	0.796	5e-54
242004442	235	phafin 2-zinc finger protein FYVE domain	0.606	0.510	0.8	6e-54
194763906	325	GF20914 [Drosophila ananassae] gi|190618	0.777	0.473	0.642	2e-53
157142144	265	hypothetical protein AaeL_AAEL014564 [Ae	0.661	0.494	0.725	6e-53
321464468	261	hypothetical protein DAPPUDRAFT_306755 [	0.651	0.494	0.736	9e-53
170059829	252	conserved hypothetical protein [Culex qu	0.661	0.519	0.717	2e-52

>gi|149689204|gb|ABR27972.1| FYVE finger containing protein [Triatoma infestans]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 110/158 (69%), Positives = 129/158 (81%), Gaps = 2/158 (1%)

Query: 2   ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNE 61
           +LRNGWLI+T+SKSFAV+AATSTEKQEWMAHINKCIEDLLRKSGKK A  HAAVW+PD+E
Sbjct: 95  QLRNGWLIRTASKSFAVYAATSTEKQEWMAHINKCIEDLLRKSGKKAAEVHAAVWVPDSE 154

Query: 62  AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRD 121
           A VCM CKR QFTVL+RRHHCRKCG VVC PCSNK+FLLPSQS+KPLRVCL CYD+LS+ 
Sbjct: 155 ANVCMRCKRNQFTVLNRRHHCRKCGDVVCGPCSNKKFLLPSQSSKPLRVCLNCYDILSKA 214

Query: 122 KTVSGKPMAGNTATADKDVSRTSRSDSSGEDDSDDDTD 159
           K  +    + ++    K+  R   ++SS E+DSDD  D
Sbjct: 215 KVQNNYQNSISSKLESKE--RAGSAESSCEEDSDDKED 250

Source: Triatoma infestans

Species: Triatoma infestans

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357614814|gb|EHJ69289.1| FYVE finger containing protein [Danaus plexippus]

 Score =  223 bits (567), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 97/121 (80%), Positives = 113/121 (93%)

Query: 2   ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNE 61
           + RNGWLI+T+SKSFAV+AATSTEK+EWMAHI KCIEDLLRKSGK+P + HAAVW+PDNE
Sbjct: 79  QFRNGWLIRTASKSFAVYAATSTEKEEWMAHIEKCIEDLLRKSGKQPPSEHAAVWVPDNE 138

Query: 62  AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRD 121
           AA+CMHCK+TQFTVL+RRHHCRKCGSVVC PCS+KRF+LP+QS KPLRVCL CYD L+RD
Sbjct: 139 AAICMHCKKTQFTVLNRRHHCRKCGSVVCGPCSSKRFVLPTQSDKPLRVCLQCYDELTRD 198

Query: 122 K 122
           +
Sbjct: 199 R 199

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193683445|ref|XP_001945853.1| PREDICTED: pleckstrin homology domain-containing family F member 2-like isoform 3 [Acyrthosiphon pisum] gi|328722959|ref|XP_003247716.1| PREDICTED: pleckstrin homology domain-containing family F member 2-like isoform 2 [Acyrthosiphon pisum]

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 98/121 (80%), Positives = 110/121 (90%)

Query: 2   ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNE 61
           +LRNGWLI+T+SKSFAV+AATSTEKQEWMAHINKCIEDLLRKSGKK    HAAVW+PD+E
Sbjct: 95  QLRNGWLIRTASKSFAVYAATSTEKQEWMAHINKCIEDLLRKSGKKAVEVHAAVWVPDSE 154

Query: 62  AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRD 121
           A VCMHCK+TQFTVL+RRHHCR CG+VVC PCS+KRFLLP+QS K LRVCL C+D LSRD
Sbjct: 155 ANVCMHCKKTQFTVLNRRHHCRSCGTVVCGPCSSKRFLLPNQSTKQLRVCLNCFDKLSRD 214

Query: 122 K 122
           K
Sbjct: 215 K 215

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91087327|ref|XP_975593.1| PREDICTED: similar to FYVE finger containing protein [Tribolium castaneum]

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 94/118 (79%), Positives = 108/118 (91%)

Query: 2   ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNE 61
           + RNGWLI+T+SKSFAV+AAT+ EKQEWMAHINKCIEDLLRKSGKK    HAAVW+PD E
Sbjct: 95  QFRNGWLIRTASKSFAVYAATAVEKQEWMAHINKCIEDLLRKSGKKAVEEHAAVWVPDGE 154

Query: 62  AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLS 119
           A VCMHCK+TQFT+++RRHHCRKCG+VVC PCSNKRFLLP+QS+KPLRVCL CYDVL+
Sbjct: 155 APVCMHCKKTQFTLINRRHHCRKCGAVVCGPCSNKRFLLPNQSSKPLRVCLHCYDVLT 212

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010609|gb|EFA07057.1| hypothetical protein TcasGA2_TC010033 [Tribolium castaneum]

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 94/118 (79%), Positives = 108/118 (91%)

Query: 2   ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNE 61
           + RNGWLI+T+SKSFAV+AAT+ EKQEWMAHINKCIEDLLRKSGKK    HAAVW+PD E
Sbjct: 107 QFRNGWLIRTASKSFAVYAATAVEKQEWMAHINKCIEDLLRKSGKKAVEEHAAVWVPDGE 166

Query: 62  AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLS 119
           A VCMHCK+TQFT+++RRHHCRKCG+VVC PCSNKRFLLP+QS+KPLRVCL CYDVL+
Sbjct: 167 APVCMHCKKTQFTLINRRHHCRKCGAVVCGPCSNKRFLLPNQSSKPLRVCLHCYDVLT 224

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004442|ref|XP_002423095.1| phafin 2-zinc finger protein FYVE domain containing protein, putative [Pediculus humanus corporis] gi|212506041|gb|EEB10357.1| phafin 2-zinc finger protein FYVE domain containing protein, putative [Pediculus humanus corporis]

 Score =  215 bits (548), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 96/120 (80%), Positives = 110/120 (91%)

Query: 4   RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNEAA 63
           RNGW+IQT++KSFAV+AATS EK+EW+AHINKC+ DLLRKSGKK + THAAVWIPD EA 
Sbjct: 53  RNGWVIQTATKSFAVYAATSVEKEEWVAHINKCVGDLLRKSGKKASETHAAVWIPDTEAD 112

Query: 64  VCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRDKT 123
           VCMHCK+TQFT+L+RRHHCRKCGSVVC PCSNKRFLLP+QS+KPLRVCL CYD LS+ KT
Sbjct: 113 VCMHCKKTQFTLLTRRHHCRKCGSVVCGPCSNKRFLLPNQSSKPLRVCLNCYDNLSKAKT 172

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194763906|ref|XP_001964073.1| GF20914 [Drosophila ananassae] gi|190618998|gb|EDV34522.1| GF20914 [Drosophila ananassae]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 99/154 (64%), Positives = 117/154 (75%)

Query: 4   RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNEAA 63
           RNGW I+T++KSF V+AATSTEKQEWMAHINKC+EDLLRKSGKKP   HAAVW+PD EA+
Sbjct: 97  RNGWYIRTTTKSFVVYAATSTEKQEWMAHINKCVEDLLRKSGKKPVENHAAVWVPDTEAS 156

Query: 64  VCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRDKT 123
           VCMHCK+TQFT + RRHHCR CG+VVCA CS K+FLLP QS KPLRVC  CYD L    +
Sbjct: 157 VCMHCKKTQFTFIQRRHHCRNCGAVVCAGCSAKKFLLPQQSTKPLRVCDACYDRLKHVPS 216

Query: 124 VSGKPMAGNTATADKDVSRTSRSDSSGEDDSDDD 157
            S    +   A A  +   T+  DSS ++DSD+D
Sbjct: 217 SSSGEDSAAVAAASGNKLNTTAGDSSNDEDSDED 250

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157142144|ref|XP_001647833.1| hypothetical protein AaeL_AAEL014564 [Aedes aegypti] gi|108868270|gb|EAT32501.1| AAEL014564-PA [Aedes aegypti]

 Score =  212 bits (540), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 95/131 (72%), Positives = 109/131 (83%)

Query: 2   ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNE 61
           + RNGWLI+T++KSFAV+AAT TEKQEWMAHINKCIEDLLRKSGKKP   HAAVW+PD+E
Sbjct: 96  QYRNGWLIRTATKSFAVYAATQTEKQEWMAHINKCIEDLLRKSGKKPVENHAAVWVPDSE 155

Query: 62  AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRD 121
           A +CMHCK+TQFT+L RRHHCR CG+VVC PCS+K+FLLP QS KPLRVCL CYD LS  
Sbjct: 156 ANICMHCKKTQFTMLIRRHHCRNCGAVVCGPCSSKKFLLPGQSNKPLRVCLDCYDNLSSM 215

Query: 122 KTVSGKPMAGN 132
           K    K +  N
Sbjct: 216 KREENKGLNAN 226

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321464468|gb|EFX75476.1| hypothetical protein DAPPUDRAFT_306755 [Daphnia pulex]

 Score =  211 bits (538), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 95/129 (73%), Positives = 111/129 (86%)

Query: 4   RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNEAA 63
           RNGWLI T+SKSFAV+AAT+TEK EW+AHINKC+EDLLRKSGKKP   HAAVW+PD EA 
Sbjct: 97  RNGWLICTASKSFAVYAATATEKAEWIAHINKCVEDLLRKSGKKPLGEHAAVWVPDAEAN 156

Query: 64  VCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRDKT 123
           VCMHC ++QF VL+RRHHCRKCG+VVC PCSNK+FLLP QSAKPLRVCLTC+DVL++ K 
Sbjct: 157 VCMHCNKSQFNVLNRRHHCRKCGAVVCGPCSNKKFLLPVQSAKPLRVCLTCHDVLTKTKN 216

Query: 124 VSGKPMAGN 132
             G  ++ N
Sbjct: 217 NGGPNVSLN 225

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170059829|ref|XP_001865532.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167878477|gb|EDS41860.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/131 (71%), Positives = 110/131 (83%)

Query: 2   ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNE 61
           + RNGWLI+T++KSFAV+AAT TEKQEWMAHINKCIEDLLRKSGKKP  THAAVW+PD+E
Sbjct: 93  QYRNGWLIRTATKSFAVYAATQTEKQEWMAHINKCIEDLLRKSGKKPVETHAAVWVPDSE 152

Query: 62  AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRD 121
           A +CMHCK+TQFT+L RRHHCR CG+VVC PCS+K+F+L  QS KPLRVCL CYD LS  
Sbjct: 153 ANICMHCKKTQFTMLIRRHHCRNCGAVVCGPCSSKKFVLAGQSTKPLRVCLDCYDSLSSM 212

Query: 122 KTVSGKPMAGN 132
           K    K ++ N
Sbjct: 213 KREESKGISAN 223

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
FB|FBgn0025381	316	rush "rush hour" [Drosophila m	0.671	0.420	0.666	2e-47
RGD|1312029	249	Plekhf2 "pleckstrin homology d	0.641	0.510	0.669	5.4e-47
MGI|MGI:1919051	249	Plekhf2 "pleckstrin homology d	0.641	0.510	0.669	6.9e-47
UNIPROTKB|Q5ZLY5	249	PLEKHF2 "Pleckstrin homology d	0.595	0.473	0.703	8.8e-47
UNIPROTKB|A4IFN8	249	PLEKHF2 "Uncharacterized prote	0.641	0.510	0.661	1.4e-46
UNIPROTKB|Q9H8W4	249	PLEKHF2 "Pleckstrin homology d	0.641	0.510	0.661	1.4e-46
UNIPROTKB|F1P3N6	249	PLEKHF2 "Pleckstrin homology d	0.595	0.473	0.703	1.8e-46
ZFIN|ZDB-GENE-040426-884	247	plekhf2 "pleckstrin homology d	0.621	0.497	0.682	1.8e-46
UNIPROTKB|E1BSW6	249	PLEKHF1 "Uncharacterized prote	0.616	0.489	0.528	3.5e-36
MGI|MGI:1919537	279	Plekhf1 "pleckstrin homology d	0.616	0.437	0.532	7.2e-36

FB|FBgn0025381 rush "rush hour" [Drosophila melanogaster (taxid:7227)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 90/135 (66%), Positives = 103/135 (76%)

Query:     4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNEAA 63
             RNGW I+T++KSF V AATSTEKQEWMAHINKC+EDLLRKSGKKP   HAAVW+PD +A+
Sbjct:    97 RNGWYIRTTTKSFVVFAATSTEKQEWMAHINKCVEDLLRKSGKKPVENHAAVWVPDTDAS 156

Query:    64 VCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSR--D 121
             VCMHCK+TQFT + RRHHCR CG+VVCA CS K+FLLP QS K LRVC  CY+ L     
Sbjct:   157 VCMHCKKTQFTFIQRRHHCRNCGAVVCAGCSAKKFLLPQQSTKALRVCDACYERLKHVPS 216

Query:   122 KTVSGKPMAGNTATA 136
                SG+  A  T  A
Sbjct:   217 SLGSGEDSAAATGAA 231

GO:0046872 "metal ion binding" evidence=IEA

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0006897 "endocytosis" evidence=IGI

GO:0005769 "early endosome" evidence=IDA

GO:0044448 "cell cortex part" evidence=IDA

GO:0035091 "phosphatidylinositol binding" evidence=IDA

GO:0008333 "endosome to lysosome transport" evidence=IMP

GO:0005770 "late endosome" evidence=IDA

GO:0007032 "endosome organization" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

RGD|1312029 Plekhf2 "pleckstrin homology domain containing, family F (with FYVE domain) member 2" [Rattus norvegicus (taxid:10116)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 85/127 (66%), Positives = 104/127 (81%)

Query:     2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNE 61
             ELRNGWLI+T +KSFAV+AAT+TEK EWM HINKC+ DLL KSGK P+  HAAVW+PD+E
Sbjct:    95 ELRNGWLIKTPTKSFAVYAATATEKSEWMNHINKCVSDLLSKSGKTPSNEHAAVWVPDSE 154

Query:    62 AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRD 121
             A VCM C++ +FT ++RRHHCRKCG VVC PCS KRFLLPSQS+KP+R+C  CYD+LS  
Sbjct:   155 ATVCMRCQKAKFTPVNRRHHCRKCGFVVCGPCSEKRFLLPSQSSKPVRICDFCYDLLSTG 214

Query:   122 KTVSGKP 128
                + +P
Sbjct:   215 DMAACQP 221

GO:0005543 "phospholipid binding" evidence=IEA

GO:0030133 "transport vesicle" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:1919051 Plekhf2 "pleckstrin homology domain containing, family F (with FYVE domain) member 2" [Mus musculus (taxid:10090)]

 Score = 491 (177.9 bits), Expect = 6.9e-47, P = 6.9e-47
 Identities = 85/127 (66%), Positives = 104/127 (81%)

Query:     2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNE 61
             ELRNGWLI+T +KSFAV+AAT+TEK EWM HINKC+ DLL KSGK P+  HAAVW+PD+E
Sbjct:    95 ELRNGWLIKTPTKSFAVYAATATEKSEWMNHINKCVTDLLSKSGKTPSNEHAAVWVPDSE 154

Query:    62 AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRD 121
             A VCM C++ +FT ++RRHHCRKCG VVC PCS KRFLLPSQS+KP+R+C  CYD+LS  
Sbjct:   155 ATVCMRCQKAKFTPVNRRHHCRKCGFVVCGPCSEKRFLLPSQSSKPVRICDFCYDLLSTG 214

Query:   122 KTVSGKP 128
                + +P
Sbjct:   215 DMAACQP 221

GO:0005543 "phospholipid binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q5ZLY5 PLEKHF2 "Pleckstrin homology domain-containing family F member 2" [Gallus gallus (taxid:9031)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 83/118 (70%), Positives = 102/118 (86%)

Query:     2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNE 61
             +LRNGWLI+T +KSFAV+AAT+TEK EWM HINKC+ DLL KSGK P+  HAAVW+PD+E
Sbjct:    95 DLRNGWLIKTPTKSFAVYAATATEKSEWMNHINKCVSDLLSKSGKTPSNEHAAVWVPDSE 154

Query:    62 AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLS 119
             A VCM C++ +FT ++RRHHCRKCG VVC PCS KRFLLPSQS+KP+R+C +CYD+LS
Sbjct:   155 ATVCMRCQKAKFTPVNRRHHCRKCGFVVCGPCSEKRFLLPSQSSKPVRICDSCYDLLS 212

GO:0005543 "phospholipid binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|A4IFN8 PLEKHF2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 84/127 (66%), Positives = 104/127 (81%)

Query:     2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNE 61
             +LRNGWLI+T +KSFAV+AAT+TEK EWM HINKC+ DLL KSGK P+  HAAVW+PD+E
Sbjct:    95 DLRNGWLIKTPTKSFAVYAATATEKSEWMNHINKCVTDLLSKSGKTPSNEHAAVWVPDSE 154

Query:    62 AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRD 121
             A VCM C++ +FT ++RRHHCRKCG VVC PCS KRFLLPSQS+KP+R+C  CYD+LS  
Sbjct:   155 ATVCMRCQKAKFTPVNRRHHCRKCGFVVCGPCSEKRFLLPSQSSKPVRICDFCYDLLSTG 214

Query:   122 KTVSGKP 128
                + +P
Sbjct:   215 DMATCQP 221

GO:0030133 "transport vesicle" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|Q9H8W4 PLEKHF2 "Pleckstrin homology domain-containing family F member 2" [Homo sapiens (taxid:9606)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 84/127 (66%), Positives = 104/127 (81%)

Query:     2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNE 61
             +LRNGWLI+T +KSFAV+AAT+TEK EWM HINKC+ DLL KSGK P+  HAAVW+PD+E
Sbjct:    95 DLRNGWLIKTPTKSFAVYAATATEKSEWMNHINKCVTDLLSKSGKTPSNEHAAVWVPDSE 154

Query:    62 AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRD 121
             A VCM C++ +FT ++RRHHCRKCG VVC PCS KRFLLPSQS+KP+R+C  CYD+LS  
Sbjct:   155 ATVCMRCQKAKFTPVNRRHHCRKCGFVVCGPCSEKRFLLPSQSSKPVRICDFCYDLLSAG 214

Query:   122 KTVSGKP 128
                + +P
Sbjct:   215 DMATCQP 221

GO:0005543 "phospholipid binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0030133 "transport vesicle" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1P3N6 PLEKHF2 "Pleckstrin homology domain-containing family F member 2" [Gallus gallus (taxid:9031)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 83/118 (70%), Positives = 101/118 (85%)

Query:     2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNE 61
             +LRNGWLI+T +KSFAV+AAT+TEK EWM HINKC+ DLL KSGK P+  HAAVW+PD+E
Sbjct:    95 DLRNGWLIKTPTKSFAVYAATATEKSEWMNHINKCVSDLLSKSGKTPSNEHAAVWVPDSE 154

Query:    62 AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLS 119
             A VCM C++ +FT ++RRHHCRKCG VVC PCS KRFLLPSQS+KP+R+C  CYD+LS
Sbjct:   155 ATVCMRCQKAKFTPVNRRHHCRKCGFVVCGPCSEKRFLLPSQSSKPVRICDFCYDLLS 212

GO:0005543 "phospholipid binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0030133 "transport vesicle" evidence=IEA

ZFIN|ZDB-GENE-040426-884 plekhf2 "pleckstrin homology domain containing, family F (with FYVE domain) member 2" [Danio rerio (taxid:7955)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 84/123 (68%), Positives = 101/123 (82%)

Query:     2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNE 61
             ELRNGWLI+T +KSFAV+AAT+TEK EWM+HINKC+ DLL KSGK P   HAAVW+PD+E
Sbjct:    95 ELRNGWLIKTPTKSFAVYAATATEKSEWMSHINKCVSDLLEKSGKSPTGEHAAVWVPDSE 154

Query:    62 AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRD 121
             A VCM C++ +FT ++RRHHCRKCG VVC PCS K+FLLPSQS+KP+RVC  CY  LS  
Sbjct:   155 ATVCMRCQKMKFTPVNRRHHCRKCGFVVCGPCSEKKFLLPSQSSKPVRVCEFCYKQLSTG 214

Query:   122 KTV 124
              T+
Sbjct:   215 ATL 217

GO:0046872 "metal ion binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|E1BSW6 PLEKHF1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 65/123 (52%), Positives = 91/123 (73%)

Query:     1 MELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDN 60
             ++++N W+I+TS KSF V AA+ TE++EW++H+ +CI  LL K+G++P+  HAA WIPD 
Sbjct:    94 LQMKNRWMIKTSKKSFVVSAASLTERKEWISHLEECIRHLLTKTGRQPSTEHAAPWIPDK 153

Query:    61 EAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCY-DVLS 119
                +CM C +T+F+ L+RRHHCRKCG VVC  CS +RFL+P  S KPLRVC  CY  +L+
Sbjct:   154 ATDICMRCTQTKFSTLTRRHHCRKCGFVVCGDCSRQRFLMPRLSPKPLRVCNLCYRQLLA 213

Query:   120 RDK 122
               K
Sbjct:   214 EQK 216

GO:0046872 "metal ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0010314 "phosphatidylinositol-5-phosphate binding" evidence=IEA

GO:0010508 "positive regulation of autophagy" evidence=IEA

GO:0016050 "vesicle organization" evidence=IEA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IEA

GO:0070273 "phosphatidylinositol-4-phosphate binding" evidence=IEA

GO:0072659 "protein localization to plasma membrane" evidence=IEA

MGI|MGI:1919537 Plekhf1 "pleckstrin homology domain containing, family F (with FYVE domain) member 1" [Mus musculus (taxid:10090)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 65/122 (53%), Positives = 88/122 (72%)

Query:     1 MELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDN 60
             ++ +N W+I+T+ KSF V AA++TE+QEW++HI +C+   L  +G++P   HAA WIPD 
Sbjct:    94 LQAKNRWMIKTAKKSFVVSAASTTERQEWISHIEECVRRQLLATGRQPTTEHAAPWIPDK 153

Query:    61 EAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSR 120
                +CM C +T+F+ L+RRHHCRKCG VVCA CS +RFLLP  S KPLRVC  CY  L+ 
Sbjct:   154 ATDICMRCTQTRFSALTRRHHCRKCGFVVCAECSRERFLLPRLSPKPLRVCSLCYRELAA 213

Query:   121 DK 122
              K
Sbjct:   214 QK 215

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005764 "lysosome" evidence=ISO;IDA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IDA

GO:0007032 "endosome organization" evidence=ISO

GO:0010314 "phosphatidylinositol-5-phosphate binding" evidence=ISO

GO:0010508 "positive regulation of autophagy" evidence=ISO

GO:0016050 "vesicle organization" evidence=ISO

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0046902 "regulation of mitochondrial membrane permeability" evidence=ISA

GO:0070273 "phosphatidylinositol-4-phosphate binding" evidence=ISO

GO:0072659 "protein localization to plasma membrane" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34657	YOTB_CAEEL	No assigned EC number	0.5517	0.5858	0.4360	yes	N/A
Q91WB4	PKHF2_MOUSE	No assigned EC number	0.6692	0.6414	0.5100	yes	N/A
Q9H8W4	PKHF2_HUMAN	No assigned EC number	0.6614	0.6414	0.5100	yes	N/A
Q7ZUV1	PKHF2_DANRE	No assigned EC number	0.6829	0.6212	0.4979	yes	N/A
Q5ZLY5	PKHF2_CHICK	No assigned EC number	0.7033	0.5959	0.4738	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	198
pfam01363	68	pfam01363, FYVE, FYVE zinc finger	3e-22
smart00064	68	smart00064, FYVE, Protein present in Fab1, YOTB, V	2e-21
cd01218	123	cd01218, PH_Phafin2-like, Phafin2 (also called EAP	9e-18
cd00065	57	cd00065, FYVE, FYVE domain; Zinc-binding domain; t	2e-16
PTZ00303	1374	PTZ00303, PTZ00303, phosphatidylinositol kinase; P	0.002

>gnl|CDD|216454 pfam01363, FYVE, FYVE zinc finger

 Score = 85.1 bits (211), Expect = 3e-22
 Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 54  AVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLP--SQSAKPLRVC 111
             W+PD++   CM C +  F+   RRHHCR CG V C+ CS+K+  L       KP+RVC
Sbjct: 1   PRWVPDSDVTNCMGCGKP-FSFFRRRHHCRNCGKVFCSSCSSKKIALLPKLGINKPVRVC 59

Query: 112 LTCYDVLSR 120
             CYD L +
Sbjct: 60  DDCYDKLQK 68

The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn++ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. We have included members which do not conserve these histidine residues but are clearly related. Length = 68

>gnl|CDD|214499 smart00064, FYVE, Protein present in Fab1, YOTB, Vac1, and EEA1

 Score = 83.3 bits (206), Expect = 2e-21
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 53  AAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQS-AKPLRVC 111
              WIPD E + CM C   +F +  RRHHCR CG + C+ CS+K+  LP     +P+RVC
Sbjct: 1   RPHWIPDEEVSNCMGC-GKEFNLTKRRHHCRNCGRIFCSKCSSKKAPLPKLGIERPVRVC 59

Query: 112 LTCYDVLSR 120
             CY+ L+ 
Sbjct: 60  DDCYENLNG 68

The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PHD finger and the RING finger. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. The FYVE finger functions in the membrane recruitment of cytosolic proteins by binding to phosphatidylinositol 3-phosphate (PI3P), which is prominent on endosomes. The R+HHC+XCG motif is critical for PI3P binding. Length = 68

>gnl|CDD|241253 cd01218, PH_Phafin2-like, Phafin2 (also called EAPF, FLJ13187, ZFYVE18 or PLEKHF2) Pleckstrin Homology (PH) domain

 Score = 75.0 bits (185), Expect = 9e-18
 Identities = 24/36 (66%), Positives = 28/36 (77%)

Query: 1   MELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKC 36
            EL+NGW I +  KSF V+AAT+TEK EWM HINKC
Sbjct: 88  GELKNGWQIISPKKSFVVYAATATEKSEWMDHINKC 123

Phafin2 is differentially expressed in the liver cancer cell and regulates the structure and function of the endosomes through Rab5-dependent processes. Phafin2 modulates the cell's response to extracellular stimulation by modulating the receptor density on the cell surface. Phafin2 contains a PH domain and a FYVE domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 123

>gnl|CDD|238022 cd00065, FYVE, FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;

 Score = 69.4 bits (170), Expect = 2e-16
 Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 2/57 (3%)

Query: 61  EAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPS-QSAKPLRVCLTCYD 116
           +A+ CM C    FT+  RRHHCR CG + C+ CS+ R  LPS    KP+RVC +CY+
Sbjct: 1   DASSCMGC-GKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMGGGKPVRVCDSCYE 56

Length = 57

>gnl|CDD|140324 PTZ00303, PTZ00303, phosphatidylinositol kinase; Provisional

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 16/79 (20%)

Query: 52  HAAVWIPDNEAA-VCMHCKRTQFTVLSR-----RHHCRKCGSVVCAPCSNKR-------F 98
           H   W  D+E++  C  C R  F  LSR      HHCR CG  +C  C  KR        
Sbjct: 449 HNPSWQKDDESSDSCPSCGRA-FISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKL 507

Query: 99  LLPSQS--AKPLRVCLTCY 115
             P  S  A+   VC TCY
Sbjct: 508 AKPGSSDEAEERLVCDTCY 526

Length = 1374

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
KOG1729|consensus	288		99.95
PF01363	69	FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f	99.81
smart00064	68	FYVE Protein present in Fab1, YOTB, Vac1, and EEA1	99.75
KOG1818|consensus	634		99.56
KOG4424|consensus	623		99.56
cd00065	57	FYVE FYVE domain; Zinc-binding domain; targets pro	99.53
PTZ00303	1374	phosphatidylinositol kinase; Provisional	99.51
KOG1819|consensus	990		99.51
KOG1841|consensus	1287		99.17
KOG1842|consensus	505		99.14
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	99.06
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	98.82
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	98.72
KOG1843|consensus	473		98.54
KOG1409|consensus	404		98.42
cd01226	100	PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin	98.38
cd01261	112	PH_SOS Son of Sevenless (SOS) Pleckstrin homology	98.37
KOG1811|consensus	1141		98.1
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	98.06
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	97.91
cd01228	96	PH_BCR-related BCR (breakpoint cluster region)-rel	97.85
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	97.71
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	97.61
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	97.5
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	97.45
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	97.43
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	97.41
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	97.33
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	97.28
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	97.27
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	97.22
KOG0230|consensus	1598		97.19
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	97.19
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	97.18
PF02318	118	FYVE_2: FYVE-type zinc finger; InterPro: IPR003315	97.07
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	97.05
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	96.99
cd01223	116	PH_Vav Vav pleckstrin homology (PH) domain. Vav pl	96.97
cd01224	109	PH_Collybistin Collybistin pleckstrin homology (PH	96.95
cd01232	114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	96.81
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	96.75
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	96.62
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	96.47
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	96.37
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	96.21
KOG0230|consensus	1598		96.07
KOG1841|consensus	1287		95.99
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	95.75
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	95.55
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	95.4
cd01225	111	PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-	94.51
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	94.14
KOG1729|consensus	288		92.76
KOG0690|consensus	516		91.9
KOG0521|consensus	785		91.68
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	91.39
cd01227	133	PH_Dbs Dbs (DBL's big sister) pleckstrin homology	91.34
KOG0705|consensus	749		90.24
KOG1117|consensus	1186		89.96
cd01231	107	PH_Lnk LNK-family Pleckstrin homology (PH) domain.	87.59
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	86.87
KOG0932|consensus	774		86.77
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	86.46
PF08458	110	PH_2: Plant pleckstrin homology-like region; Inter	85.85
PF15409	89	PH_8: Pleckstrin homology domain	85.43
smart00154	39	ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C	84.05
PF07975	51	C1_4: TFIIH C1-like domain; InterPro: IPR004595 Al	83.08
KOG0320|consensus	187		82.54
KOG2164|consensus	513		81.44
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	80.88
KOG3520|consensus	1167		80.01

>KOG1729|consensus

Probab=99.95  E-value=7e-29  Score=216.20  Aligned_cols=119  Identities=57%  Similarity=1.135  Sum_probs=114.8

Q ss_pred             CCcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHHHHHh---cCCCCCCCCCCccccCCCCCccccCCccCCCcccc
Q psy8222           2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRK---SGKKPAATHAAVWIPDNEAAVCMHCKRTQFTVLSR   78 (198)
Q Consensus         2 ~~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~~---~g~~~~~~~~~~Wv~d~~~~~C~~C~~~~Fs~~~R   78 (198)
                      .++|.|+|.+..|||.++|++..||.+|+.+|.+++.++|+.   .+..|...++++|+||+++.+||.|+++.|+++.|
T Consensus       105 ~~~~~~~~~S~~ks~~~~~as~~ek~e~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~W~PD~ea~~C~~C~~~~Ftl~~R  184 (288)
T KOG1729|consen  105 RVRNGWQILSALKSFTVLAASQTEKNEWQNHITECVEDLLSKNEEDGKSPSNNSAAVWLPDSEATECMVCGCTEFTLSER  184 (288)
T ss_pred             ccccchhhhcccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhhccCCCCCCcCCcccCcccceecccCCCccccHHHH
Confidence            578899999999999999999999999999999999999998   88899999999999999999999999999999999


Q ss_pred             ccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHhhcc
Q psy8222          79 RHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSR  120 (198)
Q Consensus        79 rhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~~  120 (198)
                      |||||+||.|||..|+..++.||....+++|||+.||+.|..
T Consensus       185 RHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el~~  226 (288)
T KOG1729|consen  185 RHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEELEK  226 (288)
T ss_pred             HHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHHhc
Confidence            999999999999999999999999999999999999999975

>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.81  E-value=5.2e-21  Score=133.43  Aligned_cols=65  Identities=52%  Similarity=1.210  Sum_probs=47.6

Q ss_pred             CccccCCCCCccccCCccCCCccccccccccCCceEeCCCCCCeeecC--CC-CCCCeeeccchHHhhc
Q psy8222          54 AVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLP--SQ-SAKPLRVCLTCYDVLS  119 (198)
Q Consensus        54 ~~Wv~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp--~~-~~~~~RVC~~C~~~l~  119 (198)
                      |.|+||.++..|+.|++ +|++++||||||.||.+||+.|+.++..++  .. ..+++|||+.||..|+
T Consensus         1 ~~W~~d~~~~~C~~C~~-~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~   68 (69)
T PF01363_consen    1 PHWVPDSEASNCMICGK-KFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ   68 (69)
T ss_dssp             --SSSGGG-SB-TTT---B-BSSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred             CCcCCCCCCCcCcCcCC-cCCCceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence            57999999999999999 999999999999999999999999999887  32 4499999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....

>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1

Probab=99.75  E-value=5.6e-19  Score=122.82  Aligned_cols=65  Identities=48%  Similarity=1.129  Sum_probs=61.2

Q ss_pred             CccccCCCCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCC-CCeeeccchHHhhc
Q psy8222          54 AVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSA-KPLRVCLTCYDVLS  119 (198)
Q Consensus        54 ~~Wv~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~-~~~RVC~~C~~~l~  119 (198)
                      +.|++|.++..|+.|++ +|++++|+||||.||.|||..|+..+.+++..+. +|+|||+.||+.|+
T Consensus         2 ~~W~~~~~~~~C~~C~~-~F~~~~rk~hCr~CG~i~C~~C~~~~~~~~~~~~~~p~rvC~~C~~~~~   67 (68)
T smart00064        2 PHWIPDEEVSNCMGCGK-EFNLTKRRHHCRNCGRIFCSKCSSKKAPLPKLGIERPVRVCDDCYENLS   67 (68)
T ss_pred             CCCcCCCCCCcCcccCc-cccCcccccccccCCCCcChHHcCCeeecCccCCCCCcEECHHHHHHhc
Confidence            68999999999999999 9999999999999999999999999999998764 79999999999875

The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the

>KOG1818|consensus

Probab=99.56  E-value=8.7e-16  Score=144.89  Aligned_cols=72  Identities=42%  Similarity=1.000  Sum_probs=65.3

Q ss_pred             CCCCCccccCCCCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCC-CCeeeccchHHhhcccccCC
Q psy8222          50 ATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSA-KPLRVCLTCYDVLSRDKTVS  125 (198)
Q Consensus        50 ~~~~~~Wv~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~-~~~RVC~~C~~~l~~~~~~~  125 (198)
                      .+.++.|+   +...|+.|.. .|++++|+||||+||.|||..|+.+...||..|. ++||||+.||+.+...+...
T Consensus       156 ~~~~pdW~---D~~~C~rCr~-~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C~E~l~~~s~~~  228 (634)
T KOG1818|consen  156 AETAPDWI---DSEECLRCRV-KFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSCYELLTRASVGE  228 (634)
T ss_pred             ccCCcccc---cccccceeee-eeeeccccccccccchhhccCccccccCcccccccccceehhhhHHHhhhcccch
Confidence            34578898   4678999999 9999999999999999999999999999999998 99999999999998876653

>KOG4424|consensus

Probab=99.56  E-value=8.3e-15  Score=136.22  Aligned_cols=122  Identities=26%  Similarity=0.517  Sum_probs=99.5

Q ss_pred             CCCcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHHHHHh------cCCCC-----------------CCCCCCccc
Q psy8222           1 MELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRK------SGKKP-----------------AATHAAVWI   57 (198)
Q Consensus         1 ~~~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~~------~g~~~-----------------~~~~~~~Wv   57 (198)
                      +.++|+|.|.+++++.+|.|.|.+||.+|++.|+.+|+.+.+.      .++.+                 .....+.| 
T Consensus       333 ~~~~~tF~~~G~~r~vel~a~t~~ek~eWv~~I~~~Id~~kq~~eTfr~~s~t~~~~~d~~s~~~~~~l~~r~~~~~r~-  411 (623)
T KOG4424|consen  333 EELPHTFILTGKKRGVELQARTEQEKKEWVQAIQDAIDKHKQCRETFRKDSRTPISDNDMKSFSSDYVLGKRKRKAPRR-  411 (623)
T ss_pred             ccCCceEEEecccceEEeecCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhccccccccccccccccccCccc-
Confidence            3579999999999999999999999999999999999876432      12111                 01124456 


Q ss_pred             cCCCCCccccCCccCCCcc-ccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHhhcccccCC
Q psy8222          58 PDNEAAVCMHCKRTQFTVL-SRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRDKTVS  125 (198)
Q Consensus        58 ~d~~~~~C~~C~~~~Fs~~-~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~~~~~~~  125 (198)
                       ++....|+.|.. +|+-. .|||||+.||.|+|+.|+..+..+...+....|||..||..........
T Consensus       412 -~~k~~~c~~c~e-~~~s~t~~R~~~k~~~~vlc~~cs~~~~~l~~~~s~ssrv~~~~~~~~~~a~~s~  478 (623)
T KOG4424|consen  412 -DNKVTSCDSCEE-TFNSITFRRHRCKAKGAVLCDKCSDFMAKLSYDNSRSSRVCMDRYLTPSGAPGSP  478 (623)
T ss_pred             -ccccccchhhcC-chhhHHHhhhhhhhccceeeccccchhhhhcccccchhhhhhhhccCCCCCCCCc
Confidence             778999999999 89754 6899999999999999999998887777799999999999876554433

>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;

Probab=99.53  E-value=4e-15  Score=99.74  Aligned_cols=54  Identities=52%  Similarity=1.204  Sum_probs=50.0

Q ss_pred             CCccccCCccCCCccccccccccCCceEeCCCCCCeeecCC-CCCCCeeeccchHH
Q psy8222          62 AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPS-QSAKPLRVCLTCYD  116 (198)
Q Consensus        62 ~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~-~~~~~~RVC~~C~~  116 (198)
                      +..|+.|.+ .|+++.|+|||+.||.+||..|+..+..++. .+.+++|||..||.
T Consensus         2 ~~~C~~C~~-~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~~~~~~~rvC~~C~~   56 (57)
T cd00065           2 ASSCMGCGK-PFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMGGGKPVRVCDSCYE   56 (57)
T ss_pred             cCcCcccCc-cccCCccccccCcCcCCcChHHcCCeeecCcccCCCccEeChHHhC
Confidence            568999999 9999999999999999999999999998887 46699999999985

>PTZ00303 phosphatidylinositol kinase; Provisional

Probab=99.51  E-value=6.1e-15  Score=140.76  Aligned_cols=69  Identities=38%  Similarity=0.785  Sum_probs=55.1

Q ss_pred             CCCCccccCCC-CCccccCCccCCCcc-----ccccccccCCceEeCCCCCCeee-----cCCCC--C--CCeeeccchH
Q psy8222          51 THAAVWIPDNE-AAVCMHCKRTQFTVL-----SRRHHCRKCGSVVCAPCSNKRFL-----LPSQS--A--KPLRVCLTCY  115 (198)
Q Consensus        51 ~~~~~Wv~d~~-~~~C~~C~~~~Fs~~-----~RrhhCr~CG~vvC~~Cs~~~~~-----lp~~~--~--~~~RVC~~C~  115 (198)
                      .+.+.|++|++ ++.|+.|++ .|+++     .||||||+||.|||..||.++..     ++..+  .  .+.|||+.||
T Consensus       448 LhAPvWqpDDEaSdtC~~C~k-kFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CY  526 (1374)
T PTZ00303        448 LHNPSWQKDDESSDSCPSCGR-AFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCY  526 (1374)
T ss_pred             ccCCCCCCCcccCCcccCcCC-cccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHH
Confidence            46899999998 488999999 99754     69999999999999999998753     22222  1  4678999999


Q ss_pred             Hhhcc
Q psy8222         116 DVLSR  120 (198)
Q Consensus       116 ~~l~~  120 (198)
                      +.+..
T Consensus       527 dq~En  531 (1374)
T PTZ00303        527 KEYET  531 (1374)
T ss_pred             HHHHh
Confidence            76653

>KOG1819|consensus

Probab=99.51  E-value=3.4e-15  Score=137.56  Aligned_cols=65  Identities=40%  Similarity=0.965  Sum_probs=60.8

Q ss_pred             CCCccccCCCCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCC-CCeeecc-----chHHh
Q psy8222          52 HAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSA-KPLRVCL-----TCYDV  117 (198)
Q Consensus        52 ~~~~Wv~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~-~~~RVC~-----~C~~~  117 (198)
                      .+|.|+||.++..||.|.. +|++|+||||||+||.|||+.|+...++||..|. +.+|||.     .||..
T Consensus       891 sppawipd~~a~~cmacq~-pf~afrrrhhcrncggifcg~cs~asapip~~gl~ka~rvcrpqsnldc~~r  961 (990)
T KOG1819|consen  891 SPPAWIPDEDAEQCMACQM-PFNAFRRRHHCRNCGGIFCGKCSCASAPIPEHGLDKAPRVCRPQSNLDCLTR  961 (990)
T ss_pred             CCcccCCCCcchhhhhccC-cHHHHHHhhhhcccCceeecccccCCCCCcccccccCceecCCcccccceee
Confidence            3678999999999999998 9999999999999999999999999999999987 9999999     78754

>KOG1841|consensus

Probab=99.17  E-value=1.1e-11  Score=122.01  Aligned_cols=64  Identities=41%  Similarity=0.831  Sum_probs=58.1

Q ss_pred             CCCCCccccCCCCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCCCCeeeccch
Q psy8222          50 ATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTC  114 (198)
Q Consensus        50 ~~~~~~Wv~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C  114 (198)
                      ....|.|+||.++..||.|.. .|++++||||||.||+|+|+.|+..++.+........|||..|
T Consensus       545 gkkqP~wvpdse~pncm~clq-kft~ikrrhhcRacgkVlcgvccnek~~leyl~e~~~rv~nV~  608 (1287)
T KOG1841|consen  545 GKKQPSWVPDSEAPNCMDCLQ-KFTPIKRRHHCRACGKVLCGVCCNEKSALEYLSESEGRVSNVD  608 (1287)
T ss_pred             CCCCCccCccccCchHHHHHh-hcccccccccchhccceeehhhcchhhhhhhcCcccccccccc
Confidence            345789999999999999999 9999999999999999999999999998888777777888777

>KOG1842|consensus

Probab=99.14  E-value=9.4e-12  Score=113.10  Aligned_cols=71  Identities=37%  Similarity=0.847  Sum_probs=56.9

Q ss_pred             CCCCCccccCCCCCccccCCccCCCccccccccccCCceEeCCCCCCee----------e------cCC-------CCCC
Q psy8222          50 ATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRF----------L------LPS-------QSAK  106 (198)
Q Consensus        50 ~~~~~~Wv~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~----------~------lp~-------~~~~  106 (198)
                      +.....|+.|..+..|..|.. +|++++||||||.||.|+|.+|+..--          .      .|.       ....
T Consensus       168 EqsvVpW~DDs~V~~CP~Ca~-~F~l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~  246 (505)
T KOG1842|consen  168 EQSVVPWLDDSSVQFCPECAN-SFGLTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQ  246 (505)
T ss_pred             HhccccccCCCcccccccccc-hhhhHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChh
Confidence            445678999999999999999 999999999999999999999987521          0      000       1225


Q ss_pred             CeeeccchHHhhccc
Q psy8222         107 PLRVCLTCYDVLSRD  121 (198)
Q Consensus       107 ~~RVC~~C~~~l~~~  121 (198)
                      +.|+|..|...|...
T Consensus       247 ~iRlC~hCl~~L~~R  261 (505)
T KOG1842|consen  247 PIRLCMHCLDNLFRR  261 (505)
T ss_pred             HhHHHHHHHHHHHHH
Confidence            689999999887653

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=99.06  E-value=3.2e-10  Score=85.67  Aligned_cols=41  Identities=68%  Similarity=1.107  Sum_probs=39.0

Q ss_pred             CCcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHHHHH
Q psy8222           2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLR   42 (198)
Q Consensus         2 ~~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~   42 (198)
                      .++|+|+|.+++|||+|+|+|++||++||++|++||+++|.
T Consensus        63 ~~~n~f~I~~~~kSf~v~A~s~~eK~eWl~~i~~ai~~~l~  103 (104)
T cd01218          63 IERNGWIIKTPTKSFAVYAATETEKREWMLHINKCVTDLLE  103 (104)
T ss_pred             cccceEEEecCCeEEEEEcCCHHHHHHHHHHHHHHHHHHhc
Confidence            47899999999999999999999999999999999999875

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=98.82  E-value=7.2e-09  Score=77.51  Aligned_cols=37  Identities=27%  Similarity=0.472  Sum_probs=35.5

Q ss_pred             CCcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         2 ~~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      .++|.|+|.+++|||.|+|+|++||++||++|++||+
T Consensus        62 ~~~~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~   98 (99)
T cd01220          62 GVPHCFTIFGGQCAITVAASTRAEKEKWLADLSKAIA   98 (99)
T ss_pred             CCceeEEEEcCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence            4789999999999999999999999999999999986

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=98.72  E-value=1.9e-08  Score=75.04  Aligned_cols=37  Identities=24%  Similarity=0.507  Sum_probs=35.4

Q ss_pred             CCcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         2 ~~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      .++|+|.|.+++++|+|+|.|++||++||++|+.+|+
T Consensus        64 ~~~~~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i~  100 (101)
T cd01219          64 ERPHSFLVSGKQRCLELQARTQKEKNDWVQAIFSIID  100 (101)
T ss_pred             CcCceEEEecCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence            4789999999999999999999999999999999986

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG1843|consensus

Probab=98.54  E-value=4.1e-08  Score=88.96  Aligned_cols=69  Identities=20%  Similarity=0.204  Sum_probs=59.5

Q ss_pred             CCCCccccCCCCCccccCCccCCCcc-ccccccccCCceEeCCCCCCeeecCCC--CCCCeeeccchHHhhcc
Q psy8222          51 THAAVWIPDNEAAVCMHCKRTQFTVL-SRRHHCRKCGSVVCAPCSNKRFLLPSQ--SAKPLRVCLTCYDVLSR  120 (198)
Q Consensus        51 ~~~~~Wv~d~~~~~C~~C~~~~Fs~~-~RrhhCr~CG~vvC~~Cs~~~~~lp~~--~~~~~RVC~~C~~~l~~  120 (198)
                      -.+|.|.+++....||.|.. +|+.+ -||||||.|+.++|..|+..+..+|..  -..+.|||+.|+..+..
T Consensus       149 ~~ap~f~yskskglfagvSv-egsaI~erR~anR~~yg~~cra~~ilsg~vp~p~a~d~l~RVldS~~~nl~~  220 (473)
T KOG1843|consen  149 GEAPVFLYSKSKGLFAGVSV-EGSAIIERREANRKFYGIFCRAKSILSGLVPVPFAADPLQRVLDSCAFNLES  220 (473)
T ss_pred             CcCccccccccccceeeeec-ccceeeecchhhhhhcCccchhhhhhccCCCCCcccCCHHHHHhhHhhccCC
Confidence            34889999999999999999 99976 599999999999999999887555443  45899999999999843

>KOG1409|consensus

Probab=98.42  E-value=6.2e-08  Score=86.40  Aligned_cols=69  Identities=33%  Similarity=0.816  Sum_probs=57.4

Q ss_pred             CCCCccccCCCCCccccCCccCCCc-----------cccccccccCCceEeCCCCCCeeecCCCCC-CCeeeccchHHhh
Q psy8222          51 THAAVWIPDNEAAVCMHCKRTQFTV-----------LSRRHHCRKCGSVVCAPCSNKRFLLPSQSA-KPLRVCLTCYDVL  118 (198)
Q Consensus        51 ~~~~~Wv~d~~~~~C~~C~~~~Fs~-----------~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~-~~~RVC~~C~~~l  118 (198)
                      ...|.|+.   ...|..|.. +|..           -.|.||||.||..||..|+.++...|..|. -.+|+|+.||..+
T Consensus       274 ~etpewl~---s~~cQ~c~q-pffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i  349 (404)
T KOG1409|consen  274 VETPEWLD---SDSCQKCNQ-PFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTI  349 (404)
T ss_pred             ecCccccc---cchhhhhCc-hHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhh
Confidence            34688985   568999998 7743           136799999999999999999999998877 7899999999998


Q ss_pred             ccccc
Q psy8222         119 SRDKT  123 (198)
Q Consensus       119 ~~~~~  123 (198)
                      ....+
T Consensus       350 ~~~~~  354 (404)
T KOG1409|consen  350 KDEER  354 (404)
T ss_pred             hcCCC
Confidence            76544

>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain

Probab=98.38  E-value=5.8e-07  Score=67.48  Aligned_cols=37  Identities=11%  Similarity=0.200  Sum_probs=35.0

Q ss_pred             CCcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         2 ~~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      .++|+|.|.++.+||.++|+|+++|.+||++|++|++
T Consensus        63 ~~kNafki~t~~~s~i~qaes~~~K~eWl~~le~a~~   99 (100)
T cd01226          63 NAKKVLKLLIFPESRIYQCESARIKTEWFEELEQAKR   99 (100)
T ss_pred             CcCceEEEEeCCccEEEEeCCHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999999999999863

Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain

Probab=98.37  E-value=5.8e-07  Score=68.80  Aligned_cols=37  Identities=27%  Similarity=0.407  Sum_probs=33.9

Q ss_pred             CCcceEEEecC-CeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           2 ELRNGWLIQTS-SKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         2 ~~~n~f~i~t~-~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      .++|+|+|.+. ++||+|+|.|++||++||++|..++.
T Consensus        73 ~~knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~  110 (112)
T cd01261          73 EYKNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQT  110 (112)
T ss_pred             ccCceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHhc
Confidence            47999999985 79999999999999999999998875

Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1811|consensus

Probab=98.10  E-value=2e-07  Score=88.49  Aligned_cols=66  Identities=35%  Similarity=0.766  Sum_probs=56.7

Q ss_pred             CccccCC----CCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCC-CCCeeeccchHHhhc
Q psy8222          54 AVWIPDN----EAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQS-AKPLRVCLTCYDVLS  119 (198)
Q Consensus        54 ~~Wv~d~----~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~-~~~~RVC~~C~~~l~  119 (198)
                      .+|+||.    .-..||.|.++.|..|+||||||.||..+|+.|...+......+ ..|.++|+.|+.+..
T Consensus       314 ~nfq~darrafs~a~~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~gse~~Adg~Dq~psvsi  384 (1141)
T KOG1811|consen  314 HNFQPDARRAFSEAICMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDCGSENPADGCDQCPSVSI  384 (1141)
T ss_pred             hhcChhhhhhhhhhHHHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhcccccCcccccccccchhh
Confidence            4789887    55679987776999999999999999999999999988777776 499999999997544

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=98.06  E-value=6.1e-06  Score=62.08  Aligned_cols=35  Identities=23%  Similarity=0.513  Sum_probs=32.5

Q ss_pred             CcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCI   37 (198)
Q Consensus         3 ~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i   37 (198)
                      .+|.|.|.+|.|+|+|+|.|++|+++||++|+.|+
T Consensus        67 ~~~~Fei~tp~rt~~l~A~se~e~e~WI~~i~~a~  101 (101)
T cd01264          67 LPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIAV  101 (101)
T ss_pred             cCcEEEEEcCCceEEEEeCCHHHHHHHHHHHHhhC
Confidence            46999999999999999999999999999998763

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=97.91  E-value=1.8e-05  Score=59.17  Aligned_cols=34  Identities=21%  Similarity=0.502  Sum_probs=32.4

Q ss_pred             ceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           5 NGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         5 n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      +.|.|.++.+.|.+.|.|++|+++||++|+.++.
T Consensus        68 ~~F~i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~  101 (103)
T cd01251          68 YGVTLVTPERKFLFACETEQDRREWIAAFQNVLS  101 (103)
T ss_pred             ceEEEEeCCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence            4899999999999999999999999999999876

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain

Probab=97.85  E-value=1.6e-05  Score=58.98  Aligned_cols=27  Identities=26%  Similarity=0.497  Sum_probs=24.8

Q ss_pred             ecCCeEEEEEeCChHHHHHHHHHHHHH
Q psy8222          10 QTSSKSFAVHAATSTEKQEWMAHINKC   36 (198)
Q Consensus        10 ~t~~KSf~v~A~s~~Ek~~Wi~~i~~~   36 (198)
                      .++.|||.|+|+|..||.+||+||++.
T Consensus        67 ~~~~KSf~~~asS~~Er~eW~~hI~~~   93 (96)
T cd01228          67 NKNGKSYTFLLSSDYERSEWRESIQKL   93 (96)
T ss_pred             ccCCceEEEEecCHHHHHHHHHHHHHH
Confidence            468999999999999999999999864

BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=97.71  E-value=5.8e-05  Score=55.57  Aligned_cols=33  Identities=12%  Similarity=0.386  Sum_probs=31.3

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKC   36 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~   36 (198)
                      +|.|.|.++++.|.+.|.|++|+++||++|+.+
T Consensus        61 ~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~~   93 (95)
T cd01265          61 KGRFEIHSNNEVIALKASSDKQMNYWLQALQSK   93 (95)
T ss_pred             CCEEEEEcCCcEEEEECCCHHHHHHHHHHHHhh
Confidence            689999999999999999999999999999875

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=97.61  E-value=0.00011  Score=54.53  Aligned_cols=35  Identities=17%  Similarity=0.338  Sum_probs=32.1

Q ss_pred             CcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCI   37 (198)
Q Consensus         3 ~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i   37 (198)
                      -+|.|.|.++.++|.+.|.|++|+++||++|+..+
T Consensus        64 ~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~   98 (100)
T cd01233          64 GPNTFAVCTKHRGYLFQALSDKEMIDWLYALNPLY   98 (100)
T ss_pred             CCcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence            36899999999999999999999999999997654

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=97.50  E-value=0.00014  Score=54.35  Aligned_cols=32  Identities=13%  Similarity=0.305  Sum_probs=30.3

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINK   35 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~   35 (198)
                      +|.|+|.++.+.|+|.|.+++|+++||.+|++
T Consensus        66 ~~~fqivt~~r~~yi~a~s~~E~~~Wi~al~k   97 (98)
T cd01244          66 VDIITIVCEDDTMQLQFEAPVEATDWLNALEK   97 (98)
T ss_pred             CceEEEEeCCCeEEEECCCHHHHHHHHHHHhc
Confidence            58999999999999999999999999999975

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=97.45  E-value=0.00027  Score=52.74  Aligned_cols=34  Identities=12%  Similarity=0.289  Sum_probs=30.6

Q ss_pred             cceEEEecCC---eEEEEEeCChHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSS---KSFAVHAATSTEKQEWMAHINKCI   37 (198)
Q Consensus         4 ~n~f~i~t~~---KSf~v~A~s~~Ek~~Wi~~i~~~i   37 (198)
                      +++|.|.+..   .++.++|.|.++|+.||++|+.+|
T Consensus        59 ~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i   95 (97)
T cd01222          59 PLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM   95 (97)
T ss_pred             CcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence            7899997654   699999999999999999999876

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=97.43  E-value=0.00024  Score=53.29  Aligned_cols=32  Identities=25%  Similarity=0.393  Sum_probs=30.1

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINK   35 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~   35 (198)
                      +|.|.|.|+.++|.|.|.|++|+++|+++|.+
T Consensus        69 ~~~f~i~t~dr~f~l~aese~E~~~Wi~~i~~  100 (101)
T cd01257          69 RHLIALYTRDEYFAVAAENEAEQDSWYQALLE  100 (101)
T ss_pred             CeEEEEEeCCceEEEEeCCHHHHHHHHHHHhh
Confidence            58999999999999999999999999999864

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=97.41  E-value=0.00026  Score=53.45  Aligned_cols=31  Identities=23%  Similarity=0.276  Sum_probs=29.4

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHIN   34 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~   34 (198)
                      +|.|.|.++.+.|+|.|.|++|+++||..|.
T Consensus        71 ~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~  101 (104)
T cd01236          71 KFSICILTPDKEHFIKAETKEEISWWLNMLM  101 (104)
T ss_pred             ccEEEEECCCceEEEEeCCHHHHHHHHHHHH
Confidence            4799999999999999999999999999986

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=97.33  E-value=0.00032  Score=51.16  Aligned_cols=33  Identities=27%  Similarity=0.547  Sum_probs=30.2

Q ss_pred             ceEEEecCCeEEEEEeCChHHHHHHHHHHHHHH
Q psy8222           5 NGWLIQTSSKSFAVHAATSTEKQEWMAHINKCI   37 (198)
Q Consensus         5 n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i   37 (198)
                      +.|.|.++.+.|.|+|.+++|+++||.+|+.+|
T Consensus        69 ~~f~i~t~~r~~~~~a~s~~e~~~Wi~ai~~~i  101 (101)
T cd01235          69 GFFDLKTSKRTYNFLAENINEAQRWKEKIQQCI  101 (101)
T ss_pred             eEEEEEeCCceEEEECCCHHHHHHHHHHHHhhC
Confidence            458888999999999999999999999998875

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=97.28  E-value=0.00073  Score=47.72  Aligned_cols=36  Identities=28%  Similarity=0.531  Sum_probs=33.2

Q ss_pred             CCcceEEEecCCe-EEEEEeCChHHHHHHHHHHHHHH
Q psy8222           2 ELRNGWLIQTSSK-SFAVHAATSTEKQEWMAHINKCI   37 (198)
Q Consensus         2 ~~~n~f~i~t~~K-Sf~v~A~s~~Ek~~Wi~~i~~~i   37 (198)
                      ..+|.|.|.++.. +|.|.|.|+++++.|+++|+.++
T Consensus        67 ~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~  103 (104)
T PF00169_consen   67 KRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI  103 (104)
T ss_dssp             SSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence            4679999999996 99999999999999999999886

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=97.27  E-value=0.0004  Score=52.11  Aligned_cols=32  Identities=13%  Similarity=0.365  Sum_probs=30.0

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINK   35 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~   35 (198)
                      ++.|.|.++.+.|++.|.+++|+++||++|+.
T Consensus        74 ~~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~  105 (106)
T cd01238          74 KYPFQVVHDEGTLYVFAPTEELRKRWIKALKQ  105 (106)
T ss_pred             CccEEEEeCCCeEEEEcCCHHHHHHHHHHHHh
Confidence            67899999999999999999999999999975

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=97.22  E-value=0.00051  Score=48.59  Aligned_cols=33  Identities=21%  Similarity=0.478  Sum_probs=30.6

Q ss_pred             cceEEEecCC-eEEEEEeCChHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKC   36 (198)
Q Consensus         4 ~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~   36 (198)
                      +|.|.|.+++ +.|.+.|.+.+|+.+||.+|+.|
T Consensus        58 ~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a   91 (91)
T cd01246          58 DKCFTIDTGGDKTLHLRANSEEERQRWVDALELA   91 (91)
T ss_pred             CcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHhC
Confidence            6899999998 99999999999999999999764

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0230|consensus

Probab=97.19  E-value=0.00041  Score=71.46  Aligned_cols=54  Identities=35%  Similarity=0.905  Sum_probs=41.7

Q ss_pred             CCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHhhcccccCCC
Q psy8222          62 AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRDKTVSG  126 (198)
Q Consensus        62 ~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~~~~~~~~  126 (198)
                      ...|..|.    +.++|+|||+.||++||+.|...       .....|||..|+...........
T Consensus         5 ~~~~~~~~----t~~~~~~~~~~~g~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~   58 (1598)
T KOG0230|consen    5 SNVCYDCD----TSVNRRHHCRVCGRVFCSKCQDS-------PETSIRVCNECRGQWEQGNVAPS   58 (1598)
T ss_pred             ccchhccc----cccccCCCCcccCceeccccCCC-------CccceeehhhhhhhccccCCCCc
Confidence            45566666    57899999999999999999832       22489999999998776554443

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=97.19  E-value=0.00052  Score=49.93  Aligned_cols=33  Identities=21%  Similarity=0.405  Sum_probs=30.5

Q ss_pred             cceEEEecCC-eEEEEEeCChHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKC   36 (198)
Q Consensus         4 ~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~   36 (198)
                      +|.|.|.++. +.|.|.|.+++|.++||.+|+.|
T Consensus        63 ~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~~   96 (96)
T cd01260          63 KYAFKVCHPVYKSFYFAAETLDDLSQWVNHLITA   96 (96)
T ss_pred             ceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence            5789999999 99999999999999999999764

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=97.18  E-value=0.00077  Score=49.36  Aligned_cols=32  Identities=19%  Similarity=0.360  Sum_probs=28.6

Q ss_pred             cceEEEecCC-eEEEEEeCChHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSS-KSFAVHAATSTEKQEWMAHINK   35 (198)
Q Consensus         4 ~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~   35 (198)
                      ++.|.|.++. +.|.|.|.+++|+++||++|+.
T Consensus        58 ~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~~   90 (91)
T cd01247          58 ENRFDISVNENVVWYLRAENSQSRLLWMDSVVR   90 (91)
T ss_pred             CCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHhh
Confidence            4789997666 9999999999999999999974

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A

Probab=97.07  E-value=0.0004  Score=53.25  Aligned_cols=52  Identities=25%  Similarity=0.652  Sum_probs=41.5

Q ss_pred             CCCccccCCccCCCcc-ccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHhhc
Q psy8222          61 EAAVCMHCKRTQFTVL-SRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLS  119 (198)
Q Consensus        61 ~~~~C~~C~~~~Fs~~-~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~  119 (198)
                      ....|..|.+ +|+++ ++.+.|..|++.||..|...      ....+.-+|..|+....
T Consensus        53 ~~~~C~~C~~-~fg~l~~~~~~C~~C~~~VC~~C~~~------~~~~~~WlC~vC~k~re  105 (118)
T PF02318_consen   53 GERHCARCGK-PFGFLFNRGRVCVDCKHRVCKKCGVY------SKKEPIWLCKVCQKQRE  105 (118)
T ss_dssp             CCSB-TTTS--BCSCTSTTCEEETTTTEEEETTSEEE------TSSSCCEEEHHHHHHHH
T ss_pred             CCcchhhhCC-cccccCCCCCcCCcCCccccCccCCc------CCCCCCEEChhhHHHHH
Confidence            3468999999 99988 58999999999999999765      23478899999997543

The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=97.05  E-value=0.0011  Score=49.70  Aligned_cols=32  Identities=25%  Similarity=0.351  Sum_probs=29.2

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINK   35 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~   35 (198)
                      ...|.|.++.++|.|.|.|++|+++||.+|.+
T Consensus        75 ~~~f~i~t~~r~y~l~A~s~ee~~~Wi~~I~~  106 (108)
T cd01266          75 GYGFDIETIVRDLYLVAKNEEEMTLWVNCICK  106 (108)
T ss_pred             ceEEEEEeCCccEEEEECCHHHHHHHHHHHHh
Confidence            34699999999999999999999999999965

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=96.99  E-value=0.001  Score=47.30  Aligned_cols=32  Identities=19%  Similarity=0.525  Sum_probs=30.1

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINK   35 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~   35 (198)
                      ++.|.|.++.+.|.|.|.+.++.++|+.+|+.
T Consensus        62 ~~~f~i~~~~~~~~f~a~s~~~~~~Wi~al~~   93 (94)
T cd01250          62 RFCFEVISPTKTWHFQADSEEERDDWISAIQE   93 (94)
T ss_pred             ceEEEEEcCCcEEEEECCCHHHHHHHHHHHhc
Confidence            67899999999999999999999999999975

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01223 PH_Vav Vav pleckstrin homology (PH) domain

Probab=96.97  E-value=0.0012  Score=50.86  Aligned_cols=39  Identities=10%  Similarity=0.415  Sum_probs=34.5

Q ss_pred             CCcceEEEecCC--eEEEEEeCChHHHHHHHHHHHHHHHHH
Q psy8222           2 ELRNGWLIQTSS--KSFAVHAATSTEKQEWMAHINKCIEDL   40 (198)
Q Consensus         2 ~~~n~f~i~t~~--KSf~v~A~s~~Ek~~Wi~~i~~~i~~l   40 (198)
                      .++|+|.|...+  .+|.++|.|+++|+.||++|..|++.+
T Consensus        74 ~~~~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sni  114 (116)
T cd01223          74 RWKYGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSNI  114 (116)
T ss_pred             ceEEEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhcC
Confidence            478899998776  789999999999999999999998753

Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain

Probab=96.95  E-value=0.0015  Score=49.83  Aligned_cols=33  Identities=15%  Similarity=0.362  Sum_probs=29.7

Q ss_pred             CcceEEEecCC--eEEEEEeCChHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS--KSFAVHAATSTEKQEWMAHINK   35 (198)
Q Consensus         3 ~~n~f~i~t~~--KSf~v~A~s~~Ek~~Wi~~i~~   35 (198)
                      .+|+|.|...+  ++|.++|.|+++|..||++|..
T Consensus        71 ~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~  105 (109)
T cd01224          71 IKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFAL  105 (109)
T ss_pred             eEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHH
Confidence            58999999665  9999999999999999999864

Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain

Probab=96.81  E-value=0.0025  Score=48.85  Aligned_cols=36  Identities=19%  Similarity=0.357  Sum_probs=29.5

Q ss_pred             CcceEEEecCC---eEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS---KSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         3 ~~n~f~i~t~~---KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      ++.++.+.++.   ++|.|+|+|.++|++|+.+|+++++
T Consensus        75 ~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~  113 (114)
T cd01232          75 CRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ  113 (114)
T ss_pred             ceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence            34455556665   8999999999999999999998765

Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>smart00233 PH Pleckstrin homology domain

Probab=96.75  E-value=0.0038  Score=43.04  Aligned_cols=35  Identities=26%  Similarity=0.567  Sum_probs=32.3

Q ss_pred             CcceEEEecCCe-EEEEEeCChHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSSK-SFAVHAATSTEKQEWMAHINKCI   37 (198)
Q Consensus         3 ~~n~f~i~t~~K-Sf~v~A~s~~Ek~~Wi~~i~~~i   37 (198)
                      ..+.|.|..+++ .|.+.|.|++|+..|+.+|+.++
T Consensus        66 ~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~~  101 (102)
T smart00233       66 KPHCFEIKTADRRSYLLQAESEEEREEWVDALRKAI  101 (102)
T ss_pred             CceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence            578999998888 99999999999999999998775

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=96.62  E-value=0.0027  Score=47.48  Aligned_cols=31  Identities=13%  Similarity=0.363  Sum_probs=27.7

Q ss_pred             cceEEEecCCe--EEEEEeCChHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSK--SFAVHAATSTEKQEWMAHINK   35 (198)
Q Consensus         4 ~n~f~i~t~~K--Sf~v~A~s~~Ek~~Wi~~i~~   35 (198)
                      +|-|+|.++.+  .|.+.|++ +|+++||+.|++
T Consensus        65 ~~cFel~~~~~~~~y~~~a~~-~er~~Wi~~l~~   97 (98)
T cd01245          65 PNCFQIVERALPTVYYSCRSS-EERDKWIESLQA   97 (98)
T ss_pred             CeEEEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence            59999999987  88888888 999999999874

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd00821 PH Pleckstrin homology (PH) domain

Probab=96.47  E-value=0.0053  Score=41.88  Aligned_cols=33  Identities=24%  Similarity=0.596  Sum_probs=30.5

Q ss_pred             CcceEEEecCC-eEEEEEeCChHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINK   35 (198)
Q Consensus         3 ~~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~   35 (198)
                      .++.|.|.+.. +++.+.|.|.+|++.|+.+|+.
T Consensus        62 ~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~   95 (96)
T cd00821          62 RKNCFEIRTPDGRSYLLQAESEEEREEWIEALQS   95 (96)
T ss_pred             CCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhc
Confidence            47899999888 9999999999999999999975

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=96.37  E-value=0.0052  Score=45.66  Aligned_cols=31  Identities=26%  Similarity=0.675  Sum_probs=25.5

Q ss_pred             cceEEEe------cCCeEEEEEeCChHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQ------TSSKSFAVHAATSTEKQEWMAHINKC   36 (198)
Q Consensus         4 ~n~f~i~------t~~KSf~v~A~s~~Ek~~Wi~~i~~~   36 (198)
                      +|.|.|.      ++.+.|  +|.|++|+++||++|+.+
T Consensus        65 ~~~F~i~~~~~~~~~~r~f--~a~s~ee~~eWi~ai~~v  101 (102)
T cd01241          65 PNTFIIRCLQWTTVIERTF--HVESPEEREEWIHAIQTV  101 (102)
T ss_pred             cceEEEEeccCCcccCEEE--EeCCHHHHHHHHHHHHhh
Confidence            5789997      345666  589999999999999865

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=96.21  E-value=0.011  Score=45.33  Aligned_cols=26  Identities=27%  Similarity=0.552  Sum_probs=23.6

Q ss_pred             eEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222          14 KSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus        14 KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      +.|.|.|.+.+|+++||++|+.++..
T Consensus        90 ~~~~~~A~s~~e~~~Wi~al~~~~~~  115 (125)
T cd01252          90 SVYRISAANDEEMDEWIKSIKASISP  115 (125)
T ss_pred             eEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            58889999999999999999998863

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0230|consensus

Probab=96.07  E-value=0.0022  Score=66.32  Aligned_cols=34  Identities=38%  Similarity=1.250  Sum_probs=33.0

Q ss_pred             ccCCCCCccccCCccCCCccccccccccCCceEeCCC
Q psy8222          57 IPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPC   93 (198)
Q Consensus        57 v~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~C   93 (198)
                      +||.....|..|.+ .|+-|+|+|||  ||+++|..|
T Consensus        92 m~d~s~~ec~~~~~-~~~t~Rr~~~~--~gqi~~ss~  125 (1598)
T KOG0230|consen   92 MPDSSSKECYDCEQ-KFETFRRKHHC--CGQIFCSSC  125 (1598)
T ss_pred             CCccccchhhhhcc-chhhhhccccc--CccccCCcc
Confidence            78889999999999 99999999999  999999999

>KOG1841|consensus

Probab=95.99  E-value=0.011  Score=59.91  Aligned_cols=57  Identities=32%  Similarity=0.438  Sum_probs=49.9

Q ss_pred             CCCCccccCCCCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHhhcc
Q psy8222          51 THAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSR  120 (198)
Q Consensus        51 ~~~~~Wv~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~~  120 (198)
                      +.+++|++|+.+..|+.|.+ .|.+..++||||  |.++          +-+.+.+..|+|..|...+.+
T Consensus       646 e~ksVw~aDg~aPng~la~t-~~~~~~e~~hsr--~~ls----------~~~~s~~~~~~~n~t~s~~rn  702 (1287)
T KOG1841|consen  646 EVKSVWFADGIAPNGELAET-RFTFTGERHHSR--GKLS----------LLYSSRKEARPCNITHSVLRN  702 (1287)
T ss_pred             eecceeccCCcCCCceeccc-ceeeeccccccc--cccc----------ccccccccCCCCcccCccchh
Confidence            56889999999999999998 999999999999  7776          344466889999999998776

>cd00900 PH-like Pleckstrin homology-like domain

Probab=95.75  E-value=0.018  Score=39.53  Aligned_cols=33  Identities=27%  Similarity=0.481  Sum_probs=30.4

Q ss_pred             CcceEEEecC---CeEEEEEeCChHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTS---SKSFAVHAATSTEKQEWMAHINK   35 (198)
Q Consensus         3 ~~n~f~i~t~---~KSf~v~A~s~~Ek~~Wi~~i~~   35 (198)
                      .++.|.|...   .+.+.+.|.+.+|++.|+.+|+.
T Consensus        63 ~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~   98 (99)
T cd00900          63 DPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQ   98 (99)
T ss_pred             CCceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhc
Confidence            4689999988   79999999999999999999975

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=95.55  E-value=0.019  Score=42.21  Aligned_cols=32  Identities=13%  Similarity=0.379  Sum_probs=28.2

Q ss_pred             cceEEEecCC-eEEEEEeCChHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSS-KSFAVHAATSTEKQEWMAHINK   35 (198)
Q Consensus         4 ~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~   35 (198)
                      +|.|.|.++. +.|.+.|.+.++..+|+.+|+.
T Consensus        71 ~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~  103 (104)
T cd01253          71 KHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS  103 (104)
T ss_pred             ceEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence            5889997555 9999999999999999999974

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=95.40  E-value=0.037  Score=42.55  Aligned_cols=37  Identities=19%  Similarity=0.385  Sum_probs=32.9

Q ss_pred             CcceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus         3 ~~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      -+|.|.|.++. +.|.++|.+.+|.+.|+.+|+.+...
T Consensus        76 r~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~  113 (117)
T cd01230          76 KPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAA  113 (117)
T ss_pred             CCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            36899999986 99999999999999999999987653

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain

Probab=94.51  E-value=0.068  Score=40.88  Aligned_cols=34  Identities=24%  Similarity=0.439  Sum_probs=30.7

Q ss_pred             CcceEEEecCC-eEEEEEeCChHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKC   36 (198)
Q Consensus         3 ~~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~   36 (198)
                      -+|+|+|.++- -...|++++.+|.++|+.++++.
T Consensus        74 ~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~~~  108 (111)
T cd01225          74 LKNAFEISGPLIERIVVVCNNPQDAQEWVELLNAN  108 (111)
T ss_pred             ccceEEEeccCcCcEEEEeCCHHHHHHHHHHHHhh
Confidence            36999999888 88999999999999999999864

Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=94.14  E-value=0.068  Score=40.45  Aligned_cols=30  Identities=10%  Similarity=0.379  Sum_probs=26.7

Q ss_pred             ceEEEecCCe--EEEEEeCChHHHHHHHHHHH
Q psy8222           5 NGWLIQTSSK--SFAVHAATSTEKQEWMAHIN   34 (198)
Q Consensus         5 n~f~i~t~~K--Sf~v~A~s~~Ek~~Wi~~i~   34 (198)
                      .=|.|.++.+  ++.|+|.|+.++.+||++|.
T Consensus        71 FCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~d  102 (104)
T cd01249          71 FCFDVEVEEKPGVITMQALSEKDRRLWIEAMD  102 (104)
T ss_pred             eeEeeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence            4588988887  99999999999999999985

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG1729|consensus

Probab=92.76  E-value=0.022  Score=50.26  Aligned_cols=64  Identities=28%  Similarity=0.479  Sum_probs=49.1

Q ss_pred             CCccccCCCCCccccCCccCCCccccccccccCCceEeCCCCCCe----eecCCC---CCCCeeeccchHHh
Q psy8222          53 AAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKR----FLLPSQ---SAKPLRVCLTCYDV  117 (198)
Q Consensus        53 ~~~Wv~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~----~~lp~~---~~~~~RVC~~C~~~  117 (198)
                      .+.|+-+.++..|..|.. .|.+..|+|||+.||+|+|..|+..+    .+-+..   -......|..|+..
T Consensus        11 ~~~~~~~~e~~s~~~~~~-e~~~~~r~~~~~~~grv~~~q~~~~k~~rk~~q~r~~~l~~D~~~~~~~~~~~   81 (288)
T KOG1729|consen   11 MVDWQANSEANSCRNCKV-EFCFGRRGHPCRECGRVLCRQGTLVKRCRKKLQSRSFFLFNDILVYGNIVSDN   81 (288)
T ss_pred             hHHHHHhccchhhhhhcc-cchhhhccCcccccchhhhhhhhhHHHHhcccccccccccccchhhcccccCH
Confidence            456888889999999998 99999999999999999999998721    111111   12566777777765

>KOG0690|consensus

Probab=91.90  E-value=0.28  Score=44.80  Aligned_cols=40  Identities=20%  Similarity=0.364  Sum_probs=31.1

Q ss_pred             cceEEEecCC----eEEEEEeCChHHHHHHHHHHHHHHHHHHHh
Q psy8222           4 RNGWLIQTSS----KSFAVHAATSTEKQEWMAHINKCIEDLLRK   43 (198)
Q Consensus         4 ~n~f~i~t~~----KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~~   43 (198)
                      ||.|.|+--+    -.-.+++.|++||++|+.+|+..-+.+.+.
T Consensus        79 PntFiiRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l~q~  122 (516)
T KOG0690|consen   79 PNTFIIRCLQWTTVIERTFYVESAEERQEWIEAIQAVSNRLKQE  122 (516)
T ss_pred             CceEEEEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhhhhh
Confidence            7999999544    233467899999999999999877766543

>KOG0521|consensus

Probab=91.68  E-value=0.28  Score=48.96  Aligned_cols=39  Identities=23%  Similarity=0.462  Sum_probs=35.9

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLR   42 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~   42 (198)
                      +--|+|.+++|++.++|.+..+..+||..|++.|..++.
T Consensus       335 r~CF~iiS~tks~~lQAes~~d~~~Wi~~i~nsi~s~l~  373 (785)
T KOG0521|consen  335 RFCFEIISPTKSYLLQAESEKDCQDWISALQNSILSALN  373 (785)
T ss_pred             eeeEEEecCCcceEEecCchhHHHHHHHHHHHHHHHHHh
Confidence            456999999999999999999999999999999988765

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=91.39  E-value=0.46  Score=36.08  Aligned_cols=33  Identities=9%  Similarity=0.164  Sum_probs=27.8

Q ss_pred             cceEEEecCC----eEEEEEeCChHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSS----KSFAVHAATSTEKQEWMAHINKC   36 (198)
Q Consensus         4 ~n~f~i~t~~----KSf~v~A~s~~Ek~~Wi~~i~~~   36 (198)
                      .+.|.|.+|.    +.|.|.|.|+++.+.||++.+-|
T Consensus        66 kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rla  102 (106)
T cd01237          66 KFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRLA  102 (106)
T ss_pred             ceEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHHh
Confidence            3566666887    99999999999999999998654

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain

Probab=91.34  E-value=0.7  Score=36.39  Aligned_cols=36  Identities=22%  Similarity=0.408  Sum_probs=28.5

Q ss_pred             eEEEe--cCCeEEEEEeCChHHHHHHHHHHHHHHHHHH
Q psy8222           6 GWLIQ--TSSKSFAVHAATSTEKQEWMAHINKCIEDLL   41 (198)
Q Consensus         6 ~f~i~--t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll   41 (198)
                      .|.|-  .....|.|+|.|.+.|+.|+..|.+.+...+
T Consensus        82 kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q~  119 (133)
T cd01227          82 KFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTSQL  119 (133)
T ss_pred             EEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence            45444  3346899999999999999999998887643

Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0705|consensus

Probab=90.24  E-value=0.32  Score=46.86  Aligned_cols=37  Identities=22%  Similarity=0.391  Sum_probs=29.0

Q ss_pred             eEEEec-CCeEEEEEeCChHHHHHHHHHHHHHHHHHHH
Q psy8222           6 GWLIQT-SSKSFAVHAATSTEKQEWMAHINKCIEDLLR   42 (198)
Q Consensus         6 ~f~i~t-~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~   42 (198)
                      -|+|.+ ......+.|.+.|||++|+++|+..|..-|+
T Consensus       447 ~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIlaSlq  484 (749)
T KOG0705|consen  447 CFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILASLQ  484 (749)
T ss_pred             eEEEeccccchhhhhhcchhhHHHHHHHHHHHHHHHHh
Confidence            455553 3467778899999999999999998876544

>KOG1117|consensus

Probab=89.96  E-value=0.18  Score=50.39  Aligned_cols=99  Identities=20%  Similarity=0.398  Sum_probs=65.0

Q ss_pred             ceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCCCCccccCCccCCCcccccccccc
Q psy8222           5 NGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRK   84 (198)
Q Consensus         5 n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~~~g~~~~~~~~~~Wv~d~~~~~C~~C~~~~Fs~~~RrhhCr~   84 (198)
                      -.|.|.||-++|.++|.+..||+.|+.+++.+|...|..     -...-..|.... ...|..|+. +=-=    ----+
T Consensus       247 ~sfdl~Tp~r~fsftaese~erq~w~ea~q~siAeTlSd-----~evaeriW~ne~-nr~cadC~s-srPd----wasiN  315 (1186)
T KOG1117|consen  247 RSFDLNTPYREFSFTAESETERQIWGEAPQPSIAETLSD-----YEVAERIWLNEE-NRECADCGS-SRPD----WASIN  315 (1186)
T ss_pred             ceeccCCceeeeeeeeccchhhhhhhhccCcccccccCh-----HHHHHHHHhccc-cccccccCC-CCCc----ccccc
Confidence            478999999999999999999999999999887654321     111224576532 347899987 3210    01113


Q ss_pred             CCceEeCCCCCCeeecCCC-CC-CCeeeccch
Q psy8222          85 CGSVVCAPCSNKRFLLPSQ-SA-KPLRVCLTC  114 (198)
Q Consensus        85 CG~vvC~~Cs~~~~~lp~~-~~-~~~RVC~~C  114 (198)
                      =+-|+|..|....-.++.. +. ++...|..=
T Consensus       316 L~vvIck~caGqhrslgs~dSkvrslkmd~sv  347 (1186)
T KOG1117|consen  316 LCVVICKPCAGQHRSLGSGDSKVRSLKMDPSV  347 (1186)
T ss_pred             cceEEcccCCCccccCCCccccccccccCccc
Confidence            3578999998876554442 22 555555543

>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain

Probab=87.59  E-value=0.91  Score=34.33  Aligned_cols=33  Identities=9%  Similarity=0.418  Sum_probs=28.2

Q ss_pred             cceEEEec-CCeEEEEEeCChHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQT-SSKSFAVHAATSTEKQEWMAHINKC   36 (198)
Q Consensus         4 ~n~f~i~t-~~KSf~v~A~s~~Ek~~Wi~~i~~~   36 (198)
                      .|+|.|.. .+-.|.+.|.++++.+.|+..|+.|
T Consensus        74 ~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~C  107 (107)
T cd01231          74 LYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRYC  107 (107)
T ss_pred             ccEEEEEecCCceEEEEcCCHHHHHHHHHHHhcC
Confidence            58999995 3468889999999999999999764

LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=86.87  E-value=1.4  Score=33.72  Aligned_cols=36  Identities=19%  Similarity=0.408  Sum_probs=29.4

Q ss_pred             CCcceEEEecCC--eEEEEEeCChHHHHHHHHHHHHHH
Q psy8222           2 ELRNGWLIQTSS--KSFAVHAATSTEKQEWMAHINKCI   37 (198)
Q Consensus         2 ~~~n~f~i~t~~--KSf~v~A~s~~Ek~~Wi~~i~~~i   37 (198)
                      ++|-=|.|....  ++..+.|.+..||+.|+.++.+-|
T Consensus        73 DiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~~  110 (112)
T cd01242          73 EIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKKI  110 (112)
T ss_pred             cCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHhc
Confidence            355667887555  899999999999999999987655

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0932|consensus

Probab=86.77  E-value=0.94  Score=43.67  Aligned_cols=35  Identities=23%  Similarity=0.452  Sum_probs=31.2

Q ss_pred             cceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         4 ~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      +|-|++++.. +.|.++|.+.+|.+.||..|+=+..
T Consensus       583 p~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA  618 (774)
T KOG0932|consen  583 PHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAA  618 (774)
T ss_pred             CceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHH
Confidence            6889999888 9999999999999999999975543

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=86.46  E-value=0.39  Score=38.72  Aligned_cols=25  Identities=32%  Similarity=0.721  Sum_probs=18.9

Q ss_pred             ccccCCccCCC------------ccccccccccCCceE
Q psy8222          64 VCMHCKRTQFT------------VLSRRHHCRKCGSVV   89 (198)
Q Consensus        64 ~C~~C~~~~Fs------------~~~RrhhCr~CG~vv   89 (198)
                      .|+.|+. +++            +++|+++|++||..|
T Consensus         2 ~cp~c~~-~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f   38 (154)
T PRK00464          2 RCPFCGH-PDTRVIDSRPAEDGNAIRRRRECLACGKRF   38 (154)
T ss_pred             cCCCCCC-CCCEeEeccccCCCCceeeeeeccccCCcc
Confidence            5888887 771            456679999998876

>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function

Probab=85.85  E-value=2  Score=32.83  Aligned_cols=34  Identities=12%  Similarity=0.290  Sum_probs=31.3

Q ss_pred             eEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222           6 GWLIQTSSKSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus         6 ~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      -|-|.|.+..+++.+.+..+++.|.+.|+.++..
T Consensus        72 yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~~  105 (110)
T PF08458_consen   72 YFGLKTAQGVVEFECDSQREYKRWVQGIQHMLSQ  105 (110)
T ss_pred             EEEEEecCcEEEEEeCChhhHHHHHHHHHHHHHH
Confidence            4889999999999999999999999999988775

>PF15409 PH_8: Pleckstrin homology domain

Probab=85.43  E-value=2  Score=31.53  Aligned_cols=33  Identities=15%  Similarity=0.351  Sum_probs=29.1

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKC   36 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~   36 (198)
                      ...|.|.+....+.|-|.++++.+.|+.+|+.+
T Consensus        56 ~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~a   88 (89)
T PF15409_consen   56 SRRIDIDSGDEIWHLKAKSQEDFQRWVSALQKA   88 (89)
T ss_pred             CCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHhc
Confidence            346788888899999999999999999999865

>smart00154 ZnF_AN1 AN1-like Zinc finger

Probab=84.05  E-value=0.67  Score=28.76  Aligned_cols=26  Identities=27%  Similarity=0.966  Sum_probs=19.0

Q ss_pred             cccCCccCCCccccccccccCCceEeCCC
Q psy8222          65 CMHCKRTQFTVLSRRHHCRKCGSVVCAPC   93 (198)
Q Consensus        65 C~~C~~~~Fs~~~RrhhCr~CG~vvC~~C   93 (198)
                      |..|++ .-.++  ...|+.||.+||...
T Consensus         1 C~~C~~-~~~l~--~f~C~~C~~~FC~~H   26 (39)
T smart00154        1 CHFCRK-KVGLT--GFKCRHCGNLFCGEH   26 (39)
T ss_pred             CcccCC-ccccc--CeECCccCCcccccc
Confidence            566877 44333  678999999998765

Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.

>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair

Probab=83.08  E-value=0.21  Score=33.04  Aligned_cols=29  Identities=34%  Similarity=0.870  Sum_probs=18.5

Q ss_pred             ccccCCccCCCcc------ccccccccCCceEeCCC
Q psy8222          64 VCMHCKRTQFTVL------SRRHHCRKCGSVVCAPC   93 (198)
Q Consensus        64 ~C~~C~~~~Fs~~------~RrhhCr~CG~vvC~~C   93 (198)
                      .|..|.+ +|...      ..++.|..|+.+||-.|
T Consensus         1 ~CfgC~~-~~~~~~~~~~~~~~y~C~~C~~~FC~dC   35 (51)
T PF07975_consen    1 YCFGCQK-PFPDGPEKKADSSRYRCPKCKNHFCIDC   35 (51)
T ss_dssp             EETTTTE-E-TTS-------EEE--TTTT--B-HHH
T ss_pred             CCccCCC-CCCCcccccccCCeEECCCCCCccccCc
Confidence            3788998 88875      35799999999999988

It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.

>KOG0320|consensus

Probab=82.54  E-value=0.098  Score=43.19  Aligned_cols=49  Identities=24%  Similarity=0.566  Sum_probs=33.7

Q ss_pred             CCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHhhcc
Q psy8222          62 AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSR  120 (198)
Q Consensus        62 ~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~~  120 (198)
                      .-.|.+|-. .|+  .+--.--+||+|||..|....       .+..++|..|..+|..
T Consensus       131 ~~~CPiCl~-~~s--ek~~vsTkCGHvFC~~Cik~a-------lk~~~~CP~C~kkIt~  179 (187)
T KOG0320|consen  131 TYKCPICLD-SVS--EKVPVSTKCGHVFCSQCIKDA-------LKNTNKCPTCRKKITH  179 (187)
T ss_pred             ccCCCceec-chh--hccccccccchhHHHHHHHHH-------HHhCCCCCCcccccch
Confidence            356778876 443  222245689999999997552       2567889999876654

>KOG2164|consensus

Probab=81.44  E-value=0.42  Score=45.14  Aligned_cols=52  Identities=23%  Similarity=0.529  Sum_probs=39.5

Q ss_pred             CCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHhhcc
Q psy8222          62 AAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSR  120 (198)
Q Consensus        62 ~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~~  120 (198)
                      -..|.+|-. ++.+-.|-    .||+|||..|.-+....+  ..+..+-|.-|+..+..
T Consensus       186 ~~~CPICL~-~~~~p~~t----~CGHiFC~~CiLqy~~~s--~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLE-PPSVPVRT----NCGHIFCGPCILQYWNYS--AIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccC-CCCccccc----ccCceeeHHHHHHHHhhh--cccCCccCCchhhhccc
Confidence            468999998 77765553    399999999976544333  34778899999998765

>TIGR00622 ssl1 transcription factor ssl1

Probab=80.88  E-value=2  Score=32.99  Aligned_cols=40  Identities=28%  Similarity=0.581  Sum_probs=29.7

Q ss_pred             ccccCCCCCccccCCccCCCcc----------ccccccccCCceEeCCCCC
Q psy8222          55 VWIPDNEAAVCMHCKRTQFTVL----------SRRHHCRKCGSVVCAPCSN   95 (198)
Q Consensus        55 ~Wv~d~~~~~C~~C~~~~Fs~~----------~RrhhCr~CG~vvC~~Cs~   95 (198)
                      .|........|..|.+ +|.-.          .-++.|..|..+||-+|=-
T Consensus        48 ~~~~~~~~~~C~~C~~-~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~   97 (112)
T TIGR00622        48 PLEEYNGSRFCFGCQG-PFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDV   97 (112)
T ss_pred             cccccCCCCcccCcCC-CCCCcccccccccccccceeCCCCCCccccccch
Confidence            3443434567999999 99742          3478899999999999953

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG3520|consensus

Probab=80.01  E-value=2.9  Score=43.33  Aligned_cols=36  Identities=22%  Similarity=0.515  Sum_probs=28.7

Q ss_pred             EEEecC---CeEEEEEeCChHHHHHHHHHHHHHHHHHHH
Q psy8222           7 WLIQTS---SKSFAVHAATSTEKQEWMAHINKCIEDLLR   42 (198)
Q Consensus         7 f~i~t~---~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~   42 (198)
                      |+|.+.   --=++|.|.|.+||..||++|+++|....+
T Consensus       688 FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~  726 (1167)
T KOG3520|consen  688 FLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPR  726 (1167)
T ss_pred             EEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCc
Confidence            445543   256889999999999999999999987543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	198
1joc_A	125	Eea1 Homodimer Of C-Terminal Fyve Domain Bound To I		2e-12
1hyi_A	65	Solution Structure Of The Eea1 Fyve Domain Complexe		1e-11
3t7l_A	90	Crystal Structure Of The Fyve Domain Of Endofin (Zf		4e-11
2yqm_A	89	Solution Structure Of The Fyve Domain In Zinc Finge		4e-10
3zyq_A	226	Crystal Structure Of The Tandem Vhs And Fyve Domain		8e-10
2yw8_A	82	Crystal Structure Of Human Run And Fyve Domain-Cont		8e-10
1z2q_A	84	High-Resolution Solution Structure Of The Lm5-1 Fyv		9e-08
1dvp_A	220	Crystal Structure Of The Vhs And Fyve Tandem Domain		2e-07
1vfy_A	73	Phosphatidylinositol-3-Phosphate Binding Fyve Domai		3e-06
3mpx_A	434	Crystal Structure Of The Dh And Ph-1 Domains Of Hum		5e-06

>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol 1,3-Diphosphate Length = 125

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 56  WIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCY 115
           W  DNE   CM C +  F+V  RRHHCR+CG++ CA CS K  L PS S KP+RVC  C+
Sbjct: 63  WAEDNEVQNCMACGKG-FSVTVRRHHCRQCGNIFCAECSAKNALTPS-SKKPVRVCDACF 120
Query: 116 DVLS 119
           + L 
Sbjct: 121 NDLQ 124

>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With Inositol 1,3-Bisphosphate Length = 65

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 56  WIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCY 115
           W  DNE   CM C +  F+V  RRHHCR+CG++ CA CS K  L PS S KP+RVC  C+
Sbjct: 3   WAEDNEVQNCMACGKG-FSVTVRRHHCRQCGNIFCAECSAKNALTPS-SKKPVRVCDACF 60
Query: 116 DVL 118
           + L
Sbjct: 61  NDL 63

>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin (Zfyve16) At 1.1a Resolution Length = 90

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 56  WIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCY 115
           W+PD+EA  CM+C+  +FT   RRHHCR CG V C  C N++  L     K  RVC+ CY
Sbjct: 14  WVPDSEAPNCMNCQ-VKFTFTKRRHHCRACGKVFCGVCCNRKCKL-QYLEKEARVCVVCY 71
Query: 116 DVLSR 120
           + +S+
Sbjct: 72  ETISK 76

>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve Domain-Containing Protein 12 Length = 89

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 55  VWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTC 114
            W+ D+EA  C  C++ +F++  R+HHCR CG + C  CS+    LPS   KP+RVC +C
Sbjct: 19  AWLKDDEATHCRQCEK-EFSISRRKHHCRNCGHIFCNTCSSNELALPSY-PKPVRVCDSC 76
Query: 115 YDVL 118
           + +L
Sbjct: 77  HTLL 80

>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) At 1.48 A Resolution Length = 226

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 41  LRKSGKKPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLL 100
            ++S    AA  A  W+   +A  C  C R QF V++R+HHCR CG + C  CS+K   +
Sbjct: 146 FKESDAMFAAERAPDWV---DAEECHRC-RVQFGVMTRKHHCRACGQIFCGKCSSKYSTI 201
Query: 101 PSQS-AKPLRVCLTCYDVLSR 120
           P     K +RVC  CY+ L+R
Sbjct: 202 PKFGIEKEVRVCEPCYEQLNR 222

>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing Protein Length = 82

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 56  WIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCY 115
           W+ D+EA  C  C++ +F++  R+HHCR CG + C  CS+    LPS   KP+RVC +C+
Sbjct: 13  WLKDDEATHCRQCEK-EFSISRRKHHCRNCGHIFCNTCSSNELALPSY-PKPVRVCDSCH 70
Query: 116 DVL 118
            +L
Sbjct: 71  TLL 73

>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve Domain From Leishmania Major Length = 84

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 54  AVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQS-AKPLRVCL 112
             W  D +A  C  C    FT   RRHHCR CG V+C  CS  R  +P +   +P RVC 
Sbjct: 13  GYWQEDEDAPACNGCG-CVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCD 71
Query: 113 TCYDVLSRDKTVSG 126
            CY  L R   ++G
Sbjct: 72  ACYLAL-RSSNMAG 84

>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of Hrs, A Protein Involved In Membrane Trafficking And Signal Transduction Length = 220

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 41  LRKSGKKPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLL 100
           LR++     A  A  W    +  VC  C R +FT  +R+HHCR CG V C  C+ K+  L
Sbjct: 143 LREADAMFTADTAPNWA---DGRVCHRC-RVEFTFTNRKHHCRNCGQVFCGQCTAKQCPL 198
Query: 101 PSQS-AKPLRVCLTCYDVLSR 120
           P     K +RVC  C+  L R
Sbjct: 199 PKYGIEKEVRVCDGCFAALQR 219

>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of Vps27p Protein From Saccharomyces Cerevisiae Length = 73

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 54  AVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSA-KPLRVCL 112
           A WI   ++  CM C + +F++L+R+HHCR CG V C   S+    LP     +P+RVC 
Sbjct: 6   ADWI---DSDACMICSK-KFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCD 61
Query: 113 TCYD 116
           +C++
Sbjct: 62  SCFE 65

>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5 Length = 434

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 21/129 (16%)
Query: 9   IQTSSKSFAVHAATSTEKQEWMAHINKCI-EDLLRKSGKKPAATHAAVWI---------- 57
           I+TS     + A++  E+ EW   +++ + ED      +  AA H +V I          
Sbjct: 308 IETSESCLXLSASSCAERDEWYGCLSRALPEDY---KAQALAAFHHSVEIRERLGVSLGE 364
Query: 58  ------PDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVC 111
                 P      C +C    F++  RRHHC  CG +VC  CS  ++ L     +  +VC
Sbjct: 365 RPPTLVPVTHVXXCXNCG-CDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRXAKVC 423
Query: 112 LTCYDVLSR 120
             C+  L +
Sbjct: 424 DGCFGELKK 432

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	6e-32
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	5e-31
1z2q_A	84	LM5-1; membrane protein, FYVE domain, zinc-finger;	3e-28
3t7l_A	90	Zinc finger FYVE domain-containing protein 16; str	5e-27
2yw8_A	82	RUN and FYVE domain-containing protein 1; structur	2e-25
1x4u_A	84	Zinc finger, FYVE domain containing 27 isoform B;	7e-25
1wfk_A	88	Zinc finger, FYVE domain containing 19; riken stru	3e-23
1vfy_A	73	Phosphatidylinositol-3-phosphate binding FYVE doma	4e-23
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	7e-22
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	7e-20
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	2e-18
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	2e-17
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	3e-10
1y02_A	120	CARP2, FYVE-ring finger protein sakura; zinc-bindi	6e-10
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	4e-08
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	1e-06
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	2e-06
2lg1_A	185	A-kinase anchor protein 13; metal binding protein;	9e-06
1zbd_B	134	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-05
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	4e-04
2zet_C	153	Melanophilin; complex, GTP-binding protein, GTPase	7e-04

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434

 Score =  118 bits (297), Expect = 6e-32
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 15/133 (11%)

Query: 2   ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKK-------------- 47
           ++     I+TS     + A++  E+ EW   +++ + +  +                   
Sbjct: 301 KVPYALKIETSESCLMLSASSCAERDEWYGCLSRALPEDYKAQALAAFHHSVEIRERLGV 360

Query: 48  PAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKP 107
                    +P     +CM+C    F++  RRHHC  CG +VC  CS  ++ L     + 
Sbjct: 361 SLGERPPTLVPVTHVMMCMNCGCD-FSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRM 419

Query: 108 LRVCLTCYDVLSR 120
            +VC  C+  L +
Sbjct: 420 AKVCDGCFGELKK 432

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A Length = 125

 Score =  108 bits (272), Expect = 5e-31
 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 5/101 (4%)

Query: 21  ATSTEKQEWMAHINKCIEDLLRKSGK---KPAATHAAVWIPDNEAAVCMHCKRTQFTVLS 77
               E Q  + +    +++L R++     K        W  DNE   CM C    F+V  
Sbjct: 25  TKVLELQRKLDNTTAAVQELGRENQSLQIKHTQALNRKWAEDNEVQNCMAC-GKGFSVTV 83

Query: 78  RRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVL 118
           RRHHCR+CG++ CA CS K  L PS S KP+RVC  C++ L
Sbjct: 84  RRHHCRQCGNIFCAECSAKNALTPS-SKKPVRVCDACFNDL 123

>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} Length = 84

 Score =  100 bits (250), Expect = 3e-28
 Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 45  GKKPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQS 104
           G          W  D +A  C  C    FT   RRHHCR CG V+C  CS  R  +P + 
Sbjct: 4   GSMGEKQSKGYWQEDEDAPACNGC-GCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRG 62

Query: 105 -AKPLRVCLTCYDVLSR 120
             +P RVC  CY  L  
Sbjct: 63  ITEPERVCDACYLALRS 79

>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} Length = 90

 Score = 97.6 bits (243), Expect = 5e-27
 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 48  PAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKP 107
                   W+PD+EA  CM+C + +FT   RRHHCR CG V C  C N++  L     K 
Sbjct: 6   VLGQKQPTWVPDSEAPNCMNC-QVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQ-YLEKE 63

Query: 108 LRVCLTCYDVLSRDKTVSGKP 128
            RVC+ CY+ +S+ +      
Sbjct: 64  ARVCVVCYETISKAQAFERMM 84

>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A Length = 82

 Score = 93.3 bits (232), Expect = 2e-25
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 50  ATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLR 109
           A     W+ D+EA  C  C   +F++  R+HHCR CG + C  CS+    LPS   KP+R
Sbjct: 7   ALKGHAWLKDDEATHCRQC-EKEFSISRRKHHCRNCGHIFCNTCSSNELALPS-YPKPVR 64

Query: 110 VCLTCYDVLSR 120
           VC +C+ +L +
Sbjct: 65  VCDSCHTLLLQ 75

>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 84

 Score = 91.9 bits (228), Expect = 7e-25
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 49  AATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPS------ 102
            ++ ++   P N    C  C    F+VL +R  C  CG+  C+ C + +    S      
Sbjct: 1   GSSGSSGRYPTNNFGNCTGC-SATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAP 59

Query: 103 -QSAKPLRVCLTCYDVLSRDKTVSG 126
               + + VC +C   LS+    SG
Sbjct: 60  EAQRETVFVCASCNQTLSKSGPSSG 84

>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 Length = 88

 Score = 87.5 bits (217), Expect = 3e-23
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 56  WIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCY 115
                  + C  C   +FT+  + + C+ CG   C  C +   L+P       +VC  C+
Sbjct: 3   SGSSGMESRCYGC-AVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCH 61

Query: 116 DVLSRDKTVSG 126
            +L+R  + + 
Sbjct: 62  TILTRGSSDNA 72

>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 Length = 73

 Score = 87.0 bits (216), Expect = 4e-23
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 50  ATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQS-AKPL 108
           +   A WI  +    CM C   +F++L+R+HHCR CG V C   S+    LP     +P+
Sbjct: 2   SKTPADWIDSDA---CMICS-KKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPV 57

Query: 109 RVCLTCYDVLSRDKT 123
           RVC +C++      T
Sbjct: 58  RVCDSCFEDYEFIVT 72

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406

 Score = 90.7 bits (225), Expect = 7e-22
 Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 4/97 (4%)

Query: 2   ELRNGWLI--QTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPD 59
           +  + +L+     ++ + +   T   K++WM      I ++  ++       H       
Sbjct: 297 KWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENATAN--GHDFQMFSF 354

Query: 60  NEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNK 96
            E   C  C+        + + C +C +     C  +
Sbjct: 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226

 Score = 82.9 bits (204), Expect = 7e-20
 Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 29  WMAHINKCIEDLLRKSGKKPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSV 88
               I K    +  +  +  A   A       +A  C  C R QF V++R+HHCR CG +
Sbjct: 131 DTYQIMKVEGHVFPEFKESDAMFAAERAPDWVDAEECHRC-RVQFGVMTRKHHCRACGQI 189

Query: 89  VCAPCSNKRFLLPS-QSAKPLRVCLTCYDVLSRDK 122
            C  CS+K   +P     K +RVC  CY+ L+R  
Sbjct: 190 FCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRKA 224

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Length = 220

 Score = 79.0 bits (194), Expect = 2e-18
 Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 1   MELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDN 60
             +R   L    + ++A  ++   +  +    I K       +  +  A   A       
Sbjct: 100 ENVRQKMLELVQTWAYAFRSSDKYQAIKDTMTILKAKGHTFPELREADAMFTADTAPNWA 159

Query: 61  EAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPS-QSAKPLRVCLTCYDVLS 119
           +  VC  C R +FT  +R+HHCR CG V C  C+ K+  LP     K +RVC  C+  L 
Sbjct: 160 DGRVCHRC-RVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQ 218

Query: 120 R 120
           R
Sbjct: 219 R 219

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587

 Score = 78.9 bits (194), Expect = 2e-17
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 11/115 (9%)

Query: 2   ELRNGWLI--QTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPD 59
           +  + +L+     ++ + +   T   K++WM      I ++  ++       H       
Sbjct: 469 KWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENATAN--GHDFQMFSF 526

Query: 60  NEAAVCMHCK---RTQFTVLSRRHHCRKCGSVVCA----PCSNKRFLLPSQSAKP 107
            E   C  C+   R  F    R H CR      C     PC       P    K 
Sbjct: 527 EETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRVPPCGRHGQDFPGTMKKD 581

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B* Length = 113

 Score = 54.5 bits (131), Expect = 3e-10
 Identities = 7/42 (16%), Positives = 18/42 (42%)

Query: 2   ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRK 43
            +++ + +    +S    A  +  K+EW+  + +    L  K
Sbjct: 71  PMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRALSDK 112

>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 Length = 120

 Score = 54.0 bits (129), Expect = 6e-10
 Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 8/72 (11%)

Query: 54  AVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLT 113
           +   P      C  C    F   +R+  C  C    C  CS++            R+CL 
Sbjct: 11  SFPSPTGLEPSCKSC-GAHFANTARKQTCLDCKKNFCMTCSSQV-------GNGPRLCLL 62

Query: 114 CYDVLSRDKTVS 125
           C    +      
Sbjct: 63  CQRFRATAFQRE 74

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 51.2 bits (122), Expect = 4e-08
 Identities = 25/160 (15%), Positives = 46/160 (28%), Gaps = 22/160 (13%)

Query: 4   RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAA--------- 54
              + I    + + +      E+  W+  I    E  +    K+    + A         
Sbjct: 328 EPVFHISHIDRVYTLRTDNINERTAWVQKIKAASEQYIDTEKKQREKAYQARSQKTSGIG 387

Query: 55  -VWIPDNEAAVCMHCKRT-------QFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAK 106
            + +   EA     CK         + ++ S+ +  R     +  P  N       +   
Sbjct: 388 RLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLN-PKWNFNCQFFIKDLY 446

Query: 107 PLRVCLTCYDVLSRDKTVSGKPMAGNTATADKDVSRTSRS 146
              +CLT +D   RD   S     G T      +     S
Sbjct: 447 QDVLCLTLFD---RD-QFSPDDFLGRTEIPVAKIRTEQES 482

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Length = 402

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 10/83 (12%), Positives = 29/83 (34%), Gaps = 7/83 (8%)

Query: 1   MELRNGWLI--QTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIP 58
           + ++N + +  + + +     A    EK  W+    +  + +          +       
Sbjct: 324 VSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQEDEKIGFEISENQ---- 379

Query: 59  DNEAAVCMHCKRTQFTVLSRRHH 81
             +AA+ +    ++  V  R+ H
Sbjct: 380 KRQAAMTVRKA-SKQKVTQRKWH 401

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 132

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 2   ELRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIE 38
                + I  S+ +   VH   + + QEWM  +N+  +
Sbjct: 89  GSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTK 126

>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens} Length = 185

 Score = 43.5 bits (102), Expect = 9e-06
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 3/50 (6%)

Query: 2   ELRNGWLIQTSSKS---FAVHAATSTEKQEWMAHINKCIEDLLRKSGKKP 48
           E +  +LI           VHA++  E+  W+  I   I  L R   +  
Sbjct: 133 EEKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTINTLNRDEDEGI 182

>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Length = 134

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 3/75 (4%)

Query: 42  RKSGKKPAATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLP 101
           R              +  +    C+ C      + S    C  C   VC  C        
Sbjct: 35  RIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC---GVETS 91

Query: 102 SQSAKPLRVCLTCYD 116
           +    P+ +C  C +
Sbjct: 92  NNRPHPVWLCKICLE 106

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 6/49 (12%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 1   MELRNGWLIQTSS--KSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKK 47
           + ++N + +   +   S  +      +KQ W+    +  E +       
Sbjct: 401 VSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLDQETG 449

>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Length = 153

 Score = 37.7 bits (86), Expect = 7e-04
 Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 56  WIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCY 115
                    C  C +    +L+ R  C +C   VC  CS+      +   +   +C  C+
Sbjct: 62  DTAHLNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH------AHPEEQGWLCDPCH 115

Query: 116 D 116
            
Sbjct: 116 L 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	99.93
1z2q_A	84	LM5-1; membrane protein, FYVE domain, zinc-finger;	99.87
1x4u_A	84	Zinc finger, FYVE domain containing 27 isoform B;	99.87
2yw8_A	82	RUN and FYVE domain-containing protein 1; structur	99.85
3t7l_A	90	Zinc finger FYVE domain-containing protein 16; str	99.84
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	99.83
1vfy_A	73	Phosphatidylinositol-3-phosphate binding FYVE doma	99.83
1wfk_A	88	Zinc finger, FYVE domain containing 19; riken stru	99.79
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	99.78
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	99.78
1y02_A	120	CARP2, FYVE-ring finger protein sakura; zinc-bindi	99.71
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	99.49
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	99.16
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	98.39
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	97.91
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	97.84
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	97.83
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	97.77
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	97.75
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	97.7
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	97.64
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	97.63
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	97.59
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	97.59
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	97.57
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	97.56
3cxb_B	112	Pleckstrin homology domain-containing family M mem	97.52
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	97.51
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	97.5
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	97.49
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	97.45
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	97.42
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	97.42
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	97.42
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	97.41
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	97.39
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	97.38
2d9v_A	130	Pleckstrin homology domain-containing protein fami	97.36
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	97.35
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	97.34
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	97.33
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	97.29
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	97.25
2dkp_A	128	Pleckstrin homology domain-containing family A mem	97.25
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	97.22
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	97.19
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	97.19
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	97.17
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	97.17
1wi1_A	126	Calcium-dependent activator protein for secretion,	97.13
2d9y_A	117	Pleckstrin homology domain-containing protein fami	97.12
3qwm_A	140	Iqsec1, IQ motif and SEC7 domain-containing protei	97.11
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	97.11
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	97.1
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	97.1
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	97.05
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	96.86
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	96.84
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	96.69
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	96.66
1zbd_B	134	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.57
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	96.51
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	96.5
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	96.43
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	96.38
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	96.29
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	96.21
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	96.13
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	95.99
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	95.94
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	95.8
2zet_C	153	Melanophilin; complex, GTP-binding protein, GTPase	95.48
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	94.91
1wff_A	85	Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc	94.74
1wfh_A	64	Zinc finger (AN1-like) family protein; ZF-AN1 doma	94.52
1wfl_A	74	Zinc finger protein 216; ZF-AN1 domain, zinc bindi	93.88
1wg2_A	64	Zinc finger (AN1-like) family protein; riken struc	93.43
1wfp_A	74	Zinc finger (AN1-like) family protein; ZF-AN1 doma	92.96
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	92.89
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	92.75
2a20_A	62	Regulating synaptic membrane exocytosis protein 2;	91.71
1x4w_A	67	Hypothetical protein FLJ13222; ZF-AN1 domain, zinc	90.1
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	88.96
2csz_A	76	Synaptotagmin-like protein 4; exophilin 2, granuph	88.2
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	85.02
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	84.81
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	82.53
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	81.59
2jrp_A	81	Putative cytoplasmic protein; two-zinc binding pro	80.4

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=99.93  E-value=6.6e-27  Score=210.30  Aligned_cols=118  Identities=24%  Similarity=0.604  Sum_probs=33.7

Q ss_pred             CCcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHHHHHhcC--------------CCCCCCCCCccccCCCCCcccc
Q psy8222           2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSG--------------KKPAATHAAVWIPDNEAAVCMH   67 (198)
Q Consensus         2 ~~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~~~g--------------~~~~~~~~~~Wv~d~~~~~C~~   67 (198)
                      .++|+|.|.++.++|.|+|.|++||+.|+++|+++|........              ..+....+|.|+||..+..|+.
T Consensus       301 ~~~~~f~i~~~~~~~~l~a~s~~ek~~W~~~i~~ai~e~~~~~~~~~f~~~~e~~~~~~~~~~~~~p~w~~~~~~~~c~~  380 (434)
T 3mpx_A          301 KVPYALKIETSESCLMLSASSCAERDEWYGCLSRALPEDYKAQALAAFHHSVEIRERLGVSLGERPPTLVPVTHVMMCMN  380 (434)
T ss_dssp             TSCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHC---------------------------------------------
T ss_pred             CCCeeEEEecCCeEEEEecCCHHHHHHHHHHHHHHHHHHHhhhcccccCCccchhhcccCccccCCCcCCCcccCCcCCC
Confidence            46899999999999999999999999999999999986432211              1123446789999999999999


Q ss_pred             CCccCCCccccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHhhcc
Q psy8222          68 CKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSR  120 (198)
Q Consensus        68 C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~~  120 (198)
                      |+. +|+++.||||||.||.|||..||.+++++|..+.+++|||+.||..+..
T Consensus       381 c~~-~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~~  432 (434)
T 3mpx_A          381 CGC-DFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELKK  432 (434)
T ss_dssp             -----------------------------------------------------
T ss_pred             cCC-CCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHHh
Confidence            999 9999999999999999999999999999987777999999999998864

>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}

Probab=99.87  E-value=3.7e-23  Score=149.29  Aligned_cols=72  Identities=39%  Similarity=0.851  Sum_probs=66.6

Q ss_pred             CCCCCccccCCCCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCC-CCCeeeccchHHhhcccc
Q psy8222          50 ATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQS-AKPLRVCLTCYDVLSRDK  122 (198)
Q Consensus        50 ~~~~~~Wv~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~-~~~~RVC~~C~~~l~~~~  122 (198)
                      .+..+.|+||.++..|+.|++ +|++++||||||.||+|||+.||.++++||..+ .+++|||+.||..|....
T Consensus         9 ~~~~~~W~pd~~~~~C~~C~~-~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~~~   81 (84)
T 1z2q_A            9 KQSKGYWQEDEDAPACNGCGC-VFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRSSN   81 (84)
T ss_dssp             TCCCSCCCCTTTCCBCTTTCC-BCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHTSC
T ss_pred             cCCCCccccCCCCCCCcCcCC-ccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhhcc
Confidence            455789999999999999999 999999999999999999999999999999987 599999999999987653

>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=9.7e-23  Score=147.06  Aligned_cols=68  Identities=29%  Similarity=0.680  Sum_probs=63.0

Q ss_pred             CCccccCCCCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCC-------CCeeeccchHHhhccc
Q psy8222          53 AAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSA-------KPLRVCLTCYDVLSRD  121 (198)
Q Consensus        53 ~~~Wv~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~-------~~~RVC~~C~~~l~~~  121 (198)
                      .+.|+||.++..|+.|.+ +|++++||||||+||+|||+.|+.++++||..+.       +++|||+.||..|...
T Consensus         5 ~~~W~pd~~~~~C~~C~~-~F~~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~~~   79 (84)
T 1x4u_A            5 SSGRYPTNNFGNCTGCSA-TFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSKS   79 (84)
T ss_dssp             CCCSCSCCCCSSCSSSCC-CCCSSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHHSC
T ss_pred             CCccccCCCCCcCcCcCC-ccccchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHhcc
Confidence            578999999999999999 9999999999999999999999999999987653       6899999999998764

>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A

Probab=99.85  E-value=4.4e-22  Score=143.06  Aligned_cols=67  Identities=40%  Similarity=1.028  Sum_probs=58.0

Q ss_pred             CCccccCCCCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHhhccc
Q psy8222          53 AAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRD  121 (198)
Q Consensus        53 ~~~Wv~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~~~  121 (198)
                      .+.|+||.++..|+.|++ +|++++||||||.||.|||+.|+.++++||.. .+++|||+.||..|...
T Consensus        10 ~~~W~~d~~~~~C~~C~~-~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~-~~~~RVC~~C~~~l~~~   76 (82)
T 2yw8_A           10 GHAWLKDDEATHCRQCEK-EFSISRRKHHCRNCGHIFCNTCSSNELALPSY-PKPVRVCDSCHTLLLQR   76 (82)
T ss_dssp             -----CCCCCCBCTTTCC-BCBTTBCCEECTTTCCEECSGGGCEEECCTTC-SSCEEECHHHHHHTTC-
T ss_pred             CCccccCccCCcccCcCC-cccCccccccCCCCCCEEChHHhCCeeecCCC-CCcCEECHHHHHHHHHh
Confidence            478999999999999999 99999999999999999999999999999873 68999999999988754

>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}

Probab=99.84  E-value=3.7e-22  Score=145.90  Aligned_cols=73  Identities=41%  Similarity=0.983  Sum_probs=65.7

Q ss_pred             CCCCCccccCCCCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHhhcccccC
Q psy8222          50 ATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRDKTV  124 (198)
Q Consensus        50 ~~~~~~Wv~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~~~~~~  124 (198)
                      ...+|.|++|.++..|+.|.+ +|++++||||||+||.|||..|+.+++++|.. .+++|||+.||..|......
T Consensus         8 ~~~~p~W~~d~~~~~C~~C~~-~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~-~~~~RVC~~C~~~l~~~~~~   80 (90)
T 3t7l_A            8 GQKQPTWVPDSEAPNCMNCQV-KFTFTKRRHHCRACGKVFCGVCCNRKCKLQYL-EKEARVCVVCYETISKAQAF   80 (90)
T ss_dssp             TTSCCCCCCGGGCCBCTTTCC-BCCSSSCCEECTTTCCEECGGGSCEEEEETTT-TEEEEECHHHHHHHHHHC--
T ss_pred             CCCCCcCcccccCCcCcCCCC-cccchhhCccccCCCCEECCcccCCeeecCCC-CCCCeECHHHHHHHHHHhhh
Confidence            456789999999999999999 99999999999999999999999999999874 48999999999999876543

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A

Probab=99.83  E-value=5e-22  Score=153.30  Aligned_cols=65  Identities=51%  Similarity=1.072  Sum_probs=61.2

Q ss_pred             CCccccCCCCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHhhc
Q psy8222          53 AAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLS  119 (198)
Q Consensus        53 ~~~Wv~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~  119 (198)
                      ++.|+||.++..|+.|++ +|++++||||||.||.|||+.||.+++++|. ..+|+|||+.||..|+
T Consensus        60 ~~~W~~d~~~~~C~~C~~-~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~-~~~p~RVC~~C~~~l~  124 (125)
T 1joc_A           60 NRKWAEDNEVQNCMACGK-GFSVTVRRHHCRQCGNIFCAECSAKNALTPS-SKKPVRVCDACFNDLQ  124 (125)
T ss_dssp             HCCCCCGGGCCBCTTTCC-BCCSSSCCEECTTTCCEECGGGSCEEECCTT-CSSCEEECHHHHHHTT
T ss_pred             CCccccCCCCCCCcCcCC-ccccccccccCCCCCeEEChHHhCCccccCC-CCCCCEeCHHHHHHhc
Confidence            578999999999999999 9999999999999999999999999998886 4699999999999875

>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1

Probab=99.83  E-value=6.5e-22  Score=139.23  Aligned_cols=67  Identities=37%  Similarity=0.890  Sum_probs=58.2

Q ss_pred             CCCCccccCCCCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCC-CCeeeccchHHhhccc
Q psy8222          51 THAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSA-KPLRVCLTCYDVLSRD  121 (198)
Q Consensus        51 ~~~~~Wv~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~-~~~RVC~~C~~~l~~~  121 (198)
                      +.++.|+++   ..|+.|++ +|++++||||||.||+|||+.|+.++++||..+. +++|||+.||..+...
T Consensus         3 ~~~p~W~~~---~~C~~C~~-~F~~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~i   70 (73)
T 1vfy_A            3 KTPADWIDS---DACMICSK-KFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYEFI   70 (73)
T ss_dssp             ----CCCCC---SBCTTTCC-BCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTEEEEEEECHHHHHHHHHH
T ss_pred             CCCCcCccC---CcccCCCC-ccCCccccccCCCCCEEEcccccCCeEEcccCCCCCCCEECHHHHHHHHHH
Confidence            347899986   48999999 9999999999999999999999999999998875 8999999999988653

>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1

Probab=99.79  E-value=5e-20  Score=134.11  Aligned_cols=62  Identities=26%  Similarity=0.687  Sum_probs=58.0

Q ss_pred             CCCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHhhcccc
Q psy8222          60 NEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRDK  122 (198)
Q Consensus        60 ~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~~~~  122 (198)
                      .++..|+.|.+ +|++++||||||.||+|||+.|+.++++||..+.+++|||+.||..|....
T Consensus         7 ~~~~~C~~C~~-~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~~   68 (88)
T 1wfk_A            7 GMESRCYGCAV-KFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGS   68 (88)
T ss_dssp             CCCSBCTTTCC-BCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHCC
T ss_pred             CcCCCCcCcCC-cccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhcc
Confidence            46789999999 999999999999999999999999999999988899999999999998754

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=99.78  E-value=1.3e-19  Score=151.16  Aligned_cols=94  Identities=35%  Similarity=0.770  Sum_probs=73.7

Q ss_pred             ChHHHHHHHHHHH---------HHHHHHHHhcCCC-CC---------CCCCCccccCCCCCccccCCccCCCcccccccc
Q psy8222          22 TSTEKQEWMAHIN---------KCIEDLLRKSGKK-PA---------ATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHC   82 (198)
Q Consensus        22 s~~Ek~~Wi~~i~---------~~i~~ll~~~g~~-~~---------~~~~~~Wv~d~~~~~C~~C~~~~Fs~~~RrhhC   82 (198)
                      ..+..++|...+.         ++...| ...|.. |.         .+.++.|+++   ..|+.|++ +|++++|||||
T Consensus       106 il~li~~W~~~f~~~~~~~~i~~~y~~L-k~~G~~FP~~~e~~a~f~~~~~~~W~~~---~~C~~C~~-~F~~~~rrhhC  180 (220)
T 1dvp_A          106 MLELVQTWAYAFRSSDKYQAIKDTMTIL-KAKGHTFPELREADAMFTADTAPNWADG---RVCHRCRV-EFTFTNRKHHC  180 (220)
T ss_dssp             HHHHHHHHHHHTTTCSSCCHHHHHHHHH-HHTTCCCCCCCC---CCCCSCCCCCCCC---SBCTTTCC-BCCSSSCCEEC
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHH-hhcCccccccccccccccccccccCCCC---CccCCCCC-ccCCccccccc
Confidence            3456778887764         444444 344422 11         2347899975   69999999 99999999999


Q ss_pred             ccCCceEeCCCCCCeeecCCCCC-CCeeeccchHHhhcc
Q psy8222          83 RKCGSVVCAPCSNKRFLLPSQSA-KPLRVCLTCYDVLSR  120 (198)
Q Consensus        83 r~CG~vvC~~Cs~~~~~lp~~~~-~~~RVC~~C~~~l~~  120 (198)
                      |.||.|||+.||.++.++|..+. +++|||+.||..|+.
T Consensus       181 r~CG~v~C~~Cs~~~~~~~~~~~~~~~RvC~~C~~~l~~  219 (220)
T 1dvp_A          181 RNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQR  219 (220)
T ss_dssp             TTTCCEECSTTSCEEEEEGGGTEEEEEEECHHHHHHHHH
T ss_pred             CCcCCEEChHHhCCeeecCcCCCCCCCEeCHHHHHHHhc
Confidence            99999999999999999998764 999999999998864

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=99.78  E-value=1.6e-19  Score=151.56  Aligned_cols=69  Identities=41%  Similarity=0.944  Sum_probs=61.0

Q ss_pred             CCCCCccccCCCCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCC-CCeeeccchHHhhcccc
Q psy8222          50 ATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSA-KPLRVCLTCYDVLSRDK  122 (198)
Q Consensus        50 ~~~~~~Wv~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~-~~~RVC~~C~~~l~~~~  122 (198)
                      .+.+|.|+++   ..|+.|++ +|++++||||||+||.|||+.||.++.++|..+. +++|||+.||..|....
T Consensus       155 ~~~~p~W~~~---~~C~~C~~-~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~~~  224 (226)
T 3zyq_A          155 AERAPDWVDA---EECHRCRV-QFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRKA  224 (226)
T ss_dssp             CCCCCCCCCC---SBCTTTCC-BCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC--
T ss_pred             cccccccccC---CCCcCcCC-CCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhhhhc
Confidence            4458999975   58999999 9999999999999999999999999999998764 89999999999987653

>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1

Probab=99.71  E-value=1.3e-18  Score=133.26  Aligned_cols=65  Identities=22%  Similarity=0.467  Sum_probs=44.5

Q ss_pred             CCCCCCccccCCCCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHhhccc
Q psy8222          49 AATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRD  121 (198)
Q Consensus        49 ~~~~~~~Wv~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~~~  121 (198)
                      ...+.+.|.||..+..|+.|+. +|++++||||||+||.|||+.||.++++       ++|||+.||..+...
T Consensus         6 ~~~~~~~~~Pd~~~~~C~~C~~-~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-------~vRVC~~C~~~~~~~   70 (120)
T 1y02_A            6 NPGYSSFPSPTGLEPSCKSCGA-HFANTARKQTCLDCKKNFCMTCSSQVGN-------GPRLCLLCQRFRATA   70 (120)
T ss_dssp             --------------CCCTTTCC-CCSSGGGCEECTTTCCEECGGGEEC-----------CCEEHHHHHHHHTT
T ss_pred             CCCcccCCcCccccCcccCcCC-ccccccccccCCCCCCeeCHHHhCCCCC-------CceECHHHHHHHhcc
Confidence            3556788999999999999999 9999999999999999999999998764       499999999987643

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=99.49  E-value=2.4e-14  Score=127.83  Aligned_cols=92  Identities=15%  Similarity=0.385  Sum_probs=79.1

Q ss_pred             CCcceEEEec--CCeEEEEEeCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCCCCccccCCccCC-Ccccc
Q psy8222           2 ELRNGWLIQT--SSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNEAAVCMHCKRTQF-TVLSR   78 (198)
Q Consensus         2 ~~~n~f~i~t--~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~~~g~~~~~~~~~~Wv~d~~~~~C~~C~~~~F-s~~~R   78 (198)
                      .++|+|.|..  +.++|.|+|.|++||+.|+++|+++|..+.....  ....|...|.++...+.|+.|+. .| +++++
T Consensus       297 ~~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~~~~--~~~~h~f~~~~~~~~t~C~~C~~-~~~g~~~q  373 (406)
T 2vrw_B          297 KWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENA--TANGHDFQMFSFEETTSCKACQM-LLRGTFYQ  373 (406)
T ss_dssp             TTCEEEEEEETTCSCEEEEEESSHHHHHHHHHHHHHHHHHHSCTTT--TGGGCCEEEECCSSCCBCTTTCC-BCCSSSSC
T ss_pred             ccceeeEEEecCCCceEEEeCCCHHHHHHHHHHHHHHHhhhhhccc--cCCCCCCccccCCCCCCCccccc-hhceeCCC
Confidence            3679999985  5789999999999999999999999998643222  23457889999999999999999 88 58899


Q ss_pred             ccccccCCceEeCCCCCC
Q psy8222          79 RHHCRKCGSVVCAPCSNK   96 (198)
Q Consensus        79 rhhCr~CG~vvC~~Cs~~   96 (198)
                      +|||+.||.+||..|+..
T Consensus       374 g~~C~~C~~~~h~~C~~~  391 (406)
T 2vrw_B          374 GYRCYRCRAPAHKECLGR  391 (406)
T ss_dssp             EEEETTTCCEECGGGGGG
T ss_pred             CCCCCCCcCccchhhhhh
Confidence            999999999999999864

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=99.16  E-value=2.4e-11  Score=113.53  Aligned_cols=92  Identities=15%  Similarity=0.390  Sum_probs=77.0

Q ss_pred             CCcceEEEecCC--eEEEEEeCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccccCCCCCccccCCccCC-Ccccc
Q psy8222           2 ELRNGWLIQTSS--KSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIPDNEAAVCMHCKRTQF-TVLSR   78 (198)
Q Consensus         2 ~~~n~f~i~t~~--KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~~~g~~~~~~~~~~Wv~d~~~~~C~~C~~~~F-s~~~R   78 (198)
                      .++|+|.|.+..  ++|.|+|.|.+||+.|+++|+.+|+.+..+.  .....|.-.|.+....+.|+.|+. .| +++++
T Consensus       469 ~~~~~f~i~~~~~~~~~~L~A~S~eeK~~Wi~~I~~ai~~~~~~~--~~~~~H~F~~~~~~~~t~C~~C~~-~l~gl~~q  545 (587)
T 3ky9_A          469 KWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPEN--ATANGHDFQMFSFEETTSCKACQM-LLRGTFYQ  545 (587)
T ss_dssp             TTCEEEEEEETTC---CEEEESSHHHHHHHHHHHHHHHHHHSCTT--TTGGGCCEEEECCSSCCBCTTTCS-BCCSSSCC
T ss_pred             cccceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHhhhhcccc--ccccCCceeEEeCCCCcccccccc-cccccccC
Confidence            378999999876  8999999999999999999999998764322  223456778888899999999998 76 88899


Q ss_pred             ccccccCCceEeCCCCCC
Q psy8222          79 RHHCRKCGSVVCAPCSNK   96 (198)
Q Consensus        79 rhhCr~CG~vvC~~Cs~~   96 (198)
                      .|+|+.||.+||..|...
T Consensus       546 g~~C~~C~~~vHk~C~~~  563 (587)
T 3ky9_A          546 GYRCHRCRASAHKECLGR  563 (587)
T ss_dssp             EEEETTTCCEECSGGGGG
T ss_pred             CcCCCCCCCccchhhhhc
Confidence            999999999999999865

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*

Probab=98.39  E-value=6.3e-07  Score=67.23  Aligned_cols=42  Identities=17%  Similarity=0.287  Sum_probs=39.2

Q ss_pred             CCcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHHHHHh
Q psy8222           2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRK   43 (198)
Q Consensus         2 ~~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~~   43 (198)
                      .++|+|.|.+.++||.++|.+++||.+|+.+|++|++.++.+
T Consensus        71 ~~~n~f~i~~~~~s~~~~aes~~eK~~Wl~~~~~a~~~~~~~  112 (113)
T 1zc3_B           71 PMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRALSDK  112 (113)
T ss_dssp             TBSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHHHHhhc
Confidence            589999999999999999999999999999999999987654

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.91  E-value=1.6e-05  Score=58.17  Aligned_cols=40  Identities=10%  Similarity=0.364  Sum_probs=37.3

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHHHHHh
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRK   43 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~~   43 (198)
                      +|.|.|.++.++|.|.|.|++|+++||.+|+.+|..+++.
T Consensus        67 ~~~F~I~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~  106 (114)
T 2da0_A           67 KKSFDLISHNRTYHFQAEDEQDYVAWISVLTNSKEEALTM  106 (114)
T ss_dssp             SSCEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEcCCcEEEEEcCCHHHHHHHHHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999999988754

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=97.84  E-value=1.7e-05  Score=62.42  Aligned_cols=37  Identities=8%  Similarity=0.339  Sum_probs=34.3

Q ss_pred             CcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus         3 ~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      .++.|.|.++.++|+|.|.|++|+++||++|+++|..
T Consensus        86 ~~~~f~i~t~~rt~~l~A~s~~e~~~Wi~aL~~~i~~  122 (164)
T 2lul_A           86 NKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEIKN  122 (164)
T ss_dssp             SCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred             cceeEEEecCCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999998874

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=97.83  E-value=2.8e-05  Score=55.23  Aligned_cols=37  Identities=16%  Similarity=0.511  Sum_probs=34.7

Q ss_pred             cceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIEDL   40 (198)
Q Consensus         4 ~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~~l   40 (198)
                      +|.|.|.++. ++|.|.|.|.+|+++|+.+|+.+|..+
T Consensus        70 ~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~i~~l  107 (108)
T 1u5d_A           70 ESCFELTSQDRRTYEFTATSPAEARDWVDQISFLLKDL  107 (108)
T ss_dssp             GGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            5899999998 999999999999999999999999865

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=97.77  E-value=4e-05  Score=60.70  Aligned_cols=49  Identities=14%  Similarity=0.350  Sum_probs=39.6

Q ss_pred             ceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCccc
Q psy8222           5 NGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWI   57 (198)
Q Consensus         5 n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~~~g~~~~~~~~~~Wv   57 (198)
                      |.|+|.++.++|+|.|.|++|+++||++|+.+|..    ........|+..|.
T Consensus        99 ~~F~I~t~~rt~yl~A~s~~E~~eWi~aI~~~i~~----n~~~~~~~h~~~~~  147 (169)
T 1btk_A           99 YPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVIRY----NSDLVQKYHPCFWI  147 (169)
T ss_dssp             EEEEEEETTCCEEEEESCHHHHHHHHHHHHHHHTT----CSCCCSEECSSCEE
T ss_pred             ccEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHHH----CcchhhccCCCcee
Confidence            89999999999999999999999999999988763    12223345666676

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.75  E-value=7.9e-05  Score=53.72  Aligned_cols=39  Identities=28%  Similarity=0.475  Sum_probs=35.8

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLR   42 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~   42 (198)
                      +|.|.|.++.+.|.|.|.+.+|+++||.+|+.++..+..
T Consensus        69 ~~~F~i~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~~  107 (115)
T 2dn6_A           69 KCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTIHLLKL  107 (115)
T ss_dssp             CSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEeCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhc
Confidence            579999999999999999999999999999999987543

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.70  E-value=7.3e-05  Score=54.99  Aligned_cols=43  Identities=16%  Similarity=0.478  Sum_probs=37.9

Q ss_pred             CcceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHHHHHHhcC
Q psy8222           3 LRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIEDLLRKSG   45 (198)
Q Consensus         3 ~~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~~~g   45 (198)
                      -++.|.|.++. +.|.|.|.+.+|+++||.+|+.++........
T Consensus        68 ~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~~~  111 (120)
T 2d9x_A           68 DSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEAIG  111 (120)
T ss_dssp             SSSCEEECCSSSCCEEECCSSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCCEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHHhhhhhc
Confidence            35899999997 99999999999999999999999988765544

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=97.64  E-value=5e-05  Score=55.99  Aligned_cols=38  Identities=18%  Similarity=0.318  Sum_probs=35.4

Q ss_pred             CcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDL   40 (198)
Q Consensus         3 ~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~l   40 (198)
                      .+|.|.|.++.+.|.|.|.+.+|+++|+.+|+.+|..+
T Consensus        77 ~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~  114 (126)
T 1fao_A           77 RVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQI  114 (126)
T ss_dssp             SSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999864

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=97.63  E-value=0.0001  Score=55.58  Aligned_cols=38  Identities=29%  Similarity=0.464  Sum_probs=34.6

Q ss_pred             cceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIEDLL   41 (198)
Q Consensus         4 ~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll   41 (198)
                      +|.|.|.++. +.|.++|.+.+|+++||.+|+.+|..+.
T Consensus        89 ~~~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~~i~~~~  127 (129)
T 2p0d_A           89 RNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIERLV  127 (129)
T ss_dssp             SSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHhcc
Confidence            5899999886 6899999999999999999999998763

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=97.59  E-value=4e-05  Score=53.82  Aligned_cols=34  Identities=15%  Similarity=0.320  Sum_probs=31.9

Q ss_pred             CcceEEEecCCeEEEEEeCChHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKC   36 (198)
Q Consensus         3 ~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~   36 (198)
                      -++.|.|.++.++|.|.|.|++|+++||++|+.|
T Consensus        59 ~~~~F~i~~~~r~~~l~A~s~~e~~~Wi~aLq~A   92 (94)
T 2rsg_A           59 DECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQH   92 (94)
T ss_dssp             CSSEEEEEETTEEEEEECCSSCCTHHHHHHHHHH
T ss_pred             cceeEEEEeCCeEEEEECCCHHHHHHHHHHHHhh
Confidence            4689999999999999999999999999999876

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.59  E-value=0.00014  Score=53.55  Aligned_cols=40  Identities=18%  Similarity=0.243  Sum_probs=36.8

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHHHHHh
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRK   43 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~~   43 (198)
                      ++.|.|.++.+.|.|.|.+.+|+++||.+|+.++......
T Consensus        70 ~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~  109 (119)
T 2dhk_A           70 EGIFEIKTPSRVITLKAATKQAMLYWLQQLQMKRWEFHNS  109 (119)
T ss_dssp             GCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHHhcCC
Confidence            5799999999999999999999999999999999887654

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=97.57  E-value=0.00012  Score=53.54  Aligned_cols=37  Identities=27%  Similarity=0.441  Sum_probs=34.8

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDL   40 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~l   40 (198)
                      +|.|.|.++.+.|.|.|.+.+|+++||.+|+.+|...
T Consensus        77 ~~~F~i~~~~r~~~l~a~s~~e~~~W~~al~~~i~~~  113 (125)
T 1eaz_A           77 DNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQ  113 (125)
T ss_dssp             SSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEeCCcEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence            6899999999999999999999999999999999753

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.56  E-value=0.00012  Score=53.99  Aligned_cols=37  Identities=16%  Similarity=0.371  Sum_probs=34.0

Q ss_pred             CcceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus         3 ~~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      -+|.|.|.++. +.|.+.|.+++|+++||.+|+.++..
T Consensus        81 r~~~F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~~~  118 (123)
T 1wjm_A           81 RKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIAS  118 (123)
T ss_dssp             CSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            37899999887 99999999999999999999999875

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=97.52  E-value=5.7e-05  Score=55.50  Aligned_cols=38  Identities=16%  Similarity=0.395  Sum_probs=33.2

Q ss_pred             cceEEEec-CCeEEEEEeCChHHHHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQT-SSKSFAVHAATSTEKQEWMAHINKCIEDLL   41 (198)
Q Consensus         4 ~n~f~i~t-~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll   41 (198)
                      +|.|.|.+ ..++|.+.|.+++|.++||.+|+.++....
T Consensus        66 ~~~F~l~~~~~~~y~f~A~s~ee~~~Wi~ai~~~~~~~~  104 (112)
T 3cxb_B           66 PHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVSKGV  104 (112)
T ss_dssp             TTEEEEEETTSCCEEEECSSHHHHHHHHHHHHHHHTCC-
T ss_pred             CeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHhhccc
Confidence            69999995 478999999999999999999999887543

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.51  E-value=0.00017  Score=52.09  Aligned_cols=38  Identities=26%  Similarity=0.350  Sum_probs=34.4

Q ss_pred             CcceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIEDL   40 (198)
Q Consensus         3 ~~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~~l   40 (198)
                      -+|.|.|.++. +.|.|.|.|.+|+++||.+|+.++...
T Consensus        65 ~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~  103 (113)
T 1pls_A           65 RMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCI  103 (113)
T ss_dssp             SSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CccEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHhcc
Confidence            36799999886 999999999999999999999998864

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.50  E-value=0.00014  Score=52.78  Aligned_cols=36  Identities=14%  Similarity=0.484  Sum_probs=33.9

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      +|.|.|.++.+.|.|.|.+.+|+++||.+|+.++..
T Consensus        65 ~~~F~i~~~~r~~~l~a~s~~e~~~Wi~~l~~~~~~  100 (115)
T 2cod_A           65 DNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKS  100 (115)
T ss_dssp             TTEEEEEESSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999999865

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=97.49  E-value=0.00011  Score=56.63  Aligned_cols=38  Identities=24%  Similarity=0.407  Sum_probs=35.1

Q ss_pred             CCcceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222           2 ELRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus         2 ~~~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      .++|+|.|.++. +++.|+|.|.+|++.||++|+.+|..
T Consensus        89 ~~~~aFeI~g~~~~~i~v~~~s~eE~~~Wl~~L~~~i~~  127 (132)
T 1v61_A           89 GSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKS  127 (132)
T ss_dssp             SSCCCEEEECSSSCEEEECCCCSHHHHHHHHHHHHHHTT
T ss_pred             cCccEEEEecCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            378999999998 99999999999999999999998764

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.45  E-value=0.00025  Score=53.93  Aligned_cols=38  Identities=21%  Similarity=0.395  Sum_probs=34.5

Q ss_pred             CcceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIEDL   40 (198)
Q Consensus         3 ~~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~~l   40 (198)
                      -+|.|.|.++. +.|.|.|.+.+|+++||.+|+.+|...
T Consensus        88 ~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~ai~~~  126 (150)
T 1wg7_A           88 RRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLN  126 (150)
T ss_dssp             CTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence            46899999996 999999999999999999999998753

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.42  E-value=0.00017  Score=56.28  Aligned_cols=35  Identities=11%  Similarity=0.257  Sum_probs=32.8

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      .|.|.|.++.++|.+.|.|.+|+++||.+|+.++.
T Consensus        79 ~~~F~I~t~~r~~~f~A~s~ee~~eWi~aI~~v~~  113 (149)
T 1x1f_A           79 CAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTE  113 (149)
T ss_dssp             CCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999999988776

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=97.42  E-value=8.5e-05  Score=53.72  Aligned_cols=35  Identities=17%  Similarity=0.490  Sum_probs=32.3

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      ++.|.|.++.+.|.|.|.+.+|+++||.+|+.+|.
T Consensus        77 ~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~i~  111 (117)
T 1v5u_A           77 KAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLS  111 (117)
T ss_dssp             TTCEEEEESSCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred             CeEEEEECCCceEEEECCCHHHHHHHHHHHHHHhc
Confidence            47999999999999999999999999999987764

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.42  E-value=0.00014  Score=52.39  Aligned_cols=36  Identities=14%  Similarity=0.135  Sum_probs=32.2

Q ss_pred             CcceEEEecC-CeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTS-SKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         3 ~~n~f~i~t~-~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      -+|.|.|.++ .++|.|.|.|.+|+++||.+|+.++.
T Consensus        65 ~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~~~  101 (107)
T 2cof_A           65 HLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSESG  101 (107)
T ss_dssp             BSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHSS
T ss_pred             CCeEEEEEeCCCeEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            4689999998 89999999999999999999987643

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=97.41  E-value=0.00025  Score=52.14  Aligned_cols=40  Identities=25%  Similarity=0.493  Sum_probs=35.5

Q ss_pred             cceEEEe----cCCeEEEEEeCChHHHHHHHHHHHHHHHHHHHh
Q psy8222           4 RNGWLIQ----TSSKSFAVHAATSTEKQEWMAHINKCIEDLLRK   43 (198)
Q Consensus         4 ~n~f~i~----t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~~   43 (198)
                      +|.|.|.    ++.++|.|.|.|.+|+++||.+|+.++..+...
T Consensus        72 ~~~F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~~  115 (125)
T 1unq_A           72 PNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKKQ  115 (125)
T ss_dssp             TTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhhcccc
Confidence            6899999    567999999999999999999999999876543

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=97.39  E-value=0.00022  Score=51.38  Aligned_cols=35  Identities=11%  Similarity=0.165  Sum_probs=31.5

Q ss_pred             cceEEEecC-CeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTS-SKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         4 ~n~f~i~t~-~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      +|.|.|.++ .+.|.|.|.|++|+++||.+|+.++.
T Consensus        76 ~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~  111 (112)
T 3aj4_A           76 DCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRT  111 (112)
T ss_dssp             GGEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CcEEEEEecCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence            579999865 89999999999999999999998763

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.38  E-value=0.00021  Score=51.43  Aligned_cols=35  Identities=17%  Similarity=0.393  Sum_probs=32.6

Q ss_pred             cceEEEec--------CCeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQT--------SSKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         4 ~n~f~i~t--------~~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      +|.|.|.+        +.++|.|.|.+.+|+++||.+|+.++.
T Consensus        70 ~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~  112 (118)
T 1v89_A           70 KFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAG  112 (118)
T ss_dssp             CCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHc
Confidence            67999997        789999999999999999999999886

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.36  E-value=0.00024  Score=53.24  Aligned_cols=35  Identities=9%  Similarity=0.147  Sum_probs=31.6

Q ss_pred             cceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         4 ~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      +|.|.|.++. +.|.|+|.+++|+++||++|+.++.
T Consensus        79 ~~~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~~  114 (130)
T 2d9v_A           79 DGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANS  114 (130)
T ss_dssp             TTEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CcEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            5789999854 9999999999999999999998875

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=97.35  E-value=0.00029  Score=50.21  Aligned_cols=35  Identities=29%  Similarity=0.412  Sum_probs=31.8

Q ss_pred             CcceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCI   37 (198)
Q Consensus         3 ~~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i   37 (198)
                      -+|.|.|.++. +.|.|.|.|.+|+++||.+|+.++
T Consensus        73 ~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~~~  108 (109)
T 2i5f_A           73 EENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS  108 (109)
T ss_dssp             CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence            46899999987 669999999999999999999886

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=97.34  E-value=0.00021  Score=50.72  Aligned_cols=33  Identities=15%  Similarity=0.409  Sum_probs=30.2

Q ss_pred             cceEEEecCC-eEEEEEeCChHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKC   36 (198)
Q Consensus         4 ~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~   36 (198)
                      +|.|.|.++. +.|.|.|.|.+|+++||.+|+.|
T Consensus        73 ~~~F~i~~~~~~~~~~~A~s~~e~~~Wi~ai~~A  106 (106)
T 1btn_A           73 KHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             SSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             ccEEEEEecCCCEEEEECCCHHHHHHHHHHHhcC
Confidence            7899999776 99999999999999999999864

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=97.33  E-value=0.00015  Score=51.53  Aligned_cols=36  Identities=14%  Similarity=0.348  Sum_probs=32.7

Q ss_pred             cceEEEecC-CeEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTS-SKSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus         4 ~n~f~i~t~-~KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      ++.|.|.++ .+.|.|.|.|.+|+++||.+|+.++..
T Consensus        58 ~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~   94 (103)
T 3rcp_A           58 NTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSKAS   94 (103)
T ss_dssp             SSEEEEEETTTEEEEEECSSHHHHHHHHHHHHTTSCC
T ss_pred             CceEEEEeCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            678999987 799999999999999999999987654

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=97.29  E-value=0.00023  Score=53.77  Aligned_cols=35  Identities=14%  Similarity=0.402  Sum_probs=32.2

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      ++.|.|.++.++|.|.|.|++|+++||++|+.++.
T Consensus        86 ~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~a~~  120 (126)
T 1v5p_A           86 PFCFVINALSQRYFLQANDQKDLKDWVEALNQASK  120 (126)
T ss_dssp             SSEEEEECSSCEEEEECSSHHHHHHHHHHHHHTTT
T ss_pred             CEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999998754

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=97.25  E-value=0.00047  Score=50.30  Aligned_cols=27  Identities=30%  Similarity=0.586  Sum_probs=24.8

Q ss_pred             CeEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222          13 SKSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus        13 ~KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      .+.|.|.|.|++|+++||.+|+.+|..
T Consensus        95 ~r~~~l~a~s~~e~~~Wi~al~~~i~~  121 (127)
T 1fgy_A           95 HVVYRISAPSPEEKEEWMKSIKASISR  121 (127)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCHHHHHHHHHHHHHHhcc
Confidence            378999999999999999999999875

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=97.25  E-value=0.00036  Score=51.23  Aligned_cols=36  Identities=11%  Similarity=0.239  Sum_probs=32.2

Q ss_pred             CcceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         3 ~~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      -+|.|.|.++. +.|.|.|.+++|+++||.+|+.++.
T Consensus        83 ~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~  119 (128)
T 2dkp_A           83 RKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAAL  119 (128)
T ss_dssp             SCSEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred             CCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            35789999986 9999999999999999999988754

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=97.22  E-value=0.00032  Score=54.48  Aligned_cols=36  Identities=17%  Similarity=0.280  Sum_probs=33.1

Q ss_pred             CcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         3 ~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      -+|.|.|.++.+.|.|.|.+++|+++||.+|+.++.
T Consensus        76 ~~~~F~I~t~~r~~~l~A~s~~e~~~Wi~ai~~~~~  111 (168)
T 2j59_M           76 RKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQESSN  111 (168)
T ss_dssp             CSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             CCCEEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHh
Confidence            368999999999999999999999999999998763

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=97.19  E-value=0.00046  Score=50.90  Aligned_cols=36  Identities=14%  Similarity=0.332  Sum_probs=32.5

Q ss_pred             cceEEEec-CCeEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQT-SSKSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus         4 ~n~f~i~t-~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      +|.|.|.+ +.+.|.++|.+++|.++||.+|+.+|..
T Consensus        84 ~~~F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~~~i~~  120 (122)
T 1dro_A           84 KHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDS  120 (122)
T ss_dssp             TTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred             CeEEEEEEcCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            68999996 5699999999999999999999998763

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=97.19  E-value=0.00028  Score=53.65  Aligned_cols=38  Identities=18%  Similarity=0.393  Sum_probs=33.2

Q ss_pred             cceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIEDLL   41 (198)
Q Consensus         4 ~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll   41 (198)
                      +|.|.|.++. ++|.|.|.+.+|+++||.+|+.+|..+.
T Consensus        84 ~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~  122 (148)
T 1u5f_A           84 DCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQDLG  122 (148)
T ss_dssp             GGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHCC---
T ss_pred             ccEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHHhc
Confidence            5899999987 9999999999999999999999987653

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.17  E-value=0.00023  Score=52.41  Aligned_cols=36  Identities=22%  Similarity=0.437  Sum_probs=32.5

Q ss_pred             CcceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         3 ~~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      -+|.|.|.++. +.|.|.|.+.+|+++||.+|+.++.
T Consensus        88 ~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~  124 (129)
T 1x1g_A           88 QGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTS  124 (129)
T ss_dssp             CSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHHSS
T ss_pred             CCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            36899999997 6799999999999999999998875

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=97.17  E-value=0.00049  Score=50.12  Aligned_cols=37  Identities=11%  Similarity=0.329  Sum_probs=33.1

Q ss_pred             CcceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus         3 ~~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      .++.|.|.++. ++|.|.|.|.+|+++||.+|+.++..
T Consensus        73 ~~~~f~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~  110 (123)
T 1upq_A           73 RRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRA  110 (123)
T ss_dssp             SSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHHC-
T ss_pred             CcEEEEEECCCCeEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            46889999887 99999999999999999999998864

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.13  E-value=0.00063  Score=51.99  Aligned_cols=35  Identities=6%  Similarity=0.175  Sum_probs=32.4

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      ++.|.|.++.++|.|.|.|++|+++||++|..|+-
T Consensus        76 k~~F~~v~~~~ty~~~Adseee~~~WikAi~~A~~  110 (126)
T 1wi1_A           76 RAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATG  110 (126)
T ss_dssp             SSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEecCCceEEEEcCCHHHHHHHHHHHHHHhc
Confidence            57899999999999999999999999999998874

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.12  E-value=0.00046  Score=49.75  Aligned_cols=36  Identities=8%  Similarity=0.371  Sum_probs=31.4

Q ss_pred             CcceEEEec-CCeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQT-SSKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         3 ~~n~f~i~t-~~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      .+|.|.|.+ ..+.|.|.|.+++|+++||.+|+.++.
T Consensus        73 ~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~  109 (117)
T 2d9y_A           73 RKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAAR  109 (117)
T ss_dssp             CSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred             CccEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            367999975 469999999999999999999998764

>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}

Probab=97.11  E-value=0.00095  Score=51.90  Aligned_cols=40  Identities=13%  Similarity=0.273  Sum_probs=35.6

Q ss_pred             CCcceEEEecCC------eEEEEEeCChHHHHHHHHHHHHHHHHHH
Q psy8222           2 ELRNGWLIQTSS------KSFAVHAATSTEKQEWMAHINKCIEDLL   41 (198)
Q Consensus         2 ~~~n~f~i~t~~------KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll   41 (198)
                      .|+|+|.|.++.      .++.|.|.|.+||+.|++.|+.+|.+..
T Consensus        80 ~~p~~~~l~s~~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~e~~  125 (140)
T 3qwm_A           80 YYPNGIRLTSSVPGADIKVLINFNAPNPQDRKKFTDDLRESIAEVQ  125 (140)
T ss_dssp             SCTTEEEEEECCTTSCCEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEecCCCCcceEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence            489999999753      7899999999999999999999998653

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=97.11  E-value=0.00066  Score=48.66  Aligned_cols=35  Identities=9%  Similarity=0.215  Sum_probs=31.1

Q ss_pred             cceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         4 ~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      +|.|.|.++. +.|.|.|.+++|++.||.+|+.++.
T Consensus        68 ~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a~~  103 (109)
T 1wgq_A           68 SKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTV  103 (109)
T ss_dssp             SSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHHS
T ss_pred             CcEEEEEeCCCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence            5899999775 6799999999999999999998753

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.10  E-value=0.00075  Score=50.08  Aligned_cols=35  Identities=17%  Similarity=0.464  Sum_probs=32.6

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      +|.|+|..++++|.+.|.|+++.+.||.+|+.|+.
T Consensus        72 ~~~Fki~~~~~~y~f~A~s~e~~~~Wl~al~~A~~  106 (112)
T 2coc_A           72 GHVWKLQWAKQSWYLSASSAELQQQWLETLSTAAH  106 (112)
T ss_dssp             SEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEecCCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999998754

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=97.10  E-value=0.00048  Score=50.76  Aligned_cols=37  Identities=27%  Similarity=0.393  Sum_probs=33.2

Q ss_pred             CcceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus         3 ~~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      -+|.|.|.++. +.|.|.|.+.+|+++||.+|+.++..
T Consensus        84 ~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~  121 (129)
T 1x05_A           84 EENLFEIITADEVHYFLQAATPKERTEWIKAIQMASRT  121 (129)
T ss_dssp             SCSEEEEECTTCCCCEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             CCeEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHc
Confidence            46899999985 67999999999999999999998864

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=97.05  E-value=0.00066  Score=50.58  Aligned_cols=37  Identities=11%  Similarity=0.217  Sum_probs=31.4

Q ss_pred             cceEEEecCC---eEEEEEeCChHHHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSS---KSFAVHAATSTEKQEWMAHINKCIEDL   40 (198)
Q Consensus         4 ~n~f~i~t~~---KSf~v~A~s~~Ek~~Wi~~i~~~i~~l   40 (198)
                      +|.|.|.+++   +.|.|.|.|.+|+++||.+|+.++...
T Consensus        82 ~~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~~~  121 (124)
T 2w2x_D           82 SFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWKI  121 (124)
T ss_dssp             SEEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC--
T ss_pred             CEEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHHhh
Confidence            5799998764   689999999999999999999987653

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=96.86  E-value=0.0013  Score=54.14  Aligned_cols=36  Identities=17%  Similarity=0.419  Sum_probs=34.1

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      +|.|.|.++.+.|.|.|.|.+|+++||.+|+.++..
T Consensus       121 ~~~F~I~t~~r~~~l~A~s~~e~~~Wv~aL~~~i~~  156 (228)
T 3tfm_A          121 ENGIDIIMADRTFHLIAESPEDASQWFSVLSQVHSS  156 (228)
T ss_dssp             TSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             CcEEEEEcCCcEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            689999999999999999999999999999999973

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=96.84  E-value=0.0013  Score=49.17  Aligned_cols=37  Identities=27%  Similarity=0.433  Sum_probs=31.9

Q ss_pred             CCcceEEEec------CCeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           2 ELRNGWLIQT------SSKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         2 ~~~n~f~i~t------~~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      .+++.|+|..      +.++|+|.|.|.+|++.|+.+|..+|.
T Consensus        73 ~~p~iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i~  115 (117)
T 2rov_A           73 EIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKKIP  115 (117)
T ss_dssp             TGGGEEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred             cCCcEEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence            3678899985      359999999999999999999988764

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=96.69  E-value=0.0028  Score=53.56  Aligned_cols=38  Identities=13%  Similarity=0.407  Sum_probs=34.9

Q ss_pred             cceEEEec-CCeEEEEEeCChHHHHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQT-SSKSFAVHAATSTEKQEWMAHINKCIEDLL   41 (198)
Q Consensus         4 ~n~f~i~t-~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll   41 (198)
                      +|.|.|.+ ..+.|.+.|.|++|+++||.+|+.++..+.
T Consensus        89 ~~~F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~~~  127 (263)
T 3a8p_A           89 EHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASLF  127 (263)
T ss_dssp             SSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence            68999999 679999999999999999999999998754

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=96.66  E-value=0.0015  Score=55.28  Aligned_cols=38  Identities=16%  Similarity=0.264  Sum_probs=33.3

Q ss_pred             CcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDL   40 (198)
Q Consensus         3 ~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~l   40 (198)
                      .+|.|.|.++.++|.|.|.|++|+++||.+|+.++...
T Consensus        77 ~~~~F~I~t~~rty~l~A~se~e~~~Wi~aL~~~~~~~  114 (264)
T 1qqg_A           77 NKHLVALYTRDEHFAIAADSEAEQDSWYQALLQLHNRA  114 (264)
T ss_dssp             CSSEEEEEESSCEEEEECSSHHHHHHHHHHHHHHC---
T ss_pred             CCcEEEEEECCEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence            46899999999999999999999999999999988764

>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1

Probab=96.57  E-value=0.008  Score=46.20  Aligned_cols=54  Identities=24%  Similarity=0.645  Sum_probs=43.8

Q ss_pred             CCCccccCCccCCCcc-ccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHhh
Q psy8222          61 EAAVCMHCKRTQFTVL-SRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVL  118 (198)
Q Consensus        61 ~~~~C~~C~~~~Fs~~-~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l  118 (198)
                      ....|.+|.+ +|+++ ++.+.|..|..-||..|....   +....+..=+|..|...-
T Consensus        54 ~~~~C~~C~~-~~g~l~~~g~~C~~C~~~VC~~C~~~~---~~~~~~~~W~C~vC~k~r  108 (134)
T 1zbd_B           54 GVNRCILCGE-QLGMLGSASVVCEDCKKNVCTKCGVET---SNNRPHPVWLCKICLEQR  108 (134)
T ss_dssp             SSSBCSSSCC-BCSTTSCCEEECTTTCCEEETTSEEEC---CCSSSSCCEEEHHHHHHH
T ss_pred             CCccccccCC-CcccccCCCCCCCCCCcccccccCCcc---CCCCCccceechhhHHHH
Confidence            5688999999 99855 789999999999999997542   222347889999999753

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=96.51  E-value=0.0025  Score=48.19  Aligned_cols=24  Identities=13%  Similarity=0.457  Sum_probs=22.0

Q ss_pred             EEEEEeCChHHHHHHHHHHHHHHH
Q psy8222          15 SFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus        15 Sf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      .|.|.|.|++|+++||++|+.++.
T Consensus       101 ~~~f~A~s~~e~~~Wi~ai~~a~~  124 (130)
T 1v88_A          101 YLIIRATSESDGRCWMDALELALK  124 (130)
T ss_dssp             CCEEECSSHHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHh
Confidence            388999999999999999998875

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1

Probab=96.50  E-value=0.0036  Score=55.44  Aligned_cols=40  Identities=13%  Similarity=0.266  Sum_probs=35.6

Q ss_pred             CcceEEEecC--CeEEEEEeCChHHHHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTS--SKSFAVHAATSTEKQEWMAHINKCIEDLLR   42 (198)
Q Consensus         3 ~~n~f~i~t~--~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~   42 (198)
                      ++|+|.|.+.  .++|.|+|.|++||+.|+++|+.++..+..
T Consensus       326 ~~~~F~i~~~~~~~~~~l~a~s~~eK~~Wi~~i~~a~~~~~~  367 (402)
T 2dfk_A          326 MKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQE  367 (402)
T ss_dssp             ESSEEEEEESSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceeEEEEECCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Confidence            5799999865  579999999999999999999999988654

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=96.43  E-value=0.0046  Score=55.56  Aligned_cols=41  Identities=15%  Similarity=0.348  Sum_probs=36.3

Q ss_pred             CCcceEEEecC--CeEEEEEeCChHHHHHHHHHHHHHHHHHHH
Q psy8222           2 ELRNGWLIQTS--SKSFAVHAATSTEKQEWMAHINKCIEDLLR   42 (198)
Q Consensus         2 ~~~n~f~i~t~--~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~   42 (198)
                      .++|+|.|...  .++|.|+|.|++||+.|+++|+.++..+..
T Consensus       402 ~~~~~F~i~~~~~~~~~~l~a~s~~eK~~W~~~i~~a~~~~~~  444 (466)
T 2pz1_A          402 SIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQL  444 (466)
T ss_dssp             CBCEEEEEECSSSCCEEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccceeEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Confidence            36799999976  579999999999999999999999998654

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=96.38  E-value=0.0049  Score=46.88  Aligned_cols=37  Identities=5%  Similarity=0.255  Sum_probs=33.3

Q ss_pred             CcceEEEecC--CeEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTS--SKSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus         3 ~~n~f~i~t~--~KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      -+|.|+|.++  ...|.+.|.+.++.+.|+.+|..++..
T Consensus        75 ~~~~F~L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~~  113 (126)
T 2dtc_A           75 HPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKS  113 (126)
T ss_dssp             STTEEEEECTTSCSEEEEECSSHHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEeeCCCCCEEEEeCCCHHHHHHHHHHHHHHHhc
Confidence            3699999976  689999999999999999999998873

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A

Probab=96.29  E-value=0.0064  Score=52.84  Aligned_cols=40  Identities=20%  Similarity=0.331  Sum_probs=34.6

Q ss_pred             CcceEEEec--CCeEEEEEeCChHHHHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQT--SSKSFAVHAATSTEKQEWMAHINKCIEDLLR   42 (198)
Q Consensus         3 ~~n~f~i~t--~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~   42 (198)
                      -+|+|.|..  +.++|.|+|.|+++|+.|+++|+.+|.....
T Consensus       288 ~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~  329 (353)
T 1kz7_A          288 DTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQ  329 (353)
T ss_dssp             BTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence            368899974  5789999999999999999999999987544

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=96.21  E-value=0.0062  Score=45.52  Aligned_cols=35  Identities=6%  Similarity=0.269  Sum_probs=30.0

Q ss_pred             CcceEEEecCC-------eEEEEEeCChHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS-------KSFAVHAATSTEKQEWMAHINKCI   37 (198)
Q Consensus         3 ~~n~f~i~t~~-------KSf~v~A~s~~Ek~~Wi~~i~~~i   37 (198)
                      -.+.|.|.+++       +.|.+.|.|.+|+++||++|+.++
T Consensus        76 ~~~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~  117 (120)
T 4a6h_A           76 SDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT  117 (120)
T ss_dssp             -CCEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             CCcEEEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence            35689998776       499999999999999999999875

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.13  E-value=0.0071  Score=46.19  Aligned_cols=34  Identities=15%  Similarity=0.411  Sum_probs=29.7

Q ss_pred             CCcceEEEecCCeEEEEEeCChHHHHHHHHHHHHH
Q psy8222           2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKC   36 (198)
Q Consensus         2 ~~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~   36 (198)
                      ...++|.|.|++|+|.|.|.+. |+.+||.+|.+.
T Consensus        86 k~~~aF~l~T~er~~~laAe~~-E~~~Wi~~ic~~  119 (127)
T 2d9w_A           86 RDTSAFFLETKERLYLLAAPAA-ERGDWVQAICLL  119 (127)
T ss_dssp             SSCEEEEEEESSCEEEEEECHH-HHHHHHHHHHHH
T ss_pred             CcceEEEEEeCCcEEEEEeCcH-HHHHHHHHHHHH
Confidence            3458999999999999999964 999999999754

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=95.99  E-value=0.01  Score=51.57  Aligned_cols=38  Identities=16%  Similarity=0.386  Sum_probs=33.1

Q ss_pred             CcceEEEec-----CCeEEEEEeCChHHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQT-----SSKSFAVHAATSTEKQEWMAHINKCIEDL   40 (198)
Q Consensus         3 ~~n~f~i~t-----~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~l   40 (198)
                      .+|.|.|..     ..++|.|+|.|.++|+.|+++|.++|...
T Consensus       278 ~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~  320 (354)
T 2rgn_B          278 DPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILESQ  320 (354)
T ss_dssp             CTTEEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence            368899975     35899999999999999999999999864

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=95.94  E-value=0.0012  Score=59.44  Aligned_cols=41  Identities=12%  Similarity=0.315  Sum_probs=0.0

Q ss_pred             CCcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHHHHH
Q psy8222           2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLR   42 (198)
Q Consensus         2 ~~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~   42 (198)
                      ..+|.|.|.++.++|.|.|.|.+||++|+++|++++...+.
T Consensus       326 ~~~~~F~i~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~  366 (510)
T 3jzy_A          326 SDEPVFHISHIDRVYTLRTDNINERTAWVQKIKAASEQYID  366 (510)
T ss_dssp             -----------------------------------------
T ss_pred             ccccceeeeccceeEEeccCCHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999999999987654

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=95.80  E-value=0.0083  Score=45.70  Aligned_cols=33  Identities=12%  Similarity=0.329  Sum_probs=28.6

Q ss_pred             cceEEEecCC--------eEEEEEeCChHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSS--------KSFAVHAATSTEKQEWMAHINKC   36 (198)
Q Consensus         4 ~n~f~i~t~~--------KSf~v~A~s~~Ek~~Wi~~i~~~   36 (198)
                      +|.|.|.++.        ++|.|.|.|.+|+++|++.|.+|
T Consensus        75 k~~F~l~~~d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra  115 (125)
T 1dyn_A           75 KHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRA  115 (125)
T ss_dssp             CEEEEEEETTSSCSSTTCSSEEEEESSHHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCccccccceEEEEeCCCHHHHHHHHHHHHhC
Confidence            5889999765        49999999999999999999553

>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}

Probab=95.48  E-value=0.0046  Score=48.61  Aligned_cols=51  Identities=25%  Similarity=0.671  Sum_probs=42.5

Q ss_pred             CCCccccCCccCCCcc-ccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHhh
Q psy8222          61 EAAVCMHCKRTQFTVL-SRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVL  118 (198)
Q Consensus        61 ~~~~C~~C~~~~Fs~~-~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l  118 (198)
                      ....|.+|.+ +|+++ ++.+-|..|..-||..|...   ++   ....=+|..|+..-
T Consensus        67 ~~~~C~~C~~-~fg~l~~~g~~C~~C~~~VC~~C~~~---~~---~~~~W~C~vC~k~r  118 (153)
T 2zet_C           67 NETHCARCLQ-PYRLLLNSRRQCLECSLFVCKSCSHA---HP---EEQGWLCDPCHLAR  118 (153)
T ss_dssp             GGTBCTTTCC-BGGGCSSCCEECTTTCCEECGGGEEC---CS---SSSSCEEHHHHHHH
T ss_pred             CCccchhhcC-ccccccCCCCcCCCCCchhhcccccc---cC---CCCcEeeHHHHHHH
Confidence            3678999999 99987 79999999999999999832   22   36789999999763

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=94.91  E-value=0.033  Score=49.44  Aligned_cols=40  Identities=13%  Similarity=0.277  Sum_probs=34.6

Q ss_pred             CcceEEEe----cCCeEEEEEeCChHHHHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQ----TSSKSFAVHAATSTEKQEWMAHINKCIEDLLR   42 (198)
Q Consensus         3 ~~n~f~i~----t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~   42 (198)
                      -+|.|.|.    ++.+.|.|+|.+.+|+.+|+++|+.+....++
T Consensus       207 ~~~~f~I~~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~~~~lq  250 (386)
T 3lju_X          207 HPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAARFHYLQ  250 (386)
T ss_dssp             STTCEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEecCCCceEEEEEcCCHHHHHHHHHhhhhccccccc
Confidence            36789988    88999999999999999999999988665444

>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=94.74  E-value=0.043  Score=39.05  Aligned_cols=32  Identities=25%  Similarity=0.673  Sum_probs=26.0

Q ss_pred             CCCCCccccCCccCCCccccccccccCCceEeCCC
Q psy8222          59 DNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPC   93 (198)
Q Consensus        59 d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~C   93 (198)
                      ......|..|++ ...|+ -..+|| ||.+||..+
T Consensus        22 k~~~~rC~~C~k-kvgl~-~~f~Cr-Cg~~FC~~H   53 (85)
T 1wff_A           22 KKIMKHCFLCGK-KTGLA-TSFECR-CGNNFCASH   53 (85)
T ss_dssp             CCCCCBCSSSCC-BCSSS-SCEECT-TCCEECTTT
T ss_pred             cccCccchhhCC-eeccc-CCeEcC-CCCEecccC
Confidence            345689999999 88876 358998 999998865

>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=94.52  E-value=0.026  Score=38.09  Aligned_cols=30  Identities=23%  Similarity=0.783  Sum_probs=24.7

Q ss_pred             CCCCccccCCccCCCccccccccccCCceEeCCC
Q psy8222          60 NEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPC   93 (198)
Q Consensus        60 ~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~C   93 (198)
                      .....|..|++ ...|+  ...|| ||.+||..+
T Consensus        13 ~~~~rC~~C~k-kvgl~--~f~Cr-Cg~~FC~~H   42 (64)
T 1wfh_A           13 QRPNRCTVCRK-RVGLT--GFMCR-CGTTFCGSH   42 (64)
T ss_dssp             SSCCCCTTTCC-CCCTT--CEECS-SSCEECTTT
T ss_pred             CcCCcChhhCC-ccCcc--CEEee-cCCEecccc
Confidence            34578999999 88877  68995 999999865

>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=93.88  E-value=0.059  Score=37.33  Aligned_cols=29  Identities=24%  Similarity=0.839  Sum_probs=24.3

Q ss_pred             CCCccccCCccCCCccccccccccCCceEeCCC
Q psy8222          61 EAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPC   93 (198)
Q Consensus        61 ~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~C   93 (198)
                      ....|..|++ ...++  ...|| ||.+||..+
T Consensus        24 ~~nRC~~CrK-kvgL~--gf~Cr-Cg~~FCs~H   52 (74)
T 1wfl_A           24 KKNRCFMCRK-KVGLT--GFDCR-CGNLFCGLH   52 (74)
T ss_dssp             CTTBCSSSCC-BCGGG--CEECT-TSCEECSSS
T ss_pred             cCCcChhhCC-ccccc--CeecC-CCCEechhc
Confidence            4578999999 87776  48999 999998865

>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=93.43  E-value=0.06  Score=36.32  Aligned_cols=29  Identities=31%  Similarity=0.887  Sum_probs=24.2

Q ss_pred             CCCccccCCccCCCccccccccccCCceEeCCC
Q psy8222          61 EAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPC   93 (198)
Q Consensus        61 ~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~C   93 (198)
                      ....|..|++ ...|+  ...| .||.+||..+
T Consensus        14 ~~~rC~~C~k-kvgl~--~f~C-rCg~~FC~~H   42 (64)
T 1wg2_A           14 PNNRCFSCNK-KVGVM--GFKC-KCGSTFCGSH   42 (64)
T ss_dssp             CSCSCTTTCC-CCTTS--CEEC-TTSCEECSSS
T ss_pred             cCCcChhhCC-ccccc--CeEe-ecCCEecccC
Confidence            4578999999 87776  6899 6999999865

>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=92.96  E-value=0.086  Score=36.51  Aligned_cols=31  Identities=29%  Similarity=0.848  Sum_probs=25.5

Q ss_pred             CCCCCccccCCccCCCccccccccccCCceEeCCC
Q psy8222          59 DNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPC   93 (198)
Q Consensus        59 d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~C   93 (198)
                      ......|..|++ ...++  ...| .||.+||..+
T Consensus        22 k~~~~RC~~C~k-kvgL~--~f~C-rCg~~FCs~H   52 (74)
T 1wfp_A           22 KSTATRCLSCNK-KVGVT--GFKC-RCGSTFCGTH   52 (74)
T ss_dssp             TCCCCBCSSSCC-BCTTT--CEEC-TTSCEECTTT
T ss_pred             cccCccchhhcC-ccccc--ceEe-ccCCEecccc
Confidence            346789999999 88877  6899 5999998865

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=92.89  E-value=0.1  Score=51.84  Aligned_cols=38  Identities=24%  Similarity=0.344  Sum_probs=33.0

Q ss_pred             CCcceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222           2 ELRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus         2 ~~~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      .++|+|.|.+.. .+|.|+|.|.+||+.|+++|+.+..+
T Consensus       509 ~~~~~F~I~~~~~~~~~L~A~S~eeK~~Wi~~I~~~q~k  547 (1049)
T 3ksy_A          509 EYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYR  547 (1049)
T ss_dssp             SCCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cccceEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            367999999876 59999999999999999999876653

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=92.75  E-value=0.064  Score=45.90  Aligned_cols=36  Identities=17%  Similarity=0.377  Sum_probs=31.6

Q ss_pred             cceEEEecC-CeEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTS-SKSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus         4 ~n~f~i~t~-~KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      +|.|.|.++ .+.|.+.|.+.+|.+.|+.+|+.++..
T Consensus        89 k~vF~L~t~~g~~yLFQA~s~eEm~~WI~aI~~a~~~  125 (279)
T 3a8n_A           89 DFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAA  125 (279)
T ss_dssp             CSCCCEEETTTEEEECCCSCHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence            689999865 578999999999999999999988864

>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C

Probab=91.71  E-value=0.15  Score=33.79  Aligned_cols=54  Identities=31%  Similarity=0.692  Sum_probs=41.4

Q ss_pred             CCCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHh
Q psy8222          60 NEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDV  117 (198)
Q Consensus        60 ~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~  117 (198)
                      ++...|.+|.+|+|.= .--|.|..|-.-||+.|..+ ..|.  +.+-.=||..|.+.
T Consensus         7 ~d~~~C~iC~KTKFAD-G~Gh~C~yCk~r~CaRCGg~-v~lr--~~k~~WvC~lC~k~   60 (62)
T 2a20_A            7 GDAPTCGICHKTKFAD-GCGHNCSYCQTKFCARCGGR-VSLR--SNKVMWVCNLCRKQ   60 (62)
T ss_dssp             SCCCCCSSSSCSCCCS-SCCEEBTTTCCEECTTSEEE-EESS--TTCEEEEEHHHHHH
T ss_pred             CCcchhhhhccceecc-CCCccccccCCeeecccCCE-eeec--CCeEEEEehhhhhc
Confidence            4677899999988842 23489999999999999765 3443  45788899999753

>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.10  E-value=0.12  Score=35.08  Aligned_cols=32  Identities=22%  Similarity=0.738  Sum_probs=25.2

Q ss_pred             CCCCccccCCccCCCcccc-ccccccCCceEeCCC
Q psy8222          60 NEAAVCMHCKRTQFTVLSR-RHHCRKCGSVVCAPC   93 (198)
Q Consensus        60 ~~~~~C~~C~~~~Fs~~~R-rhhCr~CG~vvC~~C   93 (198)
                      .....|..|++ ...|... -..| .||.+||..+
T Consensus        13 ~~~~rC~~C~k-k~gL~~~egf~C-rCg~~FC~~H   45 (67)
T 1x4w_A           13 KSRRRCFQCQT-KLELVQQELGSC-RCGYVFCMLH   45 (67)
T ss_dssp             SCTTBCSSSCC-BCCHHHHHHHCC-SSSCCCCTTT
T ss_pred             ccCCcchhhCC-eecccccCceEe-cCCCEehhcc
Confidence            35678999999 8776643 4789 7999998865

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.96  E-value=0.59  Score=35.93  Aligned_cols=33  Identities=12%  Similarity=0.168  Sum_probs=26.7

Q ss_pred             cceEEEecCC----eEEEEEeCChHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSS----KSFAVHAATSTEKQEWMAHINKC   36 (198)
Q Consensus         4 ~n~f~i~t~~----KSf~v~A~s~~Ek~~Wi~~i~~~   36 (198)
                      +.+|.|..|.    +.+.|.|.|+++.++||++++.|
T Consensus        74 kf~ikl~iPs~~g~r~y~l~cdsEeqy~~WMaA~rlA  110 (137)
T 2ys3_A           74 KFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLA  110 (137)
T ss_dssp             BEEEEEEEECSSSEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             ceEEEEEccCCCCceEEEEECCCHHHHHHHHHHHHHh
Confidence            4455566654    88999999999999999998754

>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.20  E-value=0.25  Score=34.38  Aligned_cols=50  Identities=22%  Similarity=0.602  Sum_probs=40.1

Q ss_pred             CCCccccCCccCCCcc-ccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHhh
Q psy8222          61 EAAVCMHCKRTQFTVL-SRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVL  118 (198)
Q Consensus        61 ~~~~C~~C~~~~Fs~~-~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l  118 (198)
                      ....|..|+. +|++| +|--.|+.|-+-||.+|--.   ..    .+.=.|..|++..
T Consensus        24 ~~r~CarC~~-~LG~l~~~g~~C~~Ck~rVC~~Crv~---~~----~~~W~C~VC~k~~   74 (76)
T 2csz_A           24 SDRTCARCQE-SLGRLSPKTNTCRGCNHLVCRDCRIQ---ES----NGTWRCKVCSGPS   74 (76)
T ss_dssp             CCCBCSSSCC-BCSSSCTTTSEETTTTEECCTTSEEE---CS----TTCEEEHHHHSSC
T ss_pred             CccchhhhCc-cccccccCCCcCcccChhhccccccc---CC----CCCEEEeeCchhh
Confidence            4678999999 99976 58999999999999999533   11    2678899988653

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=85.02  E-value=0.57  Score=28.85  Aligned_cols=37  Identities=16%  Similarity=0.399  Sum_probs=26.8

Q ss_pred             CCCccccCCccCCCccccccccccCCceEeCCCCCCee
Q psy8222          61 EAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRF   98 (198)
Q Consensus        61 ~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~   98 (198)
                      ....|.+|.. .|.--........||++||..|...++
T Consensus         4 ~~~~C~IC~~-~~~~~~~~~~~~~CgH~fc~~Ci~~~~   40 (55)
T 2ecm_A            4 GSSGCPICLE-DIHTSRVVAHVLPCGHLLHRTCYEEML   40 (55)
T ss_dssp             CCCSCTTTCC-CCCTTTSCEEECTTSCEEETTHHHHHH
T ss_pred             CCCcCcccCh-hhcCCCcCeEecCCCCcccHHHHHHHH
Confidence            4567999998 775433344556799999999987654

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=84.81  E-value=0.21  Score=33.28  Aligned_cols=54  Identities=22%  Similarity=0.336  Sum_probs=35.1

Q ss_pred             CCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHhhc
Q psy8222          61 EAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLS  119 (198)
Q Consensus        61 ~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~  119 (198)
                      +...|.+|.. .|.--.   . -.||++||..|.................|..|-..+.
T Consensus        11 ~~~~C~IC~~-~~~~p~---~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~   64 (79)
T 2egp_A           11 EEVTCPICLE-LLTEPL---S-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS   64 (79)
T ss_dssp             CCCEETTTTE-ECSSCC---C-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred             cCCCCcCCCc-ccCCee---E-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence            4567999998 664321   1 2699999999988765432222234667888866554

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.53  E-value=0.23  Score=31.55  Aligned_cols=33  Identities=30%  Similarity=0.583  Sum_probs=26.9

Q ss_pred             ccccCCCCCccccCCccCCCccc--cccccccCCceE
Q psy8222          55 VWIPDNEAAVCMHCKRTQFTVLS--RRHHCRKCGSVV   89 (198)
Q Consensus        55 ~Wv~d~~~~~C~~C~~~~Fs~~~--RrhhCr~CG~vv   89 (198)
                      .|.. .....|..|++ .|+++.  |+|-|..||..|
T Consensus         6 ~~~~-~~~~~CPrCn~-~f~~~~sLr~HmkycCp~~v   40 (49)
T 2e72_A            6 SGQD-GGRKICPRCNA-QFRVTEALRGHMCYCCPEMV   40 (49)
T ss_dssp             SSCC-SSCCCCTTTCC-CCSSHHHHHHHHHHHCTTTC
T ss_pred             cccc-CCceeCCcccc-cccchHHHHhhhhhcCcchh
Confidence            4543 36789999999 999874  889999999875

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=81.59  E-value=0.96  Score=27.80  Aligned_cols=47  Identities=17%  Similarity=0.388  Sum_probs=30.0

Q ss_pred             CCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchH
Q psy8222          61 EAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCY  115 (198)
Q Consensus        61 ~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~  115 (198)
                      +...|.+|.. .|..-..-.....||++||..|...++.       ....|..|-
T Consensus         4 ~~~~C~IC~~-~~~~~~~~~~~~~C~H~f~~~Ci~~w~~-------~~~~CP~Cr   50 (55)
T 1iym_A            4 DGVECAVCLA-ELEDGEEARFLPRCGHGFHAECVDMWLG-------SHSTCPLCR   50 (55)
T ss_dssp             CSCCCTTTCC-CCCTTSCCEECSSSCCEECTTHHHHTTT-------TCCSCSSSC
T ss_pred             CCCcCccCCc-cccCCCceEECCCCCCcccHHHHHHHHH-------cCCcCcCCC
Confidence            4567999998 7754322222336999999999765531       134566664

>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}

Probab=80.40  E-value=0.77  Score=32.22  Aligned_cols=58  Identities=17%  Similarity=0.443  Sum_probs=37.0

Q ss_pred             CccccCCccCCCccccccccccCCce-----EeCCCCCCeeecCCCCCCCeeeccchHHhhcccc
Q psy8222          63 AVCMHCKRTQFTVLSRRHHCRKCGSV-----VCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRDK  122 (198)
Q Consensus        63 ~~C~~C~~~~Fs~~~RrhhCr~CG~v-----vC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~~~~  122 (198)
                      ..|..|+. ....-.+.+||..|+.-     ||..|-..-..++.=| .....|..|...+++.+
T Consensus         3 ~~CP~C~~-~l~~~~~~~~C~~C~~~~~~~afCPeCgq~Le~lkACG-A~~yFC~~C~~LiSkkr   65 (81)
T 2jrp_A            3 ITCPVCHH-ALERNGDTAHCETCAKDFSLQALCPDCRQPLQVLKACG-AVDYFCQNGHGLISKKR   65 (81)
T ss_dssp             CCCSSSCS-CCEECSSEEECTTTCCEEEEEEECSSSCSCCCEEEETT-EEEECCTTTTCCCCTTS
T ss_pred             CCCCCCCC-ccccCCCceECccccccCCCcccCcchhhHHHHHHhcC-CcCeeeccCCCEeecce
Confidence            46888887 66655667788888864     6777765543333322 23667777777666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	198
d1joca1	64	g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens)	1e-17
d1dvpa2	72	g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila me	1e-16
d1wfka_	88	g.50.1.1 (A:) Zinc finger FYVE domain containing p	2e-16
d1vfya_	67	g.50.1.1 (A:) vps27p protein {Baker's yeast (Sacch	1e-14
d1zbdb_	124	g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat	9e-13
d1y02a2	51	g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger pro	2e-11
d1zc3b1	109	b.55.1.1 (B:171-279) Exocyst complex protein EXO84	2e-06
d1ki1b2	142	b.55.1.1 (B:1439-1580) GEF of intersectin {Human (	3e-06
d1xcga2	140	b.55.1.1 (A:942-1081) Rho guanine nucleotide excha	2e-04
d1kz7a2	147	b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse	3e-04
d1ntya2	121	b.55.1.1 (A:1415-1535) Triple functional domain pr	3e-04
d1v61a_	132	b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (M	5e-04
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	6e-04
d2dfka2	162	b.55.1.1 (A:240-401) Rho guanine nucleotide exchan	0.002
d1txda2	114	b.55.1.1 (A:1020-1133) Rho guanine nucleotide exch	0.002

>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (175), Expect = 1e-17
 Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 2/63 (3%)

Query: 56  WIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCY 115
           W  DNE   CM C +  F+V  RRHHCR+CG++ CA CS K  L PS S KP+RVC  C+
Sbjct: 2   WAEDNEVQNCMACGK-GFSVTVRRHHCRQCGNIFCAECSAKNALTPS-SKKPVRVCDACF 59

Query: 116 DVL 118
           + L
Sbjct: 60  NDL 62

>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 72

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 69.3 bits (169), Expect = 1e-16
 Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 5/73 (6%)

Query: 49  AATHAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPS-QSAKP 107
            A  A  W       VC  C+  +FT  +R+HHCR CG V C  C+ K+  LP     K 
Sbjct: 3   TADTAPNWADGR---VCHRCRV-EFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKE 58

Query: 108 LRVCLTCYDVLSR 120
           +RVC  C+  L R
Sbjct: 59  VRVCDGCFAALQR 71

>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Zinc finger FYVE domain containing protein 19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.9 bits (168), Expect = 2e-16
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 61  EAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSR 120
             + C  C   +FT+  + + C+ CG   C  C +   L+P       +VC  C+ +L+R
Sbjct: 8   MESRCYGCAV-KFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTR 66

Query: 121 DK 122
             
Sbjct: 67  GS 68

>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: vps27p protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.5 bits (154), Expect = 1e-14
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)

Query: 56  WIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQS-AKPLRVCLTC 114
           WI  +    CM C + +F++L+R+HHCR CG V C   S+    LP     +P+RVC +C
Sbjct: 2   WIDSD---ACMICSK-KFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSC 57

Query: 115 YD 116
           ++
Sbjct: 58  FE 59

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.5 bits (146), Expect = 9e-13
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 3/61 (4%)

Query: 56  WIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCY 115
            +  +    C+ C      + S    C  C   VC  C  +     +    P+ +C  C 
Sbjct: 42  NVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET---SNNRPHPVWLCKICL 98

Query: 116 D 116
           +
Sbjct: 99  E 99

>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Rififylin (FYVE-RING finger protein Sakura)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (132), Expect = 2e-11
 Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 8/55 (14%)

Query: 65  CMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLS 119
           C  C    F   +R+  C  C    C  CS       SQ     R+CL C    +
Sbjct: 3   CKSCG-AHFANTARKQTCLDCKKNFCMTCS-------SQVGNGPRLCLLCQRFRA 49

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 2e-06
 Identities = 7/43 (16%), Positives = 18/43 (41%)

Query: 1   MELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRK 43
             +++ + +    +S    A  +  K+EW+  + +    L  K
Sbjct: 66  PPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRALSDK 108

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Length = 142

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 3e-06
 Identities = 8/47 (17%), Positives = 16/47 (34%)

Query: 1   MELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKK 47
                 + I    + + + A +  E+  W+  I    E  +    KK
Sbjct: 95  SGDEPIFHISHIDRVYTLRAESINERTAWVQKIKAASELYIETEKKK 141

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Length = 140

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 8/41 (19%), Positives = 20/41 (48%), Gaps = 5/41 (12%)

Query: 4   RNGWLIQTSS-----KSFAVHAATSTEKQEWMAHINKCIED 39
           +  + I  +S     + + + A TS++K  WM  + + + +
Sbjct: 99  KRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN 139

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Length = 147

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (86), Expect = 3e-04
 Identities = 7/43 (16%), Positives = 14/43 (32%)

Query: 2   ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKS 44
             +         + + + A T   K  W+  I K +   L+  
Sbjct: 92  TKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQAC 134

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 5   NGWLIQTSS--KSFAVHAATSTEKQEWMAHINKCIED 39
             W+ +T +      + A++   KQ+W+ HI + I++
Sbjct: 83  ALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQE 119

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]} Length = 132

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (84), Expect = 5e-04
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 6/47 (12%)

Query: 4   RNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPA 49
              + I  S+ +   VH   + + QEWM  +N+       KSG    
Sbjct: 91  DCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLT-----KSGPSSG 132

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 6e-04
 Identities = 7/34 (20%), Positives = 17/34 (50%)

Query: 7   WLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDL 40
            L     +++   A +  E ++W+  I+  ++DL
Sbjct: 72  ELTSQDRRTYEFTATSPAEARDWVDQISFLLKDL 105

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 162

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 5/40 (12%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 1   MELRNGWLI--QTSSKSFAVHAATSTEKQEWMAHINKCIE 38
           + ++N + +  + + +     A    EK  W+    +  +
Sbjct: 94  VSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERK 133

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 3/35 (8%)

Query: 4   RNGWLIQTSSKSFAV---HAATSTEKQEWMAHINK 35
           +  ++I  S     +    A T +EK  W   I +
Sbjct: 76  KALFVISMSDNGAQIYELVAQTVSEKTVWQDLICR 110

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d1joca1	64	Eea1 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1dvpa2	72	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	99.81
d1vfya_	67	vps27p protein {Baker's yeast (Saccharomyces cerev	99.77
d1wfka_	88	Zinc finger FYVE domain containing protein 19 {Mou	99.77
d1y02a2	51	Rififylin (FYVE-RING finger protein Sakura) {Human	99.5
d1zbdb_	124	Effector domain of rabphilin-3a {Rat (Rattus norve	99.27
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	98.38
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	97.91
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	97.88
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	97.68
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	97.61
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	97.58
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	97.58
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	97.57
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	97.55
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	97.53
d1kz7a2	147	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	97.51
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	97.46
d1ntya2	121	Triple functional domain protein TRIO {Human (Homo	97.36
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	97.27
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	97.24
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	97.19
d1wi1a_	126	Calcium-dependent activator protein for secretion,	97.19
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	97.17
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	97.17
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	97.06
d1txda2	114	Rho guanine nucleotide exchange factor 12 {Human (	97.06
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	97.04
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	97.03
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	96.99
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	96.99
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	96.84
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	96.77
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	96.74
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	96.72
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	96.7
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	96.65
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	96.64
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	96.61
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	96.54
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	96.48
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	96.45
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	96.18
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	96.17
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	95.88
d1wfla_	74	Zinc finger A20 domain containing protein 2 {Mouse	94.79
d1wffa_	85	ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus	94.3
d1wfha_	64	Zinc finger A20 and AN1 domains containing protein	94.14
d1fhoa_	119	UNC-89 {Nematode (Caenorhabditis elegans) [TaxId:	93.28
d1wfpa_	74	Zinc finger A20 and AN1 domains containing protein	92.33
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	84.44
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	82.33

>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.2e-22  Score=138.06  Aligned_cols=63  Identities=51%  Similarity=1.100  Sum_probs=59.1

Q ss_pred             ccccCCCCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHhhc
Q psy8222          55 VWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLS  119 (198)
Q Consensus        55 ~Wv~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~  119 (198)
                      .|+||.++..|+.|++ +|+++.||||||+||.|||+.|+.+++++|.. .+++|||+.||+.|+
T Consensus         1 rW~~d~~~~~C~~C~~-~F~~~~rrHHCR~CG~v~C~~Cs~~~~~~~~~-~~~~RVC~~C~~~l~   63 (64)
T d1joca1           1 KWAEDNEVQNCMACGK-GFSVTVRRHHCRQCGNIFCAECSAKNALTPSS-KKPVRVCDACFNDLQ   63 (64)
T ss_dssp             CCCCGGGCCBCTTTCC-BCCSSSCCEECTTTCCEECGGGSCEEECCTTC-SSCEEECHHHHHHTT
T ss_pred             CCCCcccCCcCcCcCC-cccCCccccchhhhCCeecccccCCceecCCC-CCccEehHHHHHHhc
Confidence            4999999999999999 99999999999999999999999999998874 479999999999885

>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=4e-21  Score=133.38  Aligned_cols=66  Identities=41%  Similarity=0.948  Sum_probs=59.6

Q ss_pred             CCCCccccCCCCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCC-CCeeeccchHHhhcc
Q psy8222          51 THAAVWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSA-KPLRVCLTCYDVLSR  120 (198)
Q Consensus        51 ~~~~~Wv~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~-~~~RVC~~C~~~l~~  120 (198)
                      +.+|.|+++   ..|+.|++ +|++++||||||+||.+||..|+.++++||..+. +|+|||+.||+.|+.
T Consensus         5 ~~~p~W~~~---~~C~~C~~-~F~~~~rrhhCr~CG~~~C~~C~~~~~~lp~~~~~~p~RVC~~C~~~l~~   71 (72)
T d1dvpa2           5 DTAPNWADG---RVCHRCRV-EFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQR   71 (72)
T ss_dssp             SCCCCCCCC---SBCTTTCC-BCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHHHHHHHH
T ss_pred             CCCCCCCcC---CccccCCC-cccCccccccccccCCeeChhhhCCceECcccCCCCCCEeCHHHHHHHHC
Confidence            456889975   46999999 9999999999999999999999999999998765 899999999999864

>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: vps27p protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=2.2e-20  Score=127.87  Aligned_cols=62  Identities=39%  Similarity=0.969  Sum_probs=56.1

Q ss_pred             ccccCCCCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCC-CCeeeccchHHhhcc
Q psy8222          55 VWIPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSA-KPLRVCLTCYDVLSR  120 (198)
Q Consensus        55 ~Wv~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~-~~~RVC~~C~~~l~~  120 (198)
                      .|+++   ..|+.|++ +|++++||||||.||.+||..|+.++++||..+. +|+|||+.||+.+..
T Consensus         1 ~W~~~---~~C~~C~~-~F~~~~rkhhCr~CG~~fC~~Cs~~~~~l~~~~~~~p~RVC~~C~~~~~~   63 (67)
T d1vfya_           1 DWIDS---DACMICSK-KFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYEF   63 (67)
T ss_dssp             CCCCC---SBCTTTCC-BCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTEEEEEEECHHHHHHHHH
T ss_pred             CCCcC---cccccCCC-cccCcccccccccCCCEecccccCCcEECcccCCCCCcEeCHHHHHHHHH
Confidence            48865   47999999 9999999999999999999999999999998865 899999999998754

>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Zinc finger FYVE domain containing protein 19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1.7e-19  Score=129.58  Aligned_cols=64  Identities=25%  Similarity=0.659  Sum_probs=58.3

Q ss_pred             CCCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHhhcccccC
Q psy8222          60 NEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSRDKTV  124 (198)
Q Consensus        60 ~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~~~~~~  124 (198)
                      .....|+.|++ +|++|+||||||+||.|||..|+.++++||..+.+++|||+.||+.|......
T Consensus         7 ~~~s~C~~C~~-~Fs~~~rrhhCr~CG~vfC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~~~~~~   70 (88)
T d1wfka_           7 GMESRCYGCAV-KFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGSSD   70 (88)
T ss_dssp             CCCSBCTTTCC-BCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHCCCC
T ss_pred             cccCcCcccCc-hhccccccccccccChhhChHHhCCccccCCCCCCCCeECHHHHHHHHhcccc
Confidence            35678999999 99999999999999999999999999999998889999999999999875433

>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Rififylin (FYVE-RING finger protein Sakura)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2e-15  Score=97.69  Aligned_cols=50  Identities=26%  Similarity=0.689  Sum_probs=41.7

Q ss_pred             CccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHHhhcc
Q psy8222          63 AVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYDVLSR  120 (198)
Q Consensus        63 ~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~~  120 (198)
                      ..|+.|++ +|++++||||||.||.+||..|+.++       .++.|||+.|+++..+
T Consensus         1 p~C~~C~~-~F~~~~rkhhCr~CG~~fC~~Cs~~~-------~~~~RvC~~C~~~r~~   50 (51)
T d1y02a2           1 PSCKSCGA-HFANTARKQTCLDCKKNFCMTCSSQV-------GNGPRLCLLCQRFRAT   50 (51)
T ss_dssp             CCCTTTCC-CCSSGGGCEECTTTCCEECGGGEEC-----------CCEEHHHHHHHHT
T ss_pred             CCccccCC-cccCCccCcccccCCcccCccccCCC-------CCCCeECHhHhhHhhc
Confidence            36999999 99999999999999999999998764       2466999999987653

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=1.4e-12  Score=98.07  Aligned_cols=95  Identities=18%  Similarity=0.337  Sum_probs=65.9

Q ss_pred             CChHHHHHHHHHHHHHHHHHH---HhcC-CCCCCCCCCccccCCCCCccccCCccCCCc-cccccccccCCceEeCCCCC
Q psy8222          21 ATSTEKQEWMAHINKCIEDLL---RKSG-KKPAATHAAVWIPDNEAAVCMHCKRTQFTV-LSRRHHCRKCGSVVCAPCSN   95 (198)
Q Consensus        21 ~s~~Ek~~Wi~~i~~~i~~ll---~~~g-~~~~~~~~~~Wv~d~~~~~C~~C~~~~Fs~-~~RrhhCr~CG~vvC~~Cs~   95 (198)
                      -|.+|++.|++.|+++.....   ++.+ ..........|+.+.....|+.|++ .|++ ++++|||+.||.+||..|+.
T Consensus         3 LT~eE~~~i~~VL~r~~~l~~~E~~rl~~l~~~l~~~~~~~~~~~~~~C~~C~~-~f~~~~~~~~~C~~C~~~~C~~C~~   81 (124)
T d1zbdb_           3 LTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDGVNRCILCGE-QLGMLGSASVVCEDCKKNVCTKCGV   81 (124)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCSSSBCSSSCC-BCSTTSCCEEECTTTCCEEETTSEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcCcccCC-cccCCCCCCCcCccCCcccccCCCC
Confidence            478999999999987653210   0000 0000011124667777899999999 9986 57899999999999999974


Q ss_pred             CeeecCCCCCCCeeeccchHHhhc
Q psy8222          96 KRFLLPSQSAKPLRVCLTCYDVLS  119 (198)
Q Consensus        96 ~~~~lp~~~~~~~RVC~~C~~~l~  119 (198)
                      ..   ......++++|+.|+....
T Consensus        82 ~~---~~~~~~~~w~C~~C~k~re  102 (124)
T d1zbdb_          82 ET---SNNRPHPVWLCKICLEQRE  102 (124)
T ss_dssp             EC---CCSSSSCCEEEHHHHHHHH
T ss_pred             Cc---cCCCCCCCEECccCcchHH
Confidence            32   2224478999999998764

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.38  E-value=3.4e-07  Score=65.32  Aligned_cols=42  Identities=17%  Similarity=0.287  Sum_probs=39.2

Q ss_pred             CCcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHHHHHh
Q psy8222           2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRK   43 (198)
Q Consensus         2 ~~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~~   43 (198)
                      .++|+|.|.++.++|.++|.|++||..|+++|++|++.+.++
T Consensus        67 ~~~n~f~i~~~~~~~~~~a~s~~eK~~W~~~l~~a~~~~~~~  108 (109)
T d1zc3b1          67 PMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRALSDK  108 (109)
T ss_dssp             TBSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEccCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhc
Confidence            478999999999999999999999999999999999988664

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=4.9e-06  Score=57.84  Aligned_cols=37  Identities=19%  Similarity=0.302  Sum_probs=34.8

Q ss_pred             CcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus         3 ~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      .+|.|.|.++.++|.|.|.|.+|+++||.+|+.+|.+
T Consensus        63 ~~~~F~i~~~~r~~~l~a~s~~~~~~Wi~ai~~~i~~   99 (100)
T d1faoa_          63 RVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQ   99 (100)
T ss_dssp             SSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccCCeEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            4789999999999999999999999999999999875

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=7e-06  Score=60.92  Aligned_cols=43  Identities=14%  Similarity=0.278  Sum_probs=36.4

Q ss_pred             CCcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHHHHHhc
Q psy8222           2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKS   44 (198)
Q Consensus         2 ~~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~~~   44 (198)
                      .+.|.|.+.++.++|.++|.|++||..||++|++||+.+++..
T Consensus        96 ~~~~~~~~~~~~~~~~l~a~s~~ek~~W~~~I~~Ai~~~~e~~  138 (142)
T d1ki1b2          96 GDEPIFHISHIDRVYTLRAESINERTAWVQKIKAASELYIETE  138 (142)
T ss_dssp             CC---CEEEETTEEEECBCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceeEEEecCCCEEEEEEeCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            3567889999999999999999999999999999999887654

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=3.1e-05  Score=53.49  Aligned_cols=38  Identities=16%  Similarity=0.479  Sum_probs=34.3

Q ss_pred             CcceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIEDL   40 (198)
Q Consensus         3 ~~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~~l   40 (198)
                      -+|.|.|.++. +++.|+|.+++|+++||++|+.+|+++
T Consensus        67 ~~~~f~i~~~~~~~~~f~a~s~~e~~~W~~ai~~~i~~l  105 (106)
T d1u5da1          67 KESCFELTSQDRRTYEFTATSPAEARDWVDQISFLLKDL  105 (106)
T ss_dssp             GGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CceeEEEEcCCCcEEEEEeCCHHHHHHHHHHHHHHHHHc
Confidence            36899999875 899999999999999999999999875

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=4e-05  Score=52.78  Aligned_cols=34  Identities=18%  Similarity=0.348  Sum_probs=31.6

Q ss_pred             CCcceEEEecCCeEEEEEeCChHHHHHHHHHHHH
Q psy8222           2 ELRNGWLIQTSSKSFAVHAATSTEKQEWMAHINK   35 (198)
Q Consensus         2 ~~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~   35 (198)
                      ..+|.|.|.++.++|.|.|.|++|+++||++|.+
T Consensus        68 ~~~~~f~i~t~~r~~~l~A~s~~e~~~Wi~al~~  101 (103)
T d1qqga1          68 KNKHLVALYTRDEHFAIAADSEAEQDSWYQALLQ  101 (103)
T ss_dssp             SCSSEEEEEESSCEEEEECSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEEeCCeEEEEEcCCHHHHHHHHHHHHh
Confidence            3578999999999999999999999999999975

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.58  E-value=3e-05  Score=56.99  Aligned_cols=37  Identities=24%  Similarity=0.391  Sum_probs=33.0

Q ss_pred             CCcceEEEecC-CeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           2 ELRNGWLIQTS-SKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         2 ~~~n~f~i~t~-~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      ..+|.|.|.++ .++|.|+|.|++||++||++|+++|+
T Consensus        89 ~~~~~f~i~~~~~~~~~l~a~s~eek~~Wv~~L~~~i~  126 (132)
T d1v61a_          89 GSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTK  126 (132)
T ss_dssp             SSCCCEEEECSSSCEEEECCCCSHHHHHHHHHHHHHHT
T ss_pred             CccceEEEeCCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            35789999987 58999999999999999999998874

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=6.1e-05  Score=51.15  Aligned_cols=35  Identities=17%  Similarity=0.440  Sum_probs=32.8

Q ss_pred             CcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCI   37 (198)
Q Consensus         3 ~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i   37 (198)
                      .++.|.|.++.++|.|.|.+++|+++||++|+.|+
T Consensus        64 ~~~~F~i~~~~r~~~l~A~s~~e~~~Wi~aL~~Aa   98 (99)
T d2coca1          64 SGHVWKLQWAKQSWYLSASSAELQQQWLETLSTAA   98 (99)
T ss_dssp             SSEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCcEEEEECCCHHHHHHHHHHHHHhc
Confidence            46889999999999999999999999999999875

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=6e-05  Score=51.47  Aligned_cols=37  Identities=27%  Similarity=0.435  Sum_probs=34.4

Q ss_pred             CcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus         3 ~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      ..|.|.|.++.++|.|.|.+++|+++|+.+|+.||..
T Consensus        65 ~~~~f~i~~~~~~~~~~a~s~~e~~~W~~aI~~ai~~  101 (103)
T d1eaza_          65 RDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVA  101 (103)
T ss_dssp             CSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999864

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.55  E-value=5.8e-05  Score=56.99  Aligned_cols=40  Identities=13%  Similarity=0.271  Sum_probs=34.1

Q ss_pred             CCcceEEEe--cCCeEEEEEeCChHHHHHHHHHHHHHHHHHH
Q psy8222           2 ELRNGWLIQ--TSSKSFAVHAATSTEKQEWMAHINKCIEDLL   41 (198)
Q Consensus         2 ~~~n~f~i~--t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll   41 (198)
                      .++|+|.|.  +..++|.|+|.|++||..||++|++++..+.
T Consensus        95 ~~~~~f~i~~~~~~~~~~~~A~s~~eK~~W~~~l~~~~~~~~  136 (162)
T d2dfka2          95 SMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQ  136 (162)
T ss_dssp             EESSEEEEEESSSSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             cccceEEEEECCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence            367999997  4457999999999999999999999877543

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=5.7e-05  Score=52.25  Aligned_cols=36  Identities=14%  Similarity=0.484  Sum_probs=34.2

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      +|.|.|.++.++|.|.|.|.+|+++|+++|+.+|..
T Consensus        58 ~~~f~i~~~~~~~~l~a~s~~e~~~Wi~ai~~~i~~   93 (102)
T d2coda1          58 DNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKS   93 (102)
T ss_dssp             TTEEEEEESSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ceeEEEEcCCcEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence            689999999999999999999999999999999875

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=7.2e-05  Score=56.00  Aligned_cols=39  Identities=18%  Similarity=0.350  Sum_probs=33.2

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLR   42 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~   42 (198)
                      ...|.+.++..+|.|+|.|++||+.|+++|+++|+..+.
T Consensus        94 ~f~~~~~~~~~~~~l~a~s~eeK~~W~~~I~~~l~~q~~  132 (147)
T d1kz7a2          94 KFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQ  132 (147)
T ss_dssp             EEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence            345566689999999999999999999999999986543

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=6.5e-05  Score=57.04  Aligned_cols=52  Identities=13%  Similarity=0.332  Sum_probs=40.9

Q ss_pred             CcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccc
Q psy8222           3 LRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLLRKSGKKPAATHAAVWIP   58 (198)
Q Consensus         3 ~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~~~g~~~~~~~~~~Wv~   58 (198)
                      ..+.|.|.++.++|+|.|.|.+|+++||++|+++|..    ........|+..|..
T Consensus        97 ~~~~F~I~t~~rt~~l~A~s~eE~~~WI~aL~~~i~~----~~~~~~~~h~~~~~~  148 (169)
T d1btka_          97 FPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVIRY----NSDLVQKYHPCFWID  148 (169)
T ss_dssp             CCEEEEEEETTCCEEEEESCHHHHHHHHHHHHHHHTT----CSCCCSEECSSCEET
T ss_pred             cCcceEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHh----CcccccccCcccccC
Confidence            4588999999999999999999999999999999874    122223445666664

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=9.7e-05  Score=52.92  Aligned_cols=37  Identities=24%  Similarity=0.479  Sum_probs=32.3

Q ss_pred             CcceEEEe-----cCCeEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQ-----TSSKSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus         3 ~~n~f~i~-----t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      .++.|.|.     ++.++|.++|.|+++|+.||++|+++|++
T Consensus        78 ~~~~f~i~~~~~~~~~~~~~l~a~s~~eK~~W~~~I~~~i~e  119 (121)
T d1ntya2          78 DPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQE  119 (121)
T ss_dssp             CTTEEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            46789884     56788999999999999999999999875

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=0.00014  Score=51.73  Aligned_cols=36  Identities=14%  Similarity=0.379  Sum_probs=32.6

Q ss_pred             CcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         3 ~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      ..+.|.|.++.+.|.|.|.|++|+++||++|++|+.
T Consensus        85 ~~~~~~~~~~~r~~~l~Aes~~e~~~Wi~aL~~A~~  120 (126)
T d1v5pa_          85 TPFCFVINALSQRYFLQANDQKDLKDWVEALNQASK  120 (126)
T ss_dssp             CSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHTTT
T ss_pred             ccceEEEcCCCeeEEEECCCHHHHHHHHHHHHHHhc
Confidence            357899999999999999999999999999998854

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00028  Score=51.82  Aligned_cols=37  Identities=22%  Similarity=0.425  Sum_probs=33.2

Q ss_pred             cceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIEDL   40 (198)
Q Consensus         4 ~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~~l   40 (198)
                      +|.|.|.+++ ++|.|.|.+.+|+++||.+|+.+|...
T Consensus        89 ~~~F~i~~~~~~~~~l~A~s~~e~~~Wi~aL~~~i~~~  126 (150)
T d1wg7a_          89 RFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLN  126 (150)
T ss_dssp             TTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCeEEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence            5789999876 799999999999999999999998754

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00022  Score=52.10  Aligned_cols=36  Identities=11%  Similarity=0.222  Sum_probs=33.7

Q ss_pred             CcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         3 ~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      .+|.|.|.++.+.|.|.|.|.+|+++|+.+|+.++.
T Consensus        71 ~~~~F~i~~~~~~~~f~Aes~~e~~~Wi~~I~~v~~  106 (136)
T d1x1fa1          71 NCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTE  106 (136)
T ss_dssp             CCCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             ccceeeecCCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999998876

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00025  Score=50.20  Aligned_cols=35  Identities=6%  Similarity=0.175  Sum_probs=31.7

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      .+-|.|.++.++|.|.|.+.+|+++||++|+.|+.
T Consensus        76 ~~~~~i~~~~r~~~f~A~s~~e~~~Wv~al~~a~~  110 (126)
T d1wi1a_          76 RAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATG  110 (126)
T ss_dssp             SSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             ceeEEeccCCeEEEEEECCHHHHHHHHHHHHHHHH
Confidence            35578999999999999999999999999998875

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00019  Score=51.74  Aligned_cols=36  Identities=17%  Similarity=0.280  Sum_probs=32.9

Q ss_pred             CcceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         3 ~~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      -+|.|.|.++.+.|.|.|.|++|+++||.+|+.++.
T Consensus        74 r~~~F~i~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~  109 (133)
T d2j59m1          74 RKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQESSN  109 (133)
T ss_dssp             CSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             cCceeEEecCCCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            368899999999999999999999999999988763

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0003  Score=47.64  Aligned_cols=35  Identities=29%  Similarity=0.412  Sum_probs=30.9

Q ss_pred             CcceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCI   37 (198)
Q Consensus         3 ~~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i   37 (198)
                      .+|.|.|.+++ ++|.|.|.|++|+++||++|+.||
T Consensus        68 ~~~~~~~~~~~~~~~~~~a~s~~e~~~W~~ai~~a~  103 (104)
T d2i5fa1          68 EENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS  103 (104)
T ss_dssp             CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            46788888665 889999999999999999999887

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.06  E-value=0.00085  Score=47.25  Aligned_cols=39  Identities=15%  Similarity=0.401  Sum_probs=33.0

Q ss_pred             cceEEEec-CCeEEEEEeCChHHHHHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQT-SSKSFAVHAATSTEKQEWMAHINKCIEDLLR   42 (198)
Q Consensus         4 ~n~f~i~t-~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~   42 (198)
                      ++.|.|.+ ..++|.|.|.|.+|+++||++|+.|+....+
T Consensus        68 ~~~f~i~~~~~~~~~f~a~s~~e~~~W~~al~~a~~~~~~  107 (119)
T d1omwa2          68 RKCLLLKIRGGKQFVLQCDSDPELVQWKKELRDAYREAQQ  107 (119)
T ss_dssp             CEEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence            46677775 5689999999999999999999999887544

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=97.06  E-value=0.00033  Score=49.95  Aligned_cols=35  Identities=23%  Similarity=0.369  Sum_probs=29.3

Q ss_pred             cceEEEecCC---eEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSS---KSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         4 ~n~f~i~t~~---KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      ++.|.|.+..   ..|.|+|.|++||+.||++|++++.
T Consensus        76 ~~~fli~~~~~~~~~y~l~A~s~~eK~~W~~~I~~~~~  113 (114)
T d1txda2          76 KALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAA  113 (114)
T ss_dssp             CEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEecCCCceEEEEEcCCHHHHHHHHHHHHHHhc
Confidence            5678887543   4689999999999999999999875

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00062  Score=47.12  Aligned_cols=40  Identities=23%  Similarity=0.438  Sum_probs=33.6

Q ss_pred             CcceEEEec----CCeEEEEEeCChHHHHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQT----SSKSFAVHAATSTEKQEWMAHINKCIEDLLR   42 (198)
Q Consensus         3 ~~n~f~i~t----~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll~   42 (198)
                      .+|.|.|..    ..+.+.++|.|++|+++||++|+.++..+..
T Consensus        70 ~~~~f~i~~~~~~~~~~~~f~a~s~~e~~~Wi~ai~~~~~~~~~  113 (118)
T d1unqa_          70 RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKK  113 (118)
T ss_dssp             STTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEeccccceeEEEEEeCCHHHHHHHHHHHHHHHHHhhc
Confidence            568899874    3356889999999999999999999987654

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.00037  Score=48.20  Aligned_cols=35  Identities=14%  Similarity=0.345  Sum_probs=31.4

Q ss_pred             CcceEEEecC-CeEEEEEeCChHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTS-SKSFAVHAATSTEKQEWMAHINKCI   37 (198)
Q Consensus         3 ~~n~f~i~t~-~KSf~v~A~s~~Ek~~Wi~~i~~~i   37 (198)
                      .+|.|.|.++ .++|.+.|.+++|+++|+++|+.+|
T Consensus        75 ~~~~f~i~~~~~~~~~~~a~s~~e~~~W~~ai~~~i  110 (111)
T d1u5fa1          75 KDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL  110 (111)
T ss_dssp             GGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             ccceEEEEccCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence            5689999886 5799999999999999999999875

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.99  E-value=0.00056  Score=46.68  Aligned_cols=36  Identities=25%  Similarity=0.306  Sum_probs=31.6

Q ss_pred             CcceEEEecCC---eEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS---KSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         3 ~~n~f~i~t~~---KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      .+|.|.|.++.   ++|.|.|.+.+|+.+||.+|++++.
T Consensus        61 ~~~~f~i~~~~~~~~~~~~~a~s~~e~~~Wi~ai~~~~~   99 (101)
T d2fjla1          61 RLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQ   99 (101)
T ss_dssp             CSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             ccceeEEeccccccEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            46789998764   7899999999999999999998864

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=96.99  E-value=0.0006  Score=47.86  Aligned_cols=37  Identities=16%  Similarity=0.371  Sum_probs=32.4

Q ss_pred             CcceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus         3 ~~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      .+|.|.|.+.. +.|.|.|.+++|+++||++|+.+|..
T Consensus        81 ~~~~f~i~~~~~~~~~l~a~s~~e~~~Wi~aI~~a~~~  118 (123)
T d1wjma_          81 RKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIAS  118 (123)
T ss_dssp             CSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cCcEEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            46789988765 78999999999999999999999874

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00071  Score=47.00  Aligned_cols=36  Identities=19%  Similarity=0.366  Sum_probs=30.5

Q ss_pred             CcceEEEecCC--------eEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS--------KSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         3 ~~n~f~i~t~~--------KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      .+|.|.|.++.        +.|.|.|.+++|+++||++|+.|+.
T Consensus        69 ~~~~f~l~~~~~~~~~~~~~~~~~~a~s~ee~~~Wi~aI~~a~~  112 (118)
T d1v89a_          69 GKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAG  112 (118)
T ss_dssp             CCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCCcceecCCcEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            46778887554        6799999999999999999999875

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.77  E-value=0.00099  Score=45.82  Aligned_cols=36  Identities=8%  Similarity=0.184  Sum_probs=31.1

Q ss_pred             CcceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         3 ~~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      -+|.|.|.++. +.|.|.|.+++|+++||.+|+.|+.
T Consensus        67 ~~~~F~i~~~~~~~~~f~a~s~~~~~~Wi~ai~~a~~  103 (109)
T d1wgqa_          67 ESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTV  103 (109)
T ss_dssp             SSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHHS
T ss_pred             cceeeeeecccceEEEEECCCHHHHHHHHHHHHHHhc
Confidence            36899998766 5678899999999999999999874

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.74  E-value=0.00045  Score=47.91  Aligned_cols=35  Identities=17%  Similarity=0.490  Sum_probs=31.4

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      .+-|.+.++.++|.|.|.+++|+++||.+|+.+|.
T Consensus        77 ~~~~~~~~~~~~~~~~a~s~~e~~~Wv~~l~~ai~  111 (117)
T d1v5ua_          77 KAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLS  111 (117)
T ss_dssp             TTCEEEEESSCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred             ceEEEeeCCCcEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            35688899999999999999999999999988764

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=96.72  E-value=0.00078  Score=45.99  Aligned_cols=34  Identities=15%  Similarity=0.377  Sum_probs=30.2

Q ss_pred             CcceEEEecCC-eEEEEEeCChHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKC   36 (198)
Q Consensus         3 ~~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~   36 (198)
                      -+|.|.|.+++ ++|.+.|.+++|+++||++|+.|
T Consensus        72 ~~~~f~i~~~~~~~~~~~a~s~~e~~~W~~ai~~A  106 (106)
T d1btna_          72 KKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             SSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             CcceEeecccCCCEEEEECCCHHHHHHHHHHHHhC
Confidence            46899999875 89999999999999999999864

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.0012  Score=44.56  Aligned_cols=34  Identities=15%  Similarity=0.172  Sum_probs=29.0

Q ss_pred             CcceEEEec-CCeEEEEEeCChHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQT-SSKSFAVHAATSTEKQEWMAHINKC   36 (198)
Q Consensus         3 ~~n~f~i~t-~~KSf~v~A~s~~Ek~~Wi~~i~~~   36 (198)
                      -++.|.|.+ ..++|.|.|.|.+|+++||.+|+.+
T Consensus        58 ~~~~f~~~~~~~~~~~l~A~s~~e~~~Wi~~L~~~   92 (95)
T d2cofa1          58 HLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSE   92 (95)
T ss_dssp             BSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ceecceeccccceeEEeeCCCHHHHHHHHHHHHHH
Confidence            357788875 4589999999999999999999865

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.001  Score=49.79  Aligned_cols=37  Identities=11%  Similarity=0.346  Sum_probs=32.5

Q ss_pred             cceEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSKSFAVHAATSTEKQEWMAHINKCIEDLL   41 (198)
Q Consensus         4 ~n~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~ll   41 (198)
                      ++.|.|.++.|+|.|.|. ..++++|+.+|+.+++...
T Consensus       102 ~~~F~I~t~~Rty~l~a~-~~d~~~Wv~aI~~v~~~~~  138 (147)
T d1w1ha_         102 FKTFFVHTPNRTYYLMDP-SGNAHKWCRKIQEVWRQRY  138 (147)
T ss_dssp             TTEEEEECSSCEEEEECT-TSCHHHHHHHHHHHHHHHH
T ss_pred             CceEEEecCceEEEEEcC-hHHHHHHHHHHHHHHHHHh
Confidence            689999999999999875 5689999999999988653

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0021  Score=44.32  Aligned_cols=38  Identities=26%  Similarity=0.338  Sum_probs=32.8

Q ss_pred             CcceEEEec-CCeEEEEEeCChHHHHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQT-SSKSFAVHAATSTEKQEWMAHINKCIEDL   40 (198)
Q Consensus         3 ~~n~f~i~t-~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~l   40 (198)
                      .++.|.|.+ +.+.|.|.|.|.+|+++|+.+|+.+|+.+
T Consensus        65 ~~~~f~l~~~~~~~~~~~a~s~~e~~~Wi~ai~~ai~~~  103 (113)
T d1plsa_          65 RMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCI  103 (113)
T ss_dssp             SSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEecCCCeEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence            356777775 56899999999999999999999999875

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00039  Score=47.87  Aligned_cols=34  Identities=26%  Similarity=0.454  Sum_probs=29.3

Q ss_pred             CcceEEEecCC--eEEEEEeCChHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSS--KSFAVHAATSTEKQEWMAHINKC   36 (198)
Q Consensus         3 ~~n~f~i~t~~--KSf~v~A~s~~Ek~~Wi~~i~~~   36 (198)
                      -++.|.|.++.  ++|.|.|.|.+|+++||.+|+.+
T Consensus        65 ~~~~f~i~~~~~~~~~~l~A~s~~e~~~Wi~al~~v  100 (101)
T d2elba2          65 RRYCFQITSFDGKKSSILQAESKKDHEEWICTINNI  100 (101)
T ss_dssp             SSSSSEECCCSSSCCCCEECSSHHHHHHHHHHHHHT
T ss_pred             CcceEEEEeecccceEEEECCCHHHHHHHHHHHHhc
Confidence            35789998754  89999999999999999999863

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.0017  Score=43.93  Aligned_cols=35  Identities=11%  Similarity=0.330  Sum_probs=30.6

Q ss_pred             CcceEEEecC-CeEEEEEeCChHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTS-SKSFAVHAATSTEKQEWMAHINKCI   37 (198)
Q Consensus         3 ~~n~f~i~t~-~KSf~v~A~s~~Ek~~Wi~~i~~~i   37 (198)
                      .++.|.|.++ .+.|.|.|.|++|+++|+++|+.|.
T Consensus        71 ~~~~~~i~~~~~~~~~~~a~s~~e~~~Wi~al~~A~  106 (107)
T d1upqa_          71 RRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRAS  106 (107)
T ss_dssp             SSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEcCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            4678888876 5899999999999999999999874

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.48  E-value=0.0017  Score=45.31  Aligned_cols=34  Identities=26%  Similarity=0.577  Sum_probs=29.9

Q ss_pred             eEEEecCCeEEEEEeCChHHHHHHHHHHHHHHHH
Q psy8222           6 GWLIQTSSKSFAVHAATSTEKQEWMAHINKCIED   39 (198)
Q Consensus         6 ~f~i~t~~KSf~v~A~s~~Ek~~Wi~~i~~~i~~   39 (198)
                      .+.+.+..+.|.|.|.|.+|+++||.+|+.+|..
T Consensus        88 ~~~~~~~~~~~~f~a~s~~e~~~Wi~aL~~~i~~  121 (127)
T d1fgya_          88 GRVVEGNHVVYRISAPSPEEKEEWMKSIKASISR  121 (127)
T ss_dssp             SCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             eeEeeCCCeEEEEECCCHHHHHHHHHHHHHHHcc
Confidence            3456678889999999999999999999999875

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.45  E-value=0.0019  Score=45.18  Aligned_cols=37  Identities=14%  Similarity=0.317  Sum_probs=32.8

Q ss_pred             CCcceEEEecCC-eEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222           2 ELRNGWLIQTSS-KSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus         2 ~~~n~f~i~t~~-KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      ..+|.|.|.++. +.+.|.|.+++|+++||.+|+.+++
T Consensus        82 ~~~~~~~l~~~~~~~~~f~a~s~~d~~~Wv~al~~~~~  119 (122)
T d1droa_          82 KKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSD  119 (122)
T ss_dssp             SSTTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             cccceEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHh
Confidence            357889999887 7899999999999999999998875

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0015  Score=45.68  Aligned_cols=35  Identities=14%  Similarity=0.288  Sum_probs=30.5

Q ss_pred             CcceEEEecCCeEEEEEe-----------CChHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTSSKSFAVHA-----------ATSTEKQEWMAHINKCI   37 (198)
Q Consensus         3 ~~n~f~i~t~~KSf~v~A-----------~s~~Ek~~Wi~~i~~~i   37 (198)
                      -+|.|.|.|+.++|+|.|           .++++.++|+++|+.|+
T Consensus        66 ~~~~F~I~T~~rtyy~~~~~~~~~~~~s~~~~~~~~~W~~aI~~A~  111 (112)
T d2coaa1          66 NPHCFEIVTANATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQAL  111 (112)
T ss_dssp             CCEEEEEECSSCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred             CccEEEEEeCCeEEEEecCCccccccccccChHHHHHHHHHHHHhh
Confidence            457899999999999966           67888999999999875

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0023  Score=44.49  Aligned_cols=35  Identities=11%  Similarity=0.227  Sum_probs=29.4

Q ss_pred             CcceEEEecC--------CeEEEEEeCChHHHHHHHHHHHHHH
Q psy8222           3 LRNGWLIQTS--------SKSFAVHAATSTEKQEWMAHINKCI   37 (198)
Q Consensus         3 ~~n~f~i~t~--------~KSf~v~A~s~~Ek~~Wi~~i~~~i   37 (198)
                      -+|.|.|.++        .++|.|.|.+.+|+.+||++|..|.
T Consensus        65 ~~~~F~l~~~~~~~~~~~~r~~~l~a~s~ed~~~W~~al~~A~  107 (111)
T d2dyna_          65 SKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAG  107 (111)
T ss_dssp             CSEEEEEEESSCSCSBTTBSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred             ccccEEeeeccccccccCceeEEEECCCHHHHHHHHHHHHHhc
Confidence            4678888754        4789999999999999999998763

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0041  Score=43.69  Aligned_cols=25  Identities=12%  Similarity=0.440  Sum_probs=22.1

Q ss_pred             eEEEEEeCChHHHHHHHHHHHHHHH
Q psy8222          14 KSFAVHAATSTEKQEWMAHINKCIE   38 (198)
Q Consensus        14 KSf~v~A~s~~Ek~~Wi~~i~~~i~   38 (198)
                      +.|.|.|.+++|+++||++|+.+|.
T Consensus       100 ~~~~l~A~s~~e~~~Wi~al~~~i~  124 (130)
T d1v88a_         100 SYLIIRATSESDGRCWMDALELALK  124 (130)
T ss_dssp             SCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHhh
Confidence            4478899999999999999998875

>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 domain containing protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.79  E-value=0.013  Score=38.95  Aligned_cols=33  Identities=24%  Similarity=0.852  Sum_probs=26.6

Q ss_pred             ccCCCCCccccCCccCCCccccccccccCCceEeCCC
Q psy8222          57 IPDNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPC   93 (198)
Q Consensus        57 v~d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~C   93 (198)
                      ++......|..|++ +..|+.  ..|| ||.+||..+
T Consensus        20 ~~k~k~~RC~~C~K-Kl~l~~--~~Cr-Cg~~FC~~H   52 (74)
T d1wfla_          20 LPKPKKNRCFMCRK-KVGLTG--FDCR-CGNLFCGLH   52 (74)
T ss_dssp             CCCSCTTBCSSSCC-BCGGGC--EECT-TSCEECSSS
T ss_pred             CCCCCCCcChhhCC-ccccee--eEcc-CCCEehhhc
Confidence            34445678999999 998873  6897 999999876

>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: ANUBL1 (AN1, ubiquitin-like, homolog)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.30  E-value=0.022  Score=38.85  Aligned_cols=33  Identities=24%  Similarity=0.668  Sum_probs=26.3

Q ss_pred             CCCCCccccCCccCCCccccccccccCCceEeCCCC
Q psy8222          59 DNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCS   94 (198)
Q Consensus        59 d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs   94 (198)
                      ......|..|.+ ..+|+. .+.|| ||.+||..+-
T Consensus        22 k~~~~RC~~C~K-Kl~l~~-~~~Cr-Cg~~FC~~HR   54 (85)
T d1wffa_          22 KKIMKHCFLCGK-KTGLAT-SFECR-CGNNFCASHR   54 (85)
T ss_dssp             CCCCCBCSSSCC-BCSSSS-CEECT-TCCEECTTTC
T ss_pred             cccCCcChhcCC-eecCCc-CeecC-CCCEehhhcC
Confidence            344568999999 998865 47897 9999998773

>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At2g36320
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.14  E-value=0.016  Score=37.45  Aligned_cols=31  Identities=23%  Similarity=0.771  Sum_probs=25.7

Q ss_pred             CCCCccccCCccCCCccccccccccCCceEeCCCC
Q psy8222          60 NEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCS   94 (198)
Q Consensus        60 ~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs   94 (198)
                      .....|..|.+ +.+|+.  ..|| ||.+||..+-
T Consensus        13 ~k~~RC~~C~K-Kl~l~~--~~Cr-Cg~~FC~~HR   43 (64)
T d1wfha_          13 QRPNRCTVCRK-RVGLTG--FMCR-CGTTFCGSHR   43 (64)
T ss_dssp             SSCCCCTTTCC-CCCTTC--EECS-SSCEECTTTC
T ss_pred             CCCCcChhhCC-Ccccee--eecc-CCCEehhhcC
Confidence            45678999999 998874  6897 9999998763

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: UNC-89
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.28  E-value=0.007  Score=43.61  Aligned_cols=38  Identities=11%  Similarity=0.197  Sum_probs=30.1

Q ss_pred             cceEEEecCCe-------EEEEEeCChHHHHHHHHHHHHHHHHHH
Q psy8222           4 RNGWLIQTSSK-------SFAVHAATSTEKQEWMAHINKCIEDLL   41 (198)
Q Consensus         4 ~n~f~i~t~~K-------Sf~v~A~s~~Ek~~Wi~~i~~~i~~ll   41 (198)
                      .+.|.|.....       +|.++|.|+++|+.|++.|.+++++..
T Consensus        71 ~~~F~i~~~~~~~~~~~~~~~~~a~s~~~K~~Wv~~I~e~~~~~~  115 (119)
T d1fhoa_          71 EDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDIAEEQEKYA  115 (119)
T ss_dssp             CCEEEEECCSTTCCCBCCCCCSSSSCSHHHHHHHHHHHTCCHHHH
T ss_pred             CcEEEEEeCCCCCCcceEEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence            46788874432       677888999999999999998888764

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.33  E-value=0.075  Score=35.16  Aligned_cols=32  Identities=31%  Similarity=0.855  Sum_probs=25.2

Q ss_pred             CCCCCccccCCccCCCccccccccccCCceEeCCCC
Q psy8222          59 DNEAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCS   94 (198)
Q Consensus        59 d~~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs   94 (198)
                      ......|..|.+ +..|+.  +-|| ||.+||..+-
T Consensus        22 k~kk~RC~~C~K-Kl~l~~--~~Cr-Cg~~FC~~HR   53 (74)
T d1wfpa_          22 KSTATRCLSCNK-KVGVTG--FKCR-CGSTFCGTHR   53 (74)
T ss_dssp             TCCCCBCSSSCC-BCTTTC--EECT-TSCEECTTTC
T ss_pred             CCCCCcChhcCC-ccCCCc--eecC-CCChhhhccC
Confidence            345788999999 998873  5675 9999998763

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.44  E-value=0.22  Score=33.58  Aligned_cols=31  Identities=16%  Similarity=0.506  Sum_probs=23.9

Q ss_pred             CccccCCccCCCccccccccccCCceEeCCCCCCe
Q psy8222          63 AVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKR   97 (198)
Q Consensus        63 ~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~   97 (198)
                      -.|.+|.. .|   ..-..+..||++||..|...+
T Consensus        23 l~C~IC~~-~~---~~pv~~~~CgH~fC~~Ci~~~   53 (97)
T d1jm7b_          23 LRCSRCTN-IL---REPVCLGGCEHIFCSNCVSDC   53 (97)
T ss_dssp             TSCSSSCS-CC---SSCBCCCSSSCCBCTTTGGGG
T ss_pred             CCCccCCc-hh---hcCceeCCCCCchhHHHHHHH
Confidence            46999998 55   344566789999999997665

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=82.33  E-value=0.32  Score=30.64  Aligned_cols=45  Identities=18%  Similarity=0.295  Sum_probs=32.3

Q ss_pred             CCCccccCCccCCCccccccccccCCceEeCCCCCCeeecCCCCCCCeeeccchHH
Q psy8222          61 EAAVCMHCKRTQFTVLSRRHHCRKCGSVVCAPCSNKRFLLPSQSAKPLRVCLTCYD  116 (198)
Q Consensus        61 ~~~~C~~C~~~~Fs~~~RrhhCr~CG~vvC~~Cs~~~~~lp~~~~~~~RVC~~C~~  116 (198)
                      .+..|.+|.. .|.-   ...+..||++||..|...++..       .+-|..|-.
T Consensus         4 ~~d~C~IC~~-~~~~---~~~~~~C~H~Fc~~Ci~~w~~~-------~~~CP~CR~   48 (68)
T d1chca_           4 VAERCPICLE-DPSN---YSMALPCLHAFCYVCITRWIRQ-------NPTCPLCKV   48 (68)
T ss_dssp             CCCCCSSCCS-CCCS---CEEETTTTEEESTTHHHHHHHH-------SCSTTTTCC
T ss_pred             CCCCCccCCc-CccC---CcEEeCCCCcCcHHHHHHHHHh-------CCcCCCCCc
Confidence            5778999998 7743   2346789999999998776532       245877743