Psyllid ID: psy824

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------52
Protein Sequence
MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISKSLKRIRPHHALRRSVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKGRTD
Secondary Structure (PSIPRED)
cccccEEEEEEEcccccccccccccccccEEEEcccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccccccEEEEEEccccccccEEccccccccccccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEEEEccccccEEEEEEcccEEEEEEEcccccccEEEEEEEcccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccHHEEEEEEcccEccccccEccEccccEEEEEEcccccEEEEEEccccccccHHHcccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEcccEccccccEccEccccEEEEEEcccccEEEEEEccEEEEEEHHHEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccEEEEEEHHHHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHcccHccccccccccccHHHHHcHcHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccEEEcccEEEEccEEEEEcccccccEEEEEEEccEEEEEEcccccccEEEEEcEEccccEEEEEccccccccc
Coil and Loop (DISEMBL)
MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLdrdwwwgtrgEAFEHLSQIIINhsispncdiskslkrirphhalrrsvsqplginelspllrrkpigtrpgdgtnslccsddellsdsessvtslgmdEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLdrdwwwgtrgeasgwfpSAFVRLRVSQEDTVEDCLAALASggsktlrrrtsisllsndqVRSRVVRELINTERDFVKVLHDVsegylaecrrrndmfspeQIQTIFGNLEDILAFQSSFLEDLEtkldwdapykscigetflkhksgfhphlgvtVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAarchssrpptdhpdyVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLnidtsqiinlpdgkgrtd
Flexible Loop (DISEMBL)
MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISKSLKRIRPHHalrrsvsqplginelspllrrkpigtrpgdgtnslccSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAAlasggsktlrrrtsisllsndqvrsrVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAarchssrpptdhpdyvKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVykarlnidtsqiinlpdgkgrtd
Low Complexity Region (SEG)
MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISKSLKRIRPHHALRRSVSQPLGINELSPLLRRKPIGTRPGDGTNslccsddellsdsessVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKGRTD
Disordered region (IsUnstruct)
****FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISKSLK**********************************************************LGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGG***L***TSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERAL**************************************VKITEALEAMRDVAML**********************************QLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIIN*********
Disordered Region (DISOPRED)
***DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEH************************************LGINEL***********************************************AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWF*********************************************SRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAA****************EFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRV**GMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQII***D******
Disordered Region (DISEMBL)
MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISKSLKRIRPHHALRRSVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELA*************TDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKGRTD
Disordered Region (DISPRO)
*DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH**************************************************************************DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS****************************LSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPD******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISKSLKRIRPHHALRRSVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKGRTD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	518	2.2.26 [Sep-21-2011]
Q9NR80	690	Rho guanine nucleotide ex	yes	N/A	0.722	0.542	0.393	6e-80
Q5DU57	656	Spermatogenesis-associate	yes	N/A	0.685	0.541	0.391	6e-78
Q96N96	652	Spermatogenesis-associate	no	N/A	0.685	0.544	0.384	3e-76
Q3UTH8	516	Rho guanine nucleotide ex	no	N/A	0.691	0.693	0.396	3e-74
Q58DL7	561	Rho guanine nucleotide ex	no	N/A	0.691	0.638	0.394	6e-74
O43307	516	Rho guanine nucleotide ex	no	N/A	0.691	0.693	0.394	6e-74
Q7TNR9	484	Rho guanine nucleotide ex	no	N/A	0.666	0.712	0.396	2e-73
Q5RDK0	564	Rho guanine nucleotide ex	no	N/A	0.691	0.634	0.396	2e-73
Q9QX73	493	Rho guanine nucleotide ex	no	N/A	0.691	0.726	0.389	2e-72
Q69ZK0	1650	Phosphatidylinositol 3,4,	no	N/A	0.532	0.167	0.280	4e-27

>sp|Q9NR80|ARHG4_HUMAN Rho guanine nucleotide exchange factor 4 OS=Homo sapiens GN=ARHGEF4 PE=1 SV=3

 Score =  298 bits (763), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 166/422 (39%), Positives = 249/422 (59%), Gaps = 48/422 (11%)

Query: 107 PGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEV 166
           PG G   L    +EL+SD              VV AEA+WDHV M+ +ELGF+AGDVIEV
Sbjct: 178 PGGGGEQLAI--NELISDGS------------VVCAEALWDHVTMDDQELGFKAGDVIEV 223

Query: 167 LDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLRRRTSISLLS 226
           +D  +R+WWWG   +  GWFP++FVRLRV+Q++  +D      + G++      + +  S
Sbjct: 224 MDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDDAPLAGNSGAED---GGAEAQSS 280

Query: 227 NDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQ 286
            DQ+R+ V+ E+++TERD++K L D+ EGY+ +CR+R DMFS EQ++TIFGN+EDI   Q
Sbjct: 281 KDQMRTNVINEILSTERDYIKHLRDICEGYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQ 340

Query: 287 SSFLEDLETKLDWDAPYKSCIGETFLKHKSGF---------HPHLGVTVRHAIKIHCSDK 337
            +F++ LE + + + P+ S +G  FL+H++ F         HP+  V +    K+    K
Sbjct: 341 KAFVKALEQRFNRERPHLSELGACFLEHQADFQIYSEYCNNHPNACVELSRLTKL---SK 397

Query: 338 DKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAK--ELARMSAARCHSSRP 395
             +    CR L+              +++    DG    P  K  +     A     + P
Sbjct: 398 YVYFFEACRLLQ-------------KMIDISL-DGFLLTPVQKICKYPLQLAELLKYTHP 443

Query: 396 PTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLI 455
              H D+  +  AL AM++VA LINERKRR+E+++K+A WQ  +E WEGEDL+  SS+LI
Sbjct: 444 --QHRDFKDVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELI 501

Query: 456 HQGEVIRVTSGMW-TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514
           + GE+ RVT     +     FLFDHQL+YCK+D+L+R+   YK RL++D  ++++L DGK
Sbjct: 502 YSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGK 561

Query: 515 GR 516
            R
Sbjct: 562 DR 563

Acts as guanine nucleotide exchange factor (GEF) for RHOA, RAC1 and CDC42 GTPases. Binding of APC may activate RAC1 GEF activity. The APC-ARHGEF4 complex seems to be involved in cell migration as well as in E-cadherin-mediated cell-cell adhesion. Required for MMP9 up-regulation via the JNK signaling pathway in colorectal tumor cells. Involved in tumor angiogenesis and may play a role in intestinal adenoma formation and tumor progression.
Homo sapiens (taxid: 9606)

>sp|Q5DU57|SPT13_MOUSE Spermatogenesis-associated protein 13 OS=Mus musculus GN=Spata13 PE=2 SV=2

 Score =  291 bits (746), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 154/393 (39%), Positives = 233/393 (59%), Gaps = 38/393 (9%)

Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
           VV AEA+WDHV M+ +ELGF+AGDVI+VL+  ++DWWWG   +   WFP++FVRLRV+QE
Sbjct: 153 VVCAEALWDHVTMDDQELGFKAGDVIQVLEASNKDWWWGRNEDKEAWFPASFVRLRVNQE 212

Query: 199 DTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLA 258
           +  E+C ++      +   +       S  Q+R+ V++E++NTER ++K L D+ EGY+ 
Sbjct: 213 ELPENCSSSHGEEQDEDTSKARHKHPESQQQMRTNVIQEIMNTERVYIKHLKDICEGYIR 272

Query: 259 ECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGF 318
           +CR+   MF+  Q+ TIFGN+EDI  FQ  FL+DLE + + + P+ S IG  FL+H+ GF
Sbjct: 273 QCRKHTGMFTVAQLATIFGNIEDIYKFQRKFLKDLEKQYNKEEPHLSEIGSCFLEHQEGF 332

Query: 319 ---------HPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDR 369
                    HP   V + + +K     K +     CR L+           + AL     
Sbjct: 333 AIYSEYCNNHPGACVELSNLMK---HSKYRHFFEACRLLQQMI--------DIAL----- 376

Query: 370 EDGLEFAPAAK------ELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERK 423
            DG    P  K      +LA +            +H DY  I  A EAM++VA LINERK
Sbjct: 377 -DGFLLTPVQKICKYPLQLAELLKYTTQ------EHGDYNNIKAAYEAMKNVACLINERK 429

Query: 424 RRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVY 483
           R++ES++K+A WQ  + GWEG D+++ SS+LIH GE+ ++T    +     FLFDHQLV 
Sbjct: 430 RKLESIDKIARWQVSIVGWEGLDILDRSSELIHSGELTKITRQGKSQQRIFFLFDHQLVS 489

Query: 484 CKRDILKRNTHVYKARLNIDTSQIINLPDGKGR 516
           CK+D+L+R+   YK R+++D  +++++ DG+ +
Sbjct: 490 CKKDLLRRDMLYYKGRMDMDEVELVDVEDGRDK 522

Acts as guanine nucleotide exchange factor (GEF) for RHOA, RAC1 and CDC42 GTPases. Regulates cell migration and adhesion assembly and disassembly through a RAC1, PI3K, RHOA and AKT1-dependent mechanism. Increases both RAC1 and CDC42 activity, but decreases the amount of active RHOA (By similarity). Required for MMP9 up-regulation via the JNK signaling pathway in colorectal tumor cells. Involved in tumor angiogenesis and may play a role in intestinal adenoma formation and tumor progression.

Mus musculus (taxid: 10090)

>sp|Q96N96|SPT13_HUMAN Spermatogenesis-associated protein 13 OS=Homo sapiens GN=SPATA13 PE=1 SV=1

 Score =  286 bits (731), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 151/393 (38%), Positives = 230/393 (58%), Gaps = 38/393 (9%)

Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
           VV AEA+WDHV M+ +ELGF+AGDVI+VL+  ++DWWWG   +   WFP++FVRLRV+QE
Sbjct: 149 VVCAEALWDHVTMDDQELGFKAGDVIQVLEASNKDWWWGRSEDKEAWFPASFVRLRVNQE 208

Query: 199 DTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLA 258
           +  E+  +  +    +   +       +  Q+R+ V+RE+++TER ++K L D+ EGY+ 
Sbjct: 209 ELSENSSSTPSEEQDEEASQSRHRHCENKQQMRTNVIREIMDTERVYIKHLRDICEGYIR 268

Query: 259 ECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGF 318
           +CR+   MF+  Q+ TIFGN+EDI  FQ  FL+DLE + + + P+ S IG  FL+++ GF
Sbjct: 269 QCRKHTGMFTVAQLATIFGNIEDIYKFQRKFLKDLEKQYNKEEPHLSEIGSCFLQNQEGF 328

Query: 319 ---------HPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDR 369
                    HP   + + + +K     K +     CR L+                    
Sbjct: 329 AIYSEYCNNHPGACLELANLMK---QGKYRHFFEACRLLQQMIDIAI------------- 372

Query: 370 EDGLEFAPAAK------ELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERK 423
            DG    P  K      +LA +            +H DY  I  A EAM++VA LINERK
Sbjct: 373 -DGFLLTPVQKICKYPLQLAELLKYTTQ------EHGDYSNIKAAYEAMKNVACLINERK 425

Query: 424 RRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVY 483
           R++ES++K+A WQ  + GWEG D+++ SS+LIH GE+ ++T    +   T FLFDHQLV 
Sbjct: 426 RKLESIDKIARWQVSIVGWEGLDILDRSSELIHSGELTKITKQGKSQQRTFFLFDHQLVS 485

Query: 484 CKRDILKRNTHVYKARLNIDTSQIINLPDGKGR 516
           CK+D+L+R+   YK RL++D  ++++L DG+ +
Sbjct: 486 CKKDLLRRDMLYYKGRLDMDEMELVDLGDGRDK 518

Acts as guanine nucleotide exchange factor (GEF) for RHOA, RAC1 and CDC42 GTPases. Regulates cell migration and adhesion assembly and disassembly through a RAC1, PI3K, RHOA and AKT1-dependent mechanism. Increases both RAC1 and CDC42 activity, but decreases the amount of active RHOA. Required for MMP9 up-regulation via the JNK signaling pathway in colorectal tumor cells. Involved in tumor angiogenesis and may play a role in intestinal adenoma formation and tumor progression.

Homo sapiens (taxid: 9606)

>sp|Q3UTH8|ARHG9_MOUSE Rho guanine nucleotide exchange factor 9 OS=Mus musculus GN=Arhgef9 PE=2 SV=1

 Score =  279 bits (714), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 156/393 (39%), Positives = 235/393 (59%), Gaps = 35/393 (8%)

Query: 137 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 196
           D +V AEAVWDHV M   EL F+AGDVI+VLD  ++DWWWG   +  GWFP++FVRL V+
Sbjct: 8   DSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVN 67

Query: 197 QEDTVEDCLAALASGGSKTLRRRTSIS--LLSNDQVRSRVVRELINTERDFVKVLHDVSE 254
           QED VE+  + + +G          +   L + DQ+R+ V+ E+++TER ++K L D+ E
Sbjct: 68  QEDGVEEGPSDVQNGHLDPNSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLKDICE 127

Query: 255 GYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKH 314
           GYL +CR+R DMFS EQ++ IFGN+EDI  FQ  F+ DLE + + D P+ S IG  FL+H
Sbjct: 128 GYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHLSEIGPCFLEH 187

Query: 315 KSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDRE---D 371
           + GF  +           +C++     +   + ++D +R+   F+  R L++Q  +   D
Sbjct: 188 QDGFWIY---------SEYCNNHLDACMELSKLMKD-SRYQHFFEACR-LLQQMIDIAID 236

Query: 372 GLEFAPAAK---------ELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINER 422
           G    P  K         EL + +A          DH DY  +  AL  MR+V   INER
Sbjct: 237 GFLLTPVQKICKYPLQLAELLKYTA---------QDHSDYRYVAAALAVMRNVTQQINER 287

Query: 423 KRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTI-TLFLFDHQL 481
           KRR+E+++K+A WQ  V  WEGED+++ SS+LI+ GE+  +      N     FLFDHQ+
Sbjct: 288 KRRLENIDKIAQWQASVLDWEGEDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQM 347

Query: 482 VYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514
           V CK+D+++R+   YK R+++D  ++I++ DG+
Sbjct: 348 VLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGR 380

Acts as guanine nucleotide exchange factor (GEF) for CDC42. Promotes formation of GPHN clusters.

Mus musculus (taxid: 10090)

>sp|Q58DL7|ARHG9_BOVIN Rho guanine nucleotide exchange factor 9 OS=Bos taurus GN=ARHGEF9 PE=2 SV=1

 Score =  278 bits (712), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 155/393 (39%), Positives = 235/393 (59%), Gaps = 35/393 (8%)

Query: 137 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 196
           D +V AEAVWDHV M   EL F+AGDVI+VLD  ++DWWWG   +  GWFP++FVRL V+
Sbjct: 53  DSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVN 112

Query: 197 QEDTVEDCLAALASGGSKTLRRRTSIS--LLSNDQVRSRVVRELINTERDFVKVLHDVSE 254
           QED VE+  + + +G          +   L + DQ+R+ V+ E+++TER ++K L D+ E
Sbjct: 113 QEDGVEEGPSDVQNGHLDPNSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLKDICE 172

Query: 255 GYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKH 314
           GYL +CR+R DMFS EQ++ IFGN+EDI  FQ  F+ DLE + + D P+ S IG  FL+H
Sbjct: 173 GYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHLSEIGPCFLEH 232

Query: 315 KSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDRE---D 371
           + GF  +           +C++     +   + ++D +R+   F+  R L++Q  +   D
Sbjct: 233 QDGFWIY---------SEYCNNHLDACMELSKLMKD-SRYQHFFEACR-LLQQMIDIAID 281

Query: 372 GLEFAPAAK---------ELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINER 422
           G    P  K         EL + +A          DH DY  +  AL  MR+V   INER
Sbjct: 282 GFLLTPVQKICKYPLQLAELLKYTA---------QDHSDYRYVAAALAVMRNVTQQINER 332

Query: 423 KRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTI-TLFLFDHQL 481
           KRR+E+++K+A WQ  V  WEGED+++ SS+LI+ GE+  +      N     FLFDHQ+
Sbjct: 333 KRRLENIDKIAQWQASVLDWEGEDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQM 392

Query: 482 VYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514
           V CK+D+++R+   YK R+++D  +++++ DG+
Sbjct: 393 VLCKKDLIRRDILYYKGRIDMDKYEVVDIEDGR 425

Acts as guanine nucleotide exchange factor (GEF) for CDC42. Promotes formation of GPHN clusters.

Bos taurus (taxid: 9913)

>sp|O43307|ARHG9_HUMAN Rho guanine nucleotide exchange factor 9 OS=Homo sapiens GN=ARHGEF9 PE=1 SV=3

 Score =  278 bits (712), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 155/393 (39%), Positives = 235/393 (59%), Gaps = 35/393 (8%)

Query: 137 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 196
           D +V AEAVWDHV M   EL F+AGDVI+VLD  ++DWWWG   +  GWFP++FVRL V+
Sbjct: 8   DSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVN 67

Query: 197 QEDTVEDCLAALASGGSKTLRRRTSIS--LLSNDQVRSRVVRELINTERDFVKVLHDVSE 254
           QED VE+  + + +G          +   L + DQ+R+ V+ E+++TER ++K L D+ E
Sbjct: 68  QEDEVEEGPSDVQNGHLDPNSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLKDICE 127

Query: 255 GYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKH 314
           GYL +CR+R DMFS EQ++ IFGN+EDI  FQ  F+ DLE + + D P+ S IG  FL+H
Sbjct: 128 GYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHLSEIGPCFLEH 187

Query: 315 KSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDRE---D 371
           + GF  +           +C++     +   + ++D +R+   F+  R L++Q  +   D
Sbjct: 188 QDGFWIY---------SEYCNNHLDACMELSKLMKD-SRYQHFFEACR-LLQQMIDIAID 236

Query: 372 GLEFAPAAK---------ELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINER 422
           G    P  K         EL + +A          DH DY  +  AL  MR+V   INER
Sbjct: 237 GFLLTPVQKICKYPLQLAELLKYTA---------QDHSDYRYVAAALAVMRNVTQQINER 287

Query: 423 KRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTI-TLFLFDHQL 481
           KRR+E+++K+A WQ  V  WEGED+++ SS+LI+ GE+  +      N     FLFDHQ+
Sbjct: 288 KRRLENIDKIAQWQASVLDWEGEDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQM 347

Query: 482 VYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514
           V CK+D+++R+   YK R+++D  +++++ DG+
Sbjct: 348 VLCKKDLIRRDILYYKGRIDMDKYEVVDIEDGR 380

Acts as guanine nucleotide exchange factor (GEF) for CDC42. Promotes formation of GPHN clusters.

Homo sapiens (taxid: 9606)

>sp|Q7TNR9|ARHG4_MOUSE Rho guanine nucleotide exchange factor 4 OS=Mus musculus GN=Arhgef4 PE=2 SV=2

 Score =  277 bits (708), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 150/378 (39%), Positives = 227/378 (60%), Gaps = 33/378 (8%)

Query: 151 MEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALAS 210
           M+ +ELGF+AGDVIEV+D  +R+WWWG   +  GWFP++FVRLRV+Q++  +D  A  A 
Sbjct: 1   MDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDYEAPRA- 59

Query: 211 GGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPE 270
            G++        +    DQ+R+ V+ E+++TERD++K L D+ EGY+ +CR+R DMFS E
Sbjct: 60  -GAREADDSGPEAQSCKDQMRTNVINEILSTERDYIKHLRDICEGYVRQCRKREDMFSEE 118

Query: 271 QIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGF---------HPH 321
           Q++TIFGN+EDI   Q +F++ LE K + + P+ S +G  FL+H++ F         HP+
Sbjct: 119 QLRTIFGNIEDIYRCQKAFVKALEQKFNTERPHLSELGACFLEHQADFQIYSEYCNNHPN 178

Query: 322 LGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAK- 380
             V +    K+    K  +    CR L+              +++    DG    P  K 
Sbjct: 179 ACVELSRLTKL---SKYVYFFEACRLLQ-------------RMIDISL-DGFLLTPVQKI 221

Query: 381 -ELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRV 439
            +     A     + P   H D+  +  AL AM++VA LINERKRR+E+++K+A WQ  +
Sbjct: 222 CKYPLQLAELLKYTHP--QHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSI 279

Query: 440 EGWEGEDLIETSSQLIHQGEVIRVTSGMW-TNTITLFLFDHQLVYCKRDILKRNTHVYKA 498
           E WEGEDL+  SS+LIH GE+ RVT     +     FLFD QL+YCK+D+L+R+   YK 
Sbjct: 280 EDWEGEDLLVRSSELIHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKG 339

Query: 499 RLNIDTSQIINLPDGKGR 516
           RL++D  +++++ DGK R
Sbjct: 340 RLDMDDLEVVDVEDGKDR 357

Acts as guanine nucleotide exchange factor (GEF) for RHOA, RAC1 and CDC42 GTPases. Binding of APC may activate RAC1 GEF activity. The APC-ARHGEF4 complex seems to be involved in cell migration as well as in E-cadherin-mediated cell-cell adhesion (By similarity). Required for MMP9 up-regulation via the JNK signaling pathway in colorectal tumor cells. Involved in tumor angiogenesis and may play a role in intestinal adenoma formation and tumor progression.

Mus musculus (taxid: 10090)

>sp|Q5RDK0|ARHG9_PONAB Rho guanine nucleotide exchange factor 9 OS=Pongo abelii GN=ARHGEF9 PE=2 SV=1

 Score =  277 bits (708), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 156/393 (39%), Positives = 230/393 (58%), Gaps = 35/393 (8%)

Query: 137 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 196
           D +V AEAVWDH  M   EL F+AGDVI+VLD  ++DWWWG   +  GWFP++FVRL V+
Sbjct: 8   DSIVSAEAVWDHATMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVN 67

Query: 197 QEDTVEDCLAALASGGSKTLRRRTSIS--LLSNDQVRSRVVRELINTERDFVKVLHDVSE 254
           QED VE+  + + +G          +   L + DQ+R+ V+ E+++TER ++K L D+ E
Sbjct: 68  QEDEVEEGPSDVQNGHLDPNSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLKDICE 127

Query: 255 GYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKH 314
           GYL +CR+R DMFS EQ++ IFGN+EDI  FQ  F+ DLE + + D P+ S IG  FL+H
Sbjct: 128 GYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHLSEIGPCFLEH 187

Query: 315 KSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDRE---D 371
           + GF  +      H     C +  K        L   +R+   F+  R L++Q  +   D
Sbjct: 188 QDGFWIYSEYCNNHLDA--CMELSK--------LMKDSRYQHFFEACR-LLQQMIDIAID 236

Query: 372 GLEFAPAAK---------ELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINER 422
           G    P  K         EL + +A          DH DY  +  AL  MR+V   INER
Sbjct: 237 GFLLTPVQKICKYPLQLAELLKYTA---------QDHSDYRYVAAALAVMRNVTQQINER 287

Query: 423 KRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTI-TLFLFDHQL 481
           KRR+E+++K+A WQ  V  WEGED+++ SS+LI+ GE+  +      N     FLFDHQ+
Sbjct: 288 KRRLENIDKIAQWQASVLDWEGEDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQM 347

Query: 482 VYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514
           V CK+D+++R+   YK R+++D  +++++ DG+
Sbjct: 348 VLCKKDLIRRDILYYKGRIDMDKYEVVDIEDGR 380

Acts as guanine nucleotide exchange factor (GEF) for CDC42. Promotes formation of GPHN clusters.

Pongo abelii (taxid: 9601)

>sp|Q9QX73|ARHG9_RAT Rho guanine nucleotide exchange factor 9 OS=Rattus norvegicus GN=Arhgef9 PE=1 SV=1

 Score =  274 bits (700), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 153/393 (38%), Positives = 234/393 (59%), Gaps = 35/393 (8%)

Query: 137 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 196
           D +V AEAVWDHV M    + F+AGDVI+VLD  ++DWWWG   +  GWFP++FVRL V+
Sbjct: 15  DSIVSAEAVWDHVTMANRGVAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVN 74

Query: 197 QEDTVEDCLAALASGGSKTLRRRTSIS--LLSNDQVRSRVVRELINTERDFVKVLHDVSE 254
           QED VE+  + + +G          +   L + DQ+R+ V+ E+++TER ++K L D+ E
Sbjct: 75  QEDGVEEGPSDVQNGHLDPNSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLKDICE 134

Query: 255 GYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKH 314
           GYL +CR+R DMFS EQ++ IFGN+EDI  FQ  F+ DLE + + D P+ S IG  FL+H
Sbjct: 135 GYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHLSEIGPCFLEH 194

Query: 315 KSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDRE---D 371
           + GF  +           +C++     +   + ++D +R+   F+  R L++Q  +   D
Sbjct: 195 QDGFWIY---------SEYCNNHLDACMELSKLMKD-SRYQHFFEACR-LLQQMIDIAID 243

Query: 372 GLEFAPAAK---------ELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINER 422
           G    P  K         EL + +A          DH DY  +  AL  MR+V   INER
Sbjct: 244 GFLLTPVQKICKYPLQLAELLKYTA---------QDHSDYRYVAAALAVMRNVTQQINER 294

Query: 423 KRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTI-TLFLFDHQL 481
           KRR+E+++K+A WQ  V  WEG+D+++ SS+LI+ GE+  +      N     FLFDHQ+
Sbjct: 295 KRRLENIDKIAQWQASVLDWEGDDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQM 354

Query: 482 VYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514
           V CK+D+++R+   YK R+++D  ++I++ DG+
Sbjct: 355 VLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGR 387

Acts as guanine nucleotide exchange factor (GEF) for CDC42. Promotes formation of GPHN clusters.

Rattus norvegicus (taxid: 10116)

>sp|Q69ZK0|PREX1_MOUSE Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein OS=Mus musculus GN=Prex1 PE=1 SV=2

 Score =  123 bits (308), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/314 (28%), Positives = 147/314 (46%), Gaps = 38/314 (12%)

Query: 226 SNDQVRSR--VVRELINTERDFVKVLHDVSEGYLAECRRR-----NDMFSPEQIQTIFGN 278
           S  Q+R R  V+ E++ TERD+V  L  +   +L   R+          + E ++ +F N
Sbjct: 38  SERQLRLRLCVLNEILGTERDYVGTLRFLQSAFLQRIRQNVADSVEKGLTEENVKVLFSN 97

Query: 279 LEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKD 338
           +EDIL     FL  LE  L  +   +  +G  FLK K  F  +         + +CS+ +
Sbjct: 98  IEDILEVHKDFLAALEYCLHPEPQSQHELGNVFLKFKDKFCVY---------EEYCSNHE 148

Query: 339 KWLLFCCRSLEDKARWLAAFQQERALVEQDRE-----DGLEFAPAAKELARMSAARCHSS 393
           K L        +K   + AF     L+   +      +G   +P  +        +  + 
Sbjct: 149 KALRLLVEL--NKVPAVRAFLLSCMLLGGRKTTDIPLEGYLLSPIQRICKYPLLLKELAK 206

Query: 394 RPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQ 453
           R P  HPD+  +  AL+AM+ V   INE KR+ME LE L   Q  +EGWEG +L +  ++
Sbjct: 207 RTPGKHPDHTAVQSALQAMKTVCSNINETKRQMEKLEALEQLQSHIEGWEGSNLTDICTE 266

Query: 454 LIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKR--------------DILKRNTHVYKAR 499
           L+ QG ++++++G        FLFD+ LVYCKR                +  + ++++ R
Sbjct: 267 LLLQGNLLKISAGNIQER-AFFLFDNLLVYCKRKSRVTGSKKSTKRTKSINGSLYIFRGR 325

Query: 500 LNIDTSQIINLPDG 513
           +N +  ++ N+ DG
Sbjct: 326 INTEVMEVENVEDG 339

Functions as a RAC guanine nucleotide exchange factor (GEF), which activates the Rac proteins by exchanging bound GDP for free GTP. Its activity is synergistically activated by phosphatidylinositol 3,4,5-trisphosphate and the beta gamma subunits of heterotrimeric G protein. May function downstream of heterotrimeric G proteins in neutrophils.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	518
328781953	923	PREDICTED: hypothetical protein LOC40910	0.791	0.444	0.608	1e-151
350416600	1027	PREDICTED: spermatogenesis-associated pr	0.787	0.397	0.613	1e-150
380019842	1135	PREDICTED: uncharacterized protein LOC10	0.781	0.356	0.605	1e-150
340722378	1027	PREDICTED: spermatogenesis-associated pr	0.787	0.397	0.611	1e-150
322796610	795	hypothetical protein SINV_80505 [Solenop	0.791	0.515	0.608	1e-150
332019008	945	Spermatogenesis-associated protein 13 [A	0.791	0.433	0.608	1e-149
383849116	1021	PREDICTED: spermatogenesis-associated pr	0.781	0.396	0.603	1e-148
307179210	1146	Spermatogenesis-associated protein 13 [C	0.791	0.357	0.605	1e-148
307193179	750	Spermatogenesis-associated protein 13 [H	0.793	0.548	0.602	1e-146
270015460	956	hypothetical protein TcasGA2_TC004065 [T	0.812	0.440	0.598	1e-139

>gi|328781953|ref|XP_392633.4| PREDICTED: hypothetical protein LOC409108 isoform 1 [Apis mellifera]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 288/473 (60%), Positives = 345/473 (72%), Gaps = 63/473 (13%)

Query: 81  LRRSVSQPLGINELSPLLRRKPIGTR-PG---------DGTNSLCCSDDELLSDSESSVT 130
           LRRS+SQPLGIN+LSPL+R K  G R PG         DG      SDDE++SDSESS+ 
Sbjct: 452 LRRSLSQPLGINQLSPLMRTKTAGARLPGGNVLSEDEQDGRGG--TSDDEMMSDSESSIA 509

Query: 131 SLG---------MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RG 180
           SL          MDE+ V+LAEAVWDHVAME EEL FRAGDVIEVLD LD+DWWWG+ RG
Sbjct: 510 SLTDRKKSFEQTMDEEVVILAEAVWDHVAMEPEELAFRAGDVIEVLDNLDKDWWWGSCRG 569

Query: 181 EASGWFPSAFVRLRVSQEDTVEDCLAALASGGS--KTLRRRTSISLLSNDQVRSRVVREL 238
           E  GWFP+AFVRLRVSQEDTVEDCLAA+ASGG+  + LRRRTS+SLLSN+QVR+ VVREL
Sbjct: 570 E-HGWFPAAFVRLRVSQEDTVEDCLAAMASGGTSNQQLRRRTSVSLLSNEQVRTSVVREL 628

Query: 239 INTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLD 298
           + TERDFVK+L DV+EGY+AECRRR DMF+ EQI+TIF NLE++L FQS FL+DLET++D
Sbjct: 629 VQTERDFVKILRDVAEGYIAECRRRTDMFTEEQIETIFINLEELLDFQSEFLKDLETRID 688

Query: 299 WDAPYKSCIGETFLKHKSGF---------HPHLGVTVRHAIKIHCSDKDKWLLFCCRSLE 349
           W APYKSC+GE FL H++GF         HP    T++   +++  ++       CR + 
Sbjct: 689 WSAPYKSCVGECFLNHRAGFRMYSEYCNSHPMATATLQ---ELYQHNRYSKFFEACRLM- 744

Query: 350 DKARWLAAFQQERALVEQDREDGLEFAPAAK------ELARMSAARCHSSRPPTDHPDYV 403
                       R L+E    DG    P  +      +LA +           +DHPDY 
Sbjct: 745 ------------RGLIEIPL-DGYLLTPVQRICKYPLQLAELLKY------TKSDHPDYH 785

Query: 404 KITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRV 463
           KI EALEAMRDVA+LINERKRRMESLEKLAAWQ RVEGWEGEDLIE SSQLI+QGE +RV
Sbjct: 786 KIQEALEAMRDVAVLINERKRRMESLEKLAAWQLRVEGWEGEDLIEVSSQLIYQGEAVRV 845

Query: 464 TSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKGR 516
           T+GMWTN ITLFLFDHQLVYCK+DILKRNT+VYK R+ +DTS++I++PDGKG+
Sbjct: 846 TTGMWTNNITLFLFDHQLVYCKKDILKRNTYVYKGRIYLDTSEVIDVPDGKGK 898

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416600|ref|XP_003491011.1| PREDICTED: spermatogenesis-associated protein 13-like [Bombus impatiens]

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 289/471 (61%), Positives = 342/471 (72%), Gaps = 63/471 (13%)

Query: 81  LRRSVSQPLGINELSPLLRRKPIGTR-PG---------DGTNSLCCSDDELLSDSESSVT 130
           LRRS+SQPLGIN+LSPL+R K  G R PG         DG      SDDE++SDSESS+ 
Sbjct: 456 LRRSLSQPLGINQLSPLMRTKTAGARLPGGNVLSEDEQDGRGG--TSDDEMMSDSESSIA 513

Query: 131 SLG---------MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RG 180
           SL          MDE+ V+LAEAVWDHVAME EEL FRAGDVIEVLD LD+DWWWG+ RG
Sbjct: 514 SLTDRKKSFEQTMDEEVVILAEAVWDHVAMEPEELAFRAGDVIEVLDNLDKDWWWGSCRG 573

Query: 181 EASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKT--LRRRTSISLLSNDQVRSRVVREL 238
           E  GWFP+AFVRLRVSQEDTVEDCLAA+ASGG+    LRRRTSISLLSN+QVR+ VVREL
Sbjct: 574 E-HGWFPAAFVRLRVSQEDTVEDCLAAMASGGASNSQLRRRTSISLLSNEQVRTSVVREL 632

Query: 239 INTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLD 298
           + TERDFVK+L DV+EGY+AECRRR DMF+ EQI+TIF NLE++L FQS FL+DLET++D
Sbjct: 633 VQTERDFVKILRDVAEGYIAECRRRTDMFTDEQIETIFINLEELLDFQSEFLKDLETRID 692

Query: 299 WDAPYKSCIGETFLKHKSGF---------HPHLGVTVRHAIKIHCSDKDKWLLFCCRSLE 349
           W APYKSC+GE FL H++GF         HP    T++   +++  ++       CR + 
Sbjct: 693 WSAPYKSCVGECFLNHRAGFRMYSEYCNSHPMATATLQ---ELYQHNRYSKFFEACRLM- 748

Query: 350 DKARWLAAFQQERALVEQDREDGLEFAPAAK------ELARMSAARCHSSRPPTDHPDYV 403
                       R L+E    DG    P  +      +LA +           TDHPDY 
Sbjct: 749 ------------RGLIEIPL-DGYLLTPVQRICKYPLQLAELLKY------TKTDHPDYH 789

Query: 404 KITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRV 463
           KI EALEAMRDVA+LINERKRRMESLEKLAAWQ RVEGWEGEDLIE SSQLI+QGE +RV
Sbjct: 790 KIQEALEAMRDVAVLINERKRRMESLEKLAAWQLRVEGWEGEDLIEVSSQLIYQGEAVRV 849

Query: 464 TSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514
           T+GMWTN ITLFLFDHQLVYCK+DILKRNT+VYK R+ +DTS++I++PDGK
Sbjct: 850 TTGMWTNNITLFLFDHQLVYCKKDILKRNTYVYKGRIYLDTSEVIDVPDGK 900

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019842|ref|XP_003693810.1| PREDICTED: uncharacterized protein LOC100863896 [Apis florea]

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 287/474 (60%), Positives = 343/474 (72%), Gaps = 69/474 (14%)

Query: 81   LRRSVSQPLGINELSPLLRRKPIGTR-PG---------DGTNSLCCSDDELLSDSESSVT 130
            LRRS+SQPLGIN+LSPL+R K  G R PG         DG      SDDE++SDSESS+ 
Sbjct: 564  LRRSLSQPLGINQLSPLMRTKTAGARLPGGNVLSEDEQDGRGG--TSDDEMMSDSESSIA 621

Query: 131  SLG---------MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RG 180
            SL          MDE+ V+LAEAVWDHVAME EEL FRAGDVIEVLD LD+DWWWG+ RG
Sbjct: 622  SLTDRKKSFEQTMDEEVVILAEAVWDHVAMEPEELAFRAGDVIEVLDNLDKDWWWGSCRG 681

Query: 181  EASGWFPSAFVRLRVSQEDTVEDCLAALASGGS--KTLRRRTSISLLSNDQVRSRVVREL 238
            E  GWFP+AFVRLRVSQEDTVEDCLAA+ASGG+  + LRRRTS+SLLSN+QVR+ VVREL
Sbjct: 682  E-HGWFPAAFVRLRVSQEDTVEDCLAAMASGGTSNQQLRRRTSVSLLSNEQVRTSVVREL 740

Query: 239  INTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLD 298
            + TERDFVK+L DV+EGY+AECRRR DMF+ EQI+TIF NLE++L FQS FL+DLET++D
Sbjct: 741  VQTERDFVKILRDVAEGYIAECRRRTDMFTEEQIETIFINLEELLDFQSEFLKDLETRID 800

Query: 299  WDAPYKSCIGETFLKHKSGF---------HPHLGVTVRHAIKIHCSDKDKWLLFCCRSLE 349
            W APYKSC+GE FL H++GF         HP    T++   +++  ++       CR + 
Sbjct: 801  WSAPYKSCVGECFLNHRAGFRMYSEYCNSHPMATATLQ---ELYQHNRYSKFFEACRLM- 856

Query: 350  DKARWLAAFQQERALVEQDREDGLEFAPAAK---------ELARMSAARCHSSRPPTDHP 400
                        R L+E    DG    P  +         EL + +          +DHP
Sbjct: 857  ------------RGLIEIPL-DGYLLTPVQRICKYPLQLAELLKYTK---------SDHP 894

Query: 401  DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEV 460
            DY KI EALEAMRDVA+LINERKRRMESLEKLAAWQ RVEGWEGEDLIE SSQLI+QGE 
Sbjct: 895  DYHKIQEALEAMRDVAVLINERKRRMESLEKLAAWQLRVEGWEGEDLIEVSSQLIYQGEA 954

Query: 461  IRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514
            +RVT+GMWTN ITLFLFDHQLVYCK+DILKRNT+VYK R+ +DTS++I++PDGK
Sbjct: 955  VRVTTGMWTNNITLFLFDHQLVYCKKDILKRNTYVYKGRIYLDTSEVIDVPDGK 1008

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722378|ref|XP_003399583.1| PREDICTED: spermatogenesis-associated protein 13-like [Bombus terrestris]

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 288/471 (61%), Positives = 342/471 (72%), Gaps = 63/471 (13%)

Query: 81  LRRSVSQPLGINELSPLLRRKPIGTR-PG---------DGTNSLCCSDDELLSDSESSVT 130
           LRRS+SQPLGIN+LSPL+R K  G R PG         DG      SDDE++SDSESS+ 
Sbjct: 456 LRRSLSQPLGINQLSPLMRTKTAGARLPGGNVLSEDEQDGRGG--TSDDEMMSDSESSIA 513

Query: 131 SLG---------MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RG 180
           SL          MDE+ V+LAEAVWDHVAME EEL FRAGDVIEVLD LD+DWWWG+ RG
Sbjct: 514 SLTDRKKSFEQTMDEEVVILAEAVWDHVAMEPEELAFRAGDVIEVLDNLDKDWWWGSCRG 573

Query: 181 EASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKT--LRRRTSISLLSNDQVRSRVVREL 238
           E  GWFP+AFVRLRVSQEDTVEDCLAA+ASGG+    LRRRTS+SLLSN+QVR+ VVREL
Sbjct: 574 E-HGWFPAAFVRLRVSQEDTVEDCLAAMASGGASNSQLRRRTSVSLLSNEQVRTSVVREL 632

Query: 239 INTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLD 298
           + TERDFVK+L DV+EGY+AECRRR DMF+ EQI+TIF NLE++L FQS FL+DLET++D
Sbjct: 633 VQTERDFVKILRDVAEGYIAECRRRTDMFTDEQIETIFINLEELLDFQSEFLKDLETRID 692

Query: 299 WDAPYKSCIGETFLKHKSGF---------HPHLGVTVRHAIKIHCSDKDKWLLFCCRSLE 349
           W APYKSC+GE FL H++GF         HP    T++   +++  ++       CR + 
Sbjct: 693 WSAPYKSCVGECFLNHRAGFRMYSEYCNSHPMATATLQ---ELYQHNRYSKFFEACRLM- 748

Query: 350 DKARWLAAFQQERALVEQDREDGLEFAPAAK------ELARMSAARCHSSRPPTDHPDYV 403
                       R L+E    DG    P  +      +LA +           TDHPDY 
Sbjct: 749 ------------RGLIEIPL-DGYLLTPVQRICKYPLQLAELLKY------TKTDHPDYH 789

Query: 404 KITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRV 463
           KI EALEAMRDVA+LINERKRRMESLEKLAAWQ RVEGWEGEDLIE SSQLI+QGE +RV
Sbjct: 790 KIQEALEAMRDVAVLINERKRRMESLEKLAAWQLRVEGWEGEDLIEVSSQLIYQGEAVRV 849

Query: 464 TSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514
           T+GMWTN ITLFLFDHQLVYCK+DILKRNT+VYK R+ +DTS++I++PDGK
Sbjct: 850 TTGMWTNNITLFLFDHQLVYCKKDILKRNTYVYKGRIYLDTSEVIDVPDGK 900

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796610|gb|EFZ19084.1| hypothetical protein SINV_80505 [Solenopsis invicta]

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 287/472 (60%), Positives = 344/472 (72%), Gaps = 62/472 (13%)

Query: 81  LRRSVSQPLGINELSPLLRRKPIGTR-PG---------DGTNSLCCSDDELLSDSESSVT 130
           LRRS+SQPLGIN+LSPL+R K  G R PG         DG  +    DDE++SDSESS+ 
Sbjct: 335 LRRSLSQPLGINQLSPLMRAKAAGARLPGGNVLSEDEQDG-RAGTSEDDEMMSDSESSIA 393

Query: 131 SLG---------MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RG 180
           SL          MDE+ V+LAEAVWDHVAME EEL FRAGDVI+V DTLDRDWWWG+ RG
Sbjct: 394 SLTDKKKSFEQTMDEEIVMLAEAVWDHVAMEPEELAFRAGDVIDVFDTLDRDWWWGSCRG 453

Query: 181 EASGWFPSAFVRLRVSQEDTVEDCLAALASGGSK--TLRRRTSISLLSNDQVRSRVVREL 238
           E  GWFP+AFVRLRVSQEDTVEDCLAA+ASGGS    LR+RTS+SLLSN+QVR+ VVREL
Sbjct: 454 E-HGWFPAAFVRLRVSQEDTVEDCLAAMASGGSSGTQLRKRTSVSLLSNEQVRASVVREL 512

Query: 239 INTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLD 298
           ++TERDFVK+L DV+EGY+AECRRR DMF+ EQI+TIF NLED+L FQS FL+DLE ++D
Sbjct: 513 VHTERDFVKILRDVAEGYIAECRRRTDMFTEEQIETIFINLEDLLDFQSEFLKDLEDRID 572

Query: 299 WDAPYKSCIGETFLKHKSGF---------HPHLGVTVRHAIKIHCSDKDKWLLFCCRSLE 349
           W+APYKSC+GE FL H++GF         HP    T++   +++  ++       CR + 
Sbjct: 573 WNAPYKSCVGECFLTHRAGFRMYSEYCNSHPMATATLQ---ELYQHNRYSKFFEACRLM- 628

Query: 350 DKARWLAAFQQERALVEQDREDGLEFAPAAK------ELARMSAARCHSSRPPTDHPDYV 403
                       R L+E    DG    P  +      +LA +           TDHPDY 
Sbjct: 629 ------------RGLIEIPL-DGYLLTPIQRICKYPLQLAELLKY------TKTDHPDYH 669

Query: 404 KITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRV 463
           KI EALEAMRDVA+LINERKRRMESLEKLA+WQ RVEGWEGEDLIE SSQLI+QGEV+RV
Sbjct: 670 KIQEALEAMRDVAVLINERKRRMESLEKLASWQLRVEGWEGEDLIEVSSQLIYQGEVMRV 729

Query: 464 TSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKG 515
            +GMWTN ITLFLFDHQLVYCK+DILKRNT+VYK R+ +DTS++I++PDGKG
Sbjct: 730 KTGMWTNNITLFLFDHQLVYCKKDILKRNTYVYKGRIYLDTSEVIDVPDGKG 781

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019008|gb|EGI59547.1| Spermatogenesis-associated protein 13 [Acromyrmex echinatior]

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 286/470 (60%), Positives = 340/470 (72%), Gaps = 60/470 (12%)

Query: 81  LRRSVSQPLGINELSPLLRRKPIGTRPGDGT---------NSLCCSDDELLSDSESSVTS 131
           LRRS+SQPLGIN+LSPL+R K  G R   G           +    DDE++SDSESS+ S
Sbjct: 371 LRRSLSQPLGINQLSPLMRVKTAGARLPSGNVLSEDEQDGRAGTSEDDEMMSDSESSIAS 430

Query: 132 LG---------MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGE 181
           L          MDE+ V+LAEAVWDHVAME+EEL FRAGDVI+VLDTLDRDWWWG+ RGE
Sbjct: 431 LTDKKKSFEQTMDEEIVMLAEAVWDHVAMESEELAFRAGDVIDVLDTLDRDWWWGSCRGE 490

Query: 182 ASGWFPSAFVRLRVSQEDTVEDCLAALASGGSK--TLRRRTSISLLSNDQVRSRVVRELI 239
             GWFP+AFVRLRVSQEDTVEDCLAA+ASGGS    LRRRTSISLLSN+QVR+ VVREL+
Sbjct: 491 Y-GWFPAAFVRLRVSQEDTVEDCLAAMASGGSSGTQLRRRTSISLLSNEQVRTSVVRELV 549

Query: 240 NTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDW 299
            TERDFVKVL DV+EGY+AECRRR DMF+ EQI+TIF NLE++L FQS FL+DLE ++DW
Sbjct: 550 QTERDFVKVLRDVAEGYIAECRRRTDMFTEEQIETIFINLEELLDFQSEFLKDLEDRIDW 609

Query: 300 DAPYKSCIGETFLKHKSGF---------HPHLGVTVRHAIKIHCSDKDKWLLFCCRSLED 350
           +APYKSC+GE FL H++GF         HP    T++   +++  ++       CR +  
Sbjct: 610 NAPYKSCVGECFLNHRAGFRMYSEYCNSHPMATATLQ---ELYQHNRYSKFFEACRLM-- 664

Query: 351 KARWLAAFQQERALVEQDREDGLEFAPAAK------ELARMSAARCHSSRPPTDHPDYVK 404
                      R L+E    DG    P  +      +LA +           TDHPDY K
Sbjct: 665 -----------RGLIEIPL-DGYLLTPIQRICKYPLQLAELLKY------TKTDHPDYHK 706

Query: 405 ITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVT 464
           I EALEAMRDVA+LINERKRRMESLEKLAAWQ RVEGWEGEDLIE SSQLI+QGE +RV 
Sbjct: 707 IQEALEAMRDVAVLINERKRRMESLEKLAAWQLRVEGWEGEDLIEVSSQLIYQGEAMRVK 766

Query: 465 SGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514
           +GMWTN ITLFLFDHQLVYCK+DILKRNT+VYK R+ +DTS++I++PDGK
Sbjct: 767 TGMWTNNITLFLFDHQLVYCKKDILKRNTYVYKGRIYLDTSEVIDVPDGK 816

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849116|ref|XP_003700192.1| PREDICTED: spermatogenesis-associated protein 13-like [Megachile rotundata]

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 286/474 (60%), Positives = 340/474 (71%), Gaps = 69/474 (14%)

Query: 81  LRRSVSQPLGINELSPLLRRKPIGTR-PG---------DGTNSLCCSDDELLSDSESSVT 130
           LRRS+SQPLGIN+LSPL+R K  G R PG         DG      SDDE++SDSESS+ 
Sbjct: 450 LRRSLSQPLGINQLSPLMRTKTAGARLPGGNVLSEDEQDGRGG--TSDDEMMSDSESSIA 507

Query: 131 SLG---------MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RG 180
           SL          MDE+ V+LAEAVWDHVAME EEL FRAGDVIEVLD LD+DWWWG+ RG
Sbjct: 508 SLTDRKKSFEQTMDEEVVILAEAVWDHVAMEPEELAFRAGDVIEVLDNLDKDWWWGSCRG 567

Query: 181 EASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKT--LRRRTSISLLSNDQVRSRVVREL 238
           E  GWFP+AFVRLRVSQEDTVEDCLAA+ASGG+    LRRRTS+SLLSN+QVR+ VVREL
Sbjct: 568 E-HGWFPAAFVRLRVSQEDTVEDCLAAMASGGTSNSQLRRRTSVSLLSNEQVRTSVVREL 626

Query: 239 INTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLD 298
           + TERDFVK+L DV+EGY+AECRR  DMF+ EQI+ IF NLED+L FQS FL+DLE+++D
Sbjct: 627 VQTERDFVKILTDVAEGYIAECRRHTDMFNEEQIERIFINLEDLLDFQSEFLKDLESRID 686

Query: 299 WDAPYKSCIGETFLKHKSGF---------HPHLGVTVRHAIKIHCSDKDKWLLFCCRSLE 349
           W+APYKSC+GE FL H++GF         HP    T++   +++  ++       CR + 
Sbjct: 687 WNAPYKSCVGECFLNHRAGFRMYSEYCNSHPMATATLQ---ELYQHNRYSKFFEACRLM- 742

Query: 350 DKARWLAAFQQERALVEQDREDGLEFAPAAK---------ELARMSAARCHSSRPPTDHP 400
                       R L+E    DG    P  +         EL + + A         DHP
Sbjct: 743 ------------RGLIEIPL-DGYLLTPVQRICKYPLQLAELLKYTKA---------DHP 780

Query: 401 DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEV 460
           DY KI EALEAMR VA+LINERKRRMESLEKLAAWQ RVEGWEGEDLIE SSQLI+QGE 
Sbjct: 781 DYHKIQEALEAMRGVAVLINERKRRMESLEKLAAWQLRVEGWEGEDLIEVSSQLIYQGEA 840

Query: 461 IRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514
           IRVT+GMWTN ITLFLFDHQLVYCK+DILKRNT+VYK R+ +DTS++I++PDGK
Sbjct: 841 IRVTTGMWTNNITLFLFDHQLVYCKKDILKRNTYVYKGRIYLDTSEVIDVPDGK 894

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179210|gb|EFN67622.1| Spermatogenesis-associated protein 13 [Camponotus floridanus]

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 284/469 (60%), Positives = 339/469 (72%), Gaps = 59/469 (12%)

Query: 81   LRRSVSQPLGINELSPLLRRKPIGTR-PGDGTNS-------LCCSDDELLSDSESSVTSL 132
            LRRS+SQPLGIN+LSPL+R K  G R PG    S          SDDE++SDSESS+ SL
Sbjct: 575  LRRSLSQPLGINQLSPLMRTKTAGVRLPGGNVLSEDEQDGRAGTSDDEMMSDSESSIASL 634

Query: 133  G---------MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEA 182
                      MDE+ V+LAEAVWDHVAME EEL FRAGDVI+VLDTLD+DWWWG+ RGE 
Sbjct: 635  TDKKKSFEQTMDEEIVILAEAVWDHVAMEPEELAFRAGDVIDVLDTLDKDWWWGSCRGE- 693

Query: 183  SGWFPSAFVRLRVSQEDTVEDCLAALASGGSK--TLRRRTSISLLSNDQVRSRVVRELIN 240
             GWFP+AFVRLRVSQEDTVEDCLAA+ASGGS    LRRRTS+SLLSN+QVR+ VVREL+ 
Sbjct: 694  HGWFPAAFVRLRVSQEDTVEDCLAAIASGGSSGTQLRRRTSVSLLSNEQVRTSVVRELVQ 753

Query: 241  TERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWD 300
            TERDFVK+L DV+EGY+AECRRR DMF+ EQI+TIF NLE++L FQS FL+DLE  +DW+
Sbjct: 754  TERDFVKILRDVAEGYIAECRRRTDMFTEEQIETIFINLEELLDFQSEFLKDLEACIDWN 813

Query: 301  APYKSCIGETFLKHKSGF---------HPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDK 351
            AP+KSC+GE FL H++GF         HP    T++   +++  ++       CR +   
Sbjct: 814  APHKSCVGECFLNHRAGFRMYSEYCNSHPMATATLQ---ELYQHNRYSKFFEACRLM--- 867

Query: 352  ARWLAAFQQERALVEQDREDGLEFAPAAK------ELARMSAARCHSSRPPTDHPDYVKI 405
                      R L+E    DG    P  +      +LA +           TDHPDY KI
Sbjct: 868  ----------RGLIEIPL-DGYLLTPVQRICKYPLQLAELLKY------TKTDHPDYHKI 910

Query: 406  TEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTS 465
             EALEAMR VA+LINERKRRMESLEKLAAWQ RVEGWEGEDLIE SSQLI+QGE +RV +
Sbjct: 911  QEALEAMRGVAVLINERKRRMESLEKLAAWQMRVEGWEGEDLIEVSSQLIYQGEAMRVKT 970

Query: 466  GMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514
            GMWTN ITLFLFDHQLVYCK+DILKRNT+VYK R+ +DTS++I++PDGK
Sbjct: 971  GMWTNNITLFLFDHQLVYCKKDILKRNTYVYKGRIYLDTSEVIDVPDGK 1019

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193179|gb|EFN76084.1| Spermatogenesis-associated protein 13 [Harpegnathos saltator]

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 282/468 (60%), Positives = 334/468 (71%), Gaps = 57/468 (12%)

Query: 81  LRRSVSQPLGINELSPLLRRKPIGTR-PGDGTNS-------LCCSDDELLSDSESSVTSL 132
           LRRS+SQPLGIN+LSPL+R K  G R PG    S          SDDE++SDSESSV SL
Sbjct: 179 LRRSLSQPLGINQLSPLMRTKTAGVRLPGGNVLSEDEQDGRAGTSDDEMMSDSESSVASL 238

Query: 133 G---------MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS 183
                     MDED  +LAEAVWDHVAME EEL FRAGDVI+VLDTLD+DWWWG+     
Sbjct: 239 TDRKKSLEQTMDEDVAILAEAVWDHVAMETEELAFRAGDVIDVLDTLDKDWWWGSCRGIH 298

Query: 184 GWFPSAFVRLRVSQEDTVEDCLAALASGGSKT--LRRRTSISLLSNDQVRSRVVRELINT 241
           GWFP+AFVRLRVSQEDTVEDCLAA+ASG S    LRRRTS+SLLSN+QVR+ VVREL+ T
Sbjct: 299 GWFPAAFVRLRVSQEDTVEDCLAAMASGVSSATQLRRRTSVSLLSNEQVRTSVVRELVQT 358

Query: 242 ERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDA 301
           ERDFVKVL DV+EGY+AECRR  DMF+ EQI+TIF NLE++L FQS FL+DLE  +DW+A
Sbjct: 359 ERDFVKVLRDVAEGYIAECRRHTDMFTEEQIETIFINLEELLDFQSEFLKDLEACIDWNA 418

Query: 302 PYKSCIGETFLKHKSGF---------HPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKA 352
           P+KSC+GE FL H++GF         HP    T++   +++  ++       CR +    
Sbjct: 419 PHKSCVGECFLNHRAGFRMYSEYCNSHPMAMATLQ---ELYQHNRYSKFFEACRLM---- 471

Query: 353 RWLAAFQQERALVEQDREDGLEFAPAAK------ELARMSAARCHSSRPPTDHPDYVKIT 406
                    R L+E    DG    P  +      +LA +           TDHPDY KI 
Sbjct: 472 ---------RGLIEIPL-DGYLLTPVQRICKYPLQLAELFKY------TKTDHPDYHKIQ 515

Query: 407 EALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSG 466
           EALEAMR VA+LINERKRRMESLEKLAAWQ RVEGWEGEDLIE SSQLI+QGE +RVT+G
Sbjct: 516 EALEAMRGVAVLINERKRRMESLEKLAAWQMRVEGWEGEDLIEVSSQLIYQGEAMRVTTG 575

Query: 467 MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514
           MWTN ITLFLFDHQLVYCK+DILKRNT+VYK R+ +DTS++I++PDGK
Sbjct: 576 MWTNNITLFLFDHQLVYCKKDILKRNTYVYKGRIYLDTSEVIDVPDGK 623

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270015460|gb|EFA11908.1| hypothetical protein TcasGA2_TC004065 [Tribolium castaneum]

 Score =  501 bits (1289), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 264/441 (59%), Positives = 326/441 (73%), Gaps = 20/441 (4%)

Query: 81  LRRSVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSL---GMDED 137
           LRRS+SQPL I++LSPL+R K  G +    T S   SDDE +SDSESS+ SL       +
Sbjct: 404 LRRSLSQPLDIDKLSPLMRTKTAGLK---TTGSATTSDDEAMSDSESSIASLTDRKKSLE 460

Query: 138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ 197
            V+LAEAV+DHVA EAEEL FRAGD+IEVL+T +R+WWWGT    SGWFPS FVRLRVSQ
Sbjct: 461 MVILAEAVFDHVAFEAEELAFRAGDLIEVLETANREWWWGTCSGKSGWFPSQFVRLRVSQ 520

Query: 198 EDTVEDCLAALASGG--SKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEG 255
           EDTVEDCLAA+ASG   +  LRRRTSISLLSNDQVR+ VV+EL+ TERDFVKVL DV+EG
Sbjct: 521 EDTVEDCLAAMASGHGIATQLRRRTSISLLSNDQVRTSVVKELLRTERDFVKVLEDVAEG 580

Query: 256 YLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHK 315
           Y+AECR+R DMF+ EQI+TIF NLEDIL FQ++F++DLE ++D++APYKSC+G  FLKH+
Sbjct: 581 YIAECRKRTDMFTEEQIKTIFINLEDILHFQANFVKDLEAQIDFEAPYKSCVGGCFLKHR 640

Query: 316 SGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEF 375
           +GF  +      H             L         +++  A +  R L+E    DG   
Sbjct: 641 AGFKMYSEYCNSHPTATAA-------LQELYQYNHYSKFFEACRLMRGLIEIPL-DGYLL 692

Query: 376 APAAK--ELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLA 433
            P  +  +     A     +RP  DH DY +I EAL+AMR VA+LINERKRRMESLEKLA
Sbjct: 693 TPVQRICKYPLQLAELLKYTRP--DHKDYDEIKEALDAMRGVAVLINERKRRMESLEKLA 750

Query: 434 AWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNT 493
           AWQQRVEGWEGEDLI++S+QLIHQG+V++VT+GMWTN ITLFLFDHQ+VYCK+DILKRNT
Sbjct: 751 AWQQRVEGWEGEDLIDSSTQLIHQGDVVKVTTGMWTNNITLFLFDHQVVYCKKDILKRNT 810

Query: 494 HVYKARLNIDTSQIINLPDGK 514
           +VYK R+  +TS+II++ DGK
Sbjct: 811 YVYKGRICTETSEIIDVTDGK 831

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	518
UNIPROTKB|F1NVB0	504	ARHGEF4 "Uncharacterized prote	0.708	0.728	0.405	1.2e-89
UNIPROTKB|E1C9C1	523	ARHGEF9 "Uncharacterized prote	0.704	0.697	0.392	3.5e-84
MGI|MGI:2442507	484	Arhgef4 "Rho guanine nucleotid	0.681	0.729	0.402	5.1e-81
RGD|1586179	484	Arhgef4 "Rho guanine nucleotid	0.681	0.729	0.405	5.1e-81
ZFIN|ZDB-GENE-030131-7745	514	arhgef9b "Cdc42 guanine nucleo	0.694	0.700	0.389	3.6e-80
UNIPROTKB|F1MAZ5	688	ARHGEF4 "Uncharacterized prote	0.704	0.530	0.424	4.3e-77
UNIPROTKB|F1PPF4	591	ARHGEF4 "Uncharacterized prote	0.702	0.615	0.410	1.9e-76
UNIPROTKB|Q9NR80	690	ARHGEF4 "Rho guanine nucleotid	0.702	0.527	0.418	3.9e-76
UNIPROTKB|B1AMR3	495	ARHGEF9 "Rho guanine nucleotid	0.681	0.713	0.389	4.7e-74
UNIPROTKB|D4A9J0	443	Arhgef9 "Rho guanine nucleotid	0.681	0.796	0.389	9.7e-74

UNIPROTKB|F1NVB0 ARHGEF4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 750 (269.1 bits), Expect = 1.2e-89, Sum P(2) = 1.2e-89
 Identities = 156/385 (40%), Positives = 242/385 (62%)

Query:   139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
             VV AEA+WDHV M+ +ELGF+AGDVIEV+D  +++WWWG   ++ GWFP++FVRLRV+Q+
Sbjct:     2 VVYAEALWDHVTMDDQELGFKAGDVIEVMDATNKEWWWGRILDSEGWFPASFVRLRVNQD 61

Query:   199 DTVEDCLAALASG---GSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEG 255
             + +ED    +  G    S +  RR  +   + DQ+R+ V+ E+I+TERD++K L D+ EG
Sbjct:    62 EPMEDYPVKVEGGKDDDSSSGTRRFGMGQTTKDQMRTNVINEIISTERDYIKHLKDICEG 121

Query:   256 YLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHK 315
             Y+ +CR+R DMF+ EQ++TIFGN+EDI   Q  F++ LE K + D P+ S +G  FL+++
Sbjct:   122 YIKQCRKRADMFTEEQLKTIFGNIEDIYRCQKKFVKALEKKFNKDHPHLSEVGSCFLEYQ 181

Query:   316 SGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQ-DRE-DGL 373
             + F  +           +C++     +   R L    +++  F+  R L +  D   DG 
Sbjct:   182 TEFQIY---------SEYCNNHPNACMELSR-LTKVNKYVYFFEACRLLQKMIDISLDGF 231

Query:   374 EFAPAAKELAR-MSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKL 432
                P  K     +  A       P  H D+  +  AL AM++VA LINERKRR+E+++K+
Sbjct:   232 LLTPVQKICKYPLQLAELLKYTNP-QHRDFKDVEAALNAMKNVARLINERKRRLENIDKI 290

Query:   433 AAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLF-LFDHQLVYCKRDILKR 491
             A WQ  +E WEGED++  SS+LI+ GE+ +V+     +   +F LFDHQLV CK+D+L+R
Sbjct:   291 AQWQSSIEDWEGEDVLVRSSELIYSGELTKVSHPQAKSQQRMFFLFDHQLVCCKKDLLRR 350

Query:   492 NTHVYKARLNIDTSQIINLPDGKGR 516
             +   YK+R+N+D  +I+++ DGK +
Sbjct:   351 DILYYKSRINMDDMEILDIEDGKDK 375

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

GO:0030676 "Rac guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0046847 "filopodium assembly" evidence=IEA

UNIPROTKB|E1C9C1 ARHGEF9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 707 (253.9 bits), Expect = 3.5e-84, Sum P(2) = 3.5e-84
 Identities = 150/382 (39%), Positives = 231/382 (60%)

Query:   139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
             +V AEAVWDHV M   EL F+AGDVI+VLD  ++DWWWG   +  GWFP++FVRL V+QE
Sbjct:    17 IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQE 76

Query:   199 DTVEDCLAALASGGSKTLRRRTSI--SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGY 256
             D VE+  + + +G          +  ++ + DQ+R+ V+ E+++TER ++K L D+ EGY
Sbjct:    77 DGVEEGTSEVQNGHLDPSADCLCLGRTVQNRDQMRANVINEIMSTERHYIKHLKDICEGY 136

Query:   257 LAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKS 316
             L +CR+R DMFS EQ++ IFGN+EDI  FQ  F+ DLE + + + P+ S IG  FL+H+ 
Sbjct:   137 LKQCRKRRDMFSDEQLKIIFGNIEDIYRFQMGFVRDLEKQYNNEDPHLSEIGPCFLEHQD 196

Query:   317 GFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQ-DRE-DGLE 374
             GF  +      H     C +  K +       +D +R+   F+  R L +  D   DG  
Sbjct:   197 GFWIYSEYCNNHLDA--CMELSKLM-------KD-SRYQHFFEACRLLQQMIDIAIDGFL 246

Query:   375 FAPAAKELARMSAARCHSSR-PPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLA 433
               P  K + +         +    DH DY  +  AL  MR+V + INERKRR+E+++K+A
Sbjct:   247 LTPVQK-ICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTLQINERKRRLENIDKIA 305

Query:   434 AWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLF-LFDHQLVYCKRDILKRN 492
              WQ  V  WEG+D+++ SS+LI+ GE+  +      N   +F LFDHQ+V CK+D+++R+
Sbjct:   306 QWQASVLDWEGDDILDRSSELIYTGEMSWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRD 365

Query:   493 THVYKARLNIDTSQIINLPDGK 514
                YK R+++D  +++++ DG+
Sbjct:   366 ILYYKGRIDMDKYEVVDIEDGR 387

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

MGI|MGI:2442507 Arhgef4 "Rho guanine nucleotide exchange factor (GEF) 4" [Mus musculus (taxid:10090)]

 Score = 715 (256.8 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
 Identities = 149/370 (40%), Positives = 228/370 (61%)

Query:   151 MEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALAS 210
             M+ +ELGF+AGDVIEV+D  +R+WWWG   +  GWFP++FVRLRV+Q++  +D  A  A 
Sbjct:     1 MDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDYEAPRA- 59

Query:   211 GGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPE 270
              G++        +    DQ+R+ V+ E+++TERD++K L D+ EGY+ +CR+R DMFS E
Sbjct:    60 -GAREADDSGPEAQSCKDQMRTNVINEILSTERDYIKHLRDICEGYVRQCRKREDMFSEE 118

Query:   271 QIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAI 330
             Q++TIFGN+EDI   Q +F++ LE K + + P+ S +G  FL+H++ F  +         
Sbjct:   119 QLRTIFGNIEDIYRCQKAFVKALEQKFNTERPHLSELGACFLEHQADFQIY--------- 169

Query:   331 KIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQ-DRE-DGLEFAPAAKELAR-MSA 387
               +C++     +   R L   ++++  F+  R L    D   DG    P  K     +  
Sbjct:   170 SEYCNNHPNACVELSR-LTKLSKYVYFFEACRLLQRMIDISLDGFLLTPVQKICKYPLQL 228

Query:   388 ARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDL 447
             A       P  H D+  +  AL AM++VA LINERKRR+E+++K+A WQ  +E WEGEDL
Sbjct:   229 AELLKYTHP-QHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDL 287

Query:   448 IETSSQLIHQGEVIRVTSGMWTNTITLF-LFDHQLVYCKRDILKRNTHVYKARLNIDTSQ 506
             +  SS+LIH GE+ RVT     +   +F LFD QL+YCK+D+L+R+   YK RL++D  +
Sbjct:   288 LVRSSELIHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLE 347

Query:   507 IINLPDGKGR 516
             ++++ DGK R
Sbjct:   348 VVDVEDGKDR 357

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISO

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030032 "lamellipodium assembly" evidence=ISO

GO:0030676 "Rac guanyl-nucleotide exchange factor activity" evidence=ISO

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046847 "filopodium assembly" evidence=ISO

RGD|1586179 Arhgef4 "Rho guanine nucleotide exchange factor (GEF) 4" [Rattus norvegicus (taxid:10116)]

 Score = 715 (256.8 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
 Identities = 150/370 (40%), Positives = 227/370 (61%)

Query:   151 MEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALAS 210
             M+ +ELGF+AGDVIEV+D  +R+WWWG   +  GWFP++FVRLRV+Q++  +D  A  A 
Sbjct:     1 MDDQELGFKAGDVIEVMDATNREWWWGRVVDGEGWFPASFVRLRVNQDEPADDYEAPRAG 60

Query:   211 GGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPE 270
              G        + S    DQ+R+ V+ E+++TERD++K L D+ EGY+ +CR+R DMFS E
Sbjct:    61 AGEADDSGPEAQSC--KDQMRTNVINEILSTERDYIKHLRDICEGYVRQCRKREDMFSEE 118

Query:   271 QIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAI 330
             Q++TIFGN+EDI   Q +F++ LE K + + P+ S +G  FL+H++ F  +         
Sbjct:   119 QLRTIFGNIEDIYRCQKAFVKALEQKFNTERPHLSELGACFLEHQADFQIY--------- 169

Query:   331 KIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQ-DRE-DGLEFAPAAKELAR-MSA 387
               +C++     +   R L   ++++  F+  R L    D   DG    P  K     +  
Sbjct:   170 SEYCNNHPNACVELSR-LTKLSKYVYFFEACRLLQRMIDISLDGFLLTPVQKICKYPLQL 228

Query:   388 ARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDL 447
             A       P  H D+  +  AL AM++VA LINERKRR+E+++K+A WQ  +E WEGEDL
Sbjct:   229 AELLKYTHP-QHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDL 287

Query:   448 IETSSQLIHQGEVIRVTSGMWTNTITLF-LFDHQLVYCKRDILKRNTHVYKARLNIDTSQ 506
             +  SS+LIH GE+ RVT     +   +F LFD QL+YCK+D+L+R+   YK RL++D  +
Sbjct:   288 LVRSSELIHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLE 347

Query:   507 IINLPDGKGR 516
             ++++ DGK R
Sbjct:   348 VVDVEDGKDR 357

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISO

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA;ISO

GO:0030032 "lamellipodium assembly" evidence=IEA;ISO

GO:0030676 "Rac guanyl-nucleotide exchange factor activity" evidence=IEA;ISO

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0046847 "filopodium assembly" evidence=IEA;ISO

ZFIN|ZDB-GENE-030131-7745 arhgef9b "Cdc42 guanine nucleotide exchange factor (GEF) 9b" [Danio rerio (taxid:7955)]

 Score = 667 (239.9 bits), Expect = 3.6e-80, Sum P(2) = 3.6e-80
 Identities = 152/390 (38%), Positives = 224/390 (57%)

Query:   139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
             VV AEAVWDHV M   EL F+AGDVI+VLD  ++DWWWG   +  GWFP++FVRL V+QE
Sbjct:     8 VVSAEAVWDHVTMAERELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQE 67

Query:   199 DTVEDCLAALASGGSKTLRRRTSIS---------LLSNDQVRSRVVRELINTERDFVKVL 249
             +   +     A G S+     T  S         L + DQ+R+ V+ E+++TER ++K L
Sbjct:    68 NIATES----AEGASEVQNGHTDPSNGCLCIGQPLQNRDQMRANVINEIMSTERHYIKHL 123

Query:   250 HDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGE 309
              D+ EGYL +CR+R DMF+ +Q++ IFGN+EDI  FQ  F+ DLE + + + P+ S IG 
Sbjct:   124 KDICEGYLRQCRKRIDMFNDDQLKVIFGNIEDIYRFQMGFVRDLEKQYNIEEPHLSEIGP 183

Query:   310 TFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQ-D 368
              FL+H+ GF  +      H     C +  K +       +D  R+   F+  R L +  D
Sbjct:   184 CFLEHQDGFWIYSEYCNNHLDA--CMELSKLM-------KD-GRYQHFFEACRLLQQMID 233

Query:   369 RE-DGLEFAPAAKELARMSAARCHSSR-PPTDHPDYVKITEALEAMRDVAMLINERKRRM 426
                DG    P  K + +         +    +H DY  +  AL  MR+V   INERKRR+
Sbjct:   234 IAIDGFLLTPVQK-ICKYPLQLAELLKYTAQEHSDYRYVAAALAVMRNVTQQINERKRRL 292

Query:   427 ESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEV--IRVTSGMWTNTITLFLFDHQLVYC 484
             E+++K+A WQ  V  WEG+D+++ SS+LI+ GE+  I    G     +  FLFDHQLV C
Sbjct:   293 ENIDKIAQWQASVLDWEGDDILDRSSELIYTGEMSWIYQPYGRSQQRV-FFLFDHQLVLC 351

Query:   485 KRDILKRNTHVYKARLNIDTSQIINLPDGK 514
             K+D+++R+   YK R+++D   + +  DG+
Sbjct:   352 KKDLIRRDILYYKGRIDMDRYAVRDAIDGR 381

GO:0005543 "phospholipid binding" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|F1MAZ5 ARHGEF4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 162/382 (42%), Positives = 240/382 (62%)

Query:   139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
             VV AEA+WDHV M+ +ELGF+AGDVIEV+D  +R+WWWG   +  GWFP+ FVRLRV+Q+
Sbjct:   193 VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPANFVRLRVNQD 252

Query:   199 DTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLA 258
             +  +D   AL  G   T     + +  S DQ+R+ V+ E+++TERD++K L D+ EGYL 
Sbjct:   253 EPADD--EALGPGHQGTGDGGGTEAQGSRDQMRTNVINEILSTERDYIKHLRDICEGYLR 310

Query:   259 ECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGF 318
             +CR+R DMFS EQ++ IFGN+EDI   Q +F++ LE K + + P+ S +G  FL+H++ F
Sbjct:   311 QCRKRADMFSEEQLRIIFGNIEDIYRCQKAFVKALEQKFNRERPHLSELGACFLEHQADF 370

Query:   319 HPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQ-DRE-DGLEFA 376
               +           +C++     +   R L   ++++  F+  R L +  D   DG    
Sbjct:   371 QIY---------SEYCNNHPNACMELSR-LTKLSKYVYFFEACRLLQKMIDISLDGFLLT 420

Query:   377 PAAKELAR-MSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAW 435
             P  K     +  A       P  H D+  +  AL AM++VA LINERKRR+E+++K+A W
Sbjct:   421 PVQKICKYPLQLAELLKYTHP-QHRDFKDVEAALHAMKNVAQLINERKRRLENIDKIAQW 479

Query:   436 QQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLF-LFDHQLVYCKRDILKRNTH 494
             Q  +E WEGEDL+  SS+LIH GE+ RVT     +   +F LFDHQL+YCK+D+L+R+  
Sbjct:   480 QSSIEDWEGEDLLVRSSELIHSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVL 539

Query:   495 VYKARLNIDTSQIINLPDGKGR 516
              YK R+++D+ Q+++L DGK R
Sbjct:   540 YYKGRVDMDSLQVVDLEDGKDR 561

GO:0046847 "filopodium assembly" evidence=IEA

GO:0030676 "Rac guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

UNIPROTKB|F1PPF4 ARHGEF4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 157/382 (41%), Positives = 240/382 (62%)

Query:   139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
             VV AEA+WDHV M+ +ELGF+AGDVIEV+D  +R+WWWG   +  GWFP++FVRLRV+Q+
Sbjct:    97 VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQD 156

Query:   199 DTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLA 258
             +  +D       GG++    R + +  S DQ+R+ V+ E+++TERD++K L D+ E    
Sbjct:   157 EPADDAAVRAGDGGAED---RGAEAQSSRDQMRTNVINEILSTERDYIKHLRDICEXXXR 213

Query:   259 ECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGF 318
             +CR+R DMFS EQ++TIFGN+EDI   Q +F++ LE + + + P+ S +G  FL+H++ F
Sbjct:   214 QCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRERPHLSELGACFLEHQADF 273

Query:   319 HPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQ-DRE-DGLEFA 376
               +           +C++     +   R L   ++++  F+  R L +  D   DG    
Sbjct:   274 QIY---------SEYCNNHPNACVELSR-LTKLSKYVYFFEACRLLQKMIDISLDGFLLT 323

Query:   377 PAAKELAR-MSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAW 435
             P  K     +  A      PP  H D+  +  AL AM++VA LINERKRR+E+++K+A W
Sbjct:   324 PVQKICKYPLQLAELLKYTPP-QHRDFKDVEAALHAMKNVAQLINERKRRLENIDKIAQW 382

Query:   436 QQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLF-LFDHQLVYCKRDILKRNTH 494
             Q  +E WEGEDL+  SS+LI+ GE+ RVT     +   +F LFDHQL+YCK+D+L+R+  
Sbjct:   383 QSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVL 442

Query:   495 VYKARLNIDTSQIINLPDGKGR 516
              YK R+++D  ++++L DGK R
Sbjct:   443 YYKGRVDMDGLEVVDLEDGKDR 464

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|Q9NR80 ARHGEF4 "Rho guanine nucleotide exchange factor 4" [Homo sapiens (taxid:9606)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 160/382 (41%), Positives = 242/382 (63%)

Query:   139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
             VV AEA+WDHV M+ +ELGF+AGDVIEV+D  +R+WWWG   +  GWFP++FVRLRV+Q+
Sbjct:   196 VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQD 255

Query:   199 DTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLA 258
             +  +D  A LA  G+       + +  S DQ+R+ V+ E+++TERD++K L D+ EGY+ 
Sbjct:   256 EPADDD-APLA--GNSGAEDGGAEAQSSKDQMRTNVINEILSTERDYIKHLRDICEGYVR 312

Query:   259 ECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGF 318
             +CR+R DMFS EQ++TIFGN+EDI   Q +F++ LE + + + P+ S +G  FL+H++ F
Sbjct:   313 QCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRERPHLSELGACFLEHQADF 372

Query:   319 HPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQ-DRE-DGLEFA 376
               +           +C++     +   R L   ++++  F+  R L +  D   DG    
Sbjct:   373 QIY---------SEYCNNHPNACVELSR-LTKLSKYVYFFEACRLLQKMIDISLDGFLLT 422

Query:   377 PAAKELAR-MSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAW 435
             P  K     +  A       P  H D+  +  AL AM++VA LINERKRR+E+++K+A W
Sbjct:   423 PVQKICKYPLQLAELLKYTHP-QHRDFKDVEAALHAMKNVAQLINERKRRLENIDKIAQW 481

Query:   436 QQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLF-LFDHQLVYCKRDILKRNTH 494
             Q  +E WEGEDL+  SS+LI+ GE+ RVT     +   +F LFDHQL+YCK+D+L+R+  
Sbjct:   482 QSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVL 541

Query:   495 VYKARLNIDTSQIINLPDGKGR 516
              YK RL++D  ++++L DGK R
Sbjct:   542 YYKGRLDMDGLEVVDLEDGKDR 563

GO:0005543 "phospholipid binding" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0032587 "ruffle membrane" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=NAS

GO:0035556 "intracellular signal transduction" evidence=NAS

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0030032 "lamellipodium assembly" evidence=IMP

GO:0046847 "filopodium assembly" evidence=IMP

GO:0030676 "Rac guanyl-nucleotide exchange factor activity" evidence=IMP

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IMP

GO:0005829 "cytosol" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

UNIPROTKB|B1AMR3 ARHGEF9 "Rho guanine nucleotide exchange factor 9" [Homo sapiens (taxid:9606)]

 Score = 662 (238.1 bits), Expect = 4.7e-74, Sum P(2) = 4.7e-74
 Identities = 144/370 (38%), Positives = 219/370 (59%)

Query:   151 MEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALAS 210
             M   EL F+AGDVI+VLD  ++DWWWG   +  GWFP++FVRL V+QED VE+  + + +
Sbjct:     1 MANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDEVEEGPSDVQN 60

Query:   211 GGSKTLRRRTSIS--LLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFS 268
             G          +   L + DQ+R+ V+ E+++TER ++K L D+ EGYL +CR+R DMFS
Sbjct:    61 GHLDPNSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLKDICEGYLKQCRKRRDMFS 120

Query:   269 PEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRH 328
              EQ++ IFGN+EDI  FQ  F+ DLE + + D P+ S IG  FL+H+ GF  +      H
Sbjct:   121 DEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHLSEIGPCFLEHQDGFWIYSEYCNNH 180

Query:   329 AIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQ-DRE-DGLEFAPAAKELARMS 386
                  C +  K +       +D +R+   F+  R L +  D   DG    P  K + +  
Sbjct:   181 LDA--CMELSKLM-------KD-SRYQHFFEACRLLQQMIDIAIDGFLLTPVQK-ICKYP 229

Query:   387 AARCHSSR-PPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGE 445
                    +    DH DY  +  AL  MR+V   INERKRR+E+++K+A WQ  V  WEGE
Sbjct:   230 LQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQINERKRRLENIDKIAQWQASVLDWEGE 289

Query:   446 DLIETSSQLIHQGEVIRVTSGMWTNTITLF-LFDHQLVYCKRDILKRNTHVYKARLNIDT 504
             D+++ SS+LI+ GE+  +      N   +F LFDHQ+V CK+D+++R+   YK R+++D 
Sbjct:   290 DILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDK 349

Query:   505 SQIINLPDGK 514
              +++++ DG+
Sbjct:   350 YEVVDIEDGR 359

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

UNIPROTKB|D4A9J0 Arhgef9 "Rho guanine nucleotide exchange factor 9" [Rattus norvegicus (taxid:10116)]

 Score = 659 (237.0 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
 Identities = 144/370 (38%), Positives = 219/370 (59%)

Query:   151 MEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALAS 210
             M   EL F+AGDVI+VLD  ++DWWWG   +  GWFP++FVRL V+QED VE+  + + +
Sbjct:     1 MANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDGVEEGPSDVQN 60

Query:   211 GGSKTLRRRTSIS--LLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFS 268
             G          +   L + DQ+R+ V+ E+++TER ++K L D+ EGYL +CR+R DMFS
Sbjct:    61 GHLDPNSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLKDICEGYLKQCRKRRDMFS 120

Query:   269 PEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRH 328
              EQ++ IFGN+EDI  FQ  F+ DLE + + D P+ S IG  FL+H+ GF  +      H
Sbjct:   121 DEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHLSEIGPCFLEHQDGFWIYSEYCNNH 180

Query:   329 AIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQ-DRE-DGLEFAPAAKELARMS 386
                  C +  K +       +D +R+   F+  R L +  D   DG    P  K + +  
Sbjct:   181 LDA--CMELSKLM-------KD-SRYQHFFEACRLLQQMIDIAIDGFLLTPVQK-ICKYP 229

Query:   387 AARCHSSR-PPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGE 445
                    +    DH DY  +  AL  MR+V   INERKRR+E+++K+A WQ  V  WEG+
Sbjct:   230 LQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQINERKRRLENIDKIAQWQASVLDWEGD 289

Query:   446 DLIETSSQLIHQGEVIRVTSGMWTNTITLF-LFDHQLVYCKRDILKRNTHVYKARLNIDT 504
             D+++ SS+LI+ GE+  +      N   +F LFDHQ+V CK+D+++R+   YK R+++D 
Sbjct:   290 DILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDK 349

Query:   505 SQIINLPDGK 514
              ++I++ DG+
Sbjct:   350 YEVIDIEDGR 359

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	518
cd01224	139	cd01224, PH_Collybistin_ASEF, Collybistin/APC-stim	1e-41
pfam00621	179	pfam00621, RhoGEF, RhoGEF domain	3e-26
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	4e-25
cd00160	181	cd00160, RhoGEF, Guanine nucleotide exchange facto	2e-23
smart00325	180	smart00325, RhoGEF, Guanine nucleotide exchange fa	8e-22
cd11973	73	cd11973, SH3_ASEF, Src homology 3 domain of APC-St	2e-21
cd11975	62	cd11975, SH3_ARHGEF9, Src homology 3 domain of the	2e-19
cd11974	54	cd11974, SH3_ASEF2, Src homology 3 domain of APC-S	3e-18
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	2e-17
cd01224	139	cd01224, PH_Collybistin_ASEF, Collybistin/APC-stim	3e-16
cd11973	73	cd11973, SH3_ASEF, Src homology 3 domain of APC-St	1e-13
smart00326	56	smart00326, SH3, Src homology 3 domains	1e-13
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	2e-13
cd11974	54	cd11974, SH3_ASEF2, Src homology 3 domain of APC-S	1e-12
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	2e-12
cd11975	62	cd11975, SH3_ARHGEF9, Src homology 3 domain of the	3e-12
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	1e-10
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	2e-10
smart00326	56	smart00326, SH3, Src homology 3 domains	2e-09
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	2e-09
cd11869	54	cd11869, SH3_p40phox, Src Homology 3 domain of the	2e-09
cd11833	53	cd11833, SH3_Stac_1, First C-terminal Src homology	3e-09
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	4e-09
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	4e-09
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	4e-09
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	5e-09
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	8e-09
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	2e-08
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	6e-08
pfam00018	47	pfam00018, SH3_1, SH3 domain	7e-08
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	1e-07
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	1e-07
cd11963	57	cd11963, SH3_STAM2, Src homology 3 domain of Signa	1e-07
cd11794	51	cd11794, SH3_DNMBP_N1, First N-terminal Src homolo	1e-07
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	2e-07
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	3e-07
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	4e-07
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	4e-07
cd11838	52	cd11838, SH3_Intersectin_3, Third Src homology 3 d	5e-07
cd11986	53	cd11986, SH3_Stac3_1, First C-terminal Src homolog	6e-07
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	7e-07
cd11845	52	cd11845, SH3_Src_like, Src homology 3 domain of Sr	8e-07
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	8e-07
cd11991	52	cd11991, SH3_Intersectin1_3, Third Src homology 3	9e-07
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	1e-06
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	1e-06
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	1e-06
cd11954	57	cd11954, SH3_ASPP1, Src Homology 3 domain of Apopt	1e-06
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	1e-06
cd11796	51	cd11796, SH3_DNMBP_N3, Third N-terminal Src homolo	1e-06
cd11806	53	cd11806, SH3_PRMT2, Src homology 3 domain of Prote	1e-06
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	2e-06
cd11829	52	cd11829, SH3_GAS7, Src homology 3 domain of Growth	2e-06
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	2e-06
cd11845	52	cd11845, SH3_Src_like, Src homology 3 domain of Sr	3e-06
cd11835	54	cd11835, SH3_ARHGAP32_33, Src homology 3 domain of	3e-06
cd13243	147	cd13243, PH_PLEKHG1_G2_G3, Pleckstrin homology dom	3e-06
cd12055	53	cd12055, SH3_CIN85_2, Second Src Homology 3 domain	4e-06
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	5e-06
cd11813	53	cd11813, SH3_SGSM3, Src Homology 3 domain of Small	5e-06
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	5e-06
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	5e-06
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	7e-06
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	7e-06
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	8e-06
pfam00018	47	pfam00018, SH3_1, SH3 domain	8e-06
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	9e-06
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	9e-06
cd11962	54	cd11962, SH3_Abp1_fungi_C1, First C-terminal Src h	1e-05
cd11883	55	cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25	1e-05
cd11889	53	cd11889, SH3_Cyk3p-like, Src Homology 3 domain of	1e-05
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	2e-05
cd11807	57	cd11807, SH3_ASPP, Src homology 3 domain of Apopto	2e-05
COG5422	1175	COG5422, ROM1, RhoGEF, Guanine nucleotide exchange	2e-05
cd11985	53	cd11985, SH3_Stac2_C, C-terminal Src homology 3 do	2e-05
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	2e-05
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	2e-05
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	3e-05
cd11957	52	cd11957, SH3_RUSC2, Src homology 3 domain of RUN a	3e-05
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	3e-05
cd11810	50	cd11810, SH3_RUSC1_like, Src homology 3 domain of	3e-05
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	3e-05
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	3e-05
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	4e-05
cd12047	53	cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 do	4e-05
cd11884	56	cd11884, SH3_MYO15, Src Homology 3 domain of Myosi	4e-05
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	4e-05
cd11812	52	cd11812, SH3_AHI-1, Src Homology 3 domain of Abels	5e-05
cd11954	57	cd11954, SH3_ASPP1, Src Homology 3 domain of Apopt	6e-05
cd11818	50	cd11818, SH3_Eve1_5, Fifth Src homology 3 domain o	6e-05
cd11927	54	cd11927, SH3_SH3RF1_1, First Src Homology 3 domain	6e-05
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	6e-05
cd12001	68	cd12001, SH3_BCAR1, Src homology 3 domain of the C	6e-05
cd12001	68	cd12001, SH3_BCAR1, Src homology 3 domain of the C	6e-05
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	6e-05
cd12015	53	cd12015, SH3_Tks_1, First Src homology 3 domain of	7e-05
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	7e-05
cd11833	53	cd11833, SH3_Stac_1, First C-terminal Src homology	8e-05
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	8e-05
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	8e-05
cd12024	53	cd12024, SH3_NoxO1_2, Second or C-terminal Src hom	8e-05
cd11806	53	cd11806, SH3_PRMT2, Src homology 3 domain of Prote	9e-05
cd12022	53	cd12022, SH3_p47phox_2, Second or C-terminal Src h	9e-05
cd11952	56	cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of	9e-05
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	9e-05
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	9e-05
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	1e-04
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	1e-04
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	1e-04
cd11989	52	cd11989, SH3_Intersectin1_2, Second Src homology 3	1e-04
cd11958	51	cd11958, SH3_RUSC1, Src homology 3 domain of RUN a	1e-04
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	1e-04
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	2e-04
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	2e-04
cd11832	50	cd11832, SH3_Shank, Src homology 3 domain of SH3 a	2e-04
cd11847	58	cd11847, SH3_Brk, Src homology 3 domain of Brk (Br	2e-04
cd11847	58	cd11847, SH3_Brk, Src homology 3 domain of Brk (Br	2e-04
cd11876	58	cd11876, SH3_MLK, Src Homology 3 domain of Mixed L	2e-04
cd11999	56	cd11999, SH3_PACSIN_like, Src homology 3 domain of	2e-04
cd11935	58	cd11935, SH3_Nebulette_C, C-terminal Src Homology	2e-04
cd11933	58	cd11933, SH3_Nebulin_C, C-terminal Src Homology 3	2e-04
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	2e-04
cd11774	52	cd11774, SH3_Sla1p_2, Second Src Homology 3 domain	2e-04
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	3e-04
cd11844	56	cd11844, SH3_CAS, Src homology 3 domain of CAS (Cr	3e-04
cd11844	56	cd11844, SH3_CAS, Src homology 3 domain of CAS (Cr	3e-04
cd11779	57	cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain	3e-04
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	4e-04
cd11807	57	cd11807, SH3_ASPP, Src homology 3 domain of Apopto	4e-04
cd11810	50	cd11810, SH3_RUSC1_like, Src homology 3 domain of	4e-04
cd11952	56	cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of	4e-04
cd11990	52	cd11990, SH3_Intersectin2_2, Second Src homology 3	4e-04
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	4e-04
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	4e-04
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	4e-04
cd12019	53	cd12019, SH3_Tks5_4, Fourth Src homology 3 domain	4e-04
cd11963	57	cd11963, SH3_STAM2, Src homology 3 domain of Signa	5e-04
cd11789	55	cd11789, SH3_Nebulin_family_C, C-terminal Src Homo	5e-04
cd11809	53	cd11809, SH3_srGAP, Src homology 3 domain of Slit-	6e-04
cd12003	62	cd12003, SH3_EFS, Src homology 3 domain of CAS (Cr	6e-04
cd12003	62	cd12003, SH3_EFS, Src homology 3 domain of CAS (Cr	6e-04
cd11774	52	cd11774, SH3_Sla1p_2, Second Src Homology 3 domain	7e-04
cd11916	59	cd11916, SH3_Sorbs1_3, Third (or C-terminal) Src H	7e-04
cd11869	54	cd11869, SH3_p40phox, Src Homology 3 domain of the	8e-04
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	8e-04
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	8e-04
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	9e-04
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	0.001
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	0.001
cd01261	109	cd01261, PH_SOS, Son of Sevenless (SOS) Pleckstrin	0.001
cd12017	53	cd12017, SH3_Tks_3, Third Src homology 3 domain of	0.001
cd11804	52	cd11804, SH3_GRB2_like_N, N-terminal Src homology	0.001
cd11956	55	cd11956, SH3_srGAP4, Src homology 3 domain of Slit	0.001
cd11795	54	cd11795, SH3_DNMBP_N2, Second N-terminal Src homol	0.001
cd11895	58	cd11895, SH3_FCHSD1_2, Second Src Homology 3 domai	0.001
cd11794	51	cd11794, SH3_DNMBP_N1, First N-terminal Src homolo	0.002
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	0.002
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	0.002
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	0.002
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	0.002
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	0.002
cd11958	51	cd11958, SH3_RUSC1, Src homology 3 domain of RUN a	0.002
cd11933	58	cd11933, SH3_Nebulin_C, C-terminal Src Homology 3	0.002
cd12006	56	cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn	0.002
cd11864	58	cd11864, SH3_PEX13_eumet, Src Homology 3 domain of	0.002
cd11914	59	cd11914, SH3_BAIAP2L2, Src Homology 3 domain of Br	0.002
cd12002	57	cd12002, SH3_NEDD9, Src homology 3 domain of CAS (	0.002
cd12002	57	cd12002, SH3_NEDD9, Src homology 3 domain of CAS (	0.002
cd11917	61	cd11917, SH3_Sorbs2_3, Third (or C-terminal) Src H	0.002
cd11757	52	cd11757, SH3_SH3BP4, Src Homology 3 domain of SH3	0.002
cd11994	59	cd11994, SH3_Intersectin2_4, Fourth Src homology 3	0.002
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	0.002
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	0.002
cd11797	50	cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homol	0.002
cd11986	53	cd11986, SH3_Stac3_1, First C-terminal Src homolog	0.003
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	0.003
cd12024	53	cd12024, SH3_NoxO1_2, Second or C-terminal Src hom	0.003
cd01261	109	cd01261, PH_SOS, Son of Sevenless (SOS) Pleckstrin	0.003
cd11992	52	cd11992, SH3_Intersectin2_3, Third Src homology 3	0.003
cd12074	53	cd12074, SH3_Tks5_1, First Src homology 3 domain o	0.003
cd11966	56	cd11966, SH3_ASAP2, Src homology 3 domain of ArfGA	0.003
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	0.003
cd11939	55	cd11939, SH3_ephexin1, Src homology 3 domain of th	0.003
cd11796	51	cd11796, SH3_DNMBP_N3, Third N-terminal Src homolo	0.004
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	0.004
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	0.004

>gnl|CDD|241258 cd01224, PH_Collybistin_ASEF, Collybistin/APC-stimulated guanine nucleotide exchange factor pleckstrin homology (PH) domain

 Score =  145 bits (368), Expect = 1e-41
 Identities = 50/91 (54%), Positives = 70/91 (76%)

Query: 426 MESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCK 485
           +E+LEKLAAWQ  +EGWEGEDL++ SS+LIH GE+ +++S       T FLFDHQLVYCK
Sbjct: 1   LENLEKLAAWQSSIEGWEGEDLLDRSSELIHSGELSKISSKGKAQERTFFLFDHQLVYCK 60

Query: 486 RDILKRNTHVYKARLNIDTSQIINLPDGKGR 516
           +D+LKR+  +YK R+++D  +I +L DGK +
Sbjct: 61  KDLLKRDNLIYKGRIDLDNMEIEDLEDGKDK 91

Collybistin (also called PEM2) is homologous to the Dbl proteins ASEF (also called ARHGEF4/RhoGEF4) and SPATA13 (Spermatogenesis-associated protein 13; also called ASEF2). It activates CDC42 specifically and not any other Rho-family GTPases. Collybistin consists of an SH3 domain, followed by a RhoGEF/DH and PH domain. In Dbl proteins, the DH and PH domains catalyze the exchange of GDP for GTP in Rho GTPases, allowing them to signal to downstream effectors. It induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin, which is thought to form a scaffold underneath the postsynaptic membrane linking receptors to the cytoskeleton. It also acts as a tumor suppressor that links adenomatous polyposis coli (APC) protein, a negative regulator of the Wnt signaling pathway and promotes the phosphorylation and degradation of beta-catenin, to Cdc42. Autoinhibition of collybistin is accomplished by the binding of its SH3 domain with both the RhoGEF and PH domains to block access of Cdc42 to the GTPase-binding site. Inactivation promotes cancer progression. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 139

>gnl|CDD|216028 pfam00621, RhoGEF, RhoGEF domain

 Score =  104 bits (263), Expect = 3e-26
 Identities = 63/204 (30%), Positives = 93/204 (45%), Gaps = 41/204 (20%)

Query: 234 VVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDL 293
           V++EL+ TER +V+ L  + E +L   R    + S E+I+TIF N+E+IL     FLE+L
Sbjct: 1   VIQELLQTERSYVRDLKILVEVFLKPLRES-PILSEEEIKTIFSNIEEILELHQEFLEEL 59

Query: 294 ETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKAR 353
           E +L+ + P    IG+ FLK    F  +           +CS+  +  L   + L  K  
Sbjct: 60  EERLE-EWPDIQRIGDIFLKFAPFFKVY---------STYCSNYPR-ALELLKKLRKKNP 108

Query: 354 WLAAFQQERALVEQDREDGLE----------------FAPAAKELARMSAARCHSSRPPT 397
             A F +E       R   L                      KEL +      H+   P 
Sbjct: 109 RFAKFLKECEASPLCRGLDLNSFLIKPVQRIPRYPLLL----KELLK------HT---PP 155

Query: 398 DHPDYVKITEALEAMRDVAMLINE 421
           DHPDY  + +ALEA+++VA  INE
Sbjct: 156 DHPDYEDLKKALEAIKEVASQINE 179

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that pfam00169 domains invariably occur C-terminal to RhoGEF/DH domains. Length = 179

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 97.5 bits (243), Expect = 4e-25
 Identities = 37/53 (69%), Positives = 45/53 (84%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           LAEA+WDHV M+ EELGF+AGDVIEVLD  D+DWWWG+  +  GWFP++FVRL
Sbjct: 1   LAEALWDHVTMDPEELGFKAGDVIEVLDMSDKDWWWGSIRDEEGWFPASFVRL 53

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|238091 cd00160, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain

 Score = 97.4 bits (243), Expect = 2e-23
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 25/198 (12%)

Query: 231 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFL 290
           R  V++EL+ TER++V+ L  + E +L    +     SPE+++ +FGN+E+I  F   FL
Sbjct: 1   RQEVIKELLQTERNYVRDLKLLVEVFLKPLDKELLPLSPEEVELLFGNIEEIYEFHRIFL 60

Query: 291 EDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRH--AIKI--HCSDKDKWLLFCCR 346
           + LE +++        IG+ FLK    F  +      H  A+++       +K+      
Sbjct: 61  KSLEERVEEWDKSGPRIGDVFLKLAPFFKIYSEYCSNHPDALELLKKLKKFNKFFQEFLE 120

Query: 347 SLEDKARWLAAFQQERALVEQDR----EDGLEFAPAAKELARMSAARCHSSRPPTDHPDY 402
             E +   L    +   L    R       L      KEL +      H+   P  H D 
Sbjct: 121 KAESECGRLKL--ESLLLKPVQRLTKYPLLL------KELLK------HT---PDGHEDR 163

Query: 403 VKITEALEAMRDVAMLIN 420
             + +ALEA+++VA  +N
Sbjct: 164 EDLKKALEAIKEVASQVN 181

It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Length = 181

>gnl|CDD|214619 smart00325, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases

 Score = 92.4 bits (230), Expect = 8e-22
 Identities = 52/204 (25%), Positives = 97/204 (47%), Gaps = 40/204 (19%)

Query: 234 VVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDL 293
           V++EL+ TER++V+ L  + E +L   ++   + SP +++T+FGN+E+I  F   FL++L
Sbjct: 1   VLKELLQTERNYVRDLKLLVEVFLKPLKKELKLLSPNELETLFGNIEEIYEFHRDFLDEL 60

Query: 294 ETKL-DWDAPYKSCIGETFLKHKSGFHPHLGVTVRH--AIKI--HCSDKDKWLLFCCRSL 348
           E ++ +WD   +  IG+ FLK +  F  +      H  A+++        ++  F     
Sbjct: 61  EERIEEWDDSVER-IGDVFLKLEEFFKIYSEYCSNHPDALELLKKLKKNPRFQKFL---- 115

Query: 349 EDKARWLAAFQQERALVEQDREDG-----------LEFAPAAKELARMSAARCHSSRPPT 397
               + + +  Q R L  +                L      KEL +      H+   P 
Sbjct: 116 ----KEIESSPQCRRLTLESLLLKPVQRLTKYPLLL------KELLK------HT---PE 156

Query: 398 DHPDYVKITEALEAMRDVAMLINE 421
           DH D   + +AL+A++++A  +NE
Sbjct: 157 DHEDREDLKKALKAIKELANQVNE 180

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage. Length = 180

>gnl|CDD|212906 cd11973, SH3_ASEF, Src homology 3 domain of APC-Stimulated guanine nucleotide Exchange Factor

 Score = 87.8 bits (217), Expect = 2e-21
 Identities = 36/57 (63%), Positives = 48/57 (84%)

Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV 195
           VV AEA+WDHV M+ +ELGF+AGDVIEV+D  +++WWWG   ++ GWFP++FVRLRV
Sbjct: 17  VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNKEWWWGRVLDSEGWFPASFVRLRV 73

ASEF, also called ARHGEF4, exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli). GEFs activate small GTPases by exchanging bound GDP for free GTP. ASEF can activate Rac1 or Cdc42. Truncated ASEF, which is found in colorectal cancers, is constitutively active and has been shown to promote angiogenesis and cancer cell migration. ASEF contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 73

>gnl|CDD|212908 cd11975, SH3_ARHGEF9, Src homology 3 domain of the Rho guanine nucleotide exchange factor ARHGEF9

 Score = 81.7 bits (201), Expect = 2e-19
 Identities = 36/61 (59%), Positives = 45/61 (73%)

Query: 137 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 196
             +V AEAVWDHV M   EL F+AGDVI+VLD  ++DWWWG   +  GWFP++FVRL V+
Sbjct: 2   GSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVN 61

Query: 197 Q 197
           Q
Sbjct: 62  Q 62

ARHGEF9, also called PEM2 or collybistin, selectively activates Cdc42 by exchanging bound GDP for free GTP. It is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. Mutations in the ARHGEF9 gene cause X-linked mental retardation with associated features like seizures, hyper-anxiety, aggressive behavior, and sensory hyperarousal. ARHGEF9 contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212907 cd11974, SH3_ASEF2, Src homology 3 domain of APC-Stimulated guanine nucleotide Exchange Factor 2

 Score = 77.8 bits (191), Expect = 3e-18
 Identities = 31/54 (57%), Positives = 41/54 (75%)

Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           V AEA+WDHV M+ +EL F+AGDVI VL+  ++DWWWG   +   WFP++FVRL
Sbjct: 1   VYAEALWDHVTMDDQELAFKAGDVIRVLEASNKDWWWGRNEDREAWFPASFVRL 54

ASEF2, also called Spermatogenesis-associated protein 13 (SPATA13), is a GEF that localizes with actin at the leading edge of cells and is important in cell migration and adhesion dynamics. GEFs activate small GTPases by exchanging bound GDP for free GTP. ASEF2 can activate both Rac 1 and Cdc42, but only Rac1 activation is necessary for increased cell migration and adhesion turnover. Together with APC (adenomatous polyposis coli) and Neurabin2, a scaffold protein that binds F-actin, it is involved in regulating HGF-induced cell migration. ASEF2 contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 75.9 bits (187), Expect = 2e-17
 Identities = 29/42 (69%), Positives = 35/42 (83%)

Query: 8  LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA 49
          LAEA+WDHV M+ EELGF+AGDVIEVLD  D+DWWWG+  + 
Sbjct: 1  LAEALWDHVTMDPEELGFKAGDVIEVLDMSDKDWWWGSIRDE 42

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|241258 cd01224, PH_Collybistin_ASEF, Collybistin/APC-stimulated guanine nucleotide exchange factor pleckstrin homology (PH) domain

 Score = 75.0 bits (185), Expect = 3e-16
 Identities = 25/48 (52%), Positives = 34/48 (70%)

Query: 321 HLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQD 368
             GVTV++A KI+ + K+KW L C +S E+K RWL AF +ER  VE+D
Sbjct: 92  DSGVTVKNAWKIYNTSKNKWYLLCAKSAEEKQRWLEAFAEEREKVEED 139

Collybistin (also called PEM2) is homologous to the Dbl proteins ASEF (also called ARHGEF4/RhoGEF4) and SPATA13 (Spermatogenesis-associated protein 13; also called ASEF2). It activates CDC42 specifically and not any other Rho-family GTPases. Collybistin consists of an SH3 domain, followed by a RhoGEF/DH and PH domain. In Dbl proteins, the DH and PH domains catalyze the exchange of GDP for GTP in Rho GTPases, allowing them to signal to downstream effectors. It induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin, which is thought to form a scaffold underneath the postsynaptic membrane linking receptors to the cytoskeleton. It also acts as a tumor suppressor that links adenomatous polyposis coli (APC) protein, a negative regulator of the Wnt signaling pathway and promotes the phosphorylation and degradation of beta-catenin, to Cdc42. Autoinhibition of collybistin is accomplished by the binding of its SH3 domain with both the RhoGEF and PH domains to block access of Cdc42 to the GTPase-binding site. Inactivation promotes cancer progression. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 139

>gnl|CDD|212906 cd11973, SH3_ASEF, Src homology 3 domain of APC-Stimulated guanine nucleotide Exchange Factor

 Score = 65.8 bits (160), Expect = 1e-13
 Identities = 26/39 (66%), Positives = 34/39 (87%)

Query: 6  VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          VV AEA+WDHV M+ +ELGF+AGDVIEV+D  +++WWWG
Sbjct: 17 VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNKEWWWG 55

ASEF, also called ARHGEF4, exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli). GEFs activate small GTPases by exchanging bound GDP for free GTP. ASEF can activate Rac1 or Cdc42. Truncated ASEF, which is found in colorectal cancers, is constitutively active and has been shown to promote angiogenesis and cancer cell migration. ASEF contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 73

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 65.3 bits (160), Expect = 1e-13
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG-EASGWFPSAFVR 192
             A++D+ A + +EL F+ GD+I VL+  D  WW G  G    G FPS +V 
Sbjct: 5   VRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVE 56

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 64.0 bits (157), Expect = 2e-13
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAF 190
           A A++D+ A + +EL F+ GD+I VL+  D  WW G   G   G FP+ +
Sbjct: 2   ARALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELNGGREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212907 cd11974, SH3_ASEF2, Src homology 3 domain of APC-Stimulated guanine nucleotide Exchange Factor 2

 Score = 62.0 bits (150), Expect = 1e-12
 Identities = 24/38 (63%), Positives = 31/38 (81%)

Query: 7  VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          V AEA+WDHV M+ +EL F+AGDVI VL+  ++DWWWG
Sbjct: 1  VYAEALWDHVTMDDQELAFKAGDVIRVLEASNKDWWWG 38

ASEF2, also called Spermatogenesis-associated protein 13 (SPATA13), is a GEF that localizes with actin at the leading edge of cells and is important in cell migration and adhesion dynamics. GEFs activate small GTPases by exchanging bound GDP for free GTP. ASEF2 can activate both Rac 1 and Cdc42, but only Rac1 activation is necessary for increased cell migration and adhesion turnover. Together with APC (adenomatous polyposis coli) and Neurabin2, a scaffold protein that binds F-actin, it is involved in regulating HGF-induced cell migration. ASEF2 contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 61.8 bits (150), Expect = 2e-12
 Identities = 23/51 (45%), Positives = 32/51 (62%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
             A++D  A+E +ELGF +GDVIEVLD+ +  WW G      G FP+ +V 
Sbjct: 2   VRALYDFEALEDDELGFNSGDVIEVLDSSNPSWWKGRLHGKLGLFPANYVA 52

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212908 cd11975, SH3_ARHGEF9, Src homology 3 domain of the Rho guanine nucleotide exchange factor ARHGEF9

 Score = 61.6 bits (149), Expect = 3e-12
 Identities = 26/41 (63%), Positives = 31/41 (75%)

Query: 4  DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
            +V AEAVWDHV M   EL F+AGDVI+VLD  ++DWWWG
Sbjct: 2  GSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWG 42

ARHGEF9, also called PEM2 or collybistin, selectively activates Cdc42 by exchanging bound GDP for free GTP. It is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. Mutations in the ARHGEF9 gene cause X-linked mental retardation with associated features like seizures, hyper-anxiety, aggressive behavior, and sensory hyperarousal. ARHGEF9 contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 56.3 bits (137), Expect = 1e-10
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 147 DHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
           D+VA +  EL  + GDV++VLD  D  WW G RG   G  PS++V 
Sbjct: 7   DYVATDPNELSLKKGDVVKVLDKDDNGWWEGERGGRRGLVPSSYVE 52

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 22/51 (43%), Positives = 29/51 (56%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
             +A++D    E  EL FR GD+I VLD+ D DWW G      G FP+ +V
Sbjct: 1   RVQALYDFNPQEPGELEFRRGDIITVLDSSDPDWWKGELRGRVGIFPANYV 51

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 52.9 bits (128), Expect = 2e-09
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
            A++D+ A + +EL F+ GD+I VL+  D  WW G  G
Sbjct: 5  VRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLG 43

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 52.9 bits (128), Expect = 2e-09
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
          A A++D+ A + +EL F+ GD+I VL+  D  WW G   
Sbjct: 2  ARALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELN 40

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212802 cd11869, SH3_p40phox, Src Homology 3 domain of the p40phox subunit of NADPH oxidase

 Score = 52.9 bits (127), Expect = 2e-09
 Identities = 23/52 (44%), Positives = 34/52 (65%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           AEA++D       EL F+AGDVI +L  +++DW  GT   A+G FP +FV++
Sbjct: 2   AEALFDFTGNSKLELNFKAGDVIFLLSRVNKDWLEGTVRGATGIFPLSFVKI 53

p40phox, also called Neutrophil cytosol factor 4 (NCF-4), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. It contains an N-terminal PX domain, a central SH3 domain, and a C-terminal PB1 domain that interacts with p67phox. The SH3 domain of p40phox binds to canonical polyproline and noncanonical motifs at the C-terminus of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212767 cd11833, SH3_Stac_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing (Stac) proteins

 Score = 52.5 bits (126), Expect = 3e-09
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A++     E E+L  R GD I +LD  + DWW G   +  G+FP+ FV
Sbjct: 4   ALYKFKPQENEDLEMRPGDKITLLDDSNEDWWKGKIEDRVGFFPANFV 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. This model represents the first C-terminal SH3 domain of Stac1 and Stac3, and the single C-terminal SH3 domain of Stac2. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 52.3 bits (125), Expect = 4e-09
 Identities = 23/48 (47%), Positives = 31/48 (64%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A++D  A E  EL F+AGD+I +LD  D +WW G   + +G FPS FV
Sbjct: 5   AIYDFEAAEDNELTFKAGDIITILDDSDPNWWKGETPQGTGLFPSNFV 52

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 52.1 bits (125), Expect = 4e-09
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A++D  A E  EL F+AG++I VLD  D +WW G+     G FP+ FV
Sbjct: 5   ALYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGSNHRGEGLFPANFV 52

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 52.1 bits (125), Expect = 4e-09
 Identities = 22/51 (43%), Positives = 29/51 (56%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
            +A++D    E  ELGFR GD IEV+D  D +WW G     +G FP  +V 
Sbjct: 2   VQALFDFDPQEDGELGFRRGDFIEVMDNSDPNWWKGACHGQTGMFPRNYVT 52

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 19/53 (35%), Positives = 28/53 (52%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           L  A ++      +EL F  GD+I V   ++  WW GT    +GWFPS +V+ 
Sbjct: 1   LVRAKFNFEGTNEDELSFDKGDIITVTQVVEGGWWEGTLNGKTGWFPSNYVKE 53

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 51.4 bits (123), Expect = 8e-09
 Identities = 19/40 (47%), Positives = 26/40 (65%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
            A++D  A+E +ELGF +GDVIEVLD+ +  WW G    
Sbjct: 2  VRALYDFEALEDDELGFNSGDVIEVLDSSNPSWWKGRLHG 41

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 16/50 (32%), Positives = 31/50 (62%)

Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
            A+ D+ A   +E+  + G+V+EVL+  D  WW+  +G+  GW P++++ 
Sbjct: 3   VAIADYEAQGDDEISLQEGEVVEVLEKNDSGWWYVRKGDKEGWVPASYLE 52

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 48.8 bits (116), Expect = 6e-08
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           A++D+ A   +EL F  G +I VL+  D DWW G     +G FPS +V++
Sbjct: 5   AMYDYTANNEDELSFSKGQLINVLNKDDPDWWQGEINGVTGLFPSNYVKM 54

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 48.3 bits (116), Expect = 7e-08
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEASGWFPS 188
           A++D+ A E +EL F+ GD+I VL+  D  WW G   G   G  PS
Sbjct: 2   ALYDYTAREPDELSFKKGDIIIVLEKSDDGWWKGRLKGGKEGLIPS 47

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 8  LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
            +A++D    E  EL FR GD+I VLD+ D DWW G 
Sbjct: 1  RVQALYDFNPQEPGELEFRRGDIITVLDSSDPDWWKGE 38

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 21/50 (42%), Positives = 29/50 (58%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
            +A +D  A +  +L FR GD+IEVLD  D +WW G      G+FP  +V
Sbjct: 2   VQAQYDFSAEDPSQLSFRRGDIIEVLDCPDPNWWRGRISGRVGFFPRNYV 51

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing Adaptor Molecule 2

 Score = 48.1 bits (114), Expect = 1e-07
 Identities = 22/48 (45%), Positives = 29/48 (60%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A++D  A+E  EL F+ G++I VLD  D +WW G      G FPS FV
Sbjct: 6   ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGVGLFPSNFV 53

STAM2, also called EAST (Epidermal growth factor receptor-associated protein with SH3 and TAM domain) or Hbp (Hrs binding protein), is part of the endosomal sorting complex required for transport (ESCRT-0). It plays a role in sorting mono-ubiquinated endosomal cargo for trafficking to the lysosome for degradation. It is also involved in the regulation of exocytosis. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212728 cd11794, SH3_DNMBP_N1, First N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 23/50 (46%), Positives = 30/50 (60%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
             A++D     +EEL   AGDVIEVL  +D  W  GT+   +G FPS+FV
Sbjct: 2   VRAIFDFCPSVSEELPLFAGDVIEVLKVVDEFWLLGTKEGVTGQFPSSFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
            + ++ +     +EL  + GD IEVL  ++  WW G      G FPS FV+ 
Sbjct: 2   CKVLFSYTPQNEDELELKVGDTIEVLGEVEEGWWEGKLNGKVGVFPSNFVKE 53

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 46.9 bits (111), Expect = 3e-07
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
            ++D+ A   +EL F  G +I VL+  D DWW G      G FPS +V+L
Sbjct: 5   GMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGELNGQVGLFPSNYVKL 54

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 46.7 bits (111), Expect = 4e-07
 Identities = 21/52 (40%), Positives = 29/52 (55%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
              A++ + A + E+L F+ GDVI VL  ++ DW  G      G FPSAFV 
Sbjct: 1   QVVALFSYEASQPEDLEFQKGDVILVLSKVNEDWLEGQCKGKIGIFPSAFVE 52

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRL 193
           A+A++D+ A E  E+ F  GD+I  ++ +D  WW G       G FP+ +V L
Sbjct: 2   AKALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGVNAKGQKGLFPANYVEL 54

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212772 cd11838, SH3_Intersectin_3, Third Src homology 3 domain (or SH3C) of Intersectin

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           A++ + + E  +L F AGDVI V    D +WW GT G+ +G FPS +VR 
Sbjct: 4   ALYPYESNEPGDLTFNAGDVILVTKK-DGEWWTGTIGDRTGIFPSNYVRP 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. The SH3C of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212919 cd11986, SH3_Stac3_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 3 (Stac3)

 Score = 46.1 bits (109), Expect = 6e-07
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A++   A+E ++L F  G+ I V+D  + +WW G  GE +G+FP  F+
Sbjct: 4   ALYRFKALEKDDLDFHPGERITVIDDSNEEWWRGKIGEKTGYFPMNFI 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 46.0 bits (109), Expect = 7e-07
 Identities = 21/52 (40%), Positives = 30/52 (57%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           A+A++D+ A E  EL F   D I  ++ +D DWW G    + G FPS +V L
Sbjct: 2   AKALYDYDAAEDNELSFFENDKIINIEFVDDDWWLGECHGSRGLFPSNYVEL 53

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases

 Score = 45.7 bits (109), Expect = 8e-07
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAF 190
           A++D+ A   ++L F+ GD +++LD  D DWW          G+ PS +
Sbjct: 4   ALYDYEARTDDDLSFKKGDRLQILDDSDGDWWLARHLSTGKEGYIPSNY 52

Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 45.4 bits (108), Expect = 8e-07
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG-TRGEASGWFPSAFVRL 193
           A A++   A +   L F  GD+I VL+  +  WW+G   G   GWFP ++V+ 
Sbjct: 2   ATALYPWRAKKENHLSFAKGDIITVLEQQE-MWWFGELEGGEEGWFPKSYVKE 53

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212924 cd11991, SH3_Intersectin1_3, Third Src homology 3 domain (or SH3C) of Intersectin-1

 Score = 45.7 bits (108), Expect = 9e-07
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           A++ + + E  +L F+ GDVI V    D DWW GT G+ +G FPS +VR 
Sbjct: 4   AMYTYESNEQGDLTFQQGDVILVTKK-DGDWWTGTVGDKTGVFPSNYVRP 52

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 20/48 (41%), Positives = 28/48 (58%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A++ + A   +EL F+ GD+I VL   D DWW G     +G FPS +V
Sbjct: 4   ALFPYTAQNEDELSFQKGDIINVLSKDDPDWWRGELNGQTGLFPSNYV 51

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDR--DWWWGTRGEASGWFPSAFVRL 193
           A A++D    +  +L F+ GD+I +L   D   DWW G  G   G FP+ +V L
Sbjct: 2   AVALYDFAGEQPGDLAFQKGDIITILKKSDSQNDWWTGRIGGREGIFPANYVEL 55

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A++D+ A   +EL F  GD++ + D  D +WW  T G  +G  PS +V
Sbjct: 4   ALYDYEAQHPDELSFEEGDLLYISDKSDPNWWKATCGGKTGLIPSNYV 51

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212887 cd11954, SH3_ASPP1, Src Homology 3 domain of Apoptosis Stimulating of p53 protein 1

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVL---DTLDRDWWWGTRGEASGWFPSAFVRL 193
           +  A+WD+ A  A+EL F+ GD I +L   D  + +WWW    +  G+ P   + L
Sbjct: 2   MVYALWDYEAQNADELSFQEGDAITILRRKDDSETEWWWARLNDKEGYVPKNLLGL 57

ASPP1, like ASPP2, activates the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73). In addition, it functions in the cytoplasm to regulate the nuclear localization of the transcriptional cofactors YAP and TAZ by inihibiting their phosphorylation; YAP and TAZ are important regulators of cell expansion, differentiation, migration, and invasion. ASPP1 is downregulated in breast tumors expressing wild-type p53. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of ASPP1 contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 16/54 (29%), Positives = 28/54 (51%)

Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           + A A++D+     +E+ F   + I  ++ +D  WW GT     G FP+ +V L
Sbjct: 1   ICAVALYDYQGEGDDEISFDPQETITDIEMVDEGWWKGTCHGHRGLFPANYVEL 54

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 19/50 (38%), Positives = 24/50 (48%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A  + D  A   EEL  R GDV+ +   LD+ W+ G      G FP  FV
Sbjct: 2   ARVLQDLSAQLDEELDLREGDVVTITGILDKGWFRGELNGRRGIFPEGFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212740 cd11806, SH3_PRMT2, Src homology 3 domain of Protein arginine N-methyltransferase 2

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A+ D VA +  +L F +GD + VL     DWWW       G+ P++ +
Sbjct: 4   AIADFVATDDSQLSFESGDKLLVLRKPSVDWWWAEHNGCCGYIPASHL 51

PRMT2, also called HRMT1L1, belongs to the arginine methyltransferase protein family. It functions as a coactivator to both estrogen receptor alpha (ER-alpha) and androgen receptor (AR), presumably through arginine methylation. The ER-alpha transcription factor is involved in cell proliferation, differentiation, morphogenesis, and apoptosis, and is also implicated in the development and progression of breast cancer. PRMT2 and its variants are upregulated in breast cancer cells and may be involved in modulating the ER-alpha signaling pathway during formation of breast cancer. PRMT2 also plays a role in regulating the function of E2F transcription factors, which are critical cell cycle regulators, by binding to the retinoblastoma gene product (RB). It contains an N-terminal SH3 domain and an AdoMet binding domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 18/37 (48%), Positives = 23/37 (62%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
           +A++D    E  ELGFR GD IEV+D  D +WW G 
Sbjct: 2  VQALFDFDPQEDGELGFRRGDFIEVMDNSDPNWWKGA 38

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212763 cd11829, SH3_GAS7, Src homology 3 domain of Growth Arrest Specific protein 7

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 16/36 (44%), Positives = 22/36 (61%)

Query: 156 LGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           L F AG++I VL   D  WW G +    GWFP+++V
Sbjct: 17  LSFEAGELIRVLQAPDGGWWEGEKDGLRGWFPASYV 52

GAS7 is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 19/39 (48%), Positives = 23/39 (58%)

Query: 154 EELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
           +EL F  GDVI V    +  WW GT    +GWFPS +VR
Sbjct: 14  DELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 52

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW 43
          A++D+ A   ++L F+ GD +++LD  D DWW 
Sbjct: 4  ALYDYEARTDDDLSFKKGDRLQILDDSDGDWWL 36

Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212769 cd11835, SH3_ARHGAP32_33, Src homology 3 domain of Rho GTPase-activating proteins 32 and 33, and similar proteins

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLD---TLDRDWWWGTRGEASGWFPSAFV 191
            A  +  + A   +EL    GD++ V+D     +  WW G +G   G+FPS  V
Sbjct: 1   AAHVIKRYTAQAPDELSLEVGDIVSVIDMPPPEESTWWRGKKGFQVGFFPSECV 54

Members of this family contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. RhoGAPs (or ARHGAPs) bind to Rho proteins and enhance the hydrolysis rates of bound GTP. ARHGAP32 is also called RICS, PX-RICS, p250GAP, or p200RhoGAP. It is a Rho GTPase-activating protein for Cdc42 and Rac1, and is implicated in the regulation of postsynaptic signaling and neurite outgrowth. PX-RICS, a variant of RICS that contain PX and SH3 domains, is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. ARHGAP33, also called sorting nexin 26 or TCGAP (Tc10/CDC42 GTPase-activating protein), is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|241397 cd13243, PH_PLEKHG1_G2_G3, Pleckstrin homology domain-containing family G members 1, 2, and 3 pleckstrin homology (PH) domain

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 8/107 (7%)

Query: 402 YVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVI 461
           Y  + +A++ M  VA  IN+ KR+ E   +L   Q  ++GW G DL  T  +L+ +G   
Sbjct: 1   YEVVEDAIDTMTQVAWHINDMKRKHEHAVRLQEIQSLLDGWLGPDL-TTYGELVLEG-SF 58

Query: 462 RVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQII 508
           RV  G   N   LFLFD  L+  K    KR       + +I  S ++
Sbjct: 59  RV-QGA-KNERLLFLFDKMLLITK----KREDDHLVYKTHIMCSNLM 99

PLEKHG1 (also called ARHGEF41), PLEKHG2 (also called ARHGEF42 or CLG/common-site lymphoma/leukemia guanine nucleotide exchange factor2), and PLEKHG3 (also called ARHGEF43) have RhoGEF DH/double-homology domains in tandem with a PH domain which is involved in phospholipid binding. They function as a guanine nucleotide exchange factor (GEF) and are involved in the regulation of Rho protein signal transduction. Mutations in PLEKHG1 have been associated panic disorder (PD), an anxiety disorder characterized by panic attacks and anticipatory anxiety. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 147

>gnl|CDD|212988 cd12055, SH3_CIN85_2, Second Src Homology 3 domain (SH3B) of Cbl-interacting protein of 85 kDa

 Score = 43.8 bits (103), Expect = 4e-06
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
           +  + ++    +EL  + GD+IEV+  ++  WW G     +G FPS F++
Sbjct: 3   QVAFSYLPQNEDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIK 52

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CIN85. SH3B has been shown to bind Cbl proline-rich peptides and ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 19/49 (38%), Positives = 25/49 (51%)

Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
            A+  + A   E+LGFR GD I+VL  ++  W  G      G FP  FV
Sbjct: 3   VALHRYEAQGPEDLGFREGDTIDVLSEVNEAWLEGHSDGRVGIFPKCFV 51

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212747 cd11813, SH3_SGSM3, Src Homology 3 domain of Small G protein Signaling Modulator 3

 Score = 43.3 bits (102), Expect = 5e-06
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           A+A+ D    + +ELGFR  D+I ++   D   W G      GWFP+ FV L
Sbjct: 2   AKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEL 53

SGSM3 is also called Merlin-associated protein (MAP), RUN and SH3 domain-containing protein (RUSC3), RUN and TBC1 domain-containing protein 3 (RUTBC3), Rab GTPase-activating protein 5 (RabGAP5), or Rab GAP-like protein (RabGAPLP). It is expressed ubiquitously and functions as a regulator of small G protein RAP- and RAB-mediated neuronal signaling. It is involved in modulating NGF-mediated neurite outgrowth and differentiation. It also interacts with the tumor suppressor merlin and may play a role in the merlin-associated suppression of cell growth. SGSM3 contains TBC, SH3, and RUN domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 43.2 bits (102), Expect = 5e-06
 Identities = 19/49 (38%), Positives = 25/49 (51%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAF 190
           A A++D      E+L F+ GD I V + LD +W  G      G FP AF
Sbjct: 2   AVALYDFTGETEEDLSFQRGDRILVTEHLDAEWSRGRLNGREGIFPRAF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFVRL 193
           A A++D+ A +  E+ F  GD+I  ++ +D  WW GT  + + G FP+ +V L
Sbjct: 2   ARALYDYQAADDTEISFDPGDIITDIEQIDEGWWRGTGPDGTYGLFPANYVEL 54

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 17/49 (34%), Positives = 27/49 (55%)

Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           +A++ + A   +EL  + GD+IEV +  D  WW G      G FP+ +V
Sbjct: 3   KALYSYTANREDELSLQPGDIIEVHEKQDDGWWLGELNGKKGIFPATYV 51

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 15/50 (30%), Positives = 31/50 (62%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A+A++++   E  +L F+ GD+I +   +D +W+ G      G+FP+++V
Sbjct: 2   AKALYNYEGKEPGDLSFKKGDIILLRKRIDENWYHGECNGKQGFFPASYV 51

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 42.8 bits (102), Expect = 8e-06
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 14 DHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
          D+VA +  EL  + GDV++VLD  D  WW G RG
Sbjct: 7  DYVATDPNELSLKKGDVVKVLDKDDNGWWEGERG 40

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 42.6 bits (101), Expect = 8e-06
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
          A++D+ A E +EL F+ GD+I VL+  D  WW
Sbjct: 2  ALYDYTAREPDELSFKKGDIIIVLEKSDDGWW 33

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 42.6 bits (100), Expect = 9e-06
 Identities = 17/50 (34%), Positives = 31/50 (62%)

Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
           + ++++V    +EL  + GD+I++ + ++  WW GT    SG FPS FV+
Sbjct: 4   KVLFEYVPQNEDELELKVGDIIDINEEVEEGWWSGTLNGKSGLFPSNFVK 53

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 42.8 bits (101), Expect = 9e-06
 Identities = 17/48 (35%), Positives = 25/48 (52%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A++ + A + +EL F  GD+IE+L      WW G      G FP  +V
Sbjct: 4   ALYAYDAQDTDELSFNEGDIIEILKEDPSGWWTGRLRGKEGLFPGNYV 51

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212895 cd11962, SH3_Abp1_fungi_C1, First C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 193
           A  ++D+   E  E+    G+++  ++ +D DWW GT  +GE SG FPS +V L
Sbjct: 2   AVVLYDYEKDEDNEIELVEGEIVTNIEMVDEDWWMGTNSKGE-SGLFPSNYVEL 54

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212816 cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25/Cdc25 guanine nucleotide exchange factors

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-----GWFPSAF 190
           A++D       +L F+AGD+I VL+     WW G    +S     GWFPS +
Sbjct: 4   ALYDFTPKSKNQLSFKAGDIIYVLNKDPSGWWDGVIISSSGKVKRGWFPSNY 55

This subfamily is composed of the Saccharomyces cerevisiae guanine nucleotide exchange factors (GEFs) Sdc25 and Cdc25, and similar proteins. These GEFs regulate Ras by stimulating the GDP/GTP exchange on Ras. Cdc25 is involved in the Ras/PKA pathway that plays an important role in the regulation of metabolism, stress responses, and proliferation, depending on available nutrients and conditions. Proteins in this subfamily contain an N-terminal SH3 domain as well as REM (Ras exchanger motif) and RasGEF domains at the C-terminus. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212822 cd11889, SH3_Cyk3p-like, Src Homology 3 domain of Cytokinesis protein 3 and similar proteins

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFV 191
            +AV+        +LGF  GD+IEVL   D  WW G   R  A G FPS FV
Sbjct: 2   VKAVYSWAGETEGDLGFLEGDLIEVLSIGDGSWWSGKLRRNGAEGIFPSNFV 53

Cytokinesis protein 3 (Cyk3 or Cyk3p) is a component of the actomyosin ring independent cytokinesis pathway in yeast. It interacts with Inn1 and facilitates its recruitment to the bud neck, thereby promoting cytokinesis. Cyk3p contains an N-terminal SH3 domain and a C-terminal transglutaminase-like domain. The Cyk3p SH3 domain binds to the C-terminal proline-rich region of Inn1. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 53

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
           +A +D  A +  +L FR GD+IEVLD  D +WW G
Sbjct: 2  VQAQYDFSAEDPSQLSFRRGDIIEVLDCPDPNWWRG 37

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212741 cd11807, SH3_ASPP, Src homology 3 domain of Apoptosis Stimulating of p53 proteins (ASPP)

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVL---DTLDRDWWWGTRGEASGWFP 187
           A++D+ A   +EL FR GD + VL   D  + +WWW    +  G+ P
Sbjct: 5   ALFDYEAENGDELSFREGDELTVLRKGDDDETEWWWARLNDKEGYVP 51

The ASPP family of proteins bind to important regulators of apoptosis (p53, Bcl-2, and RelA) and cell growth (APCL, PP1). They share similarity at their C-termini, where they harbor a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain. Vertebrates contain three members of the family: ASPP1, ASPP2, and iASPP. ASPP1 and ASPP2 activate the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73), while iASPP is an oncoprotein that specifically inhibits p53-induced apoptosis. The expression of ASPP proteins is altered in tumors; ASPP1 and ASPP2 are downregulated whereas iASPP is upregulated is some cancer types. ASPP proteins also bind and regulate protein phosphatase 1 (PP1), and this binding is competitive with p53 binding. The SH3 domain and the ANK repeats of ASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 66/287 (22%), Positives = 114/287 (39%), Gaps = 43/287 (14%)

Query: 231 RSRVVRELINTERDFVKVLHDVSEGY---------LAECRRRNDMFSPEQIQTIFGNLED 281
           R   + E+I TERDFVK L  + + +         + E  RRN  F    I+ +F N+ +
Sbjct: 485 RQEAIYEVIYTERDFVKDLEYLRDTWIKPLEESNIIPENARRN--F----IKHVFANINE 538

Query: 282 ILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWL 341
           I A  S  L+ L T     +P  + I + FL +   F P +          +  +++K  
Sbjct: 539 IYAVNSKLLKAL-TNRQCLSPIVNGIADIFLDYVPKFEPFIKYGASQPYAKYEFEREK-- 595

Query: 342 LFCCRSLEDKARWLAAFQQERALVEQDREDGLE--FAPAAKELARMSA---ARCHSSRPP 396
                         A F  E   +++ R+  L+         LAR           + P 
Sbjct: 596 --------SVNPNFARFDHEVERLDESRKLELDGYLTKPTTRLARYPLLLEEVLKFTDP- 646

Query: 397 TDHPDYVKITEALEAMRDVAMLINERKRRMES-LEKLAAWQQRVEGWEGEDLIE--TSSQ 453
            D+PD   I + ++ +R+    +N    + E+  +     QQ +   E  +L       +
Sbjct: 647 -DNPDTEDIPKVIDMLREFLSRLNFESGKAENRGDLFHLNQQLLFKPEYVNLGLNDEYRK 705

Query: 454 LIHQGEVIRV-----TSGMWTNTITLFLFDHQLVYCK-RDILKRNTH 494
           +I +G V++      T G     I  FL D+ L++CK + + K   H
Sbjct: 706 IIFKG-VLKRKAKSKTDGSLRGDIQFFLLDNMLLFCKAKAVNKWRQH 751

Length = 1175

>gnl|CDD|212918 cd11985, SH3_Stac2_C, C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 2 (Stac2)

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
           A++  +  E  +L  + GD + V+D  + DWW G  G+  G+FP+ FV+
Sbjct: 4   ALYKFLPQENNDLPLQPGDRVMVVDDSNEDWWKGKSGDRVGFFPANFVQ 52

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac2 contains a single SH3 domain at the C-terminus unlike Stac1 and Stac3, which contain two C-terminal SH3 domains. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 154 EELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
           +EL    GD+I V    +  WW GT    +GWFPS +VR
Sbjct: 16  DELSVCKGDIIYVTRVEEGGWWEGTLNGKTGWFPSNYVR 54

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A AV+D  A  ++EL F+ GD + +L  +D++W+ G      G FP ++V
Sbjct: 3   ARAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYV 52

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 2/40 (5%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGE 48
          A++D  A E  EL F+AG++I VLD  D +WW G+  RGE
Sbjct: 5  ALYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGSNHRGE 44

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212890 cd11957, SH3_RUSC2, Src homology 3 domain of RUN and SH3 domain-containing protein 2

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           +A+  H+A E  +L F  GD+++VL   D DW   + G  SG  P A+V
Sbjct: 3   KALCHHIATEPGQLSFNKGDILQVLSRADGDWLRCSLGPDSGLVPIAYV 51

RUSC2, also called Iporin or Interacting protein of Rab1, is expressed ubiquitously with highest amounts in the brain and testis. It interacts with the small GTPase Rab1 and the Golgi matrix protein GM130, and may function in linking GTPases to certain intracellular signaling pathways. RUSC proteins are adaptor proteins consisting of RUN, leucine zipper, and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV 191
           A+A +D  A +  EL  + GDV+++ +   +  WW  RGE +   GWFPS +V
Sbjct: 2   AKARYDFCARDMRELSLKEGDVVKIYNKKGQQGWW--RGEINGRIGWFPSTYV 52

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212744 cd11810, SH3_RUSC1_like, Src homology 3 domain of RUN and SH3 domain-containing proteins 1 and 2

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAF 190
           A+  HVA ++ +L FR GD++ V+  +D DW   TRG   G  P ++
Sbjct: 4   ALCHHVATDSGQLSFRKGDILRVIARVDDDWLLCTRGSTKGLVPLSY 50

RUSC1 and RUSC2, that were originally characterized in silico. They are adaptor proteins consisting of RUN, leucine zipper, and SH3 domains. RUSC1, also called NESCA (New molecule containing SH3 at the carboxy-terminus), is highly expressed in the brain and is translocated to the nuclear membrane from the cytoplasm upon stimulation with neurotrophin. It plays a role in facilitating neurotrophin-dependent neurite outgrowth. It also interacts with NEMO (or IKKgamma) and may function in NEMO-mediated activation of NF-kB. RUSC2, also called Iporin, is expressed ubiquitously with highest amounts in the brain and testis. It interacts with the small GTPase Rab1 and the Golgi matrix protein GM130, and may function in linking GTPases to certain intracellular signaling pathways. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 155 ELGFRAGDVIEVLDTLDR--DWWWGTRGEASGWFPSAFV 191
           +L F+AGD I VL   D   DWW G      G FP+ +V
Sbjct: 15  DLSFQAGDRITVLTRTDSQFDWWEGRLRGRVGIFPANYV 53

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A++D+ A + +EL F+ GD+I V    D  W+ G     +G FP  +V
Sbjct: 4   ALYDYTADKDDELSFQEGDIIYVTKKNDDGWYEGVLNGVTGLFPGNYV 51

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR---GEASGWFPSAFVR 192
            + V  + A + +EL    GDV+ VL  +   W+ G R   GE  GWFPS++  
Sbjct: 2   VQCVHAYTAQQPDELTLEEGDVVNVLRKMPDGWYEGERLRDGE-RGWFPSSYTE 54

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212980 cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 domain of NADPH oxidase activator 1

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A  D+ A   E+L F  GD I++L  ++++W  G      G FP  F 
Sbjct: 4   AQHDYSAQGPEDLEFSQGDTIDILSEVNQEWLEGHCDGRIGIFPKCFA 51

Noxa1 is a homolog of p67phox and is a cytosolic subunit of the nonphagocytic NADPH oxidase complex Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Noxa1 is co-expressed with Nox1 in colon, stomach, uterus, prostate, and vascular smooth muscle cells, consistent with its regulatory role. It does not interact with p40phox, unlike p67phox, making Nox1 activity independent of p40phox, unlike Nox2. Noxa1 contains TPR, PB1, and C-terminal SH3 domains, but lacks the central SH3 domain that is present in p67phox. The TPR domain binds activated GTP-bound Rac. The C-terminal SH3 domain binds the polyproline motif found at the C-terminus of Noxo1, a homolog of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212817 cd11884, SH3_MYO15, Src Homology 3 domain of Myosin XV

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLD---TLDRDWWWGTRGEASGWFPSAFV 191
           AV  ++  +   L F  GDVI++L     LD  W +GT    SG FP  +V
Sbjct: 4   AVRAYITRDQTLLSFHKGDVIKLLPKEGPLDPGWLFGTLDGRSGAFPKEYV 54

This subfamily is composed of proteins with similarity to Myosin XVa. Myosin XVa is an unconventional myosin that is critical for the normal growth of mechanosensory stereocilia of inner ear hair cells. Mutations in the myosin XVa gene are associated with nonsyndromic hearing loss. Myosin XVa contains a unique N-terminal extension followed by a motor domain, light chain-binding IQ motifs, and a tail consisting of a pair of MyTH4-FERM tandems separated by a SH3 domain, and a PDZ domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 56

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 143 EAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFV 191
             ++D+  +  +EL  + GDVIEV+  +T D  WW G      G+FP  FV
Sbjct: 3   RVLFDYNPVAPDELALKKGDVIEVISKETEDEGWWEGELNGRRGFFPDNFV 53

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212746 cd11812, SH3_AHI-1, Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)

 Score = 40.6 bits (95), Expect = 5e-05
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA-SGWFPSAFV 191
           A++D+ A  ++EL    GD+I VL   + +WW+G+      G+FP+ +V
Sbjct: 4   ALYDYTANRSDELTIHRGDIIRVLYKDNDNWWFGSLVNGQQGYFPANYV 52

AHI-1, also called Jouberin, is expressed in high levels in the brain, gonad tissues, and skeletal muscle. It is an adaptor protein that interacts with the small GTPase Rab8a and regulates it distribution and function, affecting cilium formation and vesicle transport. Mutations in the AHI-1 gene can cause Joubert syndrome, a disorder characterized by brainstem malformations, cerebellar aplasia/hypoplasia, and retinal dystrophy. AHI-1 variation is also associated with susceptibility to schizophrenia and type 2 diabetes mellitus progression. AHI-1 contains WD40 and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212887 cd11954, SH3_ASPP1, Src Homology 3 domain of Apoptosis Stimulating of p53 protein 1

 Score = 40.4 bits (94), Expect = 6e-05
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 8  LAEAVWDHVAMEAEELGFRAGDVIEVL---DTLDRDWWWGTRGE 48
          +  A+WD+ A  A+EL F+ GD I +L   D  + +WWW    +
Sbjct: 2  MVYALWDYEAQNADELSFQEGDAITILRRKDDSETEWWWARLND 45

ASPP1, like ASPP2, activates the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73). In addition, it functions in the cytoplasm to regulate the nuclear localization of the transcriptional cofactors YAP and TAZ by inihibiting their phosphorylation; YAP and TAZ are important regulators of cell expansion, differentiation, migration, and invasion. ASPP1 is downregulated in breast tumors expressing wild-type p53. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of ASPP1 contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212752 cd11818, SH3_Eve1_5, Fifth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 40.2 bits (94), Expect = 6e-05
 Identities = 19/49 (38%), Positives = 28/49 (57%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAF 190
           A A++D      +EL F+AGD+I  L+++D +W  G     SG FP  F
Sbjct: 2   ARALYDFTGENEDELSFKAGDIITELESIDEEWMSGELRGKSGIFPKNF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212860 cd11927, SH3_SH3RF1_1, First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 40.3 bits (94), Expect = 6e-05
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           A+A++++   E  +L F  GD+I +   +D +W+ G      G+FP+ FV++
Sbjct: 3   AKALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVNGIHGFFPTNFVQI 54

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
             A++D       ELGF+ GD+I + + +D +W+ G     SG+FP  +V
Sbjct: 3   CRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMVNGQSGFFPVNYV 52

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212934 cd12001, SH3_BCAR1, Src homology 3 domain of the CAS (Crk-Associated Substrate) scaffolding protein family member, Breast Cancer Anti-estrogen Resistance 1

 Score = 40.8 bits (95), Expect = 6e-05
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 2/39 (5%)

Query: 7  VLAEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWW 43
          VLA+A++D+VA   +EL FR GD++ VL  DT   D WW
Sbjct: 3  VLAKALYDNVAESPDELSFRKGDIMTVLERDTQGLDGWW 41

BCAR1, also called p130cas or CASS1, is the founding member of the CAS family of scaffolding proteins and was originally identified through its ability to associate with Crk. The name BCAR1 was designated because the human gene was identified in a screen for genes that promote resistance to tamoxifen. It is widely expressed and its deletion is lethal in mice. It plays a role in regulating cell motility, survival, proliferation, transformation, cancer progression, and bacterial pathogenesis. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 68

>gnl|CDD|212934 cd12001, SH3_BCAR1, Src homology 3 domain of the CAS (Crk-Associated Substrate) scaffolding protein family member, Breast Cancer Anti-estrogen Resistance 1

 Score = 40.8 bits (95), Expect = 6e-05
 Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 2/39 (5%)

Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWW 176
           VLA+A++D+VA   +EL FR GD++ VL  DT   D WW
Sbjct: 3   VLAKALYDNVAESPDELSFRKGDIMTVLERDTQGLDGWW 41

BCAR1, also called p130cas or CASS1, is the founding member of the CAS family of scaffolding proteins and was originally identified through its ability to associate with Crk. The name BCAR1 was designated because the human gene was identified in a screen for genes that promote resistance to tamoxifen. It is widely expressed and its deletion is lethal in mice. It plays a role in regulating cell motility, survival, proliferation, transformation, cancer progression, and bacterial pathogenesis. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 68

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG---TRGEA--SGWFPSAFVRL 193
           +A+ +    A    +L    G ++ V       WW G    RG+    GWFP+ +V+L
Sbjct: 1   IAQVIAPFTATAENQLSLAVGQLVLVRKKSPSGWWEGELQARGKKRQIGWFPANYVKL 58

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212948 cd12015, SH3_Tks_1, First Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 14/47 (29%), Positives = 27/47 (57%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAF 190
            V D+   +  E+  RAGDV++V++  +  WW+ +  +  GW P+ +
Sbjct: 4   VVADYKKQQPNEISLRAGDVVDVIEKNENGWWFVSLEDEQGWVPATY 50

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the first SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 39.9 bits (94), Expect = 7e-05
 Identities = 18/50 (36%), Positives = 25/50 (50%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A   +++ A   +EL  R GD + VL+     WW G      GWFPS +V
Sbjct: 2   AVVKFNYEAQREDELSLRKGDRVLVLEKSSDGWWRGECNGQVGWFPSNYV 51

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212767 cd11833, SH3_Stac_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing (Stac) proteins

 Score = 40.2 bits (94), Expect = 8e-05
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA 49
          A++     E E+L  R GD I +LD  + DWW G   + 
Sbjct: 4  ALYKFKPQENEDLEMRPGDKITLLDDSNEDWWKGKIEDR 42

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. This model represents the first C-terminal SH3 domain of Stac1 and Stac3, and the single C-terminal SH3 domain of Stac2. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 39.9 bits (93), Expect = 8e-05
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          A++D  A E  EL F+AGD+I +LD  D +WW G
Sbjct: 5  AIYDFEAAEDNELTFKAGDIITILDDSDPNWWKG 38

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A+A++D+ A E  E+ F  GD+I  ++ +D  WW G 
Sbjct: 2  AKALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGV 38

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212957 cd12024, SH3_NoxO1_2, Second or C-terminal Src homology 3 domain of NADPH oxidase (Nox) Organizing protein 1

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 148 HVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           + A + +EL   AG V+EVL   D  WW       +G+ PS +++ 
Sbjct: 8   YEAQKEDELSVPAGVVVEVLQKSDNGWWLIRYNGRAGYVPSMYLQP 53

Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1 is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. NoxO1 contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), and a C-terminal proline-rich region (PRR). This model characterizes the second SH3 domain (or C-SH3) of NoxO1. The tandem SH3 domains of NoxO1 interact with the PRR of p22phox, which also complexes with Nox1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212740 cd11806, SH3_PRMT2, Src homology 3 domain of Protein arginine N-methyltransferase 2

 Score = 39.7 bits (93), Expect = 9e-05
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
          A+ D VA +  +L F +GD + VL     DWWW    
Sbjct: 4  AIADFVATDDSQLSFESGDKLLVLRKPSVDWWWAEHN 40

PRMT2, also called HRMT1L1, belongs to the arginine methyltransferase protein family. It functions as a coactivator to both estrogen receptor alpha (ER-alpha) and androgen receptor (AR), presumably through arginine methylation. The ER-alpha transcription factor is involved in cell proliferation, differentiation, morphogenesis, and apoptosis, and is also implicated in the development and progression of breast cancer. PRMT2 and its variants are upregulated in breast cancer cells and may be involved in modulating the ER-alpha signaling pathway during formation of breast cancer. PRMT2 also plays a role in regulating the function of E2F transcription factors, which are critical cell cycle regulators, by binding to the retinoblastoma gene product (RB). It contains an N-terminal SH3 domain and an AdoMet binding domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212955 cd12022, SH3_p47phox_2, Second or C-terminal Src homology 3 domain of the p47phox subunit of NADPH oxidase, also called Neutrophil Cytosolic Factor 1

 Score = 39.8 bits (93), Expect = 9e-05
 Identities = 17/45 (37%), Positives = 27/45 (60%)

Query: 147 DHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
            + A+E +EL    G+ IEV+  L   WW   +GE +G+FPS ++
Sbjct: 7   AYTAVEEDELTLLEGEAIEVIHKLLDGWWVVRKGEVTGYFPSMYL 51

p47phox, or NCF1, is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), a polybasic/autoinhibitory region, and a C-terminal proline-rich region (PRR). This model characterizes the second SH3 domain (or C-SH3) of p47phox. In its inactive state, the tandem SH3 domains interact intramolecularly with the autoinhibitory region; upon activation, the tandem SH3 domains are exposed through a conformational change, resulting in their binding to the PRR of p22phox and the activation of NADPH oxidase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212885 cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of Inhibitor of ASPP protein (iASPP)

 Score = 39.9 bits (93), Expect = 9e-05
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRL 193
           A+WD+ A   +EL F+ GD++ VL  D    DWWW +     G+ P  +  L
Sbjct: 5   ALWDYSAEFPDELSFKEGDMVTVLRKDGEGTDWWWASLCGREGYVPRNYFGL 56

iASPP, also called RelA-associated inhibitor (RAI), is an oncoprotein that inhibits the apoptotic transactivation potential of p53. It is upregulated in human breast cancers expressing wild-type p53, in acute leukemias regardless of the p53 mutation status, as well as in ovarian cancer where it is associated with poor patient outcome and chemoresistance. iASPP is also a binding partner and negative regulator of p65RelA, which promotes cell proliferation and inhibits apoptosis; p65RelA has the opposite effect on cell growth compared to the p53 family. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of iASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG---TRGEASGWFPSAF 190
           A++D  A   +EL F  G++I V    D +WW G         G FP +F
Sbjct: 4   ALYDCQADNDDELTFSEGEIIVVTGEEDDEWWEGHIEGDPSRRGVFPVSF 53

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 16/50 (32%), Positives = 29/50 (58%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A A++   A  A+EL  + GD+I +   +D++W+ G      G FP+++V
Sbjct: 2   ARALYPFKAQSAKELSLKKGDIIYIRRQIDKNWYEGEHNGRVGIFPASYV 51

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW 43
           A+ D+ A   +E+  + G+V+EVL+  D  WW+
Sbjct: 3  VAIADYEAQGDDEISLQEGEVVEVLEKNDSGWWY 36

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVL----DTLDRDWWWGTRGEASGWFPSAFV 191
           L  A++D+ A   EEL F  G +I +L    + +D  WW G      G FPS  V
Sbjct: 1   LVRALYDYEAQSDEELSFPEGAIIRILRKDDNGVDDGWWEGEFNGRVGVFPSLVV 55

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           A A++D+ A + +E+ F   D+I  ++ +D  WW G      G FP+ +V L
Sbjct: 2   AVALYDYQAADDDEISFDPDDIITNIEMIDEGWWRGVCRGKYGLFPANYVEL 53

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212922 cd11989, SH3_Intersectin1_2, Second Src homology 3 domain (or SH3B) of Intersectin-1

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           A+A++   A +   L F   DVI VL+  D  WW+G      GWFP ++V+L
Sbjct: 2   AQALYPWRAKKDNHLNFNKNDVITVLEQQDM-WWFGEVQGQKGWFPKSYVKL 52

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212891 cd11958, SH3_RUSC1, Src homology 3 domain of RUN and SH3 domain-containing protein 1

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFP 187
           A+ DH   E  +L FR G+ ++VL T+D DW    RG+  G  P
Sbjct: 4   ALCDHAGSE-SQLSFRKGEELQVLGTVDEDWIRCRRGDREGLVP 46

RUSC1, also called NESCA (New molecule containing SH3 at the carboxy-terminus), is highly expressed in the brain and is translocated to the nuclear membrane from the cytoplasm upon stimulation with neurotrophin. It plays a role in facilitating neurotrophin-dependent neurite outgrowth. It also interacts with NEMO (or IKKgamma) and may function in NEMO-mediated activation of NF-kB. RUSC proteins are adaptor proteins consisting of RUN, leucine zipper, and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVL--DTL---DRDWWWGTRGEASGWFPSAFVR 192
           AV+D+ A   +EL  R GD +EVL  D+    D  WW G   +  G FPS +V 
Sbjct: 4   AVFDYEASAEDELTLRRGDRVEVLSKDSAVSGDEGWWTGKINDRVGIFPSNYVT 57

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          A++D+ A   +EL F  G +I VL+  D DWW G
Sbjct: 5  AMYDYTANNEDELSFSKGQLINVLNKDDPDWWQG 38

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEASGWFPSAFV 191
           A A ++  A +  EL  R GDV+ +   +  D+ WW G      GWFPS +V
Sbjct: 3   AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYV 54

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212766 cd11832, SH3_Shank, Src homology 3 domain of SH3 and multiple ankyrin repeat domains (Shank) proteins

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPS 188
           AV  +   E  E+    GD ++VL   +  +W G+    +GWFPS
Sbjct: 4   AVKSYSPQEEGEISLHKGDRVKVLSIGEGGFWEGSVRGRTGWFPS 48

Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. They bind a variety of membrane and cytosolic proteins, and exist in alternatively spliced isoforms. They are highly enriched in postsynaptic density (PSD) where they interact with the cytoskeleton and with postsynaptic membrane receptors including NMDA and glutamate receptors. They are crucial in the construction and organization of the PSD and dendritic spines of excitatory synapses. There are three members of this family (Shank1, Shank2, Shank3) which show distinct and cell-type specific patterns of expression. Shank1 is brain-specific; Shank2 is found in neurons, glia, endocrine cells, liver, and kidney; Shank3 is widely expressed. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212781 cd11847, SH3_Brk, Src homology 3 domain of Brk (Breast tumor kinase) Protein Tyrosine Kinase (PTK), also called PTK6

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEAFEHLSQIIINH 60
          A+WD  A   EEL F+AGD   + +    DWW   +   A   ++Q  + +
Sbjct: 4  ALWDFKARGDEELSFQAGDQFRIAER-SGDWWTALKLDRAGGVVAQGFVPN 53

Brk is a cytoplasmic (or non-receptor) PTK with limited homology to Src kinases. It has been found to be overexpressed in a majority of breast tumors. It plays roles in normal cell differentiation, proliferation, survival, migration, and cell cycle progression. Brk substrates include RNA-binding proteins (SLM-1/2, Sam68), transcription factors (STAT3/5), and signaling molecules (Akt, paxillin, IRS-4). Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation site. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212781 cd11847, SH3_Brk, Src homology 3 domain of Brk (Breast tumor kinase) Protein Tyrosine Kinase (PTK), also called PTK6

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEASGWFPSAFV 191
           A+WD  A   EEL F+AGD   + +    DWW   +   A G     FV
Sbjct: 4   ALWDFKARGDEELSFQAGDQFRIAER-SGDWWTALKLDRAGGVVAQGFV 51

Brk is a cytoplasmic (or non-receptor) PTK with limited homology to Src kinases. It has been found to be overexpressed in a majority of breast tumors. It plays roles in normal cell differentiation, proliferation, survival, migration, and cell cycle progression. Brk substrates include RNA-binding proteins (SLM-1/2, Sam68), transcription factors (STAT3/5), and signaling molecules (Akt, paxillin, IRS-4). Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation site. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212809 cd11876, SH3_MLK, Src Homology 3 domain of Mixed Lineage Kinases

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTL-----DRDWWWGTRGEASGWFPSAFV 191
           A++D+ A   +EL  R G  +EVL        D  WW G  G+  G FPS +V
Sbjct: 4   ALFDYDARGEDELTLRRGQPVEVLSKDAAVSGDEGWWTGKIGDKVGIFPSNYV 56

MLKs are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Mammals have four MLKs (MLK1-4), mostly conserved in vertebrates, which contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212932 cd11999, SH3_PACSIN_like, Src homology 3 domain of an unknown subfamily of proteins with similarity to Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 140 VLAEAVWDHVAMEAEELGFRAGD-VIEVLDTLDRDWWWG-TRGEASGWFPSAFV 191
           V   AV+D+   E +EL F+AG+ +++V D  ++ W  G T G A G +P+ +V
Sbjct: 2   VRVRAVYDYTGQEPDELSFKAGEELLKVEDEDEQGWCKGVTDGGAVGLYPANYV 55

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212868 cd11935, SH3_Nebulette_C, C-terminal Src Homology 3 domain of Nebulette and LIM-nebulette (or Lasp2)

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 193
           A++D+ A + +E+ FR GD I  +  +D  W +GT  R   +G  P+ ++  
Sbjct: 5   AMYDYSAQDEDEVSFRDGDYIVNVQPIDEGWMYGTVQRTGRTGMLPANYIEF 56

Nebulette is a cardiac-specific protein that localizes to the Z-disc. It interacts with tropomyosin and is important in stabilizing actin thin filaments in cardiac muscles. Polymorphisms in the nebulette gene are associated with dilated cardiomyopathy, with some mutations resulting in severe heart failure. Nebulette is a 107kD protein that contains an N-terminal acidic region, multiple nebulin repeats, and a C-terminal SH3 domain. LIM-nebulette, also called Lasp2 (LIM and SH3 domain protein 2), is an alternatively spliced variant of nebulette. Although it shares a gene with nebulette, Lasp2 is not transcribed from a muscle-specific promoter, giving rise to its multiple tissue expression pattern with highest amounts in the brain. It can crosslink actin filaments and it affects cell spreading. Lasp2 is a 34kD protein containing an N-terminal LIM domain, three nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212866 cd11933, SH3_Nebulin_C, C-terminal Src Homology 3 domain of Nebulin

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFV 191
            A++D+ A + +E+ F+ GD I  + T+D  W +GT  R   +G  P+ +V
Sbjct: 5   RAMYDYRAADDDEVSFKDGDTIVNVQTIDEGWMYGTVQRTGKTGMLPANYV 55

Nebulin is a giant filamentous protein (600-900 kD) that is expressed abundantly in skeletal muscle. It binds to actin thin filaments and regulates its assembly and function. Nebulin was thought to be part of a molecular ruler complex that is critical in determining the lengths of actin thin filaments in skeletal muscle since its length, which varies due to alternative splicing, correlates with the length of thin filaments in various muscle types. Recent studies indicate that nebulin regulates thin filament length by stabilizing the filaments and preventing depolymerization. Mutations in nebulin can cause nemaline myopathy, characterized by muscle weakness which can be severe and can lead to neonatal lethality. Nebulin contains an N-terminal LIM domain, many nebulin repeats/super repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 150 AMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRL 193
           A   +EL  + GD++ ++  D +D  WW G      G FP  FV+L
Sbjct: 10  AQNEDELTIKEGDIVTLISKDCIDAGWWEGELNGRRGVFPDNFVKL 55

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212708 cd11774, SH3_Sla1p_2, Second Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAFV 191
           A+A++D+     EEL F  GD ++V D  D DW   G  G   G+ P+ ++
Sbjct: 2   AKALYDYDKQTEEELSFNEGDTLDVYDDSDSDWILVGFNGTQFGFVPANYI 52

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
          A++D+ A   +EL F  GD++ + D  D +WW  T G
Sbjct: 4  ALYDYEAQHPDELSFEEGDLLYISDKSDPNWWKATCG 40

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212778 cd11844, SH3_CAS, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding proteins

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 8  LAEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWW 43
          LA A++D+VA   +EL FR GD++ VL  +T   + WW
Sbjct: 1  LARALYDNVAESPDELAFRRGDILTVLEQNTAGLEGWW 38

CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes including migration, chemotaxis, apoptosis, differentiation, and progenitor cell function. They mediate the signaling of integrins at focal adhesions where they localize, and thus, regulate cell invasion and survival. Over-expression of these proteins is implicated in poor prognosis, increased metastasis, and resistance to chemotherapeutics in many cancers such as breast, lung, melanoma, and glioblastoma. CAS proteins have also been linked to the pathogenesis of inflammatory disorders, Alzheimer's, Parkinson's, and developmental defects. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. Vertebrates contain four CAS proteins: BCAR1 (or p130Cas), NEDD9 (or HEF1), EFS (or SIN), and CASS4 (or HEPL). The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212778 cd11844, SH3_CAS, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding proteins

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWW 176
           LA A++D+VA   +EL FR GD++ VL  +T   + WW
Sbjct: 1   LARALYDNVAESPDELAFRRGDILTVLEQNTAGLEGWW 38

CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes including migration, chemotaxis, apoptosis, differentiation, and progenitor cell function. They mediate the signaling of integrins at focal adhesions where they localize, and thus, regulate cell invasion and survival. Over-expression of these proteins is implicated in poor prognosis, increased metastasis, and resistance to chemotherapeutics in many cancers such as breast, lung, melanoma, and glioblastoma. CAS proteins have also been linked to the pathogenesis of inflammatory disorders, Alzheimer's, Parkinson's, and developmental defects. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. Vertebrates contain four CAS proteins: BCAR1 (or p130Cas), NEDD9 (or HEF1), EFS (or SIN), and CASS4 (or HEPL). The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212713 cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain of Insulin Receptor tyrosine kinase Substrate p53, Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2 (BAIAP2)-Like proteins, and similar proteins

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRD-WWWGT--RGEASGWFPSAFVR 192
           +A++ H A    +L F  GDVI +L    RD W +G   R    GWFP A+  
Sbjct: 4   KALYPHAAGGETQLSFEEGDVITLLGPEPRDGWHYGENERSGRRGWFPIAYTE 56

Proteins in this family include IRSp53, BAIAP2L1, BAIAP2L2, and similar proteins. They all contain an Inverse-Bin/Amphiphysin/Rvs (I-BAR) or IMD domain in addition to the SH3 domain. IRSp53, also known as BAIAP2, is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. BAIAP2L1, also called IRTKS (Insulin Receptor Tyrosine Kinase Substrate), serves as a substrate for the insulin receptor and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. IRSp53 and IRTKS also mediate the recruitment of effector proteins Tir and EspFu, which regulate host cell actin reorganization, to bacterial attachment sites. BAIAP2L2 co-localizes with clathrin plaques but its function has not been determined. The SH3 domains of IRSp53 and IRTKS have been shown to bind the proline-rich C-terminus of EspFu. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 15/37 (40%), Positives = 22/37 (59%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A+A++D+ A E  EL F   D I  ++ +D DWW G 
Sbjct: 2  AKALYDYDAAEDNELSFFENDKIINIEFVDDDWWLGE 38

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212741 cd11807, SH3_ASPP, Src homology 3 domain of Apoptosis Stimulating of p53 proteins (ASPP)

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVL---DTLDRDWWWGTRGE 48
          A++D+ A   +EL FR GD + VL   D  + +WWW    +
Sbjct: 5  ALFDYEAENGDELSFREGDELTVLRKGDDDETEWWWARLND 45

The ASPP family of proteins bind to important regulators of apoptosis (p53, Bcl-2, and RelA) and cell growth (APCL, PP1). They share similarity at their C-termini, where they harbor a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain. Vertebrates contain three members of the family: ASPP1, ASPP2, and iASPP. ASPP1 and ASPP2 activate the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73), while iASPP is an oncoprotein that specifically inhibits p53-induced apoptosis. The expression of ASPP proteins is altered in tumors; ASPP1 and ASPP2 are downregulated whereas iASPP is upregulated is some cancer types. ASPP proteins also bind and regulate protein phosphatase 1 (PP1), and this binding is competitive with p53 binding. The SH3 domain and the ANK repeats of ASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212744 cd11810, SH3_RUSC1_like, Src homology 3 domain of RUN and SH3 domain-containing proteins 1 and 2

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
          A+  HVA ++ +L FR GD++ V+  +D DW   TRG
Sbjct: 4  ALCHHVATDSGQLSFRKGDILRVIARVDDDWLLCTRG 40

RUSC1 and RUSC2, that were originally characterized in silico. They are adaptor proteins consisting of RUN, leucine zipper, and SH3 domains. RUSC1, also called NESCA (New molecule containing SH3 at the carboxy-terminus), is highly expressed in the brain and is translocated to the nuclear membrane from the cytoplasm upon stimulation with neurotrophin. It plays a role in facilitating neurotrophin-dependent neurite outgrowth. It also interacts with NEMO (or IKKgamma) and may function in NEMO-mediated activation of NF-kB. RUSC2, also called Iporin, is expressed ubiquitously with highest amounts in the brain and testis. It interacts with the small GTPase Rab1 and the Golgi matrix protein GM130, and may function in linking GTPases to certain intracellular signaling pathways. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212885 cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of Inhibitor of ASPP protein (iASPP)

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGT 45
          A+WD+ A   +EL F+ GD++ VL  D    DWWW +
Sbjct: 5  ALWDYSAEFPDELSFKEGDMVTVLRKDGEGTDWWWAS 41

iASPP, also called RelA-associated inhibitor (RAI), is an oncoprotein that inhibits the apoptotic transactivation potential of p53. It is upregulated in human breast cancers expressing wild-type p53, in acute leukemias regardless of the p53 mutation status, as well as in ovarian cancer where it is associated with poor patient outcome and chemoresistance. iASPP is also a binding partner and negative regulator of p65RelA, which promotes cell proliferation and inhibits apoptosis; p65RelA has the opposite effect on cell growth compared to the p53 family. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of iASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212923 cd11990, SH3_Intersectin2_2, Second Src homology 3 domain (or SH3B) of Intersectin-2

 Score = 38.1 bits (88), Expect = 4e-04
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
            A+A+    A +   L F   D+I VL+    +WW+G      GWFP ++V+L
Sbjct: 1   KAQALCSWTAKKDNHLNFSKNDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKL 52

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV 191
           A+A +D  A +  EL  + GD+I++L+   +  WW  RGE     GWFP+ +V
Sbjct: 2   AKARYDFCARDRSELSLKEGDIIKILNKKGQQGWW--RGEIYGRVGWFPANYV 52

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDR--DWWWGTRGEASGWFPSAFV 191
           A++   A   +E+ F+ GD+I+V ++      W  G     +GWFP+ +V
Sbjct: 4   ALYAFEARNPDEISFQPGDIIQVDESQVAEPGWLAGELKGKTGWFPANYV 53

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 142 AEAVWD-HVAMEAEELGFRAGDVIEVL---DTLDRD--WWWG-TRGEASGWFPSAFV 191
             A++D        EL  + GD++ VL   D L RD  WW G TR    GWFPS +V
Sbjct: 2   CRALYDFTPENPEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRTRDGRIGWFPSNYV 58

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212952 cd12019, SH3_Tks5_4, Fourth Src homology 3 domain of Tyrosine kinase substrate with five SH3 domains

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 155 ELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           E+ F AG  +EVL+  +  WW+   GE  GW PS ++ L
Sbjct: 15  EISFPAGVEVEVLEKQESGWWYVRFGELEGWAPSHYLEL 53

Tks5, also called SH3 and PX domain-containing protein 2A (SH3PXD2A) or Five SH (FISH), is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. It binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. Tks5 contains an N-terminal Phox homology (PX) domain and five SH3 domains. This model characterizes the fourth SH3 domain of Tks5. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing Adaptor Molecule 2

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          A++D  A+E  EL F+ G++I VLD  D +WW G
Sbjct: 6  ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKG 39

STAM2, also called EAST (Epidermal growth factor receptor-associated protein with SH3 and TAM domain) or Hbp (Hrs binding protein), is part of the endosomal sorting complex required for transport (ESCRT-0). It plays a role in sorting mono-ubiquinated endosomal cargo for trafficking to the lysosome for degradation. It is also involved in the regulation of exocytosis. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212723 cd11789, SH3_Nebulin_family_C, C-terminal Src Homology 3 domain of the Nebulin family of proteins

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 193
           A++D+ A + +E+ F+ GDVI  ++ +D  W  GT  R   SG  P+ +V L
Sbjct: 4   AMYDYAAADDDEVSFQEGDVIINVEIIDDGWMEGTVQRTGQSGMLPANYVEL 55

Nebulin family proteins contain multiple nebulin repeats, and may contain an N-terminal LIM domain and/or a C-terminal SH3 domain. They have molecular weights ranging from 34 to 900 kD, depending on the number of nebulin repeats, and they all bind actin. They are involved in the regulation of actin filament architecture and function as stabilizers and scaffolds for cytoskeletal structures with which they associate, such as long actin filaments or focal adhesions. Nebulin family proteins that contain a C-terminal SH3 domain include the giant filamentous protein nebulin, nebulette, Lasp1, and Lasp2. Lasp2, also called LIM-nebulette, is an alternatively spliced variant of nebulette. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212743 cd11809, SH3_srGAP, Src homology 3 domain of Slit-Robo GTPase Activating Proteins

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
            A A +D+      EL F+ GD + +   +  DWW G      G  P  ++ L
Sbjct: 1   EATAQFDYTGRSERELSFKKGDSLTLYRQVSDDWWRGQLNGQDGLVPHKYITL 53

Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs (srGAP1-3), all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. A fourth member has also been reported (srGAP4, also called ARHGAP4). srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212936 cd12003, SH3_EFS, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member, Embryonal Fyn-associated Substrate

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 7  VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDR--DWWW 43
           LA+A++D+ A   EEL FR GDV+ VL         WW
Sbjct: 1  QLAKALYDNAAESPEELSFRRGDVLMVLKREHGSLPGWW 39

EFS is also called HEFS, CASS3 (Cas scaffolding protein family member 3) or SIN (Src-interacting protein). It was identified based on interactions with the Src kinases, Fyn and Yes. It plays a role in thymocyte development and acts as a negative regulator of T cell proliferation. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212936 cd12003, SH3_EFS, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member, Embryonal Fyn-associated Substrate

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDR--DWWW 176
            LA+A++D+ A   EEL FR GDV+ VL         WW
Sbjct: 1   QLAKALYDNAAESPEELSFRRGDVLMVLKREHGSLPGWW 39

EFS is also called HEFS, CASS3 (Cas scaffolding protein family member 3) or SIN (Src-interacting protein). It was identified based on interactions with the Src kinases, Fyn and Yes. It plays a role in thymocyte development and acts as a negative regulator of T cell proliferation. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212708 cd11774, SH3_Sla1p_2, Second Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDW 41
          A+A++D+     EEL F  GD ++V D  D DW
Sbjct: 2  AKALYDYDKQTEEELSFNEGDTLDVYDDSDSDW 34

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212849 cd11916, SH3_Sorbs1_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 37.7 bits (87), Expect = 7e-04
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 193
           +A++ +     +EL  R GD+++V++  D  W+ GT  R +  G FP  +V+L
Sbjct: 5   QALYSYAPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKL 57

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212802 cd11869, SH3_p40phox, Src Homology 3 domain of the p40phox subunit of NADPH oxidase

 Score = 37.1 bits (86), Expect = 8e-04
 Identities = 18/41 (43%), Positives = 25/41 (60%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA 49
          AEA++D       EL F+AGDVI +L  +++DW  GT   A
Sbjct: 2  AEALFDFTGNSKLELNFKAGDVIFLLSRVNKDWLEGTVRGA 42

p40phox, also called Neutrophil cytosol factor 4 (NCF-4), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. It contains an N-terminal PX domain, a central SH3 domain, and a C-terminal PB1 domain that interacts with p67phox. The SH3 domain of p40phox binds to canonical polyproline and noncanonical motifs at the C-terminus of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
          A++ + A   +EL F+ GD+I VL   D DWW   RGE
Sbjct: 4  ALFPYTAQNEDELSFQKGDIINVLSKDDPDWW---RGE 38

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASG---WFPSAFV 191
           +A A +D  A +  EL    GDV+++   +  + WW  RGE +G   WFPS +V
Sbjct: 2   IAIARYDFCARDMRELSLLKGDVVKIYTKMSTNGWW--RGEVNGRVGWFPSTYV 53

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 37.1 bits (86), Expect = 9e-04
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
           A+  + A   E+LGFR GD I+VL  ++  W  G
Sbjct: 3  VALHRYEAQGPEDLGFREGDTIDVLSEVNEAWLEG 37

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query: 7  VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          + A A++D+     +E+ F   + I  ++ +D  WW GT
Sbjct: 1  ICAVALYDYQGEGDDEISFDPQETITDIEMVDEGWWKGT 39

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
          A A++D+ A +  E+ F  GD+I  ++ +D  WW GT 
Sbjct: 2  ARALYDYQAADDTEISFDPGDIITDIEQIDEGWWRGTG 39

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|241292 cd01261, PH_SOS, Son of Sevenless (SOS) Pleckstrin homology (PH) domain

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 449 ETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKR----NTHVY--KARLNI 502
           +  ++ I +G + +V +G  +    LFLFD  L+ CK +        +   Y  K ++ I
Sbjct: 1   QCCNEFIMEGTLTKVGAGKRSTERHLFLFDGLLLLCKSNQSSTASGQSKPEYRLKEKIFI 60

Query: 503 DTSQIINLPD 512
              +I +L D
Sbjct: 61  RKVEINDLED 70

SOS is a Ras guanine nucleotide exchange factor. SOS is thought to transmit signals from activated receptor tyrosine kinases to the Ras signaling pathway. SOS contains a histone domain, Dbl-homology (DH), a PH domain, Rem domain, Cdc25 domain, and a Grb2 binding domain. The SOS PH domain binds to phosphatidylinositol-4,5-bisphosphate (PIP2) and phosphatidic acid (PA). SOS is dependent on Ras binding to the allosteric site via its histone domain for both a lower level of activity (Ras GDP) and maximal activity (Ras GTP). The DH domain blocks the allosteric Ras binding site in SOS. The PH domain is closely associated with the DH domain and the action of the DH-PH unit gates a reciprocal interaction between Ras and SOS. The C-terminal proline-rich domain of SOS binds to the adapter protein Grb2 which localizes the Sos protein to the plasma membrane and diminishes the negative effect of the C-terminal domain on the guanine nucleotide exchange activity of the CDC25-homology domain of SOS. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 109

>gnl|CDD|212950 cd12017, SH3_Tks_3, Third Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 156 LGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           + F+ G  +EV+D     WW+       GW PS+++
Sbjct: 16  ISFQKGQKVEVIDKNPSGWWYVKIDGKEGWAPSSYI 51

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the third SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212738 cd11804, SH3_GRB2_like_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDT-LDRDWWWGTRGEASGWFPSAFV 191
           A A  D  A   +EL F+ G +++VL+   D +W+        G  P  ++
Sbjct: 2   AVAKHDFKATAEDELSFKKGSILKVLNMEDDPNWYKAELDGKEGLIPKNYI 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The N-terminal SH3 domain of GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212889 cd11956, SH3_srGAP4, Src homology 3 domain of Slit-Robo GTPase Activating Protein 4

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASG 184
            V A A +D+    A+EL F+ GDV+ +      DWW   RGE +G
Sbjct: 1   EVEAVACFDYTGRTAQELSFKRGDVLLLHSKASSDWW---RGEHNG 43

srGAP4, also called ARHGAP4, is highly expressed in hematopoietic cells and may play a role in lymphocyte differentiation. It is able to stimulate the GTPase activity of Rac1, Cdc42, and RhoA. In the nervous system, srGAP4 has been detected in differentiating neurites and may be involved in axon and dendritic growth. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212729 cd11795, SH3_DNMBP_N2, Second N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 147 DHVAMEAEELGFRAGDVIEVLDTLDRDWWWG-TRGEASGWFPSAFVR 192
              + E   L  + GD++E+  T D  W  G +   +SG+FPS+ V+
Sbjct: 7   AFTSQEPGHLNLQRGDLVELTGTTDSGWLQGRSCWGSSGFFPSSCVQ 53

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212828 cd11895, SH3_FCHSD1_2, Second Src Homology 3 domain of FCH and double SH3 domains protein 1

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVL----DTLDRDWWWGTRGEASGWFPSAFV 191
           LA A++ +     EEL F  G +I +L    D +D  +W G  G   G FPS  V
Sbjct: 1   LARALYSYTGQSPEELSFPEGALIRLLPRAQDGVDDGFWRGEFGGRVGVFPSLLV 55

FCHSD1 has a domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. It has only been characterized in silico and its function is unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212728 cd11794, SH3_DNMBP_N1, First N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 17/38 (44%), Positives = 22/38 (57%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
            A++D     +EEL   AGDVIEVL  +D  W  GT+
Sbjct: 2  VRAIFDFCPSVSEELPLFAGDVIEVLKVVDEFWLLGTK 39

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
           ++D+ A   +EL F  G +I VL+  D DWW G
Sbjct: 5  GMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKG 38

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 8  LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
             A++ + A + E+L F+ GDVI VL  ++ DW  G
Sbjct: 1  QVVALFSYEASQPEDLEFQKGDVILVLSKVNEDWLEG 37

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          A A++D      E+L F+ GD I V + LD +W  G
Sbjct: 2  AVALYDFTGETEEDLSFQRGDRILVTEHLDAEWSRG 37

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 14/36 (38%), Positives = 24/36 (66%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          A AV+D  A  ++EL F+ GD + +L  +D++W+ G
Sbjct: 3  ARAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEG 38

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          A++D  A   +EL F  G++I V    D +WW G
Sbjct: 4  ALYDCQADNDDELTFSEGEIIVVTGEEDDEWWEG 37

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212891 cd11958, SH3_RUSC1, Src homology 3 domain of RUN and SH3 domain-containing protein 1

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDW 41
          A+ DH   E  +L FR G+ ++VL T+D DW
Sbjct: 4  ALCDHAGSE-SQLSFRKGEELQVLGTVDEDW 33

RUSC1, also called NESCA (New molecule containing SH3 at the carboxy-terminus), is highly expressed in the brain and is translocated to the nuclear membrane from the cytoplasm upon stimulation with neurotrophin. It plays a role in facilitating neurotrophin-dependent neurite outgrowth. It also interacts with NEMO (or IKKgamma) and may function in NEMO-mediated activation of NF-kB. RUSC proteins are adaptor proteins consisting of RUN, leucine zipper, and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212866 cd11933, SH3_Nebulin_C, C-terminal Src Homology 3 domain of Nebulin

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
           A++D+ A + +E+ F+ GD I  + T+D  W +GT
Sbjct: 5  RAMYDYRAADDDEVSFKDGDTIVNVQTIDEGWMYGT 40

Nebulin is a giant filamentous protein (600-900 kD) that is expressed abundantly in skeletal muscle. It binds to actin thin filaments and regulates its assembly and function. Nebulin was thought to be part of a molecular ruler complex that is critical in determining the lengths of actin thin filaments in skeletal muscle since its length, which varies due to alternative splicing, correlates with the length of thin filaments in various muscle types. Recent studies indicate that nebulin regulates thin filament length by stabilizing the filaments and preventing depolymerization. Mutations in nebulin can cause nemaline myopathy, characterized by muscle weakness which can be severe and can lead to neonatal lethality. Nebulin contains an N-terminal LIM domain, many nebulin repeats/super repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212939 cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn and Yrk Protein Tyrosine Kinases

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG---TRGEASGWFPSAFV 191
           L  A++D+ A   ++L F  G+  ++L++ + DWW     T GE +G+ PS +V
Sbjct: 2   LFVALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE-TGYIPSNYV 54

Fyn and Yrk (Yes-related kinase) are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212798 cd11864, SH3_PEX13_eumet, Src Homology 3 domain of eumetazoan Peroxisomal biogenesis factor 13

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEV----LDTLDRDWWWGTR-GEASGWFPSAFVRL 193
           +A A +D VA   +EL FRAGD + +    L    R W   T  G+  G  P+ +V++
Sbjct: 1   VARAEYDFVAESEDELSFRAGDKLRLAPKELQPRVRGWLLATVDGQKIGLVPANYVKI 58

PEX13 is a peroxin and is required for protein import into the peroxisomal matrix and membrane. It is an integral membrane protein that is essential for the localization of PEX14 and the import of proteins containing the peroxisome matrix targeting signals, PTS1 and PTS2. Mutations of the PEX13 gene in humans lead to a wide range of peroxisome biogenesis disorders (PBDs), the most severe of which is known as Zellweger syndrome (ZS), a severe multisystem disorder characterized by hypotonia, psychomotor retardation, and neuronal migration defects. PEX13 contains two transmembrane regions and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212847 cd11914, SH3_BAIAP2L2, Src Homology 3 domain of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 156 LGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFVR 192
           L F  GD+I VL    R+ W   + E S   GWFP A+V+
Sbjct: 18  LRFNRGDIITVLVPEARNGWLYGKLEGSSRQGWFPEAYVK 57

BAIAP2L2 co-localizes with clathrin plaques but its function has not been determined. It contains an N-terminal IMD or Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212935 cd12002, SH3_NEDD9, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member, Neural precursor cell Expressed, Developmentally Down-regulated 9

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 7/51 (13%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLD--TLDRDWWW-----GTRGEASG 184
           +A A++D+V   AEEL FR GD++ V++  T   + WW     G +G A G
Sbjct: 1   MARALYDNVPECAEELAFRKGDILTVIEQNTGGLEGWWLCSLHGRQGIAPG 51

NEDD9 is also called human enhancer of filamentation 1 (HEF1) or CAS-L (Crk-associated substrate in lymphocyte). It was first described as a gene predominantly expressed in early embryonic brain, and was also isolated from a screen of human proteins that regulate filamentous budding in yeast, and as a tyrosine phosphorylated protein in lymphocytes. It promotes metastasis in different solid tumors. NEDD9 localizes in focal adhesions and associates with FAK and Abl kinase. It also interacts with SMAD3 and the proteasomal machinery which allows its rapid turnover; these interactions are not shared by other CAS proteins. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212935 cd12002, SH3_NEDD9, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member, Neural precursor cell Expressed, Developmentally Down-regulated 9

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 8  LAEAVWDHVAMEAEELGFRAGDVIEVLD--TLDRDWWW 43
          +A A++D+V   AEEL FR GD++ V++  T   + WW
Sbjct: 1  MARALYDNVPECAEELAFRKGDILTVIEQNTGGLEGWW 38

NEDD9 is also called human enhancer of filamentation 1 (HEF1) or CAS-L (Crk-associated substrate in lymphocyte). It was first described as a gene predominantly expressed in early embryonic brain, and was also isolated from a screen of human proteins that regulate filamentous budding in yeast, and as a tyrosine phosphorylated protein in lymphocytes. It promotes metastasis in different solid tumors. NEDD9 localizes in focal adhesions and associates with FAK and Abl kinase. It also interacts with SMAD3 and the proteasomal machinery which allows its rapid turnover; these interactions are not shared by other CAS proteins. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212850 cd11917, SH3_Sorbs2_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVR 192
           +A+++++    +EL  R GDVI+V++  D  W+ GT  R +  G FP  +V+
Sbjct: 8   QALYNYMPRNEDELELREGDVIDVMEKCDDGWFVGTSRRTKFFGTFPGNYVK 59

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212691 cd11757, SH3_SH3BP4, Src Homology 3 domain of SH3 domain-binding protein 4

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
           A+ D+       L F  GD + VLDT   +WW+       G+ PS++V+
Sbjct: 4   AIKDYCPTNFTTLKFSKGDHLYVLDTSGGEWWYAHNTTEMGYIPSSYVQ 52

SH3 domain-binding protein 4 (SH3BP4) is also called transferrin receptor trafficking protein (TTP). SH3BP4 is an endocytic accessory protein that interacts with endocytic proteins including clathrin and dynamin, and regulates the internalization of the transferrin receptor (TfR). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212927 cd11994, SH3_Intersectin2_4, Fourth Src homology 3 domain (or SH3D) of Intersectin-2

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG---TRGEA--SGWFPSAFVRL 193
           +A+    +VA   E+L    G +I +L      WW G    RG+    GWFP++ V+L
Sbjct: 1   IAQVTTAYVASGVEQLSLSPGQLILILKKNSSGWWLGELQARGKKRQKGWFPASHVKL 58

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fourth SH3 domain (or SH3D) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A A ++  A    EL FR GDVI +   +D +W+ G  G   G FP ++V
Sbjct: 2   ARAKYNFNADTGVELSFRKGDVITLTRRVDENWYEGRIGGRQGIFPVSYV 51

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 15/48 (31%), Positives = 26/48 (54%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A++D+   + +EL F+ G +I V+   D  W+ G     +G FP  +V
Sbjct: 7   AIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 54

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212731 cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAF 190
           A++   A+E  EL F  GD I ++ TL+  W  G      G FP  F
Sbjct: 4   ALYRFQALEPNELDFEVGDRIRIIATLEDGWLEGELKGRRGIFPHRF 50

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP bind the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212919 cd11986, SH3_Stac3_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 3 (Stac3)

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
          A++   A+E ++L F  G+ I V+D  + +WW G  GE
Sbjct: 4  ALYRFKALEKDDLDFHPGERITVIDDSNEEWWRGKIGE 41

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          A++ + A + +EL F  GD+IE+L      WW G
Sbjct: 4  ALYAYDAQDTDELSFNEGDIIEILKEDPSGWWTG 37

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212957 cd12024, SH3_NoxO1_2, Second or C-terminal Src homology 3 domain of NADPH oxidase (Nox) Organizing protein 1

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 15 HVAMEAEELGFRAGDVIEVLDTLDRDWW 42
          + A + +EL   AG V+EVL   D  WW
Sbjct: 8  YEAQKEDELSVPAGVVVEVLQKSDNGWW 35

Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1 is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. NoxO1 contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), and a C-terminal proline-rich region (PRR). This model characterizes the second SH3 domain (or C-SH3) of NoxO1. The tandem SH3 domains of NoxO1 interact with the PRR of p22phox, which also complexes with Nox1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|241292 cd01261, PH_SOS, Son of Sevenless (SOS) Pleckstrin homology (PH) domain

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 326 VRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAF 358
           +++A +I   D+  ++    +S E+K  W+AA 
Sbjct: 74  LKNAFEIVPRDEPSYI-LFAKSAEEKNNWMAAL 105

SOS is a Ras guanine nucleotide exchange factor. SOS is thought to transmit signals from activated receptor tyrosine kinases to the Ras signaling pathway. SOS contains a histone domain, Dbl-homology (DH), a PH domain, Rem domain, Cdc25 domain, and a Grb2 binding domain. The SOS PH domain binds to phosphatidylinositol-4,5-bisphosphate (PIP2) and phosphatidic acid (PA). SOS is dependent on Ras binding to the allosteric site via its histone domain for both a lower level of activity (Ras GDP) and maximal activity (Ras GTP). The DH domain blocks the allosteric Ras binding site in SOS. The PH domain is closely associated with the DH domain and the action of the DH-PH unit gates a reciprocal interaction between Ras and SOS. The C-terminal proline-rich domain of SOS binds to the adapter protein Grb2 which localizes the Sos protein to the plasma membrane and diminishes the negative effect of the C-terminal domain on the guanine nucleotide exchange activity of the CDC25-homology domain of SOS. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 109

>gnl|CDD|212925 cd11992, SH3_Intersectin2_3, Third Src homology 3 domain (or SH3C) of Intersectin-2

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
           A++ + + E  +L F  G+ I V    D +WW G+  + +G FPS +VR
Sbjct: 4   ALYPYSSSEPGDLTFNEGEEILVTQK-DGEWWTGSIEDRTGIFPSNYVR 51

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (SH3C) of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|213007 cd12074, SH3_Tks5_1, First Src homology 3 domain of Tyrosine kinase substrate with five SH3 domains

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 12/40 (30%), Positives = 25/40 (62%)

Query: 152 EAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           E  E+  +AG+V++V++  +  WW+ +  E  GW P+ ++
Sbjct: 12  ENSEISLQAGEVVDVIEKNESGWWFVSTAEEQGWVPATYL 51

Tks5, also called SH3 and PX domain-containing protein 2A (SH3PXD2A) or Five SH (FISH), is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. It binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. Tks5 contains an N-terminal Phox homology (PX) domain and five SH3 domains. This model characterizes the first SH3 domain of Tks5. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212899 cd11966, SH3_ASAP2, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing protein 2

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG-TRGEAS--GWFPSAFV 191
           +A+++ VA   +EL F  G++I V    D++WW G   GE +  G FP +FV
Sbjct: 3   KALYNCVADNPDELTFSEGEIIIVDGEEDKEWWIGHIDGEPTRRGAFPVSFV 54

ASAP2 is also called DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. It mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and it binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
              ++D+ A E +EL    GDV+ V++  +  WW   R    G  P  ++
Sbjct: 2   YSVLYDYTAQEDDELSISKGDVVAVIEKGEDGWWTVERNGQKGLVPGTYL 51

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212872 cd11939, SH3_ephexin1, Src homology 3 domain of the Rho guanine nucleotide exchange factor, ephexin-1 (also called NGEF or ARHGEF27)

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFV 191
           + V  +V+ E +EL     DV+ +LD  D  W +G R   +  GWFPS+ V
Sbjct: 3   QCVHPYVSQEPDELSLELADVLNILDKTDDGWIFGERLHDQERGWFPSSVV 53

Ephexin-1, also called NGEF (neuronal GEF) or ARHGEF27, activates RhoA, Tac1, and Cdc42 by exchanging bound GDP for free GTP. It is expressed mainly in the brain in a region associated with movement control. It regulates the stability of postsynaptic acetylcholine receptor (AChR) clusters and thus, plays a critical role in the maturation and neurotransmission of neuromuscular junctions. Ephexin-1 directly interacts with the ephrin receptor EphA4 and their coexpression enhances the ability of ephexin-1 to activate RhoA. It is required for normal axon growth and EphA-induced growth cone collapse. Ephexin-1 contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A  + D  A   EEL  R GDV+ +   LD+ W+ G 
Sbjct: 2  ARVLQDLSAQLDEELDLREGDVVTITGILDKGWFRGE 38

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 35.4 bits (81), Expect = 0.004
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A++D+   + +EL F  G +I V+   D  W+ G     +G FP  +V
Sbjct: 4   AIYDYSKDKDDELSFMEGAIIYVIKKNDDGWYEGVCNGVTGLFPGNYV 51

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW---GTRGEASGWFPSAFV 191
              A++D  +  + EL  RAG+V+ +      D W     +RGE  G FPS++V
Sbjct: 1   KVRALYDFDSQPSGELSLRAGEVLTITRQDVGDGWLEGRNSRGE-VGLFPSSYV 53

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	518
KOG2070|consensus	661		100.0
KOG4424|consensus	623		100.0
KOG3523|consensus	695		100.0
KOG2996|consensus	865		100.0
KOG4305|consensus	1029		100.0
KOG3520|consensus	1167		100.0
KOG3518|consensus	521		100.0
KOG3521|consensus	846		100.0
cd00160	181	RhoGEF Guanine nucleotide exchange factor for Rho/	99.97
smart00325	180	RhoGEF Guanine nucleotide exchange factor for Rho/	99.97
KOG3519|consensus	756		99.96
PF00621	180	RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho	99.95
KOG3522|consensus	925		99.94
COG5422	1175	ROM1 RhoGEF, Guanine nucleotide exchange factor fo	99.94
KOG4226|consensus	379		99.9
KOG4348|consensus	627		99.9
KOG1029|consensus	1118		99.89
KOG4225|consensus	489		99.86
KOG0689|consensus	448		99.84
KOG3531|consensus	1036		99.83
KOG4240|consensus	1025		99.82
KOG4348|consensus	627		99.82
KOG1029|consensus	1118		99.81
KOG3524|consensus	850		99.8
KOG4226|consensus	379		99.77
KOG4792|consensus	293		99.75
KOG3601|consensus	222		99.67
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.52
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.52
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.37
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.35
KOG2996|consensus	865		99.33
KOG3632|consensus	1335		99.3
KOG2199|consensus	462		99.3
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.28
KOG1118|consensus	366		99.27
cd01224	109	PH_Collybistin Collybistin pleckstrin homology (PH	99.24
KOG2070|consensus	661		99.22
KOG2199|consensus	462		99.2
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.19
cd01261	112	PH_SOS Son of Sevenless (SOS) Pleckstrin homology	99.18
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	99.13
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	99.12
KOG0162|consensus	1106		99.1
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	99.08
KOG1118|consensus	366		99.05
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	99.02
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	99.0
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	98.99
KOG4225|consensus	489		98.97
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	98.88
KOG2856|consensus	472		98.86
KOG0162|consensus	1106		98.85
cd01228	96	PH_BCR-related BCR (breakpoint cluster region)-rel	98.8
KOG4269|consensus	1112		98.8
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	98.77
cd01221	125	PH_ephexin Ephexin Pleckstrin homology (PH) domain	98.76
KOG2856|consensus	472		98.76
cd01232	114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	98.75
KOG4792|consensus	293		98.7
KOG1264|consensus	1267		98.67
KOG2546|consensus	483		98.6
KOG2546|consensus	483		98.54
cd01226	100	PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin	98.53
KOG1264|consensus	1267		98.51
KOG0515|consensus	752		98.45
KOG3655|consensus	484		98.44
cd01227	133	PH_Dbs Dbs (DBL's big sister) pleckstrin homology	98.42
KOG1702|consensus	264		98.39
KOG0515|consensus	752		98.33
KOG3601|consensus	222		98.28
KOG1843|consensus	473		98.26
KOG1843|consensus	473		98.14
KOG3655|consensus	484		98.11
KOG1702|consensus	264		98.06
KOG3875|consensus	362		98.05
cd01223	116	PH_Vav Vav pleckstrin homology (PH) domain. Vav pl	97.94
KOG0931|consensus	627		97.93
KOG3875|consensus	362		97.92
KOG3523|consensus	695		97.75
KOG2222|consensus	848		97.67
PF15405	135	PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.	97.63
KOG2222|consensus	848		97.61
KOG3725|consensus	375		97.56
cd01225	111	PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-	97.55
KOG3771|consensus	460		97.53
KOG4773|consensus	386		97.52
KOG4278|consensus	1157		97.52
KOG3632|consensus	1335		97.49
KOG1451|consensus	812		97.38
KOG3771|consensus	460		97.31
KOG4429|consensus	421		97.3
KOG0197|consensus	468		97.25
KOG4278|consensus	1157		97.2
KOG2528|consensus	490		97.19
KOG4429|consensus	421		97.14
KOG0609|consensus	542		97.12
KOG4773|consensus	386		96.96
cd01229	129	PH_etc2 Epithelial cell transforming 2 (ECT2) plec	96.89
PF15411	116	PH_10: Pleckstrin homology domain	96.78
KOG4575|consensus	874		96.77
KOG3775|consensus	482		96.73
KOG0609|consensus	542		96.67
KOG3557|consensus	721		96.64
KOG2528|consensus	490		96.63
KOG0197|consensus	468		96.54
KOG4575|consensus	874		96.48
KOG3565|consensus	640		96.1
KOG3524|consensus	850		95.85
KOG1451|consensus	812		95.72
KOG3725|consensus	375		95.71
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	95.54
KOG3775|consensus	482		95.41
KOG3557|consensus	721		95.33
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	94.76
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	94.2
KOG0199|consensus	1039		93.9
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	93.48
KOG3522|consensus	925		91.18
smart00287	63	SH3b Bacterial SH3 domain homologues.	91.18
KOG0199|consensus	1039		90.99
KOG3565|consensus	640		90.55
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	89.28
KOG1729|consensus	288		89.15
KOG3705|consensus	580		88.83
PRK10884	206	SH3 domain-containing protein; Provisional	87.76
KOG3812|consensus	475		87.65
KOG3812|consensus	475		87.49
KOG0040|consensus	2399		86.77
smart00287	63	SH3b Bacterial SH3 domain homologues.	86.43
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	85.3
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	83.8
PF11302	75	DUF3104: Protein of unknown function (DUF3104); In	82.19
smart00743	61	Agenet Tudor-like domain present in plant sequence	81.74
cd01256	110	PH_dynamin Dynamin pleckstrin homology (PH) domain	81.71
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	81.67
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	80.82

>KOG2070|consensus

Probab=100.00  E-value=9.3e-47  Score=359.11  Aligned_cols=357  Identities=20%  Similarity=0.340  Sum_probs=298.2

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccCCCchHHHHHhhhcCCCcccc
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLR  217 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (518)
                      .+..++|-|.|...+.|||+|.+||+|+|.+..+.|||+|..+|+.||||++||..++... ++...     .|...++.
T Consensus        16 ~pLvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik~e~-pLs~~-----~~~~~~~~   89 (661)
T KOG2070|consen   16 NPLVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIKSEK-PLSPK-----SGTLKSPP   89 (661)
T ss_pred             CceEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHhhcC-CCCcc-----ccCCCCCc
Confidence            3568999999999999999999999999999999999999999999999999999998443 33221     11111222


Q ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Q psy824          218 RRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKL  297 (518)
Q Consensus       218 ~~~~~~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~  297 (518)
                      +.. .+...+...|.-+++.+++||+.|++.|..+...|+.||+ .+.+++..++..|.+|+++|+.+|+.|+.+|+++.
T Consensus        90 k~~-~t~~~~~~Yr~vVLk~~lesEkey~~eLq~lL~t~L~Plq-~s~iLs~~ey~~LmgNfeeI~t~~qdL~~qlEec~  167 (661)
T KOG2070|consen   90 KGF-DTTAINKSYRNVVLKNILESEKEYSKELQTLLSTYLRPLQ-TSEILSSAEYSYLMGNFEEICTFQQDLVQQLEECT  167 (661)
T ss_pred             ccc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hccccchHHHHHHhcchHHhHhHHHHHHHHHHHhh
Confidence            221 2234467889999999999999999999999999999998 68899999999999999999999999999999998


Q ss_pred             CCCCCCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcch
Q psy824          298 DWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAP  377 (518)
Q Consensus       298 ~~~~~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~P  377 (518)
                      +... ..+++|.||+..++.++.        +|..||.||+.|+..+.++.+++.+|++..-.  ...+...|..=|.+|
T Consensus       168 ~~~~-~q~RVGg~fln~ap~mkt--------~~~aYcanHP~AV~VL~k~~dELek~me~Qga--sspg~lvLttgLSkP  236 (661)
T KOG2070|consen  168 KLPE-AQQRVGGCFLNLAPQMKT--------LYLAYCANHPSAVNVLTKHSDELEKFMETQGA--SSPGILVLTTGLSKP  236 (661)
T ss_pred             cCch-hhhhhhhHHHhhhHHHHH--------HHHHHHhcCchhhhHHHHhHHHHHHHHHhcCC--CCCCeEEEecccchH
Confidence            6443 367999999999996654        79999999999999999999999999886432  333443466778899


Q ss_pred             hhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHhcccCCCccccccccceEe
Q psy824          378 AAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRME-SLEKLAAWQQRVEGWEGEDLIETSSQLIH  456 (518)
Q Consensus       378 vQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e-~~~~l~~~~~~i~~~~~~~l~~~~r~ll~  456 (518)
                      .-|+=||+-||++|.++.+..|||+.+++++...++++...+.+..++.| .++.|.   ..|.+|.+.++... +.+|+
T Consensus       237 frrldkY~~lLQELERhme~~HpDrgD~qrs~avfk~~~~~Cq~lRkqKEleLqiLt---~~i~~w~g~d~s~l-G~iiy  312 (661)
T KOG2070|consen  237 FRRLDKYPTLLQELERHMEDYHPDRGDIQRSMAVFKNLSAQCQELRKQKELELQILT---EPIRNWEGDDISTL-GNIIY  312 (661)
T ss_pred             HHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc---ccccccccchhhhc-cceEe
Confidence            99999999999999999999999999999999999999999988544433 344443   68889999877775 78999


Q ss_pred             eeeEEEEecCcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCCCCCC
Q psy824          457 QGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKGRTD  518 (518)
Q Consensus       457 ~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~  518 (518)
                      .|.+.+...+...++||+.||.+.|++.... .....|+|.+.+|+..+.|+..+|.+++.+
T Consensus       313 mg~v~Vqy~~ad~~dRy~~LF~~~llflsvs-~rMs~fIyegKlp~tG~iV~klEdte~~~n  373 (661)
T KOG2070|consen  313 MGQVLVQYAGADEKDRYLLLFPNVLLFLSVS-PRMSGFIYEGKLPTTGMIVTKLEDTENHRN  373 (661)
T ss_pred             eeehhhhhcCcchhhheeeeccceeeeeEec-cccchhhhccccccceeEEeehhhhhcccc
Confidence            9999887777666799999999999999743 223568888999999999999999988753

>KOG4424|consensus

Probab=100.00  E-value=3.4e-42  Score=336.12  Aligned_cols=264  Identities=23%  Similarity=0.311  Sum_probs=240.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHH-HHHHHHHhhCCCCCCCCc
Q psy824          228 DQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSS-FLEDLETKLDWDAPYKSC  306 (518)
Q Consensus       228 ~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~-~l~~L~~~~~~~~~~~~~  306 (518)
                      .+++..+++||+.||+.||..|..+.++|..+|.. ...++.+.+..||+||..|+.+|.. ||..|+.+.         
T Consensus        64 ~qk~~~iaqEll~tE~~Yv~~L~lLd~~F~~~L~~-~~~~~~~~v~~lf~nIssi~~fh~qfllp~l~~r~---------  133 (623)
T KOG4424|consen   64 LQKLRHIAQELLDTERTYVKRLHLLDQVFCRRLLE-EASIPADVITGLFGNISSIHNFHGQFLLPELEKRI---------  133 (623)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhhH---------
Confidence            68899999999999999999999999999999973 3489999999999999999999976 566776653         


Q ss_pred             hHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHH---HHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHHH
Q psy824          307 IGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL---FCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELA  383 (518)
Q Consensus       307 ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~---~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~~  383 (518)
                      ||++|.+++|+|++         |+.|..||++|+.   .+..+++.|++++..++..+.|.++. |.++||.|||||+|
T Consensus       134 Iadv~qKlAPFLKm---------YseY~knydrA~~L~~~lt~rsp~F~~vl~~Iek~~~cg~l~-LqhhMiePVQRIPR  203 (623)
T KOG4424|consen  134 IADVFQKLAPFLKM---------YSEYAKNYDRALKLFQTLTSRSPQFRKVVEEIEKQPECGGLK-LQHHMIEPVQRVPR  203 (623)
T ss_pred             HHHHHHHhhhHHHH---------HHHHHhcchhHHHHHHHHHhhChHHHHHHHHHhhchhcCCcc-chhheechhhhhhH
Confidence            99999999999998         9999999999964   56777899999999999999999877 99999999999999


Q ss_pred             HHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccccceEeeeeEEEE
Q psy824          384 RMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRV  463 (518)
Q Consensus       384 y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~r~ll~~g~l~~~  463 (518)
                      |.|||+++++++|++.+|+.++++|++.|...++++|++++++|+.++|.++|.++.+  ..+|+.|+|.||++|.+.++
T Consensus       204 YeLLLk~yl~~lp~~d~D~~d~~ksLe~I~~aA~HsNaai~k~E~~~kLlevqe~LG~--e~dIV~PsreLiKEG~l~Ki  281 (623)
T KOG4424|consen  204 YELLLQDYLLYLPPDDPDYKDLKKSLELISTAASHSNAAITKMERLQKLLEVQEQLGN--EEDIVSPSRELIKEGQLQKI  281 (623)
T ss_pred             HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CccccCcHHHHhhccceeee
Confidence            9999999999999999999999999999999999999999999999999999999987  36799999999999999999


Q ss_pred             ecCc-ccceEEEEEeCCeEEEEeecc-CCCCceEEEEEeecCCeeEEEcCCC
Q psy824          464 TSGM-WTNTITLFLFDHQLVYCKRDI-LKRNTHVYKARLNIDTSQIINLPDG  513 (518)
Q Consensus       464 ~~~~-~~~~~~~fLF~d~ll~~k~~~-~~~~~~~~k~~i~l~~~~v~~~~d~  513 (518)
                      +.+. ...+||||||||++++|+++. ....+|..+..+.+.++.|.+...+
T Consensus       282 s~k~~~~qeRylfLFNd~~lyc~~r~~~~~~k~~~r~~~s~~~~~v~~~~~~  333 (623)
T KOG4424|consen  282 SAKNGTTQERYLFLFNDILLYCKPRKRLPGSKYEVRARCSISHMQVQEDDNE  333 (623)
T ss_pred             eccCCCcceeEEEEehhHHHhhhhhhhcccceeccceeeccCcchhcccccc
Confidence            8874 367999999999999999654 4457899999999999999876655

>KOG3523|consensus

Probab=100.00  E-value=9.5e-37  Score=298.73  Aligned_cols=277  Identities=18%  Similarity=0.203  Sum_probs=244.5

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCC
Q psy824          223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAP  302 (518)
Q Consensus       223 ~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~  302 (518)
                      .+...++++|++++|+|.+|..|++.|++++..|+..-. -...++..+.+.||+||.++..++..||.+|+.++.. ..
T Consensus       250 tls~eerklQEa~FEviTSEaSYl~SLnllv~hF~~s~~-l~~~Ls~~d~~~LFSni~~V~~~Serfl~dLE~r~e~-ni  327 (695)
T KOG3523|consen  250 TLSPEERKLQEAKFEVITSEASYLRSLNLLVDHFMNSKE-LRSTLSASDRHHLFSNIQDVREVSERFLCDLEARLEE-NI  327 (695)
T ss_pred             ccCHHHHHHHhhhheeehhhHHHHHHHHHHHHHHhhhHH-HHHhcChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-Cc
Confidence            366789999999999999999999999999999987643 4578999999999999999999999999999999964 34


Q ss_pred             CCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhh---HHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcchhh
Q psy824          303 YKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKD---KWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAA  379 (518)
Q Consensus       303 ~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~---~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQ  379 (518)
                      ....|++|..+|++.+..        .|..||.|+.   +.+..+...|..|...++.++..+.|.+++ |.+|||.|||
T Consensus       328 ~i~dicDiv~~ha~~~f~--------vYv~Y~tNQ~YQeRT~qrL~~~n~~F~e~l~rLE~~p~C~~Lp-l~SFLiLPmQ  398 (695)
T KOG3523|consen  328 FIDDICDIVEDHAAKHFS--------VYVKYCTNQVYQERTLQRLLTENPAFREVLERLESSPKCQGLP-LRSFLILPMQ  398 (695)
T ss_pred             hhhHHHHHHHHhcccccc--------eeehhccchHHHHHHHHHHHhcChHHHHHHHHHhcCccccCCC-chhhhhchHH
Confidence            578899999999887433        2778888854   446678888999999999999999999987 9999999999


Q ss_pred             HHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc--CCCccccccccceEee
Q psy824          380 KELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEG--WEGEDLIETSSQLIHQ  457 (518)
Q Consensus       380 Rl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~--~~~~~l~~~~r~ll~~  457 (518)
                      ||+|++|||+.|++.|++..++|+..++|+.++++++..+|+..++++....|..|+++|+-  .+.++|+...|.|++.
T Consensus       399 RITRL~LLl~nIl~rt~~~ser~~~a~~Al~av~klVr~CNe~a~rMertEeli~i~~~leF~kvK~~PLiS~sRwLvk~  478 (695)
T KOG3523|consen  399 RITRLPLLLDNILKRTEEGSERYETATKALKAVSKLVRDCNEGARRMERTEELIRISRQLEFKKVKAFPLVSQSRWLVKR  478 (695)
T ss_pred             HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccceeeeccchhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999973  3457899999999999


Q ss_pred             eeEEEEecCc---------ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCC
Q psy824          458 GEVIRVTSGM---------WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPD  512 (518)
Q Consensus       458 g~l~~~~~~~---------~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d  512 (518)
                      |+|+......         ..+.+|+|||||+||+||++.  ..+|.+...-+.+.++|.+++.
T Consensus       479 GELt~l~~~~~s~~l~~k~~~~~vylfLFnD~Llitk~k~--~~~f~V~Dya~r~~l~ve~~e~  540 (695)
T KOG3523|consen  479 GELTQLVERRASPLLFSKRLSKTVYLFLFNDLLLITKKKS--EGSFQVFDYAPRSLLQVEKCEP  540 (695)
T ss_pred             cccceeecccccchhhcccccceeeeeeecceeeEeeecC--CCceEEeeccchhhhhhhhcCc
Confidence            9997664322         245899999999999999884  6789999999999999988874

>KOG2996|consensus

Probab=100.00  E-value=3.4e-36  Score=292.17  Aligned_cols=267  Identities=20%  Similarity=0.286  Sum_probs=230.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q psy824          226 SNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKS  305 (518)
Q Consensus       226 ~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~~  305 (518)
                      +...||.+.+.||-+||.+|++.|..|.+.|+.||+   ..+++.++..||.||++|..+|..||.+|+..+...+  .+
T Consensus       193 te~dkRncClrEi~~TE~kY~~tL~sI~k~f~~PLk---~~l~~ad~~ivFiNieel~klHt~ll~ei~~sv~v~~--~q  267 (865)
T KOG2996|consen  193 TETDKRNCCLREIQQTEEKYTQTLESIEKTFMEPLK---RFLPPADYNIVFINIEELNKLHTALLAEIEYSVKVAG--GQ  267 (865)
T ss_pred             CchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCChhhhheeEecHHHHHHHHHHHHHHhHHHhhCCC--cc
Confidence            456899999999999999999999999999999997   6999999999999999999999999999999986443  48


Q ss_pred             chHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHH---HHHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHH
Q psy824          306 CIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWL---LFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKEL  382 (518)
Q Consensus       306 ~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~---~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~  382 (518)
                      .++++|+++.+.|-+         |..||++.+.|.   ..+.+.++.+..-++.|....+.... .|.++|+.||||++
T Consensus       268 tl~qVFikyker~li---------YG~YCS~~e~a~k~ln~llktrEdv~~kleEct~r~nngkF-~l~DLL~VPmQRvl  337 (865)
T KOG2996|consen  268 TLYQVFIKYKERLLI---------YGKYCSNVESARKLLNELLKTREDVSRKLEECTARANNGKF-TLRDLLVVPMQRVL  337 (865)
T ss_pred             cHHHHHHHHHHHHhh---------hhhhhccchHHHHHHHHHHHHhHHHHHHHHHHHhhhcCCce-eeceeeeeeHHHHH
Confidence            899999999999987         999999999884   46677888888888888875444444 49999999999999


Q ss_pred             HHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccccceEeeeeEEE
Q psy824          383 ARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIR  462 (518)
Q Consensus       383 ~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~r~ll~~g~l~~  462 (518)
                      +|+|||++|.|+|.... +...|+.|+++|+.++.+||+.+|..|.+..+.++|.+|++.. .+|...|| .--.|++..
T Consensus       338 KYhLLLkEL~kht~~a~-ek~~LkeAleaM~Dla~yiNEvkRD~etlr~I~efq~SIenL~-~pl~~~GR-pkiDGElki  414 (865)
T KOG2996|consen  338 KYHLLLKELVKHTDEAS-EKRNLKEALEAMEDLAQYINEVKRDNETLRVIDEFQLSIENLS-QPLHDFGR-PKIDGELKI  414 (865)
T ss_pred             HHHHHHHHHHHhcccCC-hhhhHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHhHHhhc-chHHHhCC-CCcCceEEE
Confidence            99999999999998544 4559999999999999999999999999999999999999875 35666654 455788765


Q ss_pred             EecC-cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCC
Q psy824          463 VTSG-MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG  513 (518)
Q Consensus       463 ~~~~-~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~  513 (518)
                      .+.. ..+++||+|||+.++|+||++   +..|..+..|.++...+.+.+-+
T Consensus       415 ~s~~~~tkqdRyiFLfDkvviVCKrk---G~sy~lke~i~l~~y~m~d~~~~  463 (865)
T KOG2996|consen  415 TSTQAHTKQDRYIFLFDKVVIVCKRK---GDSYELKEIIYLNAYKMSDDPID  463 (865)
T ss_pred             eehhcCCccceEEeEecceEEEeecc---CcchhHHHHHHHHhhccccCCCC
Confidence            5443 346799999999999999998   77888888888888888776544

>KOG4305|consensus

Probab=100.00  E-value=2.3e-36  Score=318.35  Aligned_cols=338  Identities=18%  Similarity=0.185  Sum_probs=268.4

Q ss_pred             EEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccCCCchHHHHHhhhcCCCccccccc
Q psy824          141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLRRRT  220 (518)
Q Consensus       141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (518)
                      .+++.+++.+.     ++.-+-.+..-......||.++.+|..+.+|.      .....+.+          ........
T Consensus       267 l~~cys~t~~~-----s~~cysiscp~~leq~~~~~~k~~~~~~~~~s------~d~~~~~W----------~~s~d~~~  325 (1029)
T KOG4305|consen  267 LLRCYSNTCSR-----SLLCYSISCPRRLEQQARLELKLSSGLKRSSS------EDEEEKLW----------SESVDLSV  325 (1029)
T ss_pred             eeeeechhhhh-----hhhcccccCccccccchhhhhccchhhcCCCC------ccccchhh----------hhcCchHh
Confidence            34444555443     55556666666666788999998887777666      11111111          11122222


Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHH----HHHHhcCHHHHHHHHHHHHHHHHHh
Q psy824          221 SISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQ----IQTIFGNLEDILAFQSSFLEDLETK  296 (518)
Q Consensus       221 ~~~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~----~~~lF~ni~~i~~~h~~~l~~L~~~  296 (518)
                      ..++..+|.|||++|.||+.||++||++|+.+.+.|+.||. .+.++++++    +..+|.|+++|+.+|..||.+|..+
T Consensus       326 le~ls~rEikRQe~I~Eli~tE~d~v~dLel~re~y~kpl~-~S~iipE~~~~~Fi~~vF~n~~~ii~ln~~LL~aL~~r  404 (1029)
T KOG4305|consen  326 LESLSPREIKRQEAIFELIYTEEDFVADLELAREIYRKPLL-ESSIIPEQERAEFIAHVFGNIEEIIQLNEKLLKALRVR  404 (1029)
T ss_pred             HhhcCHHHhhhhheeEEEEeehhHHHHHHHHHHHHHhChHh-hhccCccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            34577899999999999999999999999999999999997 458899888    9999999999999999999999999


Q ss_pred             hCCCCCCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHH---HHHhhcchHHHHHHHHHHHhhccccccCccCC
Q psy824          297 LDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWL---LFCCRSLEDKARWLAAFQQERALVEQDREDGL  373 (518)
Q Consensus       297 ~~~~~~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~---~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~  373 (518)
                      ....+ .+..||++|+.+++.|+.         |-.||+++..|-   ...++.+..|++|++.|+..+.+.+.. |.+|
T Consensus       405 ~k~~G-~V~~IGdIll~~lp~~~~---------yi~Y~a~q~~ak~lie~k~k~n~~Fa~fl~~~~~sp~~rkl~-L~~F  473 (1029)
T KOG4305|consen  405 QKLSG-VVEGIGDILLAWLPKAEP---------YISYGANQAYAKALIEQKKKQNPRFARFLKECESSPESRKLD-LVSF  473 (1029)
T ss_pred             hccCC-ccchHHHHHHHHhhhhhH---------HHHHHhhhHHHHHHHHHHhccCchHHHHHHHHHhChhhhccc-hhhh
Confidence            87655 789999999999999998         677888877663   334577899999999999999999885 9999


Q ss_pred             CcchhhHHHHHHHhhhhccCCC-CCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCC-C----ccc
Q psy824          374 EFAPAAKELARMSAARCHSSRP-PTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWE-G----EDL  447 (518)
Q Consensus       374 L~~PvQRl~~y~LlL~~l~k~t-~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~-~----~~l  447 (518)
                      |.+|+||+.||||||++|+|+| |.+|+|++.|.+|++.++.++.++|...++.|+..++.+++.++- ++ +    .-+
T Consensus       474 L~kp~sRl~RYpLllr~ILk~TdP~n~~D~q~L~~aI~~ir~l~~~iN~~~g~aen~~~l~~l~~qll-fe~~e~~~L~l  552 (1029)
T KOG4305|consen  474 LTKPTSRLQRYPLLLREILKHTDPENHPDLQLLKKAIEIIRGLLSEINQGSGEAENRCRLEELSQQLL-FEPGEAVNLGL  552 (1029)
T ss_pred             hccccchhheeeHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHhChhhccchhhhhHHHHHHHhh-ccccccccccc
Confidence            9999999999999999999999 888999999999999999999999999999999999999999985 33 2    235


Q ss_pred             cccccceEeeeeEEEEecCcc--cceEEEEEeCCeEEEEeeccC---CCCceEEEEEeecCCeeEEEcCC
Q psy824          448 IETSSQLIHQGEVIRVTSGMW--TNTITLFLFDHQLVYCKRDIL---KRNTHVYKARLNIDTSQIINLPD  512 (518)
Q Consensus       448 ~~~~r~ll~~g~l~~~~~~~~--~~~~~~fLF~d~ll~~k~~~~---~~~~~~~k~~i~l~~~~v~~~~d  512 (518)
                      ..+.|+|+..|.|.+....+.  .+.-+.|||+|.+|++++...   .....++..+|||+-+.+....|
T Consensus       553 ~d~~R~l~fkgil~~~~~~~~~~~~~~~~fLl~d~lLLt~~~k~~~~~~~~kvf~RPiPl~lL~~~~~~d  622 (1029)
T KOG4305|consen  553 NDPERKLIFKGILKRKELSKTDGTKEDYIFLLLDNLLLTRKVKQNNKRHRHKVFSRPIPLDLLSLSPSED  622 (1029)
T ss_pred             cChhhhcceeeeeeeccccccCCCccceeehhhhhhhhhhhhhhccccccceeeccCcchhhhccccccc
Confidence            556799999998876544322  223489999999998874321   22456778899998887764443

>KOG3520|consensus

Probab=100.00  E-value=1.2e-35  Score=313.80  Aligned_cols=292  Identities=16%  Similarity=0.221  Sum_probs=251.6

Q ss_pred             CCCccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHH
Q psy824          211 GGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFL  290 (518)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l  290 (518)
                      ++....+.+....+...+.|||++|.||+.||+.+|+.|++|..+|..+|. ...+++..++..||.|+++|+++|..|+
T Consensus       371 sWs~~V~~e~L~~lk~~~iKRQEvI~EL~~TE~~HVRTLKIl~~vF~q~m~-~e~~~~~~~l~~LFP~LdeL~eiH~~f~  449 (1167)
T KOG3520|consen  371 SWSEAVPSEVLKGLKKDVVKRQEVIYELFQTERHHVRTLKILDRVFYQPMM-EELLFPQEELNKLFPCLDELIEIHSSFL  449 (1167)
T ss_pred             chhhccCHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCHHHHHHhcccHHHHHHHHHHHH
Confidence            344444555555677788999999999999999999999999999999998 6889999999999999999999999999


Q ss_pred             HHHHHhhCCCCCCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHH---HhhcchHHHHHHHHHHHhhccccc
Q psy824          291 EDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLF---CCRSLEDKARWLAAFQQERALVEQ  367 (518)
Q Consensus       291 ~~L~~~~~~~~~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~---~~~~~~~~~~fl~~~~~~~~~~~~  367 (518)
                      +.|.++...+......||++++.+   |.--..-.+++.|..||+++..|+..   +.++.+.|..|++.+...+.|.++
T Consensus       450 ~~lk~rr~e~~~vI~~IGDlLl~~---FsGe~ae~L~~~~a~FCs~q~~ALe~~K~k~~KD~rFq~fvkkaeS~p~cRRL  526 (1167)
T KOG3520|consen  450 QRLKERRKESLVVIKRIGDLLLDQ---FSGENAERLKKTYAQFCSRQSIALEQLKTKQAKDKRFQAFVKKAESNPVCRRL  526 (1167)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHH---cCchHHHHHHHHHHHHhhccHHHHHHHHHHHhccHHHHHHHHHhhcchHHHhh
Confidence            999998865554578999999988   44445567888999999999999753   456789999999999999999988


Q ss_pred             cCccCCCcchhhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc------
Q psy824          368 DREDGLEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEG------  441 (518)
Q Consensus       368 ~~l~~~L~~PvQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~------  441 (518)
                      . |.++++.-+|||+||||||+.|+|||..+..|+++|+.|++.+++|+..||+.++..|+.++|.+||++++.      
T Consensus       527 ~-lkd~I~~v~QRLTKYPLLle~I~k~T~~~~~E~e~L~~Al~~~K~IL~~Vn~aV~~~E~~~RL~eiq~RlD~~s~~~~  605 (1167)
T KOG3520|consen  527 G-LKDCILLVTQRLTKYPLLLERILKYTEDNTTEREKLQRALELVKEILSAVDQAVKEAEKKQRLEEIQRRLDAKSLSKY  605 (1167)
T ss_pred             c-chHHHHHHHHHHhhchHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhc
Confidence            7 999999999999999999999999999899999999999999999999999999999999999999999972      


Q ss_pred             -----CCCccccccccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccCCCCceEEEE------EeecCCeeEEEc
Q psy824          442 -----WEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKA------RLNIDTSQIINL  510 (518)
Q Consensus       442 -----~~~~~l~~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~------~i~l~~~~v~~~  510 (518)
                           |...+|.  .|+|||+|.|+......+.++++++||.|+||+..++   ..+|+|+.      .|+|..+.|+++
T Consensus       606 ~~~~~F~kldLt--~rkLihdG~Ltwk~~~gk~~dv~vlLLtD~LvlLqeq---D~Kyifksl~~~spVisL~~livRev  680 (1167)
T KOG3520|consen  606 KNGEEFRKLDLT--RRKLIHDGPLTWKTARGKTKDVHVLLLTDILVLLQEK---DQKYIFKSLDKKSPVISLQKLIVREV  680 (1167)
T ss_pred             cccchhhhhhhh--hhheeccCceEEeeccCchhhhHHHHHHHHHHHhhhc---CceeEeeccccCCCceehHHHHHHHH
Confidence                 2223344  4899999999877666567899999999999999887   56888875      477777766655


Q ss_pred             CC
Q psy824          511 PD  512 (518)
Q Consensus       511 ~d  512 (518)
                      -.
T Consensus       681 At  682 (1167)
T KOG3520|consen  681 AT  682 (1167)
T ss_pred             hc
Confidence            43

>KOG3518|consensus

Probab=100.00  E-value=5.6e-34  Score=260.19  Aligned_cols=258  Identities=23%  Similarity=0.340  Sum_probs=216.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCCCCCch
Q psy824          230 VRSRVVRELINTERDFVKVLHDVSEGYLAECRR--RNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCI  307 (518)
Q Consensus       230 kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~--~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~~~i  307 (518)
                      .-.+|+.||++||++||++|+.+++.|+.-++.  .+-.+.-+.+..||++|+.|+.++..++.+|+.+-.  +  .-.|
T Consensus       121 ~ldriaieildtertyvedl~aiie~yld~i~edqeklkl~ldaisalfg~ie~ifafnkel~n~ldaadl--d--~v~i  196 (521)
T KOG3518|consen  121 HLDRIAIEILDTERTYVEDLKAIIEDYLDCIREDQEKLKLGLDAISALFGCIEDIFAFNKELLNDLDAADL--D--CVAI  196 (521)
T ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhccCcHHHHHHHhhhHHHHHHHHHHHHHHHhhccc--c--hHHH
Confidence            356789999999999999999999999998863  234577899999999999999999999999998743  1  3568


Q ss_pred             HHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHH--HHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHHHHH
Q psy824          308 GETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL--FCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARM  385 (518)
Q Consensus       308 g~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~--~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~~y~  385 (518)
                      +.||+.....|..         |..||.||++.+.  ..|..++-..++++.-+.  .++...+|.+||++|||||++|.
T Consensus       197 a~cfve~s~efe~---------yieyctny~rmmatl~~~~q~~ilaka~qerq~--al~hsl~l~ayllkpvqrilkyh  265 (521)
T KOG3518|consen  197 AECFVEKSEEFED---------YIEYCTNYHRMMATLTECMQNKILAKAFQERQE--ALKHSLPLGAYLLKPVQRILKYH  265 (521)
T ss_pred             HHHHHhcchhHHH---------HHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHH--HHhcccchhHHHHHHHHHHHHHH
Confidence            9999999999988         8999999998754  456777878777765443  34444559999999999999999


Q ss_pred             HhhhhccCCCCCC-CC-ChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCcc-----ccccccceEeee
Q psy824          386 SAARCHSSRPPTD-HP-DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGED-----LIETSSQLIHQG  458 (518)
Q Consensus       386 LlL~~l~k~t~~~-~~-d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~-----l~~~~r~ll~~g  458 (518)
                      |+|.+|.|+.+.+ || ++..+..|.+.|...+.+||+++++.|...++-++|+.+.+|++..     |... +.|+.+|
T Consensus       266 lfle~i~k~l~~~thpeel~qvk~ahd~m~~qa~~indekkkaeh~erlgeiqs~lqkwkadeiqi~dlsay-gdlllea  344 (521)
T KOG3518|consen  266 LFLEEIEKHLDKDTHPEELDQVKDAHDTMQRQAAHINDEKKKAEHAERLGEIQSLLQKWKADEIQIPDLSAY-GDLLLEA  344 (521)
T ss_pred             HHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccccCCchhhh-HHHHHHH
Confidence            9999999999975 55 6899999999999999999999999999999999999999999843     3333 6778888


Q ss_pred             eEEEEecCcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEE
Q psy824          459 EVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIIN  509 (518)
Q Consensus       459 ~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~  509 (518)
                      .+.....   +..|.+|||+.+|+++|++   ...|++|..|--.++-+++
T Consensus       345 tfr~aga---k~~rllflfdellli~kkr---~anf~~k~~ilc~nlmlne  389 (521)
T KOG3518|consen  345 TFRIAGA---KNERLLFLFDELLLITKKR---DANFTCKAHILCGNLMLNE  389 (521)
T ss_pred             HHHHhcc---cccchHHHHHhHHhheeec---CCceeeehhhhccchhhhe
Confidence            7655443   3488999999999999987   7889999988877766554

>KOG3521|consensus

Probab=100.00  E-value=5.3e-32  Score=267.02  Aligned_cols=279  Identities=19%  Similarity=0.242  Sum_probs=231.0

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCCHHHHHHHhcCHHHHHHHHHHH-HHHHHHhh--
Q psy824          223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECR--RRNDMFSPEQIQTIFGNLEDILAFQSSF-LEDLETKL--  297 (518)
Q Consensus       223 ~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~--~~~~~l~~~~~~~lF~ni~~i~~~h~~~-l~~L~~~~--  297 (518)
                      +++.++.+.|++|+||+.||-.||+.|..+.+.|..-|.  ++.++|-+.+..+||+|+..|+++|..| +.-|.-.+  
T Consensus       170 slS~~~~kqQeAiWELvtTE~~YIrkL~~~tdlllacL~nlQe~GlL~dVeaerlFsNv~~l~~~n~slW~~~l~P~lak  249 (846)
T KOG3521|consen  170 SLSDKSCKQQEAIWELVTTEFRYIRKLLRYTDLLLACLLNLQECGLLKDVEAERLFSNVPTLFNVNRSLWLQVLEPILAK  249 (846)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence            356678899999999999999999999999999876553  3789999999999999999999999997 34343333  


Q ss_pred             --CCCCC-CCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHH---HHhhcchHHHHHHHHHHHhhccccccCcc
Q psy824          298 --DWDAP-YKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL---FCCRSLEDKARWLAAFQQERALVEQDRED  371 (518)
Q Consensus       298 --~~~~~-~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~---~~~~~~~~~~~fl~~~~~~~~~~~~~~l~  371 (518)
                        ....+ ....+-.-|+.|...|.+         |..||..+...+.   .+.+.++-|..|+.+|+..+.|.++. |-
T Consensus       250 sr~TgepLd~~~lq~GFl~f~s~f~p---------Y~~ycle~s~cm~y~rel~~~n~lFrafvtW~Ekqk~c~Rqk-L~  319 (846)
T KOG3521|consen  250 SRETGEPLDPNYLQNGFLDFGSWFRP---------YTNYCLEHSDCMKYIRELLKENELFRAFVTWAEKQKNCDRQK-LI  319 (846)
T ss_pred             HHhhCCCCChHHHHHHHHHHHHhhhH---------HHHHHHHHhHHHHHHHHHhccchHHHHHHHHHHhhhhhhhHH-HH
Confidence              11111 123455679999999988         8888888776654   45667888999999999999999887 99


Q ss_pred             CCCcchhhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCc------
Q psy824          372 GLEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGE------  445 (518)
Q Consensus       372 ~~L~~PvQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~------  445 (518)
                      +.|++|+||++||+|||+.++|.|+ +-.+.+.+...++.++..+.+||..++..+..++|..+-.+|+++.-.      
T Consensus       320 D~l~kPmQRLTKY~LLLkAVlK~t~-d~~e~Eai~aMi~svEsf~~~vN~~l~qrqererL~~vm~rIe~ydvVd~~sde  398 (846)
T KOG3521|consen  320 DTLSKPMQRLTKYPLLLKAVLKVTT-DEREREAISAMIDSVESFTAHVNKELRQRQERERLAAVMRRIEGYDVVDQDSDE  398 (846)
T ss_pred             HHhhhHHHHhhhhHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccCCcHHH
Confidence            9999999999999999999999998 667899999999999999999999999999999999999999876421      


Q ss_pred             ------------ccccc--------ccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccC-CCCceEEEEEeecCC
Q psy824          446 ------------DLIET--------SSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDIL-KRNTHVYKARLNIDT  504 (518)
Q Consensus       446 ------------~l~~~--------~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~-~~~~~~~k~~i~l~~  504 (518)
                                  +|..+        .|+|+++|++.....+..+-++|||||+|+||+||+..+ .....+++.++-++.
T Consensus       399 vdknLK~~~~~~Dl~apm~g~~~~htRqLlleGdlrmKegk~sK~DVhcfLfTDllLVcK~v~k~~drlKVIRpPll~dk  478 (846)
T KOG3521|consen  399 VDKNLKLFLNLLDLTAPMHGRKPEHTRQLLLEGDLRMKEGKGSKADVHCFLFTDLLLVCKKVQKKADRLKVIRPPLLMDK  478 (846)
T ss_pred             HHHHhhhhhhhhccccCCCCCChhhhhhhhhccceecccCCCcccceeeeeehhHHHHhHHHhhhcccceeeccchhhcc
Confidence                        11111        299999999877766555679999999999999996544 446678899999999


Q ss_pred             eeEEEcCC
Q psy824          505 SQIINLPD  512 (518)
Q Consensus       505 ~~v~~~~d  512 (518)
                      +.+...+|
T Consensus       479 lv~q~~~d  486 (846)
T KOG3521|consen  479 LVCQYLRD  486 (846)
T ss_pred             eeeeecCC
Confidence            99998887

>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain

Probab=99.97  E-value=1.3e-30  Score=236.62  Aligned_cols=177  Identities=26%  Similarity=0.379  Sum_probs=154.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCCCCCchHH
Q psy824          231 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDM-FSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGE  309 (518)
Q Consensus       231 R~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~-l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~~~ig~  309 (518)
                      |+.+++||++||++||++|+.+.+.|..|+.. ... ++..++..||+|+++|+.+|+.|+..|+.+...+......+|+
T Consensus         1 r~~vi~Eli~tE~~Yv~~L~~l~~~y~~~l~~-~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~~~~~~~i~~   79 (181)
T cd00160           1 RQEVIKELLQTERNYVRDLKLLVEVFLKPLDK-ELLPLSPEEVELLFGNIEEIYEFHRIFLKSLEERVEEWDKSGPRIGD   79 (181)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhccCcccchHHH
Confidence            68999999999999999999999999999974 344 8999999999999999999999999999998543334578999


Q ss_pred             HHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHH---hhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHHHHHH
Q psy824          310 TFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFC---CRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMS  386 (518)
Q Consensus       310 ~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~---~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~~y~L  386 (518)
                      +|+++.+.|+.         |..||.+++.+...+   .+.++.|.+|.+.++.  ...+. ++.+||++||||++||+|
T Consensus        80 ~f~~~~~~~~~---------Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~--~~~~~-~l~~~L~~PvQRl~rY~l  147 (181)
T cd00160          80 VFLKLAPFFKI---------YSEYCSNHPDALELLKKLKKFNKFFQEFLEKAES--ECGRL-KLESLLLKPVQRLTKYPL  147 (181)
T ss_pred             HHHHhhhHHHH---------HHHHHhChHHHHHHHHHHHHccHHHHHHHHHHHH--hcccC-CHHHHhhhhHHHhchHHH
Confidence            99999996655         999999999886543   3457778888777765  33444 499999999999999999


Q ss_pred             hhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q psy824          387 AARCHSSRPPTDHPDYVKITEALEAMRDVAMLIN  420 (518)
Q Consensus       387 lL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn  420 (518)
                      ||++|+|+||++|+|+..|+.|++.+++++.+||
T Consensus       148 LL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~iN  181 (181)
T cd00160         148 LLKELLKHTPDGHEDREDLKKALEAIKEVASQVN  181 (181)
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999887

It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.

>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases

Probab=99.97  E-value=1e-30  Score=237.13  Aligned_cols=178  Identities=25%  Similarity=0.414  Sum_probs=157.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHh
Q psy824          234 VVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLK  313 (518)
Q Consensus       234 ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~~~ig~~f~~  313 (518)
                      ||+||++||++||++|+.+.+.|..|+....+.++..++..||+|+++|+.+|+.|+.+|+++...+.+....+|++|++
T Consensus         1 ii~Eli~tE~~Yv~~L~~l~~~y~~~l~~~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~~~~~~~~~~i~~~f~~   80 (180)
T smart00325        1 VLKELLQTERNYVRDLKLLVEVFLKPLKKELKLLSPNELETLFGNIEEIYEFHRDFLDELEERIEEWDDSPERIGDVFLK   80 (180)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence            58999999999999999999999999985433899999999999999999999999999999985432346899999999


Q ss_pred             hhcCcCCchhHHHHHHHHHhcchhhHHHHHH--hhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHHHHHHhhhhc
Q psy824          314 HKSGFHPHLGVTVRHAIKIHCSDKDKWLLFC--CRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCH  391 (518)
Q Consensus       314 ~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~--~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~~y~LlL~~l  391 (518)
                      +.+.|+.         |..||.+++.+...+  +.+++.|..|++.+.....+.+.. |.+||++||||++||++||++|
T Consensus        81 ~~~~~~~---------Y~~Y~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~-l~~~L~~PvqRl~rY~lll~~l  150 (180)
T smart00325       81 LEEFFKI---------YSEYCSNHPDALELLKKLKKNPRFQKFLKEIESSPQCRRLT-LESLLLKPVQRLTKYPLLLKEL  150 (180)
T ss_pred             hhHHHHH---------HHHHHHhHHHHHHHHHHhhcChhHHHHHHHHhCChhhccCC-HHHHHhHHHHHhccHHHHHHHH
Confidence            9776655         999999999886544  457889999999988766665444 9999999999999999999999


Q ss_pred             cCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q psy824          392 SSRPPTDHPDYVKITEALEAMRDVAMLINE  421 (518)
Q Consensus       392 ~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~  421 (518)
                      +|+|+++|+|+..|+.|++.++.++..||+
T Consensus       151 ~k~t~~~~~d~~~l~~a~~~~~~~~~~iNe  180 (180)
T smart00325      151 LKHTPEDHEDREDLKKALKAIKELANQVNE  180 (180)
T ss_pred             HHhCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999985

Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.

>KOG3519|consensus

Probab=99.96  E-value=1.1e-29  Score=273.00  Aligned_cols=359  Identities=30%  Similarity=0.392  Sum_probs=285.2

Q ss_pred             EEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccCCCchHHHHHhhhcCCCccccccc-
Q psy824          142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLRRRT-  220 (518)
Q Consensus       142 ~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  220 (518)
                      +.++++-......++.+.+++...+++.....||.+..   ..+++....+.+......+..    ...+......... 
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~rl~i~~~~~~~~----~~~~~~~~~~~~~~  321 (756)
T KOG3519|consen  249 APALKRVVRADMRELGLEKLDAKTVLDESVAEESSGRT---MTLFASESERLIINQKLELLS----APTGPVESAPSDYD  321 (756)
T ss_pred             ccccccceecccccchhhhhhccccchhhhhhhhcccc---chhchhhhhcchhhhhhhccc----cccCcccCcccccc
Confidence            34445555666678899999999999888778887765   556666666554433211111    0111111110000 


Q ss_pred             -----cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q psy824          221 -----SISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLET  295 (518)
Q Consensus       221 -----~~~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~  295 (518)
                           .........+|.++|.|+++||++|+++|..++..|+.++.+....++.+.+..+|+||++|+.+|..|+..|+.
T Consensus       322 ~~~~~~~~~~~~~~~~~~vi~E~l~tE~~Yv~~L~~~~~~yl~~~~k~~~~~~~~~~~~~f~ni~~i~~f~~~fl~~L~~  401 (756)
T KOG3519|consen  322 GYLDAMRPSESLDKKRTKVIKELLDTEKNYVKDLNALCEGYLPPQNKRARGLSVNQLDLLFGNIEDILRFQKEFLKTLEQ  401 (756)
T ss_pred             hhHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhccccHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence                 011234678899999999999999999999999999999766778999999999999999999999999999999


Q ss_pred             hhCCC--CCCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHH--hhcchHHHHHHHHHHHhhccccccCcc
Q psy824          296 KLDWD--APYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFC--CRSLEDKARWLAAFQQERALVEQDRED  371 (518)
Q Consensus       296 ~~~~~--~~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~--~~~~~~~~~fl~~~~~~~~~~~~~~l~  371 (518)
                      ..+..  .+....||.+|+.+.+.|..         |..||++++.+...+  .+++++...|+..|......... +|+
T Consensus       402 ~~~~~~~~~~~~~ig~~fL~~~~~f~~---------ys~yc~~h~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-~L~  471 (756)
T KOG3519|consen  402 QINPELIPPSLSEIGPVFLEQLDVFKI---------YSEYCNNHPKAQKKLSKLKKKKKVKEFLEACNLLQQHSNS-SLS  471 (756)
T ss_pred             hcchhhcchhHhHHHHHHHHhccccee---------echhhhccchHHHHHHHHhhhhhhhhhhhhhhhhhccccC-Cch
Confidence            98755  56678999999999999999         555999999986544  45668888999999887666654 499


Q ss_pred             CCCcchhhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHh---cccCCC
Q psy824          372 GLEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMES----LEKLAAWQQR---VEGWEG  444 (518)
Q Consensus       372 ~~L~~PvQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~----~~~l~~~~~~---i~~~~~  444 (518)
                      +||++|+||+++|||+|+++++.|+.+|.||..+..|+.+++.++..||++++..+.    ...+.+.+..   +.+|++
T Consensus       472 s~l~~pvqri~kYPLll~elld~t~~~~~~~~~l~~a~~~m~~~~~~INe~~~~~e~~~~~~~~~~~~q~~~~~~~~~~~  551 (756)
T KOG3519|consen  472 SFLLKPVQRICKYPLLLNELLDSTPLESSDYVPLSAALPAMKTVASLINEMKRKLESYSSFLDKIAAEQSGSNSLELSEG  551 (756)
T ss_pred             hhhccHHHHhccCchhhhhhhhhccCCcchhhhhhhhhhhhhhHHHHHhhhhccccchhHHHHHhhhhhccchhhhccCC
Confidence            999999999999999999999999999999999999999999999999999999999    6677766666   778888


Q ss_pred             ccccccccceEeeeeEEEEecC-cccceEEEEEeCCeEEEEeeccCCCCceE-EEEEeecCCeeEEEcCCCCCCC
Q psy824          445 EDLIETSSQLIHQGEVIRVTSG-MWTNTITLFLFDHQLVYCKRDILKRNTHV-YKARLNIDTSQIINLPDGKGRT  517 (518)
Q Consensus       445 ~~l~~~~r~ll~~g~l~~~~~~-~~~~~~~~fLF~d~ll~~k~~~~~~~~~~-~k~~i~l~~~~v~~~~d~~~~~  517 (518)
                      ..+......++..|........ .+...++.|||+..+++|++..+.+..+. ++.....+.+.+.+.+++...+
T Consensus       552 ~~~~~~Ss~l~~~~~~~~~~q~~~~~~~~~~~l~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (756)
T KOG3519|consen  552 ELLLDNSSELLLSGPSLKIRQFQSDSQQRQFFLFDNQLVYCKRSSTSRSLLPSFRPRLASDSVDPFDNDGTKPAD  626 (756)
T ss_pred             CcccccccceeeccchhhhhhhhcchhhhhheecccceeEeeccccccccccccCccccccccccccccccCccc
Confidence            7777788899999997665442 23467899999999999998876666555 7888999999988888776654

>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes

Probab=99.95  E-value=4.6e-27  Score=213.12  Aligned_cols=177  Identities=25%  Similarity=0.429  Sum_probs=153.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHh
Q psy824          234 VVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLK  313 (518)
Q Consensus       234 ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~~~ig~~f~~  313 (518)
                      ||+||++||+.|+.+|+.+.+.|..++....+.++..++..+|+|+++|+.+|+.|+..|+.... .......||++|++
T Consensus         1 vi~ELi~tE~~y~~~L~~l~~~~~~~l~~~~~~l~~~~~~~lf~~i~~l~~~h~~ll~~L~~~~~-~~~~~~~i~~if~~   79 (180)
T PF00621_consen    1 VINELIETERSYVEDLEILVEVFLKPLRKRSPLLSEDEIKSLFGNIEELIEIHQQLLESLEERMK-EWSNIQSIGDIFLK   79 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH-TTSSGGGHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHhcchhhhhhHHHHHHHHHHHHHH-hhhccchhhhhhhh
Confidence            68999999999999999999999999984368899999999999999999999999999999773 22457899999999


Q ss_pred             hhcCcCCchhHHHHHHHHHhcchhhHHHHH---HhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHHHHHHhhhh
Q psy824          314 HKSGFHPHLGVTVRHAIKIHCSDKDKWLLF---CCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARC  390 (518)
Q Consensus       314 ~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~---~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~~y~LlL~~  390 (518)
                      +.+.+..         |..||.+++.+...   +.+.+..+..|++.++......... +.++|+.|+||++||+++|++
T Consensus        80 ~~~~~~~---------Y~~Y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-l~~~l~~Piqrl~rY~lll~~  149 (180)
T PF00621_consen   80 FEPFLKV---------YISYCSNYPDALSLLEELRKKNSEFKKFLEEIENSPESKRLS-LSSLLIKPIQRLPRYPLLLKR  149 (180)
T ss_dssp             HTTGGHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHCTTST-HHHHTTHHHHHHHHHHHHHHH
T ss_pred             ccccccc---------eeccchheechhhhhhHHHhhccccccccccccccccccCCC-HHHHHHHhhhHHHHHHHHHHH
Confidence            6664444         99999999887543   3445556888888887754555544 999999999999999999999


Q ss_pred             ccCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q psy824          391 HSSRPPTDHPDYVKITEALEAMRDVAMLINE  421 (518)
Q Consensus       391 l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~  421 (518)
                      |+++|+++|+|+..|+.|+..+++++..+|+
T Consensus       150 llk~t~~~~~d~~~L~~a~~~i~~l~~~in~  180 (180)
T PF00621_consen  150 LLKNTPPDHPDYKSLQKALDQIKELIQHINE  180 (180)
T ss_dssp             HHHTSSTTSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCChhHHHHHHHHHHHHHHHHHhCc
Confidence            9999999999999999999999999999996

Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....

>KOG3522|consensus

Probab=99.94  E-value=9.9e-27  Score=236.68  Aligned_cols=257  Identities=21%  Similarity=0.251  Sum_probs=213.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHH
Q psy824          231 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGET  310 (518)
Q Consensus       231 R~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~~~ig~~  310 (518)
                      |..++.+|+++|++|+..|+.+++.|.+||+++..++.+..++.||.+|.+|+++|..||++|+.+...+. ..+.+|+.
T Consensus         1 r~~v~~~l~~~Eq~yv~sL~t~vd~y~qpL~~~~~l~~~~~~~eif~~i~ell~~he~fl~~l~s~~~~w~-~qq~vga~   79 (925)
T KOG3522|consen    1 RRYVLLQLIDREQSYVESLHTGVDRYVQPLKERKVLIDPRDVDEIFQNIPELLEIHEDFLEQLCSRDQQWD-EQQKVGAS   79 (925)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHhhHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHH
Confidence            45689999999999999999999999999998778888999999999999999999999999999995443 36889999


Q ss_pred             HHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhh-cchHHHHHHHHHHHhhccccccCccCCCcchhhHHHHHHHhhh
Q psy824          311 FLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCR-SLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAAR  389 (518)
Q Consensus       311 f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~-~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~~y~LlL~  389 (518)
                      |+..      +....+.++|+.||+|+.+|-..+.. +.+.|.+|++                ++++|  |+++|.|+|+
T Consensus        80 ~v~~------fSk~~v~~~Y~~y~nn~~~A~~~l~~~~rpaf~~Fl~----------------l~~kP--r~P~y~lll~  135 (925)
T KOG3522|consen   80 FVYS------FSKTAVLAAYSKYVNNFKRAKCALRNKKRPAFSKFLE----------------LMIKP--RFPRYELLLQ  135 (925)
T ss_pred             HHHh------hhHHHHHHHHHHHHhchhHHHHHHHHhcchHHHHHHH----------------HHhcc--CCchHHHHHH
Confidence            9887      33456778899999999988654432 2566666655                78899  9999999999


Q ss_pred             hccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCC--CccccccccceEeeeeEEEEecCc
Q psy824          390 CHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWE--GEDLIETSSQLIHQGEVIRVTSGM  467 (518)
Q Consensus       390 ~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~--~~~l~~~~r~ll~~g~l~~~~~~~  467 (518)
                       ++|+||.+|||+..|+.|+..+++++..+|+.+|..+...++.++.+.|+..-  ..+|..+.|+|+.+..+.......
T Consensus       136 -mlkhtp~~Hpdr~~Lq~al~~~~~~ae~ine~kr~a~~~~e~q~~~rei~~r~el~e~L~ag~r~lLl~dl~se~vy~~  214 (925)
T KOG3522|consen  136 -MLKHTPLDHPDRLILQLALTLLETLAEKINEHKRFADEINELQAALREIEVRSELMEDLGAGRRQLLLQDLVSETVYTG  214 (925)
T ss_pred             -HhhcCCcCCCchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHhhhhhhcc
Confidence             99999999999999999999999999999999999888777776666665321  145777889999998887766666


Q ss_pred             ccceEEEEEeCCeEEEEeecc----CCCC----------ceEEEEEeecCCeeEEEcCCC
Q psy824          468 WTNTITLFLFDHQLVYCKRDI----LKRN----------THVYKARLNIDTSQIINLPDG  513 (518)
Q Consensus       468 ~~~~~~~fLF~d~ll~~k~~~----~~~~----------~~~~k~~i~l~~~~v~~~~d~  513 (518)
                      .++++..|+|+|.|+++.-+.    .++.          +|+++..++|..+.|.....|
T Consensus       215 rk~d~~~~~~rd~i~~~~Lk~~sg~~r~~~t~as~vdt~ky~~lw~~~L~~~~vvks~~g  274 (925)
T KOG3522|consen  215 RKKDRKAFLFRDLIVNTDLKRASGSSRKPSTAASVVDTAKYKLLWKDPLVFADVVKSRAG  274 (925)
T ss_pred             ccchhhheeeeeeeeeeeeeeeeceecCCccccccccccceeeeeccccchhheeeeccc
Confidence            678999999999999987332    1223          899999999999999885444

>COG5422 ROM1 RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]

Probab=99.94  E-value=3.1e-27  Score=239.66  Aligned_cols=285  Identities=20%  Similarity=0.277  Sum_probs=235.9

Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC----HHHHHHHhcCHHHHHHHHHHHHHHHHHh
Q psy824          221 SISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFS----PEQIQTIFGNLEDILAFQSSFLEDLETK  296 (518)
Q Consensus       221 ~~~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~----~~~~~~lF~ni~~i~~~h~~~l~~L~~~  296 (518)
                      ..+++.++.|||++|.|++-||++||++|+.+.+.|++||. ....++    .+.++.+|.|+.+|+.++.+|+++|..+
T Consensus       475 ~~sl~~qe~kRqe~I~evi~ter~FVk~le~lRD~~~K~L~-~sn~Ip~n~r~~Fik~vf~~i~~i~avn~k~~~AL~~r  553 (1175)
T COG5422         475 WESLPKQEIKRQEAIYEVIYTERDFVKDLEYLRDTWIKPLE-ESNIIPENARRNFIKHVFANINEIYAVNSKLLKALTNR  553 (1175)
T ss_pred             HhhCcHHHHhhhhhhhheeeeccchhhhhHHHHHHHHHHHH-HcCcCchhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhc
Confidence            34578899999999999999999999999999999999997 556666    4688999999999999999999999998


Q ss_pred             hCCCCCCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcc
Q psy824          297 LDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFA  376 (518)
Q Consensus       297 ~~~~~~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~  376 (518)
                      +.- .|.+..|||+|+++.|.|.++..|...+.|..|-..-+      ...+..|..|...+.......+.. +++||-+
T Consensus       554 Q~l-sPiv~~I~DifL~~vP~Fepfiky~a~~~yaky~~ere------kS~np~fa~Fd~~v~rl~~s~k~~-ld~yLtk  625 (1175)
T COG5422         554 QCL-SPIVNGIADIFLDYVPKFEPFIKYGASQPYAKYEFERE------KSVNPNFARFDHEVERLDESRKLE-LDGYLTK  625 (1175)
T ss_pred             ccc-cccccchHHHHHhhhhhhhHHHHhhcccchhheeeeec------cccCcchhhhhHHHHhcchhhhhc-ccceecC
Confidence            863 46789999999999999999766666666666554432      345678888887776443333333 9999999


Q ss_pred             hhhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCC----cccccccc
Q psy824          377 PAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEG----EDLIETSS  452 (518)
Q Consensus       377 PvQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~----~~l~~~~r  452 (518)
                      |+-|+.||+||+++++|+|.++.||++++-++++.+++.+..+|-.....++...+..+.+.|- |+.    ..+....|
T Consensus       626 ~~tr~~Ry~lL~e~vlkftd~d~~D~e~i~kv~d~~reFlsrl~~esG~Ae~r~~~~~l~qql~-fk~e~~~lgl~D~~r  704 (1175)
T COG5422         626 PTTRLARYPLLLEEVLKFTDPDNPDTEDIPKVIDMLREFLSRLNFESGKAENRGDLFHLNQQLL-FKPEYVNLGLNDEYR  704 (1175)
T ss_pred             CcccchhhHHHHhhhcccCCCCCcchhHhHHHHHHHHHHHHHHhHhhcccccchhhhhhhhhhc-cCchhhcccccchhH
Confidence            9999999999999999999999999999999999999999999999999999888888877774 332    34556679


Q ss_pred             ceEeeeeEEEEecCcc----cceEEEEEeCCeEEEEeeccC--CCCceEEEEEeecCCeeEEEcCCCCC
Q psy824          453 QLIHQGEVIRVTSGMW----TNTITLFLFDHQLVYCKRDIL--KRNTHVYKARLNIDTSQIINLPDGKG  515 (518)
Q Consensus       453 ~ll~~g~l~~~~~~~~----~~~~~~fLF~d~ll~~k~~~~--~~~~~~~k~~i~l~~~~v~~~~d~~~  515 (518)
                      ++|+.|.+.+....+.    ..+..+||+++++++||.+..  .+...++..+|||.-+.+.-.+|.-+
T Consensus       705 kii~kgvlk~ka~~~td~s~~~di~f~llDn~ll~~Kak~vnkw~~hkvfqrpipl~ll~i~~~eDsp~  773 (1175)
T COG5422         705 KIIFKGVLKRKAKSKTDGSLRGDIQFFLLDNMLLFCKAKAVNKWRQHKVFQRPIPLELLFISPDEDSPD  773 (1175)
T ss_pred             HHHHhhhhhhhhhccCCcccccceeeeehhhHHHHhcccchhhhhhceeecCCCcchhhccccccCCch
Confidence            9999999877655432    448899999999999998765  33567888999999888876666543

>KOG4226|consensus

Probab=99.90  E-value=8e-24  Score=188.30  Aligned_cols=144  Identities=22%  Similarity=0.416  Sum_probs=111.7

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCCCCCCCCCccccCCCccccccc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISKSLKRIRPHHALRRS   84 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (518)
                      ..+-|++.|.|.|+.++||++.+|+.|.|+++..+|||+|..+|++||||++||.+.......-+.+.            
T Consensus       106 ~~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~ds~~gd~~s~------------  173 (379)
T KOG4226|consen  106 LNTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVDSAAGDSPSF------------  173 (379)
T ss_pred             cCCceEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceehhccccccCCccc------------
Confidence            34568999999999999999999999999999999999999999999999999987643322100000            


Q ss_pred             cCCCCCcccCCccccCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCccceeEEEEeecCCCCCCCCCCCCCCCEE
Q psy824           85 VSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVI  164 (518)
Q Consensus        85 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~eL~~~~g~~i  164 (518)
                                  .+..+.+.                         ....+.......+.|||.|.+.++.||+|++||.+
T Consensus       174 ------------~~~~~~A~-------------------------a~n~~~s~vl~vVvaLYsFsssndeELsFeKGerl  216 (379)
T KOG4226|consen  174 ------------LSLRKAAS-------------------------ASNGQGSRVLHVVVALYSFSSSNDEELSFEKGERL  216 (379)
T ss_pred             ------------eecchhhc-------------------------ccCCCCceEEEEEEEEecccCCChhhcccccCcee
Confidence                        00000000                         00001112456789999999999999999999999


Q ss_pred             EEEec--CCCCeEEEE-ECCeeEEEcCCCEEEcccC
Q psy824          165 EVLDT--LDRDWWWGT-RGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       165 ~v~~~--~~~~w~~~~-~~g~~G~~P~~~v~~~~~~  197 (518)
                      .|+++  .|++||.++ ..|+.|++|.|||+.+.+.
T Consensus       217 eivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~  252 (379)
T KOG4226|consen  217 EIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDG  252 (379)
T ss_pred             EeccCCCCCchHHhhcccCCccceeecceEEEeccC
Confidence            99987  468999999 8999999999999988754

>KOG4348|consensus

Probab=99.90  E-value=2.6e-24  Score=203.03  Aligned_cols=191  Identities=20%  Similarity=0.290  Sum_probs=120.5

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCCCCCCCCCccccCCCccccccc-
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISKSLKRIRPHHALRRS-   84 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-   84 (518)
                      ..+|+|+|.|.+++++||.|+.||+|.|+...++|||.|.++|+.|+||++||.+-..+..+...++.+......+++. 
T Consensus       100 ~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~~sde~~~aqd~~~S~stlagst  179 (627)
T KOG4348|consen  100 ARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPTPSDESAAAQDPAASASTLAGST  179 (627)
T ss_pred             ceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCCCCcchhhhcCcccchhhhcCcC
Confidence            4689999999999999999999999999999999999999999999999999997766555433333332222222211 


Q ss_pred             ----------------cCCCCCcccCCccccCCCC-----CCCCCCCCCCCCCC--CCcccCCCCCccC----CCCCCcc
Q psy824           85 ----------------VSQPLGINELSPLLRRKPI-----GTRPGDGTNSLCCS--DDELLSDSESSVT----SLGMDED  137 (518)
Q Consensus        85 ----------------~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~  137 (518)
                                      +.++..+.+.....-.+..     .....+.....+..  ....++.+..++.    .....-.
T Consensus       180 ~~~ps~s~~SE~a~gsv~qPKkI~g~gfgdIfk~~pVklr~rt~~sete~~p~~~~i~~~l~asT~s~d~tktd~~~~tK  259 (627)
T KOG4348|consen  180 ARTPSKSIGSEVAMGSVTQPKKIDGTGFGDIFKPAPVKLRLRTKFSETEKKPEKPFISSALSASTQSVDITKTDTAETTK  259 (627)
T ss_pred             CCCCcccccchhhcccccCcccccCCCcccccCCccceecccccccccccccccchhhhccCccccCccccccccccchh
Confidence                            1122111111000000000     00000000000000  0000111110000    0011113


Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecC--CCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ...+|+++|.|++++++||.|+.||+|.++.+.  +.|||+|+++|+.|.||.|||+.+..
T Consensus       260 tKeycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~~  320 (627)
T KOG4348|consen  260 TKEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQV  320 (627)
T ss_pred             hhhheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcCC
Confidence            356899999999999999999999999988763  58999999999999999999998873

>KOG1029|consensus

Probab=99.89  E-value=1.2e-23  Score=210.79  Aligned_cols=180  Identities=24%  Similarity=0.363  Sum_probs=129.8

Q ss_pred             EEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCCCCCCCCCccccCC-----Cccccccc
Q psy824           10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISKSLKRIR-----PHHALRRS   84 (518)
Q Consensus        10 ~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~   84 (518)
                      ..+++|.+....+|.|..||.|.|+++ |++||.|+++++.|.||++|...+.+..+...++-.+..     -+.++...
T Consensus       910 a~~~~~e~vEq~dlt~~egd~iLvtek-dgeww~gt~~~r~gifPan~y~r~~~q~gs~Tp~k~g~~~kkpeiAqVia~y  988 (1118)
T KOG1029|consen  910 AVYPYFEAVEQGDLTFHEGDEILVTEK-DGEWWTGTCGDREGIFPANYYVRPKDQEGSGTPPKQGPTPKKPEIAQVIADY  988 (1118)
T ss_pred             EEecccccccCCCccccccceEEEeec-cCceeccccCCccccccccceeeehhccCCCCCCCCCCCCCCchhhhhhhhh
Confidence            345566668999999999999999988 668999999999999998855544333332222211221     11122111


Q ss_pred             cCCCCCccc-------CCccccCCCCCCCCCC--------CCCCCCCCCCcccCCCCCccCCCCCCccceeEEEEeecCC
Q psy824           85 VSQPLGINE-------LSPLLRRKPIGTRPGD--------GTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHV  149 (518)
Q Consensus        85 ~~~~~~~~~-------l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  149 (518)
                      +  .++.++       |+--....+.+||.+.        ..+++|+.+..++.++.+..++..   .+++.++|+|||.
T Consensus       989 v--As~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s~raTPa~---~~v~qviamYdY~ 1063 (1118)
T KOG1029|consen  989 V--ASGPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGSGRATPAT---RPVCQVIAMYDYE 1063 (1118)
T ss_pred             h--ccCchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccCCCCcCCCCC---CccceeEEeeccc
Confidence            1  133333       3333444556788753        236889999999888754444332   2367899999999


Q ss_pred             CCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcc
Q psy824          150 AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV  195 (518)
Q Consensus       150 ~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~  195 (518)
                      |+++|||+|.+||+|.|+.+++++||.|+.+|..|+||+|||...+
T Consensus      1064 AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng~sGLFPSNYV~k~t 1109 (1118)
T KOG1029|consen 1064 AQNDDELSFKKGDIINVLNKDEPEWWSGERNGKSGLFPSNYVQKQT 1109 (1118)
T ss_pred             cCCcccccccCCCEEEecCCCChhhhcccccCccccCccccccccc
Confidence            9999999999999999999999999999999999999999995544

>KOG4225|consensus

Probab=99.86  E-value=2e-21  Score=184.54  Aligned_cols=192  Identities=22%  Similarity=0.305  Sum_probs=120.7

Q ss_pred             CccCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCC----CCCCCCC-------
Q psy824            2 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSIS----PNCDISK-------   70 (518)
Q Consensus         2 d~~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~----~~~~~~~-------   70 (518)
                      ++...+.|+|+|+|.|++..||+|.+||+|.|+.+.|.+|+.|+.+|+.|+||.+||+....    .+....+       
T Consensus       226 ~~~~~~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~e~~qP~~~~P~q~~~~g  305 (489)
T KOG4225|consen  226 TEKPKRAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPREKAQPARPPPQQVLEQG  305 (489)
T ss_pred             CccccchhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCcccccCcCCCCcccccccc
Confidence            34556679999999999999999999999999999999999999999999999999995443    1221111       


Q ss_pred             --ccccCCCcc-------------ccccccCC-------C-CCcccCCccccCCCCCCCC----CCCC--CCCCCCCCcc
Q psy824           71 --SLKRIRPHH-------------ALRRSVSQ-------P-LGINELSPLLRRKPIGTRP----GDGT--NSLCCSDDEL  121 (518)
Q Consensus        71 --~~~~~~~~~-------------~~~~~~~~-------~-~~~~~l~~~~~~~~~~~~~----~~~~--~~~~~~~~~~  121 (518)
                        .....++..             .+.+.+..       + .++.+.+|.+++..+....    ....  ...+.....+
T Consensus       306 ~a~A~y~F~~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~~~~~~~~~~~~~~~p~~p~~s~~~  385 (489)
T KOG4225|consen  306 EAIAKYNFNADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVIKSPKLELPLDYPDLPIPPRSSNEL  385 (489)
T ss_pred             cccccCCCCCCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhhhhccccccccccCCCCCCcccchhh
Confidence              000001000             01111110       0 3445566654443322110    0000  0000000000


Q ss_pred             ---------------cCCCCC--------------ccCCCCCCccceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCC
Q psy824          122 ---------------LSDSES--------------SVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDR  172 (518)
Q Consensus       122 ---------------~~~~~~--------------~~~~~~~~~~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~  172 (518)
                                     ...+..              .+.....+......++|||.|.+++++||.|..||+|.|+++.|+
T Consensus       386 ~~~~~~s~~~~~~~~~t~~~~q~~~n~~qepr~~~~~~~~~qt~~~~l~yrAly~Y~pqnedeLEl~egDii~VmeKcdd  465 (489)
T KOG4225|consen  386 RPLSEDSMKNAWPQTHTQSSTQPPENFPQEPRVTEKNDAHSQTSSEPLKYRALYSYRPQNEDELELREGDIIDVMEKCDD  465 (489)
T ss_pred             cccccchhhhcccccccccccCCCCCcccccccccccCcccCCCCCcccceeccccCCCCchhheeccCCEEeeeecccC
Confidence                           000000              000001111223447999999999999999999999999999999


Q ss_pred             CeEEE--EECCeeEEEcCCCEEE
Q psy824          173 DWWWG--TRGEASGWFPSAFVRL  193 (518)
Q Consensus       173 ~w~~~--~~~g~~G~~P~~~v~~  193 (518)
                      ||..|  +..|..|.||.|||+.
T Consensus       466 gWfvGts~rtg~fGtFPgnyV~~  488 (489)
T KOG4225|consen  466 GWFVGTSRRTGKFGTFPGNYVKR  488 (489)
T ss_pred             cceeccceecccccccCcccccc
Confidence            99999  5899999999999974

>KOG0689|consensus

Probab=99.84  E-value=5.3e-22  Score=195.71  Aligned_cols=254  Identities=24%  Similarity=0.274  Sum_probs=197.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---HHHHHHHhcCHHHHHHHHHH-HHHHHHHhhCCCCCC
Q psy824          228 DQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFS---PEQIQTIFGNLEDILAFQSS-FLEDLETKLDWDAPY  303 (518)
Q Consensus       228 ~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~---~~~~~~lF~ni~~i~~~h~~-~l~~L~~~~~~~~~~  303 (518)
                      -.++..++.|++.||..||++|..+...|+..+...  -++   ...-+.||+||.+|+.+|.. |+..++.+...    
T Consensus        60 ~~k~~~v~~e~iaTE~~yv~~l~~~~~~y~~~~~~~--~lp~~lrg~~~iifgni~~i~~~h~~~fl~e~e~~~r~----  133 (448)
T KOG0689|consen   60 LKKRSFVLDELIATEVDYVKDLKSVVENYIELLDAE--DLPEDLRGKDKIIFGNIKEIYEFHKKEFLPELERCERD----  133 (448)
T ss_pred             hhhhHHHHHHHHHHHHhhhhcccccccccccccccc--CCChhccCCceeeechHHHHHHhhcccCcchHHHhhhC----
Confidence            356788999999999999999999999999988532  222   13367899999999999998 59999988752    


Q ss_pred             CCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHHH
Q psy824          304 KSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELA  383 (518)
Q Consensus       304 ~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~~  383 (518)
                      ....|.+|++|...|..        .|..||.|.++. .... ..-....|++.++.  .......+.+||++||||+.+
T Consensus       134 ~~~~~~~f~kh~~k~~~--------~y~~y~q~kp~s-~~~~-~~~~~~~~f~~~~~--~~~~~l~l~~~l~kPiQR~~k  201 (448)
T KOG0689|consen  134 PLELGQAFAKHERKNSV--------LYVTYCQNKPKS-DYLL-AEYDNEAFFQEYQT--QLGHKLDLSSYLIKPVQRIMK  201 (448)
T ss_pred             HHHHHHHHHHHHHHhhh--------hhhhhhcCCCCC-cccc-eecccchhhHHHhh--hcccccccchhhhhhhHHHHH
Confidence            36799999999988863        389999998865 1110 11122346666654  334444599999999999999


Q ss_pred             HHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccccceEeeeeEEEE
Q psy824          384 RMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRV  463 (518)
Q Consensus       384 y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~r~ll~~g~l~~~  463 (518)
                      |.+||+++++.+...-.|...|.+|.+.|..+.+.+|+++           ...++.|+.+ ++... +++++++++.+.
T Consensus       202 YqlLL~~~~k~~~~~~~d~~~l~~a~e~m~~~~~~~~d~~-----------~~~~l~g~e~-~l~~q-G~l~~qd~f~v~  268 (448)
T KOG0689|consen  202 YQLLLQDFLKFCEKAGDDTDALCKAEEVMRFVLKRCNDMM-----------QVGRLQGFEG-DLKAQ-GKLRRQDEFDVS  268 (448)
T ss_pred             HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhHhhh-----------ccchhccccc-chHhh-ccccccCcccee
Confidence            9999999999999888999999999999999999887743           2246667765 35544 789999998776


Q ss_pred             ecCc-ccceEEEEEeCCeEEEEeeccC--CCCceEEEEEeecCCeeEEEcCC
Q psy824          464 TSGM-WTNTITLFLFDHQLVYCKRDIL--KRNTHVYKARLNIDTSQIINLPD  512 (518)
Q Consensus       464 ~~~~-~~~~~~~fLF~d~ll~~k~~~~--~~~~~~~k~~i~l~~~~v~~~~d  512 (518)
                      .... ..+.+.+|||.-++||+|....  ....|.||..|.++++.....-+
T Consensus       269 ~~~~~~~~~R~vflFe~~v~Fse~~~~~~~~~~y~yk~~ik~~~lgle~n~~  320 (448)
T KOG0689|consen  269 HGRAGKKKDRRVFLFERLVVFSKLRKPESGTETYVYKQHIKVNDLGLEENND  320 (448)
T ss_pred             eccccccchhhhhhhhhhhhhhhhhcCCCCCcceeeecchhhhheeeeccCC
Confidence            5543 2568999999999999996642  23689999999999999865443

>KOG3531|consensus

Probab=99.83  E-value=4.4e-22  Score=201.90  Aligned_cols=263  Identities=16%  Similarity=0.258  Sum_probs=215.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhh-CCCCCC------C
Q psy824          232 SRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKL-DWDAPY------K  304 (518)
Q Consensus       232 ~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~-~~~~~~------~  304 (518)
                      ..+++||..|||.|.++|.++...|...+- .....+......+|.|++.|.++|+.||+.+++++ .|++..      .
T Consensus       535 yF~~kel~~tERty~kdleV~tt~Frst~v-~~dam~~~~~s~l~~~~~pl~k~h~~fLk~ieeria~weGrsnani~~~  613 (1036)
T KOG3531|consen  535 YFIVKELSDTERTYLKDLEVITTWFRSTVV-KEDAMPNALKSLLFHNSTPLTKFHEGFLKEIEERIALWEGRSNANIVIE  613 (1036)
T ss_pred             eeeecccccccccchhccceeeeeecceee-cCcccccchhhhhccCCChhhHHHHHHHHHHHHHHHhccCCCCCceeee
Confidence            458999999999999999999988877774 44567778889999999999999999999999999 565432      2


Q ss_pred             CchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhc---chHHHHHHHHHHHhhccccccCccCCCcchhhHH
Q psy824          305 SCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRS---LEDKARWLAAFQQERALVEQDREDGLEFAPAAKE  381 (518)
Q Consensus       305 ~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~---~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl  381 (518)
                      +.||++.++++-.+++         |..|...|...+..+...   .+.+..+...++..+.|  ..+++.||++|++|+
T Consensus       614 ~~igDVmLk~m~~l~i---------~~~~~q~h~~~l~~~t~~~k~~~r~~~v~kefelqkvc--yLP~~~fllkpL~rl  682 (1036)
T KOG3531|consen  614 QRIGDVMLKNMRSLKI---------TTTTTQRHAETLTTLTTTSKVLTRLEAVYKEFELQKVC--YLPLNTFLLKPLSRL  682 (1036)
T ss_pred             eccCCcchhhhhccch---------hhhhHHhHHHHHHHHhhcchhhhhHHhhhccHHhhhcc--ccccchhhhccccHH
Confidence            5689999999988888         666666666665444333   34444455555544333  235999999999999


Q ss_pred             HHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccccceEeeeeEE
Q psy824          382 LARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVI  461 (518)
Q Consensus       382 ~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~r~ll~~g~l~  461 (518)
                      +.|.++|+.|+.+.+++|.||++...+...+-+....+...+-+.|   +|.+|++.+.+.  ..|+.++|+||++|.+.
T Consensus       683 lhyq~~LeRLc~~~~~~h~d~ad~~a~~~~~~~~tk~iqs~m~~~e---~l~Elkrdl~s~--e~LV~p~rE~ir~g~ll  757 (1036)
T KOG3531|consen  683 LHYQLALERLCGHYSPTHEDFADCKAKPNPITEPTKPLQSVMIRTE---KLRELKRDLASI--ENLVHPGREFIRSGCLL  757 (1036)
T ss_pred             HHHHHHHHHhhcccCCCccchHHHhhcccccccccccccccchhHH---HHHHHHHhhhcc--ccccCcchhhhhcCCch
Confidence            9999999999999999999999999999888888888877666666   889999999876  56899999999999999


Q ss_pred             EEecCcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCC
Q psy824          462 RVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG  513 (518)
Q Consensus       462 ~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~  513 (518)
                      +.+. +.-+.+.+|||+|++|++.+.....+.|.+.+.+|+. +.+++.+++
T Consensus       758 K~sk-kgLqqrmfFLfsdillytsk~~~~~~~fri~g~lP~~-l~~en~en~  807 (1036)
T KOG3531|consen  758 KLSK-KGLQQRMFFLFSDILLYTSKGPDVQKCFRINGDLPLT-LTMENSENE  807 (1036)
T ss_pred             hhcc-ccchhhhhhhhhhhheeccCCCChhheeEeccCCceE-eeeeccccc
Confidence            9864 4467899999999999998775666789999999999 999988774

>KOG4240|consensus

Probab=99.82  E-value=1.7e-21  Score=205.53  Aligned_cols=252  Identities=25%  Similarity=0.355  Sum_probs=190.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----CCCCCHHHHHHHhcCHHHHHHHHHH-HHHHHHHhhCCCCC
Q psy824          229 QVRSRVVRELINTERDFVKVLHDVSEGYLAECRRR-----NDMFSPEQIQTIFGNLEDILAFQSS-FLEDLETKLDWDAP  302 (518)
Q Consensus       229 ~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~-----~~~l~~~~~~~lF~ni~~i~~~h~~-~l~~L~~~~~~~~~  302 (518)
                      .++..++.|+|+||+.|+++|....+.|...+...     .+.|.  ....||+|+++|+.+|.. ||..|++.-..   
T Consensus       631 rl~~~~m~ellqterayv~~L~~~l~~y~~e~d~~~~~i~~~~Ln--k~~~ifgnmeeiy~fhn~~~L~eLe~y~~~---  705 (1025)
T KOG4240|consen  631 RLKRHVMRELLQTERAYVRDLEECLEGYLAEMDSPMKEILPPLLN--KKEIIFGNMEEIYEFHNDIFLSELEKYEQL---  705 (1025)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhccccccc--hHHHHHhhHHHHHHHHhhHHHHHhhhhccC---
Confidence            44577999999999999999999999998877431     12333  778899999999999997 89999998642   


Q ss_pred             CCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHH
Q psy824          303 YKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKEL  382 (518)
Q Consensus       303 ~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~  382 (518)
                       ...||.||+++++.|..         |..||.|-+..-......  .--.|+..|+...... . .+.++|++||||++
T Consensus       706 -pE~Vg~~fle~~d~fql---------y~~Yc~nke~S~ql~~~~--a~~~ff~e~qr~~~l~-l-~~~S~l~kpvqrit  771 (1025)
T KOG4240|consen  706 -PEDVGHCFLERADDFQL---------YAKYCQNKELSNQLIRLH--AGCSFFQEIQRRHGLE-L-SISSYLIKPVQRIT  771 (1025)
T ss_pred             -HHHHHHHHHHHHHHHHH---------HHHHHhCCcchHHHHHhc--ccccccHHHHHHhhhh-h-hhHHHHhHHHHHHH
Confidence             36799999999999955         999999977653222111  1112566666543322 2 49999999999999


Q ss_pred             HHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccccceEeeeeEEE
Q psy824          383 ARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIR  462 (518)
Q Consensus       383 ~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~r~ll~~g~l~~  462 (518)
                      +|.|+||+++++..+   -...|++|++.|-.+...+|+.+.-           ..|+|+.+ +|-. -+.+|.+|.+.+
T Consensus       772 kYqlllkell~~c~e---~~~~lkd~l~~ml~v~k~~nd~mh~-----------~~~~~~d~-nl~~-lg~~~~q~~f~v  835 (1025)
T KOG4240|consen  772 KYQLLLKELLKCCCE---GTGDLKDALEVMLSVPKKVNDSMHL-----------IALEGYDG-NLDE-LGKLIMQDSFSV  835 (1025)
T ss_pred             HHHHHHHHHHHhhhh---chHHHHHHHHHHHhhhhhcccccCH-----------HHHhhhhh-hHHH-HHHHHhhcccee
Confidence            999999999995443   3468999999999999999995521           33444432 2333 368899999887


Q ss_pred             EecC---cccceEEEEEeCCeEEEEeecc--CCCCceEEEEEeecCCeeEEEcCCCCC
Q psy824          463 VTSG---MWTNTITLFLFDHQLVYCKRDI--LKRNTHVYKARLNIDTSQIINLPDGKG  515 (518)
Q Consensus       463 ~~~~---~~~~~~~~fLF~d~ll~~k~~~--~~~~~~~~k~~i~l~~~~v~~~~d~~~  515 (518)
                      ++.+   +...+|++|||.-.|||||+..  .++.+|.+++.++++.+.|.+.-.|+.
T Consensus       836 w~~k~l~rk~~erhlfl~ei~ivf~K~~~~s~~~~~~~~~~~l~~~e~gite~v~Gd~  893 (1025)
T KOG4240|consen  836 WKPKALARKGMERHLFLFEISIVFCKRIEESSERIKYVSKKKLPMSEVGITEHVEGDP  893 (1025)
T ss_pred             ecHHHHhhhhHHHHHHHHHHHHHHHHHHHhccCCCcchhhccCCHHhhcchhhcccCc
Confidence            7432   2356899999999999999653  335678888889999999998777764

>KOG4348|consensus

Probab=99.82  E-value=2e-21  Score=183.67  Aligned_cols=157  Identities=20%  Similarity=0.292  Sum_probs=112.0

Q ss_pred             EEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCCCCCCCCCccccCCCccccccccCC
Q psy824            8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISKSLKRIRPHHALRRSVSQ   87 (518)
Q Consensus         8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (518)
                      -+.+-|||.|+.++||.++.|++|+.+.+.++|||.|+++|+.|.||.++|.+....--+-....+      ..+....+
T Consensus         3 d~ive~dy~a~hddelti~vgeii~nvkk~e~gw~egelngrrg~fpdnfV~eik~e~k~d~l~nk------~~r~~l~q   76 (627)
T KOG4348|consen    3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLEEGWLEGELNGRRGQFPDNFVVEIKVEFKDDDLVNK------LSRDSLVQ   76 (627)
T ss_pred             ceeeecccccccCceeeEeHHHHHHhhhhhccceeeceeccccccCCchhhhhhhhhccccccccc------ccccchhh
Confidence            367789999999999999999999999999999999999999999998888865322100000000      00000000


Q ss_pred             CCCcccCCccccCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCccceeEEEEeecCCCCCCCCCCCCCCCEEEEE
Q psy824           88 PLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVL  167 (518)
Q Consensus        88 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~  167 (518)
                      -.+.+.|...                            ..-.............|.+.|.|.+++++||.|+.||+|.|+
T Consensus        77 ~~s~n~l~~~----------------------------q~v~rtn~~~q~~~r~c~v~f~Y~pqndDELelkVGDiIeli  128 (627)
T KOG4348|consen   77 MTSRNPLTVH----------------------------QQVERTNPPPQPQARICVVTFAYSPQNDDELELKVGDIIELI  128 (627)
T ss_pred             cccCCCcccc----------------------------CcccccCCCCCccceeEEEEEeecCCCCceeeeeeccHHHhh
Confidence            1111111100                            000000111223457899999999999999999999999999


Q ss_pred             ecCCCCeEEEEECCeeEEEcCCCEEEcccCC
Q psy824          168 DTLDRDWWWGTRGEASGWFPSAFVRLRVSQE  198 (518)
Q Consensus       168 ~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~  198 (518)
                      .....|||.|.++|+.|+||.|||..+....
T Consensus       129 ~eVEeGWw~G~Lngk~GmFPsNFVkel~~~s  159 (627)
T KOG4348|consen  129 SEVEEGWWKGKLNGKVGMFPSNFVKELPTPS  159 (627)
T ss_pred             hHhhhhhhhceecCcccccchhhceecCCCC
Confidence            9999999999999999999999999876543

>KOG1029|consensus

Probab=99.81  E-value=2e-20  Score=187.97  Aligned_cols=168  Identities=21%  Similarity=0.432  Sum_probs=109.7

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEec--CCCeeEEEeCCeeEEEEeeeeeccCCCCCCCCCccccCCCcccccc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEAFEHLSQIIINHSISPNCDISKSLKRIRPHHALRR   83 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~--~~~Ww~g~~~~~~g~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~   83 (518)
                      .+.|+|||.|.|.+.+||+|..||+|.|-+..  ++||..|+++|++||||.+||+.......     ..+..|...++.
T Consensus       693 ~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~~~e~-----p~~v~Pv~~l~~  767 (1118)
T KOG1029|consen  693 TVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIPAVET-----PGGVPPVQNLPP  767 (1118)
T ss_pred             eEEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcccCCC-----CCCCCchhcCCC
Confidence            67899999999999999999999999997654  37999999999999999999996543221     111111111111


Q ss_pred             ccCCCCCcccCCc--cccCCCCC-CCCCCCCCCCCCCCCcccCCCCCccCCCCCCccceeEEEEeecCCCCCCCCCCCCC
Q psy824           84 SVSQPLGINELSP--LLRRKPIG-TRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRA  160 (518)
Q Consensus        84 ~~~~~~~~~~l~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~eL~~~~  160 (518)
                      ......+.++...  ......+. ...+.+     +....        .+..+..+....+|.|+|.|.+..+++|+|.+
T Consensus       768 ~~~psas~nq~a~~ad~~~~~~n~~~~t~~-----aA~p~--------~tapg~~eve~lq~iA~y~wrakke~dLsFsk  834 (1118)
T KOG1029|consen  768 TMTPSASVNQIAVVADTKNESANAMGLTEG-----AAPPA--------LTAPGQGEVEILQAIALYPWRAKKENDLSFSK  834 (1118)
T ss_pred             CCCcccccccceeecccccchhhccCCCCC-----CCCcc--------ccCCCchhhhhhhHHhhccccccccccccccC
Confidence            1111111111100  00000000 000000     00000        00111222334578999999999999999999


Q ss_pred             CCEEEEEecCCCCeEEEEECCeeEEEcCCCEE
Q psy824          161 GDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR  192 (518)
Q Consensus       161 g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~  192 (518)
                      ||+|+|+++.+ .||.|...|..||||.+||+
T Consensus       835 gd~I~Vlekqe-mwW~G~v~g~~GwFPksYVk  865 (1118)
T KOG1029|consen  835 GDTITVLEKQE-MWWFGEVAGEIGWFPKSYVK  865 (1118)
T ss_pred             CCeeeeehhcc-ceecccccCccCcCcHHhhh
Confidence            99999999865 79999999999999999999

>KOG3524|consensus

Probab=99.80  E-value=4.1e-20  Score=184.72  Aligned_cols=267  Identities=20%  Similarity=0.235  Sum_probs=212.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCC
Q psy824          226 SNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRR----RNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDA  301 (518)
Q Consensus       226 ~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~----~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~  301 (518)
                      +....|-.+-.++..||..|+..|+.+.+.|..++..    ..+++.+.++.++|+|+++|..+|++..+.|......|.
T Consensus       380 sk~s~r~~~~~~~y~tesnyv~il~Ti~~lf~~kleei~e~~~pil~~~eiktifgn~l~I~~vh~k~~D~l~~l~~nw~  459 (850)
T KOG3524|consen  380 SKLSLRVKFKEALYCTESNYVFILRTIVALFFGKLEEILELHEPILARLEIKTIFGNTLLIVVVHKKNDDKLLDLAQNWI  459 (850)
T ss_pred             hhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCCcccCchhhcccccCchhhhhhhccchHHHHHHHHhhH
Confidence            4556688899999999999999999999988665531    567888999999999999999999999888888763222


Q ss_pred             CCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHH
Q psy824          302 PYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKE  381 (518)
Q Consensus       302 ~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl  381 (518)
                      .    ..+...+..+   .         |.++...+...+.+|.+.++.|.+|++.-+..+.|.++. +..+++.||||+
T Consensus       460 e----~k~el~kayp---p---------yvnffet~ke~~~~cdre~prfhaflKinq~kpecgRq~-l~dlmirpvqrl  522 (850)
T KOG3524|consen  460 E----AKEELKKAYP---P---------YVNFFETIKELFDKCDRENPRFHAFLKINQSKPECGRQK-LTDLMIRPVQRL  522 (850)
T ss_pred             H----HHHHHHHhcc---c---------hhhHHHHhHHHHHHHhccchHHHHHHHccccchhhhhhc-ccchhccchhhh
Confidence            2    1122222222   1         555566666778889999999999999888888888887 999999999999


Q ss_pred             HHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccccceEeeeeEE
Q psy824          382 LARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVI  461 (518)
Q Consensus       382 ~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~r~ll~~g~l~  461 (518)
                      +--.|||++|.|  ..+.+|+..+++|+.+++++..++|+-+++.++.......-..|+|+++ .|+..+|.||..-.+.
T Consensus       523 psvilllndl~k--~s~N~dk~~leea~kaikev~khInedKrkte~~~~ifdkf~diegcpa-~lvssnrsfi~~lev~  599 (850)
T KOG3524|consen  523 PSVILLLNDMAK--KSDNKDKNNLEEAAKAIKEVLKHINEDKRKTENFISIFDKFTDIEGCPA-ILVSSNRSFIRELEVS  599 (850)
T ss_pred             hHHHHHHHHHHh--hccCcchhhHHHhhhhHHHHHHHhchhHHHHHHHHHHHHHHHhhhcCch-hheeccchHHHHhhhh
Confidence            999999999999  4588999999999999999999999999999999999998899999876 4788889998877663


Q ss_pred             -EEec-Cc-ccceEEEEEeCCeEEEEeeccC-----------CCCceEEEEEeecCCee-EEEcCC
Q psy824          462 -RVTS-GM-WTNTITLFLFDHQLVYCKRDIL-----------KRNTHVYKARLNIDTSQ-IINLPD  512 (518)
Q Consensus       462 -~~~~-~~-~~~~~~~fLF~d~ll~~k~~~~-----------~~~~~~~k~~i~l~~~~-v~~~~d  512 (518)
                       .+.. +. ......||||+|++++|+++..           .+..|.+-..|+|+.|. |.||..
T Consensus       600 i~l~~~~~~rg~~~~l~lf~dvlei~k~r~~~~~tF~S~hs~tr~p~KhI~li~LntIr~V~dIrE  665 (850)
T KOG3524|consen  600 IALTSPGLQRGAKMKLFLFHDVLEITKIRLARHASFASLHSRQRRPYKHIDLIQLNTIRSVFDIRE  665 (850)
T ss_pred             hhhcCcccccccceeeehhhhHHHHHHHhHhhhccccCCCCCCCCcccceeeccHHHHHHHhhhhh
Confidence             2211 11 2346789999999999997621           22347777889999887 555553

>KOG4226|consensus

Probab=99.77  E-value=1e-18  Score=155.87  Aligned_cols=160  Identities=24%  Similarity=0.419  Sum_probs=105.4

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCC-eeEEEEeeeeeccCCCCCCCCCccccCCCccccccc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-AFEHLSQIIINHSISPNCDISKSLKRIRPHHALRRS   84 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~-~~g~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (518)
                      ..+++|.|||.|+.+.||.+++.+.+-+++. ...||+.+... +.|+.|++||+...+..-.        .-.+.+++ 
T Consensus         4 ~~~vvak~dy~aq~~qeldikkner~~lldd-sk~wwrvrns~n~tgyvpsnyverkn~~~~~--------si~knlkd-   73 (379)
T KOG4226|consen    4 EVIVVAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNSANRTGYVPSNYVERKNSLKKG--------SIVKNLKD-   73 (379)
T ss_pred             EEEEEEEechhcccchhccccccceEEEEcC-CccceeeecccccCCcccchhhhcccchhhh--------HHHHhhhh-
Confidence            4568999999999999999999999999865 46899998764 5699999999854321110        00000100 


Q ss_pred             cCCCCCcccCCccccCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCccceeEEEEeecCCCCCCCCCCCCCCCEE
Q psy824           85 VSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVI  164 (518)
Q Consensus        85 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~eL~~~~g~~i  164 (518)
                         ..|+.     .+.++             +......+++...--+..........|.+.|.|.|+.++||++-+|+.|
T Consensus        74 ---~~g~k-----t~~k~-------------s~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv  132 (379)
T KOG4226|consen   74 ---TLGLK-----TRRKT-------------SARDASPSPSTDAEYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRV  132 (379)
T ss_pred             ---ccccc-----cccCC-------------CccccCCCCCccccCCcchhhhcCCceEEEEeeccccccccccccCcEE
Confidence               00110     00000             0000000011000000011112234578889999999999999999999


Q ss_pred             EEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          165 EVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       165 ~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      .|+++..+|||.|..+|+.||||+|||.....
T Consensus       133 ~vmEKssDGWWrG~~ng~VGWFPSNYv~E~~d  164 (379)
T KOG4226|consen  133 TVMEKSSDGWWRGSYNGQVGWFPSNYVTEEVD  164 (379)
T ss_pred             EEEEeccCcceecccCCeeccccccceehhcc
Confidence            99999999999999999999999999986543

>KOG4792|consensus

Probab=99.75  E-value=3.3e-18  Score=148.68  Aligned_cols=164  Identities=20%  Similarity=0.340  Sum_probs=115.2

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC-CeeEEEEeeeeeccCCCCCCCCCccccCCCccccc
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG-EAFEHLSQIIINHSISPNCDISKSLKRIRPHHALR   82 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~-~~~g~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~   82 (518)
                      +...+++|+|||.+..++||+|++|++++|+++.++.||.++.. |+.|++|..||+.-.......+...++..      
T Consensus       122 ~~~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~ga~------  195 (293)
T KOG4792|consen  122 EEAEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPASASVSALIGGAS------  195 (293)
T ss_pred             hhhhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhhcccccccCCcc------
Confidence            34567899999999999999999999999999999999999875 66799998888754332211111111100      


Q ss_pred             cccCCCCCcccCCccccCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCccceeEEEEeecCCCC--CCCCCCCCC
Q psy824           83 RSVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAM--EAEELGFRA  160 (518)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~eL~~~~  160 (518)
                                          ....+.++.+..     ...+.+.+..++.+.....+.+|+++++-.+.  +...|.++.
T Consensus       196 --------------------e~si~q~~~g~e-----~~s~a~~s~~~~l~l~~~lPa~Arv~q~RVPnAYDkTaL~lev  250 (293)
T KOG4792|consen  196 --------------------ESSIPQSGGGAE-----RFSSASTSSDTPLPLQQNLPAYARVIQKRVPNAYDKTALALEV  250 (293)
T ss_pred             --------------------cccCCCCCCCCC-----CCCCCCcccCCcCccccCCChheeeehhcCCCccChhhhhhhc
Confidence                                000000000000     01112223334445555677899999987665  455899999


Q ss_pred             CCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccCC
Q psy824          161 GDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE  198 (518)
Q Consensus       161 g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~  198 (518)
                      ||+|.|++..-+|-|+|+++|+.|.||..||+.....+
T Consensus       251 GdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d~~~  288 (293)
T KOG4792|consen  251 GDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTDVQN  288 (293)
T ss_pred             CcEEEEEeeccCceeeeeecCccccccceeEEeeccCC
Confidence            99999999999999999999999999999999876543

>KOG3601|consensus

Probab=99.67  E-value=2.9e-17  Score=142.37  Aligned_cols=176  Identities=24%  Similarity=0.351  Sum_probs=120.9

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEEeCCeeEEEEeeeee--------------------------
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRGEAFEHLSQIIIN--------------------------   59 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~~~~g~~p~~~v~--------------------------   59 (518)
                      |.|+|++||.+...+||+|.+||.|.++...| ..|+..+..|..|..|.++.+                          
T Consensus         1 Mea~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~nw~~ael~g~~g~~P~Nai~~~~~~wve~~i~r~~ae~~l~~~~~G   80 (222)
T KOG3601|consen    1 MEAVAKNDFLAGIRDELSFLKGDNLKILNMEDDINWYKAELDGPEGFIPKNAIRMKPHEWVEGLIPRPLAEDLLSKKRDG   80 (222)
T ss_pred             CchhhhhhhhhcCcccceeecCCceEecchHHhhhhhhHhhcCccccCcccccccccccceecccccchhhhhhhccCcc
Confidence            45789999999999999999999999998866 579999999988888777664                          


Q ss_pred             -----ccCCCCCCCCCccccC---CCccccccccCCC-------CCcccCCccccCCCCCCCCCCCCCCCCCCCCcccCC
Q psy824           60 -----HSISPNCDISKSLKRI---RPHHALRRSVSQP-------LGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSD  124 (518)
Q Consensus        60 -----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (518)
                           .+.++++.++.+++..   .+.+++|...+.+       .+.+.++.+.+..+......           ..+.+
T Consensus        81 ~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~skfnslnplv~Y~rt~s~~r~~q-----------i~l~d  149 (222)
T KOG3601|consen   81 DFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWSSKFNSLNPLVSYHRTASQSRNQQ-----------IFLRD  149 (222)
T ss_pred             hhhhhhhhcCcccccccccCCCCceeccccccCccccccchhhccCCCCCcccCccccccccee-----------eeecc
Confidence                 2334455555555443   3555665444333       22333333333332221110           00111


Q ss_pred             CCCccCCCCCCccceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      ......+. .......++.++|||.++.+.+|.|++||.+.|++..++.||.|+..|+.|+||++||-..
T Consensus       150 ~~~~~~~~-~~~~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~p~  218 (222)
T KOG3601|consen  150 MEPPPAPL-PPAPTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVAPS  218 (222)
T ss_pred             cccccccC-CCCccchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCcccccc
Confidence            11000000 1113346889999999999999999999999999999999999999999999999999654

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.52  E-value=1.9e-14  Score=98.84  Aligned_cols=49  Identities=33%  Similarity=0.674  Sum_probs=44.9

Q ss_pred             EecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeee
Q psy824           11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIIN   59 (518)
Q Consensus        11 al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~   59 (518)
                      |+|||.|+.++||+|++||+|.|+.+.++|||.|+.+|+.|+||++||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence            7999999999999999999999999989999999999999999998874

...

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.52  E-value=1.6e-14  Score=99.20  Aligned_cols=49  Identities=41%  Similarity=0.904  Sum_probs=45.4

Q ss_pred             EeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEE
Q psy824          144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR  192 (518)
Q Consensus       144 a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~  192 (518)
                      |+|+|.|+.++||+|++||+|.|+...++|||.|+.+|+.|+||++||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNTGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEETTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEECCEEEEECHHhCC
Confidence            6899999999999999999999999999999999999999999999996

...

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.37  E-value=8.7e-13  Score=93.55  Aligned_cols=54  Identities=44%  Similarity=0.896  Sum_probs=48.7

Q ss_pred             EEEEeecCCCCCCCCCCCCCCCEEEEE-ecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          141 LAEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~-~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      +++|++||.+..+++|+|++||+|.|+ +..++|||.|+.+|+.||||.+||+++
T Consensus         1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~~   55 (55)
T PF07653_consen    1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEEI   55 (55)
T ss_dssp             EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEEH
T ss_pred             CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEEC
Confidence            478999999999999999999999999 788889999999999999999999864

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.35  E-value=1.7e-12  Score=92.09  Aligned_cols=53  Identities=34%  Similarity=0.647  Sum_probs=47.2

Q ss_pred             EEEEecCCCCCCCCCcccCCCCEEEEE-EecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            8 LAEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         8 ~~~al~d~~~~~~~eL~~~~gd~i~v~-~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      +++|++||.++.+++|+|++||+|.|+ ++.+++||.|+.+|+.|+||..++++
T Consensus         1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~g~~G~~P~~~v~~   54 (55)
T PF07653_consen    1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENNGRRGWFPSSYVEE   54 (55)
T ss_dssp             EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEETTEEEEEEGGGEEE
T ss_pred             CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEECCcEEEEcHHHEEE
Confidence            589999999999999999999999999 77788999999999999999887763

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>KOG2996|consensus

Probab=99.33  E-value=1.1e-12  Score=129.17  Aligned_cols=58  Identities=36%  Similarity=0.754  Sum_probs=52.2

Q ss_pred             cceeEEEEeecCCCCCCCCCCCCCCCEEEEEecC--CCCeEEEEECCeeEEEcCCCEEEc
Q psy824          137 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       137 ~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      .....|+|-|||-|.+..||||+.||+|.++.+.  |.|||.|+.+|+.||||++||+..
T Consensus       803 ~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngrvGwFPstYVee~  862 (865)
T KOG2996|consen  803 KVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGRVGWFPSTYVEED  862 (865)
T ss_pred             ceeeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCccccccccccccc
Confidence            4556788999999999999999999999999875  479999999999999999999864

>KOG3632|consensus

Probab=99.30  E-value=3.1e-12  Score=132.91  Aligned_cols=153  Identities=25%  Similarity=0.356  Sum_probs=105.1

Q ss_pred             ceEEEEecCCCCC--------CCCCcccCCCCEEEEEEecC-CCeeEEEeCCeeEEEEeeeeeccCCCCCCCCCccccCC
Q psy824            6 VVLAEAVWDHVAM--------EAEELGFRAGDVIEVLDTLD-RDWWWGTRGEAFEHLSQIIINHSISPNCDISKSLKRIR   76 (518)
Q Consensus         6 ~~~~~al~d~~~~--------~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~~~~g~~p~~~v~~~~~~~~~~~~~~~~~~   76 (518)
                      ..+.+|||||.+-        .+.||+|++||+|.|+...| +|+|.|+++|+.|++|.++|.+......          
T Consensus      1138 arifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~e---------- 1207 (1335)
T KOG3632|consen 1138 ARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVDNE---------- 1207 (1335)
T ss_pred             ceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccccCCcH----------
Confidence            4678999999884        46799999999999998877 8999999999999999999986543221          


Q ss_pred             CccccccccCCCCCcccCCccccCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCccceeEEEEeecCCCCCC---
Q psy824           77 PHHALRRSVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEA---  153 (518)
Q Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---  153 (518)
                        ..+++.      +.++.|.+.......    |         ...++.....     ....+..++|.|||+++..   
T Consensus      1208 --q~~~r~------rqG~lPsv~~~e~~~----g---------s~~s~g~~k~-----vp~~p~~mvaa~dydpqeSSpg 1261 (1335)
T KOG3632|consen 1208 --QTDRRW------RQGLLPSVPTEEMRK----G---------SAFSDGQQKM-----VPWPPRQMVAASDYDPQESSPG 1261 (1335)
T ss_pred             --HHHHHH------HhccCCCCCchhhhc----c---------cccCCCCccc-----cCCchhhhhhhhcCCcccCCCC
Confidence              001100      011222111111000    0         0000111000     0123457788999998865   


Q ss_pred             ----CCCCCCCCCEEEEEecCC-CCeEEEEECCeeEEEcCCCEEEc
Q psy824          154 ----EELGFRAGDVIEVLDTLD-RDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       154 ----~eL~~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                          .+|.|+.||+|+|..+.| +|++.|+++|+.|++|++|++..
T Consensus      1262 ~dgeAelafraGdIitVfg~mdddgfyyGelngqkglvpsnfle~p 1307 (1335)
T KOG3632|consen 1262 LDGEAELAFRAGDIITVFGKMDDDGFYYGELNGQKGLVPSNFLEAP 1307 (1335)
T ss_pred             cccceeeccccCCeEEeeccccCCcccccccCCccCccccccccCC
Confidence                489999999999998865 78999999999999999999765

>KOG2199|consensus

Probab=99.30  E-value=4.5e-13  Score=126.61  Aligned_cols=56  Identities=34%  Similarity=0.621  Sum_probs=52.6

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      .+..+||||||+|.+++||+|++||+|+|++..+.+||.|+++++.|+||.+||..
T Consensus       214 ~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~  269 (462)
T KOG2199|consen  214 VVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTA  269 (462)
T ss_pred             cchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhh
Confidence            35678999999999999999999999999999999999999999999999988884

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.28  E-value=6.6e-12  Score=86.27  Aligned_cols=46  Identities=33%  Similarity=0.617  Sum_probs=42.1

Q ss_pred             EEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC--CeeEEEEe
Q psy824           10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EAFEHLSQ   55 (518)
Q Consensus        10 ~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~--~~~g~~p~   55 (518)
                      +|+|||.++.++||+|++||.|.|+++.+++||.|+..  +..|++|+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            69999999999999999999999999999999999987  57899994

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>KOG1118|consensus

Probab=99.27  E-value=8.7e-12  Score=114.04  Aligned_cols=58  Identities=29%  Similarity=0.616  Sum_probs=55.2

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      .++|+|+|||++++++||.|+.||+|+|+...|.+||.|+..|..|+||.+||+++.+
T Consensus       306 ~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vlvp  363 (366)
T KOG1118|consen  306 QPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVLVP  363 (366)
T ss_pred             chhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEecc
Confidence            3579999999999999999999999999999999999999999999999999999865

>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain

Probab=99.24  E-value=3.7e-11  Score=95.21  Aligned_cols=64  Identities=41%  Similarity=0.822  Sum_probs=58.1

Q ss_pred             ceEeeeeEEEEecC-cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCCCC
Q psy824          453 QLIHQGEVIRVTSG-MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKGR  516 (518)
Q Consensus       453 ~ll~~g~l~~~~~~-~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~  516 (518)
                      +||++|++.+++.. .+.++|++|||+..||+||+...++..|.||++|.|+.+.|.+++||++.
T Consensus         1 eli~~Gel~~~s~~~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~   65 (109)
T cd01224           1 ELFLQGEATRQKQNKGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMF   65 (109)
T ss_pred             CceEeeeEEEEecccCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccc
Confidence            48999999999864 34789999999999999999888889999999999999999999999765

Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG2070|consensus

Probab=99.22  E-value=7e-12  Score=121.44  Aligned_cols=57  Identities=23%  Similarity=0.409  Sum_probs=53.8

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      --.++|.|.|.+.+.|||+|.+||+|+|+...++|||.|+++|+.||||++||++..
T Consensus        17 pLvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~TGWFPsnYV~eik   73 (661)
T KOG2070|consen   17 PLVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGRTGWFPSNYVREIK   73 (661)
T ss_pred             ceEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCccCccchHHHHHHh
Confidence            357999999999999999999999999999999999999999999999999999764

>KOG2199|consensus

Probab=99.20  E-value=3.4e-11  Score=114.14  Aligned_cols=59  Identities=42%  Similarity=0.754  Sum_probs=55.4

Q ss_pred             cceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcc
Q psy824          137 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV  195 (518)
Q Consensus       137 ~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~  195 (518)
                      ..+..++|||||+|..++||+|++||+|+|++..+++||.|+..+..|+||.+||....
T Consensus       213 ~~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~~~GlFPsnfVT~~l  271 (462)
T KOG2199|consen  213 TVVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHRGIGLFPSNFVTADL  271 (462)
T ss_pred             ccchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCCcccccchhhhhhhh
Confidence            45678999999999999999999999999999999999999999999999999998766

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.19  E-value=1.9e-11  Score=83.90  Aligned_cols=46  Identities=41%  Similarity=0.862  Sum_probs=42.0

Q ss_pred             EEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEEC--CeeEEEcC
Q psy824          143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EASGWFPS  188 (518)
Q Consensus       143 ~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~  188 (518)
                      +|+|+|.++.++||+|++||.|.|++..+++||.++..  |+.|+||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCCCcEEEeeC
Confidence            58999999999999999999999999999999999943  79999995

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain

Probab=99.18  E-value=6.8e-11  Score=95.49  Aligned_cols=64  Identities=23%  Similarity=0.377  Sum_probs=54.9

Q ss_pred             cceEeeeeEEEEecCc-ccceEEEEEeCCeEEEEeeccCCC-------CceEEEEEeecCCeeEEEcCCCCC
Q psy824          452 SQLIHQGEVIRVTSGM-WTNTITLFLFDHQLVYCKRDILKR-------NTHVYKARLNIDTSQIINLPDGKG  515 (518)
Q Consensus       452 r~ll~~g~l~~~~~~~-~~~~~~~fLF~d~ll~~k~~~~~~-------~~~~~k~~i~l~~~~v~~~~d~~~  515 (518)
                      +.||++|.|.+++.++ ..++||+|||||+||+||++..+.       ..|.+++.++|+.+.|.+.+|++.
T Consensus         2 ~elI~EG~L~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~~   73 (112)
T cd01261           2 NEFIMEGTLTRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSSE   73 (112)
T ss_pred             ccccccCcEEEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCcc
Confidence            6899999999998643 367999999999999999864322       379999999999999999999874

Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=99.13  E-value=3.1e-10  Score=90.43  Aligned_cols=60  Identities=17%  Similarity=0.267  Sum_probs=53.5

Q ss_pred             ceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCC
Q psy824          453 QLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG  513 (518)
Q Consensus       453 ~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~  513 (518)
                      +||++|.|.+++. +..++|++|||||+||+|.+....+.+|.+++.|||.+|+|.+++|+
T Consensus         1 ~~ikEG~L~K~~~-k~~~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~~   60 (99)
T cd01220           1 EFIRQGCLLKLSK-KGLQQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGMLTEESEHE   60 (99)
T ss_pred             CeeeEEEEEEEeC-CCCceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceEEeeccCC
Confidence            4899999999975 45789999999999999998766667899999999999999998884

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=99.12  E-value=3.2e-10  Score=90.64  Aligned_cols=63  Identities=17%  Similarity=0.256  Sum_probs=54.1

Q ss_pred             ccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCCC
Q psy824          451 SSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKG  515 (518)
Q Consensus       451 ~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~  515 (518)
                      +|.||++|.|++++ .+..+.|++|||||+||+++.. ..+.+|.+++.+||++|.|++++|+..
T Consensus         1 gR~li~eG~L~K~~-rk~~~~R~ffLFnD~LvY~~~~-~~~~~~~~~~~i~L~~~~v~~~~d~~~   63 (104)
T cd01218           1 GRVLVGEGVLTKMC-RKKPKQRQFFLFNDILVYGNIV-ISKKKYNKQHILPLEGVQVESIEDDGI   63 (104)
T ss_pred             CCEEEecCcEEEee-cCCCceEEEEEecCEEEEEEee-cCCceeeEeeEEEccceEEEecCCccc
Confidence            58999999999998 4556789999999999999764 334679999999999999999998653

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG0162|consensus

Probab=99.10  E-value=3.4e-10  Score=114.78  Aligned_cols=55  Identities=31%  Similarity=0.691  Sum_probs=52.4

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      ..+.|+|||.+++.+||+|++||+|.++.++.+|||.|+.+|+.||||.+||+.+
T Consensus      1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTEY 1106 (1106)
T ss_pred             cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCccccccccccccC
Confidence            6789999999999999999999999999999999999999999999999999753

>smart00326 SH3 Src homology 3 domains

Probab=99.08  E-value=3.8e-10  Score=81.08  Aligned_cols=55  Identities=38%  Similarity=0.752  Sum_probs=50.6

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEEC-CeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG-EASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~-g~~G~~P~~~v~~~  194 (518)
                      ..++|+|+|.+...++|+|++||.|.+++..++|||.++.. |+.||||.+|++.+
T Consensus         3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~~~   58 (58)
T smart00326        3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVEEI   58 (58)
T ss_pred             cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEEEC
Confidence            46889999999999999999999999999988999999965 99999999999753

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG1118|consensus

Probab=99.05  E-value=6.7e-11  Score=108.32  Aligned_cols=55  Identities=20%  Similarity=0.411  Sum_probs=52.4

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ..|+|+|||++++++||.|++||+|+|+.+.|++||.|+..|..|+||.+||...
T Consensus       307 p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~sG~FPvnYv~vl  361 (366)
T KOG1118|consen  307 PCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGESGMFPVNYVEVL  361 (366)
T ss_pred             hhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecCccCccccceeEEe
Confidence            5699999999999999999999999999999999999999999999999998854

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=99.02  E-value=6.8e-10  Score=78.50  Aligned_cols=51  Identities=41%  Similarity=0.788  Sum_probs=47.3

Q ss_pred             EEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECC-eeEEEcCCCEE
Q psy824          142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-ASGWFPSAFVR  192 (518)
Q Consensus       142 ~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g-~~G~~P~~~v~  192 (518)
                      ++|+|+|.+...++|+|.+||.|.+++..++|||.++..+ +.||||.+|++
T Consensus         2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE   53 (54)
T ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence            5799999999999999999999999999889999999655 99999999985

>smart00326 SH3 Src homology 3 domains

Probab=99.00  E-value=8.6e-10  Score=79.21  Aligned_cols=53  Identities=30%  Similarity=0.593  Sum_probs=48.9

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC-CeeEEEEeeeee
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG-EAFEHLSQIIIN   59 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~-~~~g~~p~~~v~   59 (518)
                      ..++|+|||.+..+++|+|++||.|.|++..+.|||.+++. ++.|+||..+++
T Consensus         3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~   56 (58)
T smart00326        3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYVE   56 (58)
T ss_pred             cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCCCCEEEEchHHEE
Confidence            46899999999999999999999999999988999999988 888999987765

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=98.99  E-value=8.6e-10  Score=77.97  Aligned_cols=52  Identities=31%  Similarity=0.556  Sum_probs=47.1

Q ss_pred             EEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCC-eeEEEEeeeee
Q psy824            8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-AFEHLSQIIIN   59 (518)
Q Consensus         8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~-~~g~~p~~~v~   59 (518)
                      +++|+|||.++.+++|+|.+||+|.|++..++|||.++..+ +.|+||..+++
T Consensus         1 ~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~~~G~vP~~~v~   53 (54)
T cd00174           1 YVRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGGKRGLFPSNYVE   53 (54)
T ss_pred             CEEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEccccCc
Confidence            37899999999999999999999999999888999999877 88999977654

>KOG4225|consensus

Probab=98.97  E-value=7.3e-10  Score=106.52  Aligned_cols=62  Identities=29%  Similarity=0.574  Sum_probs=57.3

Q ss_pred             ccceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          136 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       136 ~~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      +.....++|+|+|.++...||+|.+||+|.|+.+.|..|++|+.+|+.|+||++||+++...
T Consensus       227 ~~~~~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~  288 (489)
T KOG4225|consen  227 EKPKRAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPR  288 (489)
T ss_pred             ccccchhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCcc
Confidence            34455689999999999999999999999999999999999999999999999999999863

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=98.88  E-value=6.6e-09  Score=81.86  Aligned_cols=57  Identities=21%  Similarity=0.342  Sum_probs=49.9

Q ss_pred             cceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824          452 SQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       452 r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      +.||++|.+.....+   ++|++|||+++||+||++   +.+|+||..|.++++.|.+..+++
T Consensus         2 geLlleg~l~~~~~~---~eR~vFLFe~~ll~~K~~---~~~y~~K~~i~~~~l~i~e~~~~d   58 (97)
T cd01222           2 GDLLLEGRFREHGGG---KPRLLFLFQTMLLIAKPR---GDKYQFKAYIPCKNLMLVEHLPGE   58 (97)
T ss_pred             CceeeeceEEeecCC---CceEEEEecccEEEEEec---CCeeEEEEEEEecceEEecCCCCC
Confidence            579999999866553   489999999999999987   568999999999999999987764

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG2856|consensus

Probab=98.86  E-value=4.7e-10  Score=105.09  Aligned_cols=54  Identities=28%  Similarity=0.449  Sum_probs=50.3

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEEeC-CeeEEEEeeeeec
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRG-EAFEHLSQIIINH   60 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~-~~~g~~p~~~v~~   60 (518)
                      +.++|||||.+++.+||+|++||.+++++..| .||..|+++ |++|+||++||+.
T Consensus       415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~  470 (472)
T KOG2856|consen  415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVEC  470 (472)
T ss_pred             eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhc
Confidence            78999999999999999999999999988777 699999998 8899999999974

>KOG0162|consensus

Probab=98.85  E-value=1.5e-09  Score=110.28  Aligned_cols=55  Identities=24%  Similarity=0.501  Sum_probs=51.7

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      ...|.|+|||.+++.+||+|++||+|.++.++.+|||.|+.+|+.||||.+||.+
T Consensus      1051 ~p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1051 NPVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred             CcceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCCcccccccccccc
Confidence            3679999999999999999999999999999889999999999999999988863

>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain

Probab=98.80  E-value=5.5e-09  Score=79.52  Aligned_cols=59  Identities=19%  Similarity=0.184  Sum_probs=49.1

Q ss_pred             cceEeeeeEEEEecCcccceEEEEEeCCeEEEEeec--cC-CCCceEEEEEeecCCeeEEEcC
Q psy824          452 SQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRD--IL-KRNTHVYKARLNIDTSQIINLP  511 (518)
Q Consensus       452 r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~--~~-~~~~~~~k~~i~l~~~~v~~~~  511 (518)
                      |+|+.+|-++++.. +.++.|++|||||+|||++-+  +. +..+|..+..|||.++.+.+++
T Consensus         1 r~Lv~eg~lvel~~-~~rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~~   62 (96)
T cd01228           1 RQLVKDSFLVELVE-GSRKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSEP   62 (96)
T ss_pred             Ccccccceeeeehh-CCCcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecchh
Confidence            78999999999974 447899999999999999943  22 3378999999999999987653

BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG4269|consensus

Probab=98.80  E-value=1.7e-09  Score=112.06  Aligned_cols=259  Identities=17%  Similarity=0.196  Sum_probs=188.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCC
Q psy824          225 LSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRR----RNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWD  300 (518)
Q Consensus       225 ~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~----~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~  300 (518)
                      .+--..|+.+.--++..|..|.+.+..+.- =+.|++.    ..+.++...+.+||..+.+|+.+|..|-.-|....+.+
T Consensus       327 ek~~~~rkl~dS~f~~~d~~~~~s~d~l~l-~~~p~~al~~tsqp~~~~~~~~t~~~k~s~i~~~hk~~~~~l~pk~q~~  405 (1112)
T KOG4269|consen  327 EKGLEMRKLVDSGFLASDEHYSQSLDALLL-PMKPLKALATTSQPVLTKQQIETIFNKFSPIYEIHKEFYDNLHPKVQQW  405 (1112)
T ss_pred             hhhHHHHHHHhcccccccchhhcccchhhc-ccccccccCCCCCCCccccccccccccCCCchhhhhhhccccCchhhhh
Confidence            445577899999999999999999987754 2334432    33567788999999999999999999999888877543


Q ss_pred             CCCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcch--hhHHHH---HHhhcchHHHHHHHHHHHhhcc-----ccccCc
Q psy824          301 APYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSD--KDKWLL---FCCRSLEDKARWLAAFQQERAL-----VEQDRE  370 (518)
Q Consensus       301 ~~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~--~~~a~~---~~~~~~~~~~~fl~~~~~~~~~-----~~~~~l  370 (518)
                      . .....|..|...+..+-.         |..|..+  |..++.   .|+..+++|...-.++....+.     ....+.
T Consensus       406 ~-sqs~~~~~~~~L~S~l~n---------~~af~~~~sy~~al~~~~~~~sss~qfq~i~~~~~~~~n~~s~~sst~~~~  475 (1112)
T KOG4269|consen  406 K-SQSNSGGLFQKLASQLGN---------YLAFVDNESYLVALEMAEKCASSSPQFQCISEQLVVGVNKDSKDSSTWKDE  475 (1112)
T ss_pred             h-hhhccCccchhhhhhcch---------hhhhhcchhhhhhcccccchhhcchhhhhhhhhheecccccccccCCccch
Confidence            3 367889999999888877         5555555  555542   4566667666543333221110     011125


Q ss_pred             cCCCcchhhHHHHHHHhhhhccCCCCCCCCChH----------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q psy824          371 DGLEFAPAAKELARMSAARCHSSRPPTDHPDYV----------KITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVE  440 (518)
Q Consensus       371 ~~~L~~PvQRl~~y~LlL~~l~k~t~~~~~d~~----------~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~  440 (518)
                      ...|.+|+-|..+.-+-|-+++|++|-.|||+-          .|+.|++....++..+|+.....    ++.+..+.+ 
T Consensus       476 ~~~l~rpi~~~~ss~~s~~~~lk~ppf~~pd~f~~~~~~i~~~Llrda~d~~~~~is~id~k~~~~----r~~~f~ks~-  550 (1112)
T KOG4269|consen  476 EWLLYRPIDRVTSSTLSLHDLLKHPPFPHPDWFTNDSSVIQNELLRDALDISQNFISSIDEKIEPR----RLLEFLKSG-  550 (1112)
T ss_pred             hhhhccchhhhhHHHHHHHHHhCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHhhcccchh----hhhhhcccc-
Confidence            568899999999999999999999999999998          99999999999999999855432    222221222 


Q ss_pred             cCCCccccccccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccC---CCCceEEEEEeecCCeeEEE
Q psy824          441 GWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDIL---KRNTHVYKARLNIDTSQIIN  509 (518)
Q Consensus       441 ~~~~~~l~~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~---~~~~~~~k~~i~l~~~~v~~  509 (518)
                               ..|++++.+-+..+.. ..++.+++|+|.+.++++|-+..   +...|..++.||+-+..|..
T Consensus       551 ---------~~rq~L~d~f~~~v~~-~~~~~~~~~~~~~~ll~tk~~~~k~~~nq~y~~~~~Ipl~d~~v~~  612 (1112)
T KOG4269|consen  551 ---------ELRQLLKDVFFVEVEE-AQRKLRHVFLFTNSLLCTKLKKLKDGKNQQYDCKWYIPLKDLQVNR  612 (1112)
T ss_pred             ---------hhHhhhhhheeecccc-ccccchhhHHHhhccchhhhhhhcccccccCceeEEEeccccccCC
Confidence                     2378888887666644 33568899999999999995432   33678999999999988754

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=98.77  E-value=3.1e-08  Score=79.83  Aligned_cols=60  Identities=25%  Similarity=0.488  Sum_probs=50.1

Q ss_pred             ceEeeeeEEEEecCc-ccceEEEEEeCCeEEEEeeccC-CCCceEEEEEeecCCeeEEEcCC
Q psy824          453 QLIHQGEVIRVTSGM-WTNTITLFLFDHQLVYCKRDIL-KRNTHVYKARLNIDTSQIINLPD  512 (518)
Q Consensus       453 ~ll~~g~l~~~~~~~-~~~~~~~fLF~d~ll~~k~~~~-~~~~~~~k~~i~l~~~~v~~~~d  512 (518)
                      .||++|.|.+++... ..++||+|||||+||+|+++.. ....|.+++.|+|+.|.|.+..+
T Consensus         1 e~ikeG~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~~   62 (101)
T cd01219           1 ELLKEGSVLKISSTTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGDN   62 (101)
T ss_pred             CcccceEEEEEecCCCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCCC
Confidence            489999999998753 4678999999999999996532 34679999999999999998754

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain

Probab=98.76  E-value=3.6e-08  Score=80.74  Aligned_cols=62  Identities=21%  Similarity=0.273  Sum_probs=52.2

Q ss_pred             cceEeeeeEEEEecCc---------ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCCC
Q psy824          452 SQLIHQGEVIRVTSGM---------WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKG  515 (518)
Q Consensus       452 r~ll~~g~l~~~~~~~---------~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~  515 (518)
                      |.|++.|+|+.+....         ..+++|+|||||+||+||++.  +.+|.+....+.+.+.|.++++...
T Consensus         1 RwLvK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~--~~~f~V~dy~~r~~l~V~~~e~~~~   71 (125)
T cd01221           1 RWLVKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKL--GSTFVVFDYAPRSFLRVEKIEPDNQ   71 (125)
T ss_pred             CceEEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecC--CCeEEEEeeccccceEEeecccccc
Confidence            6899999998885432         246899999999999999884  7899999999999999998876543

Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG2856|consensus

Probab=98.76  E-value=1.1e-08  Score=96.11  Aligned_cols=55  Identities=33%  Similarity=0.602  Sum_probs=50.1

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCC-CCeEEEEEC-CeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRG-EASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~~~-g~~G~~P~~~v~~~  194 (518)
                      +.++|||||.++..+||+|+.||.++++...| .||..|+++ |+.|++|+|||+.+
T Consensus       415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI  471 (472)
T ss_pred             eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence            78999999999999999999999999887655 799999966 99999999999854

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain

Probab=98.75  E-value=3e-08  Score=80.67  Aligned_cols=64  Identities=16%  Similarity=0.284  Sum_probs=53.6

Q ss_pred             cceEeeeeEEEEecCc----ccceEEEEEeCCeEEEEeeccC----CCCceEEEEEeecCCeeEEEcCCCCC
Q psy824          452 SQLIHQGEVIRVTSGM----WTNTITLFLFDHQLVYCKRDIL----KRNTHVYKARLNIDTSQIINLPDGKG  515 (518)
Q Consensus       452 r~ll~~g~l~~~~~~~----~~~~~~~fLF~d~ll~~k~~~~----~~~~~~~k~~i~l~~~~v~~~~d~~~  515 (518)
                      ++||.+|.+.+.....    +.++|++|||+|+||+||+...    +...|+||+.|++++|.+++..+|+.
T Consensus         3 G~Ll~Q~~f~v~~~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~~Y~yK~~ikls~l~l~e~v~gd~   74 (114)
T cd01232           3 GKLLLQDTFQVWDPKAGLIQKGRERRVFLFEQSIIFAKEVKKKKQFGNPKYIYKSKLQVSKMGLTEHVEGDP   74 (114)
T ss_pred             CceEEEccEEEEeCCccccCCCceeEEEEeeceEEEEEEeccCCCCCceeEEEecceeeeeeEeEEccCCCC
Confidence            6799999988877642    4579999999999999997543    24589999999999999999888764

Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG4792|consensus

Probab=98.70  E-value=8.6e-09  Score=90.52  Aligned_cols=60  Identities=20%  Similarity=0.481  Sum_probs=55.3

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEcccC
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...+++++|||.+.+.++|.|++|++++|+++.+..||.++ ..|+.|++|..||+...+.
T Consensus       123 ~~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~  183 (293)
T KOG4792|consen  123 EAEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPA  183 (293)
T ss_pred             hhhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhh
Confidence            34678999999999999999999999999999999999999 8999999999999987654

>KOG1264|consensus

Probab=98.67  E-value=7.9e-09  Score=106.17  Aligned_cols=57  Identities=23%  Similarity=0.492  Sum_probs=52.9

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCee-EEEEeeeeeccCC
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAF-EHLSQIIINHSIS   63 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~-g~~p~~~v~~~~~   63 (518)
                      +.|+|||||.|+.+|||||.+|-+|+++.+.++|||+|..+|.. +|||++||++..+
T Consensus       775 vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~  832 (1267)
T KOG1264|consen  775 VTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEIST  832 (1267)
T ss_pred             hhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhcc
Confidence            56999999999999999999999999999999999999999865 9999999997754

>KOG2546|consensus

Probab=98.60  E-value=5.4e-08  Score=93.50  Aligned_cols=57  Identities=28%  Similarity=0.532  Sum_probs=53.6

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV  195 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~  195 (518)
                      ...++++|||.+...+||+|.+|-+|.|+.+.|+|||+|..+|..|+||.|||+.+.
T Consensus       423 LEkVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~  479 (483)
T KOG2546|consen  423 LEKVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLK  479 (483)
T ss_pred             HHHHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccccc
Confidence            355789999999999999999999999999999999999999999999999999875

>KOG2546|consensus

Probab=98.54  E-value=3.2e-08  Score=95.06  Aligned_cols=54  Identities=22%  Similarity=0.372  Sum_probs=50.9

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      ..++|+|||.+..++||+|.+|-+|.|+++.|+|||+|.++|..|+||.+||+.
T Consensus       424 EkVv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~  477 (483)
T KOG2546|consen  424 EKVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEP  477 (483)
T ss_pred             HHHHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCccccc
Confidence            347899999999999999999999999999999999999999999999999874

>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain

Probab=98.53  E-value=3.1e-07  Score=71.95  Aligned_cols=61  Identities=16%  Similarity=0.336  Sum_probs=51.6

Q ss_pred             ceEeeeeEEEEecCcc--cceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCCC
Q psy824          453 QLIHQGEVIRVTSGMW--TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKG  515 (518)
Q Consensus       453 ~ll~~g~l~~~~~~~~--~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~  515 (518)
                      .+|++|.+..++.+..  .+.+++|||||+||++....  +.+|.+...++|+++.|.+++|.+.
T Consensus         1 ~~i~~G~l~e~~~~~~kp~~rv~~FLfND~Lvva~~~~--~~ky~~~~~~~L~~i~V~ni~D~~~   63 (100)
T cd01226           1 KVILYGELEEFDVETKKPVQRVMLFLLNDRLIVGNINA--AGKYVMESTYSLNSVAVVNVKDREN   63 (100)
T ss_pred             CEEEcCcEEEechhhCCccceEEEEEeccEEEEEEecc--cceEEEEEEEehHHeEEEecCCCcC
Confidence            3799999999987654  34567999999999998764  3479999999999999999999864

Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG1264|consensus

Probab=98.51  E-value=3.9e-08  Score=101.24  Aligned_cols=59  Identities=31%  Similarity=0.638  Sum_probs=54.5

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECC-eeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-ASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g-~~G~~P~~~v~~~~~~  197 (518)
                      .+.|+|||||.|+.++||+|.+|.+|+.+++...|||.|..+| ..||||++||+.|...
T Consensus       774 ~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~  833 (1267)
T KOG1264|consen  774 QVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTA  833 (1267)
T ss_pred             chhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhccc
Confidence            4789999999999999999999999999999999999999886 6799999999998863

>KOG0515|consensus

Probab=98.45  E-value=7.3e-08  Score=94.95  Aligned_cols=56  Identities=30%  Similarity=0.706  Sum_probs=50.5

Q ss_pred             EEEEeecCCCCCCCCCCCCCCCEEEEEecCC---CCeEEEEECCeeEEEcCCCEEEccc
Q psy824          141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD---RDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~---~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      .+-|+|||.|+..|||+|++||.++|+.++|   .+||+++++|+.|+||.+|+-.+..
T Consensus       685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPr  743 (752)
T KOG0515|consen  685 VVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPR  743 (752)
T ss_pred             eeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCcc
Confidence            4678999999999999999999999999855   5899999999999999999976643

>KOG3655|consensus

Probab=98.44  E-value=3e-07  Score=90.11  Aligned_cols=57  Identities=32%  Similarity=0.618  Sum_probs=53.2

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEc
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLR  194 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~  194 (518)
                      .+..++|+|||.|.++.|++|..+|.|.+++..+.|||.|. -.|..|+||+|||+++
T Consensus       426 ~~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~li  483 (484)
T KOG3655|consen  426 EPQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVELI  483 (484)
T ss_pred             cCCCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCcccccccccC
Confidence            34678999999999999999999999999999999999999 6899999999999876

>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain

Probab=98.42  E-value=7e-07  Score=74.40  Aligned_cols=64  Identities=19%  Similarity=0.298  Sum_probs=50.9

Q ss_pred             cceEeeeeEEEEecCc-----------ccceEEEEEeCCeEEEEeeccCC-----CCceEEEEEeecCCeeEEEcCCCCC
Q psy824          452 SQLIHQGEVIRVTSGM-----------WTNTITLFLFDHQLVYCKRDILK-----RNTHVYKARLNIDTSQIINLPDGKG  515 (518)
Q Consensus       452 r~ll~~g~l~~~~~~~-----------~~~~~~~fLF~d~ll~~k~~~~~-----~~~~~~k~~i~l~~~~v~~~~d~~~  515 (518)
                      ++||++|.+.+....+           +.++|++|||..+||+||++..+     ..+|.||..|.|+++.+.+..+|+.
T Consensus         1 G~ll~Qd~f~Vw~~~~~~~~~k~~~r~K~~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v~gd~   80 (133)
T cd01227           1 GKLLMQGSFSVWTDHKKGHTKKELARFKPMQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENVKGDT   80 (133)
T ss_pred             CCceEecceEEEEccccccchhhhhccCCceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccCCCCc
Confidence            4689999988865421           24689999999999999987432     2489999999999999998766653

Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1702|consensus

Probab=98.39  E-value=2.2e-07  Score=80.29  Aligned_cols=57  Identities=26%  Similarity=0.518  Sum_probs=52.1

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE--ECCeeEEEcCCCEEEc
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLR  194 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~  194 (518)
                      .....+|.|||.|++.+|++|..||.|.-.+..++||.+|.  ..|..|..|+||++.+
T Consensus       206 ~gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie~v  264 (264)
T KOG1702|consen  206 TGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIEFV  264 (264)
T ss_pred             CCccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhheeeC
Confidence            44678999999999999999999999998999999999988  6899999999999864

>KOG0515|consensus

Probab=98.33  E-value=2e-07  Score=91.94  Aligned_cols=51  Identities=27%  Similarity=0.592  Sum_probs=44.8

Q ss_pred             EEEEecCCCCCCCCCcccCCCCEEEEEEecC---CCeeEEEeCCeeEEEEeeee
Q psy824            8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD---RDWWWGTRGEAFEHLSQIII   58 (518)
Q Consensus         8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~---~~Ww~g~~~~~~g~~p~~~v   58 (518)
                      .+-|||||+|+.+|||+|.+||-++|+.+.|   .+||+++++|..|+.|.+|.
T Consensus       685 ~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnyl  738 (752)
T KOG0515|consen  685 VVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYL  738 (752)
T ss_pred             eeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhh
Confidence            4678999999999999999999999999866   48999999999888885543

>KOG3601|consensus

Probab=98.28  E-value=3.1e-07  Score=80.56  Aligned_cols=55  Identities=24%  Similarity=0.442  Sum_probs=51.4

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeee
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIIN   59 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~   59 (518)
                      ...++.|+|||.++.+++|.|++||++.|+...+..||.|.+.|..|+||+.+|-
T Consensus       162 ~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv~  216 (222)
T KOG3601|consen  162 TNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYVA  216 (222)
T ss_pred             cchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCcccc
Confidence            4578999999999999999999999999999999999999999999999987765

>KOG1843|consensus

Probab=98.26  E-value=3.9e-07  Score=87.30  Aligned_cols=52  Identities=25%  Similarity=0.551  Sum_probs=49.6

Q ss_pred             EEEEecCCCCCCCCCcccCCCCEEEEEEecC--CCeeEEEeCCeeEEEEeeeee
Q psy824            8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGEAFEHLSQIIIN   59 (518)
Q Consensus         8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~--~~Ww~g~~~~~~g~~p~~~v~   59 (518)
                      .++|+|+|.++..++|+|++||+|.++++.+  .+||.|+.++..|+||++||+
T Consensus       418 ~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~  471 (473)
T KOG1843|consen  418 IATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVS  471 (473)
T ss_pred             eeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceec
Confidence            7999999999999999999999999999988  599999999999999999986

>KOG1843|consensus

Probab=98.14  E-value=1.1e-06  Score=84.34  Aligned_cols=55  Identities=33%  Similarity=0.720  Sum_probs=51.2

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCC--CCeEEEEECCeeEEEcCCCEEE
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGEASGWFPSAFVRL  193 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~--~~w~~~~~~g~~G~~P~~~v~~  193 (518)
                      +..+.++|+|..+...+|+|++||+|+++++.+  .+||.|+.+|++|+||+|||++
T Consensus       416 ~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~  472 (473)
T KOG1843|consen  416 PNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL  472 (473)
T ss_pred             cceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence            458899999999999999999999999999876  7899999999999999999974

>KOG3655|consensus

Probab=98.11  E-value=7.4e-07  Score=87.44  Aligned_cols=54  Identities=24%  Similarity=0.486  Sum_probs=49.0

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe-CCeeEEEEeeeeec
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEAFEHLSQIIINH   60 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~-~~~~g~~p~~~v~~   60 (518)
                      -.|+|+|||.|.++.|++|..+|.|.+++..|+|||.|.. +|.+|+||++||+-
T Consensus       428 q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~pdG~~glfPaNyV~l  482 (484)
T KOG3655|consen  428 QTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQGPDGEVGLFPANYVEL  482 (484)
T ss_pred             CCccccccccccCCcccccCCccccccccccCCccccccCCCCCcCccccccccc
Confidence            3589999999999999999999999999999999999986 46679999999874

>KOG1702|consensus

Probab=98.06  E-value=2.8e-06  Score=73.63  Aligned_cols=55  Identities=25%  Similarity=0.346  Sum_probs=48.9

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe--CCeeEEEEeeeee
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEAFEHLSQIIIN   59 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~~~~g~~p~~~v~   59 (518)
                      .+...+|.|||.|+.++|++|.-||.|..+...|+||.+|++  .|..|+.|++|++
T Consensus       206 ~gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~tGmlpaNyie  262 (264)
T KOG1702|consen  206 TGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGWTGMLPANYIE  262 (264)
T ss_pred             CCccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccccCCCchhhee
Confidence            346789999999999999999999999999999999988875  4677999998886

>KOG3875|consensus

Probab=98.05  E-value=6.4e-07  Score=82.78  Aligned_cols=58  Identities=28%  Similarity=0.512  Sum_probs=50.7

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCC-----CCeEEEE-E-CCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-----RDWWWGT-R-GEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-----~~w~~~~-~-~g~~G~~P~~~v~~~~~  196 (518)
                      -..|+|+|||.+.++.||+|++||.+.|..+.+     .+||... . +|..||||.|||+++..
T Consensus       268 ~~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r  332 (362)
T KOG3875|consen  268 HEFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR  332 (362)
T ss_pred             HHHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence            367899999999999999999999999987755     4588877 4 78999999999999876

>cd01223 PH_Vav Vav pleckstrin homology (PH) domain

Probab=97.94  E-value=1.4e-05  Score=64.30  Aligned_cols=60  Identities=27%  Similarity=0.277  Sum_probs=47.6

Q ss_pred             cceEeeeeEEEEecCc-ccceEEEEEeCCeEEEEeeccCC--CCceEEEEEeecCCeeEEEcC
Q psy824          452 SQLIHQGEVIRVTSGM-WTNTITLFLFDHQLVYCKRDILK--RNTHVYKARLNIDTSQIINLP  511 (518)
Q Consensus       452 r~ll~~g~l~~~~~~~-~~~~~~~fLF~d~ll~~k~~~~~--~~~~~~k~~i~l~~~~v~~~~  511 (518)
                      ++++..|++...+... ..++||+|||+-+||+||++...  ...|.||+.+.|..+.|++.+
T Consensus         2 GR~~~DGelk~k~~~~~k~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~   64 (116)
T cd01223           2 GRPLLDGEVRIKASEDQKTKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNP   64 (116)
T ss_pred             CccccCCceEEeEeccCCCceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecC
Confidence            4677888876655533 36799999999999999987432  345999999999999988765

Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0931|consensus

Probab=97.93  E-value=6.7e-05  Score=73.22  Aligned_cols=134  Identities=11%  Similarity=0.083  Sum_probs=88.4

Q ss_pred             ccCCCcchhhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccc
Q psy824          370 EDGLEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIE  449 (518)
Q Consensus       370 l~~~L~~PvQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~  449 (518)
                      +-+--++|-+|+..-- ++++|.---....-+++.|.-.+++|+.---..|+     +....+..+.+.|-|-+..-|..
T Consensus       339 mySPnVKperkM~leD-FikNLRGvDnGeDIpRell~GIYeRIqk~ELktnd-----DHVsqVqkVer~IVGkk~~vLs~  412 (627)
T KOG0931|consen  339 MYSPNVKPERKMKLED-FIKNLRGVDNGEDIPRELLVGIYERIQKRELKTND-----DHVSQVQKVERAIVGKKPPVLSL  412 (627)
T ss_pred             ccCCCCCHHHhhhHHH-HHHhccCCCCcccCcHHHHHHHHHHHHHhhcccCc-----chHHHHHHHHHHHhcCCCccccc
Confidence            4455567766643221 23333222223344677777777777654333333     33455566678898876656888


Q ss_pred             cccceEeeeeEEEEecCcc-----cceEEEEEeCCeEEEEe--eccCCCCceEEEEEeecCCeeEEE
Q psy824          450 TSSQLIHQGEVIRVTSGMW-----TNTITLFLFDHQLVYCK--RDILKRNTHVYKARLNIDTSQIIN  509 (518)
Q Consensus       450 ~~r~ll~~g~l~~~~~~~~-----~~~~~~fLF~d~ll~~k--~~~~~~~~~~~k~~i~l~~~~v~~  509 (518)
                      +.|+|++...|+.+....+     .+.|-+|||||+||++|  ++.+...+|+|++.+.|-.|.|..
T Consensus       413 phRRLVC~crL~eV~Dpnk~Qk~~ahqReVFLFNDllVV~K~~~kkk~s~TYtf~qs~~Llgmhv~l  479 (627)
T KOG0931|consen  413 PHRRLVCYCRLFEVPDPNKPQKLGAHQREVFLFNDLLVVTKIFQKKKTSVTYTFRQSFLLLGMHVQL  479 (627)
T ss_pred             CCceEEEEEeeeecCCCCchhhcccccceeeeecchhhhhhhhccCcceeEeehhhhhhHHHHHHHH
Confidence            8999999999999876443     45889999999999999  343344689999988887776543

>KOG3875|consensus

Probab=97.92  E-value=1.1e-06  Score=81.14  Aligned_cols=55  Identities=22%  Similarity=0.346  Sum_probs=46.2

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecC-----CCeeEEEe--CCeeEEEEeeeeecc
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-----RDWWWGTR--GEAFEHLSQIIINHS   61 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-----~~Ww~g~~--~~~~g~~p~~~v~~~   61 (518)
                      +.|+|+|||.|.++.||+|++||.+.|.-+.|     .+||..+.  ++..|++|.+||+..
T Consensus       269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi  330 (362)
T KOG3875|consen  269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKII  330 (362)
T ss_pred             HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhh
Confidence            56999999999999999999999999987766     25887654  345599999999965

>KOG3523|consensus

Probab=97.75  E-value=2.6e-06  Score=85.83  Aligned_cols=59  Identities=29%  Similarity=0.526  Sum_probs=54.1

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE--ECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...+.+...|.|..+|||+++.+|++.|+.+..+||.+|+  .+|..||||.+||+.|.+.
T Consensus       608 cpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~~  668 (695)
T KOG3523|consen  608 CPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDGERGWFPSSYVEEITNP  668 (695)
T ss_pred             CChhheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccCccCcchHHHHHHhcCH
Confidence            3467788999999999999999999999999999999999  6899999999999998764

>KOG2222|consensus

Probab=97.67  E-value=5.8e-06  Score=80.80  Aligned_cols=58  Identities=34%  Similarity=0.672  Sum_probs=53.9

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+.||.-..++||.|+++|+|+++...|...|.|+.+|-+||||+.||+.+..
T Consensus       548 ~krakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfvellde  605 (848)
T KOG2222|consen  548 AKRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVELLDE  605 (848)
T ss_pred             hHHHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHHHHHh
Confidence            4568899999999999999999999999999999999999999999999999997754

>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A

Probab=97.63  E-value=4.2e-05  Score=64.70  Aligned_cols=61  Identities=25%  Similarity=0.392  Sum_probs=31.7

Q ss_pred             eEeeeeEEEEecCc-ccceEEEEEeCCeEEEEeeccCC-CCce-EEEEEeecCCeeEEEcCCCC
Q psy824          454 LIHQGEVIRVTSGM-WTNTITLFLFDHQLVYCKRDILK-RNTH-VYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       454 ll~~g~l~~~~~~~-~~~~~~~fLF~d~ll~~k~~~~~-~~~~-~~k~~i~l~~~~v~~~~d~~  514 (518)
                      ||++|+|.+...+. ...+.++|||+++||+||.+..+ ...| +++.+|||+-+.|+..+|.-
T Consensus         1 Li~~G~L~Rk~~~~~~~~di~~~LFDh~Lll~K~k~~~k~e~ykV~r~PIPLeLL~l~~~~d~~   64 (135)
T PF15405_consen    1 LIYKGDLKRKGDNSFNWVDIHVYLFDHYLLLTKPKKVNKREQYKVYRRPIPLELLVLESMDDPP   64 (135)
T ss_dssp             ----------------S-EEEEEEESSEEEEEEEEEETTEEEEEESS--EEGGG-EEEE--TTT
T ss_pred             CccccccccccccccccceeEEEeeccEEEEEEEEecCCeEEEEEEECCcCHHHeeeecccCCC
Confidence            68899998876543 23489999999999999976432 2344 66899999999999877653

>KOG2222|consensus

Probab=97.61  E-value=1.1e-05  Score=78.81  Aligned_cols=52  Identities=25%  Similarity=0.468  Sum_probs=49.2

Q ss_pred             EEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeee
Q psy824            8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIIN   59 (518)
Q Consensus         8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~   59 (518)
                      .|+||.||.-..++||.|+++|+|+++...|+-.|.|+.+|-.||||+-+|+
T Consensus       550 rakal~df~r~dddelgfrkndiitiisekdehcwvgelnglrgwfpakfve  601 (848)
T KOG2222|consen  550 RAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNGLRGWFPAKFVE  601 (848)
T ss_pred             HHHHHhhhhhccccccccccccEEEEeecCCcceeeeccccccccchHHHHH
Confidence            4789999999999999999999999999999999999999999999988877

>KOG3725|consensus

Probab=97.56  E-value=2.8e-05  Score=70.00  Aligned_cols=56  Identities=30%  Similarity=0.540  Sum_probs=51.0

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEec--CCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDT--LDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~--~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      ...++++|||++..+.||++-..++|+|..-  .|++|..|+.+++.|-+|.+|++.+
T Consensus       317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL  374 (375)
T KOG3725|consen  317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL  374 (375)
T ss_pred             ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence            4679999999999999999999999999875  5689999999999999999999764

>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain

Probab=97.55  E-value=0.00045  Score=54.83  Aligned_cols=73  Identities=21%  Similarity=0.341  Sum_probs=55.7

Q ss_pred             CCCccccccccceEeeeeEEEEecC-cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCCCC
Q psy824          442 WEGEDLIETSSQLIHQGEVIRVTSG-MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKGR  516 (518)
Q Consensus       442 ~~~~~l~~~~r~ll~~g~l~~~~~~-~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~  516 (518)
                      |+|.++-.- +..|+...|...... ....+||++||...|++..... +...|.|++.+||..+.|+.++|.+.+
T Consensus         1 Weg~~i~~l-G~vi~mS~V~~~~~~~qe~~eRyLvLFp~~LlilS~s~-r~sGf~yqGkLPL~~i~v~~lEd~e~~   74 (111)
T cd01225           1 WEGQDIKTL-GNVIHMSQVAVQYGAGEEKRERYLVLFPNVLLMLSASP-RMSGFIYQGKLPLTGIIVTRLEDTEAL   74 (111)
T ss_pred             CCCcchhhc-CceEEEEEEEEecCCccccceeEEEEcCceEEEEEcCC-CccceEEeeeecccccEEechHhccCc
Confidence            456555554 678888887665332 3467999999999999998632 245799999999999999998887764

Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3771|consensus

Probab=97.53  E-value=0.00014  Score=72.11  Aligned_cols=58  Identities=26%  Similarity=0.229  Sum_probs=49.3

Q ss_pred             ccceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCC-CCeEEEEECCeeEEEcCCCEEE
Q psy824          136 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRGEASGWFPSAFVRL  193 (518)
Q Consensus       136 ~~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~~  193 (518)
                      .+....+.++|||.+++.++|+|+.||+|.|+...+ +.||.|++.|..+-+|.+|+..
T Consensus       397 p~~~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~~  455 (460)
T KOG3771|consen  397 PGFLYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFPL  455 (460)
T ss_pred             CCCccceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhcccccccceec
Confidence            345567899999999999999999999999998544 7899999988888777777753

>KOG4773|consensus

Probab=97.52  E-value=1.4e-05  Score=75.34  Aligned_cols=55  Identities=24%  Similarity=0.239  Sum_probs=51.0

Q ss_pred             EEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      .+.|++||.++...||.|.+||++.++.+.+.+||.|+.+|..|+||.+|+..-.
T Consensus       177 ~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld  231 (386)
T KOG4773|consen  177 RAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLD  231 (386)
T ss_pred             HHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhc
Confidence            4678999999999999999999999999999999999999999999999988553

>KOG4278|consensus

Probab=97.52  E-value=8e-05  Score=76.03  Aligned_cols=62  Identities=27%  Similarity=0.441  Sum_probs=51.8

Q ss_pred             ccceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCC-CCeEEEE-ECCeeEEEcCCCEEEcccCC
Q psy824          136 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGT-RGEASGWFPSAFVRLRVSQE  198 (518)
Q Consensus       136 ~~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~-~~g~~G~~P~~~v~~~~~~~  198 (518)
                      +..+...+|||||.+..++.|++.+||.+.|+.-.. ..|.+++ .+|+ ||||.||+.++..-+
T Consensus        87 endpNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGq-GWVPSNyItPvNSLe  150 (1157)
T KOG4278|consen   87 ENDPNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQ-GWVPSNYITPVNSLE  150 (1157)
T ss_pred             cCCCceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCC-ccccccccccccchh
Confidence            344568899999999999999999999999998654 6688888 5666 999999999887543

>KOG3632|consensus

Probab=97.49  E-value=0.0002  Score=76.22  Aligned_cols=62  Identities=26%  Similarity=0.392  Sum_probs=52.9

Q ss_pred             cceeEEEEeecCCCC--------CCCCCCCCCCCEEEEEecCC-CCeEEEEECCeeEEEcCCCEEEcccCC
Q psy824          137 DFVVLAEAVWDHVAM--------EAEELGFRAGDVIEVLDTLD-RDWWWGTRGEASGWFPSAFVRLRVSQE  198 (518)
Q Consensus       137 ~~~~~~~a~~~~~~~--------~~~eL~~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~~~~~~~  198 (518)
                      ....+.+|+|||++.        ...||.|++|++|.|+...| +|++.|+++|+.|++|.|+|..+....
T Consensus      1136 lparifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~ 1206 (1335)
T KOG3632|consen 1136 LPARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVDN 1206 (1335)
T ss_pred             CcceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccccCCc
Confidence            456788999999865        23599999999999998655 899999999999999999998877554

>KOG1451|consensus

Probab=97.38  E-value=0.00061  Score=68.75  Aligned_cols=56  Identities=23%  Similarity=0.435  Sum_probs=49.4

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEE-EEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIE-VLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~-v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      ...+.++|...|....+++|..|.++. |.....+||..|+++|+.|++|.|||+++
T Consensus       756 ~rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve~l  812 (812)
T KOG1451|consen  756 SRRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVEPL  812 (812)
T ss_pred             cccccceeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccCcC
Confidence            456788999999999999999999996 45566799999999999999999999863

>KOG3771|consensus

Probab=97.31  E-value=9.1e-05  Score=73.27  Aligned_cols=56  Identities=27%  Similarity=0.233  Sum_probs=46.2

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEEeCCeeEEEEeeeee
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRGEAFEHLSQIIIN   59 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~~~~g~~p~~~v~   59 (518)
                      .....++|+|||.++..+||+|+.||+|.|+...+ +.||.|.+.|..+.++..|+.
T Consensus       398 ~~~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~ke~~~~~~~~  454 (460)
T KOG3771|consen  398 GFLYKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGVKESDWNGLFP  454 (460)
T ss_pred             CCccceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhhccccccccee
Confidence            34567899999999999999999999999998655 789999988876666544443

>KOG4429|consensus

Probab=97.30  E-value=6.6e-05  Score=68.95  Aligned_cols=54  Identities=22%  Similarity=0.283  Sum_probs=49.8

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      +.|.|+|.|+++.++||....||++.+-++.++|||.|++.|.+|.||+.++++
T Consensus       364 ~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEe  417 (421)
T KOG4429|consen  364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEE  417 (421)
T ss_pred             HHhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHH
Confidence            458899999999999999999999999999899999999999999999877764

>KOG0197|consensus

Probab=97.25  E-value=0.00016  Score=72.74  Aligned_cols=77  Identities=21%  Similarity=0.283  Sum_probs=58.1

Q ss_pred             ccCceEEEEecCCCCCCCCCcccCCCCE-EEEEEecCCCeeEEEeC--CeeEEEEeeeeeccCCCCCCCCCccccCCCcc
Q psy824            3 EDFVVLAEAVWDHVAMEAEELGFRAGDV-IEVLDTLDRDWWWGTRG--EAFEHLSQIIINHSISPNCDISKSLKRIRPHH   79 (518)
Q Consensus         3 ~~~~~~~~al~d~~~~~~~eL~~~~gd~-i~v~~~~~~~Ww~g~~~--~~~g~~p~~~v~~~~~~~~~~~~~~~~~~~~~   79 (518)
                      .....+++|+|||.+..+.+|+|.+||+ ..+++..+..||+.+..  +..|..|+++|......+...+.+..+|.+..
T Consensus         8 ~~~~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~~~~~~~~~l~~~~Wf~~~   87 (468)
T KOG0197|consen    8 PSHETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARNRGSPAFIKLSDEPWFFGK   87 (468)
T ss_pred             ccccceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeeccccCCCccccccCCchhcc
Confidence            3446789999999999999999999999 88888888999997654  56689999988865433333444444554433

>KOG4278|consensus

Probab=97.20  E-value=0.00032  Score=71.83  Aligned_cols=53  Identities=21%  Similarity=0.275  Sum_probs=46.3

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEEeCCeeEEEEeeeee
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRGEAFEHLSQIIIN   59 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~~~~g~~p~~~v~   59 (518)
                      -..+|||||.|..++.||+.+||.+.|+.-.. +.|..++..++.||.|++|+.
T Consensus        91 NLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGqGWVPSNyIt  144 (1157)
T KOG4278|consen   91 NLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQGWVPSNYIT  144 (1157)
T ss_pred             ceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCCccccccccc
Confidence            36899999999999999999999999998654 678888876677999988876

>KOG2528|consensus

Probab=97.19  E-value=0.00012  Score=71.41  Aligned_cols=56  Identities=23%  Similarity=0.434  Sum_probs=51.0

Q ss_pred             EEEEeecCCCCCCCCCCCCCCCEEEEEecCC-CCeEEEE-ECCeeEEEcCCCEEEccc
Q psy824          141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGT-RGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~-~~g~~G~~P~~~v~~~~~  196 (518)
                      .++++|||.+.+..|++...||++.+..... .|||.|. ..|..|+||+.||+++..
T Consensus         4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~   61 (490)
T KOG2528|consen    4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTRL   61 (490)
T ss_pred             chhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeecc
Confidence            5789999999999999999999999987654 8999999 899999999999998763

>KOG4429|consensus

Probab=97.14  E-value=0.00012  Score=67.30  Aligned_cols=55  Identities=18%  Similarity=0.164  Sum_probs=50.8

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      ..+.++|.|.+..++||....||++.+-++...|||.|++.|..|-||+.|++..
T Consensus       364 ~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd~~hf~Aa~iEea  418 (421)
T KOG4429|consen  364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGDFEHFHAAEIEEA  418 (421)
T ss_pred             HHhhhhhccccccccccCCcccceeeecCcccCCCceeeeccccCCCcHHHHHHh
Confidence            4678999999999999999999999888888899999999999999999998754

>KOG0609|consensus

Probab=97.12  E-value=0.0002  Score=72.06  Aligned_cols=50  Identities=26%  Similarity=0.548  Sum_probs=41.8

Q ss_pred             ceEEEEecCCCCCCCC-------CcccCCCCEEEEEEecCCCeeEEEeCCe-----eEEEEe
Q psy824            6 VVLAEAVWDHVAMEAE-------ELGFRAGDVIEVLDTLDRDWWWGTRGEA-----FEHLSQ   55 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~-------eL~~~~gd~i~v~~~~~~~Ww~g~~~~~-----~g~~p~   55 (518)
                      +++++|+|||.+..++       -|+|++||++.|+.++|..||.++..|.     -|.+|+
T Consensus       214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS  275 (542)
T KOG0609|consen  214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPS  275 (542)
T ss_pred             eeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccC
Confidence            4789999999998755       5899999999999999999999876552     266664

>KOG4773|consensus

Probab=96.96  E-value=8.8e-05  Score=70.12  Aligned_cols=57  Identities=30%  Similarity=0.448  Sum_probs=53.0

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ..+.+++||......||.|..||++.++.+++.+||.|...|..||+|.+|++.+..
T Consensus       176 q~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~~~g~yp~sF~~~ld~  232 (386)
T KOG4773|consen  176 QRAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRGLTGYYPDSFVKQLDD  232 (386)
T ss_pred             HHHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeeccccccccHHhhhhhcc
Confidence            457889999999999999999999999999999999999999999999999998843

>cd01229 PH_etc2 Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain

Probab=96.89  E-value=0.0009  Score=53.15  Aligned_cols=68  Identities=16%  Similarity=0.303  Sum_probs=51.0

Q ss_pred             cccccceEeeeeEEEEecCc--ccceEEEEEeCCeEEEEeeccC-----C--------CCceEEEEEeecCCee-EEEcC
Q psy824          448 IETSSQLIHQGEVIRVTSGM--WTNTITLFLFDHQLVYCKRDIL-----K--------RNTHVYKARLNIDTSQ-IINLP  511 (518)
Q Consensus       448 ~~~~r~ll~~g~l~~~~~~~--~~~~~~~fLF~d~ll~~k~~~~-----~--------~~~~~~k~~i~l~~~~-v~~~~  511 (518)
                      +...|.|+...+++.++...  +.....+|||||.|=+||++++     +        ...|+.-..+||..++ |.|+.
T Consensus         2 lSShRs~v~r~e~~eL~d~l~grGe~~tlFLfsD~lEi~kkR~kv~~~~KSP~~~~~~~~~~KHi~lmpLs~IkrVvdI~   81 (129)
T cd01229           2 LSSHRSLVQRVETISLGEHLCDRGEQVTLFLFNDCLEIARKRHKVIGTFKSPHGSTRPPASLKHIHLMPLSQIKKVLDIR   81 (129)
T ss_pred             ccchhhhhheeeeeeecccccCCCCeEEEEEecchHHHhhhcccccCCcCCCCCCCCCCcccceEEEeEhHHeEEEEeee
Confidence            44568888888888776542  2458899999999999998752     1        1235555689999998 79999


Q ss_pred             CCCC
Q psy824          512 DGKG  515 (518)
Q Consensus       512 d~~~  515 (518)
                      |.|+
T Consensus        82 DtE~   85 (129)
T cd01229          82 DTED   85 (129)
T ss_pred             cccc
Confidence            9865

Epithelial cell transforming 2 (ECT2) pleckstrin homology (PH) domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF15411 PH_10: Pleckstrin homology domain

Probab=96.78  E-value=0.0033  Score=51.57  Aligned_cols=54  Identities=20%  Similarity=0.327  Sum_probs=43.6

Q ss_pred             cceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccC---------------CCCceEEEEEeecCCee
Q psy824          452 SQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDIL---------------KRNTHVYKARLNIDTSQ  506 (518)
Q Consensus       452 r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~---------------~~~~~~~k~~i~l~~~~  506 (518)
                      ++|+..|.+.+... ...+++++|||..+|||||....               +...+.+|++|.+.++.
T Consensus         5 G~Lll~g~~~V~k~-~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~   73 (116)
T PF15411_consen    5 GELLLHGTLTVGKD-DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNIT   73 (116)
T ss_pred             cceEEccEEEEEeC-CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeee
Confidence            68999999888765 44679999999999999995331               23568999999999875

>KOG4575|consensus

Probab=96.77  E-value=0.0011  Score=67.33  Aligned_cols=51  Identities=20%  Similarity=0.337  Sum_probs=41.9

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe-CCe--eEEEEeeee
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEA--FEHLSQIII   58 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~-~~~--~g~~p~~~v   58 (518)
                      ..++|+|.+.++.+++|.|.+||+|+++.-.| |||++.+ .++  .|+||+++|
T Consensus         9 ~~vrA~y~w~ge~eGdl~f~egDlie~trI~d-gkwwi~lhrNk~~~g~fpsNFv   62 (874)
T KOG4575|consen    9 CMVRALYAWPGEREGDLKFTEGDLIEQTRIED-GKWWILLHRNKDEDGLFPSNFV   62 (874)
T ss_pred             ceEEeeccCCCCcccccceecccceeEEeecc-ceeeeeeeecccccccCcccce
Confidence            45899999999999999999999999997755 6666543 333  399999888

>KOG3775|consensus

Probab=96.73  E-value=0.00074  Score=64.45  Aligned_cols=59  Identities=27%  Similarity=0.401  Sum_probs=52.6

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE--ECCeeEEEcCCCEEEcccCC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVSQE  198 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~~~  198 (518)
                      ..-++++.|.+..++||.+..||-|.|-...++-|.+|.  ..|++|+||+.|+-.+...+
T Consensus       263 ~THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~e  323 (482)
T KOG3775|consen  263 QTHRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDGPE  323 (482)
T ss_pred             hhhhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCCch
Confidence            345889999999999999999999999998899999998  68999999999998876543

>KOG0609|consensus

Probab=96.67  E-value=0.00093  Score=67.38  Aligned_cols=54  Identities=30%  Similarity=0.615  Sum_probs=46.3

Q ss_pred             eeEEEEeecCCCCCCC-------CCCCCCCCEEEEEecCCCCeEEEEEC-----CeeEEEcCCCEE
Q psy824          139 VVLAEAVWDHVAMEAE-------ELGFRAGDVIEVLDTLDRDWWWGTRG-----EASGWFPSAFVR  192 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~-------eL~~~~g~~i~v~~~~~~~w~~~~~~-----g~~G~~P~~~v~  192 (518)
                      .++++|+|||++..++       .|+|.+||++.|+++.|..||.++..     +..|++|+...+
T Consensus       214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~q  279 (542)
T KOG0609|consen  214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQ  279 (542)
T ss_pred             eeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHH
Confidence            5789999999988664       69999999999999999999999832     577999987664

>KOG3557|consensus

Probab=96.64  E-value=0.00065  Score=69.47  Aligned_cols=61  Identities=26%  Similarity=0.465  Sum_probs=53.6

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEcccCCC
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVSQED  199 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~~~  199 (518)
                      ...++.++|||.+++..||++.+||++.|+.. ..+||.++ ..|+.|++|.+.+..+.....
T Consensus       499 ~~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~~~~~~  560 (721)
T KOG3557|consen  499 GKKWVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPLQPEHT  560 (721)
T ss_pred             cceeeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccCCCccc
Confidence            44589999999999999999999999999975 45899999 789999999999998876544

>KOG2528|consensus

Probab=96.63  E-value=0.0011  Score=65.04  Aligned_cols=56  Identities=16%  Similarity=0.238  Sum_probs=48.7

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEEeC-CeeEEEEeeeeeccC
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRG-EAFEHLSQIIINHSI   62 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~-~~~g~~p~~~v~~~~   62 (518)
                      -.+||+|||.+...+||+...||++.+..... +|||.|.+. |..|.||+-||+...
T Consensus         3 sk~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~   60 (490)
T KOG2528|consen    3 SKARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSNSRGERGLFPASYVEVTR   60 (490)
T ss_pred             cchhhhcchhhcccccccccccceeeecCcccccccccCCCccCccCCCcccceeeec
Confidence            35899999999999999999999999987766 899999865 556999999998654

>KOG0197|consensus

Probab=96.54  E-value=0.00084  Score=67.77  Aligned_cols=56  Identities=32%  Similarity=0.671  Sum_probs=50.1

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCE-EEEEecCCCCeEEEE--ECCeeEEEcCCCEEEc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDV-IEVLDTLDRDWWWGT--RGEASGWFPSAFVRLR  194 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~-i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~  194 (518)
                      ...+.|+|||.+....+|+|..||+ ..+++..+..||.++  ..|..|++|.|||...
T Consensus        11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~~~~g~ip~N~v~~~   69 (468)
T KOG0197|consen   11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQLGQEGYIPSNYVARN   69 (468)
T ss_pred             cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhcCCCCcCcCceeecc
Confidence            3578999999999999999999999 778888889999988  3799999999999864

>KOG4575|consensus

Probab=96.48  E-value=0.0031  Score=64.35  Aligned_cols=56  Identities=30%  Similarity=0.560  Sum_probs=46.5

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE--E-CCeeEEEcCCCEEEc
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--R-GEASGWFPSAFVRLR  194 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~-~g~~G~~P~~~v~~~  194 (518)
                      .+.+++|+|-+.++..++|.|-+||+|+++...+ |||++.  . ....|+||.|||..+
T Consensus         7 ~p~~vrA~y~w~ge~eGdl~f~egDlie~trI~d-gkwwi~lhrNk~~~g~fpsNFvhcL   65 (874)
T KOG4575|consen    7 LPCMVRALYAWPGEREGDLKFTEGDLIEQTRIED-GKWWILLHRNKDEDGLFPSNFVHCL   65 (874)
T ss_pred             CCceEEeeccCCCCcccccceecccceeEEeecc-ceeeeeeeecccccccCcccceeec
Confidence            3578999999999999999999999999998765 565554  2 467899999999544

>KOG3565|consensus

Probab=96.10  E-value=0.0015  Score=69.30  Aligned_cols=59  Identities=12%  Similarity=0.398  Sum_probs=52.4

Q ss_pred             cceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCC-CCeEEEE--ECCeeEEEcCCCEEEcc
Q psy824          137 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGT--RGEASGWFPSAFVRLRV  195 (518)
Q Consensus       137 ~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~--~~g~~G~~P~~~v~~~~  195 (518)
                      +....+.|+|.|.+.++++++...|+++.+++... +||-+++  .+|..|.+|.+|++...
T Consensus       576 p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~  637 (640)
T KOG3565|consen  576 PPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDVTE  637 (640)
T ss_pred             CCccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccccc
Confidence            45678899999999999999999999999998754 8999999  78999999999998653

>KOG3524|consensus

Probab=95.85  E-value=0.031  Score=58.21  Aligned_cols=182  Identities=5%  Similarity=-0.057  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCCCC
Q psy824          229 QVRSRVVRELINTERDFVKVLHDVSEGYLAECRR----RNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYK  304 (518)
Q Consensus       229 ~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~----~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~  304 (518)
                      -.+.....+|++|+-+|+..+-..+..+..|+..    ........++..+|..+.+++..|...-.++++...-.-|  
T Consensus       393 y~tesnyv~il~Ti~~lf~~kleei~e~~~pil~~~eiktifgn~l~I~~vh~k~~D~l~~l~~nw~e~k~el~kayp--  470 (850)
T KOG3524|consen  393 YCTESNYVFILRTIVALFFGKLEEILELHEPILARLEIKTIFGNTLLIVVVHKKNDDKLLDLAQNWIEAKEELKKAYP--  470 (850)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHhCCcccCchhhcccccCchhhhhhhccchHHHHHHHHhhHHHHHHHHHhcc--
Confidence            3456688899999999999987777778888753    2234557899999999988877776665555543321111  


Q ss_pred             CchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHHHH
Q psy824          305 SCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELAR  384 (518)
Q Consensus       305 ~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~~y  384 (518)
                           .|.++   |+.|-+      ...||.-...-...+++.++.+.+|.+.-.....++...+|++ ++.|+|++.+ 
T Consensus       471 -----pyvnf---fet~ke------~~~~cdre~prfhaflKinq~kpecgRq~l~dlmirpvqrlps-villlndl~k-  534 (850)
T KOG3524|consen  471 -----PYVNF---FETIKE------LFDKCDRENPRFHAFLKINQSKPECGRQKLTDLMIRPVQRLPS-VILLLNDMAK-  534 (850)
T ss_pred             -----chhhH---HHHhHH------HHHHHhccchHHHHHHHccccchhhhhhcccchhccchhhhhH-HHHHHHHHHh-
Confidence                 12222   222111      3345533222234466777888888776555555555444555 6789999999 


Q ss_pred             HHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy824          385 MSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESL  429 (518)
Q Consensus       385 ~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~  429 (518)
                       +....+-+++.+..++...+.+++...++.....++-.+..+..
T Consensus       535 -~s~N~dk~~leea~kaikev~khInedKrkte~~~~ifdkf~di  578 (850)
T KOG3524|consen  535 -KSDNKDKNNLEEAAKAIKEVLKHINEDKRKTENFISIFDKFTDI  578 (850)
T ss_pred             -hccCcchhhHHHhhhhHHHHHHHhchhHHHHHHHHHHHHHHHhh
Confidence             66677767777888899999999999999999999877766653

>KOG1451|consensus

Probab=95.72  E-value=0.0074  Score=61.25  Aligned_cols=53  Identities=15%  Similarity=0.261  Sum_probs=47.3

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEE-ecCCCeeEEEeCCeeEEEEeeeee
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLD-TLDRDWWWGTRGEAFEHLSQIIIN   59 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~-~~~~~Ww~g~~~~~~g~~p~~~v~   59 (518)
                      ..+.++|.-.|....+|+|..|.++.-+. ...+||..|+++|..|++|++||+
T Consensus       757 rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGktglip~nyve  810 (812)
T KOG1451|consen  757 RRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGKTGLIPSNYVE  810 (812)
T ss_pred             ccccceeccCCCCcccccccCcceeeeecccCCCCceeeecCCCcccCcccccC
Confidence            34778999999999999999999998665 556899999999999999999987

>KOG3725|consensus

Probab=95.71  E-value=0.0022  Score=58.12  Aligned_cols=51  Identities=27%  Similarity=0.443  Sum_probs=43.5

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEe--cCCCeeEEEeCCeeEEEEee
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDT--LDRDWWWGTRGEAFEHLSQI   56 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~--~~~~Ww~g~~~~~~g~~p~~   56 (518)
                      ...|+++|||.|....||++-..|+|.|..-  .|.+|..|+.+++.|-.|-.
T Consensus       317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvt  369 (375)
T KOG3725|consen  317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVT  369 (375)
T ss_pred             ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchh
Confidence            4679999999999999999999999999654  46899999999887766643

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=95.54  E-value=0.06  Score=42.77  Aligned_cols=60  Identities=18%  Similarity=0.203  Sum_probs=48.1

Q ss_pred             eEeeeeEEEEec-CcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824          454 LIHQGEVIRVTS-GMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       454 ll~~g~l~~~~~-~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      .+++|.|.+.+. .+..+.+|++|+++.|++++.... ......+..|+|.++.|...++.+
T Consensus         1 ~~~~G~L~~~~~~~~~wk~r~~vL~~~~L~~~~~~~~-~~~~~~~~~i~l~~~~v~~~~~~~   61 (104)
T PF00169_consen    1 CIKEGWLLKKSSSRKKWKKRYFVLRDSYLLYYKSSKD-KSDSKPKGSIPLDDCTVRPDPSSD   61 (104)
T ss_dssp             EEEEEEEEEEESSSSSEEEEEEEEETTEEEEESSTTT-TTESSESEEEEGTTEEEEEETSST
T ss_pred             CEEEEEEEEECCCCCCeEEEEEEEECCEEEEEecCcc-ccceeeeEEEEecCceEEEcCccc
Confidence            478999988873 334679999999999999986621 236778889999999999988874

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>KOG3775|consensus

Probab=95.41  E-value=0.0079  Score=57.67  Aligned_cols=55  Identities=20%  Similarity=0.256  Sum_probs=47.8

Q ss_pred             EEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe--CCeeEEEEeeeeeccCC
Q psy824            9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEAFEHLSQIIINHSIS   63 (518)
Q Consensus         9 ~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~~~~g~~p~~~v~~~~~   63 (518)
                      =+|++.|.++.++||-+..||-|.|-...|+-|++|.+  .|..|.||++|+-+..-
T Consensus       265 HR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG~~GIFPA~ya~evd~  321 (482)
T KOG3775|consen  265 HRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTGERGIFPAFYAHEVDG  321 (482)
T ss_pred             hhhhhhccCCCcceeeeecCCeeEeeecccchhhccccccccccccccceeEEecCC
Confidence            46899999999999999999999999888899999875  46779999999876543

>KOG3557|consensus

Probab=95.33  E-value=0.0052  Score=63.13  Aligned_cols=54  Identities=28%  Similarity=0.486  Sum_probs=45.3

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC-CeeEEEEeeeeecc
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG-EAFEHLSQIIINHS   61 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~-~~~g~~p~~~v~~~   61 (518)
                      .+++++|||.|++..||++.+||+++|+.. ..+||..+.. |+.|+.|.++....
T Consensus       501 k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d-~R~WW~~kn~~G~~GyvP~nIL~~~  555 (721)
T KOG3557|consen  501 KWVLVLYDFQARNSSELSVKKGEVLEVLDD-GRKWWKVKNGHGRAGYVPSNILAPL  555 (721)
T ss_pred             eeeeeehhhhcccchhhhhhhhhhhhhhhc-cccceeccCccCCCCCcchhhhccC
Confidence            489999999999999999999999999965 5699997754 56688887776643

>smart00233 PH Pleckstrin homology domain

Probab=94.76  E-value=0.12  Score=40.50  Aligned_cols=59  Identities=17%  Similarity=0.270  Sum_probs=45.9

Q ss_pred             EeeeeEEEEec--CcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824          455 IHQGEVIRVTS--GMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       455 l~~g~l~~~~~--~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      +++|.|.+...  ....+.++++|+++.|.+++.... .........|+|.++.|...++..
T Consensus         2 ~~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~-~~~~~~~~~i~l~~~~v~~~~~~~   62 (102)
T smart00233        2 IKEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKA-KKDYKPKGSIDLSGITVREAPDPD   62 (102)
T ss_pred             ceeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCc-cccCCCceEEECCcCEEEeCCCCc
Confidence            67888888765  344679999999999999987632 122677889999999998887764

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=94.20  E-value=0.048  Score=41.20  Aligned_cols=43  Identities=14%  Similarity=0.237  Sum_probs=30.8

Q ss_pred             CCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEc
Q psy824          152 EAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLR  194 (518)
Q Consensus       152 ~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~  194 (518)
                      ...+|.+++|+.+.|++..+.+-|.++ ..|+.|+||.+++-..
T Consensus        29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~   72 (89)
T PF14603_consen   29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPL   72 (89)
T ss_dssp             -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS---
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCC
Confidence            346899999999999999999999999 7999999999998543

>KOG0199|consensus

Probab=93.90  E-value=0.049  Score=57.32  Aligned_cols=51  Identities=20%  Similarity=0.294  Sum_probs=39.8

Q ss_pred             EEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEEe--CCeeEEEEeeeee
Q psy824            9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTR--GEAFEHLSQIIIN   59 (518)
Q Consensus         9 ~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~--~~~~g~~p~~~v~   59 (518)
                      ++|..+|.+.+++.|-|++||.|.|++... +.||+|..  ++++|.||...|.
T Consensus       377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt  430 (1039)
T KOG0199|consen  377 AVARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVT  430 (1039)
T ss_pred             ceeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceee
Confidence            344455556778999999999999999866 57999954  4677999976666

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=93.48  E-value=0.14  Score=35.78  Aligned_cols=35  Identities=20%  Similarity=0.550  Sum_probs=29.4

Q ss_pred             CCCCCEEEEEecCCCC-eEEEE-ECCeeEEEcCCCEE
Q psy824          158 FRAGDVIEVLDTLDRD-WWWGT-RGEASGWFPSAFVR  192 (518)
Q Consensus       158 ~~~g~~i~v~~~~~~~-w~~~~-~~g~~G~~P~~~v~  192 (518)
                      +..|+.|.++.....+ |+..+ .+|..||++..|++
T Consensus        19 l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   19 LPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred             EeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence            5789999999887655 99994 89999999999984

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>KOG3522|consensus

Probab=91.18  E-value=0.37  Score=51.70  Aligned_cols=94  Identities=10%  Similarity=-0.016  Sum_probs=48.3

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCC
Q psy824          224 LLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRN-DMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAP  302 (518)
Q Consensus       224 ~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~-~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~  302 (518)
                      +..+|+.+-.+++-+++.+.+|++.=..++  +-.++..-- .+...-++...|-.-......+-.+-..+-.....+. 
T Consensus         8 l~~~Eq~yv~sL~t~vd~y~qpL~~~~~l~--~~~~~~eif~~i~ell~~he~fl~~l~s~~~~w~~qq~vga~~v~~f-   84 (925)
T KOG3522|consen    8 LIDREQSYVESLHTGVDRYVQPLKERKVLI--DPRDVDEIFQNIPELLEIHEDFLEQLCSRDQQWDEQQKVGASFVYSF-   84 (925)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccccccccc--CCchHHHHHHhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhh-
Confidence            445678888888888888888877621111  111111000 0111224455554333333333333333333331111 


Q ss_pred             CCCchHHHHHhhhcCcCC
Q psy824          303 YKSCIGETFLKHKSGFHP  320 (518)
Q Consensus       303 ~~~~ig~~f~~~~~~~~~  320 (518)
                      ....|+++|.++..+|+.
T Consensus        85 Sk~~v~~~Y~~y~nn~~~  102 (925)
T KOG3522|consen   85 SKTAVLAAYSKYVNNFKR  102 (925)
T ss_pred             hHHHHHHHHHHHHhchhH
Confidence            246799999999998876

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=91.18  E-value=0.37  Score=34.54  Aligned_cols=35  Identities=29%  Similarity=0.472  Sum_probs=28.9

Q ss_pred             CCCCCCEEEEEecCCCCeEEEEE-CCeeEEEcCCCE
Q psy824          157 GFRAGDVIEVLDTLDRDWWWGTR-GEASGWFPSAFV  191 (518)
Q Consensus       157 ~~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v  191 (518)
                      .+..|+.+.++...+++|...+. +|..||+|..++
T Consensus        26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~   61 (63)
T smart00287       26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV   61 (63)
T ss_pred             EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence            36789999999876559999995 499999987765

>KOG0199|consensus

Probab=90.99  E-value=0.22  Score=52.67  Aligned_cols=51  Identities=27%  Similarity=0.384  Sum_probs=41.4

Q ss_pred             EEeecCCCCCCCCCCCCCCCEEEEEecCC-CCeEEEE--ECCeeEEEcCCCEEE
Q psy824          143 EAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGT--RGEASGWFPSAFVRL  193 (518)
Q Consensus       143 ~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~--~~g~~G~~P~~~v~~  193 (518)
                      +|..+|++...+.|.+.+||.|+|++... .-||.|.  .+++.|.||.+-|..
T Consensus       378 ~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~Rn~kvG~Fprsvvt~  431 (1039)
T KOG0199|consen  378 VARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNKRNQKVGTFPRSVVTA  431 (1039)
T ss_pred             eeeeeccccCCCceeeccCCeEEEEecCCccceeeccccccceecccCcceeee
Confidence            34445556678899999999999998765 5689996  789999999998874

>KOG3565|consensus

Probab=90.55  E-value=0.062  Score=57.32  Aligned_cols=56  Identities=9%  Similarity=0.239  Sum_probs=47.6

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEE--eCCeeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGT--RGEAFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~--~~~~~g~~p~~~v~~   60 (518)
                      ....++|+|.|.+++++++++.+|+++.|++... +||=+++  .++..|.+|..|++.
T Consensus       577 ~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~~~~g~~Ptsyl~~  635 (640)
T KOG3565|consen  577 PIRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPNGEKGYVPTSYLDV  635 (640)
T ss_pred             CccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCCCcCCCCCcccccc
Confidence            4568999999999999999999999999998766 6888888  666678888777664

>cd00821 PH Pleckstrin homology (PH) domain

Probab=89.28  E-value=0.66  Score=35.60  Aligned_cols=57  Identities=19%  Similarity=0.300  Sum_probs=40.8

Q ss_pred             eeeEEEEecC--cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824          457 QGEVIRVTSG--MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       457 ~g~l~~~~~~--~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      +|.|.+...+  ...+.++++|+++.|.+++...... .......|+|.++.|...++.+
T Consensus         2 ~G~l~~~~~~~~~~w~~~~~~L~~~~l~~~~~~~~~~-~~~~~~~i~l~~~~v~~~~~~~   60 (96)
T cd00821           2 EGYLLKKTGKLRKGWKRRWFVLFNDLLLYYKKKSSKK-SYKPKGSIPLSGAEVEESPDDS   60 (96)
T ss_pred             cchhhhhhChhhCCccEEEEEEECCEEEEEECCCCCc-CCCCcceEEcCCCEEEECCCcC
Confidence            4555544433  3356899999999999998652111 3677889999999998887764

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG1729|consensus

Probab=89.15  E-value=0.052  Score=51.82  Aligned_cols=76  Identities=16%  Similarity=0.133  Sum_probs=52.2

Q ss_pred             HHHHhcccCCCccccccccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCC
Q psy824          434 AWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPD  512 (518)
Q Consensus       434 ~~~~~i~~~~~~~l~~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d  512 (518)
                      ..+..+.+. +.++..++|.|+.+|.+++...++ .+.+++|||+|+++++..-..+ ..|.-...+++.++.+....+
T Consensus        27 ~~e~~~~~r-~~~~~~~grv~~~q~~~~k~~rk~-~q~r~~~l~~D~~~~~~~~~~~-~~~~~~~~~~le~~~~~~~~~  102 (288)
T KOG1729|consen   27 KVEFCFGRR-GHPCRECGRVLCRQGTLVKRCRKK-LQSRSFFLFNDILVYGNIVSDN-KLLNKNHIIPLEGVSQESRSD  102 (288)
T ss_pred             cccchhhhc-cCcccccchhhhhhhhhHHHHhcc-cccccccccccchhhcccccCH-HHHhHHhcccccchhhhhhcc
Confidence            333444332 467888999999999996655433 7899999999999999754322 145555677776666655544

>KOG3705|consensus

Probab=88.83  E-value=0.33  Score=47.48  Aligned_cols=53  Identities=13%  Similarity=0.146  Sum_probs=40.0

Q ss_pred             EEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC--CeeEEEEeeeeecc
Q psy824            9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EAFEHLSQIIINHS   61 (518)
Q Consensus         9 ~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~--~~~g~~p~~~v~~~   61 (518)
                      .+|+++..+++.+||.++.||+|-|-...=+|.-.|.+.  ++.|.||++-|++-
T Consensus       512 ~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~t~~~GlfPSyKvrek  566 (580)
T KOG3705|consen  512 VIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQTYKEGLFPSYKVREK  566 (580)
T ss_pred             eEEEEecCCCcccccCcccCCeeeecccccccccccccccccccCCCccceeeee
Confidence            678999999999999999999998865422233334333  35599999998864

>PRK10884 SH3 domain-containing protein; Provisional

Probab=87.76  E-value=0.5  Score=43.10  Aligned_cols=38  Identities=13%  Similarity=0.261  Sum_probs=32.3

Q ss_pred             CCCCCCEEEEEecCC-CCeEEEE-ECCeeEEEcCCCEEEc
Q psy824          157 GFRAGDVIEVLDTLD-RDWWWGT-RGEASGWFPSAFVRLR  194 (518)
Q Consensus       157 ~~~~g~~i~v~~~~~-~~w~~~~-~~g~~G~~P~~~v~~~  194 (518)
                      ++..|+.|+|++..+ .||...+ .+|+.||++..|+...
T Consensus        49 ~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~   88 (206)
T PRK10884         49 TLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT   88 (206)
T ss_pred             EEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence            478999999998765 6899998 6899999999998644

>KOG3812|consensus

Probab=87.65  E-value=0.29  Score=46.72  Aligned_cols=48  Identities=19%  Similarity=0.429  Sum_probs=37.1

Q ss_pred             EEEEecCCCCCCCCC-------cccCCCCEEEEEEecCCCeeEEEe---CCeeEEEEe
Q psy824            8 LAEAVWDHVAMEAEE-------LGFRAGDVIEVLDTLDRDWWWGTR---GEAFEHLSQ   55 (518)
Q Consensus         8 ~~~al~d~~~~~~~e-------L~~~~gd~i~v~~~~~~~Ww~g~~---~~~~g~~p~   55 (518)
                      .+++.-+|.+.-+++       ++|...|+|.|-++-+.+||.|++   +..+|++|+
T Consensus        60 AV~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs  117 (475)
T KOG3812|consen   60 AVRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS  117 (475)
T ss_pred             EEEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence            355667787765554       899999999999999999999985   334577773

>KOG3812|consensus

Probab=87.49  E-value=0.27  Score=46.96  Aligned_cols=48  Identities=23%  Similarity=0.525  Sum_probs=37.2

Q ss_pred             EEEeecCCCCCC-------CCCCCCCCCEEEEEecCCCCeEEEE---ECCeeEEEcCC
Q psy824          142 AEAVWDHVAMEA-------EELGFRAGDVIEVLDTLDRDWWWGT---RGEASGWFPSA  189 (518)
Q Consensus       142 ~~a~~~~~~~~~-------~eL~~~~g~~i~v~~~~~~~w~~~~---~~g~~G~~P~~  189 (518)
                      +++.-+|.+.-+       ..++|+..|.+.|-++.+++||.|+   .++..|++|..
T Consensus        61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPsp  118 (475)
T KOG3812|consen   61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSP  118 (475)
T ss_pred             EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccch
Confidence            344556655433       3589999999999999999999999   36688999974

>KOG0040|consensus

Probab=86.77  E-value=0.019  Score=64.35  Aligned_cols=58  Identities=24%  Similarity=0.559  Sum_probs=53.3

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      .++.|+|+|....+-+.+.++||+.+.+....-+||.++++.+.|++|+.||+.+...
T Consensus       969 ~~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen  969 ECVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred             HHHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhhcCcchHHHHHHhccC
Confidence            4567899999999999999999999999888899999999999999999999988765

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=86.43  E-value=1.6  Score=31.14  Aligned_cols=36  Identities=25%  Similarity=0.373  Sum_probs=29.4

Q ss_pred             ccCCCCEEEEEEecCCCeeEEEeC-CeeEEEEeeeee
Q psy824           24 GFRAGDVIEVLDTLDRDWWWGTRG-EAFEHLSQIIIN   59 (518)
Q Consensus        24 ~~~~gd~i~v~~~~~~~Ww~g~~~-~~~g~~p~~~v~   59 (518)
                      .+..|+.+.++...+++|+..+.. |..||.+.++++
T Consensus        26 ~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~~   62 (63)
T smart00287       26 TLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVVN   62 (63)
T ss_pred             EecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeeec
Confidence            367899999998865599998876 778999877764

>cd00900 PH-like Pleckstrin homology-like domain

Probab=85.30  E-value=4.2  Score=31.15  Aligned_cols=43  Identities=26%  Similarity=0.316  Sum_probs=32.4

Q ss_pred             ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCC
Q psy824          468 WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG  513 (518)
Q Consensus       468 ~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~  513 (518)
                      ..+.++++|+++.|.+.+.+.......   ..+++..+.|...+++
T Consensus        18 ~w~~~~~~l~~~~l~~~~~~~~~~~~~---~~~~l~~~~v~~~~~~   60 (99)
T cd00900          18 RWKRRWFFLFDDGLLLYKSDDKKEIKP---GSIPLSEISVEEDPDG   60 (99)
T ss_pred             CceeeEEEEECCEEEEEEcCCCCcCCC---CEEEccceEEEECCCC
Confidence            357899999999999998774322211   6789999998887764

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=83.80  E-value=2.2  Score=29.59  Aligned_cols=35  Identities=14%  Similarity=0.417  Sum_probs=28.7

Q ss_pred             CCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCE
Q psy824          156 LGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV  191 (518)
Q Consensus       156 L~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v  191 (518)
                      ..+.+|..+.|++. ..+|...+.+|..||++.+.+
T Consensus        19 ~~l~~g~~v~v~~~-~~~W~~V~~~g~~GWv~~~~l   53 (55)
T PF06347_consen   19 ARLEPGVPVRVIEC-RGGWCKVRADGRTGWVHKSLL   53 (55)
T ss_pred             EEECCCCEEEEEEc-cCCeEEEEECCeEEeEEeeec
Confidence            34678899988865 568999999999999988754

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria

Probab=82.19  E-value=1.6  Score=32.23  Aligned_cols=24  Identities=42%  Similarity=0.945  Sum_probs=19.5

Q ss_pred             cccCCCCEEEEEEec------CCCeeEEEe
Q psy824           23 LGFRAGDVIEVLDTL------DRDWWWGTR   46 (518)
Q Consensus        23 L~~~~gd~i~v~~~~------~~~Ww~g~~   46 (518)
                      |+++.||.|.|-...      +.+||.|..
T Consensus         4 L~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~V   33 (75)
T PF11302_consen    4 LSVKPGDTVIVQDEQEVGQKQDKDWWMGQV   33 (75)
T ss_pred             cccCCCCEEEEecCccccccCCCCcEEEEE
Confidence            789999999996654      579999873

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=81.74  E-value=1.8  Score=30.83  Aligned_cols=24  Identities=29%  Similarity=0.736  Sum_probs=20.7

Q ss_pred             ccCCCCEEEEEEecCCCeeEEEeC
Q psy824           24 GFRAGDVIEVLDTLDRDWWWGTRG   47 (518)
Q Consensus        24 ~~~~gd~i~v~~~~~~~Ww~g~~~   47 (518)
                      .|++||.|.+....+++||.|..-
T Consensus         2 ~~~~G~~Ve~~~~~~~~W~~a~V~   25 (61)
T smart00743        2 DFKKGDRVEVFSKEEDSWWEAVVT   25 (61)
T ss_pred             CcCCCCEEEEEECCCCEEEEEEEE
Confidence            588999999998778999999753

Domain in plant sequences with possible chromatin-associated functions.

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain

Probab=81.71  E-value=5.8  Score=31.08  Aligned_cols=56  Identities=21%  Similarity=0.253  Sum_probs=39.6

Q ss_pred             EeeeeEEEEecCc---ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824          455 IHQGEVIRVTSGM---WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       455 l~~g~l~~~~~~~---~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      |+.|.|.....+.   ..++++++|=+++|-.-|-...+..    |..|||+++.|+++++|=
T Consensus         2 irkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~----kyilpLdnLk~Rdve~gf   60 (110)
T cd01256           2 IRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEK----KYMLPLDGLKLRDIEGGF   60 (110)
T ss_pred             eeeeeEEeeccceecCCCcceEEEEecceeeeecccccccc----cceeeccccEEEeecccc
Confidence            5566665543321   2578999999999998875543343    446899999999999863

Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=81.67  E-value=3.6  Score=28.39  Aligned_cols=35  Identities=17%  Similarity=0.262  Sum_probs=27.3

Q ss_pred             ccCCCCEEEEEEecCCC-eeEE-EeCCeeEEEEeeee
Q psy824           24 GFRAGDVIEVLDTLDRD-WWWG-TRGEAFEHLSQIII   58 (518)
Q Consensus        24 ~~~~gd~i~v~~~~~~~-Ww~g-~~~~~~g~~p~~~v   58 (518)
                      .+..|+.|.|++....+ |++. ..+|..||..+.++
T Consensus        18 ~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l   54 (55)
T PF08239_consen   18 QLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYL   54 (55)
T ss_dssp             EEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCE
T ss_pred             EEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEcccc
Confidence            35789999999987755 9998 67788899886554

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=80.82  E-value=3.2  Score=31.61  Aligned_cols=37  Identities=14%  Similarity=0.297  Sum_probs=25.4

Q ss_pred             CCCCcccCCCCEEEEEEecCCCeeEEEeC-CeeEEEEe
Q psy824           19 EAEELGFRAGDVIEVLDTLDRDWWWGTRG-EAFEHLSQ   55 (518)
Q Consensus        19 ~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~-~~~g~~p~   55 (518)
                      ..-+|++++|+.+.|+...+++=|.++.. |+.|+.+.
T Consensus        29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~   66 (89)
T PF14603_consen   29 GGKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLR   66 (89)
T ss_dssp             -TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEG
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEH
Confidence            35799999999999999999888888875 67798883

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	518
2pz1_A	466	Crystal Structure Of Auto-Inhibited Asef Length = 4		1e-80
2dx1_A	482	Crystal Structure Of Rhogef Protein Asef Length = 4		2e-77
2dfk_A	402	Crystal Structure Of The Cdc42-Collybistin Ii Compl		1e-51
3nmz_D	116	Crytal Structure Of Apc Complexed With Asef Length		6e-19
2ysq_A	81	Solution Structure Of The Sh3 Domain From Rho Guani		2e-17
3jv3_A	283	Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l		3e-10
2vrw_B	406	Critical Structural Role For The Ph And C1 Domains		5e-08
3ky9_A	587	Autoinhibited Vav1 Length = 587		2e-07
3gf9_A	295	Crystal Structure Of Human Intersectin 2 Rhogef Dom		2e-07
3bji_A	378	Structural Basis Of Promiscuous Guanine Nucleotide		1e-06
2dyb_A	341	The Crystal Structure Of Human P40(Phox) Length = 3		2e-06
1oeb_A	62	MonaGADS SH3C DOMAIN Length = 62		5e-06
1w6x_A	60	Sh3 Domain Of P40phox, Component Of The Nadph Oxida		5e-06
1uti_A	58	MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE L		5e-06
1h3h_A	60	Structural Basis For Specific Recognition Of An Rxx		6e-06
1z9q_A	79	Solution Structure Of Sh3 Domain Of P40phox Length		6e-06
2d0n_A	59	Crystal Structure Of The C-Terminal Sh3 Domain Of T		6e-06
2l0a_A	72	Solution Nmr Structure Of Signal Transducing Adapte		1e-05
1uj0_A	62	Crystal Structure Of Stam2 Sh3 Domain In Complex Wi		2e-05
1x2q_A	88	Solution Structure Of The Sh3 Domain Of The Signal		3e-05
1udl_A	98	The Solution Structure Of The Fifth Sh3 Domain Of I		3e-05
2vwf_A	58	Grb2 Sh3c (2) Length = 58		5e-05
1gcq_A	61	Crystal Structure Of Vav And Grb2 Sh3 Domains Lengt		6e-05
1io6_A	59	Growth Factor Receptor-Bound Protein 2 (Grb2) C-Ter		6e-05
1gri_A	217	Grb2 Length = 217		6e-05
2vvk_A	56	Grb2 Sh3c (1) Length = 56		7e-05
2d1x_A	66	The Crystal Structure Of The Cortactin-Sh3 Domain A		1e-04
1k76_A	62	Solution Structure Of The C-Terminal Sem-5 Sh3 Doma		2e-04
2esw_A	61	Atomic Structure Of The N-Terminal Sh3 Domain Of Mo		2e-04
2dl4_A	68	Solution Structure Of The First Sh3 Domain Of Stac		2e-04
2df6_A	59	Crystal Structure Of The Sh3 Domain Of Betapix In C		2e-04
2ak5_A	64	Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length		2e-04
1foe_A	377	Crystal Structure Of Rac1 In Complex With The Guani		2e-04
3sem_A	60	Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Le		3e-04
1sem_A	58	Structural Determinants Of Peptide-Binding Orientat		3e-04
3c0c_A	73	X-Ray Crystal Structure Of The Rat Endophilin A2 Sh		4e-04
1zsg_A	65	Beta Pix-Sh3 Complexed With An Atypical Peptide Fro		4e-04
3p6a_A	377	Crystal Structure Of The DhPH DOMAINS OF P115-Rhoge		6e-04
3odo_A	375	Crystal Structure Of The DhPH DOMAINS OF P115-Rhoge		6e-04
1f5x_A	208	Nmr Structure Of The Y174 Autoinhibited Dbl Homolog		6e-04
1x69_A	79	Solution Structures Of The Sh3 Domain Of Human Src		6e-04
2d8j_A	77	Solution Structure Of The Sh3 Domain Of Fyn-Related		7e-04
3odw_A	536	Crystal Structure Of The Linker-DhPH DOMAINS OF P11		7e-04
1x2p_A	68	Solution Structure Of The Sh3 Domain Of The Protein		7e-04
3odx_A	417	Crystal Structure Of An N-Terminally Truncated Link		7e-04
2kbt_A	142	Attachment Of An Nmr-Invisible Solubility Enhanceme		9e-04

>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef Length = 466

Iteration: 1
 Score =  297 bits (760), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 159/390 (40%), Positives = 239/390 (61%), Gaps = 34/390 (8%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
           VV AEA+WDHV M+ +ELGF+AGDVIEV+D  +R+WWWG   +  GWFP++FVRLRV+Q+
Sbjct: 30  VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQD 89
Query: 199 DTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLA 258
           +  +D      + G++      + +  S DQ+R+ V+ E+++TERD++K L D+ EGY+ 
Sbjct: 90  EPADDDAPLAGNSGAED---GGAEAQSSKDQMRTNVINEILSTERDYIKHLRDICEGYVR 146
Query: 259 ECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGF 318
           +CR+R DMFS EQ++TIFGN+EDI   Q +F++ LE + + + P+ S +G  FL+H++ F
Sbjct: 147 QCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRERPHLSELGACFLEHQADF 206
Query: 319 ---------HPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDR 369
                    HP+  V +    K+    K  +    CR L+           + +L     
Sbjct: 207 QIYSEYCNNHPNACVELSRLTKL---SKYVYFFEACRLLQKMI--------DISL----- 250
Query: 370 EDGLEFAPAAK--ELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRME 427
            DG    P  K  +     A     + P   H D+  +  AL AM++VA LINERKRR+E
Sbjct: 251 -DGFLLTPVQKICKYPLQLAELLKYTHP--QHRDFKDVEAALHAMKNVAQLINERKRRLE 307
Query: 428 SLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMW-TNTITLFLFDHQLVYCKR 486
           +++K+A WQ  +E WEGEDL+  SS+LI+ GE+ RVT     +     FLFDHQL+YCK+
Sbjct: 308 NIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKK 367
Query: 487 DILKRNTHVYKARLNIDTSQIINLPDGKGR 516
           D+L+R+   YK RL++D  ++++L DGK R
Sbjct: 368 DLLRRDVLYYKGRLDMDGLEVVDLEDGKDR 397

>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef Length = 482

Iteration: 1
 Score =  286 bits (731), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 156/390 (40%), Positives = 233/390 (59%), Gaps = 34/390 (8%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
           VV AEA+WDHV  + +ELGF+AGDVIEV D  +R+WWWG   +  GWFP++FVRLRV+Q+
Sbjct: 67  VVCAEALWDHVTXDDQELGFKAGDVIEVXDATNREWWWGRVADGEGWFPASFVRLRVNQD 126
Query: 199 DTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLA 258
           +  +D      + G++      + +  S DQ R+ V+ E+++TERD++K L D+ EGY+ 
Sbjct: 127 EPADDDAPLAGNSGAED---GGAEAQSSKDQXRTNVINEILSTERDYIKHLRDICEGYVR 183
Query: 259 ECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGF 318
           +CR+R D FS EQ++TIFGN+EDI   Q +F++ LE + + + P+ S +G  FL+H++ F
Sbjct: 184 QCRKRADXFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRERPHLSELGACFLEHQADF 243
Query: 319 ---------HPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDR 369
                    HP+  V +    K+    K  +    CR L+           + +L     
Sbjct: 244 QIYSEYCNNHPNACVELSRLTKL---SKYVYFFEACRLLQKXI--------DISL----- 287
Query: 370 EDGLEFAPAAK--ELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRME 427
            DG    P  K  +     A     + P   H D+  +  AL A ++VA LINERKRR+E
Sbjct: 288 -DGFLLTPVQKICKYPLQLAELLKYTHPQ--HRDFKDVEAALHAXKNVAQLINERKRRLE 344
Query: 428 SLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMW-TNTITLFLFDHQLVYCKR 486
           +++K+A WQ  +E WEGEDL+  SS+LI+ GE+ RVT     +     FLFDHQL+YCK+
Sbjct: 345 NIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQQRXFFLFDHQLIYCKK 404
Query: 487 DILKRNTHVYKARLNIDTSQIINLPDGKGR 516
           D+L+R+   YK RL+ D  ++++L DGK R
Sbjct: 405 DLLRRDVLYYKGRLDXDGLEVVDLEDGKDR 434

>pdb|2DFK|A Chain A, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 402

Iteration: 1
 Score =  200 bits (509), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 120/335 (35%), Positives = 192/335 (57%), Gaps = 35/335 (10%)
Query: 195 VSQEDTVEDCLAALASGGSKTLRRRTSIS--LLSNDQVRSRVVRELINTERDFVKVLHDV 252
           V+QED VE+  + + +G          +   L + DQ+R+ V+ E+++TER ++K L D+
Sbjct: 4   VNQEDGVEEGPSDVQNGHLDPNSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLKDI 63
Query: 253 SEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFL 312
            EGYL +CR+R DMFS EQ++ IFGN+EDI  FQ  F+ DLE + + D P+ S IG  FL
Sbjct: 64  CEGYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHLSEIGPCFL 123
Query: 313 KHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDRE-- 370
           +H+ GF  +           +C++     +   + ++D +R+   F+  R L++Q  +  
Sbjct: 124 EHQDGFWIY---------SEYCNNHLDACMELSKLMKD-SRYQHFFEACR-LLQQMIDIA 172
Query: 371 -DGLEFAPAAK---------ELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLIN 420
            DG    P  K         EL + +A          DH DY  +  AL  MR+V   IN
Sbjct: 173 IDGFLLTPVQKICKYPLQLAELLKYTA---------QDHSDYRYVAAALAVMRNVTQQIN 223
Query: 421 ERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTI-TLFLFDH 479
           ERKRR+E+++K+A WQ  V  WEG+D+++ SS+LI+ GE+  +      N     FLFDH
Sbjct: 224 ERKRRLENIDKIAQWQASVLDWEGDDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDH 283
Query: 480 QLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK 514
           Q+V CK+D+++R+   YK R+++D  ++I++ DG+
Sbjct: 284 QMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGR 318

>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef Length = 116

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 53/65 (81%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
           VV AEA+WDHV M+ +ELGF+AGDVIEV+D  +R+WWWG   +  GWFP++FVRLRV+Q+
Sbjct: 36  VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQD 95
Query: 199 DTVED 203
           +  +D
Sbjct: 96  EPADD 100

>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine Nucleotide Exchange Factor 9 Length = 81

Iteration: 1
 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
           +V AEAVWDHV M   EL F+AGDVI+VLD  ++DWWWG   +  GWFP++FVRL V+QE
Sbjct: 10  IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQE 69
Query: 199 DTVED 203
           D VE+
Sbjct: 70  DEVEE 74

>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l Length = 283

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 122/317 (38%), Gaps = 73/317 (23%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVED 203
            ++D+ A   +EL F  G +I VL+  D DWW G      G FPS +V+L    + + + 
Sbjct: 7   GMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPSQQW 66
Query: 204 CL-AALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRR 262
           C    L    + T R+R               + ELI TE ++V  L  V+E +  +   
Sbjct: 67  CSDLHLLDMLTPTERKRQG------------YIHELIVTEENYVNDLQLVTEIF-QKPLT 113
Query: 263 RNDMFSPEQIQTIFGNLEDILAFQSSFLEDLET--KLDWDAPYKSCIGETFLKHKSGFHP 320
            +++ + +++  IF N ++++      L+ L    K+  +      IG+      S   P
Sbjct: 114 ESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGDIL----SAQLP 169
Query: 321 HLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAK 380
           H+   +R               FC   L              AL++Q  ++  +F    K
Sbjct: 170 HMQPYIR---------------FCSCQLNGA-----------ALIQQKTDEAPDFKEFVK 203
Query: 381 ELARMSAARCHSS-------RP------------------PTDHPDYVKITEALEAMRDV 415
            LA     RC          +P                  P +HPD+  +  ALE   ++
Sbjct: 204 RLAM--DPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEEL 261
Query: 416 AMLINERKRRMESLEKL 432
              +NE  R  E+ ++L
Sbjct: 262 CSQVNEGVREKENSDRL 278

>pdb|2VRW|B Chain B, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 406

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/295 (21%), Positives = 131/295 (44%), Gaps = 33/295 (11%)
Query: 231 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFL 290
           R   +RE+  TE  +   L  + + ++   +R      P+ ++TIF N+E++ +  + FL
Sbjct: 26  RCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR---FLKPQDMETIFVNIEELFSVHTHFL 82
Query: 291 EDLETKLDWDAPYKSCIGETFLKHKSGF------HPHLGVTVRHAIKIHCSDKDKWL-LF 343
           ++L+  L    P  + + + F+K+K  F         +    +H  ++  + +D  + L 
Sbjct: 83  KELKDAL--AGPGATTLYQVFIKYKERFLVYGRYCSQVESASKHLDQVATAREDVQMKLE 140
Query: 344 CCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTDHPDYV 403
            C    +  R+       R L+    +  L++    +EL + +           D  +  
Sbjct: 141 ECSQRANNGRFTL-----RDLLMVPMQRVLKYHLLLQELVKHTQ----------DATEKE 185
Query: 404 KITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRV 463
            +  AL+AMRD+A  +NE KR  E+L ++  +Q  +E  +         ++  + ++  V
Sbjct: 186 NLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQSLANYGRPKIDGELKITSV 245
Query: 464 TSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKGRTD 518
                T+    FL D  L+ CKR   + +++  KA +N+ + Q+ +  D  G  D
Sbjct: 246 ERRSKTDRYA-FLLDKALLICKR---RGDSYDLKASVNLHSFQVRD--DSSGERD 294

>pdb|3KY9|A Chain A, Autoinhibited Vav1 Length = 587

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/333 (21%), Positives = 144/333 (43%), Gaps = 51/333 (15%)
Query: 195 VSQEDTVEDCLAALASGGSKT---LRRRTSISL---LSNDQVRSRVVRELINTERDFVKV 248
           V +++ + DC+    + G +    L R   +S+   ++    R   +RE+  TE  +   
Sbjct: 156 VEEDEDLYDCVENEEAEGDEIYEDLMRSEPVSMPPKMTEYDKRCCCLREIQQTEEKYTDT 215
Query: 249 LHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIG 308
           L  + + +L   +R      P+ I+ IF N+ED+L   + FL++++  L    P  + + 
Sbjct: 216 LGSIQQHFLKPLQR---FLKPQDIEIIFINIEDLLRVHTHFLKEMKEAL--GTPGAANLY 270
Query: 309 ETFLKHKSGFHPH------LGVTVRHAIKIHCSDKDKWL-LFCCRSLEDKARWLAAFQQE 361
           + F+K+K  F  +      +    +H  ++  + +D  + L  C    +  R+       
Sbjct: 271 QVFIKYKERFLVYGRYCSQVESASKHLDRVAAAREDVQMKLEECSQRANNGRFTL----- 325
Query: 362 RALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINE 421
           R L+    +  L++    +EL + +                  +  AL+AMRD+A  +NE
Sbjct: 326 RDLLMVPMQRVLKYHLLLQELVKHTQEAMEKE----------NLRLALDAMRDLAQCVNE 375
Query: 422 RKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEV-----IRVTSGMWTNTI--TL 474
            KR  E+L ++  +Q  +E  +          L H G       +++TS    + +    
Sbjct: 376 VKRDNETLRQITNFQLSIENLD--------QSLAHYGRPKIDGELKITSVERRSKMDRYA 427
Query: 475 FLFDHQLVYCKRDILKRNTHVYKARLNIDTSQI 507
           FL D  L+ CKR   + +++  K  +N+ + Q+
Sbjct: 428 FLLDKALLICKR---RGDSYDLKDFVNLHSFQV 457

>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/315 (20%), Positives = 116/315 (36%), Gaps = 69/315 (21%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVED 203
           A++D+ A   +EL F  G +I V++  D DWW G     +G FPS +V++    + + + 
Sbjct: 23  AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSDPSQQW 82
Query: 204 CLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRR 263
           C         + + R+           R   + ELI TE  ++  L  V E +  + R  
Sbjct: 83  CADLQTLDTMQPIERK-----------RQGYIHELIQTEERYMADLQLVVEVF--QKRMA 129
Query: 264 NDMFSPE-QIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHL 322
              F  E ++  IF N ++++   +  L+ L                  ++ K+G     
Sbjct: 130 ESGFLTEGEMALIFVNWKELIMSNTKLLKALR-----------------VRKKTGGEKMP 172
Query: 323 GVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKEL 382
              +   +    S    ++ FC   L              AL++Q  ++  +F    K+L
Sbjct: 173 VQMIGDILAAELSHMQAYIRFCSCQLNGA-----------ALLQQKTDEDTDFKEFLKKL 221
Query: 383 ARMSAARCHS-------------------------SRPPTDHPDYVKITEALEAMRDVAM 417
           A  S  RC                              P  H D+  +  ALE   ++  
Sbjct: 222 A--SDPRCKGMPLSSFLLKPMQRITRYPLLIRSILENTPESHADHSSLKLALERAEELCS 279
Query: 418 LINERKRRMESLEKL 432
            +NE  R  E+ ++L
Sbjct: 280 QVNEGVREKENSDRL 294

>pdb|3BJI|A Chain A, Structural Basis Of Promiscuous Guanine Nucleotide Exchange By The T-Cell Essential Vav1 Length = 378

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 117/270 (43%), Gaps = 42/270 (15%)
Query: 231 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFL 290
           R   +RE+  TE  +   L  + + +L   +R      P+ I+ IF N+ED+L   + FL
Sbjct: 7   RCCCLREIQQTEEKYTDTLGSIQQHFLKPLQR---FLKPQDIEIIFINIEDLLRVHTHFL 63
Query: 291 EDLETKLDWDAPYKSCIGETFLKHKSGFHPH------LGVTVRHAIKIHCSDKDKWL-LF 343
           ++++  L    P  + + + F+K+K  F  +      +    +H  ++  + +D  + L 
Sbjct: 64  KEMKEAL--GTPGAANLYQVFIKYKERFLVYGRYCSQVESASKHLDRVAAAREDVQMKLE 121
Query: 344 CCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTDHPDYV 403
            C    +  R+       R L+    +  L++    +EL + +           +  +  
Sbjct: 122 ECSQRANNGRFTL-----RDLLMVPMQRVLKYHLLLQELVKHT----------QEAMEKE 166
Query: 404 KITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEV--- 460
            +  AL+AMRD+A  +NE KR  E+L ++  +Q  +E  +          L H G     
Sbjct: 167 NLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLD--------QSLAHYGRPKID 218
Query: 461 --IRVTSGMWTNTI--TLFLFDHQLVYCKR 486
             +++TS    + +    FL D  L+ CKR
Sbjct: 219 GELKITSVERRSKMDRYAFLLDKALLICKR 248

>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox) Length = 341

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           AEA++D       EL F+AGDVI +L  +++DW  GT   A+G FP +FV++
Sbjct: 177 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 228

>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN Length = 62

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A A++D  A+E +ELGFR+G+V+EVLD+ +  WW G      G FP+ +V
Sbjct: 8   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 57

>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase Length = 60

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           AEA++D       EL F+AGDVI +L  +++DW  GT   A+G FP +FV++
Sbjct: 7   AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 58

>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE Length = 58

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A A++D  A+E +ELGFR+G+V+EVLD+ +  WW G      G FP+ +V
Sbjct: 4   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 53

>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal Sh3 Domain Length = 60

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A A++D  A+E +ELGFR+G+V+EVLD+ +  WW G      G FP+ +V
Sbjct: 6   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 55

>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox Length = 79

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           MD      AEA++D       EL F+AGDVI +L  +++DW  GT   A+G FP +FV++
Sbjct: 13  MDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 72

>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The Adaptor Protein Gads In Complex With Slp-76 Motif Peptide Reveals A Unique Sh3-Sh3 Interaction Length = 59

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A A++D  A+E +ELGFR+G+V+EVLD+ +  WW G      G FP+ +V
Sbjct: 5   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 54

>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter Molecule 1 Stam-1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4479e Length = 72

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           A++D  A E  EL F+AG++I VLD  D +WW G   +  G FPS FV
Sbjct: 22  AIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFV 69

>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A Ubpy-Derived Peptide Length = 62

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 196
           A++D  A+E  EL F+ G++I VLD  D +WW G     +G FPS FV   +S
Sbjct: 10  ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTDLS 62

>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal Transducing Adaptor Molecule 2 Length = 88

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVED 203
           A++D  A+E  EL F+ G++I VLD  D +WW G      G FPS FV   ++ E     
Sbjct: 22  ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNIETE--- 78
Query: 204 CLAALASGGS 213
             AA  SG S
Sbjct: 79  --AAAVSGPS 86

>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of Intersectin 2 (Kiaa1256) Length = 98

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           A++D+ A   +EL F  G +I V++  D DWW G     +G FPS +V++
Sbjct: 39  AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKM 88

>pdb|2VWF|A Chain A, Grb2 Sh3c (2) Length = 58

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           +A++D    E  ELGFR GD I V+D  D +WW G     +G FP  +V
Sbjct: 6   QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54

>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains Length = 61

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           +A++D    E  ELGFR GD I V+D  D +WW G     +G FP  +V
Sbjct: 6   QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54

>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal Sh3 Domain Complexed With A Ligand Peptide (Nmr, Minimized Mean Structure) Length = 59

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           +A++D    E  ELGFR GD I V+D  D +WW G     +G FP  +V
Sbjct: 6   QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
              +A++D    E  ELGFR GD I V+D  D +WW G     +G FP  +V
Sbjct: 159 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210

>pdb|2VVK|A Chain A, Grb2 Sh3c (1) Length = 56

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           +A++D    E  ELGFR GD I V+D  D +WW G     +G FP  +V
Sbjct: 4   QALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 52

>pdb|2D1X|A Chain A, The Crystal Structure Of The Cortactin-Sh3 Domain And Amap1- Peptide Complex Length = 66

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 132 LGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           LG + D  + A A++D+ A   +E+ F   D+I  ++ +D  WW G      G FP+ +V
Sbjct: 3   LGSENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 62
Query: 192 RLR 194
            LR
Sbjct: 63  ELR 65

>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain (Minimized Average Structure) Length = 62

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           M+  FV   +A++D    E+ EL F+ GDVI +++  D +WW G      G FPS +V
Sbjct: 2   METKFV---QALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 56

>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange Factor Length = 61

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 154 EELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
           +EL F  GDVI V    +  WW GT    +GWFPS +VR
Sbjct: 21  DELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 59

>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein Length = 68

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
           A++  V  E E+L  R GD+I +L+  + DWW G   +  G+FP+ FV+
Sbjct: 12  ALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQ 60

>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex With A High Affinity Peptide From Pak2 Length = 59

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 154 EELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
           +EL F  GDVI V    +  WW GT    +GWFPS +VR
Sbjct: 19  DELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 57

>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length = 64

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 154 EELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
           +EL F  GDVI V    +  WW GT    +GWFPS +VR
Sbjct: 21  DELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 59

>pdb|1FOE|A Chain A, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 377

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 228 DQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQS 287
           D++R +V+ EL+ TER +VK L+ + E YL   ++     + +++  +FGNL + + FQ 
Sbjct: 10  DKLR-KVICELLETERTYVKDLNCLXERYLKPLQKET-FLTQDELDVLFGNLTEXVEFQV 67
Query: 288 SFLEDLE 294
            FL+ LE
Sbjct: 68  EFLKTLE 74

>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Length = 60

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
             +A++D    E+ EL F+ GDVI +++  D +WW G      G FPS +V
Sbjct: 4   FVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54

>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And Of Sequence Specificity In Sh3 Domains Length = 58

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
             +A++D    E+ EL F+ GDVI +++  D +WW G      G FPS +V
Sbjct: 4   FVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54

>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3 Domain Length = 73

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV 195
           +A++D       ELGFR GD+I + + +D +W+ G     SG+FP ++V++ V
Sbjct: 17  KALYDFEPENDGELGFREGDLITLTNQIDENWYEGXLHGQSGFFPLSYVQVLV 69

>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From Alpha- Pak Length = 65

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 154 EELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
           +EL F  GDVI V    +  WW GT    +GWFPS +VR
Sbjct: 23  DELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVR 61

>pdb|3P6A|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef (R399e Mutant) Length = 377

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 110/262 (41%), Gaps = 34/262 (12%)
Query: 225 LSNDQV-RSRVVRELINTERDFVK---VLHDVSEGYLAECRRRNDMFSP-EQIQTIFGNL 279
           L   QV R  V+ EL+ TE   V+   VLHD+    +AEC     +F P E++Q IF +L
Sbjct: 21  LPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAEC-----LFFPLEELQNIFPSL 75
Query: 280 EDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDK 339
           ++++   S FL+ L  +          IG+  L    G     G   +      CS +  
Sbjct: 76  DELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAE---GSWFQKISSRFCSRQS- 131
Query: 340 WLLFCCRSLEDKARW---LAAFQQERALVEQDREDGL-EFAPAAKELARMSAARCHSSRP 395
              F    L+ K R      AF QE     + R   L +  P   +          S   
Sbjct: 132 ---FALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQ 188
Query: 396 PTDHP-DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVE-----------GWE 443
            T+ P +  K+  A E  R++   +N+  R ME L +L  +Q+R++             E
Sbjct: 189 NTEEPTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSE 248
Query: 444 GEDLIETSSQLIHQGEVI-RVT 464
            ++L  T  +L+H+G +  RVT
Sbjct: 249 FKNLDITKKKLVHEGPLTWRVT 270

>pdb|3ODO|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef Length = 375

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 110/262 (41%), Gaps = 34/262 (12%)
Query: 225 LSNDQV-RSRVVRELINTERDFVK---VLHDVSEGYLAECRRRNDMFSP-EQIQTIFGNL 279
           L   QV R  V+ EL+ TE   V+   VLHD+    +AEC     +F P E++Q IF +L
Sbjct: 19  LPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAEC-----LFFPLEELQNIFPSL 73
Query: 280 EDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDK 339
           ++++   S FL+ L  +          IG+  L    G     G   +      CS +  
Sbjct: 74  DELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAE---GSWFQKISSRFCSRQS- 129
Query: 340 WLLFCCRSLEDKARW---LAAFQQERALVEQDREDGL-EFAPAAKELARMSAARCHSSRP 395
              F    L+ K R      AF QE     + R   L +  P   +          S   
Sbjct: 130 ---FALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQ 186
Query: 396 PTDHP-DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVE-----------GWE 443
            T+ P +  K+  A E  R++   +N+  R ME L +L  +Q+R++             E
Sbjct: 187 NTEEPTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSE 246
Query: 444 GEDLIETSSQLIHQGEVI-RVT 464
            ++L  T  +L+H+G +  RVT
Sbjct: 247 FKNLDITKKKLVHEGPLTWRVT 268

>pdb|1F5X|A Chain A, Nmr Structure Of The Y174 Autoinhibited Dbl Homology Domain Length = 208

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 90/201 (44%), Gaps = 27/201 (13%)
Query: 231 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFL 290
           R   +RE+  TE  +   L  + + ++   +R      P+ ++TIF N+E++ +  + FL
Sbjct: 28  RCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR---FLKPQDMETIFVNIEELFSVHTHFL 84
Query: 291 EDLETKLDWDAPYKSCIGETFLKHKSGFHPH------LGVTVRHAIKIHCSDKDKWL-LF 343
           ++L+  L    P  + + + F+K+K  F  +      +    +H  ++  + +D  + L 
Sbjct: 85  KELKDAL--AGPGATTLYQVFIKYKERFLVYGRYCSQVESASKHLDQVATAREDVQMKLE 142
Query: 344 CCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTDHPDYV 403
            C    +  R+       R L+    +  L++    +EL + +           D  +  
Sbjct: 143 ECSQRANNGRFTL-----RDLLMVPMQRVLKYHLLLQELVKHTQ----------DATEKE 187
Query: 404 KITEALEAMRDVAMLINERKR 424
            +  AL+AMRD+A  +NE KR
Sbjct: 188 NLRLALDAMRDLAQCVNEVKR 208

>pdb|1X69|A Chain A, Solution Structures Of The Sh3 Domain Of Human Src Substrate Cortactin Length = 79

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 135 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR 194
           + D  + A A++D+ A   +E+ F   D+I  ++ +D  WW G      G FP+ +V LR
Sbjct: 13  ENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 72
Query: 195 VS 196
            S
Sbjct: 73  QS 74

>pdb|2D8J|A Chain A, Solution Structure Of The Sh3 Domain Of Fyn-Related Kinase Length = 77

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW---------GTRGEASGWFPSAFV 191
           A++D+ A  AE+L FRAGD ++VLDT    WW          G   +  G+ PS +V
Sbjct: 12  ALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYV 68

>pdb|3ODW|A Chain A, Crystal Structure Of The Linker-DhPH DOMAINS OF P115-Rhogef Length = 536

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 111/260 (42%), Gaps = 27/260 (10%)
Query: 223 SLLSNDQVRSRVVRELINTERDFVK---VLHDVSEGYLAECRRRNDMFSP-EQIQTIFGN 278
           SL  +   R  V+ EL+ TE   V+   VLHD+    +AEC     +F P E++Q IF +
Sbjct: 173 SLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAEC-----LFFPLEELQNIFPS 227
Query: 279 LEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKD 338
           L++++   S FL+ L  +          IG+  L    G     G   +      CS + 
Sbjct: 228 LDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAE---GSWFQKISSRFCS-RQ 283
Query: 339 KWLLFCCRSLEDKARWLAAFQQERALVEQDREDGL-EFAPAAKELARMSAARCHSSRPPT 397
            + L   ++ + K     AF QE     + R   L +  P   +          S    T
Sbjct: 284 SFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNT 343
Query: 398 DHP-DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVE-----------GWEGE 445
           + P +  K+  A E  R++   +N+  R ME L +L  +Q+R++             E +
Sbjct: 344 EEPTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFK 403
Query: 446 DLIETSSQLIHQGEVI-RVT 464
           +L  T  +L+H+G +  RVT
Sbjct: 404 NLDITKKKLVHEGPLTWRVT 423

>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein Arginine N-Methyltransferase 2 Length = 68

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 136 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           E+FV +A    D+ A +  +L F  G+ I +L     DWWWG R    G+ P+  V
Sbjct: 8   EEFVAIA----DYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHV 59

>pdb|3ODX|A Chain A, Crystal Structure Of An N-Terminally Truncated Linker-DhPH DOMAINS OF P115-Rhogef Length = 417

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 111/259 (42%), Gaps = 28/259 (10%)
Query: 225 LSNDQV-RSRVVRELINTERDFVK---VLHDVSEGYLAECRRRNDMFSP-EQIQTIFGNL 279
           L   QV R  V+ EL+ TE   V+   VLHD+    +AEC     +F P E++Q IF +L
Sbjct: 61  LPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMAEC-----LFFPLEELQNIFPSL 115
Query: 280 EDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDK 339
           ++++   S FL+ L  +          IG+  L    G     G   +      CS +  
Sbjct: 116 DELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAE---GSWFQKISSRFCS-RQS 171
Query: 340 WLLFCCRSLEDKARWLAAFQQERALVEQDREDGL-EFAPAAKELARMSAARCHSSRPPTD 398
           + L   ++ + K     AF QE     + R   L +  P   +          S    T+
Sbjct: 172 FALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTE 231
Query: 399 HP-DYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVE-----------GWEGED 446
            P +  K+  A E  R++   +N+  R ME L +L  +Q+R++             E ++
Sbjct: 232 EPTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKN 291
Query: 447 LIETSSQLIHQGEVI-RVT 464
           L  T  +L+H+G +  RVT
Sbjct: 292 LDITKKKLVHEGPLTWRVT 310

>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag (Inset) Using A Sortase-Mediated Protein Ligation Method Length = 142

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV 191
           A+A +D  A +  EL  + GD+I++L+   +  WW  RGE     GWFPS +V
Sbjct: 8   AKARYDFCARDRSELSLKEGDIIKILNKKGQQGWW--RGEIYGRIGWFPSNYV 58

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	518
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	1e-94
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	4e-11
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	2e-09
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	2e-74
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	8e-10
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	6e-58
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	2e-54
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	3e-52
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	3e-10
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	4e-52
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	6e-50
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	8e-04
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	3e-48
1foe_A	377	T-lymphoma invasion and metastasis inducing protei	1e-47
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	7e-42
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	9e-41
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	2e-40
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	2e-39
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	1e-38
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	3e-38
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	8e-38
1by1_A	209	Protein (PIX); RHO-GTPase exchange factor, transpo	1e-37
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	1e-35
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	6e-35
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	7e-27
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	6e-21
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	1e-23
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	1e-13
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	1e-18
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	2e-09
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	2e-18
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	7e-11
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	4e-17
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	6e-08
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	1e-04
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	3e-16
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	5e-10
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	3e-16
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	6e-10
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	3e-16
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	3e-11
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	4e-16
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	1e-10
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	7e-16
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	8e-09
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	1e-15
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	3e-10
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	1e-15
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	1e-10
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	3e-15
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	6e-08
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	3e-15
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	1e-09
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	3e-15
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	2e-10
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	4e-15
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	1e-09
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	4e-15
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	4e-09
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	5e-15
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	4e-09
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	5e-15
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	7e-10
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	6e-15
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	6e-09
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	7e-15
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	5e-08
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	7e-15
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	1e-08
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	7e-15
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	8e-09
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	8e-15
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	7e-10
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	9e-15
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	3e-11
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	1e-14
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	8e-09
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-14
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-08
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	1e-14
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	3e-09
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	1e-14
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	3e-07
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	1e-14
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	5e-08
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	1e-14
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	2e-09
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	2e-14
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	2e-09
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	2e-14
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	3e-08
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	2e-14
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	3e-08
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	2e-14
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	3e-09
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	3e-14
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	9e-10
3u23_A	65	CD2-associated protein; structural genomics, struc	3e-14
3u23_A	65	CD2-associated protein; structural genomics, struc	2e-08
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	3e-14
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	4e-08
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	4e-14
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	2e-08
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	4e-14
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	4e-08
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	5e-14
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	3e-08
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	6e-14
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	6e-09
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	6e-14
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	3e-08
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	6e-14
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	1e-08
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	7e-14
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	3e-09
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	8e-14
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	6e-08
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	8e-14
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	1e-08
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	9e-14
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	2e-08
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	9e-14
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	4e-09
2lg1_A	185	A-kinase anchor protein 13; metal binding protein;	9e-14
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	1e-13
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	3e-07
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	1e-13
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	9e-07
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	1e-13
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	3e-08
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	1e-13
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	5e-08
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	1e-13
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	4e-08
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	1e-13
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	4e-08
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	1e-13
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	2e-07
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	1e-13
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	2e-08
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	1e-13
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	2e-07
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	1e-13
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	2e-07
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	1e-13
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	9e-08
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	1e-13
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	5e-08
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	1e-13
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	4e-08
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	1e-13
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	3e-08
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	1e-13
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	1e-09
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	2e-13
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	7e-08
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	2e-13
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	9e-09
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	2e-13
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	2e-08
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	2e-13
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	1e-07
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	2e-13
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	3e-10
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	2e-13
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	7e-08
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	2e-13
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	4e-08
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	2e-13
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	5e-09
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	2e-13
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	4e-08
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	3e-13
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-07
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	3e-13
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	6e-09
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	4e-13
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	3e-07
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	4e-13
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	8e-08
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	5e-13
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	1e-08
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	6e-13
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	1e-07
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	7e-13
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	2e-08
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	7e-13
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	1e-08
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	7e-13
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	2e-08
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	9e-13
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	2e-08
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	9e-13
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	5e-08
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	9e-13
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	3e-09
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	9e-13
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	9e-13
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	1e-06
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	3e-06
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	1e-12
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	8e-08
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	1e-12
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	5e-07
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	1e-12
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	5e-08
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	1e-12
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	3e-06
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	1e-12
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	9e-09
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	2e-12
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	8e-07
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	2e-12
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	2e-08
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	2e-12
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	1e-07
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	2e-12
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	2e-08
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	2e-12
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	3e-08
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	2e-12
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	1e-07
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	2e-12
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	5e-08
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	2e-12
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	3e-09
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	2e-12
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	6e-08
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	2e-12
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	2e-08
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	3e-12
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	8e-09
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	3e-12
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	1e-07
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	3e-12
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	5e-09
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	4e-12
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	1e-06
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	4e-12
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	1e-06
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	4e-12
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	2e-08
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	4e-12
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	6e-07
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	5e-12
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	3e-08
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	5e-12
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	1e-08
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	6e-12
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	1e-08
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	6e-12
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	2e-08
1awj_A	77	ITK; transferase, regulatory intramolecular comple	6e-12
1awj_A	77	ITK; transferase, regulatory intramolecular comple	3e-08
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	6e-12
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	7e-08
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	6e-12
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	1e-06
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	6e-12
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	3e-07
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	8e-12
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	1e-06
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	8e-12
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	3e-06
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	1e-11
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	7e-08
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	1e-11
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	6e-06
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	1e-11
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	6e-06
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	1e-11
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	2e-08
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	1e-11
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	3e-06
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	2e-11
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	2e-06
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	2e-11
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	1e-06
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	2e-11
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	3e-07
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	2e-11
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	8e-07
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	2e-11
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	4e-07
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	2e-11
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	1e-05
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	2e-11
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	7e-06
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	3e-11
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	4e-06
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	3e-11
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	2e-07
1wxb_A	68	Epidermal growth factor receptor pathway substrate	3e-11
1wxb_A	68	Epidermal growth factor receptor pathway substrate	2e-07
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	3e-11
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	2e-08
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	4e-11
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	3e-07
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	4e-11
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	6e-06
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	5e-11
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	1e-07
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	5e-11
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	3e-06
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	6e-11
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	4e-07
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	6e-11
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	8e-08
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	6e-11
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	1e-05
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	7e-11
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	4e-08
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	7e-11
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	1e-06
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	8e-11
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	4e-07
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	1e-10
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	7e-07
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	1e-10
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	2e-06
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	1e-10
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	4e-07
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	1e-10
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	1e-05
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	1e-10
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	8e-08
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	1e-10
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	2e-05
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	2e-10
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	2e-07
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	3e-10
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	2e-05
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	3e-10
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	6e-05
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	4e-10
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	6e-06
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	5e-10
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	2e-06
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	5e-10
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	2e-05
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	5e-10
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	3e-05
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	7e-10
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	1e-09
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	1e-05
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	1e-09
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	2e-06
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	2e-09
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	1e-05
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	2e-09
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	9e-04
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	3e-09
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	2e-06
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	4e-09
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	2e-06
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	5e-09
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	2e-06
1i07_A	60	Epidermal growth factor receptor kinase substrate	6e-09
1i07_A	60	Epidermal growth factor receptor kinase substrate	2e-05
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	8e-09
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	9e-09
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	3e-05
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	1e-08
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	3e-04
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	1e-08
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	1e-04
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	1e-08
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	1e-04
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	2e-08
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	9e-05
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	2e-08
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	1e-04
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	2e-08
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	2e-08
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	3e-08
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	1e-04
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	4e-08
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	6e-08
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	3e-04
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	7e-08
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	8e-05
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-07
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	7e-05
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	9e-07
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	1e-04
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-06
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	3e-05
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	6e-06
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	1e-05
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	1e-05
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	7e-05
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-05
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	2e-05
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	1e-04

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score =  294 bits (754), Expect = 1e-94
 Identities = 153/407 (37%), Positives = 240/407 (58%), Gaps = 34/407 (8%)

Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA 182
              E    +  + +  VV AEA+WDHV M+ +ELGF+AGDVIEV+D  +R+WWWG   + 
Sbjct: 14  GGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADG 73

Query: 183 SGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTE 242
            GWFP++FVRLRV+Q++  +D      + G++        +  S DQ+R+ V+ E+++TE
Sbjct: 74  EGWFPASFVRLRVNQDEPADDDAPLAGNSGAEDGGAE---AQSSKDQMRTNVINEILSTE 130

Query: 243 RDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAP 302
           RD++K L D+ EGY+ +CR+R DMFS EQ++TIFGN+EDI   Q +F++ LE + + + P
Sbjct: 131 RDYIKHLRDICEGYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRFNRERP 190

Query: 303 YKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDK--WLLFCCRSLEDKARWLAAFQQ 360
           + S +G  FL+H++ F  +           +C++       L     L     +  A + 
Sbjct: 191 HLSELGACFLEHQADFQIY---------SEYCNNHPNACVELSRLTKLSKYVYFFEACRL 241

Query: 361 ERALVEQDREDGLEFAPA---------AKELARMSAARCHSSRPPTDHPDYVKITEALEA 411
            + +++   +  L   P            EL +      ++      H D+  +  AL A
Sbjct: 242 LQKMIDISLDGFL-LTPVQKICKYPLQLAELLK------YT---HPQHRDFKDVEAALHA 291

Query: 412 MRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNT 471
           M++VA LINERKRR+E+++K+A WQ  +E WEGEDL+  SS+LI+ GE+ RVT     + 
Sbjct: 292 MKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELIYSGELTRVTQPQAKSQ 351

Query: 472 -ITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKGRT 517
               FLFDHQL+YCK+D+L+R+   YK RL++D  ++++L DGK R 
Sbjct: 352 QRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRD 398

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 63.8 bits (155), Expect = 4e-11
 Identities = 27/40 (67%), Positives = 34/40 (85%)

Query: 6  VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          VV AEA+WDHV M+ +ELGF+AGDVIEV+D  +R+WWWG 
Sbjct: 30 VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGR 69

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 3/90 (3%)

Query: 303 YKSCI---GETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQ 359
           YK  +   G   +  + G    L V++++A ++H        L C R  E K RWL AF 
Sbjct: 377 YKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFA 436

Query: 360 QERALVEQDREDGLEFAPAAKELARMSAAR 389
           +ER  V+ D+E G       ++ A ++A++
Sbjct: 437 REREQVQLDQETGFSITELQRKQAMLNASK 466

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Length = 402

 Score =  240 bits (613), Expect = 2e-74
 Identities = 114/339 (33%), Positives = 184/339 (54%), Gaps = 33/339 (9%)

Query: 193 LRVSQEDTVEDCLAALASGG--SKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLH 250
           L V+QED VE+  + + +G     +        L + DQ+R+ V+ E+++TER ++K L 
Sbjct: 2   LWVNQEDGVEEGPSDVQNGHLDPNSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLK 61

Query: 251 DVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGET 310
           D+ EGYL +CR+R DMFS EQ++ IFGN+EDI  FQ  F+ DLE + + D P+ S IG  
Sbjct: 62  DICEGYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDPHLSEIGPC 121

Query: 311 FLKHKSGFHPHLGVTVRHAIKIHCSDKDK--WLLFCCRSLEDKARWLAAFQQERALVEQD 368
           FL+H+ GF  +           +C++       L           +  A +  + +++  
Sbjct: 122 FLEHQDGFWIY---------SEYCNNHLDACMELSKLMKDSRYQHFFEACRLLQQMIDIA 172

Query: 369 REDGLEFAPA---------AKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLI 419
            +  L   P            EL +      ++     DH DY  +  AL  MR+V   I
Sbjct: 173 IDGFL-LTPVQKICKYPLQLAELLK------YT---AQDHSDYRYVAAALAVMRNVTQQI 222

Query: 420 NERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNT-ITLFLFD 478
           NERKRR+E+++K+A WQ  V  WEG+D+++ SS+LI+ GE+  +      N     FLFD
Sbjct: 223 NERKRRLENIDKIAQWQASVLDWEGDDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFD 282

Query: 479 HQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKGRT 517
           HQ+V CK+D+++R+   YK R+++D  ++I++ DG+   
Sbjct: 283 HQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDD 321

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Length = 402

 Score = 59.9 bits (145), Expect = 8e-10
 Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 314 HKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGL 373
            + G      V++++A K+H  + ++  LF  + LE+K RWL AF++ER +V++D + G 
Sbjct: 314 IEDGRDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQEDEKIGF 373

Query: 374 EFAPAAKELARMSAARCHSSRPPTDHPDY 402
           E +   K  A M+  R  S +  T    +
Sbjct: 374 EISENQKRQAAMT-VRKASKQKVTQRKWH 401

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587

 Score =  201 bits (512), Expect = 6e-58
 Identities = 84/418 (20%), Positives = 153/418 (36%), Gaps = 72/418 (17%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW-----WGTRGEASGWFPSAFVRLRVS 196
                +   ++  EL F A D+ +V D     +      W    +  G  P       V 
Sbjct: 82  LSTCCEKFGLKRSEL-FEAFDLFDVQDFGKVIYTLSALSWTPIAQNRGIMPFPTEEESVG 140

Query: 197 QED-----------------TVEDCLAALASGGS---KTLRRRTSISL---LSNDQVRSR 233
            ED                  + DC+    + G    + L R   +S+   ++    R  
Sbjct: 141 DEDIYSGLSDQIDDTVEEDEDLYDCVENEEAEGDEIYEDLMRSEPVSMPPKMTEYDKRCC 200

Query: 234 VVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDL 293
            +RE+  TE  +   L  + + +L   +R      P+ I+ IF N+ED+L   + FL+++
Sbjct: 201 CLREIQQTEEKYTDTLGSIQQHFLKPLQR---FLKPQDIEIIFINIEDLLRVHTHFLKEM 257

Query: 294 ETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKW---LLFCCRSLED 350
           +  L    P  + + + F+K+K  F              +CS  +     L     + ED
Sbjct: 258 KEALGT--PGAANLYQVFIKYKERF---------LVYGRYCSQVESASKHLDRVAAARED 306

Query: 351 KARWLAAFQQERALVEQDREDGLEFAPA---------AKELARMSAARCHSSRPPTDHPD 401
               L    Q          D L   P           +EL +      H+     +  +
Sbjct: 307 VQMKLEECSQRANNGRFTLRDLL-MVPMQRVLKYHLLLQELVK------HTQ----EAME 355

Query: 402 YVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVI 461
              +  AL+AMRD+A  +NE KR  E+L ++  +Q  +E  +    +    +    GE+ 
Sbjct: 356 KENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQS--LAHYGRPKIDGELK 413

Query: 462 RVTSGMWTNT-ITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKGRTD 518
             +    +      FL D  L+ CKR   + +++  K  +N+ + Q+ +   G     
Sbjct: 414 ITSVERRSKMDRYAFLLDKALLICKR---RGDSYDLKDFVNLHSFQVRDDSSGDRDNK 468

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406

 Score =  187 bits (477), Expect = 2e-54
 Identities = 65/310 (20%), Positives = 125/310 (40%), Gaps = 49/310 (15%)

Query: 225 LSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILA 284
           ++    R   +RE+  TE  +   L  + + ++   +R      P+ ++TIF N+E++ +
Sbjct: 20  MTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR---FLKPQDMETIFVNIEELFS 76

Query: 285 FQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIH---CSDKDKWL 341
             + FL++L+  L    P  + + + F+K+K  F             ++   CS  +   
Sbjct: 77  VHTHFLKELKDALAG--PGATTLYQVFIKYKERF------------LVYGRYCSQVESAS 122

Query: 342 LF---CCRSLEDKARWLAAFQQERALVEQDREDGLEFAPA---------AKELARMSAAR 389
                   + ED    L    Q          D L   P           +EL +     
Sbjct: 123 KHLDQVATAREDVQMKLEECSQRANNGRFTLRDLL-MVPMQRVLKYHLLLQELVK----- 176

Query: 390 CHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIE 449
            H+     D  +   +  AL+AMRD+A  +NE KR  E+L ++  +Q  +E  +    + 
Sbjct: 177 -HTQ----DATEKENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQS--LA 229

Query: 450 TSSQLIHQGEVIRVTSGMWTNT-ITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQII 508
              +    GE+   +    + T    FL D  L+ CKR   + +++  KA +N+ + Q+ 
Sbjct: 230 NYGRPKIDGELKITSVERRSKTDRYAFLLDKALLICKR---RGDSYDLKASVNLHSFQVR 286

Query: 509 NLPDGKGRTD 518
           +   G+    
Sbjct: 287 DDSSGERDNK 296

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score =  178 bits (453), Expect = 3e-52
 Identities = 63/322 (19%), Positives = 114/322 (35%), Gaps = 67/322 (20%)

Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQED 199
                ++D+ A   +EL F  G +I VL+  D DWW G      G FPS +V+L    + 
Sbjct: 3   CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDP 62

Query: 200 TVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAE 259
           + + C                   L   ++ R   + ELI TE ++V  L  V+E +  +
Sbjct: 63  SQQWC-----------SDLHLLDMLTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQ-K 110

Query: 260 CRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLE--TKLDWDAPYKSCIGETFLKHKSG 317
               +++ + +++  IF N ++++      L+ L    K+  +      IG+        
Sbjct: 111 PLTESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEKMPVKMIGDILSAQLPH 170

Query: 318 FHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAP 377
             P++                    FC                  AL++Q  ++  +F  
Sbjct: 171 MQPYIR-------------------FCSC-----------QLNGAALIQQKTDEAPDFKE 200

Query: 378 AAKELARMSAARCHS---------SRPP--------------TDHPDYVKITEALEAMRD 414
             K LA     +             R                 +HPD+  +  ALE   +
Sbjct: 201 FVKRLAMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEE 260

Query: 415 VAMLINERKRRMESLEKLAAWQ 436
           +   +NE  R  E+ ++L   Q
Sbjct: 261 LCSQVNEGVREKENSDRLEWIQ 282

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 60.2 bits (146), Expect = 3e-10
 Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 10/93 (10%)

Query: 7  VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAF-----EHLSQIIINHS 61
               ++D+ A   +EL F  G +I VL+  D DWW G            ++        
Sbjct: 3  CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDP 62

Query: 62 ISPNCDISKSLKRIRPHHALRRSVSQPLGINEL 94
              C     L  + P    R+       I+EL
Sbjct: 63 SQQWCSDLHLLDMLTPTERKRQGY-----IHEL 90

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Length = 1049

 Score =  190 bits (482), Expect = 4e-52
 Identities = 65/413 (15%), Positives = 136/413 (32%), Gaps = 60/413 (14%)

Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           +D    V   AV ++++ +  +L       I   +   +D                    
Sbjct: 122 IDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAM--------------- 166

Query: 194 RVSQEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVS 253
                D V   +          L         S +Q    +V+  +   R +++ L+ + 
Sbjct: 167 ---CADKVLMDMFHQDVEDINILSLTDEEPSTSGEQTYYDLVKAFMAEIRQYIRELNLII 223

Query: 254 EGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDW--DAPYKSCIGETF 311
           + +       + +FS   ++ IF  + DI       L  +E  ++   +      +G  F
Sbjct: 224 KVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGSPHPLVGSCF 283

Query: 312 --LKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDR 369
             L  +  F P+      +A  I         L         A +L +  +      Q  
Sbjct: 284 EDLAEELAFDPY----ESYARDILRPGFHDRFLSQLSKPG-AALYLQSIGEGFKEAVQYV 338

Query: 370 EDGLEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINE-------- 421
              L  AP    L      +    +   D  D   + +A+ A+ +V   + +        
Sbjct: 339 LPRLLLAPVYHCLHYFELLKQLEEKSE-DQEDKECLKQAITALLNVQSGMEKICSKSLAK 397

Query: 422 --------------RKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGM 467
                          K +  +++K+   Q+ ++GWEG+D+ +  ++ I +G + RV +  
Sbjct: 398 RRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTRVGAK- 456

Query: 468 WTNTITLFLFDHQLVYCKRDILKRNTHV-------YKARLNIDTSQIINLPDG 513
             +   +FLFD  ++ CK +  +             K +  +   QI +  D 
Sbjct: 457 --HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDT 507

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Length = 354

 Score =  173 bits (441), Expect = 6e-50
 Identities = 52/334 (15%), Positives = 113/334 (33%), Gaps = 64/334 (19%)

Query: 228 DQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQS 287
           +Q    +V+  +   R +++ L+ + + +       + +FS   ++ IF  + DI     
Sbjct: 1   EQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSV 60

Query: 288 SFLEDLETKLD--WDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDK----WL 341
             L  +E  ++   +      +G  F             +       +  D  +      
Sbjct: 61  KLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDPYES-------YARDILRPGFHDR 113

Query: 342 LFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAP---------AAKELARMSAARCHS 392
                S    A +L +  +      Q     L  AP           K+L   S      
Sbjct: 114 FLSQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKS------ 167

Query: 393 SRPPTDHPDYVKITEALEAMRDVAMLINE----------------------RKRRMESLE 430
                D  D   + +A+ A+ +V   + +                       K +  +++
Sbjct: 168 ----EDQEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIK 223

Query: 431 KLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILK 490
           K+   Q+ ++GWEG+D+ +  ++ I +G + RV +    +   +FLFD  ++ CK +  +
Sbjct: 224 KMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTRVGAK---HERHIFLFDGLMICCKSNHGQ 280

Query: 491 R-------NTHVYKARLNIDTSQIINLPDGKGRT 517
                     +  K +  +   QI +  D     
Sbjct: 281 PRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYK 314

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Length = 354

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 326 VRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQER 362
            +HA +I   D+   ++F  +S E+K  W+AA    +
Sbjct: 313 YKHAFEIILKDE-NSVIFSAKSAEEKNNWMAALISLQ 348

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434

 Score =  171 bits (435), Expect = 3e-48
 Identities = 57/318 (17%), Positives = 110/318 (34%), Gaps = 47/318 (14%)

Query: 218 RRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRR--------RNDMFSP 269
            R ++           + +EL+++E+ +V++L  ++  +     R          D  + 
Sbjct: 10  GRENLYFQGGQSRALVIAQELLSSEKAYVEMLQHLNLDFHGAVMRALDDMDHEGRDTLAR 69

Query: 270 EQIQTIFGNLEDILAFQSSFLEDLETKL-DWDAPYKSCIGETFLKHKSGFHPHLGVTVRH 328
           E+++     L  I       LE+LE +L +W++     + + FL  + GF  H       
Sbjct: 70  EELRQGLSELPAIHDLHQGILEELEERLSNWESQ--QKVADVFLAREQGFDHH------- 120

Query: 329 AIKIHCSDKDK---WLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAA------ 379
               H    D+    L   C      A  +  F+Q      Q  +  L            
Sbjct: 121 --ATHILQFDRYLGLLSENCLHSPRLAAAVREFEQSVQGGSQTAKHRL-LRVVQRLFQYQ 177

Query: 380 ---KELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQ 436
               +         +      D  +Y     AL  +  V    N+   + E+L+KL   +
Sbjct: 178 VLLTDYLN------NL---CPDSAEYDNTQGALSLISKVTDRANDSMEQGENLQKLVHIE 228

Query: 437 QRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVY 496
             V G    DL++   + + +G +++VT         LFL +  L+Y      K   +  
Sbjct: 229 HSVRGQ--GDLLQPGREFLKEGTLMKVTGK-NRRPRHLFLMNDVLLYTYPQ--KDGKYRL 283

Query: 497 KARLNIDTSQIINLPDGK 514
           K  L +   ++      K
Sbjct: 284 KNTLAVANMKVSRPVMEK 301

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 Length = 377

 Score =  168 bits (427), Expect = 1e-47
 Identities = 61/340 (17%), Positives = 119/340 (35%), Gaps = 67/340 (19%)

Query: 225 LSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILA 284
           LS+     +V+ EL+ TER +VK L+ + E YL   ++     + +++  +FGNL +++ 
Sbjct: 6   LSDADKLRKVICELLETERTYVKDLNCLMERYLKPLQKE-TFLTQDELDVLFGNLTEMVE 64

Query: 285 FQSSFLEDLE------------TKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKI 332
           FQ  FL+ LE             K+D        +G +FL +   F  +           
Sbjct: 65  FQVEFLKTLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYADRFKLY---------SA 115

Query: 333 HCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEF--APA---------AKE 381
            C+   K      ++  D A    AF   +   +Q       +   P           +E
Sbjct: 116 FCASHTKVPKVLVKAKTDTA--FKAFLDAQNPRQQHSSTLESYLIKPIQRVLKYPLLLRE 173

Query: 382 LARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEG 441
           L         +     +  ++  +  A++ M  VA  INE ++  E    +       + 
Sbjct: 174 LFA------LT---DAESEEHYHLDVAIKTMNKVASHINEMQKIHEEFGAVFDQLIAEQT 224

Query: 442 WEGEDLIETS-SQLIHQGEVIRVTSGMWTNTI------TLFLFDHQLVYCKRDILKR--- 491
            E +++ + S   L+    VI +                 F+F   +V   +D  K+   
Sbjct: 225 GEKKEVADLSMGDLLLHTSVIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQKKK 284

Query: 492 -------------NTHVYKARLNIDTSQIINLPDGKGRTD 518
                        +   ++  +  +  Q+  LP      +
Sbjct: 285 LVGSHRLSIYEEWDPFRFRHMIPTEALQVRALPSADAEAN 324

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A Length = 377

 Score =  153 bits (387), Expect = 7e-42
 Identities = 56/306 (18%), Positives = 106/306 (34%), Gaps = 48/306 (15%)

Query: 223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 282
           SL  +   R  V+ EL+ TE   V++L  + + +  +       F  E++Q IF +L+++
Sbjct: 20  SLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFF-QPMAECLFFPLEELQNIFPSLDEL 78

Query: 283 LAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL 342
           +   S FL+ L  +          IG+  L    G         +      CS +     
Sbjct: 79  IEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGS---WFQKISSRFCSRQSF--- 132

Query: 343 FCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRP------- 395
                L+ K R    F      V++         P  + L                    
Sbjct: 133 -ALEQLKAKQRKDPRFCA---FVQEAESR-----PRCRRLQLKD----MIPTEMQRLTKY 179

Query: 396 ----------PTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGW--- 442
                       +  +  K+  A E  R++   +N+  R ME L +L  +Q+R++     
Sbjct: 180 PLLLQSIGQNTEEPTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLR 239

Query: 443 --------EGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTH 494
                   E ++L  T  +L+H+G +    +      + + L D  L+  +R   +    
Sbjct: 240 QSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLK 299

Query: 495 VYKARL 500
            +   L
Sbjct: 300 SHSRTL 305

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score =  152 bits (386), Expect = 9e-41
 Identities = 50/333 (15%), Positives = 101/333 (30%), Gaps = 66/333 (19%)

Query: 223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 282
           ++   ++ R   + ELI TE  ++  L  V E +           +  ++  IF N +++
Sbjct: 20  TMQPIERKRQGYIHELIQTEERYMADLQLVVEVFQKRMAESG-FLTEGEMALIFVNWKEL 78

Query: 283 LAFQSSFLEDLET--KLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKW 340
           +   +  L+ L    K   +      IG+      S    +            CS +   
Sbjct: 79  IMSNTKLLKALRVRKKTGGEKMPVQMIGDILAAELSHMQAY---------IRFCSCQLN- 128

Query: 341 LLFCCRSLEDKARWLAAFQQERALVEQDRE-DGLEF-----AP---------AAKELARM 385
                  L+ K      F++    +  D    G+        P           + +   
Sbjct: 129 ---GAALLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPLLIRSILE- 184

Query: 386 SAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGE 445
                     P  H D+  +  ALE   ++   +NE  R  E+ ++L   Q  V+     
Sbjct: 185 --------NTPESHADHSSLKLALERAEELCSQVNEGVREKENSDRLEWIQAHVQCEGLA 236

Query: 446 --------DLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNT---- 493
                          +L+H G++ +  S      +  FLF+  L+          +    
Sbjct: 237 EQLIFNSLTNCLGPRKLLHSGKLYKTKSNK---ELHGFLFNDFLLLTYMVKQFAVSSGSE 293

Query: 494 -----------HVYKARLNIDTSQIINLPDGKG 515
                       +YK  + ++   +    D   
Sbjct: 294 KLFSSKSNAQFKMYKTPIFLNEVLVKLPTDPSS 326

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score =  152 bits (385), Expect = 2e-40
 Identities = 56/306 (18%), Positives = 104/306 (33%), Gaps = 48/306 (15%)

Query: 223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 282
           SL  +   R  V+ EL+ TE   V++L  + + +  +       F  E++Q IF +L+++
Sbjct: 173 SLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFF-QPMAECLFFPLEELQNIFPSLDEL 231

Query: 283 LAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL 342
           +   S FL+ L  +          IG+  L    G         +      CS +     
Sbjct: 232 IEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGS---WFQKISSRFCSRQSF--- 285

Query: 343 FCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRP------- 395
                L+ K R    F       E          P  + L                    
Sbjct: 286 -ALEQLKAKQRKDPRFCAFVQEAESR--------PRCRRLQLKD----MIPTEMQRLTKY 332

Query: 396 ----------PTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGW--- 442
                       +  +  K+  A E  R++   +N+  R ME L +L  +Q+R++     
Sbjct: 333 PLLLQSIGQNTEEPTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLR 392

Query: 443 --------EGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTH 494
                   E ++L  T  +L+H+G +    +      + + L D  L+  +R   +    
Sbjct: 393 QSSDPMLSEFKNLDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLK 452

Query: 495 VYKARL 500
            +   L
Sbjct: 453 SHSRTL 458

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A* Length = 368

 Score =  146 bits (369), Expect = 2e-39
 Identities = 47/300 (15%), Positives = 111/300 (37%), Gaps = 44/300 (14%)

Query: 223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 282
            L   +  R  V+ EL  TE   ++ L  +   +  +  ++ ++   E++  +F NL ++
Sbjct: 14  GLTQREIDRQEVINELFVTEASHLRTLRVLDLIFY-QRMKKENLMPREELARLFPNLPEL 72

Query: 283 LAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL 342
           +   +S+ E ++   + + P    I +  L    G        ++      CS +     
Sbjct: 73  IEIHNSWCEAMKKLRE-EGPIIKEISDLMLARFDGPA---REELQQVAAQFCSYQSI--- 125

Query: 343 FCCRSLEDKARWLAAFQQERALVEQDRE-DGLEF-----APA---------AKELARMSA 387
                ++ K R  + FQ      E   +   L+      +            + + + + 
Sbjct: 126 -ALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHT- 183

Query: 388 ARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGW----- 442
                        ++ K+  A +  R++   +NE  ++ E+  +L  +Q+R++       
Sbjct: 184 --------EGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERA 235

Query: 443 ------EGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVY 496
                 E + L  T+ ++IH+G +    S   T  + + L +  LV  ++   K     +
Sbjct: 236 SNPLAAEFKSLDLTTRKMIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCH 295

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A Length = 385

 Score =  144 bits (364), Expect = 1e-38
 Identities = 60/329 (18%), Positives = 113/329 (34%), Gaps = 55/329 (16%)

Query: 223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 282
            L   +  R  V+ EL  TER  V+ L  + + +  +   R  + SP +++ IF NLEDI
Sbjct: 17  GLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFY-QRVSREGILSPSELRKIFSNLEDI 75

Query: 283 LAFQSSFLEDLETKLDWD-APYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWL 341
           L       E ++     +       IGE  L   SG        ++HA    CS++    
Sbjct: 76  LQLHIGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPG---EEKLKHAAATFCSNQPF-- 130

Query: 342 LFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRP------ 395
                 ++ + +  + FQ      E +        P  + L                   
Sbjct: 131 --ALEMIKSRQKKDSRFQTFVQDAESN--------PLCRRLQLKD----IIPTQMQRLTK 176

Query: 396 -----------PTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGW-- 442
                           +  K+ +A +  R +   +N+  +  E+ ++L  +Q+R++    
Sbjct: 177 YPLLLDNIAKYTEWPTEREKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDTSSL 236

Query: 443 ---------EGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILK--- 490
                    E  +L  T  ++IH+G ++   +   T  +   L +  LV  ++   +   
Sbjct: 237 KLSEYPNVEELRNLDLTKRKMIHEGPLVWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVL 296

Query: 491 ---RNTHVYKARLNIDTSQIINLPDGKGR 516
                     A      S +I L     R
Sbjct: 297 RCHSKILASTADSKHTFSPVIKLSTVLVR 325

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens} Length = 354

 Score =  142 bits (359), Expect = 3e-38
 Identities = 45/303 (14%), Positives = 103/303 (33%), Gaps = 50/303 (16%)

Query: 231 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFS-PEQIQTIFGNLEDILAFQSSF 289
              V+ EL+ TE+ +V  L  + EGY+A    +    S   + + +FGN++ I  +   +
Sbjct: 13  SMYVLSELVETEKMYVDDLGQIVEGYMATMAAQGVPESLRGRDRIVFGNIQQIYEWHRDY 72

Query: 290 LEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRH--AIKIHCSDKDKWLLFCCRS 347
                 +   D      + + F+KH+   H ++        +  +     D +     + 
Sbjct: 73  FLQELQRCLKDPD---WLAQLFIKHERRLHMYVVYCQNKPKSEHVVSEFGDSYFEELRQQ 129

Query: 348 LEDKARWLAAFQQE--------RALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTDH 399
           L  + + L     +        + L+              K+  +               
Sbjct: 130 LGHRLQ-LNDLLIKPVQRIMKYQLLL--------------KDFLKYY---------NRAG 165

Query: 400 PDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGE 459
            D   + +A+E M  V    N+    M +L +L  ++ ++       L+   +  + + E
Sbjct: 166 MDTADLEQAVEVMCFVPKRCND----MMTLGRLRGFEGKLTAQ--GKLLGQDTFWVTEPE 219

Query: 460 VIRVTSGMWTNTITLFLFDHQLVYCKR-----DILKRNTHVYKARLNIDTSQIINLPDGK 514
              + S        +FLF+  +++ +          +  +VYK  + +    +     G 
Sbjct: 220 AGGLLSS-RGRERRVFLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGNLQGD 278

Query: 515 GRT 517
              
Sbjct: 279 PCR 281

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens} Length = 418

 Score =  142 bits (360), Expect = 8e-38
 Identities = 46/300 (15%), Positives = 110/300 (36%), Gaps = 44/300 (14%)

Query: 223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 282
            L   +  R  V+ EL  TE   ++ L  +   +  +  ++ ++   E++  +F NL ++
Sbjct: 56  GLTQREIDRQEVINELFVTEASHLRTLRVLDLIFY-QRMKKENLMPREELARLFPNLPEL 114

Query: 283 LAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL 342
           +   +S+ E ++   + + P    I +  L    G        ++      CS +     
Sbjct: 115 IEIHNSWCEAMKKLRE-EGPIIKEISDLMLARFDGPA---REELQQVAAQFCSYQSI--- 167

Query: 343 FCCRSLEDKARWLAAFQQERALVEQDREDG----LEFAPA-----------AKELARMSA 387
                ++ K R  + FQ      E   +       +   +            + + + + 
Sbjct: 168 -ALELIKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHT- 225

Query: 388 ARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEG------ 441
                        ++ K+  A +  R++   +NE  ++ E+  +L  +Q+R++       
Sbjct: 226 --------EGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERA 277

Query: 442 -----WEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVY 496
                 E + L  T+ ++IH+G +    S   T  + + L +  LV  ++   K     +
Sbjct: 278 SNPLAAEFKSLDLTTRKMIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCH 337

>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1 Length = 209

 Score =  136 bits (345), Expect = 1e-37
 Identities = 41/235 (17%), Positives = 77/235 (32%), Gaps = 50/235 (21%)

Query: 223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 282
           +   N    + V++ ++ TE ++ K L  V   YL   +   +  S   I  + GNLE+I
Sbjct: 6   TTAINKSYYNVVLQNILETENEYSKELQTVLSTYLRPLQTS-EKLSSANISYLMGNLEEI 64

Query: 283 LAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIH---CSDKDK 339
            +FQ   ++ LE         +  +G  FL                   ++   C++   
Sbjct: 65  CSFQQMLVQSLEECTK-LPEAQQRVGGCFLNLMPQMK-----------TLYLTYCANHPS 112

Query: 340 WLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAA----------------KELA 383
                   L + +  L  F + +          L                      KEL 
Sbjct: 113 ----AVNVLTEHSEELGEFMETKGASSPGILV-LT----TGLSKPFMRLDKYPTLLKELE 163

Query: 384 RMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQR 438
           R      H       H D   I +++ A ++++    E ++R E   ++     R
Sbjct: 164 R------HM---EDYHTDRQDIQKSMAAFKNLSAQCQEVRKRKELELQILTEAIR 209

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A Length = 353

 Score =  135 bits (340), Expect = 1e-35
 Identities = 58/317 (18%), Positives = 106/317 (33%), Gaps = 57/317 (17%)

Query: 226 SNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRN-----DMFSPEQIQTIFGNLE 280
           S   +R  V+ EL++TER +V+ L  V EGY AE                +   +FGN+E
Sbjct: 7   SLAILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNME 66

Query: 281 DILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLG--VTVRHAIKIHCSDKD 338
           +I  F +            D P    +G  FL+    F  +         +  +     D
Sbjct: 67  EIYHFHNRIFLRELESC-IDCP--ELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQCSD 123

Query: 339 KWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTD 398
                 C+   D    L ++  +   V++  +  L      KE+ + S            
Sbjct: 124 CPFFQECQKKLDHKLSLDSYLLK--PVQRITKYQLLL----KEMLKYSK----------H 167

Query: 399 HPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQG 458
                 + EAL ++  +   +N+                 + G++G   +    +L+ QG
Sbjct: 168 CEGAEDLQEALSSILGILKAVNDSMH-----------LIAITGYDGN--LGDLGKLLMQG 214

Query: 459 EVI------------RVTSGMWTNTITLFLFDHQLVYCKR------DILKRNTHVYKARL 500
                          +  +        LFL +  +++CK+         K  ++ YK  L
Sbjct: 215 SFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSL 274

Query: 501 NIDTSQIINLPDGKGRT 517
           N+    I     G  + 
Sbjct: 275 NMTAVGITENVKGDTKK 291

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A Length = 311

 Score =  132 bits (333), Expect = 6e-35
 Identities = 54/308 (17%), Positives = 111/308 (36%), Gaps = 57/308 (18%)

Query: 226 SNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPE---QIQTIFGNLEDI 282
            + + +  ++ ELI TE+ +V+ L +  + YL E     +   P    +   IFGN+++I
Sbjct: 5   KSARRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEI 64

Query: 283 LAFQSS-FLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRH--AIKIHCSDKDK 339
             F ++ FL++LE            +G  F+     F  ++        + ++       
Sbjct: 65  YEFHNNIFLKELEKYEQLPE----DVGHCFVTWADKFQMYVTYCKNKPDSTQLILEHAGS 120

Query: 340 WLLFCCRSLEDKARWLAAFQQE--------RALVEQDREDGLEFAPAAKELARMSAARCH 391
           +     +        ++++  +        + L+              KEL         
Sbjct: 121 YFDEIQQRHGLANS-ISSYLIKPVQRITKYQLLL--------------KELLTCC----- 160

Query: 392 SSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETS 451
                    +     + LE M  V    N+          L  + + +E  +GE +++ S
Sbjct: 161 ----EEGKGEI---KDGLEVMLSVPKRANDAMHL----SMLEGFDENIE-SQGELILQES 208

Query: 452 SQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCK--RDILKRNTHVYKARLNIDTSQIIN 509
            Q+     +IR           LFLF+  LV+ K  +D   R+ ++YK++L      +  
Sbjct: 209 FQVWDPKTLIR-----KGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTE 263

Query: 510 LPDGKGRT 517
             +G    
Sbjct: 264 HVEGDPCK 271

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A Length = 346

 Score =  110 bits (276), Expect = 7e-27
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 396 PTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLI 455
           P D+PD   + EA+  ++ +   IN +    E           +E  + + LI++S  L 
Sbjct: 175 PNDNPDQQHLEEAINIIQGIVAEINTKTGESECRYYK-ERLLYLEEGQKDSLIDSSRVLC 233

Query: 456 HQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNT--HVYKARLNIDTSQIINLPDG 513
             GE+           + +FLF   LV  +           +Y+  + +    + +L DG
Sbjct: 234 CHGELKNNRG----VKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDG 289

Query: 514 KGR 516
           + R
Sbjct: 290 EVR 292

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A Length = 346

 Score = 93.3 bits (232), Expect = 6e-21
 Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 2/109 (1%)

Query: 212 GSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQ 271
           GS       +  L + +  R   + EL   E D ++ L    + Y     + + + + ++
Sbjct: 1   GSSGSSGCVNQVLTAKEIKRQEAIFELSQGEEDLIEDLKLAKKAYHDPMLKLS-IMTEQE 59

Query: 272 IQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHP 320
           +  IFG L+ ++      L  L             +G   +        
Sbjct: 60  LNQIFGTLDSLIPLHEELLSQLRDVRK-PDGSTEHVGPILVGWLPCLSS 107

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 93.6 bits (233), Expect = 1e-23
 Identities = 42/73 (57%), Positives = 54/73 (73%), Gaps = 1/73 (1%)

Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
           +V AEAVWDHV M   EL F+AGDVI+VLD  ++DWWWG   +  GWFP++FVRL V+QE
Sbjct: 10  IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQE 69

Query: 199 DTVEDCLAALASG 211
           D VE+  +  +SG
Sbjct: 70  DEVEEG-SGPSSG 81

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 65.5 bits (160), Expect = 1e-13
 Identities = 26/40 (65%), Positives = 31/40 (77%)

Query: 6  VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          +V AEAVWDHV M   EL F+AGDVI+VLD  ++DWWWG 
Sbjct: 10 IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQ 49

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 79.5 bits (196), Expect = 1e-18
 Identities = 17/68 (25%), Positives = 33/68 (48%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVED 203
               +  ++  E+ F AG  ++VL+  +  WW+   GE  GW PS ++ L  +++     
Sbjct: 13  TCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQPDPSG 72

Query: 204 CLAALASG 211
             +  +SG
Sbjct: 73  KESGPSSG 80

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 9/37 (24%), Positives = 18/37 (48%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
              +  ++  E+ F AG  ++VL+  +  WW+   G
Sbjct: 13 TCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFG 49

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 79.0 bits (195), Expect = 2e-18
 Identities = 26/79 (32%), Positives = 39/79 (49%)

Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASG 184
           S SS + + ++        A++D  A+E  EL F+ G++I VLD  D +WW G      G
Sbjct: 3   SGSSGSEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIG 62

Query: 185 WFPSAFVRLRVSQEDTVED 203
            FPS FV   ++ E     
Sbjct: 63  LFPSNFVTTNLNIETEAAA 81

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 57.8 bits (140), Expect = 7e-11
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
            A++D  A+E  EL F+ G++I VLD  D +WW G 
Sbjct: 20 VRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGE 56

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 79.3 bits (195), Expect = 4e-17
 Identities = 47/212 (22%), Positives = 72/212 (33%), Gaps = 37/212 (17%)

Query: 11  AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH-SISPNCDIS 69
           A +D  A   +EL F+ GD+++VL+      W+  + E       I  N+  + P+    
Sbjct: 5   AKYDFKATADDELSFKRGDILKVLNEECDQNWY--KAELNGKDGFIPKNYIEMKPHPWFF 62

Query: 70  KSLKRIRPHHAL-----------RRSVSQPLGINELS-------------------PLLR 99
             + R +    L           R S S P G   LS                     L 
Sbjct: 63  GKIPRAKAEEMLSKQRHDGAFLIRESESAP-GDFSLSVKFGNDVQHFKVLRDGAGKYFLW 121

Query: 100 RKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFR 159
                +           S        +  +  +          +A++D    E  ELGFR
Sbjct: 122 VVKFNSLNELVDYHRSTSVSRN---QQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFR 178

Query: 160 AGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
            GD I V+D  D +WW G     +G FP  +V
Sbjct: 179 RGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 210

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 52.4 bits (125), Expect = 6e-08
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAFVR 192
           A +D  A   +EL F+ GD+++VL+      W+        G+ P  ++ 
Sbjct: 5   AKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE 54

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 9   AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
            +A++D    E  ELGFR GD I V+D  D +WW G 
Sbjct: 161 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGA 197

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 72.4 bits (178), Expect = 3e-16
 Identities = 21/63 (33%), Positives = 29/63 (46%)

Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
           VV A A + +    A+EL FR GDV+ + +    DWW G      G  P  ++ L    E
Sbjct: 10  VVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTE 69

Query: 199 DTV 201
             V
Sbjct: 70  KQV 72

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 6  VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          VV A A + +    A+EL FR GDV+ + +    DWW G 
Sbjct: 10 VVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGE 49

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 72.3 bits (178), Expect = 3e-16
 Identities = 15/67 (22%), Positives = 34/67 (50%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDT 200
           L  A++D+      E+  + GD++ +L++ ++DWW     +  G+ P+A+V+     +  
Sbjct: 7   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPAQSA 66

Query: 201 VEDCLAA 207
             + L  
Sbjct: 67  SRENLGG 73

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 54.6 bits (132), Expect = 6e-10
 Identities = 10/38 (26%), Positives = 22/38 (57%)

Query: 8  LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          L  A++D+      E+  + GD++ +L++ ++DWW   
Sbjct: 7  LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE 44

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 71.8 bits (177), Expect = 3e-16
 Identities = 23/52 (44%), Positives = 34/52 (65%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           A A++D  A+E +ELGFR+G+V+EVLD+ +  WW G      G FP+ +V  
Sbjct: 4   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 57.9 bits (141), Expect = 3e-11
 Identities = 19/37 (51%), Positives = 28/37 (75%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A A++D  A+E +ELGFR+G+V+EVLD+ +  WW G 
Sbjct: 4  ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGR 40

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 71.4 bits (176), Expect = 4e-16
 Identities = 23/52 (44%), Positives = 34/52 (65%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           AEA++D       EL F+AGDVI +L  +++DW  GT   A+G FP +FV++
Sbjct: 7   AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI 58

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 56.0 bits (136), Expect = 1e-10
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          AEA++D       EL F+AGDVI +L  +++DW  GT
Sbjct: 7  AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT 43

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 71.3 bits (175), Expect = 7e-16
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 201
           A  +  + A    E+  + GD++ +L++ ++DWW     +  G+ P+A+V+ ++      
Sbjct: 3   APPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK-KLDSGTGK 60

Query: 202 EDCLAAL 208
           E  LA  
Sbjct: 61  ELVLALY 67

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 51.2 bits (123), Expect = 8e-09
 Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          A  +  + A    E+  + GD++ +L++ ++DWW  
Sbjct: 3  APPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKV 37

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 70.7 bits (174), Expect = 1e-15
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
             A++  V  E E+L  R GD+I +L+  + DWW G   +  G+FP+ FV+ 
Sbjct: 10  YVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQR 61

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
            A++  V  E E+L  R GD+I +L+  + DWW G 
Sbjct: 10 YVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGK 46

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 70.7 bits (174), Expect = 1e-15
 Identities = 17/50 (34%), Positives = 25/50 (50%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
             A+ D+ A +  +L F  G+ I +L     DWWWG R    G+ P+  V
Sbjct: 10  FVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHV 59

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
            A+ D+ A +  +L F  G+ I +L     DWWWG R 
Sbjct: 10 FVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERA 48

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 75.8 bits (185), Expect = 3e-15
 Identities = 27/187 (14%), Positives = 54/187 (28%), Gaps = 19/187 (10%)

Query: 13  WDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISKSL 72
           +D    +AE+L F+ G+++ +++  +  WW     +    +  I + + +      S   
Sbjct: 132 YDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGM--IPVPY-VEKLVRSSPHG 188

Query: 73  KRIRPHHALRRSVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSL 132
           K    +              +         +   PG     L  +               
Sbjct: 189 KHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPST--------------- 233

Query: 133 GMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
             +      A       A +   L    GD+++V        W G      G FP   V+
Sbjct: 234 -QNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVK 292

Query: 193 LRVSQED 199
           +   Q  
Sbjct: 293 IFDPQNP 299

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 53.5 bits (127), Expect = 6e-08
 Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 4/144 (2%)

Query: 146 WDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVSQEDTVEDC 204
           +D    +AE+L F+ G+++ +++  +  WW    +    G  P  +V   V      +  
Sbjct: 132 YDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHG 191

Query: 205 LAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRN 264
                S G        +             V          +    +      A  +R  
Sbjct: 192 NRNSNSYGIPEPAHAYAQ---PQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVP 248

Query: 265 DMFSPEQIQTIFGNLEDILAFQSS 288
             +    +    G++  +     +
Sbjct: 249 CAYDKTALALEVGDIVKVTRMNIN 272

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 15/55 (27%), Positives = 24/55 (43%)

Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
            + A A +D+V   A EL F+ G  + +      DWW G      G  P  ++ +
Sbjct: 9   PIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVV 63

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 6  VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
           + A A +D+V   A EL F+ G  + +      DWW G 
Sbjct: 9  PIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGR 48

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 68.7 bits (169), Expect = 3e-15
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
            +A++D    E+ EL F+ GDVI +++  D +WW G      G FPS +V 
Sbjct: 5   VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC 55

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 55.2 bits (134), Expect = 2e-10
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
           +A++D    E+ EL F+ GDVI +++  D +WW G 
Sbjct: 5  VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQ 41

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 68.8 bits (169), Expect = 4e-15
 Identities = 23/55 (41%), Positives = 32/55 (58%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 196
             A++D  A+E  EL F+ G++I VLD  D +WW G     +G FPS FV   +S
Sbjct: 8   VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTDLS 62

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
            A++D  A+E  EL F+ G++I VLD  D +WW G 
Sbjct: 8  VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGE 44

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 70.1 bits (172), Expect = 4e-15
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 120 ELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 179
           +LL  S    T        V+   A++D+ A   +EL F  G +I V++  D DWW G  
Sbjct: 18  KLLGPSSERATPAFHPVCQVI---AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEI 74

Query: 180 GEASGWFPSAFVRLRVSQED 199
              +G FPS +V++      
Sbjct: 75  NGVTGLFPSNYVKMTTDSSG 94

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 52.8 bits (127), Expect = 4e-09
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
            A++D+ A   +EL F  G +I V++  D DWW G 
Sbjct: 37 VIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGE 73

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 69.3 bits (170), Expect = 5e-15
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 201
           A+A+ D    + +ELGFR  D+I ++   D   W G      GWFP+ FV + + +    
Sbjct: 10  AKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEV-LDERSKE 68

Query: 202 EDCLAALASG 211
               +  +SG
Sbjct: 69  YSIASGPSSG 78

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 52.3 bits (126), Expect = 4e-09
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A+A+ D    + +ELGFR  D+I ++   D   W G 
Sbjct: 10 AKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGE 46

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 68.8 bits (169), Expect = 5e-15
 Identities = 16/60 (26%), Positives = 32/60 (53%)

Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           MDE    L   ++D+      EL  + GD++ +L++ ++DWW        G+ P+A+++ 
Sbjct: 1   MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKK 60

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 54.2 bits (131), Expect = 7e-10
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 1  MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          MDE    L   ++D+      EL  + GD++ +L++ ++DWW   
Sbjct: 1  MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIE 45

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 68.1 bits (167), Expect = 7e-15
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 151 MEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLA 206
           M   E+  + GD++ +L++ ++DWW     +  G+ P+A+V+ ++      E  LA
Sbjct: 1   MGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK-KLDSGTGKELVLA 55

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 48.9 bits (117), Expect = 5e-08
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 18 MEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          M   E+  + GD++ +L++ ++DWW   
Sbjct: 1  MGPREVTMKKGDILTLLNSTNKDWWKVE 28

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 68.7 bits (168), Expect = 7e-15
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 150 AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALA 209
           AM   E+  + GD++ +L++ ++DWW     +  G+ P+A+V+ ++      E  LA   
Sbjct: 2   AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK-KLDSGTGKELVLALYD 60

Query: 210 S 210
            
Sbjct: 61  Y 61

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 17 AMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          AM   E+  + GD++ +L++ ++DWW   
Sbjct: 2  AMGPREVTMKKGDILTLLNSTNKDWWKVE 30

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 69.0 bits (169), Expect = 7e-15
 Identities = 17/75 (22%), Positives = 35/75 (46%)

Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASG 184
                   G DE    L  A++D+      E+  + GD++ +L++ ++DWW     +  G
Sbjct: 3   GSHHHHHHGSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQG 62

Query: 185 WFPSAFVRLRVSQED 199
           + P+A+V+   +   
Sbjct: 63  FVPAAYVKKLAAAWS 77

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 51.6 bits (124), Expect = 8e-09
 Identities = 12/44 (27%), Positives = 24/44 (54%)

Query: 2  DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          DE    L  A++D+      E+  + GD++ +L++ ++DWW   
Sbjct: 13 DETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE 56

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 68.0 bits (167), Expect = 8e-15
 Identities = 21/52 (40%), Positives = 28/52 (53%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
            +A++D    E  ELGFR GD I V+D  D +WW G     +G FP  +V  
Sbjct: 5   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTA 56

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 53.7 bits (130), Expect = 7e-10
 Identities = 17/37 (45%), Positives = 22/37 (59%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
           +A++D    E  ELGFR GD I V+D  D +WW G 
Sbjct: 5  VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGA 41

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 74.1 bits (181), Expect = 9e-15
 Identities = 25/197 (12%), Positives = 52/197 (26%), Gaps = 45/197 (22%)

Query: 9   AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDI 68
               +        +L F  G+ +E+L   ++DWW                          
Sbjct: 150 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEA------------------------ 185

Query: 69  SKSLKRIRPHHALRRSVSQPLGI---N--ELSPLLRRKPIGTRPGDGTNSLCCSDDELLS 123
                         R+     G+   N  ++                +        E  S
Sbjct: 186 --------------RNALGTTGLVPANYVQIQMEFHNDRTSKGASQSSIGSSGGGAERFS 231

Query: 124 DSESSVTSLGMDEDFVVLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 181
            + +S  ++ +       A+  +D V  A +  +L  + G  + V   +    +      
Sbjct: 232 SASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDG 291

Query: 182 ASGWFPSAFVRLRVSQE 198
             G  P  ++R     E
Sbjct: 292 QIGSVPHTYLRFTAVSE 308

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 63.3 bits (153), Expect = 3e-11
 Identities = 27/189 (14%), Positives = 64/189 (33%), Gaps = 14/189 (7%)

Query: 20  AEELGFRAGDVIEVLDTLD-RDWWWG--TRGEAFEHLSQ-------IIINHSISPNCDIS 69
              +           D  + R +++   +R EA + L +        ++  S  P  + S
Sbjct: 21  MASMTGGQQMTTNGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRPG-EYS 79

Query: 70  KSLKRIRPHHALRRSVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSV 129
            +++     +A+   + +     E         I  +      +L       +    S +
Sbjct: 80  LTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLL 139

Query: 130 TSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-ASGWFPS 188
            +       VV     +        +L F  G+ +E+L   ++DWW        +G  P+
Sbjct: 140 AAYKKPIIEVV--VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPA 197

Query: 189 AFVRLRVSQ 197
            +V++++  
Sbjct: 198 NYVQIQMEF 206

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 130 TSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFP 187
           +S      +V+   A+  ++      L F  GD+I++L   TL+  W +G+ G  SG FP
Sbjct: 2   SSGSSGSGYVI---ALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFP 58

Query: 188 SAFVRL 193
           +  V+ 
Sbjct: 59  ADIVQP 64

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 51.7 bits (124), Expect = 8e-09
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGT 45
            A+  ++      L F  GD+I++L   TL+  W +G+
Sbjct: 11 VIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGS 49

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 73.8 bits (180), Expect = 1e-14
 Identities = 30/196 (15%), Positives = 54/196 (27%), Gaps = 32/196 (16%)

Query: 10  EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH--SISPNCD 67
            A++D    + E+L F+ GD++ + D  +  WW     E    +  I + +     P   
Sbjct: 138 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGM--IPVPYVEKYRPASA 195

Query: 68  ISKSLKRIRPHHALRRSVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSES 127
              +L       +  + +  P       P +       + G                   
Sbjct: 196 SVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYAR-------------- 241

Query: 128 SVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFP 187
                                 A +   L    G++++V        W G      G FP
Sbjct: 242 --------------VIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFP 287

Query: 188 SAFVRLRVSQEDTVED 203
              VRL   Q    + 
Sbjct: 288 FTHVRLLDQQNPEEDF 303

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 55.7 bits (133), Expect = 1e-08
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 1/110 (0%)

Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-ASGWFPSAFVRLRVSQEDTV 201
            A++D    + E+L F+ GD++ + D  +  WW     E   G  P  +V        +V
Sbjct: 138 RALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASV 197

Query: 202 EDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHD 251
              +     G              +   V + +           V     
Sbjct: 198 SALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRV 247

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 67.2 bits (165), Expect = 1e-14
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
           V +  A++       +EL F  GD+I + D  D +WW GT    +G  PS +V 
Sbjct: 3   VKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 56

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 52.1 bits (126), Expect = 3e-09
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 6  VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          V +  A++       +EL F  GD+I + D  D +WW GT
Sbjct: 3  VKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGT 42

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 67.8 bits (166), Expect = 1e-14
 Identities = 17/70 (24%), Positives = 33/70 (47%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 201
            +A++   A + +EL    GD++ + +  +  WW+G+     G FP+A+V    S     
Sbjct: 10  CKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAGNT 69

Query: 202 EDCLAALASG 211
               +  +SG
Sbjct: 70  ATKASGPSSG 79

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 9/37 (24%), Positives = 21/37 (56%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
           +A++   A + +EL    GD++ + +  +  WW+G+
Sbjct: 10 CKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGS 46

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 67.8 bits (166), Expect = 1e-14
 Identities = 24/74 (32%), Positives = 37/74 (50%)

Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASG 184
           S SS T    + D  + A A++D+ A   +E+ F   D+I  ++ +D  WW G      G
Sbjct: 3   SGSSGTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYG 62

Query: 185 WFPSAFVRLRVSQE 198
            FP+ +V LR S  
Sbjct: 63  LFPANYVELRQSGP 76

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A A++D+ A   +E+ F   D+I  ++ +D  WW G 
Sbjct: 20 AVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV 56

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 67.2 bits (165), Expect = 1e-14
 Identities = 17/54 (31%), Positives = 26/54 (48%)

Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
             +  A++       +EL F  GD+I + D  D +WW GT    +G  PS +V 
Sbjct: 7   GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 60

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 52.6 bits (127), Expect = 2e-09
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 6  VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
            +  A++       +EL F  GD+I + D  D +WW GT
Sbjct: 7  GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGT 46

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 23/52 (44%), Positives = 30/52 (57%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
             A++D  A E  EL F+AG++I VLD  D +WW G   +  G FPS FV  
Sbjct: 20  VRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTA 71

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 17/37 (45%), Positives = 23/37 (62%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
            A++D  A E  EL F+AG++I VLD  D +WW G 
Sbjct: 20 VRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGE 56

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 18/69 (26%), Positives = 31/69 (44%)

Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASG 184
           S SS         ++    A++D+   + +EL F+ G +I V+   D  W+ G     +G
Sbjct: 3   SGSSGDPPWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTG 62

Query: 185 WFPSAFVRL 193
            FP  +V  
Sbjct: 63  LFPGNYVES 71

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
            A++D+   + +EL F+ G +I V+   D  W+ G 
Sbjct: 20 VVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGV 56

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 14/50 (28%), Positives = 28/50 (56%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
              V ++   E  EL  +AG+V++V++  +  WW+ +  E  GW P+ ++
Sbjct: 11  YVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYL 60

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
             V ++   E  EL  +AG+V++V++  +  WW+ +  
Sbjct: 11 YVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTS 49

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 67.0 bits (164), Expect = 2e-14
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVL---DTLDRDWWWGTRGEASGWFPSAFVRLRVS 196
           VLA+A++D+VA   +EL FR GD++ VL         WW  +     G  P   +++ V 
Sbjct: 4   VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVG 63

Query: 197 QED 199
             D
Sbjct: 64  MYD 66

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 7  VLAEAVWDHVAMEAEELGFRAGDVIEVL---DTLDRDWWWGT 45
          VLA+A++D+VA   +EL FR GD++ VL         WW  +
Sbjct: 4  VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCS 45

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 66.4 bits (163), Expect = 3e-14
 Identities = 14/51 (27%), Positives = 30/51 (58%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
            EA++     +  +LG + GD +++L+ L  +W+ G+    +G FP+ +V+
Sbjct: 5   VEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVK 55

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 53.3 bits (129), Expect = 9e-10
 Identities = 10/37 (27%), Positives = 22/37 (59%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
           EA++     +  +LG + GD +++L+ L  +W+ G+
Sbjct: 5  VEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGS 41

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 66.5 bits (163), Expect = 3e-14
 Identities = 15/52 (28%), Positives = 30/52 (57%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
            + +++++    +EL  + GD+I++ + ++  WW GT     G FPS FV+ 
Sbjct: 10  CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKE 61

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 9/37 (24%), Positives = 23/37 (62%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
           + +++++    +EL  + GD+I++ + ++  WW GT
Sbjct: 10 CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGT 46

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 66.1 bits (162), Expect = 3e-14
 Identities = 15/58 (25%), Positives = 31/58 (53%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQED 199
            + +++++    +EL  + GD+I++ + ++  WW GT     G FPS FV+    +  
Sbjct: 4   CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELEHH 61

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 9/37 (24%), Positives = 23/37 (62%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
           + +++++    +EL  + GD+I++ + ++  WW GT
Sbjct: 4  CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGT 40

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 66.6 bits (163), Expect = 4e-14
 Identities = 25/72 (34%), Positives = 38/72 (52%)

Query: 122 LSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 181
           ++          MD      AEA++D       EL F+AGDVI +L  +++DW  GT   
Sbjct: 1   MNHKVHHHHHHHMDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRG 60

Query: 182 ASGWFPSAFVRL 193
           A+G FP +FV++
Sbjct: 61  ATGIFPLSFVKI 72

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          AEA++D       EL F+AGDVI +L  +++DW  GT
Sbjct: 21 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGT 57

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 67.1 bits (164), Expect = 4e-14
 Identities = 16/60 (26%), Positives = 31/60 (51%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 201
            +  + ++    +EL  + GD+IEV+  ++  WW G     +G FPS F++    + D +
Sbjct: 21  CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGESDEL 80

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
           +  + ++    +EL  + GD+IEV+  ++  WW G 
Sbjct: 21 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV 57

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 66.7 bits (163), Expect = 5e-14
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)

Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVL----DTLDRDWWWGT-R 179
           S SS T+    ED  V+A A +D VA+  EE+ FRAGD++ +         R W   +  
Sbjct: 3   SGSSGTNWASGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLD 62

Query: 180 GEASGWFPSAFVRL 193
           G+ +G  P+ +V++
Sbjct: 63  GQTTGLIPANYVKI 76

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 2  DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVL----DTLDRDWWWGT 45
           ED  V+A A +D VA+  EE+ FRAGD++ +         R W   +
Sbjct: 13 GEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLAS 60

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 65.7 bits (161), Expect = 6e-14
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
              ++  V    EEL    G+++ VL   + +W         G  P  ++
Sbjct: 10  HRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYL 59

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 51.4 bits (124), Expect = 6e-09
 Identities = 8/38 (21%), Positives = 15/38 (39%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
             ++  V    EEL    G+++ VL   + +W     
Sbjct: 10 HRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMF 47

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 66.4 bits (162), Expect = 6e-14
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 7/78 (8%)

Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHV-AMEAEELGFRAGDVIEVLDTLDRDWWWG---- 177
           S       S G+     +   A+ D     +   L  RAGDVI VL+      W G    
Sbjct: 2   SSHHHHHHSSGLVPRGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHE 61

Query: 178 --TRGEASGWFPSAFVRL 193
                +  G+FP   V +
Sbjct: 62  SQRGTDRIGYFPPGIVEV 79

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 49.9 bits (119), Expect = 3e-08
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 9  AEAVWDHV-AMEAEELGFRAGDVIEVLDTLDRDWWWG 44
            A+ D     +   L  RAGDVI VL+      W G
Sbjct: 21 VRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKG 57

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 65.3 bits (160), Expect = 6e-14
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
            +A++ + A + +EL F A D+I+++      WW G      G FP+ +V  
Sbjct: 8   CKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTK 59

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
           +A++ + A + +EL F A D+I+++      WW G 
Sbjct: 8  CKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGR 44

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 65.8 bits (161), Expect = 7e-14
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT---RGEASGWFPSAFVRL 193
            + ++D  A   +EL F  G+VI V    D++WW G    + E  G FP +FV +
Sbjct: 13  VKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI 67

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
           + ++D  A   +EL F  G+VI V    D++WW G 
Sbjct: 13 VKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGH 49

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 65.4 bits (160), Expect = 8e-14
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDT 200
             A++ + ++E  +L F  G+ I V    D +WW G+ G+ SG FPS +V+ + S   +
Sbjct: 11  YIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSGPSS 68

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 48.8 bits (117), Expect = 6e-08
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
            A++ + ++E  +L F  G+ I V    D +WW G+
Sbjct: 11 YIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGS 46

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 65.4 bits (160), Expect = 8e-14
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
            +A++D       ELGFR GD+I + + +D +W+ G     SG+FP ++V++
Sbjct: 16  CKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQV 67

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
           +A++D       ELGFR GD+I + + +D +W+ G 
Sbjct: 16 CKALYDFEPENDGELGFREGDLITLTNQIDENWYEGM 52

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 65.4 bits (160), Expect = 9e-14
 Identities = 17/52 (32%), Positives = 29/52 (55%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
             A++D       ELGF+ GD+I + + +D +W+ G     SG+FP  +V +
Sbjct: 10  CRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEI 61

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
            A++D       ELGF+ GD+I + + +D +W+ G 
Sbjct: 10 CRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGM 46

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 64.9 bits (159), Expect = 9e-14
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 196
            EA++ + A + E+L F+ GD+I VL  ++ +W  G      G FP  FV    +
Sbjct: 8   VEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSAT 62

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 51.8 bits (125), Expect = 4e-09
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
           EA++ + A + E+L F+ GD+I VL  ++ +W  G 
Sbjct: 8  VEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGE 44

>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens} Length = 185

 Score = 68.6 bits (167), Expect = 9e-14
 Identities = 13/115 (11%), Positives = 36/115 (31%), Gaps = 12/115 (10%)

Query: 396 PTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVE---------GWEGED 446
             +  +   + ++L  ++DV   ++ +    E   +L     + +         G     
Sbjct: 4   KDNEVEQEDLAQSLSLVKDVIGAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAK 63

Query: 447 LIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLN 501
                 +L+  G V    +      +   L    LV+ +    K   +++ +   
Sbjct: 64  EDLKRKKLVRDGSVFLKNAAGRLKEVQAVLLTDILVFLQE---KDQKYIFASLDQ 115

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 201
           A+A+    A +   L F   D+I VL+    +WW+G      GWFP ++V++    E   
Sbjct: 13  AQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGSESGP 71

Query: 202 ED 203
             
Sbjct: 72  SS 73

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A+A+    A +   L F   D+I VL+    +WW+G 
Sbjct: 13 AQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGE 48

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 65.9 bits (161), Expect = 1e-13
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASG 184
           S SS        D  + A   ++++A   +EL    G  + V++     WW G+     G
Sbjct: 3   SGSSGDPGERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVG 62

Query: 185 WFPSAFVRLRVSQEDTVEDCLAALASGGS 213
           WFPS +V      E+        + SG S
Sbjct: 63  WFPSNYV-----TEEGDSPLGDHVGSGPS 86

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 45.9 bits (109), Expect = 9e-07
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
          A   ++++A   +EL    G  + V++     WW G+  
Sbjct: 20 AYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYN 58

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 64.9 bits (159), Expect = 1e-13
 Identities = 15/52 (28%), Positives = 23/52 (44%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           A A +D+V   A EL F+ G  + +      DWW G      G  P  ++ +
Sbjct: 9   AIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVV 60

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A A +D+V   A EL F+ G  + +      DWW G 
Sbjct: 9  AIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGR 45

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
             A++D+ A   +EL   AGD++EV+   +  WW   R    G+ P +++  
Sbjct: 11  YRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEK 62

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 48.8 bits (117), Expect = 5e-08
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
            A++D+ A   +EL   AGD++EV+   +  WW   R 
Sbjct: 11 YRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERN 49

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 65.5 bits (160), Expect = 1e-13
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-----RGEASGWFPSAFVRL 193
           +A+    +VA  +E+L    G +I +L      WW G      +    GWFP++ V+L
Sbjct: 9   IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL 66

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 8  LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          +A+    +VA  +E+L    G +I +L      WW G 
Sbjct: 9  IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGE 46

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 64.5 bits (158), Expect = 1e-13
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
            +A++D+ A   +EL F+ GD I V       WW G      GW P+ +V+ 
Sbjct: 6   VKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQD 57

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 49.1 bits (118), Expect = 4e-08
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
           +A++D+ A   +EL F+ GD I V       WW G 
Sbjct: 6  VKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGE 42

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 65.6 bits (160), Expect = 1e-13
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 2/76 (2%)

Query: 125 SESSVTSLGMDEDFVVLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA 182
           S  S   L   ++  V A+A+   V  A +   L    GD+++V        W G     
Sbjct: 2   SSGSSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGR 61

Query: 183 SGWFPSAFVRLRVSQE 198
            G FP   V++   Q 
Sbjct: 62  KGLFPFTHVKIFDPQN 77

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 7  VLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          V A+A+   V  A +   L    GD+++V        W G 
Sbjct: 17 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGE 57

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 71.2 bits (173), Expect = 1e-13
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 17/141 (12%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL--RVSQED 199
           AEA++D       EL F+AGDVI +L  +++DW  GT   A+G FP +FV++     +ED
Sbjct: 177 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEED 236

Query: 200 TVEDCLAALASGGSKTLRRRTSIS--------------LLSNDQVRSRVVRELINTERDF 245
              + L       + +  +  ++               L   +  R  +     + E D 
Sbjct: 237 DPTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDL 296

Query: 246 VKVLHDVSEG-YLAECRRRND 265
           V++L D      + + R    
Sbjct: 297 VRLLSDEDVALMVRQARGLPS 317

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 55.4 bits (132), Expect = 2e-08
 Identities = 38/194 (19%), Positives = 58/194 (29%), Gaps = 41/194 (21%)

Query: 9   AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDI 68
           AEA++D       EL F+AGDVI +L  +++DW  GT   A            I P    
Sbjct: 177 AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGA----------TGIFP---- 222

Query: 69  SKSLKRIRPHHALRRSVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESS 128
              +K ++          +             +   +   D       S   LL D    
Sbjct: 223 LSFVKILKD-------FPEEDDPTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLEL 275

Query: 129 VTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT---RGEASGW 185
                  ED               A       GD++ +L   D                 
Sbjct: 276 TRREFQREDI--------------ALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRL 321

Query: 186 FPSAFVRLRVSQED 199
           FP    +L ++Q+D
Sbjct: 322 FPW---KLHITQKD 332

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 20/60 (33%), Positives = 30/60 (50%)

Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
            ++ +A ++      +EL    GD+I V    +  WW GT    +GWFPS +VR   S E
Sbjct: 10  QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSE 69

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 6  VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
           ++ +A ++      +EL    GD+I V    +  WW GT
Sbjct: 10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGT 49

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 12/49 (24%), Positives = 24/49 (48%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
            V  + +   +E+GF  G  +EV+      WW+       GW P+++++
Sbjct: 13  TVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLK 61

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
           V  + +   +E+GF  G  +EV+      WW+    
Sbjct: 13 TVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYL 49

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 65.1 bits (159), Expect = 1e-13
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGEA 182
           S SS      + +  +   A++     +  +L F+AGD I V+   D   DWW G     
Sbjct: 3   SGSSGHERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQ 62

Query: 183 SGWFPSAFVRL 193
           +G FP+ +V +
Sbjct: 63  TGIFPANYVTM 73

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGT 45
            A++     +  +L F+AGD I V+   D   DWW G 
Sbjct: 20 VTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGK 58

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 64.5 bits (158), Expect = 1e-13
 Identities = 18/55 (32%), Positives = 25/55 (45%)

Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           +V A   +D+ A   +EL    G++I  +   D  WW G      G FP  FVR 
Sbjct: 1   MVEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVRE 55

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 48.7 bits (117), Expect = 5e-08
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 6  VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          +V A   +D+ A   +EL    G++I  +   D  WW G 
Sbjct: 1  MVEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQ 40

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 64.6 bits (158), Expect = 1e-13
 Identities = 20/55 (36%), Positives = 28/55 (50%)

Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
            ++  A ++      +EL F  GDVI V    +  WW GT    +GWFPS +VR 
Sbjct: 6   QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 60

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 6  VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
           ++  A ++      +EL F  GDVI V    +  WW GT
Sbjct: 6  QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT 45

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 64.6 bits (158), Expect = 1e-13
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
              ++D       ELGF+ GD+I + + +D +W+ G     SG+FP  +V +
Sbjct: 6   CRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEV 57

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
             ++D       ELGF+ GD+I + + +D +W+ G 
Sbjct: 6  CRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGM 42

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 64.1 bits (157), Expect = 1e-13
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 193
           A A +D+ A E  EL F   D I  ++ +D DWW G   +  + G FPS +V L
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 56

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A A +D+ A E  EL F   D I  ++ +D DWW G 
Sbjct: 3  ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGE 39

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRL 193
              +A++D+ A  ++EL F  G +I  +      WW G        +FPS +V  
Sbjct: 8   RTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVED 62

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 48.4 bits (116), Expect = 7e-08
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 7  VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
             +A++D+ A  ++EL F  G +I  +      WW G 
Sbjct: 8  RTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGD 46

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 137 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLR 194
           D      A++D+ A  ++EL    GD+I V    + DWW+G+  +G+  G+FP+  V   
Sbjct: 4   DTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQ-EGYFPANHVASE 62

Query: 195 VSQED 199
              ++
Sbjct: 63  TLYQE 67

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 51.2 bits (123), Expect = 9e-09
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 4  DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          D      A++D+ A  ++EL    GD+I V    + DWW+G+
Sbjct: 4  DTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGS 45

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 64.2 bits (157), Expect = 2e-13
 Identities = 18/53 (33%), Positives = 29/53 (54%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR 194
           A A++D+ A   +E+ F   D+I  ++ +D  WW G      G FP+ +V LR
Sbjct: 12  AIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR 64

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A A++D+ A   +E+ F   D+I  ++ +D  WW G 
Sbjct: 12 AIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGV 48

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 128 SVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDR----DWWWGTRGEAS 183
           S  S G + +   +  AV+   A    EL   A   +++L+  D     +WW        
Sbjct: 2   SSGSSGSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKK 61

Query: 184 GWFPSAFVR 192
           G+ PS ++R
Sbjct: 62  GYVPSNYIR 70

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 4/38 (10%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDR----DWWWG 44
          AV+   A    EL   A   +++L+  D     +WW  
Sbjct: 18 AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLA 55

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 64.4 bits (157), Expect = 2e-13
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 9/57 (15%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---------GWFPSAFV 191
           A++D+ A  AE+L FRAGD ++VLDT    WW     E           G+ PS +V
Sbjct: 12  ALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYV 68

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          A++D+ A  AE+L FRAGD ++VLDT    WW  
Sbjct: 12 ALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLA 45

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 64.2 bits (157), Expect = 2e-13
 Identities = 15/52 (28%), Positives = 28/52 (53%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
            +  + ++    +EL  + GD+IEV+  ++  WW G     +G FPS F++ 
Sbjct: 10  CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKE 61

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 48.4 bits (116), Expect = 7e-08
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
           +  + ++    +EL  + GD+IEV+  ++  WW G 
Sbjct: 10 CQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGV 46

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 20/51 (39%), Positives = 26/51 (50%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
             A ++      +EL F  GDVI V    +  WW GT    +GWFPS +VR
Sbjct: 7   VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVR 57

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 48.8 bits (117), Expect = 4e-08
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
            A ++      +EL F  GDVI V    +  WW GT
Sbjct: 7  VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGT 43

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 64.2 bits (157), Expect = 2e-13
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 193
           A A ++       E+ FR G+ I +L  +D +W+ G        G FP  +V +
Sbjct: 10  AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDV 63

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A A ++       E+ FR G+ I +L  +D +W+ G 
Sbjct: 10 AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGR 46

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 15/52 (28%), Positives = 27/52 (51%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           A A +D  A   +EL  + GD++ +   +D++W+ G      G FP  ++ L
Sbjct: 10  ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIEL 61

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 49.1 bits (118), Expect = 4e-08
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A A +D  A   +EL  + GD++ +   +D++W+ G 
Sbjct: 10 ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGE 46

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 63.5 bits (155), Expect = 3e-13
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 140 VLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ 197
           + A  +   V  A +   L    G++++V        W G      G FP   VRL + Q
Sbjct: 7   IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRL-LDQ 65

Query: 198 ED 199
           ++
Sbjct: 66  QN 67

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 7  VLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          + A  +   V  A +   L    G++++V        W G 
Sbjct: 7  IYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGE 47

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVSQE 198
           A++D+ A   ++L F  G+  ++L++ + DWW         +G+ PS ++      +
Sbjct: 10  ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRLD 66

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 52.0 bits (125), Expect = 6e-09
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A++D+ A   ++L F  G+  ++L++ + DWW   
Sbjct: 10 ALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEAR 44

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 63.5 bits (155), Expect = 4e-13
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 140 VLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ 197
           V A+A+   V  A +   L    GD+++V        W G      G FP   V++   Q
Sbjct: 2   VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ 61

Query: 198 EDTVED 203
                +
Sbjct: 62  NPDENE 67

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 7  VLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          V A+A+   V  A +   L    GD+++V        W G 
Sbjct: 2  VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGE 42

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 63.5 bits (155), Expect = 4e-13
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVS 196
           F    +A++D+ A   +EL F    +I+ ++  +  WW G   G+   WFPS +V   V+
Sbjct: 5   FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVN 64

Query: 197 QEDTVED 203
            E    D
Sbjct: 65  PEGIHRD 71

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 48.4 bits (116), Expect = 8e-08
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 5  FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          F    +A++D+ A   +EL F    +I+ ++  +  WW G 
Sbjct: 5  FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGD 45

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 63.6 bits (155), Expect = 5e-13
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT---RGE 181
           S SS             A A +        EL FR G+ I ++  ++ +W+ G     G 
Sbjct: 3   SGSSGKPPTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGR 62

Query: 182 ASGWFPSAFVRLRVSQEDTVEDCLAALASGG 212
             G FP+++V  +VS+E  +  C  +  S G
Sbjct: 63  -QGIFPASYV--QVSREPRLRLCDDSGPSSG 90

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 51.3 bits (123), Expect = 1e-08
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A A +        EL FR G+ I ++  ++ +W+ G 
Sbjct: 20 AVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGR 56

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 62.6 bits (153), Expect = 6e-13
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           A+A+ ++      +L F  GDVI +   LD +W+ G     SG FP++ V +
Sbjct: 10  AKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEV 61

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A+A+ ++      +L F  GDVI +   LD +W+ G 
Sbjct: 10 AKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGE 46

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 63.2 bits (154), Expect = 7e-13
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA---SGWFPSAFVRL 193
           A A+ D+   +   L F+  D+I +      + W+   G+     G FP   V +
Sbjct: 13  ARALKDYNVSDTSLLPFKRNDIITITFKDQENKWF--MGQLNGKEGSFPVDHVEI 65

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
          A A+ D+   +   L F+  D+I +      + W+   G+
Sbjct: 13 ARALKDYNVSDTSLLPFKRNDIITITFKDQENKWF--MGQ 50

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 62.7 bits (153), Expect = 7e-13
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 193
           A A ++       E+ FR G+ I +L  +D +W+ G        G FP  +V +
Sbjct: 9   AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDV 62

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A A ++       E+ FR G+ I +L  +D +W+ G 
Sbjct: 9  AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGR 45

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 62.7 bits (153), Expect = 7e-13
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 5/56 (8%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-----RGEASGWFPSAFVRLR 194
           A + + +   ++L F     I V    D +W++G           G FP +FV ++
Sbjct: 12  AQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ 67

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A + + +   ++L F     I V    D +W++G 
Sbjct: 12 AQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGE 46

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 62.8 bits (153), Expect = 9e-13
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRG 180
           + +   +   G ++  VV   A++D+ A+  E+L F+ GD + VL+    +WW       
Sbjct: 12  NSNTPGIREAGSEDIIVV---ALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLAT 67

Query: 181 EASGWFPSAFVRLRVSQE 198
              G+ PS +V    S E
Sbjct: 68  RKEGYIPSNYVARVDSLE 85

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 2  DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          ++  VV   A++D+ A+  E+L F+ GD + VL+    +WW  
Sbjct: 24 EDIIVV---ALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKA 62

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 62.2 bits (152), Expect = 9e-13
 Identities = 14/52 (26%), Positives = 26/52 (50%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           A   +D  A   +EL  + GD++ +   +D++W  G      G FP+ +V +
Sbjct: 4   ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEV 55

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 48.7 bits (117), Expect = 5e-08
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A   +D  A   +EL  + GD++ +   +D++W  G 
Sbjct: 4  ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGE 40

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 62.7 bits (153), Expect = 9e-13
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RG 180
           S + +  T  G      V   A++D+ A+  ++L F  G+  ++L++ + DWW       
Sbjct: 2   SMTGTLRTRGGTGVTLFV---ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTT 58

Query: 181 EASGWFPSAFV 191
             +G+ PS +V
Sbjct: 59  GETGYIPSNYV 69

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 10/35 (28%), Positives = 22/35 (62%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A++D+ A+  ++L F  G+  ++L++ + DWW   
Sbjct: 20 ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEAR 54

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 66.2 bits (161), Expect = 9e-13
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDT 200
             A+ D+      E+    GDV+EV++  +  WW+       GW P++F+    S ++T
Sbjct: 14  YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDET 72

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 66.2 bits (161), Expect = 9e-13
 Identities = 20/95 (21%), Positives = 41/95 (43%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTV 201
             A+  + A+E +E+    G+ +EV+  L   WW   + + +G+FPS +++         
Sbjct: 84  YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQA 143

Query: 202 EDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVR 236
           +  +   A     ++R   SI   S  ++     R
Sbjct: 144 QRQIKRGAPPRRSSIRNAHSIHQRSRKRLSQDAYR 178

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
            A+ D+      E+    GDV+EV++  +  WW+     
Sbjct: 14 YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKA 53

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 9   AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
             A+  + A+E +E+    G+ +EV+  L   WW   + +
Sbjct: 84  YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDD 123

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 62.9 bits (153), Expect = 1e-12
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD--WWWG--TRG 180
           S SS  S G     + + + ++   ++  EEL F  G+ +EV++  + D  WW     RG
Sbjct: 3   SGSSGLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARG 62

Query: 181 EASGWFPSAFVRLRVSQE 198
           +  G  P  +V +     
Sbjct: 63  Q-VGLVPKNYVVVLSDGP 79

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 49.0 bits (117), Expect = 8e-08
 Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 3  EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD--WWWG 44
             + + + ++   ++  EEL F  G+ +EV++  + D  WW  
Sbjct: 14 SRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKC 57

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 62.3 bits (152), Expect = 1e-12
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDT 200
           A A +D  A   +EL F+ GD+++VL +  D++W+        G+ P  ++ ++   E  
Sbjct: 12  AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPEFI 71

Query: 201 VED 203
           V D
Sbjct: 72  VTD 74

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 46.1 bits (110), Expect = 5e-07
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGT 45
          A A +D  A   +EL F+ GD+++VL +  D++W+   
Sbjct: 12 AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAE 49

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGEASGWFPSAFVRL 193
           A A++     E+ +L FR GDVI +L   D   DWW G      G FP+ +V L
Sbjct: 6   AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL 59

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 48.7 bits (117), Expect = 5e-08
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGT 45
          A A++     E+ +L FR GDVI +L   D   DWW G 
Sbjct: 6  AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGR 44

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 142 AEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDRD-WWWGT--RGEASGWFPSAFVRL 193
            + ++ H A   +  L F  GDVI +L   ++D W +G     +A GWFPS++ +L
Sbjct: 9   VKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKL 64

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 9  AEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDRD-WWWGT 45
           + ++ H A   +  L F  GDVI +L   ++D W +G 
Sbjct: 9  VKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGE 47

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 61.5 bits (150), Expect = 1e-12
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 193
             A++D+ A + +E+ FR GD I  +  +D  W +GT  R   +G  P+ ++  
Sbjct: 9   YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF 62

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 50.7 bits (122), Expect = 9e-09
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
            A++D+ A + +E+ FR GD I  +  +D  W +GT
Sbjct: 9  YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGT 45

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLD--TLDRDWWWGTRGEASGWFPSAFVRL 193
           A  ++D+ A  + EL   A +VI V     +D DW  G RG   G  P  ++ L
Sbjct: 20  ARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLEL 73

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLD--TLDRDWWWGTRG 47
          A  ++D+ A  + EL   A +VI V     +D DW  G RG
Sbjct: 20 ARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERG 60

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVRLRVSQE 198
           A++D+ A    +L F  G+  ++L+    DWW         +G+ PS +V    S +
Sbjct: 11  ALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSIQ 67

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A++D+ A    +L F  G+  ++L+    DWW   
Sbjct: 11 ALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEAR 45

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 61.5 bits (150), Expect = 2e-12
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 144 AVWDHVAM-EAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVR 192
           A+  +  + + +E+ F  GD+  V + L+  W W T  R +  G      V 
Sbjct: 12  AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 63

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 11 AVWDHVAM-EAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A+  +  + + +E+ F  GD+  V + L+  W W T
Sbjct: 12 AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVT 47

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 61.5 bits (150), Expect = 2e-12
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVR 192
           A+  + A   EEL  + G+ I VL      W  G       +G FPS +V 
Sbjct: 12  ALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVI 62

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A+  + A   EEL  + G+ I VL      W  G 
Sbjct: 12 ALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGL 46

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 61.0 bits (149), Expect = 2e-12
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA---SGWFPSAFVR 192
           EA++ + A   +E+    GD+I V+   D   W    GE     G FP+++ +
Sbjct: 4   EAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWT--YGECDGLKGLFPTSYCK 54

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 49.1 bits (118), Expect = 3e-08
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 10 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
          EA++ + A   +E+    GD+I V+   D   W    GE
Sbjct: 4  EAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWT--YGE 40

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 6/70 (8%)

Query: 135 DEDFVVLAEAVWDHVAMEAE--ELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAF 190
           D++F+  A+A++ + A + +  E+ F   ++++V D  +  WW      GE +G  PS +
Sbjct: 1   DDNFIYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGE-TGIIPSNY 58

Query: 191 VRLRVSQEDT 200
           V+L    E+ 
Sbjct: 59  VQLIDGPEEM 68

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 2  DEDFVVLAEAVWDHVAMEAE--ELGFRAGDVIEVLDTLDRDWWWGTR 46
          D++F+  A+A++ + A + +  E+ F   ++++V D  +  WW   R
Sbjct: 1  DDNFIYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARR 46

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 61.1 bits (149), Expect = 2e-12
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVR 192
            +A++D+ A   +EL F    +I+ ++  D  WW G   G+   WFPS +V 
Sbjct: 6   VKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVE 57

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 48.8 bits (117), Expect = 5e-08
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
           +A++D+ A   +EL F    +I+ ++  D  WW G 
Sbjct: 6  VKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGD 42

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 8/59 (13%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW--------GTRGEASGWFPSAFV 191
           L  A++D+      E+  + GD++ +L++ ++DWW         G   E  G+ P+A+V
Sbjct: 3   LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 10/37 (27%), Positives = 22/37 (59%)

Query: 8  LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          L  A++D+      E+  + GD++ +L++ ++DWW  
Sbjct: 3  LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV 39

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 61.1 bits (149), Expect = 2e-12
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 135 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAFV 191
           D +  V   A++D VA     L    G+ + VL       W         GW PSA++
Sbjct: 4   DPNLFV---ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYI 58

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 48.3 bits (116), Expect = 6e-08
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 2  DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
          D +  V   A++D VA     L    G+ + VL       W   +
Sbjct: 4  DPNLFV---ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQ 45

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 62.5 bits (152), Expect = 2e-12
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA-- 182
           S S  T L       V   A++D+ A   E+L F+ G+  ++++  + DWW         
Sbjct: 16  SSSYPTGLTGGVTIFV---ALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGK 72

Query: 183 SGWFPSAFVRLRVSQE 198
           SG+ PS +V    S +
Sbjct: 73  SGYIPSNYVVPADSIQ 88

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 51.3 bits (123), Expect = 2e-08
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
          A++D+ A   E+L F+ G+  ++++  + DWW    
Sbjct: 32 ALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARS 67

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 60.6 bits (148), Expect = 3e-12
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFV 191
             A++D    + E+L F+ GD++ + D  +  WW    + G+  G  P  +V
Sbjct: 4   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGK-RGMIPVPYV 54

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 51.0 bits (123), Expect = 8e-09
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
            A++D    + E+L F+ GD++ + D  +  WW  
Sbjct: 4  VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNA 39

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 60.7 bits (148), Expect = 3e-12
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAFVRL 193
           +V     +D+ A+  +EL  R G++I  +  L  + W  G      G FP  FV+ 
Sbjct: 1   MVDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKE 56

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 6  VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
          +V     +D+ A+  +EL  R G++I  +  L  + W    GE
Sbjct: 1  MVDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWL--EGE 41

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 60.7 bits (148), Expect = 3e-12
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLD-TLDRDWWWG--TRGEASGWFPSAFVRLR 194
             A ++      ++L F  GDV+ ++  T D +W+      G   G  P+ +V+ R
Sbjct: 14  CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGR-EGIIPANYVQKR 68

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 7/38 (18%), Positives = 16/38 (42%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
            A ++      ++L F  GDV+ ++       W+  +
Sbjct: 14 CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAK 51

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 60.7 bits (148), Expect = 4e-12
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRLRVSQED 199
            + ++ + A   +EL  + GD++ ++  D +D  WW G      G FP  FV+L    E 
Sbjct: 5   CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPLEH 64

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGT 45
           + ++ + A   +EL  + GD++ ++  D +D  WW G 
Sbjct: 5  CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE 43

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 60.4 bits (147), Expect = 4e-12
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRL 193
            + ++ + A   +EL  + GD++ ++  D +D  WW G      G FP  FV+L
Sbjct: 10  CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKL 63

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGT 45
           + ++ + A   +EL  + GD++ ++  D +D  WW G 
Sbjct: 10 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE 48

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 60.9 bits (148), Expect = 4e-12
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFVRLR 194
                +H   +  EL FR GDV+ +L+  +   W+  +   S   G   +  +R R
Sbjct: 20  CITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRER 75

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA 49
               +H   +  EL FR GDV+ +L+  +   W+  +   
Sbjct: 20 CITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHT 60

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 60.3 bits (147), Expect = 4e-12
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRL 193
              ++ +     +EL FR G++I ++  +T +  WW G      G FP  F   
Sbjct: 9   CRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQ 62

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 45.7 bits (109), Expect = 6e-07
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGT 45
             ++ +     +EL FR G++I ++  +T +  WW G 
Sbjct: 9  CRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGE 47

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 60.5 bits (147), Expect = 5e-12
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW------GTRGEASGWFPSAFV 191
            +WD  +   EEL FRAGDV  V    +  WWW           A G+ P  ++
Sbjct: 15  GLWDFKSRTDEELSFRAGDVFHVARKEE-QWWWATLLDEAGGAVAQGYVPHNYL 67

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 17/45 (37%), Positives = 23/45 (51%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQ 55
           +WD  +   EEL FRAGDV  V    ++ WW     EA   ++Q
Sbjct: 15 GLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQ 59

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 60.3 bits (147), Expect = 5e-12
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG-TRGEASGWFPSAFV 191
           M    +    A++D++ M A +L  R GD   +L+  +  WW    +    G+ PS +V
Sbjct: 3   MSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 61

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 1  MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          M    +    A++D++ M A +L  R GD   +L+  +  WW  
Sbjct: 3  MSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRA 46

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 59.9 bits (146), Expect = 6e-12
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFV 191
             A++D    + E+L F+ GD++ + D  +  WW    + G+  G  P  +V
Sbjct: 6   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGK-RGMIPVPYV 56

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
            A++D    + E+L F+ GD++ + D  +  WW  
Sbjct: 6  VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNA 41

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 59.9 bits (146), Expect = 6e-12
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW-GT--RGEASGWFPSAFVRL 193
             A++D+   E +EL F+AGD +  L   D   W  G    G+  G +P+ +V  
Sbjct: 6   VRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQ-LGLYPANYVEA 59

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
            A++D+   E +EL F+AGD +  L   D   W   RG 
Sbjct: 6  VRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWC--RGR 43

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 60.5 bits (147), Expect = 6e-12
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFV 191
           L  A++D+   + +EL  R  +   +LD+ +  WW      G   G+ PS+++
Sbjct: 22  LVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGH-EGYAPSSYL 73

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 8  LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          L  A++D+   + +EL  R  +   +LD+ +  WW  
Sbjct: 22 LVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRV 58

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 60.5 bits (147), Expect = 6e-12
 Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG-TRGE 181
           S S        + E    +  A++D+   + +EL  R  +   +LD+ +  WW    R  
Sbjct: 3   SGSSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNG 62

Query: 182 ASGWFPSAFVRLRVSQEDTVED 203
             G+ PS+++  +        +
Sbjct: 63  HEGYVPSSYLVEKSPNNLETYE 84

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 2  DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          +E  V+   A++D+   + +EL  R  +   +LD+ +  WW  
Sbjct: 18 EETVVI---ALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRV 57

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 60.0 bits (146), Expect = 6e-12
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 193
           A A++D       EL    GD++ +     + W       G  +G  P  FV  
Sbjct: 8   AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSY 61

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A A++D       EL    GD++ +     + W    
Sbjct: 8  AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAE 44

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 60.0 bits (146), Expect = 6e-12
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTRGEASGWFPSAFVRL 193
           +LA A++D+    ++EL F  GD++ +L+    +   WW        G  P+  +++
Sbjct: 8   LLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQI 64

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 7  VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGT 45
          +LA A++D+    ++EL F  GD++ +L+    +   WW   
Sbjct: 8  LLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCL 49

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 60.0 bits (146), Expect = 8e-12
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRLRVSQED 199
            + ++ + A   +EL  + GD++ ++  D +D  WW G      G FP  FV+L     +
Sbjct: 12  CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPDFE 71

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGT 45
           + ++ + A   +EL  + GD++ ++  D +D  WW G 
Sbjct: 12 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGE 50

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 59.2 bits (144), Expect = 8e-12
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 141 LAEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVR 192
           + EA +D     +  EL  + GDVI +       W  G    G   GW P+A+++
Sbjct: 2   MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK 56

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 8  LAEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDRDWWWGTR 46
          + EA +D     +  EL  + GDVI +       W  G  
Sbjct: 2  MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKL 41

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-ASGWFPSAFV 191
           AV D  A +  +L F+ G+++ V++     WW     +   G  P  ++
Sbjct: 15  AVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYL 63

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 48.4 bits (116), Expect = 7e-08
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          AV D  A +  +L F+ G+++ V++     WW  
Sbjct: 15 AVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIA 48

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 60.2 bits (146), Expect = 1e-11
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRLRVS 196
                A++   A   +E+ F +GD+I+V      +  W +G+     GWFP  +V    S
Sbjct: 5   SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPS 64

Query: 197 QED 199
            E+
Sbjct: 65  SEN 67

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 44.0 bits (104), Expect = 6e-06
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 6  VVLAEAVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGT 45
               A++   A   +E+ F +GD+I+V      +  W +G+
Sbjct: 5  SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGS 46

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 142 AEAVWDHVAME-AEELGFRAGDVIEVLDTLDRD-WWWGT--RGEASGWFPSAFVRL 193
            + ++ H A      L F  GDV+ +L   ++D W +G     +A GWFPS++ +L
Sbjct: 10  VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKL 65

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 43.1 bits (102), Expect = 6e-06
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 9  AEAVWDHVAME-AEELGFRAGDVIEVLDTLDRD-WWWGTR 46
           + ++ H A      L F  GDV+ +L   ++D W +G  
Sbjct: 10 VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEH 49

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 59.2 bits (144), Expect = 1e-11
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 136 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVRL 193
            + VV   A++D  A EA +L    G    +L+  D  WW      G   G+ PS +V  
Sbjct: 2   SEIVV---AMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGS-EGYIPSNYVTG 57

Query: 194 RVSQE 198
           + S  
Sbjct: 58  KKSNN 62

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 3  EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
           + VV   A++D  A EA +L    G    +L+  D  WW  
Sbjct: 2  SEIVV---AMYDFQATEAHDLRLERGQEYIILEKNDLHWWRA 40

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 59.0 bits (143), Expect = 1e-11
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 8/69 (11%)

Query: 128 SVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW----GTRGEAS 183
           S  S G  +D  V   ++ D+   E E  GF+ G  +EVL+     WW+           
Sbjct: 2   SSGSSGNLKDVYV---SIADYEGDE-ETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFK 57

Query: 184 GWFPSAFVR 192
           GW PS ++ 
Sbjct: 58  GWVPSNYLE 66

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          ++ D+   E E  GF+ G  +EVL+     WW+ 
Sbjct: 15 SIADYEGDE-ETAGFQEGVSMEVLERNPNGWWYC 47

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 58.3 bits (142), Expect = 2e-11
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 193
           A A++D       EL    GD++ +     + W       G  +G  P  FV  
Sbjct: 4   AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSY 57

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A A++D       EL    GD++ +     + W    
Sbjct: 4  AVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAE 40

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVSQEDTV 201
           A++  V    +EL     D + V    +  W+     R  A G FP+ +      + + +
Sbjct: 11  AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKEPEHM 70

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 7/36 (19%), Positives = 13/36 (36%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
          A++  V    +EL     D + V    +  W+    
Sbjct: 11 AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYN 46

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTRGE--ASGWFPSAFVRLRVSQE 198
               +D +A   +EL  ++GD + +L D   +DWW     +   SG  P+ F+     ++
Sbjct: 9   GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDKK 68

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTR 46
              +D +A   +EL  ++GD + +L D   +DWW    
Sbjct: 9  GIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQL 47

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 60.1 bits (145), Expect = 2e-11
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 15/85 (17%)

Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVL-----DTLDRDWWWG 177
            +  ++   L +   F+   +A  D+ A + +EL  +AGDV+ V+     +  D  W  G
Sbjct: 28  VEGSTTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMG 87

Query: 178 TRGEA----------SGWFPSAFVR 192
            +              G FP  F  
Sbjct: 88  VKESDWNQHKELEKCRGVFPENFTE 112

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 47.0 bits (111), Expect = 8e-07
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 1  MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVL-----DTLDRDWWWGTRGEAFEHLSQ 55
          +   F+   +A  D+ A + +EL  +AGDV+ V+     +  D  W  G +   +    +
Sbjct: 39 LPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKE 98

Query: 56 I 56
          +
Sbjct: 99 L 99

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFV 191
           A++ +     +EL  R GD ++V+   D  W+ G   R +  G FP  +V
Sbjct: 12  AMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYV 61

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A++ +     +EL  R GD ++V+   D  W+ G 
Sbjct: 12 AMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGV 46

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 58.6 bits (142), Expect = 2e-11
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 138 FVVLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV 195
           F   A    D      + + L  + GD+I+++       W G      G F   +V +  
Sbjct: 8   FCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLS 67

Query: 196 SQEDT 200
           S   +
Sbjct: 68  SGPSS 72

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 5  FVVLAEAVWDHV--AMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          F   A    D      + + L  + GD+I+++       W G 
Sbjct: 8  FCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGL 50

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLD--TLDRDWWWGTRGEASGWFPSAFVR 192
           A A ++  A +  EL  R GDV+ +      D+ WW G      GWFPS +V 
Sbjct: 10  AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 43.1 bits (102), Expect = 7e-06
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLD--TLDRDWWWGT 45
          A A ++  A +  EL  R GDV+ +      D+ WW G 
Sbjct: 10 AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGE 48

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 58.1 bits (141), Expect = 3e-11
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 142 AEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDRDWWW-GT--RGEASGWFPSAFVRL 193
            +A++ H A +    L F+ GD+I +L    RD W  G   + +  GWFP ++ R+
Sbjct: 10  VKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV 65

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 9  AEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDRDWWW 43
           +A++ H A +    L F+ GD+I +L    RD W 
Sbjct: 10 VKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWH 45

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 128 SVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW---GTRGEASG 184
           S  S G   ++ +  + V+ + A + +EL     +V+EV++  D + W       G+  G
Sbjct: 2   SSGSSGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQ-VG 60

Query: 185 WFPSAFVRLRVSQE 198
           + P  +++   S  
Sbjct: 61  YVPEKYLQFPTSSG 74

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 9/42 (21%), Positives = 22/42 (52%)

Query: 2  DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW 43
            ++ +  + V+ + A + +EL     +V+EV++  D + W 
Sbjct: 9  LRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWV 50

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 58.0 bits (141), Expect = 3e-11
 Identities = 13/51 (25%), Positives = 24/51 (47%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
             + ++D  A  A EL     +V+EVL+   + W   +R   +G+ P   +
Sbjct: 9   YVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNIL 59

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 47.6 bits (114), Expect = 2e-07
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 8  LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
            + ++D  A  A EL     +V+EVL+   R WW  
Sbjct: 9  YVKILYDFTARNANELSVLKDEVLEVLED-GRQWWKL 44

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 58.6 bits (142), Expect = 3e-11
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 6/60 (10%)

Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFV 191
           M++  VV   A++D+V+   ++L F+ GD + VL+    +WW          G+ PS +V
Sbjct: 1   MEDIIVV---ALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYV 56

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 4/44 (9%)

Query: 1  MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          M++  VV   A++D+V+   ++L F+ GD + VL+    +WW  
Sbjct: 1  MEDIIVV---ALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKA 40

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 58.2 bits (141), Expect = 4e-11
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA 182
             S       G+D DF+     + D+ + +     FR G+ + V+   +  WW       
Sbjct: 4   GSSGPLPNPEGLDSDFLA---VLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLST 59

Query: 183 --SGWFPSAFV 191
               + P   V
Sbjct: 60  GRESYIPGICV 70

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 4/43 (9%)

Query: 2  DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          D DF+     + D+ + +     FR G+ + V+   +  WW  
Sbjct: 16 DSDFLA---VLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKA 54

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 57.7 bits (140), Expect = 4e-11
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 142 AEAVWDHVA-MEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFV 191
            EA +D      + EL  + GD++ +       W       G   GW P+A++
Sbjct: 5   FEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYM 57

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 43.1 bits (102), Expect = 6e-06
 Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)

Query: 9  AEAVWDHVA-MEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
           EA +D      + EL  + GD++ +       W     
Sbjct: 5  FEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKL 43

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 57.7 bits (140), Expect = 5e-11
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 5/56 (8%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD--WWWG--TRGEASGWFPSAFVRL 193
            + ++   ++  EEL F  G+ +EV++  + D  WW     RG+  G  P  +V +
Sbjct: 9   VQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQ-VGLVPKNYVVV 63

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD--WWWG 44
           + ++   ++  EEL F  G+ +EV++  + D  WW  
Sbjct: 9  VQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKC 46

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 57.2 bits (139), Expect = 5e-11
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVR 192
           A++  V    +EL     D + V    +  W+     R  A G FP+ +  
Sbjct: 8   AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAI 58

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 7/36 (19%), Positives = 13/36 (36%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
          A++  V    +EL     D + V    +  W+    
Sbjct: 8  AIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYN 43

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 58.3 bits (141), Expect = 6e-11
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 13/78 (16%)

Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEA--------EELGFRAGDVIEVLDTLDRDWWW 176
           S SS T  G +E    +  A++D+  +          EEL F+ G +I+V    D D ++
Sbjct: 3   SGSSGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFY 62

Query: 177 GTRGEA---SGWFPSAFV 191
             RGE     G  P   V
Sbjct: 63  --RGETCARLGLIPCNMV 78

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 47.2 bits (112), Expect = 4e-07
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
             +  +     EEL F+ G +I+V    D D ++  RGE
Sbjct: 28 PLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFY--RGE 65

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 57.3 bits (139), Expect = 6e-11
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTRGEASGWFPSAFVRL 193
           V   +A++D+     +EL F  G +I +L+  ++D   +W G      G FPS  V  
Sbjct: 8   VCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEE 65

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 6  VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGT 45
          V   +A++D+     +EL F  G +I +L+  ++D   +W G 
Sbjct: 8  VCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGE 50

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 56.9 bits (138), Expect = 7e-11
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFV 191
                +D  A  + EL  +  DV+EVLD   R WW      G+  G+ P   +
Sbjct: 10  WVLCNYDFQARNSSELSVKQRDVLEVLDD-SRKWWKVRDPAGQ-EGYVPYNIL 60

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 8  LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
               +D  A  + EL  +  DV+EVLD   R WW  
Sbjct: 10 WVLCNYDFQARNSSELSVKQRDVLEVLDD-SRKWWKV 45

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 57.4 bits (139), Expect = 7e-11
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 142 AEAVWDHVAMEA-------EELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAFV 191
             A++D+   E+        EL F  GD+I V   +D D ++ G      G  PS F+
Sbjct: 10  MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFL 67

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 9/47 (19%)

Query: 9  AEAVWDHVAMEA-------EELGFRAGDVIEVLDTLDRDWWWGTRGE 48
            A++D+   E+        EL F  GD+I V   +D D ++   GE
Sbjct: 10 MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFY--YGE 54

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 56.4 bits (137), Expect = 8e-11
 Identities = 9/55 (16%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA---SGWFPSAFVRL 193
            + ++ +V  + +E+    GD I ++       W     +    +G  P+ ++R+
Sbjct: 4   NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 58

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 46.0 bits (110), Expect = 4e-07
 Identities = 6/41 (14%), Positives = 16/41 (39%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA 49
           + ++ +V  + +E+    GD I ++       W     + 
Sbjct: 4  NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDT 44

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 56.7 bits (137), Expect = 1e-10
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 144 AVWDHVAM-EAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVR 192
           A+  +  + + +E+ F  GD+  V + L+  W W T  R +  G      V 
Sbjct: 10  AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVE 61

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 45.5 bits (108), Expect = 7e-07
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 11 AVWDHVAM-EAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A+  +  + + +E+ F  GD+  V + L+  W W T
Sbjct: 10 AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVT 45

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 59.8 bits (144), Expect = 1e-10
 Identities = 27/172 (15%), Positives = 62/172 (36%), Gaps = 16/172 (9%)

Query: 34  LDTLDR-DWWWG--TRGEAFEHLSQI-------IINHSISPNCDISKSLKRIRPHHALRR 83
            D  +   +++   +R EA + L +        ++  S  P  + S +++     +A+  
Sbjct: 6   FDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDSSRPG-EYSLTVREADEGNAVCH 64

Query: 84  SVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAE 143
            + +     E         I  +      +L       +    S + +       VV+  
Sbjct: 65  YLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGT 124

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVRL 193
             +        +L F  G+ +E+L   ++DWW      G  +G  P+ +V++
Sbjct: 125 --FKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGT-TGLVPANYVQI 173

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 8/36 (22%), Positives = 15/36 (41%)

Query: 9   AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
               +        +L F  G+ +E+L   ++DWW  
Sbjct: 121 VVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEA 156

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 56.0 bits (136), Expect = 1e-10
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTRGE--ASGWFPSAFVRL 193
           +      +D +A   +EL  ++GD + +L D   +DWW     +   SG  P+ F+  
Sbjct: 2   MERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 46.0 bits (110), Expect = 4e-07
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 6  VVLAEAVWDHVAMEAEELGFRAGDVIEVL-DTLDRDWWWGTR 46
          +      +D +A   +EL  ++GD + +L D   +DWW    
Sbjct: 2  MERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQL 43

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 58.5 bits (141), Expect = 1e-10
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 1/102 (0%)

Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLD-TLDRDWWWGTRGEASGWFPSAFVRLRVSQ 197
              A+A +D  A +  EL  + GD+I++L+    + WW G      GWFPS +V    S+
Sbjct: 5   FGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSE 64

Query: 198 EDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELI 239
                   +  +      L  +T     + + V +    ++ 
Sbjct: 65  YLPETGGGSGSSMTYKLILNGKTLKGETTTEAVDAATAEKVF 106

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 6  VVLAEAVWDHVAMEAEELGFRAGDVIEVLD-TLDRDWWWGT 45
             A+A +D  A +  EL  + GD+I++L+    + WW G 
Sbjct: 5  FGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGE 45

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA--SGWFPSAFV 191
           + ++ V+   A+  +      +LGF  G+ + +L+    +WW          G+ P  FV
Sbjct: 4   LQDNLVI---ALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFV 59

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 1  MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          + ++ V+   A+  +      +LGF  G+ + +L+    +WW  
Sbjct: 4  LQDNLVI---ALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKA 43

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 56.0 bits (135), Expect = 1e-10
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
           + A   + +VA   +EL    G  + V++     WW G+     GWFPS +V 
Sbjct: 2   IPAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVL 54

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 7  VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
          + A   + +VA   +EL    G  + V++     WW G+  
Sbjct: 2  IPAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYN 42

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 14/57 (24%), Positives = 22/57 (38%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE 198
            + +++  A    EL    G+ +EVLD   R W        SG+ PS  +       
Sbjct: 10  MQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPLSGPS 66

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
           + +++  A    EL    G+ +EVLD   + WW  
Sbjct: 10 MQVLYEFEARNPRELTVVQGEKLEVLDH-SKRWWLV 44

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 55.3 bits (134), Expect = 3e-10
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIE-VLDTLDRDWWWGTRGEASGWFPSAFVRL 193
              A+A++   A    EL F AG V + V  + +  W  GT    +G  P  +V  
Sbjct: 10  FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEF 65

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 6  VVLAEAVWDHVAMEAEELGFRAGDVIE-VLDTLDRDWWWGT 45
             A+A++   A    EL F AG V + V  + +  W  GT
Sbjct: 10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGT 50

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 56.6 bits (136), Expect = 3e-10
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 102 PIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAG 161
           P   +     +    S       S  S  S G   D      A+++     A +L  + G
Sbjct: 22  PPIPKEPSNYDFSGPSSGIEGRGSSGSSGSSGSSGDKERHGVAIYNFQGSGAPQLSLQIG 81

Query: 162 DVIEVLDTLDRDWWWGTRGEAS---GWFPSAFVRLR 194
           DV+ + +T   DW+ G   +     G FP +F+ ++
Sbjct: 82  DVVRIQET-CGDWYRGYLIKHKMLQGIFPKSFIHIK 116

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 42.0 bits (98), Expect = 6e-05
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 9   AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA 49
             A+++     A +L  + GDV+ + +T   DW+ G   + 
Sbjct: 62  GVAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKH 101

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 56.5 bits (136), Expect = 4e-10
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG---TRGEASGWFPSAFVRLR 194
           + A  +++  A   +EL    G+ + +    D +W+      R    G  P ++VR+ 
Sbjct: 4   LFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRII 61

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 7/38 (18%), Positives = 17/38 (44%)

Query: 7  VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          + A  +++  A   +EL    G+ + +    D +W+  
Sbjct: 4  LFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIA 41

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 55.2 bits (133), Expect = 5e-10
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 8/58 (13%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLD-----TLDRDWWWGT--RGEASGWFPSAFV 191
           +  AV+D+ A   EEL  R GD ++VL      + D  WW G    G   G FPS +V
Sbjct: 31  VWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGR-VGVFPSNYV 87

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 8  LAEAVWDHVAMEAEELGFRAGDVIEVLD-----TLDRDWWWGT 45
          +  AV+D+ A   EEL  R GD ++VL      + D  WW G 
Sbjct: 31 VWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQ 73

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 55.9 bits (135), Expect = 5e-10
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT---RGEASGWFPSAFVRLRV--S 196
           A  ++D  A +A+EL    G+ + +    + +W+      R    G  P  FV +    +
Sbjct: 8   AIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIAT 67

Query: 197 QEDTVEDCLAALASGG 212
              T  D +  + S  
Sbjct: 68  GYATGNDVIEDIKSVN 83

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          A  ++D  A +A+EL    G+ + +    + +W+  
Sbjct: 8  AIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIA 43

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 55.1 bits (133), Expect = 5e-10
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR---GEASGWFPSAFVR 192
            E      A +A+E+  +  DV+ VL   D  W +G R   GE +GWFP  F R
Sbjct: 20  VEITKAFFAKQADEVTLQQADVVLVLQQED-GWLYGERLRDGE-TGWFPEDFAR 71

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
           E      A +A+E+  +  DV+ VL   D  W +G R
Sbjct: 20 VEITKAFFAKQADEVTLQQADVVLVLQQED-GWLYGER 56

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 132

 Score = 56.1 bits (135), Expect = 7e-10
 Identities = 12/80 (15%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 436 QQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHV 495
            + ++ WEG+D+    + +     V++  +          LF   L+       + +  +
Sbjct: 11  SEPIQAWEGDDIKTLGNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSAS-PRMSGFM 69

Query: 496 YKARLNIDTSQIINLPDGKG 515
           Y+ ++ I    +  L + +G
Sbjct: 70  YQGKIPIAGMVVNRLDEIEG 89

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 154 EELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAFV 191
             L  RAGDV+ V   +D   ++ G  G   G  P+  +
Sbjct: 29  GRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLL 67

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 21 EELGFRAGDVIEVLDTLDRDWWWGTRGE 48
            L  RAGDV+ V   +D   ++   GE
Sbjct: 29 GRLALRAGDVVMVYGPMDDQGFY--YGE 54

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 54.1 bits (130), Expect = 1e-09
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 4/72 (5%)

Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRG 180
           +  +       +     V+  A WD+ A + +EL  +  + + +LD   + WW       
Sbjct: 15  NSLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAAN 73

Query: 181 EASGWFPSAFVR 192
             +G+ PS +V 
Sbjct: 74  R-TGYVPSNYVE 84

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 2  DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
               V+  A WD+ A + +EL  +  + + +LD   + WW  
Sbjct: 27 HMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRV 68

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 53.8 bits (129), Expect = 2e-09
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 12/58 (20%)

Query: 144 AVWDHVAMEA------EELGFRAGDVIEVLDTLDRDWWWGTRGEA----SGWFPSAFV 191
           A + +   +        EL   AG  + V   +D D ++   GE      G  PS FV
Sbjct: 22  ARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFY--EGELLDGQRGLVPSNFV 77

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 12/49 (24%)

Query: 11 AVWDHVAMEA------EELGFRAGDVIEVLDTLDRDWWW------GTRG 47
          A + +   +        EL   AG  + V   +D D ++      G RG
Sbjct: 22 ARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRG 70

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 53.1 bits (127), Expect = 2e-09
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 152 EAEELGFRAGDVIEVLDT-LDRDWWWG--TRGEASGWFPSAFVRLRV 195
               L    GD++E+     + +WW G  T     GWFP   V   V
Sbjct: 31  FGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV 77

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 37.3 bits (86), Expect = 9e-04
 Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)

Query: 19 EAEELGFRAGDVIEVLDT-LDRDWWWG 44
              L    GD++E+     + +WW G
Sbjct: 31 FGGFLRLNPGDIVELTKAEAEHNWWEG 57

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA--SGWFPSAFVRL 193
             A++         +    G+ + +++    D W   R +    G+ P++++R+
Sbjct: 10  CVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRV 63

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 5/38 (13%), Positives = 13/38 (34%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
            A++         +    G+ + +++    D W   R
Sbjct: 10 CVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVR 47

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 51.9 bits (125), Expect = 4e-09
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFV 191
           M E+ +V+A   WD+ A + +EL  +  + + +LD   + WW         +G+ PS +V
Sbjct: 1   MTEEVIVIA--KWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANR-TGYVPSNYV 56

Query: 192 RLRVSQE 198
             ++   
Sbjct: 57  ERKLEHH 63

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 1  MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          M E+ +V+A   WD+ A + +EL  +  + + +LD   + WW  
Sbjct: 1  MTEEVIVIA--KWDYTAQQDQELDIKKNERLWLLDD-SKTWWRV 41

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 131 SLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPS 188
           S   +E  VV   A +D+VA + +EL  +  + + +LD   + WW    +  + +G+ PS
Sbjct: 2   STMAEEVVVV---AKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNK-TGFVPS 56

Query: 189 AFVRLRVSQE 198
            +V  + S  
Sbjct: 57  NYVERKNSAR 66

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 4/43 (9%)

Query: 2  DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          +E  VV   A +D+VA + +EL  +  + + +LD   + WW  
Sbjct: 6  EEVVVV---AKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRV 44

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 51.5 bits (124), Expect = 6e-09
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVRLRVSQE 198
            A++ +D VA  + EL     DV+E+LD   R WW      G+ SG+ P+  + +  + E
Sbjct: 3   YAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGD-SGFVPNNILDIMRTPE 60

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 8  LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
           A++ +D VA  + EL     DV+E+LD   R WW  
Sbjct: 3  YAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKV 38

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B* Length = 113

 Score = 52.5 bits (126), Expect = 8e-09
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 454 LIHQGEVIRVTSGMWT--NTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLP 511
           L++ G+++   +        +  FL +  L+       +R  + Y A   +D   ++N+ 
Sbjct: 8   LVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVK 67

Query: 512 DGKG 515
           D   
Sbjct: 68  DNPP 71

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 54.9 bits (131), Expect = 9e-09
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 146 WDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-ASGWFPSAFVRLRVSQEDTVEDC 204
           +D    + E+L F+ GD++ + D  +  WW     E   G  P  +V        +V   
Sbjct: 143 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSAL 202

Query: 205 LAALASGGS 213
           +     G  
Sbjct: 203 IGGNQEGSH 211

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 13  WDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
           +D    + E+L F+ GD++ + D  +  WW     E
Sbjct: 143 FDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSE 178

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 7/63 (11%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVL----DTLDRDWWWGT--RGEASGWFPSAFVRLRVSQ 197
            ++ +     +EL    GD I +      +    W +GT      SG  P  ++  +  +
Sbjct: 21  VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYIT-KADE 79

Query: 198 EDT 200
             T
Sbjct: 80  CST 82

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 4/39 (10%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVL----DTLDRDWWWGT 45
           ++ +     +EL    GD I +      +    W +GT
Sbjct: 21 VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGT 59

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 127 SSVTSLGMDEDFVVLAEAVWDHVAMEAE-ELGFRAGDVIEVLDTLD-----RDWWWG-TR 179
           S   S  +D   +  A A++D V    E E+  + GD++ +L   D      DWW   T+
Sbjct: 2   SEFGSEPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK 61

Query: 180 GEASGWFPSAFVRL 193
               G+ P  ++ +
Sbjct: 62  NGNIGYIPYNYIEI 75

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 1  MDEDFVVLAEAVWDHVAMEAE-ELGFRAGDVIEVLDTLD-----RDWWWG 44
          +D   +  A A++D V    E E+  + GD++ +L   D      DWW  
Sbjct: 9  IDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKV 58

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 127 SSVTSLGMDEDFVVLAEAVWDHVAMEAE-ELGFRAGDVIEVLDTLD-----RDWWWG-TR 179
           S   S  +D   +  A A++D V    E E+  + GD++ +L   D      DWW   T+
Sbjct: 2   SEFGSEPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK 61

Query: 180 GEASGWFPSAFVRL 193
               G+ P  ++ +
Sbjct: 62  NGNIGYIPYNYIEI 75

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 9  AEAVWDHVAMEAE-ELGFRAGDVIEVLDTLD-----RDWWWG 44
          A A++D V    E E+  + GD++ +L   D      DWW  
Sbjct: 17 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKV 58

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 53.9 bits (128), Expect = 2e-08
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 15/85 (17%)

Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD-----WWWG 177
            +  S    L +   F+   +A  D+ A + +EL  +AGDV+ V+   + +     W  G
Sbjct: 126 VEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMG 185

Query: 178 TRGE----------ASGWFPSAFVR 192
            +              G FP  F  
Sbjct: 186 VKESDWNQHKKLEKCRGVFPENFTE 210

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 42.8 bits (99), Expect = 9e-05
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 1   MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD-----WWWGTR 46
           +   F+   +A  D+ A + +EL  +AGDV+ V+   + +     W  G +
Sbjct: 137 LPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVK 187

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 142 AEAVWDHVAMEAE-ELGFRAGDVIEVLD-----TLDRDWWWG-TRGEASGWFPSAFVRL 193
           A A++D V    E E+  + GD++ +L        D DWW   T+    G+ P  ++ +
Sbjct: 10  ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 68

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 9  AEAVWDHVAMEAE-ELGFRAGDVIEVLD-----TLDRDWWWG 44
          A A++D V    E E+  + GD++ +L        D DWW  
Sbjct: 10 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKV 51

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
            A++D+      E+  + GD++ +L++ ++DWW  
Sbjct: 24 VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV 59

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 177
             A++D+      E+  + GD++ +L++ ++DWW  
Sbjct: 24  VLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKV 59

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 142 AEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDRDWWW---GTRGEASGWFPSAFVRL 193
           A  ++D  A     EL    G++I V +      W      +GE  G  P+ +V +
Sbjct: 12  ARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGE-QGLVPTDYVEI 66

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 9  AEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDRDWWW 43
          A  ++D  A     EL    G++I V +      W 
Sbjct: 12 ARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWL 47

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 49.2 bits (117), Expect = 4e-08
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 152 EAEELGFRAGDVIEVLDT-LDRDWWWG--TRGEASGWFPSAFVR 192
               L    GD++E+     + +WW G  T     GWFP   V 
Sbjct: 23  FGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A Length = 108

 Score = 50.0 bits (119), Expect = 6e-08
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 20/98 (20%)

Query: 117 SDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL---DRD 173
           +D +L +D E S          + +A A+ D++A +   L    G V+ V   L    R 
Sbjct: 8   ADRKLCADQECSHP--------ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRL 59

Query: 174 WWWGT--------RGEASGWFPSAFVR-LRVSQEDTVE 202
           +W G+             G+FPS+ VR  +  +   V+
Sbjct: 60  FWGGSVQGDYYGDLAARLGYFPSSIVREDQTLKPGKVD 97

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A Length = 108

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 3  EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL---DRDWWWGT 45
             + +A A+ D++A +   L    G V+ V   L    R +W G+
Sbjct: 19 SHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGS 64

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 54.0 bits (128), Expect = 7e-08
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS----GWFPSAFVRL 193
            A++D+   E +EL F+AGD +  ++  D   W   +G       G +P+ +V  
Sbjct: 432 RALYDYEGQEHDELSFKAGDELTKMEDEDEQGWC--KGRLDNGQVGLYPANYVEA 484

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 44.0 bits (102), Expect = 8e-05
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 10  EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW 43
            A++D+   E +EL F+AGD +  ++  D   W 
Sbjct: 432 RALYDYEGQEHDELSFKAGDELTKMEDEDEQGWC 465

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 25/113 (22%), Positives = 40/113 (35%), Gaps = 13/113 (11%)

Query: 135 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFVRL 193
           D +  V   A++D VA     L    G+ + VL       W   + +   GW PS ++  
Sbjct: 42  DPNLFV---ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITP 98

Query: 194 RVSQEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVRSRVVRELINTERDFV 246
             S E                 + R  +  LLS+    S +VRE  ++     
Sbjct: 99  VNSLEK--HSWY-------HGPVSRNAAEYLLSSGINGSFLVRESESSPGQRS 142

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 44.4 bits (105), Expect = 7e-05
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 3/42 (7%)

Query: 2  DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW 43
          D +  V   A++D VA     L    G+ + VL       W 
Sbjct: 42 DPNLFV---ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWC 80

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 92

 Score = 46.5 bits (110), Expect = 6e-07
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD----RDWWWGTRG 180
           S SS  SL        L +A  +  A +  ++    GD++ V+   D    ++ W    G
Sbjct: 3   SGSSGASLLARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNG 62

Query: 181 EASGWFPSAFVRL 193
              G+  S+F++ 
Sbjct: 63  VTKGFVYSSFLKP 75

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 6e-07
 Identities = 68/570 (11%), Positives = 149/570 (26%), Gaps = 175/570 (30%)

Query: 15  HVAMEAEELGFRAGDVIEV-LDTLDRDWWWGTRGEAFEHLSQIIINHSISPNC-DISKSL 72
           H+  E  E  ++  D++ V  D    ++                       +C D+    
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNF-----------------------DCKDVQDMP 42

Query: 73  KRIRPHHALRRSVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSV--- 129
           K I     +   +     ++    L                       LLS  E  V   
Sbjct: 43  KSILSKEEIDHIIMSKDAVSGTLRLF--------------------WTLLSKQEEMVQKF 82

Query: 130 --TSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFP 187
               L ++  F      +   +  E  +        IE  D L  D              
Sbjct: 83  VEEVLRINYKF------LMSPIKTEQRQPSMMTRMYIEQRDRLYND-------------N 123

Query: 188 SAFVRLRVSQEDTVEDCLAALASGGSKTLRRRTSI----------SLLSNDQVRSRVVRE 237
             F +  VS+         AL       LR   ++          + ++ D   S  V+ 
Sbjct: 124 QVFAKYNVSRLQPYLKLRQAL-----LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 238 LINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKL 297
            ++ +  ++ +           C     +   E +Q +   ++     +S    +++ ++
Sbjct: 179 KMDFKIFWLNL---------KNCNSPETVL--EMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 298 DWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL----FCCRSL---ED 350
                         LK K   + +  + + +        ++          C+ L     
Sbjct: 228 HSIQAELR----RLLKSKP--YENCLLVLLNV-------QNAKAWNAFNLSCKILLTTRF 274

Query: 351 K--ARWLAAFQQERALVEQDREDGLE-------FAPA----AKELAR-----------MS 386
           K    +L+A       ++      L                 ++L R           + 
Sbjct: 275 KQVTDFLSAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 387 AARCHSSRPPTDHPDYVK--ITEALEAMRDVAMLI---NERKRRMESL----------EK 431
           A      R      D  K    + L  + + ++ +    E ++  + L            
Sbjct: 334 AESI---RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 432 LAA--WQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDIL 489
           L +  W   ++     D++   ++L     V +          T+ +    L    +   
Sbjct: 391 LLSLIWFDVIK----SDVMVVVNKLHKYSLVEK-----QPKESTISIPSIYLELKVKLEN 441

Query: 490 KRNTH-----VYKARLNIDTSQIINLP-DG 513
           +   H      Y      D+  +I    D 
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 84/619 (13%), Positives = 173/619 (27%), Gaps = 200/619 (32%)

Query: 3   EDFV--VLAEAVWDHVAME--AEELGFRAGDVIE----------VLDTLDRDWWW----- 43
           +D    +L++   DH+ M   A     R    +           V + L  ++ +     
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98

Query: 44  -----GTRGEAFEHLSQIIINHSISPNCDISK-SLKRIRPHHALRRSVSQPLGINELSPL 97
                        ++ Q   +   + N   +K ++ R++P+  LR+++ +          
Sbjct: 99  KTEQRQPSMMTRMYIEQR--DRLYNDNQVFAKYNVSRLQPYLKLRQALLE---------- 146

Query: 98  LRRKPI----GTRPGDGTNSL---CCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVA 150
           LR        G   G G   +    C   ++    +  +        F       W ++ 
Sbjct: 147 LRPAKNVLIDGV-LGSGKTWVALDVCLSYKVQCKMDFKI--------F-------WLNLK 190

Query: 151 MEAEELGFRAGDVIEVLDTLDR--DWWWGTRGEAS-------GWFPSAFVRLRVSQE--- 198
                       V+E+L  L    D  W +R + S           +   RL  S+    
Sbjct: 191 NC-----NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 199 -----DTVED--CLAALASGGSKTL--RRRTSISLLSNDQVRSRVVRELINTERDFVKVL 249
                  V++     A  +   K L   R   ++   +    + +  +           L
Sbjct: 246 CLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLD------HHSMTL 298

Query: 250 -HDVSEGYLAEC--RRRNDMFSPEQIQTI-------FG----------------NLEDIL 283
             D  +  L +    R  D+  P ++ T                          N + + 
Sbjct: 299 TPDEVKSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 284 AFQSSFLEDLETKLDWDAPYKSC-IGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL 342
               S L  LE   ++   +    +          F P   +     + +       W  
Sbjct: 357 TIIESSLNVLEPA-EYRKMFDRLSV----------FPPSAHIP-TILLSLI------W-- 396

Query: 343 FCCRSLEDKARWLAAFQQERALVEQDREDG--------LEFAPAAKELARM--------S 386
                ++     +     + +LVE+  ++         LE     +    +        +
Sbjct: 397 --FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 387 AARCHS----SRPPTD---------HPDYVKITEALEAMRDVAMLIN----ERKRRMESL 429
             +         P  D         H   ++  E +   R V   ++    E+K R +S 
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV--FLDFRFLEQKIRHDST 512

Query: 430 EKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWT---NTITLFLFDH--QLVYC 484
               AW           ++ T  QL      I      +    N I  FL      L+  
Sbjct: 513 ----AWNAS------GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562

Query: 485 K-RDILKR-----NTHVYK 497
           K  D+L+      +  +++
Sbjct: 563 KYTDLLRIALMAEDEAIFE 581

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 50.1 bits (120), Expect = 9e-07
 Identities = 31/170 (18%), Positives = 64/170 (37%), Gaps = 20/170 (11%)

Query: 138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS--GWFPSAFVRLRV 195
            V    A++D+ +    +L F+ G+ +++++  + DWW          G+ PS +V    
Sbjct: 1   MVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60

Query: 196 SQEDTVEDCLAALASGGSKTLRRRTSISLL--SNDQVRSRVVRELINTERDFVKVLHDVS 253
           S +                 + RR S  LL  + +   + +VRE   T+  +   + D  
Sbjct: 61  SIQAEEWYF---------GKITRRESERLLLNAENPRGTFLVRESETTKGAYCLSVSDFD 111

Query: 254 EGYLAECR------RRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKL 297
                  +        +  F        F +L+ ++A+ S   + L  +L
Sbjct: 112 NAKGLNVKHYKIRKLDSGGFYITSRTQ-FNSLQQLVAYYSKHADGLCHRL 160

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 9/38 (23%), Positives = 22/38 (57%)

Query: 5  FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWW 42
           V    A++D+ +    +L F+ G+ +++++  + DWW
Sbjct: 1  MVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWW 38

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA--SGWFPSAFVRLRVSQE 198
           A ++      ++L F  GDV+ ++       W+  + +    G  P+ +V+ R   +
Sbjct: 16  AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREGVK 72

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 7/36 (19%), Positives = 16/36 (44%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
          A ++      ++L F  GDV+ ++       W+  +
Sbjct: 16 AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAK 51

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 45.9 bits (108), Expect = 6e-06
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS- 183
           S SS  +     D      A+++     A +L  + GDV+ + +T   DW+ G   +   
Sbjct: 3   SGSSGMAPWRKADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKM 61

Query: 184 --GWFPSAFVRLRVSQEDTVEDC 204
             G FP +F+ ++    +   + 
Sbjct: 62  LQGIFPKSFIHIKEVTVEKRRNT 84

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 143 EAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVSQED 199
            A++ H    A+E+    GD+I V       +  G   +   +G +PS  VR ++    
Sbjct: 446 IAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIETVK 504

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 28/162 (17%), Positives = 52/162 (32%), Gaps = 22/162 (13%)

Query: 133 GMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAF 190
            + ++ V+   A+  +      +LGF  G+ + +L+    +WW          G+ P  F
Sbjct: 9   PLQDNLVI---ALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNF 64

Query: 191 VRLRVSQEDTVEDCLAALASGGSKTLRRRTSISLLSNDQVR--SRVVRELINTERDFVKV 248
           V    S E               K L R+ +   L        S ++RE  +T   F   
Sbjct: 65  VAKANSLEPEPWFF---------KNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLS 115

Query: 249 LHDVSEGYLAECRRRNDMFSPEQIQTI-----FGNLEDILAF 285
           + D  +      +             I     F  L +++  
Sbjct: 116 VRDFDQNQGEVVKHYKIRNLDNGGFYISPRITFPGLHELVRH 157

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 42.7 bits (100), Expect = 7e-05
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 2  DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG----TRGEAFEHLSQII 57
           ++ V+   A+  +      +LGF  G+ + +L+    +WW      T  E F   + + 
Sbjct: 11 QDNLVI---ALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVA 66

Query: 58 INHSISPNCDISKSLKRIRPHHALR 82
            +S+ P     K+L R      L 
Sbjct: 67 KANSLEPEPWFFKNLSRKDAERQLL 91

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 35/185 (18%), Positives = 71/185 (38%), Gaps = 20/185 (10%)

Query: 123 SDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW--GTRG 180
           SD+ +S    G     V    A++D+ +    +L F+ G+ +++++  + DWW       
Sbjct: 69  SDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLST 128

Query: 181 EASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLRRRTSISLL--SNDQVRSRVVREL 238
             +G+ PS +V    S +                 + RR S  LL  + +   + +VRE 
Sbjct: 129 GQTGYIPSNYVAPSDSIQAEEWYF---------GKITRRESERLLLNAENPRGTFLVRES 179

Query: 239 INTERDFVKVLHDVSEGYLAECR------RRNDMFSPEQIQTIFGNLEDILAFQSSFLED 292
             T+  +   + D         +        +  F        F +L+ ++A+ S   + 
Sbjct: 180 ETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQ-FNSLQQLVAYYSKHADG 238

Query: 293 LETKL 297
           L  +L
Sbjct: 239 LCHRL 243

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 17/71 (23%)

Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---------------WWWGT--RGEA 182
               A++       E+L    GDV+ V     +                W  G   R   
Sbjct: 12  FQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQ 71

Query: 183 SGWFPSAFVRL 193
            G FP  +V  
Sbjct: 72  RGDFPGTYVEF 82

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 129 VTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW--GTRGEASGWF 186
               G+    V    A++D+ A+  E+L F+ GD + VL+    +WW          G+ 
Sbjct: 2   AMGSGIRIIVV----ALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYI 56

Query: 187 PSAFVRLRVSQE 198
           PS +V    S E
Sbjct: 57  PSNYVARVDSLE 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	518
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	100.0
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	100.0
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	100.0
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	100.0
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	100.0
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	100.0
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	100.0
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	100.0
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	100.0
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	100.0
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	100.0
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	100.0
1foe_A	377	T-lymphoma invasion and metastasis inducing protei	100.0
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	100.0
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	100.0
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	100.0
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	100.0
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	100.0
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	100.0
1by1_A	209	Protein (PIX); RHO-GTPase exchange factor, transpo	100.0
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.92
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.91
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.91
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.88
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	99.81
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.76
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.65
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.65
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.63
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.62
2lg1_A	185	A-kinase anchor protein 13; metal binding protein;	99.6
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.58
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.58
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.55
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.55
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.55
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.55
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.54
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.54
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.54
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.54
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.54
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.54
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.54
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.54
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.54
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.54
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.54
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.53
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.53
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.53
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.53
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.53
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.53
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.53
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.52
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.52
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.52
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.52
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.52
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.52
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.52
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.52
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.52
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.52
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.52
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.52
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.52
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.52
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.52
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.52
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.51
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.51
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.51
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.51
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.51
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.51
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.51
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.51
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.51
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.51
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.51
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.51
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.51
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.51
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.51
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.51
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.51
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.51
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.51
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.51
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.51
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.51
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.5
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.5
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.5
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.5
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.5
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.5
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.5
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.5
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.5
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.5
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.5
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.5
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.5
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.5
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.5
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.5
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.5
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.5
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.49
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.49
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.49
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.49
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.49
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.49
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.49
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.49
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.49
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.49
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.49
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.49
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.49
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.49
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.49
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.49
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.49
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.49
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.49
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.49
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.49
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.48
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.48
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.48
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.48
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.48
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.48
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.48
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.48
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.48
3u23_A	65	CD2-associated protein; structural genomics, struc	99.48
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.48
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.48
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.48
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.48
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.48
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.48
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.48
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.48
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.47
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.47
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.47
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.47
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.47
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.47
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.47
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.47
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.47
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.47
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.47
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.47
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.47
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.47
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.47
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.47
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.47
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.47
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.47
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.46
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.46
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.46
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.46
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.46
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.46
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.46
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.46
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.46
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.46
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.46
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.46
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.46
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.46
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.46
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.46
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.46
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.46
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.46
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.45
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.45
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.45
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.45
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.45
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.45
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.45
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.45
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.45
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.45
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.45
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.45
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.45
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.45
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.45
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.45
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.45
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.45
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.45
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.45
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.45
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.45
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.45
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.45
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.45
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.45
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.45
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.45
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.45
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.45
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.45
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.44
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.44
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.44
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.44
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.44
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.44
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.44
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.44
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.44
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.44
3u23_A	65	CD2-associated protein; structural genomics, struc	99.44
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.44
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.44
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.44
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.44
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.44
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.44
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.44
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.44
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.44
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.44
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.44
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.43
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.43
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.43
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.43
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.43
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.43
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.43
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.43
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.43
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.43
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.43
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.43
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.43
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.43
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.43
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.43
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.43
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.42
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.42
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.42
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.42
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.42
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.42
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.42
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.42
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.42
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.42
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.42
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.42
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.42
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.42
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.42
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.42
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.41
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.41
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.41
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.41
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.41
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.41
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.41
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.41
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.41
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.41
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.41
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.41
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.41
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.41
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	99.41
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.41
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.41
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.41
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.4
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.4
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.4
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.4
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.4
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.4
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.4
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.4
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.4
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.4
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.4
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.4
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.39
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.39
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.39
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.39
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.39
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.39
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.39
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.39
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.38
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.38
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.38
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.38
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.38
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.38
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.38
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.38
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.38
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.38
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.37
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.37
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.37
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.37
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.37
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.36
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.36
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.36
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.35
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.34
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.34
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.33
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.33
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.33
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.33
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.32
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.32
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.31
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.31
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.31
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.31
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.31
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.3
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.3
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.3
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.3
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.29
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.29
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.29
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.29
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.29
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.28
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	99.28
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.27
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.27
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.27
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.27
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.26
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.26
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.25
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.24
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.23
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.22
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.22
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.21
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.21
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.19
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.16
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.16
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.16
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	99.15
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	99.15
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.13
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.12
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	99.12
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.11
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.1
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	99.1
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.09
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.68
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.05
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.04
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.04
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	99.04
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.02
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	99.01
1u3o_A	82	Huntingtin-associated protein-interacting protein;	99.0
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	98.99
1u3o_A	82	Huntingtin-associated protein-interacting protein;	98.96
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	98.91
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	98.88
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	98.87
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	98.87
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	98.86
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	98.84
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	98.83
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	98.8
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	98.8
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	98.79
3qwm_A	140	Iqsec1, IQ motif and SEC7 domain-containing protei	98.79
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.75
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.74
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.73
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.73
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	98.69
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.67
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	98.67
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	98.64
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.6
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	98.59
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.57
1fho_A	119	UNC-89; pleckstrin homology domain, electrostatics	98.52
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.51
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.51
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	98.44
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	98.43
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.4
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.25
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.17
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	98.16
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.13
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.06
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.05
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	98.0
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.0
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.98
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	97.97
4gou_A	518	EHRGS-rhogef; RGS domain, DH domain, PH domain, RH	97.97
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.96
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	97.94
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	97.91
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.86
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.82
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	97.75
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	97.51
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	97.09
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	95.58
2krs_A	74	Probable enterotoxin; all beta, SH3, ENTD, CPF_058	94.03
2kt8_A	76	Probable surface protein; SH3 family, structural g	93.97
2kq8_A	70	Cell WALL hydrolase; GFT protein structure, NESG,	92.8
1wfw_A	74	Kalirin-9A; SH3 domain, neuron-specific GDP/GTP ex	91.25
2kt8_A	76	Probable surface protein; SH3 family, structural g	87.58
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	87.26
3npf_A	306	Putative dipeptidyl-peptidase VI; structural genom	87.12
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	87.05
2d9y_A	117	Pleckstrin homology domain-containing protein fami	86.85
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	86.83
1wfw_A	74	Kalirin-9A; SH3 domain, neuron-specific GDP/GTP ex	86.67
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	86.4
2krs_A	74	Probable enterotoxin; all beta, SH3, ENTD, CPF_058	86.34
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	85.5
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	84.87
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	84.86
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	84.85
2yry_A	122	Pleckstrin homology domain-containing family A mem	84.28
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	83.48
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	82.2
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	81.79
2dkp_A	128	Pleckstrin homology domain-containing family A mem	81.38
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	81.01

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=100.00  E-value=1e-64  Score=526.13  Aligned_cols=365  Identities=41%  Similarity=0.759  Sum_probs=312.8

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccCCCchHHHHHhhhcCCCcccc
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLR  217 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (518)
                      ....++|+|||.+..++||+|++||+|.|++..++|||.|+.+|+.||||++||+.+.+..++.+.+...........  
T Consensus        29 ~~~~~~al~~~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~~~~~~~~~~~~~~~~--  106 (466)
T 2pz1_A           29 SVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEPADDDAPLAGNSGAED--  106 (466)
T ss_dssp             CCEEEEESSCBCCCCTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSCC--------------------
T ss_pred             CccEEEEccccCCCCCCcCCCCCCCEEEEEEecCCCEEEEEECCcEEEEehhHeeeccCccccCCCCCCCCCcccccc--
Confidence            357899999999999999999999999999999999999999999999999999998876655444322111111000  


Q ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhh
Q psy824          218 RRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKL  297 (518)
Q Consensus       218 ~~~~~~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~  297 (518)
                       ....++.+++.+|+++|+||++||++||++|+.+.+.|+.|+....++++..++..||+||++|+.+|+.||..|+.+.
T Consensus       107 -~~~~~~~~~~~kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~Le~~~  185 (466)
T 2pz1_A          107 -GGAEAQSSKDQMRTNVINEILSTERDYIKHLRDICEGYVRQCRKRADMFSEEQLRTIFGNIEDIYRCQKAFVKALEQRF  185 (466)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHC
T ss_pred             -CCCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence             1123356789999999999999999999999999999999997566889999999999999999999999999999998


Q ss_pred             CCCCCCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHH--hhcchHHHHHHHHHHHhhccccccCccCCCc
Q psy824          298 DWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFC--CRSLEDKARWLAAFQQERALVEQDREDGLEF  375 (518)
Q Consensus       298 ~~~~~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~--~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~  375 (518)
                      ..+.+....||++|+++.+.|+.         |..||.||+.+...+  +.+++.|..|++.|+..+.+.+.. |.+||+
T Consensus       186 ~~~~~~~~~ig~~fl~~~~~f~~---------Y~~Y~~n~~~a~~~l~~~~~~~~f~~f~~~~~~~~~~~~l~-L~~~Li  255 (466)
T 2pz1_A          186 NRERPHLSELGACFLEHQADFQI---------YSEYCNNHPNACVELSRLTKLSKYVYFFEACRLLQKMIDIS-LDGFLL  255 (466)
T ss_dssp             CSSCGGGCCCHHHHHHTHHHHTT---------HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTCCSCC-HHHHHH
T ss_pred             ccCCCccchHHHHHHHhhHHHHH---------HHHHHHhhHHHHHHHHHHHhccHHHHHHHHHHHhhhhccCC-HHHHhh
Confidence            64455567899999999999977         999999999986533  234567899999998877666655 999999


Q ss_pred             chhhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccccceE
Q psy824          376 APAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLI  455 (518)
Q Consensus       376 ~PvQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~r~ll  455 (518)
                      +|||||+||+|||++|+|+|+.+|+||..|+.|++.++.++..+|+.+++.|+.+++.+++.+|.||++.+|..++|+||
T Consensus       256 ~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~~~~~l~~~~r~li  335 (466)
T 2pz1_A          256 TPVQKICKYPLQLAELLKYTHPQHRDFKDVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSELI  335 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBTCCSSCHHHHCSCEE
T ss_pred             hHHHHhhhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccceeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888999999999


Q ss_pred             eeeeEEEEecC-cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCCC
Q psy824          456 HQGEVIRVTSG-MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKG  515 (518)
Q Consensus       456 ~~g~l~~~~~~-~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~  515 (518)
                      ++|.+.++... .+.+++++|||||+||+||++..++..|.|+++|+|.++.|.+++|+++
T Consensus       336 ~~G~l~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~  396 (466)
T 2pz1_A          336 YSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKD  396 (466)
T ss_dssp             EEEEEEEECTTTCCEEEEEEEEETTEEEEEEECSSCTTCEEEEEEEETTTCEEEECCSBSC
T ss_pred             EeeeEEEEecCCCCeeEEEEEEECCEEEEEEeccccCCceEEeeeeeccceEEEeCCCCcc
Confidence            99999988652 3357899999999999999876667889999999999999999999864

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1

Probab=100.00  E-value=3.3e-51  Score=415.62  Aligned_cols=306  Identities=35%  Similarity=0.597  Sum_probs=259.0

Q ss_pred             chHHHHHhhhcCCCcc--ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhc
Q psy824          200 TVEDCLAALASGGSKT--LRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFG  277 (518)
Q Consensus       200 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~  277 (518)
                      .++++......+...+  +++....++.+++.+|+.+|+||++||++||++|+.+.+.|+.|+....++++..++..||+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~pl~~~~~~l~~~~~~~iF~   88 (402)
T 2dfk_A            9 GVEEGPSDVQNGHLDPNSDCLCLGRPLQNRDQMRANVINEIMSTERHYIKHLKDICEGYLKQCRKRRDMFSDEQLKVIFG   88 (402)
T ss_dssp             -------------------CCCCSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCTTTCCHHHHHHHHT
T ss_pred             chhhhhhcccccccCCCCcchhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHh
Confidence            4455544444433222  22444556778999999999999999999999999999999999975567899999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHH--hhcchHHHHHH
Q psy824          278 NLEDILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFC--CRSLEDKARWL  355 (518)
Q Consensus       278 ni~~i~~~h~~~l~~L~~~~~~~~~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~--~~~~~~~~~fl  355 (518)
                      ||++|+.+|+.||..|+.+...+.+....||++|+++.+.|+.         |..||.||+.+...+  +.+++.|..|+
T Consensus        89 ni~~I~~~h~~fL~~Le~~~~~~~~~~~~ig~ifl~~~~~f~~---------Y~~Y~~n~~~a~~~l~~~~~~~~f~~fl  159 (402)
T 2dfk_A           89 NIEDIYRFQMGFVRDLEKQYNNDDPHLSEIGPCFLEHQDGFWI---------YSEYCNNHLDACMELSKLMKDSRYQHFF  159 (402)
T ss_dssp             THHHHHHHHHHHHHHHHHHCCSSCGGGCCCHHHHHHTTTGGGH---------HHHHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhHH---------HHHHHHhhHHHHHHHHHHHcChHHHHHH
Confidence            9999999999999999999864455567899999999999866         999999999986543  23457889999


Q ss_pred             HHHHHhhccccccCccCCCcchhhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy824          356 AAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAW  435 (518)
Q Consensus       356 ~~~~~~~~~~~~~~l~~~L~~PvQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~  435 (518)
                      +.|+..+.+.+.. |.+||++|||||+||+|||++|+|+||.+|+||..|+.|++.++.++..+|+.+++.|+..++.++
T Consensus       160 ~~~~~~~~~~~l~-L~s~Li~PvQRi~rY~LLL~~Llk~t~~~~~d~~~L~~Al~~i~~v~~~iNe~~r~~e~~~~l~~l  238 (402)
T 2dfk_A          160 EACRLLQQMIDIA-IDGFLLTPVQKICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQINERKRRLENIDKIAQW  238 (402)
T ss_dssp             HHHHHHTTCCSCC-HHHHHTHHHHHHHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHhhhhcccCC-HHHHHhHHHHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998876666655 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccCCCccccccccceEeeeeEEEEecC-cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824          436 QQRVEGWEGEDLIETSSQLIHQGEVIRVTSG-MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       436 ~~~i~~~~~~~l~~~~r~ll~~g~l~~~~~~-~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      +.+|.||++.+|..++|+||++|.+.++... ...+++++|||||+||+||++..++..|.|+++|+|.++.|.+++|++
T Consensus       239 q~~i~~~~~~~l~~~~r~Li~~G~l~~~~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~  318 (402)
T 2dfk_A          239 QASVLDWEGDDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGR  318 (402)
T ss_dssp             HHHSBTCCSSCGGGTCCCEEEEEEEEEESSTTCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEE
T ss_pred             HHHhcCCCCccccccccceEEeceEEEEeccCCceEEEEEEeeCCEEEEEEeccccCCceEEeeeeeccceEEEecCCCC
Confidence            9999999988899999999999999988652 235789999999999999987666678999999999999999999876


Q ss_pred             C
Q psy824          515 G  515 (518)
Q Consensus       515 ~  515 (518)
                      +
T Consensus       319 ~  319 (402)
T 2dfk_A          319 D  319 (402)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=100.00  E-value=9.7e-52  Score=401.40  Aligned_cols=276  Identities=21%  Similarity=0.324  Sum_probs=238.5

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccCCCchHHHHHhhhcCCCcccccc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCLAALASGGSKTLRRR  219 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (518)
                      ..++|+|||.++.++||+|++||+|.|++..++|||.|+.+|+.||||++||+.+.........+     ...      .
T Consensus         3 ~~~~a~~~~~~~~~~el~~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~q~~-----~~~------~   71 (283)
T 3jv3_A            3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDPSQQWC-----SDL------H   71 (283)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEEETTEEEEEEGGGEEEGGGSCHHHHHC-----TTC------T
T ss_pred             eEEEEccccCCCCCCcCCCCCCCEEEEEecCCCCEEEEEECCCCCcCCCccccccCccccccccc-----cch------h
Confidence            58999999999999999999999999999999999999999999999999999987654322211     100      1


Q ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCC
Q psy824          220 TSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDW  299 (518)
Q Consensus       220 ~~~~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~  299 (518)
                      ...++.+.+.+|+++|+||++||++||++|+.+.+.|+.||. ..+.++..++..||+|+++|+.+|+.||..|+.+...
T Consensus        72 ~~~~l~~~e~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~-~~~~l~~~~~~~iF~ni~~i~~~~~~fl~~L~~~~~~  150 (283)
T 3jv3_A           72 LLDMLTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQKPLT-ESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKM  150 (283)
T ss_dssp             TGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH-TTCSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhcHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc-ccCCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHhc
Confidence            123456678999999999999999999999999999999998 5688999999999999999999999999999987631


Q ss_pred             --CCCCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHH---HHhhcchHHHHHHHHHHHhhccccccCccCCC
Q psy824          300 --DAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL---FCCRSLEDKARWLAAFQQERALVEQDREDGLE  374 (518)
Q Consensus       300 --~~~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~---~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L  374 (518)
                        .......||++|+++.+.|+.         |..||.||+.+..   .+.++++.|..|++.++..+.+.+.. |.+||
T Consensus       151 ~~~~~~~~~ig~~f~~~~~~~~~---------Y~~Y~~~~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~-L~s~L  220 (283)
T 3jv3_A          151 SGEKMPVKMIGDILSAQLPHMQP---------YIRFCSCQLNGAALIQQKTDEAPDFKEFVKRLAMDPRCKGMP-LSSFI  220 (283)
T ss_dssp             HCTTCCCCCCHHHHHHHGGGGTH---------HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSGGGTTCC-HHHHT
T ss_pred             cccCCchhHHHHHHHHHHhhchh---------HHHHHcCHHHHHHHHHHHHhcCHHHHHHHHHHHhCccccCCC-HHHHh
Confidence              222357899999999999877         8999999998854   34566788999999998877777765 99999


Q ss_pred             cchhhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy824          375 FAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQ  437 (518)
Q Consensus       375 ~~PvQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~  437 (518)
                      ++||||++||+|||++|+|+||.+|+|+..|+.|++.++.++..+|+.+++.|+.++|.+||+
T Consensus       221 i~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~i~~v~~~iNe~~r~~e~~~~l~~iQs  283 (283)
T 3jv3_A          221 LKPMQRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDRLEWIQA  283 (283)
T ss_dssp             THHHHHHHHHHHHHHHHHTTSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC-----
T ss_pred             hhhHHHhcchHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999999999998874

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*

Probab=100.00  E-value=7e-47  Score=380.91  Aligned_cols=285  Identities=16%  Similarity=0.218  Sum_probs=240.2

Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCC
Q psy824          222 ISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDA  301 (518)
Q Consensus       222 ~~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~  301 (518)
                      ..+.+++.+|+.+|+||++||++||++|+.+.+.|+.||. ..+.+++.++..||+||++|+.+|+.||..|+.+... .
T Consensus        13 ~~l~~~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~l~-~~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~-~   90 (368)
T 1xcg_A           13 AGLTQREIDRQEVINELFVTEASHLRTLRVLDLIFYQRMK-KENLMPREELARLFPNLPELIEIHNSWCEAMKKLREE-G   90 (368)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HTTSSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHT-C
T ss_pred             hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhc-C
Confidence            3467789999999999999999999999999999999998 4678999999999999999999999999999998742 2


Q ss_pred             CCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHH---hhcchHHHHHHHHHHHhhccccccCccCCCcchh
Q psy824          302 PYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFC---CRSLEDKARWLAAFQQERALVEQDREDGLEFAPA  378 (518)
Q Consensus       302 ~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~---~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~Pv  378 (518)
                      +..+.||++|+++.+..   ....+..+|..||+||+.+...+   .++++.|..|++.|+..+.+.+.. |.+||++||
T Consensus        91 ~~~~~ig~~f~~~~~~~---~~~~~~~~Y~~Y~~~~~~a~~~l~~~~~~~~~f~~fl~~~~~~~~~~~l~-L~~~Li~Pv  166 (368)
T 1xcg_A           91 PIIKEISDLMLARFDGP---AREELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQ-LRDLIISEM  166 (368)
T ss_dssp             SSCCCCHHHHHHHHSHH---HHHHHHHHHHHHHTTHHHHHHHHHHHHHHCHHHHHHHHHHHTSGGGTTCC-HHHHTTHHH
T ss_pred             CCcCcHHHHHHHHccch---hHHHHHHHHHHHHhhHHHHHHHHHHHHhCCHHHHHHHHHHHhChhhccCC-hHHHhhhHh
Confidence            34678999999975421   00112345999999999986543   456789999999998877776665 999999999


Q ss_pred             hHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCC-----------ccc
Q psy824          379 AKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEG-----------EDL  447 (518)
Q Consensus       379 QRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~-----------~~l  447 (518)
                      ||++||+|||++|+|+|+.+|+||..|+.|++.++.++..+|+.+++.|+..++.+++++|.++..           .+|
T Consensus       167 QRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~~~~v~~~vN~~~~~~e~~~~l~~i~~~l~~~~~~~~~~pl~~~~~~l  246 (368)
T 1xcg_A          167 QRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSL  246 (368)
T ss_dssp             HHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHSCSCTTTGGGGGC
T ss_pred             hhhhhHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhcccchhhhhhhc
Confidence            999999999999999999999999999999999999999999999999999999999999986320           235


Q ss_pred             cccccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccCC--------------CCceEEEEEeecCCeeEEEcCC
Q psy824          448 IETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILK--------------RNTHVYKARLNIDTSQIINLPD  512 (518)
Q Consensus       448 ~~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~--------------~~~~~~k~~i~l~~~~v~~~~d  512 (518)
                      ..++|+||++|.+.+...+...+++++|||||+||+|+++..+              ..+|.+++.|+|+++.|.++++
T Consensus       247 ~~~~R~li~~G~l~~~~~~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~  325 (368)
T 1xcg_A          247 DLTTRKMIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVAT  325 (368)
T ss_dssp             CGGGSCEEEEEEEEECCSSSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECSS
T ss_pred             ccccceEEeecceEeeecCCCeeEEEEEcccccHHHhhcccccceeeeccccccCCCCcccCcCCceEccceeeecccC
Confidence            5678999999999875444446799999999999999976321              2367889999999999999753

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A

Probab=100.00  E-value=3.7e-47  Score=379.51  Aligned_cols=275  Identities=17%  Similarity=0.236  Sum_probs=228.8

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCC
Q psy824          223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAP  302 (518)
Q Consensus       223 ~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~  302 (518)
                      .+++.+.+|+.+|+||++||++||++|+.+.+.|+.||. ..+++++.++..||+|+++|+.+|+.||..|+.+...+. 
T Consensus        12 ~l~~~~~kR~~vi~Eli~TE~~Yv~~L~~l~~~y~~~l~-~~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~-   89 (346)
T 2z0q_A           12 VLTAKEIKRQEAIFELSQGEEDLIEDLKLAKKAYHDPML-KLSIMTEQELNQIFGTLDSLIPLHEELLSQLRDVRKPDG-   89 (346)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HTTSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCTTS-
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHhccHHHHHHHHHHHHHHHHHHhccCC-
Confidence            466788999999999999999999999999999999998 457899999999999999999999999999999985332 


Q ss_pred             CCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHH--hhcchHHHHHHHHHHHhhccccccCccCCCcchhhH
Q psy824          303 YKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFC--CRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAK  380 (518)
Q Consensus       303 ~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~--~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQR  380 (518)
                      ....||++|+++.+.|+.         |..||.||+.+...+  +++++.|..|++.|+..+.+.+.. |.+||++||||
T Consensus        90 ~~~~ig~~f~~~~~~~~~---------Y~~Y~~n~~~a~~~l~~~~~~~~f~~fl~~~~~~~~~~~l~-L~~~L~~PvQR  159 (346)
T 2z0q_A           90 STEHVGPILVGWLPCLSS---------YDSYCSNQVAAKALLDHKKQDHRVQDFLQRCLESPFSRKLD-LWNFLDIPRSR  159 (346)
T ss_dssp             CCSCCHHHHHHHGGGGGH---------HHHHHHHHHHHHHHHHHHTTCHHHHCC-------------C-TTTGGGHHHHH
T ss_pred             ccchHHHHHHHHhhHHHH---------HHHHHHCHHHHHHHHHHhhcCHHHHHHHHHHHhCccCCCCC-HHHHHHHHHHH
Confidence            367899999999999876         999999999986533  456788999999998776666665 99999999999


Q ss_pred             HHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccccceEeeeeE
Q psy824          381 ELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEV  460 (518)
Q Consensus       381 l~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~r~ll~~g~l  460 (518)
                      ++||+|||++|+|+||.+|+||..|+.|++.++.++..+|+.+++.|+...+..++....++. .++..++|.||++|.+
T Consensus       160 i~rY~LLL~~llk~t~~~~~d~~~l~~A~~~~~~v~~~iN~~~~~~e~~~~~~~l~~~~~~~~-~~l~~~~r~li~~G~l  238 (346)
T 2z0q_A          160 LVKYPLLLREILRHTPNDNPDQQHLEEAINIIQGIVAEINTKTGESECRYYKERLLYLEEGQK-DSLIDSSRVLCCHGEL  238 (346)
T ss_dssp             HHHHHHHHHHHHHTSCTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCSTTCC-CHHHHTCCCEEEEEEE
T ss_pred             HhhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-CccccCCeEEEEecee
Confidence            999999999999999999999999999999999999999999999999887766655445554 4688889999999998


Q ss_pred             EEEecCcccceEEEEEeCCeEEEEeeccCCC-CceE-EEEEeecCCeeEEEcCCCC
Q psy824          461 IRVTSGMWTNTITLFLFDHQLVYCKRDILKR-NTHV-YKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       461 ~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~-~~~~-~k~~i~l~~~~v~~~~d~~  514 (518)
                      .+. .   .+++++|||||+||+||++..++ ..|. ++++|||..+.|.+++|++
T Consensus       239 ~~~-~---~~~~~~fLF~d~Ll~~k~~~~~~~~~~~v~k~~i~l~~l~v~~~~d~~  290 (346)
T 2z0q_A          239 KNN-R---GVKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDGE  290 (346)
T ss_dssp             EET-T---SCEEEEEEESSEEEEEEEEEETTEEEEEESSCCEEGGGCEEEECCTTT
T ss_pred             EEC-C---CcEEEEEECCCcEEEEEEeccCCceeeeeecCCcchhhceeeecCCCc
Confidence            752 2   36899999999999999864322 2344 6889999999999999885

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=100.00  E-value=4.7e-46  Score=379.29  Aligned_cols=270  Identities=22%  Similarity=0.311  Sum_probs=237.0

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCCC
Q psy824          224 LLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPY  303 (518)
Q Consensus       224 ~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~  303 (518)
                      ..+.+.+|+.+|+||++||++||++|+.+.+.|+.||+   ..+++.++..||+||++|+.+|+.||.+|+++...+  .
T Consensus        19 ~~~~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~l~---~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~--~   93 (406)
T 2vrw_B           19 KMTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQ---RFLKPQDMETIFVNIEELFSVHTHFLKELKDALAGP--G   93 (406)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHT---TTSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSG--G
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCC--C
Confidence            34568999999999999999999999999999999996   378999999999999999999999999999998532  2


Q ss_pred             CCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHH---HhhcchHHHHHHHHHHHhhccccccCccCCCcchhhH
Q psy824          304 KSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLF---CCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAK  380 (518)
Q Consensus       304 ~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~---~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQR  380 (518)
                      ...||++|+++.+.|+.         |..||.||+.+...   +.+.++.|..|++.++..+.+.+.. |.+||++||||
T Consensus        94 ~~~ig~~f~~~~~~~~~---------Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~-L~~~Li~PvQR  163 (406)
T 2vrw_B           94 ATTLYQVFIKYKERFLV---------YGRYCSQVESASKHLDQVATAREDVQMKLEECSQRANNGRFT-LRDLLMVPMQR  163 (406)
T ss_dssp             GTTHHHHHHHHTTGGGH---------HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTSCC-HHHHTTHHHHH
T ss_pred             ccHHHHHHHHHHHHHHH---------HHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHhhccccCCcc-hHHHhhhHHHH
Confidence            47899999999998876         99999999998643   4456789999999998776666665 99999999999


Q ss_pred             HHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccccceEeeeeE
Q psy824          381 ELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEV  460 (518)
Q Consensus       381 l~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~r~ll~~g~l  460 (518)
                      ++||+|||++|+|+| ++|+|+..|++|++.++.++..+|+.+++.|+..++.+++..|+||++ +|..++ +++++|.+
T Consensus       164 i~rY~LLL~~llk~t-~~~~d~~~l~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~~~-~l~~~g-rli~~G~l  240 (406)
T 2vrw_B          164 VLKYHLLLQELVKHT-QDATEKENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQ-SLANYG-RPKIDGEL  240 (406)
T ss_dssp             HTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEESCSS-CGGGGC-SEEEEEEE
T ss_pred             HhhHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-cccccC-cccccccE
Confidence            999999999999999 899999999999999999999999999999999999999999999875 477764 59999999


Q ss_pred             EEEecC-cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824          461 IRVTSG-MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       461 ~~~~~~-~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      .+.... +..+++++|||||+||+||++   +.+|.++..|+|..+.|.+.++++
T Consensus       241 ~~~~~~~~~~~~~~~fLF~d~Ll~~k~k---~~~y~~k~~i~l~~~~v~~~~~~~  292 (406)
T 2vrw_B          241 KITSVERRSKTDRYAFLLDKALLICKRR---GDSYDLKASVNLHSFQVRDDSSGE  292 (406)
T ss_dssp             EEECSSCCSCEEEEEEEESSEEEEEEEE---TTEEEEEEEEETTTEEEEC-----
T ss_pred             EEEecCCCccceEEEEecCCEEEEEEec---CCceEEEEEecccceeeeecCCCC
Confidence            887543 345799999999999999987   678999999999999999998875

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}

Probab=100.00  E-value=5.3e-46  Score=380.77  Aligned_cols=286  Identities=15%  Similarity=0.212  Sum_probs=244.7

Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCC
Q psy824          222 ISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDA  301 (518)
Q Consensus       222 ~~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~  301 (518)
                      ..+.+++.+|+++|+||++||+.||++|+.+.+.|+.||. ..+.+++.++..||+||++|+.+|+.||..|+.+... .
T Consensus        55 ~~l~~~e~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~-~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~-~  132 (418)
T 3t06_A           55 AGLTQREIDRQEVINELFVTEASHLRTLRVLDLIFYQRMK-KENLMPREELARLFPNLPELIEIHNSWCEAMKKLREE-G  132 (418)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HTTSSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHGGG-C
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHhc-C
Confidence            3466789999999999999999999999999999999998 5688999999999999999999999999999998853 2


Q ss_pred             CCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHH---HhhcchHHHHHHHHHHHhhccccccCccCCCcchh
Q psy824          302 PYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLF---CCRSLEDKARWLAAFQQERALVEQDREDGLEFAPA  378 (518)
Q Consensus       302 ~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~---~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~Pv  378 (518)
                      +....||++|+++.+.|.   ...+..+|..||.||+.+...   +.++++.|..|++.++..+.+.+.. |.+||++||
T Consensus       133 ~~~~~ig~ifl~~~~~~~---~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~~~~~~~l~-L~s~Li~Pv  208 (418)
T 3t06_A          133 PIIKEISDLMLARFDGPA---REELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQ-LRDLIISEM  208 (418)
T ss_dssp             SSCCCCHHHHHHHHSTHH---HHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHTTSGGGTTCC-HHHHTTHHH
T ss_pred             CCcCcHHHHHHHhcchhh---hHHHhhhhHHHhhhHHHHHHHHHHHHhcCHHHHHHHHHHHhCcccccCC-HHHHHhhHH
Confidence            346789999999876541   123445699999999998654   3456889999999998877777665 999999999


Q ss_pred             hHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCC-----------ccc
Q psy824          379 AKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEG-----------EDL  447 (518)
Q Consensus       379 QRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~-----------~~l  447 (518)
                      ||++||+|||++|+|+|+.+|+||..|++|++.++.++..+|+.+++.|+..++.+++.+|.++..           .++
T Consensus       209 QRi~rY~LLL~~llk~t~~~~~d~~~L~~A~~~i~~v~~~iN~~~~~~e~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~l  288 (418)
T 3t06_A          209 QRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLDATALERASNPLAAEFKSL  288 (418)
T ss_dssp             HHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEECCTTSSCSCTTTTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccccccchhhccc
Confidence            999999999999999999999999999999999999999999999999999999999999987532           234


Q ss_pred             cccccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccC--------------CCCceEEEEEeecCCeeEEEcCCC
Q psy824          448 IETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDIL--------------KRNTHVYKARLNIDTSQIINLPDG  513 (518)
Q Consensus       448 ~~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~--------------~~~~~~~k~~i~l~~~~v~~~~d~  513 (518)
                      ..++|+||++|.+.+...+...+++++|||||+||+|+++..              ...+|.|+..|+|.++.|+++++.
T Consensus       289 ~~~~r~li~eG~l~~~~~~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~~v~~~~~~  368 (418)
T 3t06_A          289 DLTTRKMIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVATD  368 (418)
T ss_dssp             CGGGSCEEEEEEEEECCBTTBCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECSSC
T ss_pred             ccccceeEEeceEEEEeCCCCeEEEEEEecCCEEEEEEEcCCceEEeecccccccCCCcccccCCceechhceecccccc
Confidence            556799999999988765555679999999999999997631              123678889999999999987643

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A

Probab=100.00  E-value=1.9e-46  Score=375.51  Aligned_cols=270  Identities=19%  Similarity=0.311  Sum_probs=227.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhC-CCCC-CCCchH
Q psy824          231 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLD-WDAP-YKSCIG  308 (518)
Q Consensus       231 R~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~-~~~~-~~~~ig  308 (518)
                      ++++|+||++||++||++|+.+.+.|+.||....+++++.++..||+||++|+.+|+.||.+|+.+.. +... ....||
T Consensus         4 y~~vi~Eli~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~~~~ig   83 (354)
T 1dbh_A            4 YYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGSPHPLVG   83 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCTTSSSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhccccCCccchHH
Confidence            56899999999999999999999999999986556899999999999999999999999999998873 3222 237899


Q ss_pred             HHHHhhhc--CcCCchhHHHHHHHHHhcchh--hHHHH--HHhhcchHHHHHHHHH-HHhhccccccCccCCCcchhhHH
Q psy824          309 ETFLKHKS--GFHPHLGVTVRHAIKIHCSDK--DKWLL--FCCRSLEDKARWLAAF-QQERALVEQDREDGLEFAPAAKE  381 (518)
Q Consensus       309 ~~f~~~~~--~~~~~~~~~~~~~y~~y~~~~--~~a~~--~~~~~~~~~~~fl~~~-~~~~~~~~~~~l~~~L~~PvQRl  381 (518)
                      ++|+++.+  .|+.         |..||.||  +.+..  ..+.+++.|..|++.+ +..+.+.+.. |.+||++||||+
T Consensus        84 ~~f~~~~~~~~f~~---------Y~~Y~~n~~~~~a~~~l~~~~~~~~f~~~l~~~~~~~~~~~~~~-L~~~Li~PvQRi  153 (354)
T 1dbh_A           84 SCFEDLAEELAFDP---------YESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYV-LPRLLLAPVYHC  153 (354)
T ss_dssp             HHHHHHHHTTTTHH---------HHHHHHHHTSTTHHHHHHHHHHSTTHHHHHHHHCTTHHHHHHHT-HHHHTTHHHHHH
T ss_pred             HHHHHHhHHhhhhH---------HHHHHHhccchHHHHHHHHHhcChHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHh
Confidence            99999998  6766         99999999  43222  2235678888888763 3334455554 999999999999


Q ss_pred             HHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHH----------------------HHHhHHHHHHHHHHHHhc
Q psy824          382 LARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINE----------------------RKRRMESLEKLAAWQQRV  439 (518)
Q Consensus       382 ~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~----------------------~~~~~e~~~~l~~~~~~i  439 (518)
                      +||+|||++|+|+|| +|+||..|+.|++.++.++..+|+                      ++++.++.+++.++++.|
T Consensus       154 ~rY~LLL~~llk~t~-~~~d~~~L~~Al~~~~~v~~~in~~~~~~~~~r~~~e~~~~~~~ne~~r~~e~~~~l~~lq~~i  232 (354)
T 1dbh_A          154 LHYFELLKQLEEKSE-DQEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNI  232 (354)
T ss_dssp             HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHTC-------------CTHHHHHHHTTE
T ss_pred             chHHHHHHHHHhcCC-CCccHHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence            999999999999998 599999999999999999998876                      777888889999999999


Q ss_pred             ccCCCccccccccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccC-------CCCceEEEEEeecCCeeEEEcCC
Q psy824          440 EGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDIL-------KRNTHVYKARLNIDTSQIINLPD  512 (518)
Q Consensus       440 ~~~~~~~l~~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~-------~~~~~~~k~~i~l~~~~v~~~~d  512 (518)
                      .||++.+|..++|+||++|.+.+.+   ..+++++|||||+||+||++..       ++.+|.++++|+|.++.|.+++|
T Consensus       233 ~~~~~~~l~~~~r~li~eG~l~~~g---~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~d  309 (354)
T 1dbh_A          233 DGWEGKDIGQCCNEFIMEGTLTRVG---AKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDD  309 (354)
T ss_dssp             ESCCSSCGGGTCCCEEEEEEEEETT---CSSCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCC
T ss_pred             cCCCCcccccccceEEEEeeEEEEe---cCceEEEEEeCCEEEEEecCCCCCCCCCCCCcceeEEEEEeccceEEEeCCc
Confidence            9999888999999999999998873   3568999999999999998632       34689999999999999999988


Q ss_pred             CC
Q psy824          513 GK  514 (518)
Q Consensus       513 ~~  514 (518)
                      ++
T Consensus       310 ~~  311 (354)
T 1dbh_A          310 TN  311 (354)
T ss_dssp             SS
T ss_pred             cc
Confidence            75

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A

Probab=100.00  E-value=6.5e-46  Score=375.21  Aligned_cols=281  Identities=19%  Similarity=0.235  Sum_probs=239.3

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCC
Q psy824          223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAP  302 (518)
Q Consensus       223 ~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~  302 (518)
                      .+.+++.+|+++|+||++||++||++|+.+.+.|+.||. ..+.+++.++..||+||++|+.+|+.||..|+.+...+++
T Consensus        20 ~l~~~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~-~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~   98 (377)
T 3p6a_A           20 SLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMA-ECLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQESGY   98 (377)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HHTSSCHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHhccCC
Confidence            456789999999999999999999999999999999997 4688999999999999999999999999999988743344


Q ss_pred             CCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHH---HhhcchHHHHHHHHHHHhhccccccCccCCCcchhh
Q psy824          303 YKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLF---CCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAA  379 (518)
Q Consensus       303 ~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~---~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQ  379 (518)
                      ....||++|+++.+.+.   ...+..+|..||.||+.+...   +.++++.|..|++.++..+.+.+.. |.+||++|||
T Consensus        99 ~~~~ig~~fl~~~~~~~---~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~-L~~~Li~PvQ  174 (377)
T 3p6a_A           99 LIEEIGDVLLARFDGAE---GSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQ-LKDMIPTEMQ  174 (377)
T ss_dssp             CCCCCHHHHHHHHSHHH---HHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHHTSGGGTTCC-HHHHTTHHHH
T ss_pred             CCCcHHHHHHHHhcchh---hHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHhCcccCCCC-HHHHHHHHHH
Confidence            56799999999977421   011234599999999998654   3567889999999998877777765 9999999999


Q ss_pred             HHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc-------------CCCcc
Q psy824          380 KELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEG-------------WEGED  446 (518)
Q Consensus       380 Rl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~-------------~~~~~  446 (518)
                      |++||+|||++|+|+||. |+|+..|+.|++.++.++..+|+.+++.|+..++.+++++|.+             |.+  
T Consensus       175 Ri~rY~LLL~~llk~t~~-~~d~~~l~~A~~~i~~v~~~in~~~~~~e~~~~l~~iq~~l~~~~~~~~~~~~~~~~~~--  251 (377)
T 3p6a_A          175 RLTKYPLLLQSIGQNTEE-PTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKN--  251 (377)
T ss_dssp             HHHHHHHHHHHHHHTCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECHHHHHCCCGGGSSSTT--
T ss_pred             HhhhHHHHHHHHHhhCCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccchhhhhcc--
Confidence            999999999999999996 8999999999999999999999999999999999999999963             433  


Q ss_pred             ccccccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccCCCCceEEEE-----------------EeecCCeeEEE
Q psy824          447 LIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKA-----------------RLNIDTSQIIN  509 (518)
Q Consensus       447 l~~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~-----------------~i~l~~~~v~~  509 (518)
                      +..++|+||++|.+.+...+.+.+++++|||||+||+|+++   +.+|.++.                 .|+|..+.|++
T Consensus       252 l~~~~r~li~eG~l~~~~~~~~~~~~~~fLF~d~Ll~~k~k---~~k~~~k~~~~~~~~~~~~k~~~~~~i~l~~~~v~e  328 (377)
T 3p6a_A          252 LDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQ---DERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTRE  328 (377)
T ss_dssp             CCCTTSCEEEEEEEEEESSSSCEEEEEEEEESSEEEEEEEE---TTEEECCCCCCC---------CSCSEEEGGGEEEEE
T ss_pred             cccccceEEEECCcEEEecCCCeEEEEEEeeCCEEEEEEEc---CceeEEeecccccccCccccCCCCCeEechhhhccc
Confidence            33357999999999777655556799999999999999987   45566654                 69999999999


Q ss_pred             cCCCC
Q psy824          510 LPDGK  514 (518)
Q Consensus       510 ~~d~~  514 (518)
                      +.+++
T Consensus       329 ~~~~~  333 (377)
T 3p6a_A          329 VATDH  333 (377)
T ss_dssp             CTTCT
T ss_pred             ccccc
Confidence            76654

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A

Probab=100.00  E-value=6.5e-45  Score=380.91  Aligned_cols=282  Identities=18%  Similarity=0.232  Sum_probs=236.3

Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCC
Q psy824          222 ISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDA  301 (518)
Q Consensus       222 ~~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~  301 (518)
                      ..+..++.+|+++|+||++||++||++|+.+.+.|+.||. ..+.++..++..||+||++|+.+|+.||..|+++...+.
T Consensus       172 ~~l~~~e~kRq~vi~ELi~TE~~YV~~L~~l~~~y~~pl~-~~~~l~~~~~~~IF~nie~I~~~h~~fL~~L~~~~~~~~  250 (536)
T 3odw_A          172 HSLPKSQVKRQEVISELLVTEAAHVRMLRVLHDLFFQPMA-ECLFFPLEELQNIFPSLDELIEVHSLFLDRLMKRRQESG  250 (536)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HTTSSCHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             hhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3466789999999999999999999999999999999998 568899999999999999999999999999999874334


Q ss_pred             CCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHH---HhhcchHHHHHHHHHHHhhccccccCccCCCcchh
Q psy824          302 PYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLF---CCRSLEDKARWLAAFQQERALVEQDREDGLEFAPA  378 (518)
Q Consensus       302 ~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~---~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~Pv  378 (518)
                      +....||++|+++.+.+.   ...+..+|..||.||+.++..   ++++++.|..|++.|+..+.+.+.. |.+||++||
T Consensus       251 ~~~~~Igdifl~~~~~~~---~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~~~~~~~l~-L~s~Li~Pv  326 (536)
T 3odw_A          251 YLIEEIGDVLLARFDGAE---GSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAESRPRCRRLQ-LKDMIPTEM  326 (536)
T ss_dssp             --CCCCHHHHHHHHSHHH---HHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHTTSGGGTTCC-HHHHTTHHH
T ss_pred             cccccHHHHHHHHcchhh---hHHHHHHHHHHHhhHHHHHHHHHHHHhhCHHHHHHHHHHhhCcccccCC-HHHHHHHHH
Confidence            456899999999977421   011234599999999998654   4667888999999998877777765 999999999


Q ss_pred             hHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc-------------CCCc
Q psy824          379 AKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEG-------------WEGE  445 (518)
Q Consensus       379 QRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~-------------~~~~  445 (518)
                      |||+||+|||++|+|+|+. |+||..|++|++.++.++..+|+.+++.|+..++.+++++|.+             |.+ 
T Consensus       327 QRi~rY~LLL~~LlK~T~~-~~d~~~L~~Al~~i~~v~~~iNe~~r~~e~~~kL~~iq~~L~~~~~~~~~~~~i~~~~~-  404 (536)
T 3odw_A          327 QRLTKYPLLLQSIGQNTEE-PTEREKVELAAECCREILHHVNQAVRDMEDLLRLKDYQRRLDLSHLRQSSDPMLSEFKN-  404 (536)
T ss_dssp             HHHHHHHHHHHHHHTTCCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECTTTTTC---CCTTSSS-
T ss_pred             HHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhcc-
Confidence            9999999999999999986 9999999999999999999999999999999999999999964             322 


Q ss_pred             cccccccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccCCCCceEEEE-----------------EeecCCeeEE
Q psy824          446 DLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKA-----------------RLNIDTSQII  508 (518)
Q Consensus       446 ~l~~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~-----------------~i~l~~~~v~  508 (518)
                       +..++|+||++|.|.+...+...+++++|||||+||+|+++   +.+|+++.                 .|+|.++.|+
T Consensus       405 -ldl~~R~LI~eG~l~~~~~~~k~~~r~~fLF~D~LL~~k~k---~~ky~~k~~~~~~~~~~d~k~~~~~~i~L~~l~v~  480 (536)
T 3odw_A          405 -LDITKKKLVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQ---DERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTR  480 (536)
T ss_dssp             -CCCTTSCEEEEEEEEEESCC---CEEEEEEESSEEEEEEEE---TTEEECCCC------------CCCSEEEGGGEEEE
T ss_pred             -cccccceeeeecceEEEecCCCeeEEEEEEcCCEEEEEEEc---CCeEEEeecccccccccccccccCceeecccceee
Confidence             33357999999999887655556799999999999999987   34555543                 5999999999


Q ss_pred             EcCCCC
Q psy824          509 NLPDGK  514 (518)
Q Consensus       509 ~~~d~~  514 (518)
                      ++++..
T Consensus       481 e~~~d~  486 (536)
T 3odw_A          481 EVATDH  486 (536)
T ss_dssp             ECTTCT
T ss_pred             cccccC
Confidence            976543

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.2e-45  Score=376.92  Aligned_cols=273  Identities=19%  Similarity=0.258  Sum_probs=232.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Q psy824          225 LSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRR--------RNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETK  296 (518)
Q Consensus       225 ~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~--------~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~  296 (518)
                      ...+.+|+.|++||++||+.||++|+.+.+.|+.||..        ..+.++..++..||+||++|+.+|+.||..|+.+
T Consensus        17 ~e~~~kr~~ii~ELl~TE~~Yv~~L~~l~~~f~~pl~~~l~~~~~~~~~~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~   96 (434)
T 3mpx_A           17 QGGQSRALVIAQELLSSEKAYVEMLQHLNLDFHGAVMRALDDMDHEGRDTLAREELRQGLSELPAIHDLHQGILEELEER   96 (434)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999863        1357788999999999999999999999999999


Q ss_pred             hCCCCCCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHH---HhhcchHHHHHHHHHHHhhccccccCccCC
Q psy824          297 LDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLF---CCRSLEDKARWLAAFQQERALVEQDREDGL  373 (518)
Q Consensus       297 ~~~~~~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~---~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~  373 (518)
                      ...+. ....||++|+++.+.|+.         |..||.||+.+...   ++++++.|..|++.++..+.+.+.. |.+|
T Consensus        97 ~~~~~-~~~~ig~ifl~~~~~~~~---------Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~-L~s~  165 (434)
T 3mpx_A           97 LSNWE-SQQKVADVFLAREQGFDH---------HATHILQFDRYLGLLSENCLHSPRLAAAVREFEQSVQGGSQT-AKHR  165 (434)
T ss_dssp             HHTTT-TCCCCTHHHHTTTTTHHH---------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------C-HHHH
T ss_pred             HHhcc-CcccHHHHHHHhhHHHHH---------HHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHcCcccCCCC-HHHH
Confidence            84322 358999999999998866         99999999998654   4567899999999998766666655 9999


Q ss_pred             CcchhhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccccc
Q psy824          374 EFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQ  453 (518)
Q Consensus       374 L~~PvQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~r~  453 (518)
                      |++||||++||+|||++|+|+|+++|+||..|+.|++.++.++..+|+.+++.|+.+++.+++..|.|+  .+|..++|.
T Consensus       166 Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~iN~~~~~~e~~~~l~~l~~~i~~~--~~l~~~~r~  243 (434)
T 3mpx_A          166 LLRVVQRLFQYQVLLTDYLNNLCPDSAEYDNTQGALSLISKVTDRANDSMEQGENLQKLVHIEHSVRGQ--GDLLQPGRE  243 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHEETC--CCCCCTTCC
T ss_pred             HhhhHHhhhHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cccccCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999987  468999999


Q ss_pred             eEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCC
Q psy824          454 LIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG  513 (518)
Q Consensus       454 ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~  513 (518)
                      ||++|.+.++..+ ..+++++|||||+||+||++.  +.+|.+++.|+|.++.|.+..++
T Consensus       244 li~~g~l~~~~~~-~~~~r~~fLF~d~Ll~~k~~~--~~~y~~k~~i~L~~l~v~~~~~~  300 (434)
T 3mpx_A          244 FLKEGTLMKVTGK-NRRPRHLFLMNDVLLYTYPQK--DGKYRLKNTLAVANMKVSRPVME  300 (434)
T ss_dssp             EEECCEEEEEETT-EEEEEEEEEESSEEEEEEECT--TSCEEEEEEEEC-----CCCCCT
T ss_pred             eEecceEEEEeCC-CceEEEEEEECCEEEEEEecC--CCeEEEEEEEEcCCcEEEecCCC
Confidence            9999999888653 467899999999999999763  56899999999999999876654

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A

Probab=100.00  E-value=1.2e-44  Score=366.51  Aligned_cols=283  Identities=18%  Similarity=0.244  Sum_probs=235.4

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhh-CC-C
Q psy824          223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKL-DW-D  300 (518)
Q Consensus       223 ~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~-~~-~  300 (518)
                      .+.+++.+|+++|+||++||++||++|+.+.+.|+.||. ..+.+++.++..||+||++|+.+| .||..|++++ .+ .
T Consensus        17 ~l~~~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~f~~~l~-~~~~l~~~~~~~iF~ni~~I~~~h-~fL~~l~~~~~~~~~   94 (385)
T 1txd_A           17 GLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFYQRVS-REGILSPSELRKIFSNLEDILQLH-IGLNEQMKAVRKRNE   94 (385)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HHTCSCHHHHHHHHTTHHHHHHHH-HHHHHHHHHHHTTCT
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHhcCHHHHHHHH-HHHHHHHHHHHHhhc
Confidence            456778999999999999999999999999999999997 467899999999999999999999 9999999975 22 2


Q ss_pred             CCCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHH---HhhcchHHHHHHHHHHHhhccccccCccCCCcch
Q psy824          301 APYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLF---CCRSLEDKARWLAAFQQERALVEQDREDGLEFAP  377 (518)
Q Consensus       301 ~~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~---~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~P  377 (518)
                      .+....||++|+++.+.+.   ...+..+|..||.||+.+...   ++++++.|..|++.|+..+.+.+.. |.+||++|
T Consensus        95 ~~~~~~ig~~fl~~~~~~~---~~~f~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~fl~~~~~~~~~~~l~-L~~~Li~P  170 (385)
T 1txd_A           95 TSVIDQIGEDLLTWFSGPG---EEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQ-LKDIIPTQ  170 (385)
T ss_dssp             TCCCCCCHHHHHHHHSTHH---HHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHHHSGGGTTCC-HHHHTTHH
T ss_pred             CCCcccHHHHHHHHccchh---HHHHHHHHHHHHHchHHHHHHHHHHHhcCHHHHHHHHHHHhCccccCCC-hHHHhhhH
Confidence            3346789999999975320   011233599999999998654   4567889999999998877777665 99999999


Q ss_pred             hhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccC--C---C------cc
Q psy824          378 AAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGW--E---G------ED  446 (518)
Q Consensus       378 vQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~--~---~------~~  446 (518)
                      |||++||+|||++|+|+|+.+ +|+..|++|++.++.++..+|+.+++.|+..++.+++++|.+.  .   .      .+
T Consensus       171 vQRi~rY~LLL~~llk~t~~~-~d~~~l~~Al~~i~~v~~~iN~~~~~~e~~~~l~~i~~~l~~~~~~~~~~p~~~~~~~  249 (385)
T 1txd_A          171 MQRLTKYPLLLDNIAKYTEWP-TEREKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDTSSLKLSEYPNVEELRN  249 (385)
T ss_dssp             HHHHHHHHHHHHHHHHTCCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCC-------CHHHHT
T ss_pred             HhHhhhHHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhcccccccchhhhhh
Confidence            999999999999999999976 8999999999999999999999999999999999999999741  1   0      12


Q ss_pred             ccccccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccC--------------CCCceEEEEEeecCCeeEEEcCC
Q psy824          447 LIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDIL--------------KRNTHVYKARLNIDTSQIINLPD  512 (518)
Q Consensus       447 l~~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~--------------~~~~~~~k~~i~l~~~~v~~~~d  512 (518)
                      +..++|+||++|.+.+...+...+++++|||||+||+|+++..              ...+|.+++.|+|+.+.|.++++
T Consensus       250 l~~~~R~li~eG~l~~~~~~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~  329 (385)
T 1txd_A          250 LDLTKRKMIHEGPLVWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVAT  329 (385)
T ss_dssp             CCGGGSCEEEEEEEEEESSSSCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEECCC
T ss_pred             cccccceEEEECcEEEEcCCCCeEEEEEEecCCeeEEEEecCCeeEEeeccccccccCCCCcCCCCceeccccccccccc
Confidence            4456799999999987654445679999999999999998631              12345678899999999998754

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1

Probab=100.00  E-value=4.3e-43  Score=354.08  Aligned_cols=276  Identities=20%  Similarity=0.287  Sum_probs=227.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhC-CCCC---
Q psy824          227 NDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLD-WDAP---  302 (518)
Q Consensus       227 ~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~-~~~~---  302 (518)
                      .+.||+++|+||++||++||++|+.+.+.|+.||. ..+.+++.++..||+||++|+.+|+.||..|+.+.. |+..   
T Consensus         8 ~~~kr~~vi~Eli~TE~~Yv~~L~~l~~~y~~pl~-~~~~l~~~~~~~iF~ni~~I~~~h~~fl~~L~~~~~~~~~~~~~   86 (377)
T 1foe_A            8 DADKLRKVICELLETERTYVKDLNCLMERYLKPLQ-KETFLTQDELDVLFGNLTEMVEFQVEFLKTLEDGVRLVPDLEKL   86 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-TSSSSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSSCGGGC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCcchhh
Confidence            57899999999999999999999999999999998 567899999999999999999999999999999885 3221   


Q ss_pred             --------CCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHH--hhcchHHHHHHHHHHHhhccccccCccC
Q psy824          303 --------YKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFC--CRSLEDKARWLAAFQQERALVEQDREDG  372 (518)
Q Consensus       303 --------~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~--~~~~~~~~~fl~~~~~~~~~~~~~~l~~  372 (518)
                              ....||++|+++.+.|+.         |..||.||+.+...+  +++++.|..|++.++... +.+. +|.+
T Consensus        87 ~~~~~~~~~~~~ig~~f~~~~~~f~~---------Y~~Y~~n~~~a~~~l~~~~~~~~f~~fl~~~~~~~-~~~l-~L~s  155 (377)
T 1foe_A           87 EKVDQFKKVLFSLGGSFLYYADRFKL---------YSAFCASHTKVPKVLVKAKTDTAFKAFLDAQNPRQ-QHSS-TLES  155 (377)
T ss_dssp             CSGGGGHHHHHHHHHHHHHHTTGGGG---------HHHHHHHTTTHHHHHTTTTTCHHHHHHHHHHCTTC-CGGG-SHHH
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHH---------HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHhhcc-ccCc-CHHH
Confidence                    124699999999999987         999999999886544  456788999999876532 3344 4999


Q ss_pred             CCcchhhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHhcccCCCc-ccccc
Q psy824          373 LEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAA-WQQRVEGWEGE-DLIET  450 (518)
Q Consensus       373 ~L~~PvQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~-~~~~i~~~~~~-~l~~~  450 (518)
                      ||++||||++||+|||++|+|+||.+|+|+..|+.|++.++.++..+|+.++..|+..++.+ +...+.++... .... 
T Consensus       156 ~Li~PvQRi~rY~LLL~~llk~t~~~~~d~~~l~~Al~~~~~v~~~iNe~~r~~e~~~~~~~~l~~~~~~~~~~~~~~~-  234 (377)
T 1foe_A          156 YLIKPIQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHINEMQKIHEEFGAVFDQLIAEQTGEKKEVADLS-  234 (377)
T ss_dssp             HTTHHHHHHTTHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSCSSCCCC-
T ss_pred             HhccchhhhccHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC-
Confidence            99999999999999999999999999999999999999999999999999999999877643 33444443221 1223 


Q ss_pred             ccceEeeeeEEEEec----C--cccceEEEEEeCCeEEEEeeccC----------------CCCceEEEEEeecCCeeEE
Q psy824          451 SSQLIHQGEVIRVTS----G--MWTNTITLFLFDHQLVYCKRDIL----------------KRNTHVYKARLNIDTSQII  508 (518)
Q Consensus       451 ~r~ll~~g~l~~~~~----~--~~~~~~~~fLF~d~ll~~k~~~~----------------~~~~~~~k~~i~l~~~~v~  508 (518)
                      .+++|++|.++....    +  +..+++++|||+|+||+|++...                .+..|.|++.|||+.+.|.
T Consensus       235 ~g~ll~~~~~~~~~~~~~~~~~~k~~~~~~fLF~d~lll~~k~~~~~k~~~~~~~~~s~~~~~~~y~~k~~i~l~~~~v~  314 (377)
T 1foe_A          235 MGDLLLHTSVIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVR  314 (377)
T ss_dssp             GGGEEEEEEEEESSCCHHHHTTCSSCEEEEEEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEEEE
T ss_pred             ccceeeecceeeccCchhhccccccceEEEEEcCCeEEEEeccccccccccccccccccccCCCceeEeeeccccceEEE
Confidence            367999999876632    1  23468999999999888755321                1247999999999999999


Q ss_pred             EcCCCCC
Q psy824          509 NLPDGKG  515 (518)
Q Consensus       509 ~~~d~~~  515 (518)
                      +++|++.
T Consensus       315 ~~~~~~~  321 (377)
T 1foe_A          315 ALPSADA  321 (377)
T ss_dssp             CCCCTTT
T ss_pred             ecCCCcc
Confidence            9998764

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=100.00  E-value=1.2e-43  Score=376.96  Aligned_cols=269  Identities=22%  Similarity=0.294  Sum_probs=239.3

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCCCC
Q psy824          225 LSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYK  304 (518)
Q Consensus       225 ~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~  304 (518)
                      .+.++||+.+|+||++||++||++|+.+.+.|+.||+   ..+++.++..||+||++|+.+|+.||..|+.+...+.  .
T Consensus       192 ~~~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~L~---~~l~~~~~~~iF~ni~~I~~~h~~fL~~L~~~~~~~~--~  266 (587)
T 3ky9_A          192 MTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFLKPLQ---RFLKPQDIEIIFINIEDLLRVHTHFLKEMKEALGTPG--A  266 (587)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH---TTSCTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHSST--T
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCHHHHHHHHhcHHHHHHHHHHHHHHHHHHHhccC--c
Confidence            4568999999999999999999999999999999997   3888999999999999999999999999999985332  5


Q ss_pred             CchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHH---HHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHH
Q psy824          305 SCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL---FCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKE  381 (518)
Q Consensus       305 ~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~---~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl  381 (518)
                      ..||++|+++.+.|+.         |..||.||+.+..   .+.+.++.|..|++.++..+.+.+.. |.+||++||||+
T Consensus       267 ~~ig~if~~~~~~f~~---------Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~~~~~~~~l~-L~s~Li~PvQRi  336 (587)
T 3ky9_A          267 ANLYQVFIKYKERFLV---------YGRYCSQVESASKHLDRVAAAREDVQMKLEECSQRANNGRFT-LRDLLMVPMQRV  336 (587)
T ss_dssp             CSHHHHHHHTTTGGGH---------HHHHHHHHHHHHHHHHHHHHTCHHHHTTTTHHHHHHHSSSCC-HHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhcch---------HHHHHhChHHHHHHHHHHHhcCHHHHHHHHHHHhccccCCCC-HHHHHhHHHHHH
Confidence            8899999999998876         9999999999865   34567788999999998877776665 999999999999


Q ss_pred             HHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccccceEeeeeEE
Q psy824          382 LARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVI  461 (518)
Q Consensus       382 ~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~r~ll~~g~l~  461 (518)
                      +||+|||++|+|+|| +|+||..|+.|++.++.++..+|+.+++.|+..++.+++++|.++++ +|..++| ++++|.+.
T Consensus       337 ~rY~LLL~~Llk~T~-~~~d~~~L~~Al~~i~~v~~~iNe~~r~~e~~~~l~~lq~~i~~~~~-~l~~~gr-ll~~G~l~  413 (587)
T 3ky9_A          337 LKYHLLLQELVKHTQ-EAMEKENLRLALDAMRDLAQCVNEVKRDNETLRQITNFQLSIENLDQ-SLAHYGR-PKIDGELK  413 (587)
T ss_dssp             TTHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEETCCS-CGGGGCC-EEEEEEEE
T ss_pred             HHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc-chhhcCc-eEEEeeEE
Confidence            999999999999998 79999999999999999999999999999999999999999999864 5777755 99999998


Q ss_pred             EEecC-cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824          462 RVTSG-MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       462 ~~~~~-~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      +.... +..+++++|||||+||+||++   +.+|.++..|+|..+.|.+.++++
T Consensus       414 ~~~~~~~~~~~r~~fLF~d~Ll~~k~~---~~~y~~k~~i~L~~~~v~~~~~~~  464 (587)
T 3ky9_A          414 ITSVERRSKMDRYAFLLDKALLICKRR---GDSYDLKDFVNLHSFQVRDDSSGD  464 (587)
T ss_dssp             EECSSCCSCEEEEEEEETTEEEEEEEE---TTEEEEEEEEEGGGEEEEEC----
T ss_pred             EEeccCCCcceEEEEEECCEEEEEEec---CCEEEeeeeechhhceeeecCCCC
Confidence            87543 345799999999999999987   678999999999999999998875

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A

Probab=100.00  E-value=6.4e-42  Score=341.63  Aligned_cols=259  Identities=23%  Similarity=0.339  Sum_probs=215.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCH---HHHHHHhcCHHHHHHHHH-HHHHHHHHhhC
Q psy824          225 LSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRN--DMFSP---EQIQTIFGNLEDILAFQS-SFLEDLETKLD  298 (518)
Q Consensus       225 ~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~--~~l~~---~~~~~lF~ni~~i~~~h~-~~l~~L~~~~~  298 (518)
                      .+.+.+|+.+|+||++||++||++|+.+.+.|+.||....  +.++.   .++..||+||++|+.+|. .||..|+.+..
T Consensus         6 ~~~~~kR~~vi~ELl~TE~~Yv~~L~~l~~~y~~pl~~~~~~~~~p~~~~~~~~~iF~ni~~I~~~h~~~fl~~Le~~~~   85 (353)
T 1kz7_A            6 ESLAILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFLRELESCID   85 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGCTTTTTTSCHHHHHTHHHHHTTHHHHHHHHHHTHHHHHHTTTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChhhhhhHHHHHhCHHHHHHHHHHHHHHHHHHHhc
Confidence            3568999999999999999999999999999999997422  25664   589999999999999997 79999999875


Q ss_pred             CCCCCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcchh
Q psy824          299 WDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPA  378 (518)
Q Consensus       299 ~~~~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~Pv  378 (518)
                      .    ...||++|+++.+.|+.         |..||.||+.+...+.....  ..|++.|+... +.+. +|.+||++||
T Consensus        86 ~----~~~ig~~fl~~~~~f~~---------Y~~Y~~n~~~a~~~l~~~~~--~~f~~~~~~~~-~~~l-~L~~~Li~Pv  148 (353)
T 1kz7_A           86 C----PELVGRCFLERMEEFQI---------YEKYCQNKPRSESLWRQCSD--CPFFQECQKKL-DHKL-SLDSYLLKPV  148 (353)
T ss_dssp             C----GGGHHHHHHTTTTGGGH---------HHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHH-TCSS-CHHHHHTHHH
T ss_pred             C----HHHHHHHHHHhhHHHHH---------HHHHHhChHHHHHHHHHhhc--chHHHHHHHhc-CCCC-CHHHHHHHHH
Confidence            2    36899999999998866         99999999998764433222  26788777642 3344 4999999999


Q ss_pred             hHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccccceEeee
Q psy824          379 AKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQG  458 (518)
Q Consensus       379 QRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~r~ll~~g  458 (518)
                      ||++||+|||++|+|+|| +|+|+..|++|++.++.++..+|+.++.           ..|.||++ +|... |+||++|
T Consensus       149 QRi~rY~LLL~~llk~t~-~~~d~~~L~~Al~~i~~v~~~iN~~~~~-----------~~i~~~~~-~L~~~-g~ll~~g  214 (353)
T 1kz7_A          149 QRITKYQLLLKEMLKYSK-HCEGAEDLQEALSSILGILKAVNDSMHL-----------IAITGYDG-NLGDL-GKLLMQG  214 (353)
T ss_dssp             HHHHHHHHHHHHHHHTCT-TSTTHHHHHHHHHHHHHHHHHHHHHHHH-----------TTEESCCS-CGGGG-CCEEEEE
T ss_pred             HHHHHHHHHHHHHHhccC-CCccHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhCCCC-ChhHh-hhhheec
Confidence            999999999999999999 5899999999999999999999998753           36888876 46655 6799999


Q ss_pred             eEEEEecCc------------ccceEEEEEeCCeEEEEeeccC------CCCceEEEEEeecCCeeEEEcCCCC
Q psy824          459 EVIRVTSGM------------WTNTITLFLFDHQLVYCKRDIL------KRNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       459 ~l~~~~~~~------------~~~~~~~fLF~d~ll~~k~~~~------~~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      .+.+....+            +.+++++|||||+||+||++..      +...|.|+.+|+|+++.|.+..+|+
T Consensus       215 ~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~~y~~k~~i~l~~~~v~e~~~~~  288 (353)
T 1kz7_A          215 SFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVKGD  288 (353)
T ss_dssp             EEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECCBTTB
T ss_pred             ceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEeccccccCCCCCCeEEEEEEeEcccceeeEcCCCC
Confidence            998764321            2468999999999999998742      2368999999999999999887664

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A

Probab=100.00  E-value=8.2e-41  Score=328.27  Aligned_cols=255  Identities=21%  Similarity=0.313  Sum_probs=209.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCH---HHHHHHhcCHHHHHHHHHH-HHHHHHHhhCCCC
Q psy824          226 SNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSP---EQIQTIFGNLEDILAFQSS-FLEDLETKLDWDA  301 (518)
Q Consensus       226 ~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~---~~~~~lF~ni~~i~~~h~~-~l~~L~~~~~~~~  301 (518)
                      +++.+|+.+++||++||++||++|+.+.+.|+.||....+.+++   .++..||+|+++|+.+|+. ||..|+.+...  
T Consensus         5 k~~~kR~~vi~El~~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~~~~iF~ni~~i~~~h~~~fl~~L~~~~~~--   82 (311)
T 1nty_A            5 KSARRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYEQL--   82 (311)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCTTTTTCHHHHHTTHHHHHHHHHHTHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhhHHHhhcCHHHHHHHHHHHHHHHHHHHHCC--
Confidence            35689999999999999999999999999999999754444553   4789999999999999996 99999998642  


Q ss_pred             CCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHH
Q psy824          302 PYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKE  381 (518)
Q Consensus       302 ~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl  381 (518)
                        ...||++|+++.+.|+.         |..||+||+.+...+...   ...|++.++..... + .+|.+||++||||+
T Consensus        83 --~~~ig~~f~~~~~~~~~---------Y~~Y~~n~~~a~~~l~~~---~~~f~~~~~~~~~~-~-l~L~~~Li~PvQRi  146 (311)
T 1nty_A           83 --PEDVGHCFVTWADKFQM---------YVTYCKNKPDSTQLILEH---AGSYFDEIQQRHGL-A-NSISSYLIKPVQRI  146 (311)
T ss_dssp             --GGGTHHHHHHTTTTTHH---------HHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHTC-S-SCHHHHHTHHHHHH
T ss_pred             --HHHHHHHHHHHHHHhHH---------HHHHHhCcHHHHHHHHHH---HHHHHHHHHHhccC-C-CCHHHHhhhhHHHH
Confidence              36899999999998865         999999999997665432   23677777765432 3 45999999999999


Q ss_pred             HHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccccceEeeeeEE
Q psy824          382 LARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVI  461 (518)
Q Consensus       382 ~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~r~ll~~g~l~  461 (518)
                      +||+|||++|+|+||++|+|   ++.|++.++.++.++|+.++.           ..|+|++. ++.. .|+|+++|.+.
T Consensus       147 ~rY~LLL~~llk~t~~~h~~---l~~Al~~~~~v~~~~N~~~~~-----------~~l~~~~~-~l~~-~g~li~~~~~~  210 (311)
T 1nty_A          147 TKYQLLLKELLTCCEEGKGE---IKDGLEVMLSVPKRANDAMHL-----------SMLEGFDE-NIES-QGELILQESFQ  210 (311)
T ss_dssp             HHHHHHHHHHHHTSCTTCTT---HHHHHHHHHHHHHHHHHHHHH-----------TTEESCCS-CSGG-GCCEEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCcHH---HHHHHHHHHHHHHHHHHHHHH-----------HHHhCCCC-ChHh-cCCceeeeeEE
Confidence            99999999999999998875   889999999999999997652           35777753 3444 47899999988


Q ss_pred             EEecC---cccceEEEEEeCCeEEEEeecc--CCCCceEEEEEeecCCeeEEEcCCCC
Q psy824          462 RVTSG---MWTNTITLFLFDHQLVYCKRDI--LKRNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       462 ~~~~~---~~~~~~~~fLF~d~ll~~k~~~--~~~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      +....   +..+++++|||||+||+||++.  .++.+|.+++.|+|.++.|.+..+++
T Consensus       211 ~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~y~~k~~i~l~~~~v~e~~~~~  268 (311)
T 1nty_A          211 VWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEGD  268 (311)
T ss_dssp             EECSSSSSCCEEEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEEEECCCTTC
T ss_pred             EEcCcccccccceeEEEeccCeEEEEEeeccCCCCceeEEeeeeeccceeeEEccCCC
Confidence            77432   2357999999999999999764  23468999999999999999987765

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=100.00  E-value=1.3e-40  Score=332.30  Aligned_cols=256  Identities=19%  Similarity=0.269  Sum_probs=210.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CHHHHHHHhcCHHHHHHHHHH-HHHHHHHhhCCCCCC
Q psy824          227 NDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMF--SPEQIQTIFGNLEDILAFQSS-FLEDLETKLDWDAPY  303 (518)
Q Consensus       227 ~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l--~~~~~~~lF~ni~~i~~~h~~-~l~~L~~~~~~~~~~  303 (518)
                      ...+|+.+++||++||++||++|+.+.+.|+.||... +..  ...++..||+||++|+.+|+. ||..|+.+...    
T Consensus         9 ~~~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~~~-~~p~~l~~~~~~iF~ni~~I~~~h~~~fl~~L~~~~~~----   83 (354)
T 2rgn_B            9 ALERSMYVLSELVETEKMYVDDLGQIVEGYMATMAAQ-GVPESLRGRDRIVFGNIQQIYEWHRDYFLQELQRCLKD----   83 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CCCSSSGGGHHHHHTTHHHHHHHHHHTHHHHHHHHHSC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHcC----
Confidence            4578999999999999999999999999999999743 221  135689999999999999999 99999998852    


Q ss_pred             CCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHHH
Q psy824          304 KSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELA  383 (518)
Q Consensus       304 ~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~~  383 (518)
                      ...||++|+++.+.|+.         |..||.||+.+...+....+   .|++.|... .+.+. +|.+||++||||++|
T Consensus        84 ~~~ig~~fl~~~~~f~~---------Y~~Y~~n~~~a~~~l~~~~~---~~f~~~~~~-~~~~l-~L~s~Li~PvQRi~r  149 (354)
T 2rgn_B           84 PDWLAQLFIKHERRLHM---------YVVYCQNKPKSEHVVSEFGD---SYFEELRQQ-LGHRL-QLNDLLIKPVQRIMK  149 (354)
T ss_dssp             GGGHHHHHHHTTTTTHH---------HHHHHHTSHHHHHHHTTTSH---HHHHHHHHH-HCCSS-CHHHHTTHHHHHHTS
T ss_pred             HHHHHHHHHHhHHHHHH---------HHHHHhCcHHHHHHHHHHHH---HHHHHHHHh-cCCCC-CHHHHhhhHHHHHhH
Confidence            26799999999998866         99999999999776654432   466666542 33444 499999999999999


Q ss_pred             HHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCCccccccccceEeeeeEEEE
Q psy824          384 RMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRV  463 (518)
Q Consensus       384 y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~~~l~~~~r~ll~~g~l~~~  463 (518)
                      |+|||++|+|+|+.+|+||..|+.|++.++.++..+|+.++.           ..|.+|++ .|.. .|+||++|.+.+.
T Consensus       150 Y~LLL~~llk~t~~~~~d~~~l~~Al~~i~~v~~~in~~~~~-----------~~i~~~~~-~l~~-~~~Ll~~g~~~v~  216 (354)
T 2rgn_B          150 YQLLLKDFLKYYNRAGMDTADLEQAVEVMCFVPKRCNDMMTL-----------GRLRGFEG-KLTA-QGKLLGQDTFWVT  216 (354)
T ss_dssp             HHHHHHHHHHHTSSSCSCHHHHHHHHHHHHHHHHHHHHHHHG-----------GGCBSCCS-CSTT-SCCEEEEEEEEEE
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhCChh-hhhh-hccccccceEEEE
Confidence            999999999999999999999999999999999999997652           46888876 3444 5789999998765


Q ss_pred             ecC------cccceEEEEEeCCeEEEEeeccCC-----CCceEEEEEeecCCeeEEEcCCCC
Q psy824          464 TSG------MWTNTITLFLFDHQLVYCKRDILK-----RNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       464 ~~~------~~~~~~~~fLF~d~ll~~k~~~~~-----~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      ...      ...+++++|||||+||+|+++..+     ...|.|++.|+|.++.|.+..+++
T Consensus       217 ~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~~~~  278 (354)
T 2rgn_B          217 EPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGNLQGD  278 (354)
T ss_dssp             CC-------CCCCEEEEEEESSEEEEEEECC--------CCEEEEEEEEGGGEEEEESGGGC
T ss_pred             cCCcCccccCCCceEEEEEeCCcEEEEEeccCCCCCCCCCceEEcceeeccceeeeeccCCC
Confidence            421      235799999999999999986421     247999999999999999876553

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=100.00  E-value=1.9e-41  Score=379.38  Aligned_cols=276  Identities=19%  Similarity=0.303  Sum_probs=233.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCC--C
Q psy824          225 LSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDA--P  302 (518)
Q Consensus       225 ~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~--~  302 (518)
                      ...+.+|+++|+||++||++||++|+.+.+.|+.||....+++++.++..||+||++|+.+|+.||..|+.+..++.  .
T Consensus       195 ~~~~~~~revI~ELi~TE~~YV~~L~~l~~~y~~pL~~~~~~l~~~~~~~IF~Ni~~I~~~h~~fL~~Le~~~~~~~~~~  274 (1049)
T 3ksy_A          195 TSGEQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGS  274 (1049)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHCTTTSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHCCSSS
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhccccCC
Confidence            44567788999999999999999999999999999986557899999999999999999999999999999985322  2


Q ss_pred             CCCchHHHHHhhhc--CcCCchhHHHHHHHHHhcchh--hHHHHHH--hhcchHHHHHHHH-HHHhhccccccCccCCCc
Q psy824          303 YKSCIGETFLKHKS--GFHPHLGVTVRHAIKIHCSDK--DKWLLFC--CRSLEDKARWLAA-FQQERALVEQDREDGLEF  375 (518)
Q Consensus       303 ~~~~ig~~f~~~~~--~~~~~~~~~~~~~y~~y~~~~--~~a~~~~--~~~~~~~~~fl~~-~~~~~~~~~~~~l~~~L~  375 (518)
                      ....||++|+++++  .|..         |..||.||  +.+...+  +.+++.|..|++. ++..+.+.+.. |.+||+
T Consensus       275 ~~~~IgdiFl~~~~~~~F~~---------Y~~Yc~ny~~~~a~~~l~~l~~~~~f~~fl~~~~~~~~~~~~l~-L~s~Li  344 (1049)
T 3ksy_A          275 PHPLVGSCFEDLAEELAFDP---------YESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYV-LPRLLL  344 (1049)
T ss_dssp             SSCCCHHHHHHHHHTTTTSH---------HHHHHHHHHCTTHHHHHHTTSSSTTHHHHHHHHCTTHHHHHHHT-HHHHTT
T ss_pred             chhhHHHHHHHHHHHhhhhH---------HHHHHHhhccHHHHHHHHHHhcChHHHHHHHHHHhhhhhhhcCC-hHHHHH
Confidence            24789999999976  5666         99999996  6554322  3367889999987 44444555554 999999


Q ss_pred             chhhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHH----------------------HHHhHHHHHHHH
Q psy824          376 APAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINE----------------------RKRRMESLEKLA  433 (518)
Q Consensus       376 ~PvQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~----------------------~~~~~e~~~~l~  433 (518)
                      +||||++||+|||++|+|+|| +|+||..|++|++.+++++..||+                      ++++.++..++.
T Consensus       345 kPvQRI~rY~LLL~~LlK~Tp-~~~D~~~L~~Al~~i~~v~~~VNe~~~~~~~k~r~~e~~~~~~~n~~kr~~e~~~~l~  423 (1049)
T 3ksy_A          345 APVYHCLHYFELLKQLEEKSE-DQEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMN  423 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTHHHHHHHHHHTTSTTHHHHHHHHC-------------CCSHHH
T ss_pred             HHHHHHhHHHHHHHHHHhcCC-CcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhhhhhhHHHHHHHHHHHHHHH
Confidence            999999999999999999998 669999999999999999999997                      445777888999


Q ss_pred             HHHHhcccCCCccccccccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccCC-------CCceEEEEEeecCCee
Q psy824          434 AWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILK-------RNTHVYKARLNIDTSQ  506 (518)
Q Consensus       434 ~~~~~i~~~~~~~l~~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~-------~~~~~~k~~i~l~~~~  506 (518)
                      ++++.|.||++.++..++|+||++|.+.+.+.+   +++++|||||+||+||++..+       +.+|.+++.|+|+++.
T Consensus       424 ~lq~~i~~~~~~~l~~~~r~Li~eG~l~~~~~k---~~r~~FLF~D~Ll~~K~~~~~~~~~g~~~~~y~~k~~i~L~~l~  500 (1049)
T 3ksy_A          424 EIQKNIDGWEGKDIGQCCNEFIMEGTLTRVGAK---HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQ  500 (1049)
T ss_dssp             HHHHTSSSCCSSCGGGTCSCCCCEEEEEETTCS---SCEEEEEETTEEEEEECCTTCCCCTTSCCCSCCCCCEECCSSCC
T ss_pred             HHHHHhhcCCccccccccceEEEeceEEEEccC---ceEEEEeeCCeEEEEEecCccCCCCCCCCCceEEEEEEEcCceE
Confidence            999999999998999999999999999887643   699999999999999987432       2469999999999999


Q ss_pred             EEEcCCCC
Q psy824          507 IINLPDGK  514 (518)
Q Consensus       507 v~~~~d~~  514 (518)
                      |.+++|++
T Consensus       501 V~~~~d~~  508 (1049)
T 3ksy_A          501 INDKDDTN  508 (1049)
T ss_dssp             CCCCCCSS
T ss_pred             EEECCCCc
Confidence            99999876

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=100.00  E-value=4.5e-43  Score=368.99  Aligned_cols=278  Identities=19%  Similarity=0.238  Sum_probs=0.0

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCC-
Q psy824          223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDA-  301 (518)
Q Consensus       223 ~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~-  301 (518)
                      ++++.+.+|+++|+||++||++||++|+.+.+.|+.||. ..+.++..++..||+||++|+.+|+.||.+|+.+...++ 
T Consensus        20 ~l~~~e~kR~~vi~ELi~TE~~Yv~~L~~l~~~y~~~l~-~~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~~   98 (510)
T 3jzy_A           20 TMQPIERKRQGYIHELIQTEERYMADLQLVVEVFQKRMA-ESGFLTEGEMALIFVNWKELIMSNTKLLKALRVRKKTGGE   98 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHccCHHHHHHHHHHHHHHHHHHHhccCC
Confidence            356778999999999999999999999999999999997 567899999999999999999999999999999874221 


Q ss_pred             -CCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHH---HhhcchHHHHHHHHHHHhhccccccCccCCCcch
Q psy824          302 -PYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLF---CCRSLEDKARWLAAFQQERALVEQDREDGLEFAP  377 (518)
Q Consensus       302 -~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~---~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~P  377 (518)
                       ...+.||++|+++.+.|+.         |..||.||+.+...   ++++++.|..|++.++..+.+.+.. |.+||++|
T Consensus        99 ~~~~~~ig~~f~~~~~~~~~---------Y~~Y~~~~~~a~~~l~~~~~~~~~f~~~~~~~~~~~~~~~l~-L~~~L~~P  168 (510)
T 3jzy_A           99 KMPVQMIGDILAAELSHMQA---------YIRFCSCQLNGAALLQQKTDEDTDFKEFLKKLASDPRCKGMP-LSSFLLKP  168 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCchhhHHHHHHHHhHHHHH---------HHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHhCccccCCC-HHHHhChh
Confidence             2246899999999998877         88999999988543   4556788999999998877777665 99999999


Q ss_pred             hhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCCC--cccc-------
Q psy824          378 AAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWEG--EDLI-------  448 (518)
Q Consensus       378 vQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~~--~~l~-------  448 (518)
                      |||++||+|||++|+|+|+++|+||..|++|++.++.++..+|+.+++.|+.+++.++++.|. +.+  .++.       
T Consensus       169 vQRi~rY~LLL~~llk~t~~~~~d~~~l~~A~~~i~~v~~~in~~~~~~e~~~~l~~l~~~l~-~~g~~~~l~~~~~~~~  247 (510)
T 3jzy_A          169 MQRITRYPLLIRSILENTPESHADHSSLKLALERAEELCSQVNEGVREKENSDRLEWIQAHVQ-CEGLAEQLIFNSLTNC  247 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhcCcHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCccccccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999986 222  1222       


Q ss_pred             ccccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccCC--------------CCce-EEEEEeecCCeeEEEcCCC
Q psy824          449 ETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILK--------------RNTH-VYKARLNIDTSQIINLPDG  513 (518)
Q Consensus       449 ~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~--------------~~~~-~~k~~i~l~~~~v~~~~d~  513 (518)
                      .++|+||++|.+.+...   .+++++|||||+||+|+++...              ...| .|+.+|+|+++.|.+.+|+
T Consensus       248 ~~~r~li~eG~l~~~~~---~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~~~f~~~~~~~~~v~k~~i~l~~~~v~~~~d~  324 (510)
T 3jzy_A          248 LGPRKLLHSGKLYKTKS---NKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLPTDP  324 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccceeEEeceEEEcCC---CcEEEEEcccceeEEeeecccccccCCcccccCcccccceeEEcCceehhheEEeccCCC
Confidence            35699999999987633   4599999999999999955322              1234 4589999999999998776


Q ss_pred             CC
Q psy824          514 KG  515 (518)
Q Consensus       514 ~~  515 (518)
                      +.
T Consensus       325 ~~  326 (510)
T 3jzy_A          325 SS  326 (510)
T ss_dssp             --
T ss_pred             Cc
Confidence            43

>1by1_A Protein (PIX); RHO-GTPase exchange factor, transport protein; NMR {Homo sapiens} SCOP: a.87.1.1

Probab=100.00  E-value=1.3e-36  Score=280.60  Aligned_cols=190  Identities=17%  Similarity=0.220  Sum_probs=168.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCCCCCc
Q psy824          227 NDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSC  306 (518)
Q Consensus       227 ~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~~~  306 (518)
                      .+.+|+++++||++||++||++|+.+.+.|+.||. ..+.+++.++..||+|+++|+.+|+.||.+|+.+...+. ....
T Consensus        10 ~~~~R~~vi~ELi~TE~~Yv~~L~~l~~~y~~pl~-~~~~l~~~~~~~iF~ni~~i~~~h~~fl~~L~~~~~~~~-~~~~   87 (209)
T 1by1_A           10 NKSYYNVVLQNILETENEYSKELQTVLSTYLRPLQ-TSEKLSSANISYLMGNLEEICSFQQMLVQSLEECTKLPE-AQQR   87 (209)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTSSSSSSGGGTTHHHHHHHHHHHHHHHHHHHHHHHTTC-SSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHcCCc-chhh
Confidence            45789999999999999999999999999999997 567899999999999999999999999999999984332 3579


Q ss_pred             hHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHHHHHH
Q psy824          307 IGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMS  386 (518)
Q Consensus       307 ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~~y~L  386 (518)
                      ||++|+++.+.|+        .+|..||.||+.+...+.+.++.|..|++.++. ..+ +..+|.+||++||||++||+|
T Consensus        88 ig~~f~~~~~~f~--------~~Y~~Y~~n~~~a~~~l~~~~~~f~~fl~~~~~-~~~-~~l~L~s~Li~PvQRi~rY~L  157 (209)
T 1by1_A           88 VGGCFLNLMPQMK--------TLYLTYCANHPSAVNVLTEHSEELGEFMETKGA-SSP-GILVLTTGLSKPFMRLDKYPT  157 (209)
T ss_dssp             HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHTTTHHHHTTTTCC-CSS-TTTHHHHHTTSTTTGGGTHHH
T ss_pred             HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhcC-CCC-CcCCHHHHhhHHHHHHhHHHH
Confidence            9999999998775        139999999999988777777889999887743 222 333599999999999999999


Q ss_pred             hhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy824          387 AARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMES  428 (518)
Q Consensus       387 lL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~  428 (518)
                      ||++|+|+||.+|+||..|+.|++.++.++..+|+.+++.|+
T Consensus       158 LL~~Llk~t~~~h~d~~~l~~Al~~i~~v~~~iNe~~r~~e~  199 (209)
T 1by1_A          158 LLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQEVRKRKEL  199 (209)
T ss_dssp             HHHHHHHSSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999887764

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.92  E-value=1.3e-24  Score=196.57  Aligned_cols=129  Identities=20%  Similarity=0.383  Sum_probs=108.4

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCCCCCCCCCccccCCCccccccc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISKSLKRIRPHHALRRS   84 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (518)
                      ....|+|+|||.++.++||+|++||+|.|+++.++|||.|+.+|..|+||++||+.......                  
T Consensus        10 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~------------------   71 (193)
T 1ng2_A           10 ILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDE------------------   71 (193)
T ss_dssp             CCEEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCSSCSSC------------------
T ss_pred             cCcEEEEcCCcCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCeeeEechheEEeeccccc------------------
Confidence            45689999999999999999999999999999899999999999999999888874321100                  


Q ss_pred             cCCCCCcccCCccccCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCccceeEEEEeecCCCCCCCCCCCCCCCEE
Q psy824           85 VSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVI  164 (518)
Q Consensus        85 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~eL~~~~g~~i  164 (518)
                                       .....                            .......++|+|||.++..+||+|.+||+|
T Consensus        72 -----------------~~~~~----------------------------p~~~~~~~~al~dy~a~~~~eLs~~~Gd~i  106 (193)
T 1ng2_A           72 -----------------TEDPE----------------------------PNYAGEPYVAIKAYTAVEGDEVSLLEGEAV  106 (193)
T ss_dssp             -----------------SCCCC----------------------------CCTTCEEEEESSCBCCCSTTBCCBCTTCEE
T ss_pred             -----------------cchhh----------------------------ccccceeeeeccccCCCCCCcccccCCCEE
Confidence                             00000                            001235789999999999999999999999


Q ss_pred             EEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          165 EVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       165 ~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      .|++..++|||.|+.+|+.||||.+||+.+..
T Consensus       107 ~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  138 (193)
T 1ng2_A          107 EVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ  138 (193)
T ss_dssp             EEEECCTTSEEEEEETTEEEEEEGGGEEETTS
T ss_pred             EEEEecCCCeEEEEECCCEEEEehHHeEECCC
Confidence            99999899999999999999999999999865

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.91  E-value=2.8e-24  Score=208.68  Aligned_cols=163  Identities=21%  Similarity=0.350  Sum_probs=113.3

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE-eCCeeEEEEeeeeeccCCCCCCCCCccccCCCcccccc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEAFEHLSQIIINHSISPNCDISKSLKRIRPHHALRR   83 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~-~~~~~g~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~   83 (518)
                      ...+|+|+|||.++.++||+|++||+|.|+++.++|||.|+ .+|+.|+||++||+..............+         
T Consensus       133 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~~~~~~~g---------  203 (304)
T 2eyz_A          133 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSALIGG---------  203 (304)
T ss_dssp             CCCEEEECSCCCCSCSSSCCCCTTCEEEEEECCSSSEEEEECTTSCEEEEESTTEEECCCSTTSCCCCCCC---------
T ss_pred             cceeEEEEeeecCCCCCcCcccCCCEEEEEEecCCCcEEEEeCCCceeccchhccccccCCCcccccccCC---------
Confidence            45689999999999999999999999999999999999999 68889999999998654332211000000         


Q ss_pred             ccCCCCCcccCCccccCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCccceeEEEEeecCC--CCCCCCCCCCCC
Q psy824           84 SVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHV--AMEAEELGFRAG  161 (518)
Q Consensus        84 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~eL~~~~g  161 (518)
                         ...+.. ..+.      + .+..+...         .+.  ...+.+.......+++|+|||.  +...+||+|++|
T Consensus       204 ---~~~~~~-~~~~------~-~~~p~~~~---------~p~--~~~~~p~~~~~~~~~~al~d~~~~a~~~~eL~~~~G  261 (304)
T 2eyz_A          204 ---NQEGSH-PQPL------G-GPEPGPYA---------QPS--VNTPLPNLQNGPIYARVIQKRVPNAYDKTALALEVG  261 (304)
T ss_dssp             ---SSCCSC-CCSC------S-CCCSBTTB---------CSS--SSCSSSCCSSCCCCSCCSSCBCCCTTCSSCCCBCTT
T ss_pred             ---CcCCCC-CCCC------C-CCCccccc---------ccc--cccccCCCCCCCEEEEEeeeecCCCCCCCeecccCC
Confidence               000000 0000      0 00000000         000  0001111123346789999999  779999999999


Q ss_pred             CEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccCC
Q psy824          162 DVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE  198 (518)
Q Consensus       162 ~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~  198 (518)
                      |+|.|+++.++|||.|+++|+.||||++||+.+....
T Consensus       262 d~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~  298 (304)
T 2eyz_A          262 ELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQN  298 (304)
T ss_dssp             SCCEEEEECTTSCEEEEETTEEEECCCTTSCCCSSCC
T ss_pred             CEEEEEEecCCCeEEEEECCceEEechHHEEECCCCC
Confidence            9999999999999999999999999999999887553

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.91  E-value=2e-24  Score=200.38  Aligned_cols=172  Identities=28%  Similarity=0.454  Sum_probs=107.5

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEec-CCCeeEEEeCCeeEEEEeeeeeccCCCC--CCCCC-----cc-ccCCC
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTL-DRDWWWGTRGEAFEHLSQIIINHSISPN--CDISK-----SL-KRIRP   77 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~-~~~Ww~g~~~~~~g~~p~~~v~~~~~~~--~~~~~-----~~-~~~~~   77 (518)
                      |.|+|+|||.|+.++||+|++||+|.|+++. ++|||.|+.+|+.|+||.+||+....+-  +..+.     .. .....
T Consensus         1 m~~~al~~~~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~~~w~~g~isr~~ae~lL~~~~~~   80 (217)
T 1gri_A            1 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHD   80 (217)
T ss_dssp             CEEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEECCCCSSBCTTCCHHHHHHHHHTCSST
T ss_pred             CEEEEeeccCCcCCCcCCCCCCCEEEEEeccCCCCeEeeccCCccceECCcccccccchhhcccCCHHHHHHHHhccCCC
Confidence            4699999999999999999999999999887 5799999999999999999988533210  00000     00 00000


Q ss_pred             ccc-cccccCCC---------------------------------CCcccCCccccCCCCCCCCCCCCCCCCCCCCcccC
Q psy824           78 HHA-LRRSVSQP---------------------------------LGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLS  123 (518)
Q Consensus        78 ~~~-~~~~~~~~---------------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (518)
                      ..+ +|.+.+.+                                 .++++++..+...+.+..           ......
T Consensus        81 G~fLvR~S~~~~g~~~LSv~~~~~v~h~~I~~~~~g~~~~~~~~f~sl~eLv~~~~~~~~~~~-----------~~~~l~  149 (217)
T 1gri_A           81 GAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRN-----------QQIFLR  149 (217)
T ss_dssp             TCEEEEECSSSTTCEEEEEEETTEEEEEEEEECSSSCEESSSCEESSHHHHHHHHHHSCSSSS-----------TTCCCC
T ss_pred             ceEEEEccCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEeeeEcCCHHHHHHhhhccccccc-----------cceeec
Confidence            001 11110000                                 000111111110000000           000000


Q ss_pred             CCCCccCCCCCCccceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          124 DSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                             ...........++|+|||.++.++||+|++||+|.|+++.++|||.|+.+|+.|+||++||+.+..
T Consensus       150 -------~~~~~~~~~~~~~al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~  215 (217)
T 1gri_A          150 -------DIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNR  215 (217)
T ss_dssp             -------BCCCCCCCCCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEEECC
T ss_pred             -------ccccCCCCceEEEecCCccCCCCCcCCCCCCCEEEEEEeCCCCeEEEEECCeEEEEeHHHeEECCC
Confidence                   000111245689999999999999999999999999999999999999999999999999998854

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.88  E-value=1.2e-23  Score=205.02  Aligned_cols=157  Identities=15%  Similarity=0.265  Sum_probs=52.3

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe-CCeeEEEEeeeeeccCCCCCCCCCccccCCCcccccc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEAFEHLSQIIINHSISPNCDISKSLKRIRPHHALRR   83 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~-~~~~g~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~   83 (518)
                      ....|+|+|||.++.++||+|++||+|.|+++.++|||.|++ +|+.|+||++||+........ +...... +.     
T Consensus       146 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~-~~~~~~~-~s-----  218 (308)
T 3qwy_A          146 IIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQMEFHND-RTSKGAS-QS-----  218 (308)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTSCEEEEEGGGEEEC----------------------
T ss_pred             cceeEEEeceEcCCCCCcCcCCCCCEEEEEEcCCCCeEEEEeCCCCeeEecccccccccccccC-ccccccc-cC-----
Confidence            356899999999999999999999999999999999999996 888999999999832110000 0000000 00     


Q ss_pred             ccCCCCCcccCCccccCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCC-CccceeEEEEeecCCC--CCCCCCCCCC
Q psy824           84 SVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGM-DEDFVVLAEAVWDHVA--MEAEELGFRA  160 (518)
Q Consensus        84 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~--~~~~eL~~~~  160 (518)
                          ..+..         ...  +.      +..     ++  +...+.+. .......++|+|||.+  ...+||+|++
T Consensus       219 ----s~~ss---------~s~--p~------p~s-----~p--s~~sp~p~~~~~~~~~a~alyd~~~~~~~~~ELs~~~  270 (308)
T 3qwy_A          219 ----SIGSS---------GGG--AE------RFS-----SA--STSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKK  270 (308)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----CCCCc---------ccc--cc------ccc-----cc--cccCcccccccccccccccccccccccCCcccceeCC
Confidence                00000         000  00      000     00  00000000 1112457899999954  4559999999


Q ss_pred             CCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          161 GDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       161 g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ||+|.|+++.++|||.|+++|+.||||++||+.+..
T Consensus       271 Gd~i~v~~~~~~~ww~g~~~g~~G~fP~~yv~~~~~  306 (308)
T 3qwy_A          271 GQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRFTAV  306 (308)
T ss_dssp             ------------------------------------
T ss_pred             CCEEEEEEEcCCCcEEEEECCeeEEechHHeEEecC
Confidence            999999999889999999999999999999998754

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=99.81  E-value=1.2e-24  Score=211.21  Aligned_cols=172  Identities=19%  Similarity=0.335  Sum_probs=111.5

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe-CCeeEEEEeeeeeccCCCCCCCCCccccCCCccccc
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEAFEHLSQIIINHSISPNCDISKSLKRIRPHHALR   82 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~-~~~~g~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~   82 (518)
                      ....+|+|+|||.++.++||+|++||+|.|+++.++|||.|++ +|+.|+||++||+...........+..+..      
T Consensus       123 ~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~~~~~~~~~s~~~~------  196 (303)
T 2lqn_A          123 DNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSN------  196 (303)
Confidence            3567899999999999999999999999999999999999994 788899999999864332211000000000      


Q ss_pred             cccCCCCCcccCCccccCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCccceeEEEEeecCCCCC--CCCCCCCC
Q psy824           83 RSVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAME--AEELGFRA  160 (518)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~eL~~~~  160 (518)
                           ..+..  .+..   . ...+. ...+.+...   .+. ...............+++|+|||.++.  .+||+|++
T Consensus       197 -----~~~~p--~~s~---~-~~~p~-~~~~~p~~~---~~~-~~~~~~~~~~~~~~~~~~alydy~~~~~~~~eLs~~~  260 (303)
T 2lqn_A          197 -----SYGIP--EPAH---A-YAQPQ-TTTPLPAVS---GSP-GAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEV  260 (303)
Confidence                 00000  0000   0 00000 000000000   000 000000011123456899999998655  67999999


Q ss_pred             CCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          161 GDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       161 g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ||+|.|+++.++|||.|+++|+.||||++||+.+...
T Consensus       261 Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~  297 (303)
T 2lqn_A          261 GDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ  297 (303)
Confidence            9999999999999999999999999999999988654

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.76  E-value=8.8e-21  Score=187.13  Aligned_cols=151  Identities=21%  Similarity=0.210  Sum_probs=100.0

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCCCCCCCCCccccCCCcccccc
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISPNCDISKSLKRIRPHHALRR   83 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~~~~~~~~~~~~~~~~~~~~~   83 (518)
                      .....|+|+|||.|+.++||+|++||+|.|+++.++|||.|+++|+.|+||++||+.....+....       ....+. 
T Consensus       172 ~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~~~-------~~~~~~-  243 (341)
T 2dyb_A          172 MAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEEDD-------PTNWLR-  243 (341)
T ss_dssp             CCCCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEECCCCTTC-------CCEEEE-
T ss_pred             cCCcEEEEEEeeCCCCCCcCCccCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEcCCCCcccc-------cccccc-
Confidence            345789999999999999999999999999999999999999999999999999986532221100       000000 


Q ss_pred             ccCCCCCcccCCccccCCCCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCccceeEEEEeecCCC----CCCCCCCC-
Q psy824           84 SVSQPLGINELSPLLRRKPIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVA----MEAEELGF-  158 (518)
Q Consensus        84 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~eL~~-  158 (518)
                                  ...........          .  +   .     ...... .....+.|+|+|.+    .++.+|+| 
T Consensus       244 ------------~~~~~~~~~~~----------~--~---~-----~~~~~~-~~~~~~~a~yd~~~~~~~~~e~eL~~~  290 (341)
T 2dyb_A          244 ------------CYYYEDTISTI----------K--D---I-----AVEEDL-SSTPLLKDLLELTRREFQREDIALNYR  290 (341)
T ss_dssp             ------------EEEECSSCEEE----------E--E---E-----EECSCT-TCCCCHHHHHHHHHHHHTCSCEEEEEE
T ss_pred             ------------ccccCCCCccc----------c--c---c-----cccccc-CCCcchhhhhhhhhhhcCCCcccccCC
Confidence                        00000000000          0  0   0     000000 00112357999987    45556666 


Q ss_pred             -CCCCEEEEEecCCCCeEEEEECCe---eEEEcCC-CEEEcc
Q psy824          159 -RAGDVIEVLDTLDRDWWWGTRGEA---SGWFPSA-FVRLRV  195 (518)
Q Consensus       159 -~~g~~i~v~~~~~~~w~~~~~~g~---~G~~P~~-~v~~~~  195 (518)
                       .+||+|.|+++.++|||.|+.+|+   .|+||.+ ||+...
T Consensus       291 ~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~~~~v~~~~  332 (341)
T 2dyb_A          291 DAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQKD  332 (341)
T ss_dssp             CSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSSCEEEEECC
T ss_pred             CCCCCEEEEeeecCCCEeEEEECCCCCCCceecceeEEEecC
Confidence             899999999999999999996554   4599998 777654

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.65  E-value=2.1e-16  Score=134.27  Aligned_cols=117  Identities=19%  Similarity=0.315  Sum_probs=55.6

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecC-CCCeEEEEECCeeEEEcCCCEEEcccCCCchHHHH-------Hhhhc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL-DRDWWWGTRGEASGWFPSAFVRLRVSQEDTVEDCL-------AALAS  210 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~-------~~~~~  210 (518)
                      ...++|+|||.++..+||+|++||+|.|+++. ++|||.|+.+|+.||||++||+.+.....+.....       .....
T Consensus         5 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (142)
T 2kbt_A            5 FGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDYSEYLPETGGGSGSSMTYKLILN   84 (142)
T ss_dssp             CCEEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEEETTEEEEEETTSEEESSCCCCCCC---------------
T ss_pred             CeEEEECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEEECCeeEEechHHEEEcccccCccccCCCccccccccccc
Confidence            45899999999999999999999999999984 79999999999999999999999865322111000       00000


Q ss_pred             CCCc--cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy824          211 GGSK--TLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEG  255 (518)
Q Consensus       211 ~~~~--~~~~~~~~~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~  255 (518)
                      +...  ............++..|+.++.+++.+|+.|++.|+.++..
T Consensus        85 ~~~~~~~~~te~~~~~~~~~~~r~~v~~~~~~~E~~y~~~~~~~~~~  131 (142)
T 2kbt_A           85 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVT  131 (142)
T ss_dssp             -----------------------------------------------
T ss_pred             ccccCccccccccchhhHHHHHHHHhhhcCccchhhHHHHHhhcccc
Confidence            0000  00001111234577889999999999999999999988763

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.65  E-value=1.3e-16  Score=113.29  Aligned_cols=55  Identities=29%  Similarity=0.716  Sum_probs=51.2

Q ss_pred             eEEEEeecCCCCCCCC-CCCCCCCEEEEEecCCCCeEEEEE-CCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEE-LGFRAGDVIEVLDTLDRDWWWGTR-GEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~e-L~~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~  194 (518)
                      ..|+|+|||+|+.++| |+|++||+|.|+++.++|||.|+. +|+.|+||++||+.|
T Consensus         4 ~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            4 ARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQLL   60 (60)
T ss_dssp             CEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECTTSCEEEECGGGEEEC
T ss_pred             CEEEECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEeCCCCEEEEcHHHEEEC
Confidence            4789999999999887 999999999999999999999995 799999999999975

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.63  E-value=1.9e-16  Score=112.43  Aligned_cols=55  Identities=18%  Similarity=0.380  Sum_probs=50.2

Q ss_pred             ceEEEEecCCCCCCCCC-cccCCCCEEEEEEecCCCeeEEEe-CCeeEEEEeeeeec
Q psy824            6 VVLAEAVWDHVAMEAEE-LGFRAGDVIEVLDTLDRDWWWGTR-GEAFEHLSQIIINH   60 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~e-L~~~~gd~i~v~~~~~~~Ww~g~~-~~~~g~~p~~~v~~   60 (518)
                      +..|+|+|||.|+.++| |+|++||+|.|+++.++|||.|++ +|+.|+||++||+.
T Consensus         3 g~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~~G~~G~fP~nyVe~   59 (60)
T 2lx7_A            3 GARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKEDGLRGWFPASYVQL   59 (60)
T ss_dssp             SCEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECTTSCEEEECGGGEEE
T ss_pred             CCEEEECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEeCCCCEEEEcHHHEEE
Confidence            46799999999999887 999999999999999999999997 47889999999873

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.62  E-value=1e-15  Score=110.91  Aligned_cols=56  Identities=27%  Similarity=0.612  Sum_probs=52.4

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE--CCeeEEEcCCCEEEc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRLR  194 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~  194 (518)
                      ...++|+|||.|+.++||+|++||+|.|++..++|||.|+.  +|+.|+||++||+++
T Consensus         6 ~~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~l   63 (65)
T 2lj0_A            6 LFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKPL   63 (65)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEEC
T ss_pred             CEEEEEceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEEE
Confidence            35789999999999999999999999999999999999985  799999999999986

>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}

Probab=99.60  E-value=1.7e-16  Score=141.29  Aligned_cols=116  Identities=13%  Similarity=0.241  Sum_probs=98.9

Q ss_pred             CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCC-----------CccccccccceEeeeeEE
Q psy824          393 SRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEGWE-----------GEDLIETSSQLIHQGEVI  461 (518)
Q Consensus       393 k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~~~-----------~~~l~~~~r~ll~~g~l~  461 (518)
                      .||+++|+|+.+|++|++.++.++.+||+.+++.|+.++|.++|++|++..           ..+|  ..|+||++|.|.
T Consensus         1 ~~T~~~~~e~~~L~~Al~~ik~i~~~VNe~vre~E~~~rL~eiq~~l~~~~~~~~~~~~~f~~~dL--~~R~Ll~eG~L~   78 (185)
T 2lg1_A            1 SMTKDNEVEQEDLAQSLSLVKDVIGAVDSKVASYEKKVRLNEIYTKTDSKSIMRMKSGQMFAKEDL--KRKKLVRDGSVF   78 (185)
T ss_dssp             CCSSTTTSCCTTSCCSSSSSTTTSGGGGGGHHHHHHHHHHHHHHHSSCSSCCEECTTSCEECHHHH--TTSCEEEEEEEE
T ss_pred             CCCCCCcHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccccccccccccccc--CCCceeeeceEE
Confidence            379999999999999999999999999999999999999999999998531           1123  249999999998


Q ss_pred             EEecCcccceEEEEEeCCeEEEEeeccCCCCceEEE------EEeecCCeeEEEcCCC
Q psy824          462 RVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYK------ARLNIDTSQIINLPDG  513 (518)
Q Consensus       462 ~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k------~~i~l~~~~v~~~~d~  513 (518)
                      ........+++|+|||||+||+|+++   +.+|.++      ..|+|+.+.|.++.++
T Consensus        79 ~k~~~~~~~d~~~fLf~D~Ll~~~~~---~~ky~~~~~~~~~pvi~L~~~~vre~a~d  133 (185)
T 2lg1_A           79 LKNAAGRLKEVQAVLLTDILVFLQEK---DQKYIFASLDQKSTVISLKKLIVREVAHE  133 (185)
T ss_dssp             EECTTCCEEEEEEEEESSEEECCEEE---TTEEECCCCSSSCSEEESSSCEEECCSSC
T ss_pred             EeccCCCeeeEEEEeecCEEEEEEec---CCEEEEEcccCCCCeEeecceEEeccCCC
Confidence            55444456799999999999999986   6788886      4699999999997663

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.58  E-value=2.4e-15  Score=112.87  Aligned_cols=53  Identities=17%  Similarity=0.387  Sum_probs=49.4

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      |.|+|+|||.+ .++||+|++||+|.|+++.++|||.|+.+|+.|+||++||+.
T Consensus         1 m~a~alydy~~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   53 (73)
T 2kxd_A            1 MGAPPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK   53 (73)
T ss_dssp             CCCCCCCSSCC-CSCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             CeEEEeeeeCC-CCCEeeEcCCCEEEEEEecCCCEEEEEECCCEEEEehHHeEE
Confidence            35899999999 899999999999999999999999999999999999888874

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.58  E-value=2.8e-15  Score=108.60  Aligned_cols=56  Identities=21%  Similarity=0.495  Sum_probs=51.3

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe--CCeeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEAFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~~~~g~~p~~~v~~   60 (518)
                      ....++|+|||.|+.++||+|++||+|.|+++.++|||.|++  +|+.|+||++||+.
T Consensus         5 ~~~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~nyVe~   62 (65)
T 2lj0_A            5 DLFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKP   62 (65)
T ss_dssp             SSCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEETTSEEE
T ss_pred             cCEEEEEceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCCCEEEEehhHeEE
Confidence            356789999999999999999999999999999999999987  47889999999874

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.55  E-value=8.7e-15  Score=106.71  Aligned_cols=58  Identities=24%  Similarity=0.473  Sum_probs=54.4

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ..++|+|||.++.++||+|++||+|.|++..++|||.|+.+|+.|+||++||+.+...
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   59 (65)
T 2nwm_A            2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPLE   59 (65)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCTTTCEEEEETTEEEEECGGGEEECCCC
T ss_pred             cEEEEeeeECCCCcCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehhhEEEcCCC
Confidence            3689999999999999999999999999998999999999999999999999988754

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.55  E-value=3.6e-15  Score=112.74  Aligned_cols=63  Identities=32%  Similarity=0.409  Sum_probs=56.9

Q ss_pred             CCccCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCC
Q psy824            1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSIS   63 (518)
Q Consensus         1 ~d~~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~   63 (518)
                      |++.....|+|+|||.++.++||+|++||+|.|+++.++|||.|+++|+.|+||++||+....
T Consensus        13 ~~~~~~~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~~g~~G~fP~nyV~~~~~   75 (79)
T 1z9q_A           13 MDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKD   75 (79)
T ss_dssp             -CCSSCCCEEESSCCCCSSTTBCCCCTTCCBCCCEESSSSEEEEEETTEEEEEEGGGEEESSC
T ss_pred             CCCCCceEEEEcCccCCCCCCcccccCCCEEEEeEecCCCEEEEEECCeEEEecHHHEEECCC
Confidence            456677889999999999999999999999999999999999999999999999999986543

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.55  E-value=8.1e-15  Score=104.61  Aligned_cols=56  Identities=32%  Similarity=0.527  Sum_probs=52.9

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV  195 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~  195 (518)
                      ..++|+|||.++.++||+|++||+|.|++..++|||.|+.+|+.|+||++||+.+.
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            2 VEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVREIK   57 (58)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCTTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEECcccCCCCcCEeeECCCCEEEEEEeCCCCEEEEEECCeEEEEehHHeEEcC
Confidence            35899999999999999999999999999989999999999999999999999874

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=3.4e-14  Score=107.95  Aligned_cols=60  Identities=25%  Similarity=0.520  Sum_probs=55.8

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ....++|+|||.++..+||+|++||+|.|+++.++|||.|+.+|+.|+||.+||+.+...
T Consensus        16 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   75 (78)
T 2ed0_A           16 YLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESISGP   75 (78)
T ss_dssp             CSEEEEECSCBCCSSTTBCCBCSSCEEEEEEECSSSEEEEEETTEEEEEETTSEEECSSS
T ss_pred             cCEEEEECccCCccCcCcccccCCCEEEEEEeCCCCEEEEEECCcEEEeChHHEEEcCCC
Confidence            346899999999999999999999999999999999999999999999999999988643

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.54  E-value=1.1e-14  Score=107.18  Aligned_cols=59  Identities=25%  Similarity=0.420  Sum_probs=55.0

Q ss_pred             eEEEEeecCCCC--CCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccCC
Q psy824          140 VLAEAVWDHVAM--EAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE  198 (518)
Q Consensus       140 ~~~~a~~~~~~~--~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~  198 (518)
                      .+++|+|+|.++  ..+||+|++||+|.|++..++|||.|+.+|+.|+||++||+.+....
T Consensus         2 ~~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~~   62 (67)
T 2bzy_A            2 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQN   62 (67)
T ss_dssp             EEEEECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEECCSCC
T ss_pred             cEEEEeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEEeCCcEEEEehHHeEECCCcC
Confidence            578999999999  99999999999999999999999999999999999999999987543

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=2.5e-14  Score=111.35  Aligned_cols=61  Identities=25%  Similarity=0.376  Sum_probs=55.5

Q ss_pred             cceeEEEEeecCCCC--CCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          137 DFVVLAEAVWDHVAM--EAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       137 ~~~~~~~a~~~~~~~--~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ....+++|+|||.+.  ..+||+|++||+|.|+++.++|||.|+.+|+.|+||++||+.+...
T Consensus        14 ~~~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   76 (88)
T 2dbk_A           14 NGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQ   76 (88)
T ss_dssp             CCCEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEECSSCEEEECTTTEEECCSS
T ss_pred             CCCEEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEeCCCEEEEehHHeEECCCC
Confidence            345689999999954  9999999999999999999999999999999999999999998754

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.54  E-value=1e-14  Score=105.77  Aligned_cols=60  Identities=22%  Similarity=0.412  Sum_probs=52.7

Q ss_pred             CCccCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         1 ~d~~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      ||+.....++|+|||.++.++||+|++||+|.|+++.+++||.|+.+|+.|+||++||+.
T Consensus         1 ~d~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~g~~G~~P~~yv~~   60 (62)
T 3ngp_A            1 MDETGKELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKK   60 (62)
T ss_dssp             -----CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             CCCCCCEEEEECcCCCCCCCCCccCCCCCEEEEeEecCCCeEEEEECCEEEEEEHHHEEE
Confidence            788888999999999999999999999999999999889999999999999999988874

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=2.2e-14  Score=105.89  Aligned_cols=58  Identities=17%  Similarity=0.248  Sum_probs=54.8

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ..+++|+|||.++..+||+|++||+|.|+++.++|||.|+.+|+.|+||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2dmo_A            7 GEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVSG   64 (68)
T ss_dssp             SEEEEECSSCCCCSSSSCCCCTTCEEEECEECSSSCEEEEETTEEEEECSTTEEECCC
T ss_pred             CCEEEECcCCCcCCcCCCCCCCCCEEEEEEeCCCCEEEEEeCCCEEEeehHHeEECCC
Confidence            4689999999999999999999999999999999999999999999999999998864

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.54  E-value=1.2e-14  Score=104.45  Aligned_cols=55  Identities=42%  Similarity=0.709  Sum_probs=52.7

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      ..++|+|||.++.++||+|++||+|.|++..++|||.|+.+|+.|+||++||+.+
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   59 (60)
T 1w70_A            5 MRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKIL   59 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCCCCccCCCCCEEEEEEeCCCCeEEEEECCCEEEechHHEEEC
Confidence            5799999999999999999999999999999999999999999999999999976

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=2.1e-14  Score=106.02  Aligned_cols=59  Identities=32%  Similarity=0.637  Sum_probs=55.2

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|+.+|+.|+||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dl4_A            7 GNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSGP   65 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCCSSEEEEECSSCEEEEETTTEEECCCC
T ss_pred             CCEEEEeeeECCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHeEECCCC
Confidence            45899999999999999999999999999998999999999999999999999988653

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.54  E-value=2.3e-14  Score=105.87  Aligned_cols=58  Identities=29%  Similarity=0.455  Sum_probs=54.7

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.++.++||+|++||+|.|++..+++||.|+.+|+.|+||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2djq_A            7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVISG   64 (68)
T ss_dssp             CCEEEECSCCCSCCTTCCCCCTTCEEEEEECCCSSEEEEEETTEEEEEESSSEETTCS
T ss_pred             ceEEEECCCCCCCCcCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeehHHEEEcCC
Confidence            4689999999999999999999999999999899999999999999999999998754

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.54  E-value=8e-15  Score=107.89  Aligned_cols=58  Identities=22%  Similarity=0.367  Sum_probs=53.9

Q ss_pred             eeEEEEeecCCCC--CCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAM--EAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~--~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      +..++|+|||.++  ..+||+|++||+|.|+++.++|||.|+.+|+.|+||++||+.+..
T Consensus         6 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   65 (67)
T 2eyx_A            6 PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQ   65 (67)
T ss_dssp             SCBEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEEETTEEEEEEGGGBCCBCS
T ss_pred             CEEEEEeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEEECCCEEEEehHhEEEcCC
Confidence            3579999999999  889999999999999999999999999999999999999998754

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.54  E-value=2.2e-14  Score=107.25  Aligned_cols=59  Identities=20%  Similarity=0.331  Sum_probs=54.7

Q ss_pred             eeEEEEeecCCCC--CCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAM--EAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~--~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.+.  ..+||+|++||+|.|+++.++|||.|+.+|+.|+||++||+.+...
T Consensus         9 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   69 (73)
T 2ebp_A            9 CGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSG   69 (73)
T ss_dssp             SEEEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEECSSCEEEECSTTEEECCCC
T ss_pred             ceEEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEECCCEEEEeHHHEEECCCC
Confidence            4689999999976  8999999999999999999999999999999999999999988653

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.54  E-value=1.3e-14  Score=105.79  Aligned_cols=57  Identities=18%  Similarity=0.298  Sum_probs=52.8

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCC
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSIS   63 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~   63 (518)
                      ..|+|+|||.++.++||+|++||+|.|+++.++|||.|+.+|+.|+||++||+....
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~   58 (65)
T 2nwm_A            2 KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYVEVLPL   58 (65)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCTTTCEEEEETTEEEEECGGGEEECCC
T ss_pred             cEEEEeeeECCCCcCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehhhEEEcCC
Confidence            469999999999999999999999999999889999999999999999999986543

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.54  E-value=1.4e-14  Score=103.35  Aligned_cols=56  Identities=41%  Similarity=0.805  Sum_probs=52.9

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV  195 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~  195 (518)
                      .+++|+|||.++.++||+|++||+|.|++..++|||.|+.+|+.|+||++||+.+.
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 1uti_A            2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPMM   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEEEECccCCCCCcCCCCCCCCCEEEEEEECCCCEEEEEECCeEEEeeHHHeEEcc
Confidence            47899999999999999999999999999989999999999999999999999763

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.53  E-value=1.4e-14  Score=103.45  Aligned_cols=55  Identities=36%  Similarity=0.689  Sum_probs=51.5

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      +.+|+|+|||.|+.++||+|++||+|.|+++.++|||.|+++|+.|+||++||+.
T Consensus         1 i~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   55 (58)
T 1uti_A            1 VRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP   55 (58)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             CeEEEECccCCCCCcCCCCCCCCCEEEEEEECCCCEEEEEECCeEEEeeHHHeEE
Confidence            3579999999999999999999999999999889999999999999999988874

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.53  E-value=1.7e-14  Score=103.26  Aligned_cols=56  Identities=36%  Similarity=0.712  Sum_probs=52.8

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      ...++|+|||.++.++||+|++||+|.|++..++|||.|+.+|+.|+||++||+.+
T Consensus         4 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            4 GSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI   59 (59)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CcEEEECceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            35899999999999999999999999999998999999999999999999999864

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.53  E-value=5.3e-15  Score=107.80  Aligned_cols=59  Identities=25%  Similarity=0.621  Sum_probs=54.7

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccCC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE  198 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~  198 (518)
                      ..++|+|||.++.++||+|++||+|.|++..++|||.|+.+|+.|+||++||+.+....
T Consensus         2 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~~   60 (65)
T 2fei_A            2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELEH   60 (65)
T ss_dssp             CEEECSSCCCCCSTTBCCCCTTCEEECCCCSSSSEEEEESSSCEEEEETTTSCBCCCCC
T ss_pred             eEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCcEEEecHHHEEEcCCCC
Confidence            36899999999999999999999999999989999999999999999999999876543

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.53  E-value=1.3e-14  Score=105.04  Aligned_cols=56  Identities=25%  Similarity=0.414  Sum_probs=52.5

Q ss_pred             EEEEeecCCCCCCCCCCCCCCCEEEEEec-CCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          141 LAEAVWDHVAMEAEELGFRAGDVIEVLDT-LDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~~~-~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      .++|+|||.++.++||+|++||+|.|+++ .++|||.|+.+|+.|+||++||+.+..
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   59 (62)
T 2j6f_A            3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKR   59 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEEETTEEEEEEGGGEEECC-
T ss_pred             EEEECccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCC
Confidence            58999999999999999999999999998 789999999999999999999998864

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.53  E-value=1.8e-14  Score=106.09  Aligned_cols=58  Identities=29%  Similarity=0.637  Sum_probs=54.1

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ..++|+|||.++.++||+|++||+|.|++..++|||.|+.+|+.|+||++||+.+...
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   61 (68)
T 2ew3_A            4 PCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVIVPL   61 (68)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEESSSSEEEEEETTEEEEEEGGGEEESCC-
T ss_pred             CEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEcCcc
Confidence            4789999999999999999999999999999999999999999999999999987643

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.53  E-value=7.9e-15  Score=116.83  Aligned_cols=60  Identities=33%  Similarity=0.686  Sum_probs=55.7

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccCC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE  198 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~  198 (518)
                      ...++|+|||.++..+||+|++||+|.|++..++|||.|+.+|+.||||.+||+.+....
T Consensus        34 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   93 (98)
T 1udl_A           34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDSS   93 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCCCS
T ss_pred             ceEEEECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehHHeEEcCCCC
Confidence            468999999999999999999999999999988999999999999999999999886543

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.53  E-value=1.6e-14  Score=103.74  Aligned_cols=56  Identities=25%  Similarity=0.368  Sum_probs=51.4

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeee
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIIN   59 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~   59 (518)
                      +....|+|+|||.++.++||+|++||+|.|+++.++|||.|+++|+.|+||++||+
T Consensus         4 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~   59 (60)
T 2gnc_A            4 GSPEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIV   59 (60)
T ss_dssp             --CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEE
T ss_pred             CCCEEEEECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEeHhhEE
Confidence            34678999999999999999999999999999988999999999999999998875

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.52  E-value=2.5e-14  Score=102.08  Aligned_cols=56  Identities=30%  Similarity=0.586  Sum_probs=52.9

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      ...++|+|||.++.++||+|++||+|.|+++.++|||.|+.+|+.|+||++||+.+
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            3 GIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQDI   58 (58)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEC
Confidence            35799999999999999999999999999998899999999999999999999864

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.52  E-value=2.1e-14  Score=102.45  Aligned_cols=55  Identities=25%  Similarity=0.638  Sum_probs=52.3

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      ..++|+|||.++.++||+|++||+|.|+++.++|||.|+.+|+.|+||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKPA   57 (58)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCCCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEc
Confidence            4789999999999999999999999999998999999999999999999999865

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.52  E-value=2.8e-14  Score=101.93  Aligned_cols=56  Identities=18%  Similarity=0.353  Sum_probs=52.5

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ++.|+|+|||.++.++||+|++||+|.|+++.++|||.|..+|+.|+||++||++.
T Consensus         1 ~~~a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~   56 (58)
T 4e6r_A            1 XIPAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEE   56 (58)
T ss_dssp             CEEEEECSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEEECCcEEEEehHHEEEC
Confidence            46899999999999999999999999999999899999999999999999998853

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.52  E-value=2.7e-14  Score=105.36  Aligned_cols=58  Identities=26%  Similarity=0.556  Sum_probs=54.0

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecC--CCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ..++|+|||.++.++||+|++||+|.|++..  ++|||.|+.+|+.|+||++||+.+...
T Consensus         3 ~~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~~P~~yV~~~~~~   62 (69)
T 2ydl_A            3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPL   62 (69)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEETTEEEEEEGGGEEECCSC
T ss_pred             cEEEEcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEEECCcEEEecHHHEEECCCC
Confidence            4789999999999999999999999999986  789999999999999999999988643

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.52  E-value=6.3e-15  Score=107.39  Aligned_cols=56  Identities=16%  Similarity=0.495  Sum_probs=52.2

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      .+|+|+|||.++.++||+|++||+|.|+++.++|||.|+++|+.|+||++||+...
T Consensus         2 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~   57 (65)
T 2fei_A            2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE   57 (65)
T ss_dssp             CEEECSSCCCCCSTTBCCCCTTCEEECCCCSSSSEEEEESSSCEEEEETTTSCBCC
T ss_pred             eEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCcEEEecHHHEEEcC
Confidence            57999999999999999999999999999988999999999999999999988543

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.52  E-value=1.6e-14  Score=103.11  Aligned_cols=54  Identities=22%  Similarity=0.366  Sum_probs=51.0

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      +.|+|+|||.++.++||+|++||+|.|+++.++|||.|+.+|+.|+||+.||+.
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   55 (58)
T 2bz8_A            2 VEAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFVRE   55 (58)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCTTTEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEEECcccCCCCcCEeeECCCCEEEEEEeCCCCEEEEEECCeEEEEehHHeEE
Confidence            468999999999999999999999999999899999999999999999988874

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.52  E-value=2.4e-14  Score=102.52  Aligned_cols=57  Identities=23%  Similarity=0.429  Sum_probs=52.7

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      .....++|+|||.++.++||+|++||+|.|+++.+++||.|+++|+.|+||++||+.
T Consensus         2 p~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   58 (59)
T 2g6f_X            2 PLGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE   58 (59)
T ss_dssp             CCCCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEE
T ss_pred             CCCcEEEECceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEE
Confidence            345789999999999999999999999999999899999999999999999988863

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.52  E-value=2.4e-14  Score=102.92  Aligned_cols=55  Identities=27%  Similarity=0.575  Sum_probs=52.5

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      ..++|+|||.++.++||+|++||+|.|+++.++|||.|+.+|+.|+||++||+.+
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            6 PQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVTKI   60 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCEEEEEcHHHEEEC
Confidence            5799999999999999999999999999999999999999999999999999864

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.52  E-value=2.1e-14  Score=103.13  Aligned_cols=55  Identities=33%  Similarity=0.473  Sum_probs=51.7

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      .+.|+|+|||.++.++||+|++||+|.|+++.++|||.|+.+|+.|+||++||+.
T Consensus         4 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~   58 (60)
T 1w70_A            4 HMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKI   58 (60)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             CcEEEECccCCcCCCCCccCCCCCEEEEEEeCCCCeEEEEECCCEEEechHHEEE
Confidence            4679999999999999999999999999999999999999999999999988874

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=3.8e-14  Score=105.93  Aligned_cols=60  Identities=25%  Similarity=0.488  Sum_probs=55.8

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ....++|+|||.++..+||+|++||+|.|+++.++|||.|+.+|+.|+||++||+.+...
T Consensus         8 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   67 (72)
T 2dl8_A            8 EPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTS   67 (72)
T ss_dssp             SCEEEEESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEETTEEEEECSSSEEECCSS
T ss_pred             CCEEEEECccCCcCCCCEeccCCCCEEEEEeecCCCEEEEEECCEEEEEchHHeEEcCCC
Confidence            346899999999999999999999999999998899999999999999999999988654

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.52  E-value=3.2e-14  Score=105.00  Aligned_cols=56  Identities=16%  Similarity=0.353  Sum_probs=52.1

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEec--CCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~--~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      .+|+|+|||.|+.++||+|++||+|.|+.+.  ++|||.|+++|+.|+||++||+...
T Consensus         3 ~~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~~P~~yV~~~~   60 (69)
T 2ydl_A            3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLP   60 (69)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             cEEEEcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEEECCcEEEecHHHEEECC
Confidence            5799999999999999999999999999986  7899999999999999999998654

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.52  E-value=2e-14  Score=104.03  Aligned_cols=55  Identities=18%  Similarity=0.276  Sum_probs=51.4

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEe-cCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDT-LDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~-~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      +.|+|+|||.++.++||+|++||+|.|+++ .++|||.|+++|+.|+||++||+..
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (62)
T 2j6f_A            2 VDYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEI   57 (62)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEEC
Confidence            468999999999999999999999999999 7899999999999999999998854

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.52  E-value=1.8e-14  Score=105.14  Aligned_cols=58  Identities=17%  Similarity=0.385  Sum_probs=53.0

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE-eCCeeEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEAFEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~-~~~~~g~~p~~~v~~~~   62 (518)
                      ...+|+|+|||.++.++||+|++||+|.|+++.++|||.|+ .+|+.|+||++||....
T Consensus         2 ~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   60 (65)
T 1b07_A            2 SAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYH   60 (65)
T ss_dssp             CCCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEECC
T ss_pred             CceEEEECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEECCCCEEEEChHHEeecC
Confidence            45789999999999999999999999999999889999999 78889999999988553

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.52  E-value=2.8e-14  Score=104.06  Aligned_cols=58  Identities=34%  Similarity=0.707  Sum_probs=54.4

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.++.++||+|++||+|.|++..++|||.|+.+|+.|+||++||+.+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   63 (64)
T 2ak5_A            6 QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREIKP   63 (64)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEECCC
T ss_pred             CEEEEEccccCCcCcCcccCCCCCEEEEeEecCCCEEEEEECCCEEEEehHHeEEcCC
Confidence            3589999999999999999999999999999899999999999999999999998753

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=2.9e-14  Score=105.23  Aligned_cols=59  Identities=14%  Similarity=0.086  Sum_probs=54.6

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ....+|+|+|||.++.++||+|++||+|.|+++.++|||.|+.+|+.|+||++||+...
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (68)
T 2dmo_A            5 SSGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEPVS   63 (68)
T ss_dssp             CCSEEEEECSSCCCCSSSSCCCCTTCEEEECEECSSSCEEEEETTEEEEECSTTEEECC
T ss_pred             CCCCEEEECcCCCcCCcCCCCCCCCCEEEEEEeCCCCEEEEEeCCCEEEeehHHeEECC
Confidence            34678999999999999999999999999999999999999999999999999998654

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.52  E-value=3.4e-14  Score=103.64  Aligned_cols=56  Identities=23%  Similarity=0.548  Sum_probs=52.4

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecC--CCCeEEEEECCeeEEEcCCCEEEc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      ...++|+|||.++..+||+|++||+|.|+++.  ++|||.|+.+|+.|+||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~l   63 (64)
T 2jte_A            6 KEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI   63 (64)
T ss_dssp             SEEEEESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEETTEEEEEEGGGEEEC
T ss_pred             CEEEEECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEEECCeEEEEeHHHEEEC
Confidence            46899999999999999999999999999885  689999999999999999999876

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.51  E-value=2.9e-14  Score=101.68  Aligned_cols=56  Identities=25%  Similarity=0.439  Sum_probs=52.1

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      ...+++|+|||.++.++||+|++||+|.|+++.+++||.|+++|+.|+||++||++
T Consensus         2 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            2 QVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE   57 (58)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             CcEEEEECccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEEECCCEEEEehHHEEe
Confidence            45689999999999999999999999999999889999999999999999988863

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.51  E-value=2e-14  Score=102.55  Aligned_cols=54  Identities=39%  Similarity=0.650  Sum_probs=51.2

Q ss_pred             EEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEEC--CeeEEEcCCCEEEc
Q psy824          141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EASGWFPSAFVRLR  194 (518)
Q Consensus       141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~  194 (518)
                      .++|+|||.++.++||+|++||+|.|++..++|||.|+..  |+.|+||++||+.+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEECceECCCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEEC
Confidence            5789999999999999999999999999989999999976  99999999999876

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.51  E-value=4.6e-14  Score=104.27  Aligned_cols=60  Identities=20%  Similarity=0.250  Sum_probs=55.0

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSIS   63 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~   63 (518)
                      ....+|+|+|||.++.++||+|++||+|.|+++.+++||.|+++|+.|+||+.||+....
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2djq_A            5 SSGPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSVEVISG   64 (68)
T ss_dssp             SSCCEEEECSCCCSCCTTCCCCCTTCEEEEEECCCSSEEEEEETTEEEEEESSSEETTCS
T ss_pred             CCceEEEECCCCCCCCcCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeehHHEEEcCC
Confidence            446789999999999999999999999999999889999999999999999999986543

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.51  E-value=2.7e-14  Score=101.92  Aligned_cols=55  Identities=38%  Similarity=0.747  Sum_probs=52.6

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      ..++|+|||.++.++||+|++||+|.|++..++|||.|+.+|+.|+||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            3 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTAV   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCcEEEEchHHeEEC
Confidence            5789999999999999999999999999998999999999999999999999876

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.51  E-value=2.8e-14  Score=105.04  Aligned_cols=56  Identities=20%  Similarity=0.402  Sum_probs=52.4

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ..+|+|+|||.++.++||+|++||+|.|+++.++|||.|+++|+.|+||++||+..
T Consensus         3 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   58 (68)
T 2ew3_A            3 QPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYVEVI   58 (68)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEESSSSEEEEEETTEEEEEEGGGEEES
T ss_pred             CCEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEEc
Confidence            35799999999999999999999999999999999999999999999999999854

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=2.8e-14  Score=105.35  Aligned_cols=60  Identities=23%  Similarity=0.453  Sum_probs=54.8

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSIS   63 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~   63 (518)
                      .....++|+|||.++.++||+|++||+|.|+++.+++||.|+++|+.|+||++||+....
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2dl4_A            5 SSGNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSG   64 (68)
T ss_dssp             SCCCEEEESSCCCCSSTTBCCCCTTCEEEEEECCCSSEEEEECSSCEEEEETTTEEECCC
T ss_pred             CCCCEEEEeeeECCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHeEECCC
Confidence            346789999999999999999999999999999889999999999999999999986543

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=2.5e-14  Score=108.10  Aligned_cols=61  Identities=33%  Similarity=0.604  Sum_probs=56.4

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccCC
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE  198 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~  198 (518)
                      ....++|+|||.++..+||+|++||+|.|++..+++||.|+.+|+.||||.+||+.+...+
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   69 (76)
T 2epd_A            9 GVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTE   69 (76)
T ss_dssp             CCEEEEESSCEECSSTTBCEECTTCEEEEEEEEETTEEEEEETTEEEEEESSSEECCSSCS
T ss_pred             CCEEEEECcCCCCCCCCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCCCC
Confidence            4468999999999999999999999999999988999999999999999999999887553

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=4.7e-14  Score=104.15  Aligned_cols=59  Identities=29%  Similarity=0.522  Sum_probs=55.0

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ....++|+|||.++.++||+|++||+|.|++..+++||.|+.+|+.|+||++||+.+..
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1x2k_A            6 SGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQSG   64 (68)
T ss_dssp             CSEEEEESSCCCCCSTTBCCCCSSCEEEEEECSCSSEEEEESSSCEEEEETTTEEECCC
T ss_pred             CcEEEEECceECCCCCCcccCCCCCEEEEEEcCCCCEEEEEECCcEEEEehHHeEEcCC
Confidence            34689999999999999999999999999999889999999999999999999998853

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.51  E-value=2e-14  Score=104.15  Aligned_cols=58  Identities=24%  Similarity=0.441  Sum_probs=53.5

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      .....++|+|||.++.++||+|++||+|.|+++.++|||.|+.+|+.|+||++||+..
T Consensus         3 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   60 (62)
T 1k4u_S            3 KKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDS   60 (62)
T ss_dssp             CCCEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCS
T ss_pred             CCCeEEEECCCCCcCCCCCccCCCCCEEEEEEeCCCCEEEEEECCcEEEEeHHHEEEC
Confidence            3567899999999999999999999999999998899999999999999999888753

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=4.1e-14  Score=106.55  Aligned_cols=59  Identities=24%  Similarity=0.351  Sum_probs=54.0

Q ss_pred             eeEEEEeecCCCCC-------CCCCCCCCCCEEEEEe-cCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAME-------AEELGFRAGDVIEVLD-TLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~-------~~eL~~~~g~~i~v~~-~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++.       .+||+|++||+|.|+. ..++|||.|+.+|+.|+||++||+.+..+
T Consensus         7 ~~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   73 (75)
T 2ege_A            7 GKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHMSLH   73 (75)
T ss_dssp             SEEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEESSSCEEEEETTTEEECCCC
T ss_pred             CcEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEECCcEEEEChHHeEEccCC
Confidence            46899999999999       9999999999999997 47899999999999999999999988543

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.51  E-value=3.2e-14  Score=101.59  Aligned_cols=55  Identities=35%  Similarity=0.683  Sum_probs=52.4

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      ..++|+|||.++.++||+|++||+|.|++..++|||.|+.+|+.|+||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1sem_A            3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECcCCCCCCCCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEC
Confidence            4789999999999999999999999999999999999999999999999999875

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.51  E-value=6.1e-14  Score=106.63  Aligned_cols=59  Identities=22%  Similarity=0.320  Sum_probs=54.6

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      .....|+|+|||.++.++||+|++||+|.|+++.+++||.|+++|+.|+||.+||+...
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (78)
T 2yuo_A            5 SSGRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLD   63 (78)
T ss_dssp             CCCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEEC
T ss_pred             CCceEEEECccCCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEEehHHEEECC
Confidence            45678999999999999999999999999999989999999999999999999998653

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.51  E-value=4e-14  Score=101.08  Aligned_cols=56  Identities=30%  Similarity=0.611  Sum_probs=52.9

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV  195 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~  195 (518)
                      ..|+|+|||.++.++||+|++||+|.|+++.++|||.|..+|+.|+||++||+.+.
T Consensus         2 ~~a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   57 (58)
T 4e6r_A            2 IPAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYVLEEV   57 (58)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEECccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEEECCcEEEEehHHEEECC
Confidence            57899999999999999999999999999999999999999999999999998753

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.51  E-value=3.3e-14  Score=101.44  Aligned_cols=55  Identities=18%  Similarity=0.444  Sum_probs=51.1

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      ..+|+|+|||.++.++||+|++||+|.|+++.++|||.|+++|+.|+||++||+.
T Consensus         2 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   56 (58)
T 1zx6_A            2 MEYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKP   56 (58)
T ss_dssp             -CEEEECSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             CeEEEECceECCCCCCCccCCCCCEEEEEEecCCCEEEEEECCcEEEeeHHHEEE
Confidence            3579999999999999999999999999999899999999999999999988874

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.51  E-value=2.9e-14  Score=104.88  Aligned_cols=56  Identities=14%  Similarity=0.222  Sum_probs=52.2

Q ss_pred             ceEEEEecCCCCC--CCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAM--EAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~--~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ..+|+|+|||.++  .++||+|++||+|.|+++.++|||.|+++|+.|+||+.||+..
T Consensus         6 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~   63 (67)
T 2eyx_A            6 PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLL   63 (67)
T ss_dssp             SCBEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEEETTEEEEEEGGGBCCB
T ss_pred             CEEEEEeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEEECCCEEEEehHhEEEc
Confidence            4579999999999  8999999999999999999999999999999999999999854

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=6.3e-14  Score=109.15  Aligned_cols=60  Identities=37%  Similarity=0.684  Sum_probs=55.7

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ....++|+|||.++..+||+|++||+|.|+++.++|||.|+..|+.|+||.+||+.+...
T Consensus        16 ~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   75 (88)
T 1x2q_A           16 VARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNI   75 (88)
T ss_dssp             CCEEEEESSCCCCCSSSCCCCCSSCEEEEEECSCSSSEEEEETTEEEEECGGGEESCSSC
T ss_pred             CCeEEEEcccCCCCCcCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcCCc
Confidence            456899999999999999999999999999998999999999999999999999987654

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.51  E-value=2.2e-14  Score=103.04  Aligned_cols=55  Identities=27%  Similarity=0.550  Sum_probs=52.0

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEE
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL  193 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~  193 (518)
                      ...++|+|||.++.++||+|++||+|.|+++.++|||.|+.+|+.|+||++||++
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   60 (60)
T 2gnc_A            6 PEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVV   60 (60)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEC
T ss_pred             CEEEEECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEeHhhEEC
Confidence            4689999999999999999999999999999889999999999999999999973

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=3.6e-14  Score=108.71  Aligned_cols=63  Identities=60%  Similarity=1.200  Sum_probs=57.7

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccCCCc
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDT  200 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~  200 (518)
                      ....++|+|||.++..+||+|++||+|.|+++.++|||.|+.+|+.||||.+||+.+......
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~   71 (81)
T 2ysq_A            9 SIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQEDE   71 (81)
T ss_dssp             CCEEEEESSCCCCSSSSSCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEESSCCCCC
T ss_pred             CceEEEEeeeECCCCCCcCCCCCCCEEEEEEEcCcCEEEEEECCCEEEechHHEEEcCCcccc
Confidence            457899999999999999999999999999998999999999999999999999998765443

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.51  E-value=3.5e-14  Score=105.25  Aligned_cols=58  Identities=34%  Similarity=0.625  Sum_probs=54.3

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecC---CCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL---DRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~---~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.++..+||+|++||+|.|++..   ++|||.|+.+|+.|+||++||+.+..
T Consensus         3 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   63 (69)
T 1wyx_A            3 NVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVG   63 (69)
T ss_dssp             EEEEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEETTEEEEEEGGGEEEEEE
T ss_pred             CEEEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEECCcEEEechhhEEECCC
Confidence            46799999999999999999999999999987   79999999999999999999998754

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.51  E-value=4e-14  Score=102.46  Aligned_cols=56  Identities=29%  Similarity=0.567  Sum_probs=52.7

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      ....++|+|||.++.++||+|++||+|.|+++.++|||.|++.|+.|+||++||+.
T Consensus         4 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   59 (62)
T 1uj0_A            4 MARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT   59 (62)
T ss_dssp             CCEEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEES
T ss_pred             CCeEEEECccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCCEEEechhHEEE
Confidence            46789999999999999999999999999999889999999999999999998874

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.51  E-value=3.7e-14  Score=101.90  Aligned_cols=55  Identities=20%  Similarity=0.373  Sum_probs=51.8

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeee
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIIN   59 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~   59 (518)
                      ....++|+|||.++.++||+|++||+|.|+++.++|||.|+++|+.|+||++||+
T Consensus         4 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~   58 (60)
T 2xmf_A            4 GSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYVT   58 (60)
T ss_dssp             CSCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTEEEEEEGGGEE
T ss_pred             CCcEEEECccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCEEEEEcHHHEE
Confidence            4578999999999999999999999999999989999999999999999998886

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.51  E-value=3.9e-14  Score=104.25  Aligned_cols=55  Identities=18%  Similarity=0.238  Sum_probs=51.9

Q ss_pred             eEEEEecCCCCC--CCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            7 VLAEAVWDHVAM--EAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         7 ~~~~al~d~~~~--~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      .+|+|+|||.++  .++||+|++||+|.|+++.++|||.|+++|+.|+||++||+..
T Consensus         2 ~~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~   58 (67)
T 2bzy_A            2 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIF   58 (67)
T ss_dssp             EEEEECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEEeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEEeCCcEEEEehHHeEEC
Confidence            479999999999  9999999999999999999999999999999999999999864

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.50  E-value=3.6e-14  Score=102.01  Aligned_cols=55  Identities=36%  Similarity=0.691  Sum_probs=51.7

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecC--CCCeEEEEECCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      ..++|+|||.++.++||+|++||+|.|++..  ++|||.|+.+|+.|+||++||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            4 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   60 (60)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEECCEEEEEeHHHEEEC
Confidence            4789999999999999999999999999986  789999999999999999999864

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=7.3e-14  Score=104.71  Aligned_cols=60  Identities=30%  Similarity=0.478  Sum_probs=54.9

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEec---CCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDT---LDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~---~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ....++|+|||.++..+||+|++||+|.|+++   .++|||.|+.+|+.|+||++||+.+...
T Consensus         7 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   69 (73)
T 2dl7_A            7 GVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSG   69 (73)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEETTEEEEECSSSEEECCSS
T ss_pred             CCEEEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEECCCEEEEChHHEEECCCC
Confidence            34689999999999999999999999999998   4789999999999999999999988643

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=4.5e-14  Score=104.34  Aligned_cols=58  Identities=29%  Similarity=0.574  Sum_probs=54.3

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.++.++||+|++||+|.|++..+++||.|+.+|+.||||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1x2p_A            7 GEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHSG   64 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECTTCCEEEESSSEECCCC
T ss_pred             CCEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCeEEEEehHHeEECCC
Confidence            3579999999999999999999999999999899999999999999999999998754

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.50  E-value=6.1e-14  Score=103.64  Aligned_cols=58  Identities=26%  Similarity=0.514  Sum_probs=54.7

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.++..+||+|++||+|.|++..+++||.|+.+|+.|+||.+||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2dl3_A            7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLSG   64 (68)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEECSSCEEEEETTTEEECCS
T ss_pred             CcEEEECccCCCCCcCCccCCCCCEEEEeEecCCCEEEEEECCCEEEEchHHEEECCC
Confidence            4689999999999999999999999999999899999999999999999999998864

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.50  E-value=3.5e-14  Score=106.16  Aligned_cols=59  Identities=17%  Similarity=0.306  Sum_probs=53.6

Q ss_pred             cCceEEEEecCCCCC--CCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAM--EAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~--~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      .....|+|+|||.+.  .++||+|++||+|.|+++.++|||.|+++|+.|+||++||+...
T Consensus         7 ~~~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~yv~~~~   67 (73)
T 2ebp_A            7 GFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLS   67 (73)
T ss_dssp             CCSEEEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEECSSCEEEECSTTEEECC
T ss_pred             ccceEEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEECCCEEEEeHHHEEECC
Confidence            345689999999976  99999999999999999989999999999999999999998653

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.50  E-value=8.3e-14  Score=106.70  Aligned_cols=60  Identities=32%  Similarity=0.499  Sum_probs=55.0

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEec--CCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDT--LDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~--~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ....++|+|||.++..+||+|++||+|.|++.  .++|||.|+.+|+.|+||++||+.+...
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   77 (81)
T 1x43_A           16 NNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNSG   77 (81)
T ss_dssp             CCEEEEESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEETTEEEEEEGGGEEECCCC
T ss_pred             CCeEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEECCCEEEEehHHEEECCCC
Confidence            34689999999999999999999999999998  4689999999999999999999988643

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.50  E-value=1.4e-14  Score=109.57  Aligned_cols=59  Identities=39%  Similarity=0.621  Sum_probs=55.1

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++.++||+|++||+|.|++..++|||.|+.+|+.|+||++||+.+...
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~~g~~G~fP~nyV~~~~~~   76 (79)
T 1z9q_A           18 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDF   76 (79)
T ss_dssp             CCCEEESSCCCCSSTTBCCCCTTCCBCCCEESSSSEEEEEETTEEEEEEGGGEEESSCC
T ss_pred             ceEEEEcCccCCCCCCcccccCCCEEEEeEecCCCEEEEEECCeEEEecHHHEEECCCC
Confidence            45789999999999999999999999999999999999999999999999999988653

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.50  E-value=4e-14  Score=103.70  Aligned_cols=55  Identities=33%  Similarity=0.700  Sum_probs=52.6

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      ..++|+|||.++..+||+|++||+|.|+++.++|||.|+.+|+.|+||++||+.+
T Consensus        10 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   64 (65)
T 3ulr_B           10 ITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELR   64 (65)
T ss_dssp             SCEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEEEeeECCCCcCEeeEecCCEEEEEEecCCCEEEEEECCcEEEEehHHeEEC
Confidence            4789999999999999999999999999999999999999999999999999976

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.50  E-value=4.7e-14  Score=100.67  Aligned_cols=55  Identities=24%  Similarity=0.361  Sum_probs=51.8

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeee
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIIN   59 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~   59 (518)
                      ....++|+|||.++.++||+|++||+|.|+++.+++||.|+.+|+.|+||++|++
T Consensus         2 p~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~   56 (58)
T 2drm_A            2 PGIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYVQ   56 (58)
T ss_dssp             CCEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEE
T ss_pred             CCcEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEE
Confidence            4578999999999999999999999999999988999999999999999998886

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.50  E-value=4.6e-14  Score=106.69  Aligned_cols=61  Identities=31%  Similarity=0.550  Sum_probs=55.5

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECC---eeEEEcCCCEEEcccCC
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE---ASGWFPSAFVRLRVSQE  198 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g---~~G~~P~~~v~~~~~~~  198 (518)
                      ....++|+|||.++..+||+|++||+|.|+++.++|||.|+..|   +.|+||++||+.+....
T Consensus         9 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~~~~~   72 (76)
T 2ed1_A            9 KVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILSDSG   72 (76)
T ss_dssp             CCEEEEESSCCCCSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEECCCCC
T ss_pred             CCeEEEECccCCCCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEECCCCC
Confidence            34689999999999999999999999999998899999999766   99999999999987543

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.50  E-value=3.8e-14  Score=105.06  Aligned_cols=57  Identities=30%  Similarity=0.480  Sum_probs=52.9

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEec---CCCeeEEEeCCeeEEEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL---DRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~---~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ..+.|+|+|||.++.++||+|++||+|.|+++.   ++|||.|+++|+.|+||++||+..
T Consensus         2 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   61 (69)
T 1wyx_A            2 LNVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKIL   61 (69)
T ss_dssp             CEEEEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEETTEEEEEEGGGEEEE
T ss_pred             CCEEEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEECCcEEEechhhEEEC
Confidence            467899999999999999999999999999997   789999999999999999998854

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.50  E-value=4.2e-14  Score=104.42  Aligned_cols=57  Identities=14%  Similarity=0.240  Sum_probs=52.1

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCC-----eeEEEEeeeeec
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-----AFEHLSQIIINH   60 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~-----~~g~~p~~~v~~   60 (518)
                      .....|+|+|||.++.++||+|++||+|.|+++.++|||.|++.+     +.|+||++||+.
T Consensus         5 ~~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~   66 (68)
T 1tg0_A            5 EVPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAV   66 (68)
T ss_dssp             CSSEEEEESSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEE
T ss_pred             CCCEEEEECeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEE
Confidence            345689999999999999999999999999999899999999877     889999998874

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.50  E-value=3.1e-14  Score=103.82  Aligned_cols=58  Identities=22%  Similarity=0.536  Sum_probs=53.3

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEcccC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~  197 (518)
                      ..++|+|||.++.++||+|++||+|.|++..++|||.|+ .+|+.|+||++||+.+...
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   62 (65)
T 1b07_A            4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHHH   62 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEECC--
T ss_pred             eEEEECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEECCCCEEEEChHHEeecCCC
Confidence            578999999999999999999999999999889999999 8999999999999987643

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=9.9e-14  Score=105.71  Aligned_cols=59  Identities=32%  Similarity=0.637  Sum_probs=55.0

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++..+||+|++||+|.|++..++|||.|+.+|+.||||++||+.+...
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   75 (79)
T 1x69_A           17 GITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQSG   75 (79)
T ss_dssp             CCCEEESSCCCCSSSSBCCCCTTCEEEEEEECSSSEEEEEETTEEEEEETTSEEECCCC
T ss_pred             CeEEEECccCCCCCCCCcCcCCCCEEEEeEecCCCeEEEEECCcEEEechHHEEECCCC
Confidence            35799999999999999999999999999998999999999999999999999988653

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.50  E-value=2.2e-14  Score=103.89  Aligned_cols=57  Identities=32%  Similarity=0.545  Sum_probs=53.4

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV  195 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~  195 (518)
                      ...++|+|||.++.++||+|++||+|.|++..++|||.|+.+|+.|+||++||+.+.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   61 (62)
T 1k4u_S            5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCSC
T ss_pred             CeEEEECCCCCcCCCCCccCCCCCEEEEEEeCCCCEEEEEECCcEEEEeHHHEEECC
Confidence            358999999999999999999999999999989999999999999999999998763

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=4.7e-14  Score=105.42  Aligned_cols=59  Identities=24%  Similarity=0.338  Sum_probs=54.3

Q ss_pred             ccCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         3 ~~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      +...+.|+|+|||.++.++||+|++||+|.|+++.+++||.|+++|+.|+||++||+..
T Consensus         6 ~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   64 (72)
T 2dl8_A            6 SGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQ   64 (72)
T ss_dssp             SCSCEEEEESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEETTEEEEECSSSEEEC
T ss_pred             CCCCEEEEECccCCcCCCCEeccCCCCEEEEEeecCCCEEEEEECCEEEEEchHHeEEc
Confidence            34567899999999999999999999999999998899999999999999999999854

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.50  E-value=6.6e-14  Score=106.45  Aligned_cols=60  Identities=32%  Similarity=0.620  Sum_probs=56.0

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccCC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE  198 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~  198 (518)
                      ...++|+|||.++..+||+|++||+|.|++..+++||.|+.+|+.||||.+||+.+....
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (78)
T 2yuo_A            7 GRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERS   66 (78)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEECCCC
T ss_pred             ceEEEECccCCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEEehHHEEECCCcC
Confidence            468999999999999999999999999999999999999999999999999999987543

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.50  E-value=6.6e-14  Score=103.92  Aligned_cols=56  Identities=41%  Similarity=0.734  Sum_probs=52.4

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEE
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL  193 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~  193 (518)
                      ....++|+|||.++..+||+|++||+|.|++..++|||.|+.+|+.|+||++||++
T Consensus        16 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           16 EARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVTA   71 (72)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEECSSCEEECTTCCEEE
T ss_pred             CCeEEEECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCEEEechhhCcc
Confidence            34689999999999999999999999999999889999999999999999999974

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.49  E-value=8e-14  Score=104.54  Aligned_cols=59  Identities=25%  Similarity=0.552  Sum_probs=54.7

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecC--CCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ..+++|+|||.++.++||+|++||+|.|++..  ++|||.|+.+|+.|+||++||+.+...
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   69 (73)
T 2k9g_A            9 KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPD   69 (73)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEETTEEEEEEGGGEEECCSS
T ss_pred             ccEEEECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEEECCeEEEEchHHEEECCcc
Confidence            46899999999999999999999999999985  799999999999999999999988643

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=5.2e-14  Score=103.93  Aligned_cols=60  Identities=22%  Similarity=0.361  Sum_probs=54.8

Q ss_pred             ccCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         3 ~~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      +....+++|+|||.++.++||+|++||+|.|+++.+++||.|+++|+.|+||+.||+...
T Consensus         4 ~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (68)
T 1x2k_A            4 GSSGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQS   63 (68)
T ss_dssp             CCCSEEEEESSCCCCCSTTBCCCCSSCEEEEEECSCSSEEEEESSSCEEEEETTTEEECC
T ss_pred             CCCcEEEEECceECCCCCCcccCCCCCEEEEEEcCCCCEEEEEECCcEEEEehHHeEEcC
Confidence            345678999999999999999999999999999988999999999999999999988653

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.49  E-value=4.4e-14  Score=100.86  Aligned_cols=54  Identities=26%  Similarity=0.510  Sum_probs=50.9

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      .+++|+|||.++.++||+|++||+|.|+++.++|||.|+.+|+.|+||+.+|+.
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   56 (58)
T 1sem_A            3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCP   56 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             eEEEECcCCCCCCCCCcCCCCCCEEEEEEecCCCEEEEEECCcEEEechHHeEE
Confidence            579999999999999999999999999999889999999999999999988863

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.49  E-value=3.2e-14  Score=101.51  Aligned_cols=53  Identities=28%  Similarity=0.420  Sum_probs=49.9

Q ss_pred             EEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC--CeeEEEEeeeeec
Q psy824            8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EAFEHLSQIIINH   60 (518)
Q Consensus         8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~--~~~g~~p~~~v~~   60 (518)
                      .|+|+|||.++.++||+|++||+|.|+++.++|||.|++.  |+.|+||++||+.
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~   56 (58)
T 1jo8_A            2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL   56 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             EEEECceECCCCCCCcccCCCCEEEEEEecCCCcEEEEECCCCCEEEechHHeEE
Confidence            5899999999999999999999999999989999999998  8999999988873

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=8.3e-14  Score=106.70  Aligned_cols=61  Identities=44%  Similarity=0.866  Sum_probs=55.7

Q ss_pred             ccCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCC
Q psy824            3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSIS   63 (518)
Q Consensus         3 ~~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~   63 (518)
                      .....+|+|+|||.++.++||+|++||+|.|+++.+++||.|+++|+.|+||++||+....
T Consensus         7 ~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (81)
T 2ysq_A            7 GDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVN   67 (81)
T ss_dssp             CCCCEEEEESSCCCCSSSSSCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEESSC
T ss_pred             CCCceEEEEeeeECCCCCCcCCCCCCCEEEEEEEcCcCEEEEEECCCEEEechHHEEEcCC
Confidence            3457889999999999999999999999999999899999999999999999999986543

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=5.6e-14  Score=104.84  Aligned_cols=60  Identities=23%  Similarity=0.467  Sum_probs=55.3

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecC---CCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL---DRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~---~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ....++|+|||.++.++||+|++||+|.|+++.   ++|||.|+.+|+.|+||++||+.+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   68 (71)
T 2cre_A            6 SGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILSGP   68 (71)
T ss_dssp             CCEEEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEESSSCCEEEETTTEEECCCS
T ss_pred             CcEEEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEECCCEEEEehHHEEECCCC
Confidence            346899999999999999999999999999997   899999999999999999999988643

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.49  E-value=5.4e-14  Score=102.54  Aligned_cols=57  Identities=16%  Similarity=0.368  Sum_probs=52.0

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEec--CCCeeEEEeCCeeEEEEeeeeec
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~--~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      ....+|+|+|||.++.++||+|++||+|.|+++.  ++|||.|+++|+.|+||++||+.
T Consensus         4 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~   62 (64)
T 2jte_A            4 GAKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQ   62 (64)
T ss_dssp             CSSEEEEESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEETTEEEEEEGGGEEE
T ss_pred             CCCEEEEECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEEECCeEEEEeHHHEEE
Confidence            3467899999999999999999999999999985  68999999999999999988874

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=5.2e-14  Score=103.96  Aligned_cols=59  Identities=24%  Similarity=0.416  Sum_probs=54.5

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      .....|+|+|||.++.++||+|++||+|.|+++.+++||.|+++|+.|+||+.||+...
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (68)
T 1x2p_A            5 SSGEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHS   63 (68)
T ss_dssp             CSCCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECTTCCEEEESSSEECCC
T ss_pred             CCCCEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCeEEEEehHHeEECC
Confidence            45678999999999999999999999999999988999999999999999999998653

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.49  E-value=6.8e-14  Score=106.78  Aligned_cols=59  Identities=24%  Similarity=0.388  Sum_probs=54.8

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCC-eEEEEECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD-WWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~-w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++..+||+|++||+|.|+++.+++ ||.|+.+|+.|+||++||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   69 (80)
T 2i0n_A           10 AKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSD   69 (80)
T ss_dssp             CCEEEESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEETTEEEEEEGGGEEEESSC
T ss_pred             CeEEEECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEECCCC
Confidence            45899999999999999999999999999998877 999999999999999999988654

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.49  E-value=6.4e-14  Score=99.90  Aligned_cols=55  Identities=33%  Similarity=0.612  Sum_probs=52.0

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEE
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL  193 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~  193 (518)
                      ...++|+|||.++.++||+|++||+|.|++..++|||.|+.+|+.|+||++||+.
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            3 VKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE   57 (58)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             cEEEEECccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEEECCCEEEEehHHEEe
Confidence            3579999999999999999999999999999889999999999999999999974

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.49  E-value=5.8e-14  Score=107.41  Aligned_cols=59  Identities=24%  Similarity=0.572  Sum_probs=55.1

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++.++||+|++||+|.|++..++|||.|+.+|+.|+||++||+.+...
T Consensus        17 ~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   75 (83)
T 1neg_A           17 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLAAA   75 (83)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCTT
T ss_pred             ceEEEEccccCCCCCCccccCCCCEEEEEEecCCCEEEEEECCeEEEEEHHHEEECCCC
Confidence            45899999999999999999999999999998899999999999999999999988643

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.49  E-value=6.4e-14  Score=104.14  Aligned_cols=59  Identities=25%  Similarity=0.541  Sum_probs=54.5

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecC--CCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++.++||+|++||+|.|+++.  ++|||.|+.+|+.|+||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2da9_A            7 GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLSGP   67 (70)
T ss_dssp             SEEEEECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEECSSCEEEEEGGGEEECCCC
T ss_pred             CcEEEECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEECCcEEEechHHeEECCCC
Confidence            46899999999999999999999999999985  789999999999999999999988643

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=5.8e-14  Score=107.02  Aligned_cols=61  Identities=21%  Similarity=0.478  Sum_probs=55.7

Q ss_pred             CccCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            2 DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         2 d~~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      +++....|+|+|||.++.++||+|++||+|.|+++.+++||.|+++|+.|+||++||+...
T Consensus        13 ~~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   73 (79)
T 1x69_A           13 ENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVELRQ   73 (79)
T ss_dssp             CCCCCCCEEESSCCCCSSSSBCCCCTTCEEEEEEECSSSEEEEEETTEEEEEETTSEEECC
T ss_pred             CCCCCeEEEECccCCCCCCCCcCcCCCCEEEEeEecCCCeEEEEECCcEEEechHHEEECC
Confidence            3456778999999999999999999999999999989999999999999999999998654

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.49  E-value=5.5e-14  Score=103.79  Aligned_cols=56  Identities=23%  Similarity=0.447  Sum_probs=51.9

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECC-----eeEEEcCCCEEEc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-----ASGWFPSAFVRLR  194 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g-----~~G~~P~~~v~~~  194 (518)
                      ...++|+|||.++.++||+|++||+|.|+++.++|||.|+..|     +.|+||++||+.+
T Consensus         7 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            7 PFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             SEEEEESSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             CEEEEECeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            4689999999999999999999999999999999999999655     9999999999875

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=5.8e-14  Score=105.23  Aligned_cols=59  Identities=34%  Similarity=0.670  Sum_probs=53.9

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecC--CCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++..+||+|++||+|.|+++.  ++|||.|+.+|+.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   67 (73)
T 2dm1_A            7 GGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGIQ   67 (73)
T ss_dssp             SSEEEESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEETTEEEEECSSSEEECCCC
T ss_pred             CCEEEECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEECCeEEEeehHHEEEcCCC
Confidence            35799999999999999999999999999987  459999999999999999999987643

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.49  E-value=3.5e-14  Score=100.95  Aligned_cols=55  Identities=24%  Similarity=0.571  Sum_probs=51.2

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~  194 (518)
                      ..++|+|||.++.++||+|++||+|.|++..++|||.|+ .+|+.|+||++||+.+
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   57 (57)
T 1cka_A            2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY   57 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC-
T ss_pred             cEEEECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeCCCCEEEEeHHHEEEC
Confidence            368999999999999999999999999999889999999 8999999999999864

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.49  E-value=7.9e-14  Score=104.55  Aligned_cols=58  Identities=31%  Similarity=0.646  Sum_probs=54.7

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ..+++|+|||.++..+||+|++||+|.|+++.++|||.|+.+|+.||||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (73)
T 2dbm_A            7 GPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVA   64 (73)
T ss_dssp             CCEEEESSCBCCCSTTCCCBCTTCEEECCBCSSSSEEEEEETTEEEEEESSSEEESSC
T ss_pred             CCEEEEccccCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEEccC
Confidence            3589999999999999999999999999999899999999999999999999998864

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.49  E-value=6.1e-14  Score=105.09  Aligned_cols=58  Identities=22%  Similarity=0.359  Sum_probs=53.7

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ....+|+|+|||.++.++||+|++||+|.|+++.++|||.|+++|+.|+||++||+..
T Consensus        11 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~   68 (73)
T 3c0c_A           11 LDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVL   68 (73)
T ss_dssp             CCSCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEE
T ss_pred             CCCeEEEECccCCCCCCCCccCcCCCEEEEEEecCCCEEEEEECCCEEEeChHHEEEC
Confidence            3457899999999999999999999999999998999999999999999999998854

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.49  E-value=5.6e-14  Score=101.00  Aligned_cols=54  Identities=28%  Similarity=0.479  Sum_probs=50.5

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEec--CCCeeEEEeCCeeEEEEeeeee
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEAFEHLSQIIIN   59 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~--~~~Ww~g~~~~~~g~~p~~~v~   59 (518)
                      ...|+|+|||.++.++||+|++||+|.|+++.  ++|||.|+++|+.|+||+.||+
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~   58 (60)
T 1oot_A            3 SPKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE   58 (60)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEE
T ss_pred             ccEEEECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEECCEEEEEeHHHEE
Confidence            46799999999999999999999999999987  6899999999999999998886

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.49  E-value=6.8e-14  Score=102.03  Aligned_cols=57  Identities=23%  Similarity=0.422  Sum_probs=53.0

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ...+++|+|||.++.++||+|++||+|.|+++.++|||.|+++|+.|+||+.||+..
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   61 (64)
T 2ak5_A            5 SQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVREI   61 (64)
T ss_dssp             CCCEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CCEEEEEccccCCcCcCcccCCCCCEEEEeEecCCCEEEEEECCCEEEEehHHeEEc
Confidence            456899999999999999999999999999998999999999999999999988754

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.49  E-value=8.7e-14  Score=106.18  Aligned_cols=57  Identities=18%  Similarity=0.231  Sum_probs=52.9

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCC-eeEEEeCCeeEEEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD-WWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~-Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ...+|+|+|||.++.++||+|++||+|.|+++.+++ ||.|+++|+.|+||++||+..
T Consensus         9 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~   66 (80)
T 2i0n_A            9 FAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEIL   66 (80)
T ss_dssp             CCCEEEESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEETTEEEEEEGGGEEEE
T ss_pred             CCeEEEECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEECCcEEEechHHEEEC
Confidence            457899999999999999999999999999998877 999999999999999999864

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.48  E-value=6e-14  Score=100.12  Aligned_cols=54  Identities=31%  Similarity=0.593  Sum_probs=50.9

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      .+|+|+|||.++.++||+|++||+|.|+++.+++||.|+++|+.|+||+.||+.
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   56 (58)
T 2vwf_A            3 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTA   56 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             eEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEECCcEEEEchHHeEE
Confidence            579999999999999999999999999999889999999999999999988864

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.3e-13  Score=107.39  Aligned_cols=60  Identities=27%  Similarity=0.556  Sum_probs=55.0

Q ss_pred             ccCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         3 ~~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ......|+|+|||.++.++||+|++||+|.|+++.++|||.|++.|+.|+||.+||+...
T Consensus        14 ~~~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   73 (88)
T 1x2q_A           14 NKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNL   73 (88)
T ss_dssp             CCCCEEEEESSCCCCCSSSCCCCCSSCEEEEEECSCSSSEEEEETTEEEEECGGGEESCS
T ss_pred             CCCCeEEEEcccCCCCCcCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcC
Confidence            345678999999999999999999999999999988999999999999999999998543

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.48  E-value=7.7e-14  Score=103.10  Aligned_cols=59  Identities=20%  Similarity=0.325  Sum_probs=54.3

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      .....++|+|||.++.++||+|++||+|.|+++.+++||.|+.+|+.|+||+.||+...
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   63 (68)
T 2dl3_A            5 SSGRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYIELLS   63 (68)
T ss_dssp             CCSEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEECSSCEEEEETTTEEECC
T ss_pred             CCCcEEEECccCCCCCcCCccCCCCCEEEEeEecCCCEEEEEECCCEEEEchHHEEECC
Confidence            34678999999999999999999999999999988999999999999999999988654

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=1.6e-13  Score=104.77  Aligned_cols=59  Identities=17%  Similarity=0.233  Sum_probs=54.2

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSIS   63 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~   63 (518)
                      ....++|+|||.++.++||+|++||+|.|+++.++|||.|+++|+.|+||++||+....
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   65 (80)
T 2ekh_A            7 GATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDEN   65 (80)
T ss_dssp             SCEEEEECSCBCCSSTTSCCBCTTCEEEEEEECTTSEEEEEETTEEEEEETTTEECCCC
T ss_pred             CCCEEEECCCCCCCCCCccCcCCCCEEEEEEeCCCCeEEEEECCCEEEEEhHHeEECCC
Confidence            35689999999999999999999999999999999999999999999999999986543

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.48  E-value=3.2e-14  Score=106.30  Aligned_cols=59  Identities=25%  Similarity=0.429  Sum_probs=53.9

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEec-CCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDT-LDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~-~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++..+||+|++||+|.|+.+ .++|||.|+.+|+.|+||++||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   69 (72)
T 1ugv_A           10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             ccEEEEccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEEECCcEEEecHHHEEECCCC
Confidence            3579999999999999999999999999884 6789999999999999999999988654

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.48  E-value=5.7e-14  Score=98.56  Aligned_cols=52  Identities=21%  Similarity=0.336  Sum_probs=48.6

Q ss_pred             EEEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEEeCCeeEEEEeeeee
Q psy824            8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRGEAFEHLSQIIIN   59 (518)
Q Consensus         8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~~~~g~~p~~~v~   59 (518)
                      .|+|+|||.++.++||+|++||+|.|+++.+ +|||.|+++|+.|+||+.||+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEETTEEEEEEGGGBC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEECCeEEEeeHHHcC
Confidence            5899999999999999999999999999986 799999999999999988874

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.48  E-value=6.4e-14  Score=101.05  Aligned_cols=56  Identities=30%  Similarity=0.672  Sum_probs=52.4

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeE-EEcCCCEEEcc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASG-WFPSAFVRLRV  195 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G-~~P~~~v~~~~  195 (518)
                      ..++|+|||.++.++||+|++||+|.|++..++|||.|+.+|+.| +||++||+.+.
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~gG~~P~~yv~~~~   60 (61)
T 1y0m_A            4 SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEMI   60 (61)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEEGGGEEECC
T ss_pred             CEEEECcCCCcCCCCCcCCcCCCEEEEEEecCCCEEEEEECCeEEEEEChHHcEECC
Confidence            468999999999999999999999999999899999999999887 99999999874

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=1.5e-13  Score=104.93  Aligned_cols=59  Identities=25%  Similarity=0.536  Sum_probs=55.1

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++.++||+|++||+|.|+++.++|||.|+.+|+.||||++||+.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   66 (80)
T 2ekh_A            8 ATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENE   66 (80)
T ss_dssp             CEEEEECSCBCCSSTTSCCBCTTCEEEEEEECTTSEEEEEETTEEEEEETTTEECCCCC
T ss_pred             CCEEEECCCCCCCCCCccCcCCCCEEEEEEeCCCCeEEEEECCCEEEEEhHHeEECCCC
Confidence            35789999999999999999999999999999999999999999999999999988654

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.48  E-value=7.5e-14  Score=101.17  Aligned_cols=55  Identities=24%  Similarity=0.570  Sum_probs=52.7

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      ..++|+|||.++..+||+|++||+|.|++..+++||.|+.+|+.|+||++||+.+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            7 ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYLKKL   61 (62)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCCCCCCCccCCCCCEEEEeEecCCCeEEEEECCEEEEEEHHHEEEC
Confidence            5799999999999999999999999999999999999999999999999999876

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.48  E-value=5.2e-14  Score=103.11  Aligned_cols=57  Identities=26%  Similarity=0.633  Sum_probs=53.4

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV  195 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~  195 (518)
                      ...++|+|||.++..+||+|++||+|.|+++.++|||.|+.+|+.|+||++||+.+.
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   63 (65)
T 3u23_A            7 KRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELE   63 (65)
T ss_dssp             -CEEEECSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEECC
T ss_pred             CeEEEEeeeeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCCEEEeehHHEEECc
Confidence            357999999999999999999999999999988999999999999999999999874

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.48  E-value=5e-14  Score=100.11  Aligned_cols=54  Identities=19%  Similarity=0.455  Sum_probs=50.1

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE-eCCeeEEEEeeeeec
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEAFEHLSQIIINH   60 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~-~~~~~g~~p~~~v~~   60 (518)
                      .+++|+|||.++.++||+|++||+|.|+++.++|||.|+ .+|+.|+||++||+.
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~   56 (57)
T 1cka_A            2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             cEEEECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeCCCCEEEEeHHHEEE
Confidence            479999999999999999999999999999889999999 788889999988863

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.48  E-value=6.8e-14  Score=104.76  Aligned_cols=58  Identities=34%  Similarity=0.615  Sum_probs=54.1

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.++..+||+|++||+|.|+++.++|||.|+.+|+.|+||.+||+.+..
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   70 (72)
T 4glm_A           13 LTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLCPA   70 (72)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSTTEEEEEETTEEEEEEGGGEEEEC-
T ss_pred             CeEEEECccCCCCCCCcCCCCCCCEEEEEEccCCCEEEEEECCcEEEEChHHeEECCC
Confidence            4579999999999999999999999999999999999999999999999999998753

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.48  E-value=8.3e-14  Score=106.53  Aligned_cols=58  Identities=17%  Similarity=0.380  Sum_probs=53.0

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      .....|+|+|||.|+.++||+|++||+|.|+++.++|||.|+.+|+.|+||++||+..
T Consensus        15 ~~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~   72 (83)
T 1neg_A           15 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL   72 (83)
T ss_dssp             --CCEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CCceEEEEccccCCCCCCccccCCCCEEEEEEecCCCEEEEEECCeEEEEEHHHEEEC
Confidence            4467899999999999999999999999999998899999999999999999999864

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.48  E-value=6.1e-14  Score=102.68  Aligned_cols=56  Identities=21%  Similarity=0.479  Sum_probs=52.4

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      ....|+|+|||.++.++||+|++||+|.|+++.+++||.|+.+|+.|+||++||+.
T Consensus         8 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   63 (65)
T 3ulr_B            8 LGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYVEL   63 (65)
T ss_dssp             CCSCEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             CceEEEEEeeECCCCcCEeeEecCCEEEEEEecCCCEEEEEECCcEEEEehHHeEE
Confidence            45679999999999999999999999999999889999999999999999998874

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.48  E-value=7e-14  Score=100.83  Aligned_cols=57  Identities=23%  Similarity=0.472  Sum_probs=52.0

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeE-EEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFE-HLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g-~~p~~~v~~~   61 (518)
                      +...|+|+|||.++.++||+|++||+|.|+++.++|||.|+++|+.| +||++||+..
T Consensus         2 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~gG~~P~~yv~~~   59 (61)
T 1y0m_A            2 FKSAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYVEEM   59 (61)
T ss_dssp             CCCCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEEGGGEEEC
T ss_pred             CCCEEEECcCCCcCCCCCcCCcCCCEEEEEEecCCCEEEEEECCeEEEEEChHHcEEC
Confidence            34679999999999999999999999999999889999999999886 9999998753

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.48  E-value=3.6e-14  Score=105.35  Aligned_cols=55  Identities=31%  Similarity=0.585  Sum_probs=51.8

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeee
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIIN   59 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~   59 (518)
                      ....|+|+|||.++.++||+|++||+|.|+++.++|||.|+++|+.|+||++||+
T Consensus        16 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~fP~~yV~   70 (72)
T 2l0a_A           16 EARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPSNFVT   70 (72)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEECSSCEEECTTCCEE
T ss_pred             CCeEEEECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCEEEechhhCc
Confidence            3578999999999999999999999999999988999999999999999998886

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.48  E-value=8.8e-14  Score=103.73  Aligned_cols=60  Identities=22%  Similarity=0.527  Sum_probs=54.8

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEec--CCCCeEEEE-ECCeeEEEcCCCEEEcccC
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDT--LDRDWWWGT-RGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~--~~~~w~~~~-~~g~~G~~P~~~v~~~~~~  197 (518)
                      ....++|+|||.+...+||+|++||+|.|+++  .++|||.|+ .+|+.|+||++||+.+...
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   67 (71)
T 1u5s_A            5 VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG   67 (71)
T ss_dssp             SSSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCS
T ss_pred             ccEEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeCCCCEEEEeHHHEEECCCC
Confidence            34689999999999999999999999999998  689999998 8999999999999988653

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.48  E-value=7.7e-14  Score=104.70  Aligned_cols=56  Identities=29%  Similarity=0.643  Sum_probs=52.8

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE--CCeeEEEcCCCEEEc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRLR  194 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~  194 (518)
                      ...++|+|||.++..+||+|++||+|.|+++.+++||.|+.  +|+.|+||++||+.+
T Consensus        15 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   72 (73)
T 3h0h_A           15 VTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   72 (73)
T ss_dssp             TCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEEC
Confidence            46889999999999999999999999999999999999997  899999999999876

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.47  E-value=1e-13  Score=103.62  Aligned_cols=58  Identities=22%  Similarity=0.398  Sum_probs=53.9

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE--CCeeEEEcCCCEEEcccC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~  197 (518)
                      ..++|+|||.++.++||+|++||+|.|+++.++|||.|+.  +|+.|+||++||+.+...
T Consensus         6 ~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~~~~   65 (73)
T 2lcs_A            6 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQPE   65 (73)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEECCSS
T ss_pred             CEEEECccCCCCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEECCCC
Confidence            5799999999999999999999999999999999999996  499999999999988654

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.47  E-value=9.3e-14  Score=105.86  Aligned_cols=58  Identities=26%  Similarity=0.496  Sum_probs=53.7

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCC----CCeEEEEECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD----RDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~----~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.++..+||+|++||+|.|+++.+    +|||.|+.+|+.|+||++||+.+..
T Consensus        13 ~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   74 (79)
T 1uhc_A           13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTES   74 (79)
T ss_dssp             SCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             CeEEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEeCCCEEEEchHHeEECCC
Confidence            347899999999999999999999999999876    8999999999999999999998754

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=9.8e-14  Score=104.01  Aligned_cols=59  Identities=20%  Similarity=0.416  Sum_probs=53.5

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEe---cCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDT---LDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~---~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ....+|+|+|||.++.++||+|++||+|.|+++   .++|||.|+++|+.|+||++||+...
T Consensus         6 ~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   67 (73)
T 2dl7_A            6 SGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELS   67 (73)
T ss_dssp             CCCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEETTEEEEECSSSEEECC
T ss_pred             CCCEEEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEECCCEEEEChHHEEECC
Confidence            346789999999999999999999999999998   47899999999999999999998653

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=9.6e-14  Score=105.71  Aligned_cols=59  Identities=29%  Similarity=0.586  Sum_probs=54.4

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE--CCeeEEEcCCCEEEcccC
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~  197 (518)
                      ....++|+|||.++.++||+|++||+|.|++. ++|||.|+.  +|+.||||++||+.+...
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g~~G~fP~~yv~~~~~~   76 (79)
T 1x6b_A           16 DLPQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFISGP   76 (79)
T ss_dssp             SCCEEEESSCCCCCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTCCEEEECGGGCEEEESS
T ss_pred             CCCEEEECeeECCCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEchHHEEECCCC
Confidence            34689999999999999999999999999999 899999997  999999999999988653

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.47  E-value=7.9e-14  Score=100.87  Aligned_cols=56  Identities=39%  Similarity=0.755  Sum_probs=52.6

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      ...++|+|||.++.++||+|++||+|.|++..++|||.|+..|+.|+||++||++.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   60 (62)
T 1uj0_A            5 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTTD   60 (62)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEESC
T ss_pred             CeEEEECccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEEECCCEEEechhHEEEe
Confidence            46899999999999999999999999999998999999999999999999999853

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1.6e-13  Score=106.79  Aligned_cols=60  Identities=25%  Similarity=0.547  Sum_probs=55.9

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ....++|+|||.++..+||+|++||+|.|+++.+++||.|+.+|+.||||.+||+.+...
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   75 (88)
T 2cub_A           16 LNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEGDS   75 (88)
T ss_dssp             CCEEEEESSCCCCCSTTBCCCCTTEEEEEEEECTTSEEEEEETTEEEEEEGGGEEECCCC
T ss_pred             CCCEEEEccccCCCCCCCcCCCCCCEEEEEEccCCCeEEEEECCcEEEEehHHEEECCCc
Confidence            346899999999999999999999999999999999999999999999999999988654

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=5.8e-14  Score=107.35  Aligned_cols=59  Identities=29%  Similarity=0.596  Sum_probs=54.3

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCC--CCeEEEEECCeeEEEcCCCEEEccc
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~--~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ....++|+|||.++..+||+|++||+|.|+++.+  +|||.|+.+|+.||||.+||+.+..
T Consensus        16 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   76 (80)
T 2d8h_A           16 QPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNSG   76 (80)
T ss_dssp             SCEEEECSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             CCEEEEECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEECCEEEEEchhHeEEcCC
Confidence            4568999999999999999999999999999875  8999999999999999999997754

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.47  E-value=6e-14  Score=101.54  Aligned_cols=56  Identities=21%  Similarity=0.305  Sum_probs=52.3

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE--ECCeeEEEcCCCEEEcc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRV  195 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~  195 (518)
                      ..++|+|+|.++.++||+|++||+|.|++..++|||.|+  .+|+.|+||++||+.+.
T Consensus         4 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~~   61 (62)
T 2fpe_A            4 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT   61 (62)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CEEEECccCCccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEECc
Confidence            368999999999999999999999999999999999999  68999999999999864

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.47  E-value=5.4e-14  Score=104.82  Aligned_cols=58  Identities=21%  Similarity=0.305  Sum_probs=53.2

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE--ECCeeEEEcCCCEEEcccC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~~  197 (518)
                      ..++|+|+|.++..+||+|++||+|.|+...++|||.|+  .+|+.|+||++||+.+...
T Consensus         7 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~~~~   66 (71)
T 2fpf_A            7 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVTKE   66 (71)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEECC--
T ss_pred             eEEEECeeECccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEECCCC
Confidence            468999999999999999999999999999999999999  7899999999999988654

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.47  E-value=9.2e-14  Score=104.12  Aligned_cols=58  Identities=33%  Similarity=0.666  Sum_probs=54.7

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.++..+||+|++||+|.|+++.++|||.|+.+|+.|+||++||+.+.+
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   70 (73)
T 3c0c_A           13 QPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLVP   70 (73)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEEC
T ss_pred             CeEEEECccCCCCCCCCccCcCCCEEEEEEecCCCEEEEEECCCEEEeChHHEEECCC
Confidence            3589999999999999999999999999999899999999999999999999998864

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.47  E-value=1.4e-13  Score=102.70  Aligned_cols=59  Identities=25%  Similarity=0.500  Sum_probs=54.7

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecC-CCCeEEEEE--CCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL-DRDWWWGTR--GEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~-~~~w~~~~~--~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++.++||+|++||+|.|++.. ++|||.|+.  +|+.|+||.+||+.+...
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (71)
T 2jt4_A            6 KKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVRDK   67 (71)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEETTTS
T ss_pred             CCEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEECCCc
Confidence            46899999999999999999999999999987 899999997  999999999999988654

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=9.4e-14  Score=104.92  Aligned_cols=59  Identities=29%  Similarity=0.465  Sum_probs=54.3

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      +....|+|+|||.++.++||+|++||+|.|+++.+++||.|+++|+.|+||.+||+...
T Consensus         8 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (76)
T 2epd_A            8 EGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPA   66 (76)
T ss_dssp             SCCEEEEESSCEECSSTTBCEECTTCEEEEEEEEETTEEEEEETTEEEEEESSSEECCS
T ss_pred             CCCEEEEECcCCCCCCCCccCCCCCCEEEEEEeCCCCEEEEEECCcEEEEehHHEEEcC
Confidence            34578999999999999999999999999999988999999999999999999998653

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.47  E-value=8.9e-14  Score=102.37  Aligned_cols=57  Identities=21%  Similarity=0.318  Sum_probs=52.5

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCC--eeEEEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE--AFEHLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~--~~g~~p~~~v~~~   61 (518)
                      ....|+|+|||.++.++||+|++||+|.|+++.++|||.|++.+  +.|+||++||+..
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   63 (67)
T 2o9s_A            5 FTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVI   63 (67)
T ss_dssp             TSEEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEE
T ss_pred             CCEEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEEC
Confidence            45689999999999999999999999999999889999999987  8899999998854

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.3e-13  Score=109.30  Aligned_cols=63  Identities=21%  Similarity=0.345  Sum_probs=55.5

Q ss_pred             ceeEEEEeecCCCC--------CCCCCCCCCCCEEEEEec-CCCCeEEEEECCeeEEEcCCCEEEcccCCCc
Q psy824          138 FVVLAEAVWDHVAM--------EAEELGFRAGDVIEVLDT-LDRDWWWGTRGEASGWFPSAFVRLRVSQEDT  200 (518)
Q Consensus       138 ~~~~~~a~~~~~~~--------~~~eL~~~~g~~i~v~~~-~~~~w~~~~~~g~~G~~P~~~v~~~~~~~~~  200 (518)
                      ...+++|+|||.++        ..+||+|++||+|.|+.+ .++|||.|+.+|+.||||++||+.+......
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~~   87 (97)
T 2csq_A           16 PARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQADDEE   87 (97)
T ss_dssp             CCEEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEETTEEEEEETTTSEECCCCSCC
T ss_pred             CceEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEECCcEEEEehHHeEECCCCchh
Confidence            35689999999999        789999999999999965 4578999999999999999999998765443

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1.1e-13  Score=108.19  Aligned_cols=60  Identities=23%  Similarity=0.395  Sum_probs=55.2

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEEC--CeeEEEcCCCEEEcccC
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~~~~  197 (518)
                      ....++|+|||.++..+||+|++||+|.|++..++|||.|+..  |+.||||.+||+.+...
T Consensus        16 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~~~   77 (90)
T 2yup_A           16 EYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREP   77 (90)
T ss_dssp             GSEEEEECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEEECC
T ss_pred             cceEEEEeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEcCCC
Confidence            3468999999999999999999999999999989999999976  99999999999998754

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.47  E-value=1.1e-13  Score=102.92  Aligned_cols=59  Identities=15%  Similarity=0.308  Sum_probs=53.6

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEec--CCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~--~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ....+|+|+|||.++.++||+|++||+|.|+++.  ++|||.|+++|+.|+||+.||+...
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   65 (70)
T 2da9_A            5 SSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLS   65 (70)
T ss_dssp             CSSEEEEECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEECSSCEEEEEGGGEEECC
T ss_pred             CCCcEEEECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEECCcEEEechHHeEECC
Confidence            3457899999999999999999999999999985  7899999999999999999998653

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.47  E-value=8.3e-14  Score=103.20  Aligned_cols=59  Identities=27%  Similarity=0.470  Sum_probs=53.9

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCee-EEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS-GWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~-G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++.++||+|++||+|.|+++.++|||.|+..+.. ||||++||+.+...
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~~P~~yv~~~~~~   66 (69)
T 2eqi_A            7 GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISGP   66 (69)
T ss_dssp             CCEEEESSCBCCCSSSCCCBCTTCEEESCCCCSSSCEEEEETTEEEEEECGGGEEECCSC
T ss_pred             CcEEEECeeECCCCcCccCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEchHHcEECccC
Confidence            357999999999999999999999999999988999999987776 99999999988654

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.47  E-value=5.7e-14  Score=102.74  Aligned_cols=58  Identities=19%  Similarity=0.397  Sum_probs=50.7

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE-eCCeeEEEEeeeeeccCC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEAFEHLSQIIINHSIS   63 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~-~~~~~g~~p~~~v~~~~~   63 (518)
                      ...+|+|+|||.|+.++||+|++||+|.|+++ ++|||.|+ .+|+.|+||++||+....
T Consensus         3 ~~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~-~~~Ww~~~~~~g~~G~~Psnyv~~~~~   61 (67)
T 2b86_A            3 EEVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVERKLE   61 (67)
T ss_dssp             CCEEEEESSCBCCSSTTSCCBCTTCEEEEEEC-SSSSCEEECTTSCEEECCCCSEEEC--
T ss_pred             CCeEEEEeeeECCCCCCccccCCCCEEEEEec-CCCeEEEEeCCCCEEEeChHHEeEcCC
Confidence            34679999999999999999999999999998 57999999 578889999999986543

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.47  E-value=1e-13  Score=103.95  Aligned_cols=58  Identities=21%  Similarity=0.385  Sum_probs=53.7

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ...+|+|+|||.++.++||+|++||+|.|+++.+++||.|+++|+.|+||++||+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (73)
T 2dbm_A            6 SGPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILV   63 (73)
T ss_dssp             CCCEEEESSCBCCCSTTCCCBCTTCEEECCBCSSSSEEEEEETTEEEEEESSSEEESS
T ss_pred             CCCEEEEccccCCCCCCCccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEEcc
Confidence            3568999999999999999999999999999989999999999999999999998653

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.46  E-value=3.3e-14  Score=105.05  Aligned_cols=58  Identities=26%  Similarity=0.613  Sum_probs=54.3

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ..++|+|||.++.++||+|++||+|.|++..++|||.|+.+|+.|+||++||+.+...
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wi7_A            8 RRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGP   65 (68)
T ss_dssp             CCEEESSCBCCSSTTBCCBCTTCEECCCEEEETTEEEECSTTCCEEEETTSEEECCSS
T ss_pred             CEEEECccCCcCCCCCccCcCCCEEEEEEcCCCCeEEEEECCcEEEEchHHEEECCCC
Confidence            5789999999999999999999999999998899999999999999999999988653

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.46  E-value=5.2e-14  Score=100.44  Aligned_cols=53  Identities=13%  Similarity=0.198  Sum_probs=49.0

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEEe--CCeeEEEEeeeee
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTR--GEAFEHLSQIIIN   59 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~--~~~~g~~p~~~v~   59 (518)
                      +.|+|+|||.++.++||+|++||+|.|+++.+ +|||.|++  +|+.|+||++||+
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~   57 (58)
T 1zuu_A            2 MENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   57 (58)
T ss_dssp             -CCEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             CEEEEeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEE
Confidence            56899999999999999999999999999987 79999999  8999999998875

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.46  E-value=1e-13  Score=103.98  Aligned_cols=58  Identities=17%  Similarity=0.358  Sum_probs=53.3

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ....|+|+|||.++.++||+|++||+|.|+++.+++||.|+.+|+.|+||++||+...
T Consensus         4 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   61 (73)
T 3thk_A            4 GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD   61 (73)
T ss_dssp             -CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             CCEEEEECcCCCcCCCCccCCCCCCEEEEEECCCCCeEEEEECCcEEEEehHHeEECC
Confidence            4568999999999999999999999999999988999999999999999999998643

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.46  E-value=8.8e-14  Score=101.67  Aligned_cols=56  Identities=23%  Similarity=0.416  Sum_probs=52.4

Q ss_pred             eEEEEeecCCC-CCCCCCCCCCCCEEEEEecCCCCeEEEE--ECCeeEEEcCCCEEEcc
Q psy824          140 VLAEAVWDHVA-MEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRV  195 (518)
Q Consensus       140 ~~~~a~~~~~~-~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~  195 (518)
                      ..++|+|||.+ +.++||+|++||+|.|++..++|||.|+  .+|+.|+||++||+.+.
T Consensus         6 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   64 (65)
T 2j05_A            6 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVG   64 (65)
T ss_dssp             CEEEESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             cEEEEccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEECc
Confidence            47899999999 9999999999999999999899999999  68999999999999763

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.46  E-value=7.3e-14  Score=102.47  Aligned_cols=56  Identities=27%  Similarity=0.629  Sum_probs=50.3

Q ss_pred             eeEEEEeecCCCCCCC-CCCCCCCCEEEEEecCC-----CCeEEEEE-CCeeEEEcCCCEEEc
Q psy824          139 VVLAEAVWDHVAMEAE-ELGFRAGDVIEVLDTLD-----RDWWWGTR-GEASGWFPSAFVRLR  194 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~-eL~~~~g~~i~v~~~~~-----~~w~~~~~-~g~~G~~P~~~v~~~  194 (518)
                      ...++|+|+|.|+.++ ||+|++||+|.|+++.+     +|||.|+. +|+.|+||++||+.+
T Consensus         7 ~~~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            7 HHFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   69 (69)
T ss_dssp             --CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEEEC
T ss_pred             eeEEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEEEC
Confidence            3578999999999999 99999999999999875     49999997 899999999999864

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.46  E-value=1.2e-13  Score=99.33  Aligned_cols=55  Identities=27%  Similarity=0.546  Sum_probs=51.4

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEec-CCCCeEEEEE--CCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDT-LDRDWWWGTR--GEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~-~~~~w~~~~~--~g~~G~~P~~~v~~~  194 (518)
                      ..++|+|||.++.++||+|++||+|.|++. .++|||.|+.  +|+.|+||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            3 ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            478999999999999999999999999998 4899999997  999999999999864

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.9e-13  Score=106.33  Aligned_cols=58  Identities=16%  Similarity=0.323  Sum_probs=54.0

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ..+.|+|+|||.++.++||+|++||+|.|+++.+++||.|+++|+.|+||.+||+...
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~   73 (88)
T 2cub_A           16 LNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVTEEG   73 (88)
T ss_dssp             CCEEEEESSCCCCCSTTBCCCCTTEEEEEEEECTTSEEEEEETTEEEEEEGGGEEECC
T ss_pred             CCCEEEEccccCCCCCCCcCCCCCCEEEEEEccCCCeEEEEECCcEEEEehHHEEECC
Confidence            4578999999999999999999999999999999999999999999999999998654

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=8.2e-14  Score=104.41  Aligned_cols=59  Identities=22%  Similarity=0.433  Sum_probs=53.4

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEec--CCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~--~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ....+|+|+|||.++.++||+|++||+|.|+++.  +++||.|+++|+.|+||..||+...
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   65 (73)
T 2dm1_A            5 SSGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEG   65 (73)
T ss_dssp             CSSSEEEESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEETTEEEEECSSSEEECC
T ss_pred             CCCCEEEECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEECCeEEEeehHHEEEcC
Confidence            4567899999999999999999999999999987  4599999999999999999998643

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.7e-13  Score=104.43  Aligned_cols=59  Identities=27%  Similarity=0.613  Sum_probs=55.3

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|+|.++..+||+|++||+|.|++..++|||.|+.+|+.||||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (79)
T 2yun_A            7 GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSN   65 (79)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSCEEEESSSCEEEECSTTEEEESSC
T ss_pred             CCEEEECccCCcCCCCCcCCCCCCEEEEEEcCCCCEEEEEECCCEEEEEhHHeEECCCC
Confidence            46899999999999999999999999999998899999999999999999999988654

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.46  E-value=7.8e-14  Score=97.85  Aligned_cols=52  Identities=27%  Similarity=0.575  Sum_probs=49.1

Q ss_pred             EEEEeecCCCCCCCCCCCCCCCEEEEEecCC-CCeEEEEECCeeEEEcCCCEE
Q psy824          141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRGEASGWFPSAFVR  192 (518)
Q Consensus       141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~  192 (518)
                      .++|+|||.++.++||+|++||+|.|++..+ +|||.|+.+|+.|+||++||+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEETTEEEEEEGGGBC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEECCeEEEeeHHHcC
Confidence            5789999999999999999999999999985 799999999999999999985

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=8.3e-14  Score=103.93  Aligned_cols=59  Identities=20%  Similarity=0.330  Sum_probs=54.0

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEec---CCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL---DRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~---~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ...++|+|+|||.++.++||+|++||+|.|+++.   ++|||.|+.+|+.|+||+.||+...
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (71)
T 2cre_A            5 SSGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILS   66 (71)
T ss_dssp             CCCEEEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEESSSCCEEEETTTEEECC
T ss_pred             CCcEEEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEECCCEEEEehHHEEECC
Confidence            4567899999999999999999999999999997   8899999999999999999988653

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=9.7e-14  Score=104.48  Aligned_cols=58  Identities=22%  Similarity=0.313  Sum_probs=52.8

Q ss_pred             cCceEEEEecCCCCCC-------CCCcccCCCCEEEEEE-ecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            4 DFVVLAEAVWDHVAME-------AEELGFRAGDVIEVLD-TLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~-------~~eL~~~~gd~i~v~~-~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ....+++|+|||.++.       ++||+|++||+|.|+. ..++|||.|+++|+.|+||++||+..
T Consensus         5 ~~~~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~fP~~yv~~~   70 (75)
T 2ege_A            5 SSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHLLDHM   70 (75)
T ss_dssp             CCSEEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEESSSCEEEEETTTEEEC
T ss_pred             CCCcEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEECCcEEEEChHHeEEc
Confidence            4567899999999999       9999999999999997 47789999999999999999999864

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.46  E-value=1e-13  Score=102.65  Aligned_cols=58  Identities=26%  Similarity=0.519  Sum_probs=54.3

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.++.++||+|++||+|.|+++.+++||.|+.+|+.|+||++||+.+..
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   65 (69)
T 2dil_A            8 AQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLSG   65 (69)
T ss_dssp             CCEEECCSCBCCSSSSSCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             CcEEEECccCCccCcCccCCCCCCEEEEEECCCCCEEEEEECCCEEEEehHHeEEcCC
Confidence            3579999999999999999999999999999889999999999999999999998754

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.8e-13  Score=103.98  Aligned_cols=58  Identities=19%  Similarity=0.352  Sum_probs=53.6

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ....++|+|||.++.++||+|++||+|.|+++.++|||.|+.+|+.|+||.+||+...
T Consensus        16 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~~g~~G~~P~~yv~~~~   73 (78)
T 2ed0_A           16 YLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESIS   73 (78)
T ss_dssp             CSEEEEECSCBCCSSTTBCCBCSSCEEEEEEECSSSEEEEEETTEEEEEETTSEEECS
T ss_pred             cCEEEEECccCCccCcCcccccCCCEEEEEEeCCCCEEEEEECCcEEEeChHHEEEcC
Confidence            3568999999999999999999999999999989999999999999999999998653

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.46  E-value=9.1e-14  Score=101.66  Aligned_cols=57  Identities=26%  Similarity=0.630  Sum_probs=50.9

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEcccC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~  197 (518)
                      ..++|+|||.++.++||+|++||+|.|+++ ++|||.|+ .+|+.|+||++||+.+.+.
T Consensus         5 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~-~~~Ww~~~~~~g~~G~~Psnyv~~~~~~   62 (67)
T 2b86_A            5 VIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVERKLEH   62 (67)
T ss_dssp             EEEEESSCBCCSSTTSCCBCTTCEEEEEEC-SSSSCEEECTTSCEEECCCCSEEEC---
T ss_pred             eEEEEeeeECCCCCCccccCCCCEEEEEec-CCCeEEEEeCCCCEEEeChHHEeEcCCC
Confidence            579999999999999999999999999998 47999999 6899999999999987643

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.46  E-value=1.4e-13  Score=101.29  Aligned_cols=58  Identities=26%  Similarity=0.438  Sum_probs=53.4

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECC--eeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE--ASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g--~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.++..+||+|++||+|.|+++.++|||.|+..+  +.|+||++||+.+..
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   65 (67)
T 2o9s_A            6 TGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR   65 (67)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTTSSCEEEEEGGGEEEEEC
T ss_pred             CEEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCCCCEEEEChHHeEECCC
Confidence            4689999999999999999999999999999889999999755  999999999998753

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.46  E-value=1e-13  Score=104.71  Aligned_cols=58  Identities=24%  Similarity=0.389  Sum_probs=53.3

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCC---eeEEEEeeeeecc
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE---AFEHLSQIIINHS   61 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~---~~g~~p~~~v~~~   61 (518)
                      ....+|+|+|||.++.++||+|++||+|.|+++.++|||.|++.+   +.|+||++||+..
T Consensus         8 ~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~   68 (76)
T 2ed1_A            8 NKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHIL   68 (76)
T ss_dssp             CCCEEEEESSCCCCSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEEC
T ss_pred             CCCeEEEECccCCCCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEEC
Confidence            446789999999999999999999999999998889999999987   7899999999864

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.45  E-value=2.2e-13  Score=106.87  Aligned_cols=61  Identities=21%  Similarity=0.517  Sum_probs=55.9

Q ss_pred             cceeEEEEeecCCCCCCCCCCCCCCCEEEEEec--CCCCeEEEE-ECCeeEEEcCCCEEEcccC
Q psy824          137 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDT--LDRDWWWGT-RGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       137 ~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~--~~~~w~~~~-~~g~~G~~P~~~v~~~~~~  197 (518)
                      .....++|+|||.++..+||+|++||+|.|+++  .++|||.|+ .+|+.||||.+||+.+...
T Consensus        15 ~~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   78 (91)
T 1wx6_A           15 RVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG   78 (91)
T ss_dssp             CCCEEEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECTTCCEEEEEGGGEEEEEES
T ss_pred             CccEEEEEeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeCCCCEEEEchHHEEECCCc
Confidence            345789999999999999999999999999998  678999999 8999999999999998754

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.45  E-value=3.7e-14  Score=104.76  Aligned_cols=59  Identities=19%  Similarity=0.386  Sum_probs=53.9

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSIS   63 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~   63 (518)
                      ...+|+|+|||.++.++||+|++||+|.|+++.+++||.|+++|+.|+||++||+....
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wi7_A            6 SGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSG   64 (68)
T ss_dssp             CCCCEEESSCBCCSSTTBCCBCTTCEECCCEEEETTEEEECSTTCCEEEETTSEEECCS
T ss_pred             CCCEEEECccCCcCCCCCccCcCCCEEEEEEcCCCCeEEEEECCcEEEEchHHEEECCC
Confidence            45689999999999999999999999999999889999999999999999999986543

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.45  E-value=1.3e-13  Score=102.09  Aligned_cols=56  Identities=23%  Similarity=0.405  Sum_probs=52.0

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe-CCeeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEAFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~-~~~~g~~p~~~v~~   60 (518)
                      ....|+|+|||.++.++||+|++||+|.|+++.++|||.|+. +|+.|+||++||+.
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~   61 (69)
T 4esr_A            5 TAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVAS   61 (69)
T ss_dssp             CCCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEEETTEEEEEEGGGEEE
T ss_pred             ccCEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEeCCCCEEEEchHHeEE
Confidence            456799999999999999999999999999998899999998 88999999999874

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.45  E-value=1.1e-13  Score=106.41  Aligned_cols=63  Identities=22%  Similarity=0.296  Sum_probs=53.9

Q ss_pred             CCccCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe--CCeeEEEEeeeeeccCC
Q psy824            1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEAFEHLSQIIINHSIS   63 (518)
Q Consensus         1 ~d~~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~~~~g~~p~~~v~~~~~   63 (518)
                      |.+....+|+|+|||.++.++||+|++||+|.|+++.++|||.|+.  +|+.|+||++||+...+
T Consensus         1 ~~~~~~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   65 (84)
T 4ag1_C            1 MRGSGVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDS   65 (84)
T ss_dssp             -----CCEEEESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEETTT
T ss_pred             CCCCCCEEEEEcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEECCC
Confidence            4566678899999999999999999999999999998899999999  88899999999986543

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.45  E-value=2.7e-13  Score=103.61  Aligned_cols=58  Identities=19%  Similarity=0.245  Sum_probs=52.6

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC-----CeeEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG-----EAFEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~-----~~~g~~p~~~v~~~~   62 (518)
                      ...+|+|+|||.++.++||+|++||+|.|+++.++|||.|++.     ++.|+||++||+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~   68 (80)
T 1ue9_A            6 SGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLG   68 (80)
T ss_dssp             CCEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECC
T ss_pred             CCeEEEECcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEECC
Confidence            4578999999999999999999999999999988999999987     378999999998654

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.45  E-value=3.3e-13  Score=103.18  Aligned_cols=59  Identities=29%  Similarity=0.561  Sum_probs=54.1

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEEC-----CeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG-----EASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~-----g~~G~~P~~~v~~~~~~  197 (518)
                      ..+++|+|||.++..+||+|++||+|.|+++.++|||.|+..     |+.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~~~   70 (80)
T 1ue9_A            7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPS   70 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSC
T ss_pred             CeEEEECcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEECCCC
Confidence            468999999999999999999999999999988999999965     59999999999988654

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.45  E-value=1.5e-13  Score=101.80  Aligned_cols=59  Identities=22%  Similarity=0.334  Sum_probs=53.9

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      .....++|+|||.++.++||+|++||+|.|+++.+++||.|+++|+.|+||++||+...
T Consensus         6 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   64 (69)
T 2dil_A            6 SGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEKLS   64 (69)
T ss_dssp             CCCCEEECCSCBCCSSSSSCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGCCBCC
T ss_pred             CCCcEEEECccCCccCcCccCCCCCCEEEEEECCCCCEEEEEECCCEEEEehHHeEEcC
Confidence            34568999999999999999999999999999988999999999999999999988543

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.45  E-value=1.2e-13  Score=102.94  Aligned_cols=56  Identities=23%  Similarity=0.456  Sum_probs=51.8

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEe-cCCCCeEEEE-ECCeeEEEcCCCEEEc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLD-TLDRDWWWGT-RGEASGWFPSAFVRLR  194 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~-~~~~~w~~~~-~~g~~G~~P~~~v~~~  194 (518)
                      ...++|+|||.++..+||+|++||+|.|++ ..++|||.|+ .+|+.|+||++||+..
T Consensus        11 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   68 (71)
T 1csk_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR   68 (71)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECTTSCEEEEETTSEEC-
T ss_pred             CCEEEEceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeCCCCEEEEehHHeEEc
Confidence            467999999999999999999999999999 6789999999 8999999999999865

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.4e-13  Score=106.41  Aligned_cols=59  Identities=27%  Similarity=0.507  Sum_probs=54.9

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEec--CCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDT--LDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~--~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ..+++|+|||.++..+||+|++||+|.|+..  .++|||.|+.+|+.|+||++||+.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   68 (85)
T 2dlp_A            8 SGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAP   68 (85)
T ss_dssp             CCEEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEESSSCEEEEETTSEEECCCS
T ss_pred             CEEEEECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEEECCEEEEechHHeEECCCc
Confidence            3589999999999999999999999999987  8899999999999999999999998654

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.45  E-value=8.2e-14  Score=102.52  Aligned_cols=55  Identities=27%  Similarity=0.559  Sum_probs=52.3

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~  194 (518)
                      ..++|+|+|.++.++||+|++||+|.|+++.++|||.|+ .+|+.|+||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESS
T ss_pred             eEEEECccCCCCCCCeecCCcCCEEEEEEccCCCcEEEEECCCCEEEEEhHhEEEc
Confidence            368999999999999999999999999999889999999 7999999999999987

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.45  E-value=1.5e-13  Score=103.14  Aligned_cols=58  Identities=24%  Similarity=0.570  Sum_probs=54.4

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ..++|+|||.++..+||+|++||+|.|++..+++||.|+.+|+.||||++||+.+...
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   63 (73)
T 3thk_A            6 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDPA   63 (73)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCC-
T ss_pred             EEEEECcCCCcCCCCccCCCCCCEEEEEECCCCCeEEEEECCcEEEEehHHeEECCCC
Confidence            5899999999999999999999999999998999999999999999999999988654

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.45  E-value=1.1e-13  Score=100.11  Aligned_cols=55  Identities=16%  Similarity=0.161  Sum_probs=50.5

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE--eCCeeEEEEeeeeecc
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEAFEHLSQIIINHS   61 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~--~~~~~g~~p~~~v~~~   61 (518)
                      ..++|+|||.++.++||+|++||+|.|+++.++|||.|+  .+|+.|+||++||+..
T Consensus         4 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~fP~~yv~~~   60 (62)
T 2fpe_A            4 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEV   60 (62)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEECccCCccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCCCEEEechHHEEEC
Confidence            468999999999999999999999999999999999998  5788999999988753

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.45  E-value=1.6e-13  Score=102.55  Aligned_cols=57  Identities=14%  Similarity=0.184  Sum_probs=52.4

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC--CeeEEEEeeeeeccC
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EAFEHLSQIIINHSI   62 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~--~~~g~~p~~~v~~~~   62 (518)
                      ...|+|+|||.++.++||+|++||+|.|+++.++|||.|+..  |+.|+||++||+...
T Consensus         5 ~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~G~~P~~yv~~~~   63 (73)
T 2lcs_A            5 NQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYIQ   63 (73)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEETTTEEEEECTTSSCEEEEESTTEEECC
T ss_pred             CCEEEECccCCCCCCCccCCcCCCEEEEEEEcCCCEEEEEECCCCCEEEeeHHHEEECC
Confidence            468999999999999999999999999999999999999986  788999999998653

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.45  E-value=1.3e-13  Score=102.51  Aligned_cols=59  Identities=25%  Similarity=0.419  Sum_probs=53.7

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECC--eeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE--ASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g--~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++.++||+|++||+|.|++..+++||.|+..+  +.|+||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ecz_A            7 GGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVISGP   67 (70)
T ss_dssp             CBCEEESSCCCCCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEESSSC
T ss_pred             CCEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEECCCC
Confidence            3578999999999999999999999999999889999999765  9999999999988653

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.45  E-value=1.5e-13  Score=102.94  Aligned_cols=58  Identities=24%  Similarity=0.394  Sum_probs=52.9

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ....+++|+|||.++.++||+|++||+|.|+++.++|||.|+++|+.|+||++||+..
T Consensus        11 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~   68 (72)
T 4glm_A           11 GALTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLKGRTGIFPYRFVKLC   68 (72)
T ss_dssp             --CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSTTEEEEEETTEEEEEEGGGEEEE
T ss_pred             CCCeEEEECccCCCCCCCcCCCCCCCEEEEEEccCCCEEEEEECCcEEEEChHHeEEC
Confidence            3456899999999999999999999999999999999999999999999999999854

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.45  E-value=1e-13  Score=103.61  Aligned_cols=59  Identities=29%  Similarity=0.611  Sum_probs=53.6

Q ss_pred             eeEEEEeecCCC-CCCCCCCCCCCCEEEEEec-CCCCeEEEEEC--CeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVA-MEAEELGFRAGDVIEVLDT-LDRDWWWGTRG--EASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~-~~~~eL~~~~g~~i~v~~~-~~~~w~~~~~~--g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.| +.++||+|++||+|.|+++ .++|||.|+..  |+.||||++||+.+...
T Consensus         7 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~~   69 (72)
T 1spk_A            7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSGP   69 (72)
T ss_dssp             SCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSSC
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEECCCC
Confidence            358999999996 8999999999999999987 78999999976  99999999999988653

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.8e-13  Score=103.93  Aligned_cols=61  Identities=21%  Similarity=0.474  Sum_probs=54.8

Q ss_pred             cceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCC-CCeEEEEEC-CeeEEEcCCCEEEcccC
Q psy824          137 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRG-EASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       137 ~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~~~-g~~G~~P~~~v~~~~~~  197 (518)
                      ..+..++|+|||.++..+||+|++||+|.|+++.+ +|||.|+.. |+.||||++||+.+...
T Consensus        11 ~~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   73 (78)
T 2dl5_A           11 NYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPTSS   73 (78)
T ss_dssp             TSSEEEEECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECTTCCEEEEETTTSCCSCCC
T ss_pred             cCCcEEEEceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeCCCCEEEEEhHHEEECCCC
Confidence            34578999999999999999999999999999975 899999965 99999999999987643

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.45  E-value=2.2e-13  Score=102.11  Aligned_cols=57  Identities=16%  Similarity=0.335  Sum_probs=52.8

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEec--CCCeeEEEeCCeeEEEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~--~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ...+|+|+|||.++.++||+|++||+|.|+++.  ++|||.|+++|+.|+||++||+..
T Consensus         8 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   66 (73)
T 2k9g_A            8 SKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLL   66 (73)
T ss_dssp             SCEEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEETTEEEEEEGGGEEEC
T ss_pred             CccEEEECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEEECCeEEEEchHHEEEC
Confidence            357899999999999999999999999999985  789999999999999999999854

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.45  E-value=6.5e-14  Score=103.65  Aligned_cols=58  Identities=33%  Similarity=0.578  Sum_probs=53.7

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++..+||+|++||+|.|+++ ++|||.|+.+|+.|+||++||+.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (69)
T 1uhf_A            8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDSG   65 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCCC
T ss_pred             CCEEEEeeeECCCCcCccCCCCCCEEEEEEe-CCCEEEEEeCCcEEEEchHHeEECCCC
Confidence            4588999999999999999999999999998 789999999999999999999988643

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.8e-13  Score=104.24  Aligned_cols=60  Identities=20%  Similarity=0.454  Sum_probs=54.8

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSIS   63 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~   63 (518)
                      ....+++|+|||.++.++||+|++||+|.|+++.+++||.|+++|+.|+||..||+....
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (79)
T 2yun_A            5 SSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPS   64 (79)
T ss_dssp             CCSEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSCEEEESSSCEEEECSTTEEEESS
T ss_pred             CCCCEEEECccCCcCCCCCcCCCCCCEEEEEEcCCCCEEEEEECCCEEEEEhHHeEECCC
Confidence            456789999999999999999999999999999889999999999999999999986543

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.45  E-value=1.6e-13  Score=103.10  Aligned_cols=58  Identities=29%  Similarity=0.713  Sum_probs=53.7

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++.++||+|++||+|.|++. ++|||.|+.+|+.||||.+||+.+...
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~~   67 (74)
T 1j3t_A           10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECCCS
T ss_pred             CeEEEECCCCCCCCCCccCCCCCCEEEEEec-CCCEEEEEECCcEEEEchHHeEECCCC
Confidence            3589999999999999999999999999998 479999999999999999999998654

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.45  E-value=1.1e-13  Score=104.63  Aligned_cols=59  Identities=32%  Similarity=0.627  Sum_probs=55.0

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ....++|+|||.++..+||+|++||+|.|+++.++|||.|+.+|+.||||++||+.+..
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (76)
T 1ujy_A            9 HQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKS   67 (76)
T ss_dssp             CCEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECCH
T ss_pred             CCEEEEECccCCcCCCCcccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEECCc
Confidence            34689999999999999999999999999999889999999999999999999998753

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.45  E-value=1.6e-13  Score=108.07  Aligned_cols=60  Identities=28%  Similarity=0.562  Sum_probs=55.0

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecC--CCCeEEEEECCeeEEEcCCCEEEcccCC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEASGWFPSAFVRLRVSQE  198 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~~~  198 (518)
                      ...++|+|||.++..+||+|++||+|.|+++.  ++|||.|+.+|+.||||.+||+.+...+
T Consensus         5 ~~~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~   66 (93)
T 1uff_A            5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSE   66 (93)
T ss_dssp             CCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSSS
T ss_pred             CEEEEECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEECCCEEEechHHeEEcCCcc
Confidence            35789999999999999999999999999986  7899999999999999999999987543

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.45  E-value=1.2e-13  Score=102.91  Aligned_cols=57  Identities=16%  Similarity=0.141  Sum_probs=52.2

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE--eCCeeEEEEeeeeeccC
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEAFEHLSQIIINHSI   62 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~--~~~~~g~~p~~~v~~~~   62 (518)
                      ...|+|+|||.++.++||+|++||+|.|+.+.++|||.|+  .+|+.|+||++||+...
T Consensus         6 ~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~fP~~yv~~~~   64 (71)
T 2fpf_A            6 EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIEVT   64 (71)
T ss_dssp             CCCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             CeEEEECeeECccCCCcccCcCCcEEEEeEecCCCEEEEEECCCCCEEEeehHHEEECC
Confidence            4579999999999999999999999999999999999999  68899999999998543

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=2e-13  Score=106.26  Aligned_cols=58  Identities=17%  Similarity=0.164  Sum_probs=52.8

Q ss_pred             CceEEEEecCCCCC--CCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAM--EAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~--~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ...+|+|+|||.++  .++||+|++||+|.|+++.++|||.|+++|+.|+||++||+...
T Consensus        15 ~~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~   74 (88)
T 2dbk_A           15 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFD   74 (88)
T ss_dssp             CCEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEECSSCEEEECTTTEEECC
T ss_pred             CCEEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEeCCCEEEEehHHeEECC
Confidence            45689999999954  99999999999999999999999999999999999999998653

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.5e-13  Score=103.87  Aligned_cols=59  Identities=27%  Similarity=0.425  Sum_probs=53.6

Q ss_pred             ceeEEEEeecCCCCC-------CCCCCCCCCCEEEEEecCC-CCeEEEEECCeeEEEcCCCEEEccc
Q psy824          138 FVVLAEAVWDHVAME-------AEELGFRAGDVIEVLDTLD-RDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~-------~~eL~~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ....++|+|||.++.       .+||+|++||+|.|+++.+ +|||.|+.+|+.||||++||+.+..
T Consensus         6 ~~~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   72 (76)
T 2csi_A            6 SGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVSG   72 (76)
T ss_dssp             CSEEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             CccEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEECCcEEEEehHHEEECCC
Confidence            346899999999998       8999999999999999876 5899999999999999999998754

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.45  E-value=1.3e-13  Score=100.94  Aligned_cols=55  Identities=27%  Similarity=0.614  Sum_probs=51.3

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEEC--------CeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--------EASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~--------g~~G~~P~~~v~~~  194 (518)
                      ..++|+|||.++.++||+|++||+|.|++..++|||.|+..        |+.|+||++||+.+
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            2 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             cEEEEcccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            36899999999999999999999999999989999999965        89999999999875

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=3e-13  Score=101.82  Aligned_cols=58  Identities=26%  Similarity=0.513  Sum_probs=52.9

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE----CCeeEEEcCCCEEEccc
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR----GEASGWFPSAFVRLRVS  196 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~----~g~~G~~P~~~v~~~~~  196 (518)
                      ....++|+|||.++ ++||+|++||+|.|+++.++|||.|+.    +|+.||||++||+.+..
T Consensus         9 ~~~~~~alydy~~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~~   70 (75)
T 2egc_A            9 LKDVYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNS   70 (75)
T ss_dssp             CCEEEEECSCBCCC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEECCS
T ss_pred             CCeEEEECCCcCCC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEECCC
Confidence            34689999999999 999999999999999999999999996    57999999999998864

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.45  E-value=1.5e-13  Score=101.84  Aligned_cols=57  Identities=30%  Similarity=0.611  Sum_probs=53.2

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE-CCeeEEEcCCCEEEcc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEASGWFPSAFVRLRV  195 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~  195 (518)
                      ...++|+|||.+...+||+|++||+|.|+++.++|||.|+. +|+.|+||++||+.+.
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   63 (69)
T 4esr_A            6 APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASET   63 (69)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEEETTEEEEEEGGGEEEHH
T ss_pred             cCEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEeCCCCEEEEchHHeEECc
Confidence            35899999999999999999999999999998999999996 9999999999999764

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.45  E-value=1.1e-13  Score=109.45  Aligned_cols=61  Identities=25%  Similarity=0.330  Sum_probs=55.4

Q ss_pred             cceeEEEEeecCCCCC------CCCCCCCCCCEEEEE-ecCCCCeEEEEE-CCeeEEEcCCCEEEcccC
Q psy824          137 DFVVLAEAVWDHVAME------AEELGFRAGDVIEVL-DTLDRDWWWGTR-GEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       137 ~~~~~~~a~~~~~~~~------~~eL~~~~g~~i~v~-~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~  197 (518)
                      .....++|+|||.++.      .+||+|++||+|.|+ +..++|||.|+. +|+.||||++||+.+...
T Consensus        15 ~~~~~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~g~~G~~Psnyv~~~~~~   83 (96)
T 1wie_A           15 GKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDN   83 (96)
T ss_dssp             SCEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSC
T ss_pred             CCCcEEEECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEECCCCEEEEchHHEEEcCCC
Confidence            3457899999999988      999999999999999 778899999997 999999999999988654

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.44  E-value=1.3e-13  Score=98.77  Aligned_cols=55  Identities=22%  Similarity=0.371  Sum_probs=51.3

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEEC--CeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~  194 (518)
                      ..++|+|||.++.++||+|++||+|.|+++.++|||.|+..  |+.|+||++||+.+
T Consensus         2 ~~~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~   58 (59)
T 1yn8_A            2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSYI   58 (59)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEEC
T ss_pred             CEEEECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            46899999999999999999999999999989999999954  89999999999976

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=7.4e-14  Score=104.01  Aligned_cols=57  Identities=23%  Similarity=0.425  Sum_probs=53.3

Q ss_pred             eEEEEeecCCC-CCCCCCCCCCCCEEEEEecCCCCeEEEE--ECCeeEEEcCCCEEEccc
Q psy824          140 VLAEAVWDHVA-MEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       140 ~~~~a~~~~~~-~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~  196 (518)
                      ..++|+|+|.+ +.++||+|++||+|.|++..++|||.|+  .+|+.|+||++||+.+..
T Consensus         8 ~~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~   67 (71)
T 2gqi_A            8 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVSG   67 (71)
T ss_dssp             CCEEESSCCCCCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEECCC
T ss_pred             CEEEECcccCCCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEECCC
Confidence            47899999999 9999999999999999999899999999  789999999999998853

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=1.6e-13  Score=106.03  Aligned_cols=57  Identities=21%  Similarity=0.363  Sum_probs=52.9

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEe--cCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDT--LDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~--~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ..+|+|+|||.++.++||+|++||+|.|+.+  .++|||.|+++|+.|+||++||+...
T Consensus         8 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~   66 (85)
T 2dlp_A            8 SGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAA   66 (85)
T ss_dssp             CCEEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEESSSCEEEEETTSEEECC
T ss_pred             CEEEEECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEEECCEEEEechHHeEECC
Confidence            4689999999999999999999999999987  78999999999999999999998654

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.44  E-value=5.5e-14  Score=109.79  Aligned_cols=60  Identities=25%  Similarity=0.593  Sum_probs=55.9

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccCC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQE  198 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~~  198 (518)
                      ...++|+|||.++.++||+|++||+|.|++..++|||.|+.+|+.|+||++||+.+....
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~~g~~G~fPsnyV~~~~~~~   77 (92)
T 2o2o_A           18 RRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGES   77 (92)
T ss_dssp             SCEEEECSCBCCCSSSCCCBCSSCEEECCCGGGSSCBCCEETTEECCBCSSSEECCSSCS
T ss_pred             CeEEEEccccCCCCCccccccCCCEEEEeEecCCCEEEEEECCeEEEeehHHEEECCCCC
Confidence            468999999999999999999999999999988999999999999999999999887543

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=1.6e-13  Score=102.36  Aligned_cols=59  Identities=20%  Similarity=0.429  Sum_probs=55.1

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++..+||+|++||+|.|++..++|||.|+..|+.||||++||+.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   66 (71)
T 2dnu_A            8 EEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKAKDS   66 (71)
T ss_dssp             SEEEECSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEETTEEEEEEGGGCEECCCC
T ss_pred             CCEEEECCccCCCCCCCCcCCCCCEEEEeECCCCCeEEEEECCcEEEEEHHHeEEccCC
Confidence            35799999999999999999999999999998899999999999999999999988654

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=2.9e-13  Score=100.63  Aligned_cols=59  Identities=24%  Similarity=0.445  Sum_probs=54.3

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE--CCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|+|.++.++||+|++||+|.|++..++|||.|+.  +|+.|+||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ct3_A            7 GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVSGP   67 (70)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEETTCS
T ss_pred             CcEEEECccCCcCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEECCCC
Confidence            46899999999999999999999999999998999999996  499999999999988643

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.44  E-value=9.4e-14  Score=99.80  Aligned_cols=56  Identities=30%  Similarity=0.583  Sum_probs=52.2

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEccc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~  196 (518)
                      ..++|+|||.++.++||+|++||+|.|++. ++|||.|+ .+|+.|+||++||+.+..
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~   58 (60)
T 1i07_A            2 KYAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIMRT   58 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEECccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEEHHHeEEccC
Confidence            368999999999999999999999999999 89999998 789999999999998864

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.44  E-value=2.2e-13  Score=100.46  Aligned_cols=59  Identities=19%  Similarity=0.335  Sum_probs=53.0

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE-eCCeeEEEEeeeeeccCC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEAFEHLSQIIINHSIS   63 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~-~~~~~g~~p~~~v~~~~~   63 (518)
                      ....+|+|+|||.++.++||+|++||+|.|+++ +++||.|+ .+|+.|+||+.||+....
T Consensus         5 ~~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxt_A            5 SSGLKMQVLYEFEARNPRELTVVQGEKLEVLDH-SKRWWLVKNEAGRSGYIPSNILEPLSG   64 (68)
T ss_dssp             CCCEEEEESSCBCCCSSSBCCBCTTCEEEEEEC-SSSEEEEECTTSCEEEEEGGGEECCCC
T ss_pred             CCCeEEEECceECCCCcCcCCCCCCCEEEEEEc-CCCEEEEEECCCCEEEEEhHHcEECCC
Confidence            446789999999999999999999999999999 58999999 888899999999986543

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.44  E-value=2.7e-13  Score=106.67  Aligned_cols=58  Identities=19%  Similarity=0.327  Sum_probs=53.0

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEec--CCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~--~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ...+|+|+|||.++.++||+|++||+|.|+++.  ++|||.|+++|+.|+||.+||+...
T Consensus         4 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~   63 (93)
T 1uff_A            4 GSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMP   63 (93)
T ss_dssp             SCCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECC
T ss_pred             CCEEEEECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEECCCEEEechHHeEEcC
Confidence            456799999999999999999999999999986  7899999999999999999998653

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.44  E-value=8.9e-14  Score=99.23  Aligned_cols=53  Identities=17%  Similarity=0.393  Sum_probs=49.7

Q ss_pred             EEEEeecCCCCCCCCCCCCCCCEEEEEecCC-CCeEEEEE--CCeeEEEcCCCEEE
Q psy824          141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTR--GEASGWFPSAFVRL  193 (518)
Q Consensus       141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~~--~g~~G~~P~~~v~~  193 (518)
                      .++|+|||.++.++||+|++||+|.|++..+ +|||.|+.  +|+.|+||++||+.
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~g~~G~~P~~yv~~   58 (58)
T 1zuu_A            3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   58 (58)
T ss_dssp             CCEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             EEEEeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCCCCEEEEEHHHEEC
Confidence            5789999999999999999999999999886 89999997  99999999999973

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.44  E-value=1.7e-13  Score=100.38  Aligned_cols=57  Identities=16%  Similarity=0.473  Sum_probs=51.9

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ...+|+|+|||.++.++||+|++||+|.|+++.++|||.|+.+|+.|+||++||+..
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~   62 (65)
T 3u23_A            6 KKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKEL   62 (65)
T ss_dssp             --CEEEECSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEETTEEEEEEGGGEEEC
T ss_pred             CCeEEEEeeeeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEECCCEEEeehHHEEEC
Confidence            346799999999999999999999999999998899999999999999999998854

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.44  E-value=1.1e-13  Score=102.50  Aligned_cols=59  Identities=20%  Similarity=0.350  Sum_probs=53.7

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCee-EEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAF-EHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~-g~~p~~~v~~~~   62 (518)
                      .....|+|+|||.++.++||+|++||+|.|+++.++|||.|++.++. |+||++||+...
T Consensus         5 ~~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~~P~~yv~~~~   64 (69)
T 2eqi_A            5 SSGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDIS   64 (69)
T ss_dssp             CCCCEEEESSCBCCCSSSCCCBCTTCEEESCCCCSSSCEEEEETTEEEEEECGGGEEECC
T ss_pred             CCCcEEEECeeECCCCcCccCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEchHHcEECc
Confidence            34578999999999999999999999999999988999999999887 999999998653

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.44  E-value=2.1e-13  Score=100.63  Aligned_cols=57  Identities=25%  Similarity=0.483  Sum_probs=53.1

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.++.++||+|++||+|.|+++. +|||.|+ .+|+.||||++||+.+..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxt_A            7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDHS-KRWWLVKNEAGRSGYIPSNILEPLSG   64 (68)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCEEEEEGGGEECCCC
T ss_pred             CeEEEECceECCCCcCcCCCCCCCEEEEEEcC-CCEEEEEECCCCEEEEEhHHcEECCC
Confidence            46899999999999999999999999999984 8999999 899999999999998764

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.44  E-value=1.5e-13  Score=101.59  Aligned_cols=57  Identities=21%  Similarity=0.411  Sum_probs=53.5

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEcc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRV  195 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~  195 (518)
                      ...++|+|||.++.++||+|++||+|.|++..++|||.|+ .+|+.|+||++||+.+.
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A           10 GEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             CEEEEECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEECSSSCEEEEESTTEEECC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEehHHeEECc
Confidence            4678999999999999999999999999999889999999 89999999999999874

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.44  E-value=2.2e-13  Score=99.07  Aligned_cols=56  Identities=27%  Similarity=0.490  Sum_probs=51.3

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEec-CCCCeEEEEECCeeEEEcCCCEEEcc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDT-LDRDWWWGTRGEASGWFPSAFVRLRV  195 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~-~~~~w~~~~~~g~~G~~P~~~v~~~~  195 (518)
                      ..++|+|||.++..+||+|++||+|.|+++ .+.+||.|+.+|+.|+||++||+.+.
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~~   62 (63)
T 3eg3_A            6 NLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVN   62 (63)
T ss_dssp             TEEEESSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEEETTEEEEEEGGGEEESC
T ss_pred             EEEEEcceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEEECCCeEEEehHHeEECC
Confidence            579999999999999999999999999995 45679999999999999999999864

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=2e-13  Score=103.08  Aligned_cols=59  Identities=20%  Similarity=0.295  Sum_probs=53.3

Q ss_pred             cCceEEEEecCCCCCC-------CCCcccCCCCEEEEEEecC-CCeeEEEeCCeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAME-------AEELGFRAGDVIEVLDTLD-RDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~-------~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      .....|+|+|||.++.       ++||+|++||+|.|+++.+ +|||.|+++|+.|+||++||+...
T Consensus         5 ~~~~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~   71 (76)
T 2csi_A            5 SSGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNFLEEVS   71 (76)
T ss_dssp             CCSEEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEETTEEEEEEGGGCCBCC
T ss_pred             CCccEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEECCcEEEEehHHEEECC
Confidence            4567899999999998       9999999999999999877 489999999999999999998653

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=1.1e-13  Score=102.79  Aligned_cols=58  Identities=26%  Similarity=0.604  Sum_probs=54.3

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ..++|+|||.++..+||+|++||+|.|+++.++|||.|+.+|+.||||++||+.+...
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   66 (70)
T 2ega_A            9 EQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNSG   66 (70)
T ss_dssp             BCEECCSCCCCCSSSSCCCCTTCBCEEEEECTTSEEEEECSSCEEEEEGGGCEESCCC
T ss_pred             cEEEECceECCCCCCcccCCCCCEEEEEEccCCCeEEEEECCCEEEEehHHcEECCCC
Confidence            4689999999999999999999999999998999999999999999999999988643

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.44  E-value=1.5e-13  Score=101.13  Aligned_cols=57  Identities=32%  Similarity=0.647  Sum_probs=52.0

Q ss_pred             eeEEEEeecCCC-CCCCCCCCCCCCEEEEEec-CCCCeEEEEEC--CeeEEEcCCCEEEcc
Q psy824          139 VVLAEAVWDHVA-MEAEELGFRAGDVIEVLDT-LDRDWWWGTRG--EASGWFPSAFVRLRV  195 (518)
Q Consensus       139 ~~~~~a~~~~~~-~~~~eL~~~~g~~i~v~~~-~~~~w~~~~~~--g~~G~~P~~~v~~~~  195 (518)
                      ...++|+|||.| +.++||+|++||+|.|+++ .++|||.|+..  |+.|+||++||+.+.
T Consensus         6 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   66 (67)
T 2kxc_A            6 KQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE   66 (67)
T ss_dssp             CCEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEESC
T ss_pred             CEEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            358999999996 8999999999999999986 78999999976  999999999999874

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.44  E-value=1.1e-13  Score=105.95  Aligned_cols=58  Identities=29%  Similarity=0.442  Sum_probs=53.0

Q ss_pred             ceeEEEEeecC-CCCCCCCCCCCCCCEEEEEecCCCCeEEEEEC------CeeEEEcCCCEEEcc
Q psy824          138 FVVLAEAVWDH-VAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG------EASGWFPSAFVRLRV  195 (518)
Q Consensus       138 ~~~~~~a~~~~-~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~------g~~G~~P~~~v~~~~  195 (518)
                      ....++|+||| .++..+||+|++||+|.|++..++|||.|+..      |+.|+||++||+.+.
T Consensus        17 ~~~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~   81 (83)
T 2ke9_A           17 GSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVS   81 (83)
T ss_dssp             CCEEEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESSC
T ss_pred             CCeEEEEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEECC
Confidence            45689999999 89999999999999999999999999999964      799999999999764

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.44  E-value=7.4e-14  Score=104.28  Aligned_cols=59  Identities=20%  Similarity=0.256  Sum_probs=52.8

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEe-cCCCeeEEEeCCeeEEEEeeeeeccCC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDT-LDRDWWWGTRGEAFEHLSQIIINHSIS   63 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~-~~~~Ww~g~~~~~~g~~p~~~v~~~~~   63 (518)
                      ....|+|+|||.++.++||+|++||+|.|+.+ .+++||.|+++|+.|+||++||+....
T Consensus         9 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   68 (72)
T 1ugv_A            9 PFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSG   68 (72)
T ss_dssp             SCCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             CccEEEEccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEEECCcEEEecHHHEEECCC
Confidence            35679999999999999999999999999984 678999999999999999999986543

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.44  E-value=2.4e-13  Score=102.13  Aligned_cols=58  Identities=21%  Similarity=0.371  Sum_probs=52.6

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ....+|+|+|||.++.++||+|++||+|.|+++ ++|||.|+++|+.|+||..||+...
T Consensus         8 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~   65 (74)
T 1j3t_A            8 VENLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIP   65 (74)
T ss_dssp             CCCCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECC
T ss_pred             CCCeEEEECCCCCCCCCCccCCCCCCEEEEEec-CCCEEEEEECCcEEEEchHHeEECC
Confidence            345789999999999999999999999999999 5799999999999999999998653

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.44  E-value=2.5e-13  Score=100.63  Aligned_cols=58  Identities=21%  Similarity=0.373  Sum_probs=53.2

Q ss_pred             eEEEEeecCC-CCCCCCCCCCCCCEEEEEecCCCCeEEEEEC--CeeEEEcCCCEEEcccC
Q psy824          140 VLAEAVWDHV-AMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       140 ~~~~a~~~~~-~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~~~~~  197 (518)
                      ..++|+|||+ ++..+||+|++||+|.|++..++|||.|+..  |+.||||++||+.+...
T Consensus         3 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~~~~   63 (69)
T 1ruw_A            3 PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDT   63 (69)
T ss_dssp             SEEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEECCSC
T ss_pred             cEEEEccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEcCCc
Confidence            3689999996 9999999999999999999989999999976  99999999999987654

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.43  E-value=1.9e-13  Score=99.79  Aligned_cols=56  Identities=27%  Similarity=0.587  Sum_probs=51.6

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE--CCeeEEEcCCCEEEc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRLR  194 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~  194 (518)
                      ...++|+|||.++..+||+|++||+|.|++..++|||.|+.  +|+.|+||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A            6 LRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             --CEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CEEEEECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEEC
Confidence            35689999999999999999999999999998999999997  899999999999876

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.43  E-value=2e-13  Score=97.39  Aligned_cols=53  Identities=28%  Similarity=0.530  Sum_probs=49.9

Q ss_pred             EEEEeecC-CCCCCCCCCCCCCCEEEEEecCCCCeEEEEEC--CeeEEEcCCCEEE
Q psy824          141 LAEAVWDH-VAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EASGWFPSAFVRL  193 (518)
Q Consensus       141 ~~~a~~~~-~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~--g~~G~~P~~~v~~  193 (518)
                      .++|+||| .++.++||+|++||+|.|++..++|||.|+..  |+.|+||++||+.
T Consensus         2 ~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             EEEEecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEEE
Confidence            58999999 89999999999999999999999999999976  9999999999975

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.43  E-value=1.2e-13  Score=99.29  Aligned_cols=55  Identities=31%  Similarity=0.550  Sum_probs=49.7

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCC-CCeEEEEEC-CeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRG-EASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~~~-g~~G~~P~~~v~~~  194 (518)
                      ..++|+|||.++.++||+|++||+|.|++..+ +|||.|+.. |+.|+||++||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            4 VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEAI   60 (60)
T ss_dssp             CEEEECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECSSCCEEEEEGGGEEC-
T ss_pred             CEEEECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeCCCCEEEecHHHEEEC
Confidence            57899999999999999999999999998754 599999976 99999999999864

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.43  E-value=2e-13  Score=98.72  Aligned_cols=54  Identities=24%  Similarity=0.519  Sum_probs=50.0

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE--ECCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~  194 (518)
                      ..++|+|||.++.++||+|++||+|.|++.. +|||.|+  .+|+.|+||++||+.+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A            7 NLVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEcccCCCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHEEEC
Confidence            5899999999999999999999999999985 5999999  5899999999999864

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.43  E-value=1.9e-13  Score=99.93  Aligned_cols=55  Identities=20%  Similarity=0.404  Sum_probs=50.7

Q ss_pred             ceEEEEecCCCC-CCCCCcccCCCCEEEEEEecCCCeeEEE--eCCeeEEEEeeeeec
Q psy824            6 VVLAEAVWDHVA-MEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEAFEHLSQIIINH   60 (518)
Q Consensus         6 ~~~~~al~d~~~-~~~~eL~~~~gd~i~v~~~~~~~Ww~g~--~~~~~g~~p~~~v~~   60 (518)
                      ...++|+|||.+ +.++||+|++||+|.|+++.++|||.|+  .+|+.|+||++||+.
T Consensus         5 ~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   62 (65)
T 2j05_A            5 RRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEE   62 (65)
T ss_dssp             TCEEEESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CcEEEEccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCCCEEEEEhHHeEE
Confidence            357999999999 9999999999999999999899999999  678899999999874

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.43  E-value=1.7e-13  Score=100.32  Aligned_cols=54  Identities=20%  Similarity=0.459  Sum_probs=50.0

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC--------CeeEEEEeeeeec
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--------EAFEHLSQIIINH   60 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~--------~~~g~~p~~~v~~   60 (518)
                      .+|+|+|||.++.++||+|++||+|.|+++.++|||.|+..        |+.|+||++||+.
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~   63 (65)
T 2oaw_A            2 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKK   63 (65)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEE
T ss_pred             cEEEEcccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEE
Confidence            47899999999999999999999999999988999999987        7789999988873

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.43  E-value=2e-13  Score=101.83  Aligned_cols=59  Identities=17%  Similarity=0.397  Sum_probs=53.0

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEe--cCCCeeEEE-eCCeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDT--LDRDWWWGT-RGEAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~--~~~~Ww~g~-~~~~~g~~p~~~v~~~~   62 (518)
                      .....|+|+|||.++.++||+|++||+|.|+++  .++|||.|+ .+|+.|+||++||+...
T Consensus         4 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   65 (71)
T 1u5s_A            4 RVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLS   65 (71)
T ss_dssp             CSSSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECC
T ss_pred             CccEEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeCCCCEEEEeHHHEEECC
Confidence            346789999999999999999999999999998  678999997 78889999999988653

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.43  E-value=1.9e-13  Score=97.85  Aligned_cols=54  Identities=15%  Similarity=0.230  Sum_probs=50.0

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC--CeeEEEEeeeeec
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EAFEHLSQIIINH   60 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~--~~~g~~p~~~v~~   60 (518)
                      +.|+|+|||.++.++||+|++||+|.|+++.++|||.|+..  |+.|+||+.||+.
T Consensus         2 ~~~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (59)
T 1yn8_A            2 QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFVSY   57 (59)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTSSCEEEEEGGGEEE
T ss_pred             CEEEECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCCCCEEEEehHHeEE
Confidence            57999999999999999999999999999988999999986  6889999988873

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.43  E-value=1.7e-13  Score=102.09  Aligned_cols=56  Identities=16%  Similarity=0.262  Sum_probs=50.9

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEE-ecCCCeeEEE-eCCeeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLD-TLDRDWWWGT-RGEAFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~-~~~~~Ww~g~-~~~~~g~~p~~~v~~   60 (518)
                      ....|+|+|||.++.++||+|++||+|.|++ ..++|||.|+ .+|+.|+||++||+.
T Consensus        10 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~   67 (71)
T 1csk_A           10 SGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQK   67 (71)
T ss_dssp             -CEEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECTTSCEEEEETTSEEC
T ss_pred             CCCEEEEceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeCCCCEEEEehHHeEE
Confidence            4678999999999999999999999999999 6779999999 778889999998874

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.43  E-value=3.3e-13  Score=103.30  Aligned_cols=58  Identities=26%  Similarity=0.370  Sum_probs=53.0

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEe--cCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDT--LDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~--~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ....|+|+|||.++.++||+|++||+|.|+++  .++|||.|+.+|+.|+||++||+...
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   75 (81)
T 1x43_A           16 NNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLN   75 (81)
T ss_dssp             CCEEEEESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             CCeEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEECCCEEEEehHHEEECC
Confidence            45789999999999999999999999999998  46899999999999999999998653

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.43  E-value=1.8e-13  Score=100.68  Aligned_cols=55  Identities=29%  Similarity=0.723  Sum_probs=50.0

Q ss_pred             eEEEEeecCCCCCCCC-CCCCCCCEEEEEec-CCCCeEEEE--ECCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEE-LGFRAGDVIEVLDT-LDRDWWWGT--RGEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~e-L~~~~g~~i~v~~~-~~~~w~~~~--~~g~~G~~P~~~v~~~  194 (518)
                      ..++|+|||.++..++ |+|++||+|.|+.. .++|||.|+  .+|+.|+||++||+.+
T Consensus         8 ~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~l   66 (67)
T 3rnj_A            8 MRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL   66 (67)
T ss_dssp             CEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             eEEEEccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEEC
Confidence            5899999999998777 99999999999964 678999999  6899999999999976

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.43  E-value=2.3e-13  Score=97.79  Aligned_cols=54  Identities=22%  Similarity=0.428  Sum_probs=49.9

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEe-cCCCeeEEEe--CCeeEEEEeeeee
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDT-LDRDWWWGTR--GEAFEHLSQIIIN   59 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~-~~~~Ww~g~~--~~~~g~~p~~~v~   59 (518)
                      ..+|+|+|||.++.++||+|++||+|.|+++ .++|||.|+.  +|+.|+||+.||+
T Consensus         2 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~   58 (60)
T 2v1q_A            2 MERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIE   58 (60)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEE
T ss_pred             CcEEEEeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCCCEEEEEHHHEE
Confidence            3579999999999999999999999999998 4799999999  8899999998886

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.43  E-value=2.5e-13  Score=96.90  Aligned_cols=52  Identities=21%  Similarity=0.277  Sum_probs=49.2

Q ss_pred             EEEEecCC-CCCCCCCcccCCCCEEEEEEecCCCeeEEEeC--CeeEEEEeeeee
Q psy824            8 LAEAVWDH-VAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EAFEHLSQIIIN   59 (518)
Q Consensus         8 ~~~al~d~-~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~--~~~g~~p~~~v~   59 (518)
                      .++|+||| .++.++||+|++||+|.|+++.++|||.|++.  |+.|+||+.||+
T Consensus         2 ~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~   56 (58)
T 1zuy_A            2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMK   56 (58)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCSCEEEEEGGGEE
T ss_pred             EEEEecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEecHHHEE
Confidence            58999999 89999999999999999999999999999998  889999998886

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.43  E-value=1.9e-13  Score=103.88  Aligned_cols=58  Identities=26%  Similarity=0.570  Sum_probs=52.6

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE--CCeeEEEcCCCEEEcccC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~  197 (518)
                      ..++|+|||.++..+||+|++||+|.|++..++|||.|+.  +|+.|+||++||+.+...
T Consensus         6 ~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   65 (79)
T 3cqt_A            6 TLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVDRL   65 (79)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC---
T ss_pred             cEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEECCcc
Confidence            4789999999999999999999999999998999999997  999999999999988643

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.43  E-value=2.6e-13  Score=102.87  Aligned_cols=59  Identities=22%  Similarity=0.417  Sum_probs=54.6

Q ss_pred             eeEEEEeecCCCC-CCCCCCCCCCCEEEEEecC-CCCeEEEE-ECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAM-EAEELGFRAGDVIEVLDTL-DRDWWWGT-RGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~-~~~eL~~~~g~~i~v~~~~-~~~w~~~~-~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++ ..+||+|++||+|.|++.. ++|||.|+ .+|+.||||.+||+.+...
T Consensus         9 ~~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~~g~~G~~P~~yv~~~~~~   70 (77)
T 2enm_A            9 ATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPND   70 (77)
T ss_dssp             CEEEEESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECTTCCEEEEETTTEEEECCC
T ss_pred             CcEEEECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEECCCCEEEeehHHeEECCCC
Confidence            3689999999999 9999999999999999985 79999999 8999999999999998654

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.43  E-value=2e-13  Score=105.93  Aligned_cols=55  Identities=29%  Similarity=0.415  Sum_probs=50.7

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEec-----CCCeeEEEe-CCeeEEEEeeeee
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL-----DRDWWWGTR-GEAFEHLSQIIIN   59 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~-----~~~Ww~g~~-~~~~g~~p~~~v~   59 (518)
                      ...+|+|+|||.++.++||+|++||+|.|+++.     ++|||.|++ +|+.|+||+.||+
T Consensus        28 ~~~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~   88 (89)
T 2rf0_A           28 AGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA   88 (89)
T ss_dssp             CCCEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEE
T ss_pred             CCcEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCc
Confidence            346899999999999999999999999999985     789999999 8999999998886

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.43  E-value=1.3e-13  Score=101.20  Aligned_cols=54  Identities=26%  Similarity=0.508  Sum_probs=48.6

Q ss_pred             ceEEEEecCCCCCCCC-CcccCCCCEEEEEEecC-----CCeeEEEe-CCeeEEEEeeeee
Q psy824            6 VVLAEAVWDHVAMEAE-ELGFRAGDVIEVLDTLD-----RDWWWGTR-GEAFEHLSQIIIN   59 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~-eL~~~~gd~i~v~~~~~-----~~Ww~g~~-~~~~g~~p~~~v~   59 (518)
                      ..+|+|+|+|.|++++ ||+|++||+|.|+++.+     +|||.|++ +|+.|+||++||+
T Consensus         7 ~~~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~   67 (69)
T 1nm7_A            7 HHFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE   67 (69)
T ss_dssp             --CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEE
T ss_pred             eeEEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEE
Confidence            4579999999999999 99999999999999875     49999999 7899999999886

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.42  E-value=1.4e-13  Score=101.23  Aligned_cols=55  Identities=20%  Similarity=0.361  Sum_probs=51.1

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE-eCCeeEEEEeeeeecc
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEAFEHLSQIIINHS   61 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~-~~~~~g~~p~~~v~~~   61 (518)
                      ..|+|+|||.|+.++||+|++||+|.|+++.++|||.|+ .+|+.|+||++||+..
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESS
T ss_pred             eEEEECccCCCCCCCeecCCcCCEEEEEEccCCCcEEEEECCCCEEEEEhHhEEEc
Confidence            468999999999999999999999999999889999999 5888999999999864

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.42  E-value=4.5e-14  Score=103.97  Aligned_cols=61  Identities=20%  Similarity=0.382  Sum_probs=55.1

Q ss_pred             CCccCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE-eCCeeEEEEeeeeecc
Q psy824            1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEAFEHLSQIIINHS   61 (518)
Q Consensus         1 ~d~~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~-~~~~~g~~p~~~v~~~   61 (518)
                      +++.....|+|+|||.++.++||+|++||+|.|+++.+++||.|+ .+|+.|+||++||+..
T Consensus         3 ~~~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   64 (67)
T 1aww_A            3 MSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEA   64 (67)
T ss_dssp             SSCSCCCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCS
T ss_pred             CCCCCCeEEEECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEECCCCEEEEchHhEEEc
Confidence            456677899999999999999999999999999999889999998 7888999999888753

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.42  E-value=1.4e-13  Score=103.08  Aligned_cols=56  Identities=25%  Similarity=0.507  Sum_probs=51.9

Q ss_pred             EEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      .|+|+|||.+ .++||+|++||+|.|+++.++|||.|+.+|+.|+||++||+.+.+.
T Consensus         2 ~a~alydy~~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   57 (73)
T 2kxd_A            2 GAPPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG   57 (73)
T ss_dssp             CCCCCCSSCC-CSCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECCSS
T ss_pred             eEEEeeeeCC-CCCEeeEcCCCEEEEEEecCCCEEEEEECCCEEEEehHHeEEcCCC
Confidence            3689999998 8999999999999999999999999999999999999999988643

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=1.6e-13  Score=102.03  Aligned_cols=58  Identities=19%  Similarity=0.354  Sum_probs=53.4

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ....|+|+|||.++.++||+|++||+|.|+++.+++||.|+++|+.|+||++||+...
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   64 (70)
T 2ega_A            7 GLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQN   64 (70)
T ss_dssp             CCBCEECCSCCCCCSSSSCCCCTTCBCEEEEECTTSEEEEECSSCEEEEEGGGCEESC
T ss_pred             CCcEEEECceECCCCCCcccCCCCCEEEEEEccCCCeEEEEECCCEEEEehHHcEECC
Confidence            4567999999999999999999999999999989999999999999999999988543

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.42  E-value=1.2e-13  Score=102.22  Aligned_cols=57  Identities=21%  Similarity=0.319  Sum_probs=52.3

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ....++|+|||.++.++||+|++||+|.|+++ ++|||.|+.+|+.|+||++||+...
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~   63 (69)
T 1uhf_A            7 GGEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKD   63 (69)
T ss_dssp             CSEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECC
T ss_pred             CCCEEEEeeeECCCCcCccCCCCCCEEEEEEe-CCCEEEEEeCCcEEEEchHHeEECC
Confidence            45789999999999999999999999999998 7899999999999999999998543

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.42  E-value=4.7e-13  Score=99.79  Aligned_cols=57  Identities=21%  Similarity=0.359  Sum_probs=52.6

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEec-CCCeeEEEe--CCeeEEEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL-DRDWWWGTR--GEAFEHLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~-~~~Ww~g~~--~~~~g~~p~~~v~~~   61 (518)
                      ...+++|+|||.++.++||+|++||+|.|+++. ++|||.|++  +|+.|+||++||+..
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   64 (71)
T 2jt4_A            5 SKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPV   64 (71)
T ss_dssp             CCEEEEECSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             CCCEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCCCeEEechHHeEEC
Confidence            457899999999999999999999999999987 799999999  889999999999854

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.42  E-value=1.7e-13  Score=98.54  Aligned_cols=56  Identities=25%  Similarity=0.363  Sum_probs=49.3

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEEeC-CeeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRG-EAFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~-~~~g~~p~~~v~~   60 (518)
                      ..+.++|+|||.++.++||+|++||+|.|+++.+ +|||.|+++ |+.|+||+.||+.
T Consensus         2 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~g~~G~~P~~yv~~   59 (60)
T 2x3w_D            2 KGVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYVEA   59 (60)
T ss_dssp             --CEEEECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECSSCCEEEEEGGGEEC
T ss_pred             CCCEEEECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeCCCCEEEecHHHEEE
Confidence            3567999999999999999999999999998865 599999998 8889999988863

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=5e-13  Score=100.55  Aligned_cols=59  Identities=17%  Similarity=0.272  Sum_probs=52.4

Q ss_pred             ccCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe----CCeeEEEEeeeeeccC
Q psy824            3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR----GEAFEHLSQIIINHSI   62 (518)
Q Consensus         3 ~~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~----~~~~g~~p~~~v~~~~   62 (518)
                      +.....|+|+|||.++ ++||+|++||+|.|+++.++|||.|++    +|+.|+||++||+...
T Consensus         7 ~~~~~~~~alydy~~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~   69 (75)
T 2egc_A            7 GNLKDVYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKN   69 (75)
T ss_dssp             SSCCEEEEECSCBCCC-SSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEECC
T ss_pred             CCCCeEEEECCCcCCC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEECC
Confidence            3445789999999999 999999999999999999999999998    4688999999998653

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.42  E-value=1.9e-13  Score=102.12  Aligned_cols=58  Identities=19%  Similarity=0.276  Sum_probs=52.4

Q ss_pred             CceEEEEecCCCC-CCCCCcccCCCCEEEEEEe-cCCCeeEEEeC--CeeEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVA-MEAEELGFRAGDVIEVLDT-LDRDWWWGTRG--EAFEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~-~~~~eL~~~~gd~i~v~~~-~~~~Ww~g~~~--~~~g~~p~~~v~~~~   62 (518)
                      ....|+|+|||.| +.++||+|++||+|.|+.+ .++|||.|++.  |+.|+||++||+...
T Consensus         6 ~~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~   67 (72)
T 1spk_A            6 SGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLS   67 (72)
T ss_dssp             CSCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECS
T ss_pred             CceEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            4578999999996 9999999999999999987 77999999998  889999999998654

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.42  E-value=4.2e-13  Score=100.12  Aligned_cols=58  Identities=28%  Similarity=0.529  Sum_probs=52.8

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++.++||+|++||+|.|++. ++|||.|+ .+|+.|+||++||+.+...
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   65 (72)
T 2jw4_A            7 EVVVVAKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVERKNSA   65 (72)
T ss_dssp             CEEEECSSCCCCSSTTSCCCCTTCEEEEEEC-SSSSEEEECTTSCEEEECTTSCEECCCC
T ss_pred             CeEEEECcCCCcCCCCcccCCCCCEEEEEEC-CCCEEEEEECCCCEEEEEhhHEEEcCCC
Confidence            3589999999999999999999999999997 57999999 5999999999999987643

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.42  E-value=1.6e-13  Score=102.05  Aligned_cols=57  Identities=28%  Similarity=0.388  Sum_probs=53.6

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE--ECCeeEEEcCCCEEEccc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~  196 (518)
                      .+++|+|+|.++.++||+|++||+|.|++..++|||.|+  .+|+.|+||++||+.+..
T Consensus         8 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2cuc_A            8 NMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVSG   66 (70)
T ss_dssp             CCEECCSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECCC
T ss_pred             cEEEECeeECcCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEECcC
Confidence            478999999999999999999999999999889999999  799999999999998864

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.42  E-value=4.5e-13  Score=101.66  Aligned_cols=58  Identities=36%  Similarity=0.603  Sum_probs=53.8

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEEC---Cee------EEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG---EAS------GWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~---g~~------G~~P~~~v~~~~~  196 (518)
                      ..+++|+|||.++.++||+|++||+|.|++..++|||.|+..   |+.      ||||++||+.+..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~~   73 (77)
T 2d8j_A            7 GQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDSG   73 (77)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEECCC
T ss_pred             CCEEEEccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEcCC
Confidence            468999999999999999999999999999989999999966   888      9999999998754

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.42  E-value=2.9e-13  Score=97.93  Aligned_cols=56  Identities=16%  Similarity=0.293  Sum_probs=50.1

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE--eCCeeEEEEeeeeec
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEAFEHLSQIIINH   60 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~--~~~~~g~~p~~~v~~   60 (518)
                      ....+++|+|||.++.++||+|++||+|.|+++. +|||.|+  .+|+.|+||++||+.
T Consensus         4 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~   61 (62)
T 2iim_A            4 LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             TTTCEEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CCCcEEEEcccCCCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCCCEEEEEHHHEEE
Confidence            3457899999999999999999999999999985 5999999  578899999988863

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=2.3e-13  Score=103.96  Aligned_cols=59  Identities=22%  Similarity=0.397  Sum_probs=53.7

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecC--CCeeEEEeCCeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~--~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ....+++|+|||.++.++||+|++||+|.|+++.+  +|||.|+++|+.|+||.+||+...
T Consensus        15 ~~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   75 (80)
T 2d8h_A           15 NQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNS   75 (80)
T ss_dssp             SSCEEEECSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEETTEEEEEEGGGCCBCC
T ss_pred             CCCEEEEECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEECCEEEEEchhHeEEcC
Confidence            34678999999999999999999999999999875  899999999999999999998643

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=2e-13  Score=103.93  Aligned_cols=59  Identities=19%  Similarity=0.289  Sum_probs=53.6

Q ss_pred             ccCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe--CCeeEEEEeeeeeccC
Q psy824            3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEAFEHLSQIIINHSI   62 (518)
Q Consensus         3 ~~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~~~~g~~p~~~v~~~~   62 (518)
                      ......++|+|||.++.++||+|++||+|.|+++ ++|||.|++  +|+.|+||+.||+...
T Consensus        14 ~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g~~G~fP~~yv~~~~   74 (79)
T 1x6b_A           14 KGDLPQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDGETGWFPEDFARFIS   74 (79)
T ss_dssp             CSSCCEEEESSCCCCCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTCCEEEECGGGCEEEE
T ss_pred             CCCCCEEEECeeECCCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEchHHEEECC
Confidence            4456789999999999999999999999999999 899999999  8899999999988543

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.42  E-value=2.4e-13  Score=103.94  Aligned_cols=60  Identities=25%  Similarity=0.461  Sum_probs=54.5

Q ss_pred             CccCceEEEEecCCCCCCCC-CcccCCCCEEEEEEecCC-----CeeEEEe-CCeeEEEEeeeeecc
Q psy824            2 DEDFVVLAEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDR-----DWWWGTR-GEAFEHLSQIIINHS   61 (518)
Q Consensus         2 d~~~~~~~~al~d~~~~~~~-eL~~~~gd~i~v~~~~~~-----~Ww~g~~-~~~~g~~p~~~v~~~   61 (518)
                      ++....+|+|+|||.++.++ ||+|++||+|.|+++.++     |||.|++ +|+.|+||++||+..
T Consensus        10 ~~~~~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   76 (80)
T 2v1r_A           10 DPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   76 (80)
T ss_dssp             CGGGCEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             CCCcCEEEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEc
Confidence            45667899999999999999 999999999999999876     9999999 788999999998854

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.41  E-value=2.4e-13  Score=105.40  Aligned_cols=55  Identities=38%  Similarity=0.585  Sum_probs=51.2

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecC-----CCCeEEEEE-CCeeEEEcCCCEEE
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL-----DRDWWWGTR-GEASGWFPSAFVRL  193 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~-----~~~w~~~~~-~g~~G~~P~~~v~~  193 (518)
                      ...++|+|||.++.++||+|++||+|.|+++.     ++|||.|+. +|+.||||++||++
T Consensus        29 ~~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~p   89 (89)
T 2rf0_A           29 GPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP   89 (89)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEEC
T ss_pred             CcEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCcC
Confidence            45899999999999999999999999999985     799999997 99999999999974

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.41  E-value=3e-13  Score=98.68  Aligned_cols=56  Identities=27%  Similarity=0.421  Sum_probs=50.1

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe--CCeeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEAFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~~~~g~~p~~~v~~   60 (518)
                      ....++|+|||.++.++||+|++||+|.|+++.+++||.|+.  +|+.|+||++||+.
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~   62 (64)
T 4f14_A            5 NLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYIEF   62 (64)
T ss_dssp             ---CEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEE
T ss_pred             CCEEEEECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCCCCEEEEeHHHeEE
Confidence            345799999999999999999999999999998999999999  88999999988874

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=3.1e-13  Score=100.43  Aligned_cols=59  Identities=19%  Similarity=0.348  Sum_probs=53.7

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC--CeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~--~~~g~~p~~~v~~~~   62 (518)
                      .....++|+|||.++.++||+|++||+|.|+++.++|||.|++.  |+.|+||++||+...
T Consensus         5 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~G~~P~~yv~~~~   65 (70)
T 2ct3_A            5 SSGTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPVS   65 (70)
T ss_dssp             CCCEEEEESSCBCCSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSCCEEEECTTTEEETT
T ss_pred             CCCcEEEECccCCcCCcCCccCCCCCEEEEEEECCCCEEEEEECCCCCEEEechHHeEECC
Confidence            45678999999999999999999999999999989999999986  788999999998654

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.41  E-value=2e-13  Score=101.46  Aligned_cols=59  Identities=19%  Similarity=0.148  Sum_probs=53.5

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE--eCCeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~--~~~~~g~~p~~~v~~~~   62 (518)
                      ....+++|+|||.++.++||+|++||+|.|+++.+++||.|+  .+|+.|+||+.||+...
T Consensus         5 ~~~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   65 (70)
T 2cuc_A            5 SSGNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIPVS   65 (70)
T ss_dssp             SSSCCEECCSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTCCEEEEEGGGCEECC
T ss_pred             CCCcEEEECeeECcCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHeEECc
Confidence            346789999999999999999999999999999889999999  78889999999988653

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.41  E-value=2.2e-13  Score=102.30  Aligned_cols=57  Identities=26%  Similarity=0.606  Sum_probs=52.5

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecC-CCCeEEEEECCeeEEEcCCCEEEcc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL-DRDWWWGTRGEASGWFPSAFVRLRV  195 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~~~~  195 (518)
                      ...++|+|||.++..+||+|++||+|.|+++. ++|||.|+.+|+.|+||++||+.+.
T Consensus         9 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (74)
T 1gbq_A            9 SMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKP   66 (74)
T ss_dssp             -CEEEESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEEETTEEEEEEGGGEEEEC
T ss_pred             CeEEEECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEEECCCEEEEehHhEEEcC
Confidence            35799999999999999999999999999987 6799999999999999999999764

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.41  E-value=1.7e-13  Score=104.89  Aligned_cols=58  Identities=24%  Similarity=0.284  Sum_probs=51.9

Q ss_pred             cCceEEEEecCC-CCCCCCCcccCCCCEEEEEEecCCCeeEEEeC------CeeEEEEeeeeecc
Q psy824            4 DFVVLAEAVWDH-VAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG------EAFEHLSQIIINHS   61 (518)
Q Consensus         4 ~~~~~~~al~d~-~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~------~~~g~~p~~~v~~~   61 (518)
                      ....+|+|+||| .++.++||+|++||+|.|+++.++|||.|++.      |+.|+||++||+..
T Consensus        16 ~~~~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~   80 (83)
T 2ke9_A           16 RGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVV   80 (83)
T ss_dssp             -CCEEEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESS
T ss_pred             CCCeEEEEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEEC
Confidence            346789999999 89999999999999999999999999999986      57899999998853

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.41  E-value=3.5e-13  Score=101.08  Aligned_cols=56  Identities=21%  Similarity=0.434  Sum_probs=51.8

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe--CCeeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEAFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~~~~g~~p~~~v~~   60 (518)
                      ...+++|+|||.++.++||+|++||+|.|+++.+++||.|+.  +|+.|+||++||+.
T Consensus        14 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~   71 (73)
T 3h0h_A           14 GVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP   71 (73)
T ss_dssp             TTCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CCEEEEECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCCCEEEEEHHHeEE
Confidence            356899999999999999999999999999998999999998  88899999998874

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.41  E-value=3.2e-13  Score=102.85  Aligned_cols=57  Identities=19%  Similarity=0.286  Sum_probs=52.4

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecC----CCeeEEEeCCeeEEEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD----RDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~----~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ...+++|+|||.++.++||+|++||+|.|+++.+    ++||.|+.+|+.|+||++||+..
T Consensus        12 ~~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   72 (79)
T 1uhc_A           12 GNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKT   72 (79)
T ss_dssp             SSCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEEC
T ss_pred             CCeEEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEeCCCEEEEchHHeEEC
Confidence            3457999999999999999999999999999886    89999999999999999999854

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=5.7e-13  Score=102.95  Aligned_cols=58  Identities=22%  Similarity=0.490  Sum_probs=53.8

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.++..+||+|++||+|.|++..++|||.|+ .+|+.|+||++||+.+..
T Consensus        19 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~   77 (85)
T 2yuq_A           19 ETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSP   77 (85)
T ss_dssp             SCEEEESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEECSSSCEEEEETTTCEECCC
T ss_pred             CeEEEECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCEEEEehHHeEEccC
Confidence            3579999999999999999999999999999989999998 799999999999998743

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.41  E-value=3.8e-13  Score=99.17  Aligned_cols=57  Identities=26%  Similarity=0.461  Sum_probs=52.2

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.++.++||+|++||+|.|++.. ++||.|+ .+|+.|+||++||+.+..
T Consensus         8 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   65 (68)
T 2k2m_A            8 LKWVLCNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDPAGQEGYVPYNILTPYPA   65 (68)
T ss_dssp             CCEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCCEEEEGGGEEECCS
T ss_pred             CEEEEECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEeCCCCEEEEEhhhEEEcCC
Confidence            35899999999999999999999999999985 8999998 689999999999998754

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.41  E-value=3.8e-13  Score=103.48  Aligned_cols=59  Identities=29%  Similarity=0.493  Sum_probs=54.9

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE--CCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++..+||+|++||+|.|++..++|||.|+.  +|+.|+||++||+.+...
T Consensus         6 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   66 (84)
T 4ag1_C            6 VTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVDSI   66 (84)
T ss_dssp             CCEEEESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEETTTC
T ss_pred             CEEEEEcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEECCCc
Confidence            45899999999999999999999999999999999999997  999999999999988654

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.41  E-value=2.7e-13  Score=100.66  Aligned_cols=59  Identities=19%  Similarity=0.440  Sum_probs=51.6

Q ss_pred             CccCceEEEEecCCCCCCCC--CcccCCCCEEEEEEecCCCeeEEE-eCCeeEEEEeeeeecc
Q psy824            2 DEDFVVLAEAVWDHVAMEAE--ELGFRAGDVIEVLDTLDRDWWWGT-RGEAFEHLSQIIINHS   61 (518)
Q Consensus         2 d~~~~~~~~al~d~~~~~~~--eL~~~~gd~i~v~~~~~~~Ww~g~-~~~~~g~~p~~~v~~~   61 (518)
                      |++..+.|+|+|||.++.++  ||+|++||+|.|++. ++|||.|+ .+|+.|+||++||+..
T Consensus         1 d~~~~~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~   62 (70)
T 2vkn_A            1 DDNFIYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGETGIIPSNYVQLI   62 (70)
T ss_dssp             -CCCEEEEEESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEECTTSCEEEEEGGGEEEE
T ss_pred             CCCcCEEEEECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEehHHEEEC
Confidence            56778899999999999765  999999999999986 78999997 5888999999998854

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.41  E-value=1.2e-13  Score=107.95  Aligned_cols=60  Identities=18%  Similarity=0.382  Sum_probs=54.6

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccCCC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSISP   64 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~~~   64 (518)
                      ...+|+|+|||.++.++||+|++||+|.|+++.++|||.|+++|+.|+||++||+.....
T Consensus        17 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~~g~~G~fPsnyV~~~~~~   76 (92)
T 2o2o_A           17 RRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSGE   76 (92)
T ss_dssp             SSCEEEECSCBCCCSSSCCCBCSSCEEECCCGGGSSCBCCEETTEECCBCSSSEECCSSC
T ss_pred             CCeEEEEccccCCCCCccccccCCCEEEEeEecCCCEEEEEECCeEEEeehHHEEECCCC
Confidence            346899999999999999999999999999998899999999999999999999865433

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.41  E-value=4.9e-13  Score=97.15  Aligned_cols=57  Identities=19%  Similarity=0.230  Sum_probs=50.7

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEec-CCCeeEEEeCCeeEEEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL-DRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~-~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ....|+|+|||.++.++||+|++||+|.|+++. +++||.|+.+|+.|+||++||+..
T Consensus         4 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~g~~G~~P~~yv~~~   61 (63)
T 3eg3_A            4 DPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPV   61 (63)
T ss_dssp             CTTEEEESSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEEETTEEEEEEGGGEEES
T ss_pred             CCEEEEEcceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEEECCCeEEEehHHeEEC
Confidence            345799999999999999999999999999954 567999999999999999988753

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=99.41  E-value=2.2e-13  Score=103.08  Aligned_cols=44  Identities=20%  Similarity=0.555  Sum_probs=41.0

Q ss_pred             CCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824           17 AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus        17 ~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      |+.++||+|++||+|.|+++.++|||.|+++|+.|+||++||+.
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   45 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK   45 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEEETTEEECCCGGGEEE
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEEEeeEEEE
Confidence            57889999999999999999899999999999999999888874

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.41  E-value=3e-13  Score=103.41  Aligned_cols=59  Identities=25%  Similarity=0.586  Sum_probs=53.2

Q ss_pred             ceeEEEEeecCCCCCCC-CCCCCCCCEEEEEecCCC-----CeEEEEE-CCeeEEEcCCCEEEccc
Q psy824          138 FVVLAEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDR-----DWWWGTR-GEASGWFPSAFVRLRVS  196 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~-eL~~~~g~~i~v~~~~~~-----~w~~~~~-~g~~G~~P~~~v~~~~~  196 (518)
                      ...+++|+|||.++..+ ||+|++||+|.|++..++     |||.|+. +|+.|+||++||+.+..
T Consensus        13 ~~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   78 (80)
T 2v1r_A           13 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKR   78 (80)
T ss_dssp             GCEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC--
T ss_pred             cCEEEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEcCC
Confidence            45689999999999999 999999999999998876     9999997 89999999999998753

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.41  E-value=6.2e-13  Score=98.44  Aligned_cols=55  Identities=15%  Similarity=0.160  Sum_probs=50.9

Q ss_pred             eEEEEecCCC-CCCCCCcccCCCCEEEEEEecCCCeeEEEeC--CeeEEEEeeeeecc
Q psy824            7 VLAEAVWDHV-AMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EAFEHLSQIIINHS   61 (518)
Q Consensus         7 ~~~~al~d~~-~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~--~~~g~~p~~~v~~~   61 (518)
                      ..++|+|||. ++.++||+|++||+|.|+++.++|||.|++.  |+.|+||++|++..
T Consensus         3 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   60 (69)
T 1ruw_A            3 PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPY   60 (69)
T ss_dssp             SEEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTSSCEEEEEGGGEEEC
T ss_pred             cEEEEccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEECCCCCEEEEehHHeEEc
Confidence            4689999996 9999999999999999999988999999998  88999999999854

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.41  E-value=2.3e-13  Score=101.16  Aligned_cols=58  Identities=19%  Similarity=0.227  Sum_probs=52.9

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCC--eeEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE--AFEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~--~~g~~p~~~v~~~~   62 (518)
                      ....|+|+|||.++.++||+|++||+|.|+++.+++||.|++.+  +.|+||++||+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   65 (70)
T 2ecz_A            6 SGGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYVDVIS   65 (70)
T ss_dssp             CCBCEEESSCCCCCSTTBCCCCTTCBCEEEEEEETTEEEEEETTTTEEEEECTTTEEESS
T ss_pred             CCCEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCeEEEEECCCCCEEEEchHHEEECC
Confidence            45679999999999999999999999999999889999999986  88999999998653

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=1.1e-13  Score=103.07  Aligned_cols=58  Identities=19%  Similarity=0.357  Sum_probs=52.8

Q ss_pred             cCceEEEEecCCCC-CCCCCcccCCCCEEEEEEecCCCeeEEE--eCCeeEEEEeeeeecc
Q psy824            4 DFVVLAEAVWDHVA-MEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEAFEHLSQIIINHS   61 (518)
Q Consensus         4 ~~~~~~~al~d~~~-~~~~eL~~~~gd~i~v~~~~~~~Ww~g~--~~~~~g~~p~~~v~~~   61 (518)
                      .....++|+|||.+ +.++||+|++||+|.|+++.++|||.|+  .+|+.|+||++||+..
T Consensus         5 ~~~~~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g~~G~~P~~yv~~~   65 (71)
T 2gqi_A            5 SSGRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEV   65 (71)
T ss_dssp             CSCCCEEESSCCCCCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTCCEEEECTTSEEEC
T ss_pred             CCCCEEEECcccCCCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCCCEEEeeHHHEEEC
Confidence            34567999999999 9999999999999999999899999999  6788999999999865

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.40  E-value=3e-13  Score=102.74  Aligned_cols=56  Identities=23%  Similarity=0.480  Sum_probs=52.0

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe--CCeeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEAFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~~~~g~~p~~~v~~~   61 (518)
                      +.+|+|+|||.++.++||+|++||+|.|+++.++|||.|++  +|+.|+||++||+..
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (79)
T 3cqt_A            5 STLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPV   62 (79)
T ss_dssp             CCCEEESSCBCCCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CcEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCCCEEEeehHHeEEC
Confidence            45799999999999999999999999999998899999999  888999999998854

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.40  E-value=2.8e-13  Score=99.71  Aligned_cols=56  Identities=21%  Similarity=0.327  Sum_probs=50.7

Q ss_pred             CceEEEEecCCCC-CCCCCcccCCCCEEEEEEe-cCCCeeEEEeC--CeeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVA-MEAEELGFRAGDVIEVLDT-LDRDWWWGTRG--EAFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~-~~~~eL~~~~gd~i~v~~~-~~~~Ww~g~~~--~~~g~~p~~~v~~   60 (518)
                      ....|+|+|||.| +.++||+|++||+|.|+.+ .++|||.|++.  |+.|+||++||+.
T Consensus         5 ~~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~   64 (67)
T 2kxc_A            5 KKQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKL   64 (67)
T ss_dssp             CCCEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSCCEEEEEGGGEEE
T ss_pred             CCEEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCCCEEEEehHHeEE
Confidence            4568999999996 9999999999999999986 77899999998  8899999998874

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.40  E-value=1.6e-13  Score=103.70  Aligned_cols=58  Identities=19%  Similarity=0.354  Sum_probs=53.5

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ....+|+|+|||.++.++||+|++||+|.|+++.+++||.|+++|+.|+||+.||+..
T Consensus         8 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   65 (76)
T 1ujy_A            8 SHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREI   65 (76)
T ss_dssp             CCCEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEEC
T ss_pred             CCCEEEEECccCCcCCCCcccCCCCCEEEEEEecCCCEEEEEECCCEEEechHHEEEC
Confidence            4467899999999999999999999999999998899999999999999999888854

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.40  E-value=1.3e-12  Score=101.32  Aligned_cols=58  Identities=29%  Similarity=0.563  Sum_probs=53.4

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE--CCeeEEEcCCCEEEccc
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRLRVS  196 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~  196 (518)
                      ....++|+|||.++..+||+|++||+|.|+++. +|||.|+.  +|+.||||++||+.+..
T Consensus        24 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~~~   83 (86)
T 2oi3_A           24 EDIIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARVDS   83 (86)
T ss_dssp             TSEEEEESSCCCCSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTCCEEEEEGGGEEEGGG
T ss_pred             CCcEEEECccCCCCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCCCEEEEehHHcEEccc
Confidence            346899999999999999999999999999988 69999998  99999999999998753

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.40  E-value=7.4e-14  Score=102.81  Aligned_cols=57  Identities=26%  Similarity=0.555  Sum_probs=53.1

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEcc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRV  195 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~  195 (518)
                      ...++|+|+|.++..+||+|++||+|.|+++.+++||.|+ .+|+.|+||++||+.+.
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   65 (67)
T 1aww_A            8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSC
T ss_pred             CeEEEECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEECCCCEEEEchHhEEEcC
Confidence            4589999999999999999999999999999889999999 89999999999998654

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.40  E-value=2.7e-13  Score=101.81  Aligned_cols=57  Identities=25%  Similarity=0.390  Sum_probs=51.2

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEec-CCCeeEEEeCCeeEEEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL-DRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~-~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ..+.|+|+|||.++.++||+|++||+|.|+++. +++||.|+++|+.|+||++||+..
T Consensus         8 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   65 (74)
T 1gbq_A            8 GSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK   65 (74)
T ss_dssp             --CEEEESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEEETTEEEEEEGGGEEEE
T ss_pred             CCeEEEECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEEECCCEEEEehHhEEEc
Confidence            356899999999999999999999999999987 579999999999999999998843

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=9.6e-13  Score=100.03  Aligned_cols=57  Identities=16%  Similarity=0.284  Sum_probs=51.5

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE--CCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.++..+||+|++||+|.|++ .+++||.|+.  +|+.|+||++||+.+..
T Consensus        17 ~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~-~~~~Ww~~~~~~~g~~G~~P~~yv~~~~~   75 (79)
T 2cud_A           17 SDFLAVLSDYPSPDISPPIFRRGEKLRVIS-DEGGWWKAISLSTGRESYIPGICVARVSG   75 (79)
T ss_dssp             CCEEEESSCSSCTTTSCCSSCTTCEEEEEE-EETTEEEEEETTTCCEEEEEGGGEEEECC
T ss_pred             CeEEEEccCCCCCCCCcCCCCCCCEEEEEe-cCCCeEEEEECCCCCEEEeeHHHeEEccC
Confidence            358999999999999999999999999998 4689999995  59999999999998753

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=7.8e-13  Score=98.21  Aligned_cols=58  Identities=12%  Similarity=0.325  Sum_probs=52.2

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCC-CCeEEEEEC-CeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRG-EASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~~~-g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.++.++||+|++||+|.|++..+ +|||.++.. |+.||||++||+.+..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ct4_A            7 GGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTSG   66 (70)
T ss_dssp             SCEEEESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECSSSCEEEEEGGGEEECCC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeCCCCEEEEEhHHeEEcCC
Confidence            347999999999999999999999999999864 679999965 9999999999998754

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.40  E-value=5.4e-13  Score=99.53  Aligned_cols=56  Identities=20%  Similarity=0.350  Sum_probs=50.7

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe-CCeeEEEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEAFEHLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~-~~~~g~~p~~~v~~~   61 (518)
                      ...+|+|+|||.++.++||+|++||+|.|+++ ++|||.|+. +|+.|+||++||+..
T Consensus         6 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~   62 (72)
T 2jw4_A            6 EEVVVVAKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNSMNKTGFVPSNYVERK   62 (72)
T ss_dssp             CCEEEECSSCCCCSSTTSCCCCTTCEEEEEEC-SSSSEEEECTTSCEEEECTTSCEEC
T ss_pred             CCeEEEECcCCCcCCCCcccCCCCCEEEEEEC-CCCEEEEEECCCCEEEEEhhHEEEc
Confidence            45689999999999999999999999999997 679999995 888999999998854

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.40  E-value=5.5e-13  Score=104.84  Aligned_cols=62  Identities=24%  Similarity=0.448  Sum_probs=55.9

Q ss_pred             CCccCceEEEEecCCCCCCCC-CcccCCCCEEEEEEecCC-----CeeEEEe-CCeeEEEEeeeeeccC
Q psy824            1 MDEDFVVLAEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDR-----DWWWGTR-GEAFEHLSQIIINHSI   62 (518)
Q Consensus         1 ~d~~~~~~~~al~d~~~~~~~-eL~~~~gd~i~v~~~~~~-----~Ww~g~~-~~~~g~~p~~~v~~~~   62 (518)
                      +++....+|+|+|||.++.++ ||+|++||+|.|+++.++     |||.|++ +|+.|+||++||+...
T Consensus         9 ~~~~~~~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~~   77 (92)
T 1jqq_A            9 IDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIK   77 (92)
T ss_dssp             CCSTTCEEEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEECC
T ss_pred             CCCCcCEEEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEECC
Confidence            356678899999999999999 999999999999999876     9999998 7889999999998653

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.39  E-value=8.1e-13  Score=103.88  Aligned_cols=60  Identities=25%  Similarity=0.584  Sum_probs=54.8

Q ss_pred             ceeEEEEeecCCCCCCC-CCCCCCCCEEEEEecCCC-----CeEEEEE-CCeeEEEcCCCEEEcccC
Q psy824          138 FVVLAEAVWDHVAMEAE-ELGFRAGDVIEVLDTLDR-----DWWWGTR-GEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~-eL~~~~g~~i~v~~~~~~-----~w~~~~~-~g~~G~~P~~~v~~~~~~  197 (518)
                      ...+++|+|||.++..+ ||+|++||+|.|+++.++     |||.|+. +|+.||||++||+.+...
T Consensus        13 ~~~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~~~~   79 (92)
T 1jqq_A           13 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRR   79 (92)
T ss_dssp             TCEEEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEECCCC
T ss_pred             cCEEEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEECCCC
Confidence            35689999999999999 999999999999998876     9999997 899999999999988653

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.39  E-value=4.8e-13  Score=99.32  Aligned_cols=58  Identities=26%  Similarity=0.570  Sum_probs=52.1

Q ss_pred             ceeEEEEeecCCCCCCC--CCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEccc
Q psy824          138 FVVLAEAVWDHVAMEAE--ELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~--eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~  196 (518)
                      .+..++|+|+|.++..+  ||+|++||+|.|++. ++|||.|+ .+|+.|+||++||+.+..
T Consensus         4 ~~~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~   64 (70)
T 2vkn_A            4 FIYKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRANGETGIIPSNYVQLIDG   64 (70)
T ss_dssp             CEEEEEESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEECTTSCEEEEEGGGEEEEEE
T ss_pred             cCEEEEECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEehHHEEECCC
Confidence            45789999999999765  999999999999987 78999998 799999999999998764

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.39  E-value=2.8e-13  Score=97.31  Aligned_cols=54  Identities=28%  Similarity=0.470  Sum_probs=49.4

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE-eCCeeEEEEeeeeecc
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEAFEHLSQIIINHS   61 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~-~~~~~g~~p~~~v~~~   61 (518)
                      .+|+|+|||.++.++||+|++||+|.|+++ ++|||.|+ .+|+.|+||++|++..
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~   56 (60)
T 1i07_A            2 KYAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNASGDSGFVPNNILDIM   56 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEECTTSCEEEEEGGGEEEE
T ss_pred             eEEEECccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECCCCEEEEEHHHeEEc
Confidence            479999999999999999999999999999 88999998 5788899999988754

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.5e-12  Score=99.50  Aligned_cols=56  Identities=23%  Similarity=0.469  Sum_probs=51.2

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCC-CeEEEEE--CCeeEEEcCCCEEEcc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDR-DWWWGTR--GEASGWFPSAFVRLRV  195 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~-~w~~~~~--~g~~G~~P~~~v~~~~  195 (518)
                      ..++|+|||.++.++||+|++||+|.|++..++ +||.|+.  +|+.|+||++||+...
T Consensus        18 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   76 (81)
T 1x6g_A           18 TQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERS   76 (81)
T ss_dssp             CEEEESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CEEEECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEcc
Confidence            478999999999999999999999999998776 9999994  7999999999998754

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=5.3e-13  Score=99.44  Aligned_cols=57  Identities=16%  Similarity=0.191  Sum_probs=53.0

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ....++|+|||.++.++||+|++||+|.|+++.++|||.|++.|+.|+||+.||+..
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   63 (71)
T 2dnu_A            7 GEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLKKA   63 (71)
T ss_dssp             CSEEEECSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEETTEEEEEEGGGCEEC
T ss_pred             CCCEEEECCccCCCCCCCCcCCCCCEEEEeECCCCCeEEEEECCcEEEEEHHHeEEc
Confidence            457899999999999999999999999999998899999999999999999998854

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=4.2e-13  Score=98.98  Aligned_cols=56  Identities=27%  Similarity=0.507  Sum_probs=51.7

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEccc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~  196 (518)
                      ..++|+|||.++.++||+|++||+|.|+++. ++||.++ .+|+.||||++||+.+..
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxb_A            8 KYVKILYDFTARNANELSVLKDEVLEVLEDG-RQWWKLRSRSGQAGYVPCNILGEASG   64 (68)
T ss_dssp             CCEECSSCBCCSSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCEEEEETTTCCBCCC
T ss_pred             EEEEECccCCCCCCCccCCCCCCEEEEEEcC-CCEEEEEECCCCEEEEEHHHeEECCC
Confidence            4789999999999999999999999999985 8999999 699999999999998753

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=5.2e-13  Score=104.43  Aligned_cols=57  Identities=19%  Similarity=0.230  Sum_probs=52.6

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC--CeeEEEEeeeeeccC
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EAFEHLSQIIINHSI   62 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~--~~~g~~p~~~v~~~~   62 (518)
                      ...|+|+|||.++.++||+|++||+|.|+++.++|||.|++.  |+.|+||++||+...
T Consensus        17 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~   75 (90)
T 2yup_A           17 YGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSR   75 (90)
T ss_dssp             SEEEEECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEEEECTTTCCEEEEEGGGEEEEE
T ss_pred             ceEEEEeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCCCCEEEEehHHeEEcC
Confidence            467999999999999999999999999999988999999997  889999999998653

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.39  E-value=4.4e-13  Score=107.64  Aligned_cols=58  Identities=29%  Similarity=0.492  Sum_probs=51.9

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEec-CCCC--eEEEEEC--------CeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDT-LDRD--WWWGTRG--------EASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~-~~~~--w~~~~~~--------g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.|+..+||+|++||+|.|+++ .++|  ||.|+..        |+.||||++||+.+..
T Consensus        22 ~~~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~~   90 (108)
T 1i1j_A           22 ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQT   90 (108)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEE
T ss_pred             eeEEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEccc
Confidence            4679999999999999999999999999998 3444  9999976        9999999999998764

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.38  E-value=4.4e-13  Score=100.18  Aligned_cols=56  Identities=34%  Similarity=0.730  Sum_probs=51.7

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE---CCee---EEEcCCCEEEcc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR---GEAS---GWFPSAFVRLRV  195 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~---~g~~---G~~P~~~v~~~~  195 (518)
                      ...++|+|||.++.++||+|++||+|.| +..++|||.|+.   +|+.   |+||++||+.+.
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~~   71 (72)
T 2kgt_A           10 GPKYVGLWDFKSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAERE   71 (72)
T ss_dssp             CCEEECCTTCBCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEEEC
T ss_pred             CcEEEEcccCCCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEEcc
Confidence            3589999999999999999999999999 888899999996   7999   999999998764

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.38  E-value=3.2e-13  Score=99.72  Aligned_cols=57  Identities=18%  Similarity=0.296  Sum_probs=51.7

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE-eCCeeEEEEeeeeec
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEAFEHLSQIIINH   60 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~-~~~~~g~~p~~~v~~   60 (518)
                      .....++|+|||.++.++||+|++||+|.|+++.++|||.|+ .+|+.|+||+.||+.
T Consensus         8 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~   65 (68)
T 1s1n_A            8 STGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEP   65 (68)
T ss_dssp             -CCEEEEECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEECSSSCEEEEESTTEEE
T ss_pred             CCCCEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEECCCCEEEEehHHeEE
Confidence            346789999999999999999999999999999889999999 788899999988874

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=6.6e-13  Score=100.78  Aligned_cols=58  Identities=17%  Similarity=0.327  Sum_probs=52.6

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEEeC-CeeEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRG-EAFEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~-~~~g~~p~~~v~~~~   62 (518)
                      ..+.|+|+|||.++.++||+|++||+|.|+++.+ ++||.|++. |+.|+||++||+...
T Consensus        12 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   71 (78)
T 2dl5_A           12 YPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYLQFPT   71 (78)
T ss_dssp             SSEEEEECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECTTCCEEEEETTTSCCSC
T ss_pred             CCcEEEEceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeCCCCEEEEEhHHEEECC
Confidence            3578999999999999999999999999999975 899999997 888999999988653

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.38  E-value=8.3e-13  Score=103.59  Aligned_cols=57  Identities=18%  Similarity=0.423  Sum_probs=52.0

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEe--cCCCeeEEE-eCCeeEEEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDT--LDRDWWWGT-RGEAFEHLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~--~~~~Ww~g~-~~~~~g~~p~~~v~~~   61 (518)
                      ...+|+|+|||.++.++||+|++||+|.|+++  .++|||.|+ .+|+.|+||.+||+..
T Consensus        16 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~   75 (91)
T 1wx6_A           16 VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVL   75 (91)
T ss_dssp             CCEEEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECTTCCEEEEEGGGEEEE
T ss_pred             ccEEEEEeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeCCCCEEEEchHHEEEC
Confidence            45789999999999999999999999999998  678999998 7888999999998854

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.38  E-value=3.5e-13  Score=99.19  Aligned_cols=55  Identities=20%  Similarity=0.392  Sum_probs=48.7

Q ss_pred             ceEEEEecCCCCCCCCC-cccCCCCEEEEEEe-cCCCeeEEE--eCCeeEEEEeeeeec
Q psy824            6 VVLAEAVWDHVAMEAEE-LGFRAGDVIEVLDT-LDRDWWWGT--RGEAFEHLSQIIINH   60 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~e-L~~~~gd~i~v~~~-~~~~Ww~g~--~~~~~g~~p~~~v~~   60 (518)
                      ..+|+|+|||.++.++| |+|++||+|.|+.+ .++|||.|+  .+|+.|+||++||+.
T Consensus         7 ~~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g~~G~fP~~yv~~   65 (67)
T 3rnj_A            7 RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRV   65 (67)
T ss_dssp             CCEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CeEEEEccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCCCEEEEEHHHeEE
Confidence            46899999999998777 99999999999964 568999999  678899999999874

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.38  E-value=1.7e-13  Score=109.89  Aligned_cols=60  Identities=13%  Similarity=0.102  Sum_probs=53.6

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCee---EEEEeeeeeccCC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAF---EHLSQIIINHSIS   63 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~---g~~p~~~v~~~~~   63 (518)
                      ....+|+|+|||.|+.++||+|++||+|.|+++.++|||.|+++|+.   |+||++||+....
T Consensus         3 ~~~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~~~   65 (108)
T 2rqv_A            3 LGSLYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDI   65 (108)
T ss_dssp             CSCCCEEESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCCCS
T ss_pred             CCCeEEEECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEecC
Confidence            34567999999999999999999999999999989999999998766   9999999986543

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.38  E-value=6.3e-13  Score=100.82  Aligned_cols=58  Identities=29%  Similarity=0.416  Sum_probs=53.3

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC---Cee------EEEEeeeeecc
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG---EAF------EHLSQIIINHS   61 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~---~~~------g~~p~~~v~~~   61 (518)
                      ....+|+|+|||.++.++||+|++||+|.|+++.+++||.|++.   |+.      |+||++||+..
T Consensus         5 ~~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~   71 (77)
T 2d8j_A            5 SSGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAED   71 (77)
T ss_dssp             SCCEEEEESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEEC
T ss_pred             CCCCEEEEccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeEc
Confidence            45678999999999999999999999999999988999999998   888      99999998854

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.38  E-value=1.3e-12  Score=101.05  Aligned_cols=54  Identities=28%  Similarity=0.617  Sum_probs=50.1

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEE
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRL  193 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~  193 (518)
                      ...++|+|||.++..+||+|++||+|.|++. ++|||.|+ .+|+.|+||++||+.
T Consensus        31 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           31 EVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVER   85 (86)
T ss_dssp             CEEEEESSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEECTTSCEEEEEGGGBCC
T ss_pred             ceEEEECccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEECCCCEEEeehHHEEe
Confidence            4689999999999999999999999999998 67999999 689999999999963

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.38  E-value=9e-13  Score=99.89  Aligned_cols=57  Identities=18%  Similarity=0.228  Sum_probs=52.0

Q ss_pred             ceEEEEecCCCCC-CCCCcccCCCCEEEEEEec-CCCeeEEE-eCCeeEEEEeeeeeccC
Q psy824            6 VVLAEAVWDHVAM-EAEELGFRAGDVIEVLDTL-DRDWWWGT-RGEAFEHLSQIIINHSI   62 (518)
Q Consensus         6 ~~~~~al~d~~~~-~~~eL~~~~gd~i~v~~~~-~~~Ww~g~-~~~~~g~~p~~~v~~~~   62 (518)
                      ...|+|+|||.++ .++||+|++||+|.|+++. ++|||.|+ .+|+.|+||++||+...
T Consensus         9 ~~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~~g~~G~~P~~yv~~~~   68 (77)
T 2enm_A            9 ATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILP   68 (77)
T ss_dssp             CEEEEESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECTTCCEEEEETTTEEEEC
T ss_pred             CcEEEECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEECCCCEEEeehHHeEECC
Confidence            3789999999999 9999999999999999985 78999999 88889999999998654

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.38  E-value=4.8e-13  Score=107.40  Aligned_cols=56  Identities=23%  Similarity=0.401  Sum_probs=50.1

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEec-CCC--eeEEEeC--------CeeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL-DRD--WWWGTRG--------EAFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~-~~~--Ww~g~~~--------~~~g~~p~~~v~~~   61 (518)
                      ...|+|+|||.|+.++||+|++||+|.|+.+. +.|  ||.|+++        |+.|+||++||+..
T Consensus        22 ~~~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~   88 (108)
T 1i1j_A           22 ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVRED   88 (108)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEE
T ss_pred             eeEEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEc
Confidence            46799999999999999999999999999983 444  9999988        78899999999854

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=9.8e-13  Score=104.29  Aligned_cols=58  Identities=17%  Similarity=0.287  Sum_probs=51.6

Q ss_pred             CceEEEEecCCCCC--------CCCCcccCCCCEEEEEEec-CCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAM--------EAEELGFRAGDVIEVLDTL-DRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~--------~~~eL~~~~gd~i~v~~~~-~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ...+|+|+|||.++        .++||+|++||+|.|+.+. ++|||.|+++|+.|+||++||+...
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~~g~~G~~P~~yv~~~~   82 (97)
T 2csq_A           16 PARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNMVSEIQ   82 (97)
T ss_dssp             CCEEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEETTEEEEEETTTSEECC
T ss_pred             CceEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEECCcEEEEehHHeEECC
Confidence            35789999999999        7999999999999999764 4789999999999999999998654

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.37  E-value=6.5e-13  Score=102.77  Aligned_cols=56  Identities=20%  Similarity=0.393  Sum_probs=50.2

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE-eCCeeEEEEeeeeec
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEAFEHLSQIIINH   60 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~-~~~~~g~~p~~~v~~   60 (518)
                      ....+|+|+|||.++.++||+|++||+|.|+++ ++|||.|+ .+|+.|+||++||+.
T Consensus        29 ~~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           29 TEEVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNAANRTGYVPSNYVER   85 (86)
T ss_dssp             CCCEEEEESSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEECTTSCEEEEEGGGBCC
T ss_pred             CCceEEEECccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEECCCCEEEeehHHEEe
Confidence            344789999999999999999999999999998 77999999 578889999988863

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=1.3e-12  Score=103.13  Aligned_cols=59  Identities=19%  Similarity=0.344  Sum_probs=53.8

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEec--CC--CCeEEEE--ECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDT--LD--RDWWWGT--RGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~--~~--~~w~~~~--~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|+|.++..+||+|++||+|.|+++  .+  +|||.|+  .+|+.|+||.+||+.+...
T Consensus        16 ~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~~   80 (94)
T 2e5k_A           16 HETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADEC   80 (94)
T ss_dssp             CEEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECCSC
T ss_pred             CeEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEcccC
Confidence            4689999999999999999999999999988  34  8999999  8999999999999988643

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.37  E-value=5e-13  Score=105.70  Aligned_cols=59  Identities=17%  Similarity=0.183  Sum_probs=53.2

Q ss_pred             cCceEEEEecCCCCCC------CCCcccCCCCEEEEE-EecCCCeeEEEe-CCeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAME------AEELGFRAGDVIEVL-DTLDRDWWWGTR-GEAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~------~~eL~~~~gd~i~v~-~~~~~~Ww~g~~-~~~~g~~p~~~v~~~~   62 (518)
                      ....+|+|||||.++.      ++||+|++||+|.|+ ++.++|||.|++ +|+.|+||++||+...
T Consensus        15 ~~~~~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~g~~G~~Psnyv~~~~   81 (96)
T 1wie_A           15 GKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQ   81 (96)
T ss_dssp             SCEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCC
T ss_pred             CCCcEEEECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEECCCCEEEEchHHEEEcC
Confidence            3467899999999998      999999999999999 777899999999 8889999999998653

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.37  E-value=7e-13  Score=104.37  Aligned_cols=60  Identities=30%  Similarity=0.541  Sum_probs=54.2

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCC----CCeEEEEECCe-eEEEcCCCEEEcccC
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD----RDWWWGTRGEA-SGWFPSAFVRLRVSQ  197 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~----~~w~~~~~~g~-~G~~P~~~v~~~~~~  197 (518)
                      ....++|+|||.++..+||+|++||+|.|+++.+    +|||.|+..|+ .||||.+||+.+...
T Consensus        16 ~~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~~~~~G~~P~~yv~~~~~~   80 (93)
T 1wxu_A           16 DHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKR   80 (93)
T ss_dssp             CBBCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESSSSSCEEECSTTEEECCCB
T ss_pred             CCEEEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeCCcCEEEEehHHEEEcCCc
Confidence            3467999999999999999999999999999877    69999998777 999999999988654

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.1e-12  Score=99.65  Aligned_cols=58  Identities=14%  Similarity=0.194  Sum_probs=51.0

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe--CCeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~~~~g~~p~~~v~~~~   62 (518)
                      ....+++|||||.++.++||+|++||+|.|++. +++||.|++  +|+.|+||++||+...
T Consensus        15 ~~~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~~P~~yv~~~~   74 (79)
T 2cud_A           15 LDSDFLAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTGRESYIPGICVARVS   74 (79)
T ss_dssp             SCCCEEEESSCSSCTTTSCCSSCTTCEEEEEEE-ETTEEEEEETTTCCEEEEEGGGEEEEC
T ss_pred             CCCeEEEEccCCCCCCCCcCCCCCCCEEEEEec-CCCeEEEEECCCCCEEEeeHHHeEEcc
Confidence            345689999999999999999999999999984 689999997  4788999999998643

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.36  E-value=1.3e-12  Score=96.26  Aligned_cols=57  Identities=25%  Similarity=0.324  Sum_probs=50.8

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe-CCeeEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEAFEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~-~~~~g~~p~~~v~~~~   62 (518)
                      ...+++|+|||.++.++||+|++||+|.|+++. ++||.|+. +|+.|+||++||+...
T Consensus         7 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~~g~~G~~P~~yv~~~~   64 (68)
T 2k2m_A            7 ALKWVLCNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDPAGQEGYVPYNILTPYP   64 (68)
T ss_dssp             CCCEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECTTSCCEEEEGGGEEECC
T ss_pred             CCEEEEECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEeCCCCEEEEEhhhEEEcC
Confidence            457899999999999999999999999999985 89999975 6788999999998653

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.36  E-value=4.3e-13  Score=100.27  Aligned_cols=55  Identities=29%  Similarity=0.587  Sum_probs=50.8

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe---CCee---EEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR---GEAF---EHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~---~~~~---g~~p~~~v~~   60 (518)
                      ...+|+|+|||.++.++||+|++||+|.| ++.++|||.|+.   +|+.   |+||++||+.
T Consensus         9 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~   69 (72)
T 2kgt_A            9 LGPKYVGLWDFKSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAE   69 (72)
T ss_dssp             CCCEEECCTTCBCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEE
T ss_pred             CCcEEEEcccCCCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEE
Confidence            35789999999999999999999999999 888899999999   8999   9999988874

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=8.6e-13  Score=97.27  Aligned_cols=57  Identities=23%  Similarity=0.353  Sum_probs=50.9

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe-CCeeEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEAFEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~-~~~~g~~p~~~v~~~~   62 (518)
                      ...+|+|+|||.++.++||+|++||+|.|+++ +++||.|+. +|+.|+||++||+...
T Consensus         6 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~g~~G~~P~~yv~~~~   63 (68)
T 1wxb_A            6 SGKYVKILYDFTARNANELSVLKDEVLEVLED-GRQWWKLRSRSGQAGYVPCNILGEAS   63 (68)
T ss_dssp             SCCCEECSSCBCCSSSSBCCBCTTCEEEEEEC-SSSEEEEECTTSCEEEEETTTCCBCC
T ss_pred             CCEEEEECccCCCCCCCccCCCCCCEEEEEEc-CCCEEEEEECCCCEEEEEHHHeEECC
Confidence            35679999999999999999999999999998 489999994 7888999999988653

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=2.1e-12  Score=98.67  Aligned_cols=56  Identities=20%  Similarity=0.338  Sum_probs=50.5

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCC-CeeEEEe--CCeeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDR-DWWWGTR--GEAFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~-~Ww~g~~--~~~~g~~p~~~v~~~   61 (518)
                      ...|+|+|||.++.++||+|++||+|.|+++.++ +||.|+.  +|+.|+||++||+..
T Consensus        17 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   75 (81)
T 1x6g_A           17 GTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRER   75 (81)
T ss_dssp             TCEEEESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CCEEEECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCCCEEEEehHHEEEc
Confidence            4579999999999999999999999999998776 9999986  588899999999854

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.34  E-value=5.4e-12  Score=103.64  Aligned_cols=57  Identities=25%  Similarity=0.503  Sum_probs=52.1

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE---CCeeEEEcCCCEEEcc
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR---GEASGWFPSAFVRLRV  195 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~~~~  195 (518)
                      ...+++|+|+|.++..+||+|++||+|.|+++. +|||.|+.   +|+.|+||++||+.+.
T Consensus        58 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~~~  117 (119)
T 2rqr_A           58 KERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHIKE  117 (119)
T ss_dssp             CCEEEEBCSCBCCCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCCCC
T ss_pred             CceEEEEccccCCCCCCcccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEEec
Confidence            356899999999999999999999999999986 69999997   8999999999998653

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.33  E-value=3.5e-13  Score=108.13  Aligned_cols=58  Identities=21%  Similarity=0.312  Sum_probs=52.9

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCee---EEEcCCCEEEcccC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFVRLRVSQ  197 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~---G~~P~~~v~~~~~~  197 (518)
                      .+++|+|||.++.++||+|++||+|.|+++.++|||.|+.+|+.   |+||++||+.+...
T Consensus         6 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~~~~   66 (108)
T 2rqv_A            6 LYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIA   66 (108)
T ss_dssp             CCEEESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCCCSS
T ss_pred             eEEEECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEecCC
Confidence            46999999999999999999999999999889999999987766   99999999987643

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.33  E-value=7.7e-12  Score=101.72  Aligned_cols=58  Identities=29%  Similarity=0.598  Sum_probs=54.1

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE--CCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.++.++||+|++||+|.|++..++|||.|+.  +|+.|+||++||+.+..
T Consensus        27 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   86 (109)
T 2yt6_A           27 VTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPADS   86 (109)
T ss_dssp             CCEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEESSS
T ss_pred             CEEEEECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEECCc
Confidence            46899999999999999999999999999998999999994  89999999999998854

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=2.8e-12  Score=95.15  Aligned_cols=57  Identities=7%  Similarity=0.097  Sum_probs=51.3

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEEeC-CeeEEEEeeeeeccC
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRG-EAFEHLSQIIINHSI   62 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~-~~~g~~p~~~v~~~~   62 (518)
                      ...|+|+|||.++.++||+|++||+|.|+++.+ +|||.|+.. |+.|+||++||+...
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~~g~~G~~P~~yv~~~~   65 (70)
T 2ct4_A            7 GGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYLRVTS   65 (70)
T ss_dssp             SCEEEESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECSSSCEEEEEGGGEEECC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeCCCCEEEEEhHHeEEcC
Confidence            567999999999999999999999999999875 679999998 888999999998543

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.33  E-value=2.6e-12  Score=108.96  Aligned_cols=59  Identities=22%  Similarity=0.450  Sum_probs=53.8

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEec-CCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL-DRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~-~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ....+|+|+|||.|+.++||+|++||+|.|+++. ++|||.|+++|+.|+||++||+...
T Consensus         3 ~~~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~~g~~G~fP~~yv~~~~   62 (142)
T 2kbt_A            3 GTFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEEDY   62 (142)
T ss_dssp             CCCCEEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEEETTEEEEEETTSEEESS
T ss_pred             CcCeEEEECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEEECCeeEEechHHEEEcc
Confidence            4567899999999999999999999999999984 7899999999999999999998653

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.32  E-value=1.7e-12  Score=105.82  Aligned_cols=57  Identities=32%  Similarity=0.590  Sum_probs=52.1

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEe-----cCCCCeEEEEE----------CCeeEEEcCCCEEEc
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLD-----TLDRDWWWGTR----------GEASGWFPSAFVRLR  194 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~-----~~~~~w~~~~~----------~g~~G~~P~~~v~~~  194 (518)
                      ....++|+|||.++..+||+|++||+|.|+.     ..++|||.|+.          +|+.|+||++||+.+
T Consensus        43 ~~~~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l  114 (115)
T 1bb9_A           43 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV  114 (115)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             cceEEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEEC
Confidence            4568999999999999999999999999999     78899999975          389999999999976

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.32  E-value=3.1e-12  Score=99.24  Aligned_cols=56  Identities=21%  Similarity=0.411  Sum_probs=51.2

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe--CCeeEEEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEAFEHLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~~~~g~~p~~~v~~~   61 (518)
                      ...+++|+|||.++.++||+|++||+|.|+++. +|||.|++  +|+.|+||++||+..
T Consensus        24 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g~~G~~P~~yv~~~   81 (86)
T 2oi3_A           24 EDIIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATRKEGYIPSNYVARV   81 (86)
T ss_dssp             TSEEEEESSCCCCSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTCCEEEEEGGGEEEG
T ss_pred             CCcEEEECccCCCCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCCCEEEEehHHcEEc
Confidence            347899999999999999999999999999997 59999999  889999999998853

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.31  E-value=2e-12  Score=100.82  Aligned_cols=59  Identities=22%  Similarity=0.291  Sum_probs=51.2

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEec-------------CC--CCeEEEEE--CCeeEEEcCCCEEEccc
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDT-------------LD--RDWWWGTR--GEASGWFPSAFVRLRVS  196 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~-------------~~--~~w~~~~~--~g~~G~~P~~~v~~~~~  196 (518)
                      ....++|+|||.++.++||+|++||+|.|+..             ..  .|||.|+.  +|+.|+||++||+.+..
T Consensus        10 ~~~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i~~   85 (90)
T 3o5z_A           10 EGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGP   85 (90)
T ss_dssp             SEEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEEEE
T ss_pred             CCcEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEecc
Confidence            35689999999999999999999999999843             22  38999985  69999999999998864

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=1.7e-12  Score=100.34  Aligned_cols=56  Identities=18%  Similarity=0.318  Sum_probs=51.4

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE-eCCeeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEAFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~-~~~~~g~~p~~~v~~~   61 (518)
                      ..+|+|+|||.++.++||+|++||+|.|+++.+++||.|+ .+|+.|+||++||+..
T Consensus        19 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~   75 (85)
T 2yuq_A           19 ETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEK   75 (85)
T ss_dssp             SCEEEESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEECSSSCEEEEETTTCEEC
T ss_pred             CeEEEECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCEEEEehHHeEEc
Confidence            4679999999999999999999999999999889999996 5788899999988864

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.31  E-value=1.1e-13  Score=103.08  Aligned_cols=58  Identities=21%  Similarity=0.464  Sum_probs=52.6

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeE-EEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFE-HLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g-~~p~~~v~~~~   62 (518)
                      ....|+|+|||.++.++||+|++||+|.|+++.++|||.|+++|+.| +||++||+...
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~gG~~P~~yv~~~~   63 (71)
T 1hsq_A            5 FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMV   63 (71)
T ss_dssp             SSSCCCCSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCBCSSSCSCCEETTTCCSCS
T ss_pred             CCeEEEECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEEECCeEEeEEChHHcEECC
Confidence            45678999999999999999999999999999899999999998886 99999988553

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.31  E-value=1.3e-12  Score=103.86  Aligned_cols=56  Identities=27%  Similarity=0.496  Sum_probs=52.5

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ...++|+|||.++.++||+|++||+|.|+++.++|||.|+++|+.|+||++||+..
T Consensus        34 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~   89 (98)
T 1udl_A           34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMT   89 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEEC
T ss_pred             ceEEEECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehHHeEEc
Confidence            56799999999999999999999999999998899999999999999999998854

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.31  E-value=3.4e-12  Score=99.86  Aligned_cols=57  Identities=28%  Similarity=0.624  Sum_probs=51.9

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE--CCeeEEEcCCCEEEcccC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~~  197 (518)
                      ..++|+|||.++.++||+|.+||+|.|++. ++|||.|+.  +|+.|+||++||+.+...
T Consensus         4 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   62 (90)
T 3reb_B            4 IIVVALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDSG   62 (90)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEECC-
T ss_pred             EEEEECCccCcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEECCCC
Confidence            478999999999999999999999999998 579999996  899999999999988643

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.30  E-value=2.1e-12  Score=97.13  Aligned_cols=56  Identities=27%  Similarity=0.597  Sum_probs=51.5

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE---CCeeEEEcCCCEEEccc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR---GEASGWFPSAFVRLRVS  196 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~~~~~  196 (518)
                      .+++|+|||.++.++||+|++||+|.|++.. +|||.|+.   +|+.|+||++||+.+..
T Consensus        12 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~~~~   70 (74)
T 2m0y_A           12 KYGVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLKEA   70 (74)
T ss_dssp             SCEEECSEECCCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEECCC
T ss_pred             eEEEEceeeCCCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEEecc
Confidence            4789999999999999999999999999985 89999996   79999999999998754

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.30  E-value=1.3e-12  Score=102.80  Aligned_cols=58  Identities=26%  Similarity=0.347  Sum_probs=52.5

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecC----CCeeEEEeCCe-eEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD----RDWWWGTRGEA-FEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~----~~Ww~g~~~~~-~g~~p~~~v~~~~   62 (518)
                      ....|+|||||.++.++||+|++||+|.|+++.+    +|||.|+++++ .|+||.+||+...
T Consensus        16 ~~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~~~~~G~~P~~yv~~~~   78 (93)
T 1wxu_A           16 DHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILG   78 (93)
T ss_dssp             CBBCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESSSSSCEEECSTTEEECC
T ss_pred             CCEEEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeCCcCEEEEehHHEEEcC
Confidence            4567999999999999999999999999999877    59999999988 8999999998653

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.30  E-value=1.5e-12  Score=100.12  Aligned_cols=58  Identities=21%  Similarity=0.327  Sum_probs=51.1

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEec---------------CCCCeEEEE--ECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDT---------------LDRDWWWGT--RGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~---------------~~~~w~~~~--~~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.++.++||+|++||+|.|+.+               .++|||.|+  .+|+.|+||++||+.+..
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~~   79 (83)
T 3i5r_A            5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   79 (83)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             CcEEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECCc
Confidence            4689999999999999999999999999964               245999997  469999999999998764

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.30  E-value=4.1e-12  Score=104.60  Aligned_cols=58  Identities=19%  Similarity=0.416  Sum_probs=53.4

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE---CCeeEEEcCCCEEEcccC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR---GEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~~~~~~  197 (518)
                      .+++|+|||.++.++||+|++||+|.|+++.++|||.|+.   .|+.|+||++||+.+...
T Consensus         4 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~~~   64 (120)
T 2kym_A            4 LFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIIDLM   64 (120)
T ss_dssp             CEEEECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEECSS
T ss_pred             EEEEEcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEccCC
Confidence            5799999999999999999999999999999999999984   688999999999988644

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.29  E-value=3.7e-12  Score=104.61  Aligned_cols=55  Identities=20%  Similarity=0.312  Sum_probs=50.7

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe---CCeeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR---GEAFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~---~~~~g~~p~~~v~~   60 (518)
                      ...+|+|+|||.++.++||+|++||+|.|+++. +|||.|++   +|+.|+||++||+.
T Consensus        58 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~  115 (119)
T 2rqr_A           58 KERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHI  115 (119)
T ss_dssp             CCEEEEBCSCBCCCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCC
T ss_pred             CceEEEEccccCCCCCCcccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEE
Confidence            357899999999999999999999999999986 59999999   89999999999874

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.29  E-value=3.8e-12  Score=99.55  Aligned_cols=55  Identities=20%  Similarity=0.455  Sum_probs=50.3

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe--CCeeEEEEeeeeeccC
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEAFEHLSQIIINHSI   62 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~~~~g~~p~~~v~~~~   62 (518)
                      .+|+|+|||.++.++||+|.+||+|.|+++ ++|||.|+.  +|+.|+||++||+...
T Consensus         4 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g~~G~~P~~yv~~~~   60 (90)
T 3reb_B            4 IIVVALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVD   60 (90)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTCCEEEEEGGGEEEEC
T ss_pred             EEEEECCccCcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCCCEEEEehhheEECC
Confidence            579999999999999999999999999998 579999998  7889999999998643

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.29  E-value=2.5e-12  Score=100.27  Aligned_cols=58  Identities=16%  Similarity=0.153  Sum_probs=49.5

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEe-------------cC--CCeeEEEe--CCeeEEEEeeeeecc
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDT-------------LD--RDWWWGTR--GEAFEHLSQIIINHS   61 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~-------------~~--~~Ww~g~~--~~~~g~~p~~~v~~~   61 (518)
                      .....|+|+|||.++.++||+|++||+|.|+.+             .+  .|||.|++  .|+.|+||++||+..
T Consensus         9 ~~~~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i   83 (90)
T 3o5z_A            9 PEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFL   83 (90)
T ss_dssp             CSEEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEE
T ss_pred             CCCcEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEe
Confidence            346789999999999999999999999999843             22  38999987  588899999999853

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.29  E-value=2.2e-12  Score=105.16  Aligned_cols=58  Identities=24%  Similarity=0.438  Sum_probs=51.3

Q ss_pred             ccCceEEEEecCCCCCCCCCcccCCCCEEEEEE-----ecCCCeeEEEeC----------CeeEEEEeeeeec
Q psy824            3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLD-----TLDRDWWWGTRG----------EAFEHLSQIIINH   60 (518)
Q Consensus         3 ~~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~-----~~~~~Ww~g~~~----------~~~g~~p~~~v~~   60 (518)
                      +....+|+|||||.++.++||+|++||+|.|++     ..++|||.|++.          |+.|+||++||+.
T Consensus        41 ~~~~~~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~  113 (115)
T 1bb9_A           41 PGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTER  113 (115)
T ss_dssp             TTCCEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEE
T ss_pred             CCcceEEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEE
Confidence            345678999999999999999999999999999     678999999763          6789999998874

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=4.1e-12  Score=100.19  Aligned_cols=58  Identities=17%  Similarity=0.227  Sum_probs=52.0

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEe--cC--CCeeEEE--eCCeeEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDT--LD--RDWWWGT--RGEAFEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~--~~--~~Ww~g~--~~~~~g~~p~~~v~~~~   62 (518)
                      ...+|+|+|||.++.++||+|++||+|.|+++  .+  +|||.|+  .+|+.|+||++||+...
T Consensus        15 ~~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~   78 (94)
T 2e5k_A           15 NHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKAD   78 (94)
T ss_dssp             CCEEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECC
T ss_pred             CCeEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEcc
Confidence            35689999999999999999999999999988  34  8999999  78999999999998653

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.28  E-value=1.6e-13  Score=102.20  Aligned_cols=58  Identities=29%  Similarity=0.637  Sum_probs=53.0

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeE-EEcCCCEEEcccC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASG-WFPSAFVRLRVSQ  197 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G-~~P~~~v~~~~~~  197 (518)
                      ..++|+|||.++..+||+|++||+|.|+++.++|||.|+.+|+.| +||++||+.+...
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~gG~~P~~yv~~~~~~   65 (71)
T 1hsq_A            7 CAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             SCCCCSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCBCSSSCSCCEETTTCCSCSCC
T ss_pred             eEEEECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEEECCeEEeEEChHHcEECCCc
Confidence            467899999999999999999999999999899999999888887 9999999987643

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=99.28  E-value=3.3e-11  Score=107.31  Aligned_cols=57  Identities=25%  Similarity=0.522  Sum_probs=52.2

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE---CCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR---GEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~~~~~  196 (518)
                      ..+++|+|+|.++.++||+|++||+|.|++..+ |||.|+.   +|+.|+||++||+.+..
T Consensus        17 ~~~~~Alydf~~~~~~eLs~~~Gd~i~v~~~~~-~W~~g~~~~~~g~~G~fP~nyV~~~~~   76 (184)
T 3a98_A           17 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCG-DWYRGYLIKHKMLQGIFPKSFIHIKEV   76 (184)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEEET-TEEEEEETTEEEEEEEEEGGGEEEECC
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCEEEEEecCC-CEEEEEEecCCCceEEECcceEEEecc
Confidence            458999999999999999999999999999876 6999997   78999999999998764

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.27  E-value=2.1e-11  Score=109.51  Aligned_cols=58  Identities=31%  Similarity=0.580  Sum_probs=53.1

Q ss_pred             cceeEEEEeecCCCCCCCCCCCCCCCEEEEEe-----cCCCCeEEEEE----------CCeeEEEcCCCEEEc
Q psy824          137 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLD-----TLDRDWWWGTR----------GEASGWFPSAFVRLR  194 (518)
Q Consensus       137 ~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~-----~~~~~w~~~~~----------~g~~G~~P~~~v~~~  194 (518)
                      .....++|+|+|.++..+||+|++||+|.|+.     ..++|||.|+.          +|+.||||.+||+.+
T Consensus       140 ~~~~~~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l  212 (213)
T 1mv3_A          140 GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV  212 (213)
T ss_dssp             TCCEEEEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEE
T ss_pred             CcceEEEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEEC
Confidence            34578999999999999999999999999999     78899999995          599999999999976

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.27  E-value=1.2e-12  Score=121.45  Aligned_cols=62  Identities=21%  Similarity=0.476  Sum_probs=56.7

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEcccCCC
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVSQED  199 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~~~  199 (518)
                      ....++|+|||.++..+||+|++||+|.|+++.++|||.|+ .+|+.||||++||+.+.....
T Consensus       135 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~  197 (230)
T 2dvj_A          135 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASA  197 (230)
T ss_dssp             CCCCCBCCSCCCCSSSSSCCCCSSCBCCCCBCSCSSEEEEECTTSCEEEEEGGGSCCCCSSCC
T ss_pred             cceeEEEeeeecCCCCCCccCcCCCEEEEEEccCCCcEEEEeCCCCEEEEehHHeEEcCCCCc
Confidence            34578999999999999999999999999999999999999 899999999999999876543

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.27  E-value=4.8e-12  Score=104.18  Aligned_cols=56  Identities=13%  Similarity=0.227  Sum_probs=50.9

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe---CCeeEEEEeeeeeccC
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR---GEAFEHLSQIIINHSI   62 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~---~~~~g~~p~~~v~~~~   62 (518)
                      .+|+|+|||.++.++||+|++||+|.|+++.++|||.|+.   .|+.|+||++||+...
T Consensus         4 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~   62 (120)
T 2kym_A            4 LFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIID   62 (120)
T ss_dssp             CEEEECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEEC
T ss_pred             EEEEEcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEcc
Confidence            5799999999999999999999999999999999999986   4677999999998653

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.27  E-value=3.6e-12  Score=95.80  Aligned_cols=55  Identities=22%  Similarity=0.357  Sum_probs=50.1

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe---CCeeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR---GEAFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~---~~~~g~~p~~~v~~~   61 (518)
                      ..+|+|+|||.++.++||+|++||+|.|+++. +|||.|++   +|+.|+||++||+..
T Consensus        11 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~~   68 (74)
T 2m0y_A           11 EKYGVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHLK   68 (74)
T ss_dssp             CSCEEECSEECCCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEEC
T ss_pred             CeEEEEceeeCCCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEEe
Confidence            45799999999999999999999999999985 79999998   788899999998854

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.26  E-value=1.4e-11  Score=89.07  Aligned_cols=42  Identities=17%  Similarity=0.529  Sum_probs=39.3

Q ss_pred             CCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824           19 EAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus        19 ~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      +++||+|++||+|.|+++.+++||.|+.+|+.|+||++||+.
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   43 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK   43 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             CccccCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEE
Confidence            578999999999999999999999999999999999988874

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.26  E-value=2.3e-12  Score=99.11  Aligned_cols=57  Identities=14%  Similarity=0.177  Sum_probs=49.1

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEe---------------cCCCeeEEEe--CCeeEEEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDT---------------LDRDWWWGTR--GEAFEHLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~---------------~~~~Ww~g~~--~~~~g~~p~~~v~~~   61 (518)
                      ....|+|+|||.++.++||+|++||+|.|+.+               .++|||.|+.  +|+.|+||++||+..
T Consensus         4 ~~~~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~   77 (83)
T 3i5r_A            4 EGYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYI   77 (83)
T ss_dssp             EEEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEE
T ss_pred             CCcEEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEEC
Confidence            35789999999999999999999999999964               2349999965  588999999999853

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.25  E-value=2.1e-13  Score=103.30  Aligned_cols=56  Identities=18%  Similarity=0.266  Sum_probs=50.7

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe-CCeeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEAFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~-~~~~g~~p~~~v~~   60 (518)
                      ...+|+|+|||.++.++||+|++||+|.|+++.++|||.|+. +|+.|+||++||+.
T Consensus        19 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~   75 (77)
T 1awj_A           19 EETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   75 (77)
T ss_dssp             SSSCCCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCCSSSCCCCCBSTTCCC
T ss_pred             CceEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCEEEEehHHEEE
Confidence            345799999999999999999999999999998899999995 78889999888874

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.24  E-value=9.6e-12  Score=101.13  Aligned_cols=57  Identities=19%  Similarity=0.396  Sum_probs=52.5

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe--CCeeEEEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEAFEHLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~~~~g~~p~~~v~~~   61 (518)
                      ...+++|+|||.++.++||+|++||+|.|+++.++|||.|+.  +|+.|+||++||+..
T Consensus        26 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g~~G~~P~~yv~~~   84 (109)
T 2yt6_A           26 GVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPA   84 (109)
T ss_dssp             SCCEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSCCEEEECTTTEEES
T ss_pred             CCEEEEECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCCCEEEechHHcEEC
Confidence            357899999999999999999999999999998999999996  788899999999864

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.22  E-value=2.8e-11  Score=117.14  Aligned_cols=60  Identities=22%  Similarity=0.493  Sum_probs=55.8

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEcccC
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~  197 (518)
                      ....++|+|||.++..+||+|++||+|.|+++.++|||.|+ .+|+.||||++||+.+...
T Consensus       133 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~  193 (304)
T 2eyz_A          133 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPA  193 (304)
T ss_dssp             CCCEEEECSCCCCSCSSSCCCCTTCEEEEEECCSSSEEEEECTTSCEEEEESTTEEECCCS
T ss_pred             cceeEEEEeeecCCCCCcCcccCCCEEEEEEecCCCcEEEEeCCCceeccchhccccccCC
Confidence            44689999999999999999999999999999999999999 8999999999999988754

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.22  E-value=6.3e-13  Score=100.68  Aligned_cols=54  Identities=24%  Similarity=0.518  Sum_probs=50.7

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEE
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRL  193 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~  193 (518)
                      ..++|+|||.++..+||+|++||+|.|++..++|||.|+ .+|+.||||++||+.
T Consensus        21 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~   75 (77)
T 1awj_A           21 TLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   75 (77)
T ss_dssp             SCCCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCCSSSCCCCCBSTTCCC
T ss_pred             eEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCEEEEehHHEEE
Confidence            468999999999999999999999999999889999999 599999999999974

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.21  E-value=2.7e-11  Score=91.87  Aligned_cols=56  Identities=23%  Similarity=0.516  Sum_probs=47.0

Q ss_pred             eEEEEeecCCCCC---CCCCCCCCCCEEEEEecC-CCCeEEEE--ECCeeEEEcCCCEEEcc
Q psy824          140 VLAEAVWDHVAME---AEELGFRAGDVIEVLDTL-DRDWWWGT--RGEASGWFPSAFVRLRV  195 (518)
Q Consensus       140 ~~~~a~~~~~~~~---~~eL~~~~g~~i~v~~~~-~~~w~~~~--~~g~~G~~P~~~v~~~~  195 (518)
                      ..+.++|+|.++.   .+||+|++||+|.|+++. ++|||.|+  .+|+.|+||++||+++.
T Consensus        16 ~~~~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~~~   77 (78)
T 1k1z_A           16 EVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   77 (78)
T ss_dssp             EECSCBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEESC
T ss_pred             EEEEECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEECC
Confidence            3455667776643   589999999999999995 89999999  58999999999999763

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.21  E-value=7.8e-12  Score=112.35  Aligned_cols=57  Identities=25%  Similarity=0.448  Sum_probs=51.4

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEE-----ecCCCeeEEEe----------CCeeEEEEeeeeec
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLD-----TLDRDWWWGTR----------GEAFEHLSQIIINH   60 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~-----~~~~~Ww~g~~----------~~~~g~~p~~~v~~   60 (518)
                      ..+.+|+|||||.++..+||+|++||+|.|++     ..++|||.|+.          +|+.|+||.+||+.
T Consensus       140 ~~~~~~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~  211 (213)
T 1mv3_A          140 GFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTER  211 (213)
T ss_dssp             TCCEEEEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEE
T ss_pred             CcceEEEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEE
Confidence            44678999999999999999999999999999     67899999996          48889999999874

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.19  E-value=2.2e-11  Score=90.31  Aligned_cols=44  Identities=30%  Similarity=0.673  Sum_probs=39.0

Q ss_pred             CCCCCCCCCCCEEEEEec-CCCCeEEEE--ECCeeEEEcCCCEEEcc
Q psy824          152 EAEELGFRAGDVIEVLDT-LDRDWWWGT--RGEASGWFPSAFVRLRV  195 (518)
Q Consensus       152 ~~~eL~~~~g~~i~v~~~-~~~~w~~~~--~~g~~G~~P~~~v~~~~  195 (518)
                      ..+||+|++||+|.|+++ .++|||.|+  .+|+.|+||++||+++.
T Consensus        23 ~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~   69 (70)
T 1gcq_C           23 FGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPYV   69 (70)
T ss_dssp             CSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             CCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEECC
Confidence            344999999999999998 678999995  78999999999999763

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.16  E-value=3.3e-11  Score=106.83  Aligned_cols=56  Identities=14%  Similarity=0.363  Sum_probs=51.8

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE-eCCeeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEAFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~-~~~~~g~~p~~~v~~   60 (518)
                      ....++|+|||.++.++||+|++||+|.|+++.++|||.|+ .+|+.|+||++||+.
T Consensus       117 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          117 IIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI  173 (174)
T ss_dssp             CSEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTCCEEEEEGGGEEE
T ss_pred             cccEEEEecCcccCCCCccccccCCEEEEEEccCCCeEEEEECCCCEEEEChHHEEe
Confidence            45689999999999999999999999999999999999999 588999999999873

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.16  E-value=3.5e-11  Score=106.66  Aligned_cols=56  Identities=20%  Similarity=0.561  Sum_probs=52.7

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEE
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRL  193 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~  193 (518)
                      ....++|+|||.++.++||+|++||+|.|+++.++|||.|+ .+|+.|+||++||+.
T Consensus       117 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          117 IIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQI  173 (174)
T ss_dssp             CSEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTCCEEEEEGGGEEE
T ss_pred             cccEEEEecCcccCCCCccccccCCEEEEEEccCCCeEEEEECCCCEEEEChHHEEe
Confidence            45689999999999999999999999999999999999999 699999999999985

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.16  E-value=2.5e-11  Score=92.10  Aligned_cols=54  Identities=13%  Similarity=0.303  Sum_probs=44.4

Q ss_pred             eEEEEecCCCCCC---CCCcccCCCCEEEEEEec-CCCeeEEE--eCCeeEEEEeeeeec
Q psy824            7 VLAEAVWDHVAME---AEELGFRAGDVIEVLDTL-DRDWWWGT--RGEAFEHLSQIIINH   60 (518)
Q Consensus         7 ~~~~al~d~~~~~---~~eL~~~~gd~i~v~~~~-~~~Ww~g~--~~~~~g~~p~~~v~~   60 (518)
                      ..++|+|+|.++.   ++||+|++||+|.|+++. ++|||.|+  .+|+.|+||++||+.
T Consensus        16 ~~~~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~g~~G~fP~nyV~~   75 (78)
T 1k1z_A           16 EVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP   75 (78)
T ss_dssp             EECSCBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTTTEEEEECSTTEEE
T ss_pred             EEEEECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCCCCEEEEehHHeEE
Confidence            3445566666643   599999999999999995 89999999  578999999999874

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=99.15  E-value=5.5e-11  Score=85.73  Aligned_cols=43  Identities=23%  Similarity=0.499  Sum_probs=39.8

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG   47 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~   47 (518)
                      ....|+|+|||.|+.++||+|++||+|.|+++.+++||.|+++
T Consensus        20 ~~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~n   62 (62)
T 1g2b_A           20 GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN   62 (62)
T ss_dssp             SSCEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEC
T ss_pred             CceEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEeC
Confidence            3568999999999999999999999999999999999999864

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=99.15  E-value=1.2e-10  Score=83.99  Aligned_cols=41  Identities=24%  Similarity=0.580  Sum_probs=38.3

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEEC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG  180 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~  180 (518)
                      ..++|+|||.++..+||+|++||+|.|+++.+++||.|+++
T Consensus        22 ~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~n   62 (62)
T 1g2b_A           22 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN   62 (62)
T ss_dssp             CEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEC
T ss_pred             eEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEeC
Confidence            47999999999999999999999999999999999999864

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.13  E-value=4.7e-11  Score=110.70  Aligned_cols=60  Identities=17%  Similarity=0.389  Sum_probs=54.2

Q ss_pred             ccCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE-eCCeeEEEEeeeeeccC
Q psy824            3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEAFEHLSQIIINHSI   62 (518)
Q Consensus         3 ~~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~-~~~~~g~~p~~~v~~~~   62 (518)
                      .....+|+|+|||.++.++||+|++||+|.|+++.++|||.|+ .+|+.|+||++||+...
T Consensus       133 ~~~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~  193 (230)
T 2dvj_A          133 QEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYR  193 (230)
T ss_dssp             CCCCCCCBCCSCCCCSSSSSCCCCSSCBCCCCBCSCSSEEEEECTTSCEEEEEGGGSCCCC
T ss_pred             cccceeEEEeeeecCCCCCCccCcCCCEEEEEEccCCCcEEEEeCCCCEEEEehHHeEEcC
Confidence            3445679999999999999999999999999999999999999 78889999999998654

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.12  E-value=8.9e-11  Score=87.00  Aligned_cols=53  Identities=17%  Similarity=0.365  Sum_probs=42.5

Q ss_pred             EEEEecCCCCCC------CCCcccCCCCEEEEEEe-cCCCeeEE--EeCCeeEEEEeeeeec
Q psy824            8 LAEAVWDHVAME------AEELGFRAGDVIEVLDT-LDRDWWWG--TRGEAFEHLSQIIINH   60 (518)
Q Consensus         8 ~~~al~d~~~~~------~~eL~~~~gd~i~v~~~-~~~~Ww~g--~~~~~~g~~p~~~v~~   60 (518)
                      .++|+++|.+..      ++||+|++||+|.|+++ .++|||.|  ..+|+.|+||++||+.
T Consensus         6 ~~~~~~~y~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g~~G~fP~~yv~~   67 (70)
T 1gcq_C            6 KMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP   67 (70)
T ss_dssp             EEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEE
T ss_pred             cceEEEEEEecCCCCCCCCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCCCCEeEeehHHeEE
Confidence            345555555543      44999999999999999 67899999  5678899999999874

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=99.12  E-value=7.4e-11  Score=113.52  Aligned_cols=56  Identities=25%  Similarity=0.491  Sum_probs=52.9

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      +..|+|+|||.|+.++||+|++||+|.|+++.++|||.|+.+|+.|+||++||+..
T Consensus         2 ~~~~~a~~~~~~~~~~el~~~~gd~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~   57 (283)
T 3jv3_A            2 SCQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLT   57 (283)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEEETTEEEEEEGGGEEEG
T ss_pred             CeEEEEccccCCCCCCcCCCCCCCEEEEEecCCCCEEEEEECCCCCcCCCcccccc
Confidence            46899999999999999999999999999999999999999999999999999854

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.11  E-value=1.1e-10  Score=105.12  Aligned_cols=56  Identities=20%  Similarity=0.353  Sum_probs=52.7

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ...++|+|||.++.++||+|.+||+|.|+++.++|||.|+++|+.|+||++||+..
T Consensus        81 ~~~~~al~dy~a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~  136 (193)
T 1ng2_A           81 GEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKS  136 (193)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEET
T ss_pred             ceeeeeccccCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCEEEEehHHeEEC
Confidence            46799999999999999999999999999998899999999999999999999864

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.10  E-value=9e-11  Score=108.17  Aligned_cols=57  Identities=30%  Similarity=0.528  Sum_probs=53.2

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ...+|+|+|||.|+.++||+|++||+|.|+++.++|||.|+++|+.|+||++||+..
T Consensus       157 ~~~~~~al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~  213 (217)
T 1gri_A          157 QPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV  213 (217)
T ss_dssp             CCCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECSSCEEEEEGGGEEEE
T ss_pred             CceEEEecCCccCCCCCcCCCCCCCEEEEEEeCCCCeEEEEECCeEEEEeHHHeEEC
Confidence            356899999999999999999999999999999999999999999999999998854

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*

Probab=99.10  E-value=3.5e-10  Score=91.76  Aligned_cols=67  Identities=16%  Similarity=0.258  Sum_probs=55.0

Q ss_pred             cccccceEeeeeEEEEecCcc--cceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824          448 IETSSQLIHQGEVIRVTSGMW--TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       448 ~~~~r~ll~~g~l~~~~~~~~--~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      ..++|.||++|.++++.....  .+.+|+|||||+||+|+++..++..|.+...+||+++.|.+++|..
T Consensus         2 ~~pgR~lv~eG~l~el~~~~~k~~~~v~~FLfND~Ll~a~~~~~~~~~~~~~~~~~L~~~~v~d~~d~~   70 (113)
T 1zc3_B            2 ETPGQYLVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDNP   70 (113)
T ss_dssp             ---CCCEEEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEECCBT
T ss_pred             CCCCeEEEEeCcEEEEccccCCCCccEEEEecCCEEEEEEEeccCcccEEEEEEEEcccCEEEECCCCc
Confidence            357899999999999976432  4568999999999999997655556999999999999999999865

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.09  E-value=1.7e-10  Score=83.30  Aligned_cols=45  Identities=27%  Similarity=0.688  Sum_probs=42.1

Q ss_pred             CCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          152 EAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       152 ~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      +++||+|++||+|.|++..++|||.|+.+|+.|+||++||+.+.+
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   46 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDS   46 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECSC
T ss_pred             CccccCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEcCC
Confidence            568999999999999999999999999999999999999998854

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.68  E-value=9.4e-12  Score=120.42  Aligned_cols=156  Identities=15%  Similarity=0.231  Sum_probs=95.2

Q ss_pred             CCeeEEEeCCee-------EEEEeeeeeccCCCCCCCCCccccCCCcc---cccccc-------CCCCCcccCCccccCC
Q psy824           39 RDWWWGTRGEAF-------EHLSQIIINHSISPNCDISKSLKRIRPHH---ALRRSV-------SQPLGINELSPLLRRK  101 (518)
Q Consensus        39 ~~Ww~g~~~~~~-------g~~p~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------~~~~~~~~l~~~~~~~  101 (518)
                      ..||+|.+....       .--+.|+|+.+...++.+..+++......   ..+...       ....++.+|+..+...
T Consensus        12 ~~Wyhg~isR~~Ae~lL~~~~~G~FLvR~S~~~~g~~~LSv~~~~~v~H~~I~~~~~g~~~~~~~~F~sl~~Lv~~y~~~   91 (303)
T 2lqn_A           12 SAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPALLEFYKIH   91 (303)
Confidence            579999876433       11357999998877777777765432111   111000       1225666666666654


Q ss_pred             CCCCCCCCCCCCCCCCCCcccCCCCCccCCCCCCccceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-EC
Q psy824          102 PIGTRPGDGTNSLCCSDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RG  180 (518)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~  180 (518)
                      ....   ..-..++........... ..............++|+|||.++..+||+|++||+|.|+++.++|||.|+ .+
T Consensus        92 ~~~~---~~L~~P~~r~~~~~~~~~-~~p~~~~~~~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~~~~~~  167 (303)
T 2lqn_A           92 YLDT---TTLIEPAPRYPSPPMGSV-SAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKD  167 (303)
Confidence            4310   000000000000000000 000001112345679999999999999999999999999999999999999 69


Q ss_pred             CeeEEEcCCCEEEcccCC
Q psy824          181 EASGWFPSAFVRLRVSQE  198 (518)
Q Consensus       181 g~~G~~P~~~v~~~~~~~  198 (518)
                      |+.||||++||+.+....
T Consensus       168 g~~G~~P~~yv~~~~~~~  185 (303)
T 2lqn_A          168 GRVGMIPVPYVEKLVRSS  185 (303)
Confidence            999999999999887543

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.04  E-value=2.6e-10  Score=101.14  Aligned_cols=56  Identities=25%  Similarity=0.516  Sum_probs=52.0

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE--CCeeEEEcCCCEEEccc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRLRVS  196 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~  196 (518)
                      ..++|+|||.++.++||+|++||+|.|++. +++||.|+.  +|+.|+||.+||+....
T Consensus        13 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~vP~~yv~~~~~   70 (175)
T 4d8k_A           13 NLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKANS   70 (175)
T ss_dssp             CEEEESSCBCCCSSSBCCBCTTCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             cEEEEccCcCCcCCcccccccCCEEEEEcc-CCCEEEEEECCCCceeeecccccccccc
Confidence            589999999999999999999999999998 679999997  89999999999997653

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.04  E-value=2.5e-10  Score=101.22  Aligned_cols=55  Identities=16%  Similarity=0.360  Sum_probs=50.3

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe--CCeeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEAFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~~~~g~~p~~~v~~~   61 (518)
                      ..+|+|+|||.|+.++||+|++||+|.|+++ +++||.|+.  +|+.|+||++|++..
T Consensus        12 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g~~G~vP~~yv~~~   68 (175)
T 4d8k_A           12 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQEGFIPFNFVAKA   68 (175)
T ss_dssp             -CEEEESSCBCCCSSSBCCBCTTCEEEEEEC-CSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             CcEEEEccCcCCcCCcccccccCCEEEEEcc-CCCEEEEEECCCCceeeecccccccc
Confidence            4689999999999999999999999999999 789999998  788999999999854

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=99.04  E-value=2.2e-10  Score=102.00  Aligned_cols=54  Identities=20%  Similarity=0.345  Sum_probs=49.7

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe---CCeeEEEEeeeeec
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR---GEAFEHLSQIIINH   60 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~---~~~~g~~p~~~v~~   60 (518)
                      ..+|+|+|||.|+.++||+|++||+|.|+++.+ |||.|++   +|+.|+||++||+.
T Consensus        17 ~~~~~Alydf~~~~~~eLs~~~Gd~i~v~~~~~-~W~~g~~~~~~g~~G~fP~nyV~~   73 (184)
T 3a98_A           17 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCG-DWYRGYLIKHKMLQGIFPKSFIHI   73 (184)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEEET-TEEEEEETTEEEEEEEEEGGGEEE
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCEEEEEecCC-CEEEEEEecCCCceEEECcceEEE
Confidence            468999999999999999999999999999977 6999998   77889999999884

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.02  E-value=3.3e-10  Score=111.42  Aligned_cols=59  Identities=39%  Similarity=0.621  Sum_probs=55.5

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++.++||+|++||+|.|+++.++|||.|+.+|+.||||++||+.+...
T Consensus       174 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~  232 (341)
T 2dyb_A          174 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDF  232 (341)
T ss_dssp             CCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEECC
T ss_pred             CcEEEEEEeeCCCCCCcCCccCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEcCCC
Confidence            45799999999999999999999999999999999999999999999999999998654

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=99.01  E-value=3.4e-10  Score=116.76  Aligned_cols=60  Identities=45%  Similarity=0.956  Sum_probs=55.4

Q ss_pred             ccCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         3 ~~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      +....+|+|+|||.|+.++||+|++||+|.|+++.++|||.|+++|+.|+||++||+...
T Consensus        27 ~~~~~~~~al~~~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   86 (466)
T 2pz1_A           27 DGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFVRLRV   86 (466)
T ss_dssp             TTCCEEEEESSCBCCCCTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECS
T ss_pred             CCCccEEEEccccCCCCCCcCCCCCCCEEEEEEecCCCEEEEEECCcEEEEehhHeeecc
Confidence            345689999999999999999999999999999999999999999999999999999654

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=99.00  E-value=2.8e-10  Score=84.24  Aligned_cols=52  Identities=23%  Similarity=0.385  Sum_probs=46.7

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecC--CCCeEEEEE----CCeeEEEcCCCE
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTR----GEASGWFPSAFV  191 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~----~g~~G~~P~~~v  191 (518)
                      ..+.|+|||.|...+||+|++||.+.|++..  +++||.++.    .+++|+||.+||
T Consensus        18 e~~valydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           18 ELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             EEEECSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             eEEEEEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            4689999999999999999999999999976  489999994    347899999998

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=98.99  E-value=1.9e-10  Score=86.80  Aligned_cols=48  Identities=29%  Similarity=0.684  Sum_probs=44.4

Q ss_pred             CCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          150 AMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       150 ~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ++..+||+|++||+|.|+++.++|||.|+.+|+.||||++||+.+...
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   49 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSG   49 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEEETTEEECCCGGGEEECCCS
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEEEeeEEEEcCCC
Confidence            567889999999999999998999999999999999999999988653

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=98.96  E-value=6e-10  Score=82.48  Aligned_cols=52  Identities=17%  Similarity=0.263  Sum_probs=46.0

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecC--CCeeEEEeC----CeeEEEEeeee
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRG----EAFEHLSQIII   58 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~--~~Ww~g~~~----~~~g~~p~~~v   58 (518)
                      ..++|+|||.|+.++||+|++||+|+|+++.+  ++||.++..    ++.|++|.+|+
T Consensus        18 e~~valydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           18 ELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             EEEECSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             eEEEEEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            56899999999999999999999999999874  899999862    36799998887

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=98.91  E-value=1.3e-09  Score=112.10  Aligned_cols=56  Identities=16%  Similarity=0.165  Sum_probs=52.2

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE--eCCeeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEAFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~--~~~~~g~~p~~~v~~~   61 (518)
                      ...++|+|||.|++++||+|++||+|.|+++.++|||.|+  ++|+.|+||++||+..
T Consensus       442 ~~~~~aly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~  499 (526)
T 2de0_X          442 AHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREK  499 (526)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             ccceEEeecCCCCCCCcCCcCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEc
Confidence            4679999999999999999999999999999999999999  6899999999999864

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=98.88  E-value=2.6e-09  Score=109.77  Aligned_cols=59  Identities=14%  Similarity=0.219  Sum_probs=53.2

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEe-cCCCeeEEEeC-CeeEEEEeeeeeccCC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDT-LDRDWWWGTRG-EAFEHLSQIIINHSIS   63 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~-~~~~Ww~g~~~-~~~g~~p~~~v~~~~~   63 (518)
                      .+.+|+|+|||.|+.++||+|++||+|.|+++ .++|||.|+.. |+.|+||++||++...
T Consensus        10 ~~~~~~aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~~g~~G~~P~~yv~~~~~   70 (450)
T 1k9a_A           10 SGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG   70 (450)
T ss_dssp             TTCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCC
T ss_pred             CCCEEEECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEECCCceeeechhccccccc
Confidence            45689999999999999999999999999998 57899999988 8889999999986543

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=98.87  E-value=1.7e-09  Score=113.71  Aligned_cols=57  Identities=23%  Similarity=0.572  Sum_probs=52.4

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE--CCeeEEEcCCCEEEcc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRLRV  195 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~  195 (518)
                      ...++|+|||+++.++||+|++||+|.|++..++|||.|+.  +|+.||||++||+...
T Consensus        85 ~~~~~alyd~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~  143 (535)
T 2h8h_A           85 VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD  143 (535)
T ss_dssp             --CEEESSCBCCCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             CcEEEEccccCCcCCCcCCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhcccc
Confidence            45689999999999999999999999999999999999997  8999999999999864

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=98.87  E-value=2e-09  Score=110.67  Aligned_cols=59  Identities=24%  Similarity=0.333  Sum_probs=54.7

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE--ECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.|+.++||+|++||+|.|++..++|||.|+  .+|+.|+||++||+.+...
T Consensus       442 ~~~~~aly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~g~~G~fPsnyV~~~~~~  502 (526)
T 2de0_X          442 AHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVREKIET  502 (526)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTTTEEEEEEGGGEEECCCE
T ss_pred             ccceEEeecCCCCCCCcCCcCCCCEEEEccccCCCeeEEEeCCCCCEEEECchheeEcccC
Confidence            4678999999999999999999999999999999999999  6999999999999987643

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=98.86  E-value=2.7e-09  Score=103.44  Aligned_cols=58  Identities=19%  Similarity=0.560  Sum_probs=53.1

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEcc
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRV  195 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~  195 (518)
                      ....++|+|||.++..+||+|++||+|.|+++.++|||.|+ .+|+.||||++||+...
T Consensus       146 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~  204 (308)
T 3qwy_A          146 IIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQM  204 (308)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTSCEEEEEGGGEEEC-
T ss_pred             cceeEEEeceEcCCCCCcCcCCCCCEEEEEEcCCCCeEEEEeCCCCeeEeccccccccc
Confidence            34689999999999999999999999999999999999999 59999999999999553

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=98.84  E-value=2.2e-09  Score=110.35  Aligned_cols=56  Identities=18%  Similarity=0.424  Sum_probs=52.2

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe--CCeeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEAFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~~~~g~~p~~~v~~~   61 (518)
                      +..++|+|||.|+.++||+|++||+|.|+++.++|||.|+.  +|+.|+||++||+..
T Consensus         2 ~~~~~al~~~~~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~   59 (452)
T 1fmk_A            2 VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS   59 (452)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             ceEEEECCccCCCCCCCCCccCCCEEEEeccCCCCceEEEEcCCCcccccCccccccc
Confidence            46799999999999999999999999999998999999999  899999999999853

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=98.83  E-value=2.4e-09  Score=112.56  Aligned_cols=56  Identities=18%  Similarity=0.424  Sum_probs=51.2

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe--CCeeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEAFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~~~~g~~p~~~v~~~   61 (518)
                      ...|+|+|||+|+.++||+|++||+|.|+++.++|||.|+.  +|+.|+||++||+..
T Consensus        85 ~~~~~alyd~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~  142 (535)
T 2h8h_A           85 VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS  142 (535)
T ss_dssp             --CEEESSCBCCCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             CcEEEEccccCCcCCCcCCcCCCCEEEEEEecCCCceEEEECCCCcceEecchhhccc
Confidence            35699999999999999999999999999999999999999  789999999999863

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=98.80  E-value=5e-09  Score=107.63  Aligned_cols=57  Identities=21%  Similarity=0.443  Sum_probs=52.3

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEec-CCCCeEEEEEC-CeeEEEcCCCEEEccc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDT-LDRDWWWGTRG-EASGWFPSAFVRLRVS  196 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~-~~~~w~~~~~~-g~~G~~P~~~v~~~~~  196 (518)
                      ..++|+|||.|+.++||+|++||+|.|++. .++|||.|+.. |+.|+||++||+....
T Consensus        12 ~~~~aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~~g~~G~~P~~yv~~~~~   70 (450)
T 1k9a_A           12 TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG   70 (450)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCC
T ss_pred             CEEEECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEECCCceeeechhccccccc
Confidence            479999999999999999999999999998 67899999965 9999999999998654

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.80  E-value=3.8e-09  Score=87.32  Aligned_cols=80  Identities=16%  Similarity=0.341  Sum_probs=64.2

Q ss_pred             HHHhcccCCCccccccccceEeeeeEEEEecC-cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCC
Q psy824          435 WQQRVEGWEGEDLIETSSQLIHQGEVIRVTSG-MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG  513 (518)
Q Consensus       435 ~~~~i~~~~~~~l~~~~r~ll~~g~l~~~~~~-~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~  513 (518)
                      ++..|+||++.++.+-+ ..++.+.+...... ...++|++|||+|+||+|++.. +...|+|++.+||..|.|++.+|.
T Consensus        10 l~~~I~gWeG~~i~~lG-~ii~~s~v~~~~~~~~~~~eR~l~LF~~~Ll~~s~~~-~~~~f~~kgklPL~g~~V~~~ed~   87 (132)
T 1v61_A           10 LSEPIQAWEGDDIKTLG-NVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASP-RMSGFMYQGKIPIAGMVVNRLDEI   87 (132)
T ss_dssp             TTSCCBTCCSSCSTTTC-CCSCEEEEEBCCSSSSCCCEEEEEECSSCEEEEECSS-SSSCCEEEEEECTTTCBCSTTCSS
T ss_pred             HhhhhcccccCChhhcC-CeEEEeeEEEEEcccCcceEEEEEEcCCeEEEEEecC-CCceEEEEEEEecceeEEEecccc
Confidence            46789999999998774 67777776655432 3467999999999999999764 235899999999999999999887


Q ss_pred             CCC
Q psy824          514 KGR  516 (518)
Q Consensus       514 ~~~  516 (518)
                      ++.
T Consensus        88 ~~~   90 (132)
T 1v61_A           88 EGS   90 (132)
T ss_dssp             SSS
T ss_pred             ccC
Confidence            643

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=98.79  E-value=4.7e-09  Score=107.94  Aligned_cols=56  Identities=21%  Similarity=0.562  Sum_probs=52.8

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE--CCeeEEEcCCCEEEcc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRLRV  195 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~  195 (518)
                      ..++|+|||.|+.++||+|++||+|.|+++.++|||.|+.  +|+.||||++||+...
T Consensus         3 ~~~~al~~~~~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~~~g~~G~~P~~yv~~~~   60 (452)
T 1fmk_A            3 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD   60 (452)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             eEEEECCccCCCCCCCCCccCCCEEEEeccCCCCceEEEEcCCCcccccCcccccccc
Confidence            4789999999999999999999999999998999999997  8999999999999864

>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}

Probab=98.79  E-value=1.1e-08  Score=84.57  Aligned_cols=67  Identities=16%  Similarity=0.194  Sum_probs=51.1

Q ss_pred             ccccccceEeeeeEEEEecC-----cccceEEEEEeCCeEEEEeecc--CCCCceEEEEEeecCCeeEEEcCCC
Q psy824          447 LIETSSQLIHQGEVIRVTSG-----MWTNTITLFLFDHQLVYCKRDI--LKRNTHVYKARLNIDTSQIINLPDG  513 (518)
Q Consensus       447 l~~~~r~ll~~g~l~~~~~~-----~~~~~~~~fLF~d~ll~~k~~~--~~~~~~~~k~~i~l~~~~v~~~~d~  513 (518)
                      |..|.|+|++.+.|+.+...     +..++|++|||||+|||||.-.  +...+|+++..+||..|.|....+.
T Consensus         6 L~~phRrlvc~~~l~ev~d~~K~~~kg~qqR~~FLFND~LL~TK~~~kkk~~~~Y~vr~~~~L~gm~V~~~e~e   79 (140)
T 3qwm_A            6 LSLPHRRLVCYCRLFEVPDPNKPQKLGLHQREIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLFENQ   79 (140)
T ss_dssp             ----CCCEEEEEEEEECSCTTSCCCTTTTEEEEEEESSCEEEEECCC---CCCCCCCEEEECCTTEEEEEECCS
T ss_pred             eccCCceEEEEEeeeeeccCcccccccccceEEEEecchhhheeecccCCCCCceEEEEEeeecceEEEcccCC
Confidence            67889999999999887432     2357999999999999998322  1357899999999999999887664

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.75  E-value=7.6e-09  Score=107.61  Aligned_cols=58  Identities=26%  Similarity=0.453  Sum_probs=52.9

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecC-CCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL-DRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||+++..+||+|++||+|.|++.. +++||.|+..|+.|+||++||+.+..
T Consensus        43 ~~~~~alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~~~~~G~~P~~yv~~~~~  101 (495)
T 1opk_A           43 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVNS  101 (495)
T ss_dssp             -CEEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEESSS
T ss_pred             CcEEEEeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeeecCCcceecccccccccc
Confidence            45799999999999999999999999999976 78999999999999999999998653

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.74  E-value=2.3e-09  Score=102.91  Aligned_cols=55  Identities=25%  Similarity=0.442  Sum_probs=49.3

Q ss_pred             eEEEEecCCCCCCCC-----CcccCCCCEEEEEEecCCCeeEEEeCC------eeEEEEeeeeecc
Q psy824            7 VLAEAVWDHVAMEAE-----ELGFRAGDVIEVLDTLDRDWWWGTRGE------AFEHLSQIIINHS   61 (518)
Q Consensus         7 ~~~~al~d~~~~~~~-----eL~~~~gd~i~v~~~~~~~Ww~g~~~~------~~g~~p~~~v~~~   61 (518)
                      .+++|+|||.++.++     ||+|++||+|.|+++.++|||.|+..+      ..|+||++++.+.
T Consensus         2 ~~vrAlydy~~~~~~~~p~~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e~   67 (295)
T 1kjw_A            2 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (295)
T ss_dssp             EEEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEEEeeccCCCCCCCCCCcCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHHH
Confidence            579999999999888     999999999999999999999999864      5699999888653

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.73  E-value=1e-08  Score=105.48  Aligned_cols=57  Identities=21%  Similarity=0.451  Sum_probs=51.2

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE--eCCeeEEEEeeeeecc
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEAFEHLSQIIINHS   61 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~--~~~~~g~~p~~~v~~~   61 (518)
                      ....+|+|+|||.|+.++||+|++||+|.|+++ ++|||.|+  .+|+.|+||++||...
T Consensus         6 ~~~~~~~al~~~~~~~~~el~~~~gd~~~v~~~-~~~W~~~~~~~~g~~G~~P~~yv~~~   64 (454)
T 1qcf_A            6 GIRIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARV   64 (454)
T ss_dssp             CCCCEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEET
T ss_pred             CCCeEEEECcccCCcCCCcCcccCCCEEEEEec-CCCCeEEEECCCCceEEecchhcccc
Confidence            345679999999999999999999999999998 57999999  6888999999999853

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.73  E-value=1e-08  Score=106.69  Aligned_cols=56  Identities=20%  Similarity=0.249  Sum_probs=51.2

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEec-CCCeeEEEeCCeeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL-DRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~-~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ..+|+|+|||+|+.++||+|++||+|.|+++. +++||.|+..|+.|+||++||+..
T Consensus        43 ~~~~~alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~~~~~G~~P~~yv~~~   99 (495)
T 1opk_A           43 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV   99 (495)
T ss_dssp             -CEEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEES
T ss_pred             CcEEEEeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeeecCCcceecccccccc
Confidence            45799999999999999999999999999987 789999999999999999999853

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.69  E-value=6e-09  Score=79.80  Aligned_cols=57  Identities=12%  Similarity=0.150  Sum_probs=49.1

Q ss_pred             eeEEEEeecC--CCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEcc
Q psy824          139 VVLAEAVWDH--VAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRV  195 (518)
Q Consensus       139 ~~~~~a~~~~--~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~  195 (518)
                      ...+.|+|+|  ......+|+|++|+++.|++..+.+||.++ ..|+.|+||.+||..+.
T Consensus        39 l~~~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~~wwLcRNs~GkyGyVP~~yl~~~d   98 (102)
T 1ri9_A           39 LYSTKVTTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYLADND   98 (102)
T ss_dssp             SSCCBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGSCC--
T ss_pred             EEEEEEeeccccccCCcccCCcCCCCEEEEEEeCCCCEEEEECCCCCCCceeHHHhcccc
Confidence            3456788888  666788999999999999999999999999 79999999999998654

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.67  E-value=2e-08  Score=103.34  Aligned_cols=56  Identities=30%  Similarity=0.636  Sum_probs=51.7

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE--ECCeeEEEcCCCEEEccc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~  196 (518)
                      ..++|+|||.++.++||+|++||+|.|++. ++|||.|+  .+|+.|+||++||+.+..
T Consensus         9 ~~~~al~~~~~~~~~el~~~~gd~~~v~~~-~~~W~~~~~~~~g~~G~~P~~yv~~~~~   66 (454)
T 1qcf_A            9 IIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDS   66 (454)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             eEEEECcccCCcCCCcCcccCCCEEEEEec-CCCCeEEEECCCCceEEecchhcccccc
Confidence            579999999999999999999999999998 57999999  689999999999998753

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=98.67  E-value=2.4e-09  Score=110.50  Aligned_cols=56  Identities=29%  Similarity=0.536  Sum_probs=0.0

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCC-CCeEEEEEC-CeeEEEcCCCEEEc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRG-EASGWFPSAFVRLR  194 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~~~-g~~G~~P~~~v~~~  194 (518)
                      ...++|+|||.+...+||+|.+||+|.|+...+ +|||.|+.. |+.||||++||+.+
T Consensus       428 ~~~~~alydy~~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~~g~~G~~P~nyv~~i  485 (486)
T 3haj_A          428 EVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEAI  485 (486)
T ss_dssp             ----------------------------------------------------------
T ss_pred             CeEEEEccccCCCCCCcCccCCCCEEEEEEecCCCCeeEEEeCCCCEEEEeHHHceeC
Confidence            567999999999999999999999999998874 699999977 99999999999875

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=98.64  E-value=3.3e-09  Score=109.52  Aligned_cols=55  Identities=24%  Similarity=0.386  Sum_probs=0.0

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEEeC-CeeEEEEeeeeec
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRG-EAFEHLSQIIINH   60 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~-~~~g~~p~~~v~~   60 (518)
                      ++.|+|+|||.++.++||+|.+||+|.|+.+.+ +|||.|++. |..|+||++||+.
T Consensus       428 ~~~~~alydy~~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~~g~~G~~P~nyv~~  484 (486)
T 3haj_A          428 EVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYVEA  484 (486)
T ss_dssp             ---------------------------------------------------------
T ss_pred             CeEEEEccccCCCCCCcCccCCCCEEEEEEecCCCCeeEEEeCCCCEEEEeHHHcee
Confidence            567999999999999999999999999999875 599999998 8889999999874

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.60  E-value=1e-08  Score=98.28  Aligned_cols=54  Identities=31%  Similarity=0.551  Sum_probs=48.4

Q ss_pred             eEEEEeecCCCCCCC-----CCCCCCCCEEEEEecCCCCeEEEEEC------CeeEEEcCCCEEE
Q psy824          140 VLAEAVWDHVAMEAE-----ELGFRAGDVIEVLDTLDRDWWWGTRG------EASGWFPSAFVRL  193 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~-----eL~~~~g~~i~v~~~~~~~w~~~~~~------g~~G~~P~~~v~~  193 (518)
                      .+++|+|||+++.++     +|+|++||++.|++..++|||.|+..      |+.|+||++|+..
T Consensus         2 ~~vrAlydy~~~~~~~~p~~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e   66 (295)
T 1kjw_A            2 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE   66 (295)
T ss_dssp             EEEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHH
T ss_pred             EEEEEeeccCCCCCCCCCCcCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHH
Confidence            468999999999887     99999999999999999999999954      3789999999853

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=98.59  E-value=4.9e-08  Score=93.32  Aligned_cols=53  Identities=19%  Similarity=0.453  Sum_probs=46.4

Q ss_pred             CceEEEEecCCCCCCCCC-------cccCCCCEEEEEEecCCCeeEEEe---CCeeEEEEeee
Q psy824            5 FVVLAEAVWDHVAMEAEE-------LGFRAGDVIEVLDTLDRDWWWGTR---GEAFEHLSQII   57 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~e-------L~~~~gd~i~v~~~~~~~Ww~g~~---~~~~g~~p~~~   57 (518)
                      ...+++|+|||.++.+++       |+|++||++.|+++.|++||.|+.   +|..|++|+..
T Consensus        37 ~~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           37 VAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             CCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             ccEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHH
Confidence            457899999999998775       999999999999999999999998   45679999543

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.57  E-value=1.7e-07  Score=69.94  Aligned_cols=59  Identities=20%  Similarity=0.369  Sum_probs=49.1

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCC----CCeEEEEECCeeEEEcCCCEEEcccCC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD----RDWWWGTRGEASGWFPSAFVRLRVSQE  198 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~----~~w~~~~~~g~~G~~P~~~v~~~~~~~  198 (518)
                      ....+..++.+...-||++++||+|.|+++.|    ++||++..+|+.||||++|++++....
T Consensus        18 ~LY~~t~~~~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdtgg~~GyvPs~yLe~~~~~~   80 (92)
T 1ug1_A           18 KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRR   80 (92)
T ss_dssp             GEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCCS
T ss_pred             heEEeccCcCCCCceeeeecCCCEEEEEecCCCCCCCcceEEECCCcEEeeEhhhceEcccCC
Confidence            35666677777778899999999999999875    467777789999999999999997653

>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1

Probab=98.52  E-value=1.1e-07  Score=77.20  Aligned_cols=67  Identities=10%  Similarity=0.138  Sum_probs=55.4

Q ss_pred             ccccccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeecc-CCCCceEEEEEeecCCeeEEEcCC-CC
Q psy824          447 LIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDI-LKRNTHVYKARLNIDTSQIINLPD-GK  514 (518)
Q Consensus       447 l~~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~-~~~~~~~~k~~i~l~~~~v~~~~d-~~  514 (518)
                      |... ++|+++|.+.+.....+.++||+|||.+.||+||++. .....|.||..|.|+++.|.+..+ |+
T Consensus         4 L~~~-G~Ll~q~~f~V~~~~~k~~eR~vFLFe~~ilf~K~~~~~~~~~Y~~K~~ikl~~~~lte~~~~~d   72 (119)
T 1fho_A            4 TGKL-GRIIRHDAFQVWEGDEPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQHTTDED   72 (119)
T ss_dssp             CCCC-CCSSEEEEEEECSTTCSCEEEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEECTTCC
T ss_pred             hHHc-CCccccCceEEEeCCCCcceEEEEEecCcEEEEEEecCCCCCcEEEeeEEeeceeEEEecCCCCC
Confidence            4444 6899999999887645578999999999999999763 234789999999999999999876 53

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.51  E-value=5.3e-08  Score=73.95  Aligned_cols=57  Identities=28%  Similarity=0.499  Sum_probs=50.0

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCC--CCeEEEE-ECCeeEEEcCCCEEEcc
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGT-RGEASGWFPSAFVRLRV  195 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~--~~w~~~~-~~g~~G~~P~~~v~~~~  195 (518)
                      ....+.|+|+ ...+..+|+|++|+++.|+...+  +|||.++ ..|+.|+||.+||++-.
T Consensus        27 vl~~a~a~~~-~k~g~~dLp~~~GE~LeII~~~e~p~g~Wl~RN~~G~~GyVp~~~v~vd~   86 (96)
T 2gtj_A           27 VIHLAKACCD-VKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEIDY   86 (96)
T ss_dssp             CCEEEEESSC-EECTTSCCEECTTCCEEEEECTTCSSSCCEEECTTCCBCCCCGGGEEECS
T ss_pred             eEEEEEEeec-CCCCcccCCcCCCCEEEEEEccCCCCCeEEEECCCCCCCccchhhEEEEh
Confidence            3458899999 56688999999999999999876  7899999 79999999999998643

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.51  E-value=6.8e-08  Score=102.46  Aligned_cols=66  Identities=23%  Similarity=0.292  Sum_probs=54.6

Q ss_pred             eeEEEEeecCC---CCCCCCCCCCCCCEEEEEec-----CCCCeEEEE--ECCeeEEEcCCCEEEcccCCCchHHH
Q psy824          139 VVLAEAVWDHV---AMEAEELGFRAGDVIEVLDT-----LDRDWWWGT--RGEASGWFPSAFVRLRVSQEDTVEDC  204 (518)
Q Consensus       139 ~~~~~a~~~~~---~~~~~eL~~~~g~~i~v~~~-----~~~~w~~~~--~~g~~G~~P~~~v~~~~~~~~~~~~~  204 (518)
                      ..+|+|+|||.   +.++++|+|++||+|.+...     .++|||.|+  .+|+.|+||++||.++..-..|..+.
T Consensus       573 s~~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g~~G~fP~~~V~~lptl~~p~~~~  648 (655)
T 3pvl_A          573 SKYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVMPTVTLPPREI  648 (655)
T ss_dssp             CCEEEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTCCEEEEEGGGEEECCCSSCCCHHH
T ss_pred             chhhhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCCceEEeEhhhEEECCCCCCCcHHH
Confidence            46899999999   67888999999999999887     468999999  78999999999999997655554443

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.44  E-value=1.3e-07  Score=72.36  Aligned_cols=54  Identities=11%  Similarity=0.133  Sum_probs=47.0

Q ss_pred             ceEEEEecCC--CCCCCCCcccCCCCEEEEEEecCCCeeEEEeC-CeeEEEEeeeee
Q psy824            6 VVLAEAVWDH--VAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG-EAFEHLSQIIIN   59 (518)
Q Consensus         6 ~~~~~al~d~--~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~-~~~g~~p~~~v~   59 (518)
                      ...++|+|+|  ......||+|++|++|.|+...+.+||.++.. |+.|+.|..++.
T Consensus        39 l~~~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~~wwLcRNs~GkyGyVP~~yl~   95 (102)
T 1ri9_A           39 LYSTKVTTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYLA   95 (102)
T ss_dssp             SSCCBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGSC
T ss_pred             EEEEEEeeccccccCCcccCCcCCCCEEEEEEeCCCCEEEEECCCCCCCceeHHHhc
Confidence            4557889999  67789999999999999999999999999984 678999977766

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=98.43  E-value=2.2e-07  Score=88.89  Aligned_cols=53  Identities=25%  Similarity=0.550  Sum_probs=47.6

Q ss_pred             ceeEEEEeecCCCCCCCC-------CCCCCCCEEEEEecCCCCeEEEEE---CCeeEEEcCCC
Q psy824          138 FVVLAEAVWDHVAMEAEE-------LGFRAGDVIEVLDTLDRDWWWGTR---GEASGWFPSAF  190 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~e-------L~~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~  190 (518)
                      ...+++|+|||++..+++       |+|++||++.|++..+++||.|+.   +|..|+||+++
T Consensus        37 ~~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           37 VAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             CCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             ccEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHH
Confidence            457899999999997664       999999999999999999999996   57899999987

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.40  E-value=1.2e-07  Score=100.57  Aligned_cols=55  Identities=20%  Similarity=0.234  Sum_probs=47.1

Q ss_pred             eEEEEecCCC---CCCCCCcccCCCCEEEEEEe-----cCCCeeEEE--eCCeeEEEEeeeeecc
Q psy824            7 VLAEAVWDHV---AMEAEELGFRAGDVIEVLDT-----LDRDWWWGT--RGEAFEHLSQIIINHS   61 (518)
Q Consensus         7 ~~~~al~d~~---~~~~~eL~~~~gd~i~v~~~-----~~~~Ww~g~--~~~~~g~~p~~~v~~~   61 (518)
                      .+|+|+|||.   +.++++|+|++||+|.|+..     .++|||.|+  .+|+.|+||+.+|...
T Consensus       574 ~~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g~~G~fP~~~V~~l  638 (655)
T 3pvl_A          574 KYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVM  638 (655)
T ss_dssp             CEEEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             hhhhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCCceEEeEhhhEEEC
Confidence            5899999999   67889999999999999988     468999999  6799999999998854

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.25  E-value=5.4e-07  Score=68.43  Aligned_cols=54  Identities=26%  Similarity=0.484  Sum_probs=46.2

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecC--CCeeEEEeC-CeeEEEEeeeeec
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRG-EAFEHLSQIIINH   60 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~--~~Ww~g~~~-~~~g~~p~~~v~~   60 (518)
                      ...|+|+|+ ......||+|++|++|.|+.+.+  +|||.++.. |..|+.|..+|+.
T Consensus        28 l~~a~a~~~-~k~g~~dLp~~~GE~LeII~~~e~p~g~Wl~RN~~G~~GyVp~~~v~v   84 (96)
T 2gtj_A           28 IHLAKACCD-VKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEI   84 (96)
T ss_dssp             CEEEEESSC-EECTTSCCEECTTCCEEEEECTTCSSSCCEEECTTCCBCCCCGGGEEE
T ss_pred             EEEEEEeec-CCCCcccCCcCCCCEEEEEEccCCCCCeEEEECCCCCCCccchhhEEE
Confidence            457899999 56689999999999999999987  689999985 6679999877774

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.17  E-value=1.9e-06  Score=80.15  Aligned_cols=57  Identities=26%  Similarity=0.691  Sum_probs=51.1

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCC---eEEEEECCeeEEEcCCCEEEccc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~---w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ..+.++|+|.+....+|.++.|++|.|+.+.+++   ||.++.+|+.|+||.+||+.+..
T Consensus       171 ~~~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~~  230 (239)
T 1ycs_B          171 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPR  230 (239)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECCC-
T ss_pred             ceEEEEeccCCCCCCcccccCCCEEEEEEecCCCCCCEEEEEECCcEEEeehHHeeECCc
Confidence            3578999999999999999999999999887655   99999999999999999998743

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=98.16  E-value=1.5e-06  Score=82.73  Aligned_cols=54  Identities=24%  Similarity=0.343  Sum_probs=43.5

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCC---------eeEEEeCC------eeEEEEeeeeec
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---------WWWGTRGE------AFEHLSQIIINH   60 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~---------Ww~g~~~~------~~g~~p~~~v~~   60 (518)
                      .|++|+|||.++.++||+|++||++.|++..++|         ||.+..-+      ..|.+|++++.+
T Consensus         5 fyVRalfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~ae   73 (308)
T 3kfv_A            5 FYIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAE   73 (308)
T ss_dssp             EEEEECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHH
T ss_pred             EEEEEecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHH
Confidence            5889999999999999999999999999988766         99987642      459999877653

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.13  E-value=9.8e-06  Score=60.53  Aligned_cols=54  Identities=17%  Similarity=0.261  Sum_probs=44.9

Q ss_pred             EEEEecCCCCCCCCCcccCCCCEEEEEEecCC----CeeEEEeCCeeEEEEeeeeecc
Q psy824            8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDR----DWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~----~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      .+.+..+|.++.+-||++++||+|.|+.+.|+    +||+...+|..|++|+.|.+..
T Consensus        19 LY~~t~~~~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdtgg~~GyvPs~yLe~~   76 (92)
T 1ug1_A           19 LFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPY   76 (92)
T ss_dssp             EEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEEC
T ss_pred             eEEeccCcCCCCceeeeecCCCEEEEEecCCCCCCCcceEEECCCcEEeeEhhhceEc
Confidence            57778888888999999999999999999873    5555666888899998888844

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.12  E-value=2.2e-06  Score=85.45  Aligned_cols=56  Identities=16%  Similarity=0.129  Sum_probs=48.2

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEe---cCCCeeEEEeCC------eeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDT---LDRDWWWGTRGE------AFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~---~~~~Ww~g~~~~------~~g~~p~~~v~~   60 (518)
                      ...+++|+|||.+..+.+|+|++||++.|+++   .+.+||.++..+      ..|++|++++.+
T Consensus       105 ~~~~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e  169 (391)
T 3tsz_A          105 DSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  169 (391)
T ss_dssp             CCEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHH
T ss_pred             cccccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHH
Confidence            35689999999999999999999999999998   578999998643      359999887764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.06  E-value=4.2e-06  Score=77.76  Aligned_cols=54  Identities=22%  Similarity=0.597  Sum_probs=49.4

Q ss_pred             EEEEecCCCCCCCCCcccCCCCEEEEEEecCCC---eeEEEeCCeeEEEEeeeeecc
Q psy824            8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~---Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      .+.|+|+|.++.+.+|+|++|++|.|+.+.+.+   ||.|+.+|+.|+||..||+.-
T Consensus       172 ~~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~~  228 (239)
T 1ycs_B          172 VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLY  228 (239)
T ss_dssp             EEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECC
T ss_pred             eEEEEeccCCCCCCcccccCCCEEEEEEecCCCCCCEEEEEECCcEEEeehHHeeEC
Confidence            578999999999999999999999999887755   999999999999999998854

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.05  E-value=2.9e-06  Score=91.85  Aligned_cols=56  Identities=25%  Similarity=0.392  Sum_probs=48.7

Q ss_pred             CceEEEEecCCCCCCCCC-----cccCCCCEEEEEEecCCCeeEEEeCC------eeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEE-----LGFRAGDVIEVLDTLDRDWWWGTRGE------AFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~e-----L~~~~gd~i~v~~~~~~~Ww~g~~~~------~~g~~p~~~v~~   60 (518)
                      ...+++|+|||.++.+++     |+|++||++.|+++.+++||.++..+      ..|++|++++.+
T Consensus       426 ~~~~vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e  492 (721)
T 2xkx_A          426 RGFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE  492 (721)
T ss_pred             cceeEEEeeccCcCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHHH
Confidence            357899999999999998     99999999999999999999998753      349999877754

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=98.00  E-value=4.4e-06  Score=79.52  Aligned_cols=50  Identities=22%  Similarity=0.508  Sum_probs=37.8

Q ss_pred             ceEEEEecCCCCCCCC-----CcccCCCCEEEEEEecCCCeeEEEeC---C---eeEEEEe
Q psy824            6 VVLAEAVWDHVAMEAE-----ELGFRAGDVIEVLDTLDRDWWWGTRG---E---AFEHLSQ   55 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~-----eL~~~~gd~i~v~~~~~~~Ww~g~~~---~---~~g~~p~   55 (518)
                      ..|++|+|||.+..++     .|+|++||++.|+++.|++||.++.-   +   ..|++|+
T Consensus         5 s~yvRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS   65 (292)
T 3tvt_A            5 SLYVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPS   65 (292)
T ss_dssp             CCEEEECSCBCC---------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEEC
T ss_pred             eEEEEEeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeC
Confidence            4689999999998766     59999999999999999999999852   1   2499995

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.00  E-value=7.1e-06  Score=82.97  Aligned_cols=56  Identities=16%  Similarity=0.166  Sum_probs=48.2

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEe---cCCCeeEEEe---CC---eeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDT---LDRDWWWGTR---GE---AFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~---~~~~Ww~g~~---~~---~~g~~p~~~v~~   60 (518)
                      ...+++|+|||.+..+.+|+|++||++.|+.+   .+.+||.++.   ++   ..|++|++++.+
T Consensus        97 ~s~yVralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e  161 (468)
T 3shw_A           97 DSFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  161 (468)
T ss_dssp             CCEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHH
T ss_pred             cccccccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHH
Confidence            35689999999999999999999999999998   5789999986   23   469999888764

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.98  E-value=6.2e-06  Score=82.15  Aligned_cols=54  Identities=22%  Similarity=0.350  Sum_probs=47.5

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEec---CCCCeEEEEE-CC-----eeEEEcCCCEE
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDT---LDRDWWWGTR-GE-----ASGWFPSAFVR  192 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~---~~~~w~~~~~-~g-----~~G~~P~~~v~  192 (518)
                      ..+++|+|||++..+.+|+|+.||++.|++.   .+.+||.++. ++     ..|+||++|+.
T Consensus       106 ~~~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~  168 (391)
T 3tsz_A          106 SFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRA  168 (391)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHH
T ss_pred             ccccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHH
Confidence            4688999999999999999999999999998   5789999994 32     48999999985

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=97.97  E-value=5.2e-06  Score=79.04  Aligned_cols=53  Identities=30%  Similarity=0.534  Sum_probs=43.9

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCC---------eEEEEE-C-----CeeEEEcCCCEE
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---------WWWGTR-G-----EASGWFPSAFVR  192 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~---------w~~~~~-~-----g~~G~~P~~~v~  192 (518)
                      .+++|+|||+++.+++|+|++||++.|++..++|         ||.+.. +     +..|++|.+|+.
T Consensus         5 fyVRalfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~a   72 (308)
T 3kfv_A            5 FYIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRA   72 (308)
T ss_dssp             EEEEECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHH
T ss_pred             EEEEEecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHH
Confidence            5788999999999999999999999999987766         999984 2     278999999874

>4gou_A EHRGS-rhogef; RGS domain, DH domain, PH domain, RHO guanine nucleotide EXC factor, signaling protein, GTPase accelerating protein; 2.30A {Entamoeba histolytica}

Probab=97.97  E-value=8.9e-05  Score=66.55  Aligned_cols=171  Identities=14%  Similarity=0.180  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHH
Q psy824          231 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSCIGET  310 (518)
Q Consensus       231 R~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~~~ig~~  310 (518)
                      -..++..|++.|-+||..|..+.+ |-+-+. ...++.++..+.+|..|+-+++.|++|...|+++..     ...+|.-
T Consensus       188 ikslvesliqdecnyvgvltslse-fseimt-kkqilgpdvlkelfdhipvliqhhqkfisslqeaka-----dekvgek  260 (518)
T 4gou_A          188 IKSLVESLIQDECNYVGVLTSLSE-FSEIMT-KKQILGPDVLKELFDHIPVLIQHHQKFISSLQEAKA-----DEKVGEK  260 (518)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HTTCSCHHHHHHHHTTHHHHHHHHHHHHHHHTSTTG-----GGSHHHH
T ss_pred             HHHHHHHHHHhhccceeehhhHHH-HHHHHH-hhhccChHHHHHHHhhchHHHHHHHHHHHHHHHhhh-----hHHHHHh
Confidence            456789999999999999988876 776665 678999999999999999999999999999988753     3568876


Q ss_pred             HHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhc--------------chHHHHHHHHHHHhhccccccCccCCCcc
Q psy824          311 FLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRS--------------LEDKARWLAAFQQERALVEQDREDGLEFA  376 (518)
Q Consensus       311 f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~--------------~~~~~~fl~~~~~~~~~~~~~~l~~~L~~  376 (518)
                      +..-.. |-..+.|        |..+.+..+..+|.-              .+-..+|-++    +.+......-.+|+.
T Consensus       261 lnsglh-flvlyry--------ylrhvpkniaklcsigmtdeievgrelyplpvieefdkq----qkmtkkmsvlqmlvy  327 (518)
T 4gou_A          261 LNSGLH-FLVLYRY--------YLRHVPKNIAKLCSIGMTDEIEVGRELYPLPVIEEFDKQ----QKMTKKMSVLQMLVY  327 (518)
T ss_dssp             HHHHTG-GGGGGHH--------HHTTTTHHHHHHHHHHTSCGGGTTTTTCSHHHHHHHHHH----HHHHTSCCHHHHHHG
T ss_pred             hccCce-ehHHHHH--------HHHhccHHHHHHccCCCcchhhccccccCcchHHHHHHH----HHHHHHHHHHHHHhh
Confidence            654444 3333333        344444443333321              1223334333    233333335667889


Q ss_pred             hhhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q psy824          377 PAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINE  421 (518)
Q Consensus       377 PvQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~  421 (518)
                      |.-|+-.|.-...+.+|-|..+..+-..|+-....+--.-..+|.
T Consensus       328 pyfrvrtyqayvddfikitkkdsqevkelevvhsqlaifqelint  372 (518)
T 4gou_A          328 PYFRVRTYQAYVDDFIKITKKDSQEVKELEVVHSQLAIFQELINT  372 (518)
T ss_dssp             GGGHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhheehhHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999998887777666655555444444554

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.96  E-value=7.4e-06  Score=88.59  Aligned_cols=55  Identities=31%  Similarity=0.514  Sum_probs=48.7

Q ss_pred             ceeEEEEeecCCCCCCCC-----CCCCCCCEEEEEecCCCCeEEEEEC------CeeEEEcCCCEE
Q psy824          138 FVVLAEAVWDHVAMEAEE-----LGFRAGDVIEVLDTLDRDWWWGTRG------EASGWFPSAFVR  192 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~e-----L~~~~g~~i~v~~~~~~~w~~~~~~------g~~G~~P~~~v~  192 (518)
                      ...+++|+|||++..+++     |+|++||++.|++..+++||.++..      +..|+||++|+.
T Consensus       426 ~~~~vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~  491 (721)
T 2xkx_A          426 RGFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV  491 (721)
T ss_pred             cceeEEEeeccCcCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHH
Confidence            356789999999999888     9999999999999999999999943      456999999984

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=97.94  E-value=9.9e-06  Score=74.18  Aligned_cols=56  Identities=23%  Similarity=0.403  Sum_probs=51.8

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      ...+++|+|+|.++.+++|+|++||++.|....+.+||.+...|..|++|..++..
T Consensus        13 ~~~~~~al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~   68 (222)
T 3ehr_A           13 QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE   68 (222)
T ss_dssp             CCEEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHH
T ss_pred             CceEEEEeCCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccc
Confidence            45789999999999999999999999999999999999999999999999877764

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=97.91  E-value=9.4e-06  Score=74.33  Aligned_cols=56  Identities=30%  Similarity=0.574  Sum_probs=51.9

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      ...++++|+|.++...+|++++||++.|....+.+||.+...|+.|++|.+|+...
T Consensus        14 ~~~~~al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~   69 (222)
T 3ehr_A           14 VKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ   69 (222)
T ss_dssp             CEEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHH
T ss_pred             ceEEEEeCCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhcccc
Confidence            46789999999999999999999999999999999999999999999999988543

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.86  E-value=1.3e-05  Score=80.93  Aligned_cols=54  Identities=20%  Similarity=0.307  Sum_probs=47.7

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEec---CCCCeEEEEE---CC---eeEEEcCCCEE
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDT---LDRDWWWGTR---GE---ASGWFPSAFVR  192 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~---~~~~w~~~~~---~g---~~G~~P~~~v~  192 (518)
                      ..+++|+|+|.+..+.+|+|++||++.|++.   .+.+||.++.   ++   ..|+||++|+.
T Consensus        98 s~yVralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~  160 (468)
T 3shw_A           98 SFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRA  160 (468)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHH
T ss_pred             ccccccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHH
Confidence            3688999999999999999999999999998   5789999993   33   68999999985

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.82  E-value=1.4e-05  Score=76.13  Aligned_cols=51  Identities=29%  Similarity=0.603  Sum_probs=38.4

Q ss_pred             eEEEEeecCCCCCCC-----CCCCCCCCEEEEEecCCCCeEEEEE------CCeeEEEcCCC
Q psy824          140 VLAEAVWDHVAMEAE-----ELGFRAGDVIEVLDTLDRDWWWGTR------GEASGWFPSAF  190 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~-----eL~~~~g~~i~v~~~~~~~w~~~~~------~g~~G~~P~~~  190 (518)
                      .+++|+|||++..++     .|+|++||++.|++..+++||.++.      .+..|++|+..
T Consensus         6 ~yvRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~~   67 (292)
T 3tvt_A            6 LYVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKR   67 (292)
T ss_dssp             CEEEECSCBCC---------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECHH
T ss_pred             EEEEEeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeChH
Confidence            689999999998665     6999999999999999999999983      23479999853

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=97.75  E-value=2.9e-05  Score=73.72  Aligned_cols=56  Identities=16%  Similarity=0.136  Sum_probs=46.5

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEccc
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~  196 (518)
                      .+..++|+|||.+.   ++++.+|+.+++++..++.||.++ .+|..|++|++|+.+..+
T Consensus       197 ~~~~v~al~dy~~~---e~~~~kge~~~l~~~s~~~wW~v~~~~G~~g~vPs~~~~ip~p  253 (283)
T 3pe0_A          197 GRLPLLAVCDYKQV---EVTVHKGDECQLVGPAQPSHWKVLSSSGSEAAVPSVCFLVPPP  253 (283)
T ss_dssp             SCEEEEECSCEECS---SCEECTTCEEEEEEECSTTEEEEECC---EEEEEGGGEECCSC
T ss_pred             CCceEEeecCccCC---cccccCCCEEEEeeCCCCCceEEEcCCCCEeeccceEEeeCCC
Confidence            34689999999775   799999999999999888999999 789999999999976543

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=97.51  E-value=0.00035  Score=70.43  Aligned_cols=54  Identities=20%  Similarity=0.250  Sum_probs=48.1

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEcc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRV  195 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~  195 (518)
                      +..++|+|||..   .++++.+||.+++++..++.||.++ .+|..|+||+.|+.+-.
T Consensus       283 ~~~V~alcdy~~---~e~~i~kge~~~L~~ns~~~~W~V~~~~G~~~~vPavcf~ipp  337 (450)
T 3r6n_A          283 PIILRALCDYKQ---DQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLIIPP  337 (450)
T ss_dssp             CCEEEESSCEEE---TTEEECTTCEEEEEECSSSSEEEEECSSSCCEEEEGGGEECCS
T ss_pred             CceEEEeccccC---CeeeEecCCEEEEecCCCCCceEEecCCCCeeccceeEEecCC
Confidence            457899999984   6899999999999999999999999 67899999999997554

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=97.09  E-value=0.00052  Score=65.06  Aligned_cols=54  Identities=13%  Similarity=0.116  Sum_probs=45.3

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCC-eeEEEEeeeeeccC
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-AFEHLSQIIINHSI   62 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~-~~g~~p~~~v~~~~   62 (518)
                      ...++|+|||.+.   |+++.+||.+.+++..+..||..+..+ ..|..|++++..++
T Consensus       198 ~~~v~al~dy~~~---e~~~~kge~~~l~~~s~~~wW~v~~~~G~~g~vPs~~~~ip~  252 (283)
T 3pe0_A          198 RLPLLAVCDYKQV---EVTVHKGDECQLVGPAQPSHWKVLSSSGSEAAVPSVCFLVPP  252 (283)
T ss_dssp             CEEEEECSCEECS---SCEECTTCEEEEEEECSTTEEEEECC---EEEEEGGGEECCS
T ss_pred             CceEEeecCccCC---cccccCCCEEEEeeCCCCCceEEEcCCCCEeeccceEEeeCC
Confidence            3689999999874   899999999999999888999998654 56999988888654

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=95.58  E-value=0.0079  Score=60.54  Aligned_cols=53  Identities=15%  Similarity=0.141  Sum_probs=45.8

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCC-eeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-AFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~-~~g~~p~~~v~~~   61 (518)
                      ...++|||||..   .|+++.+||.++++...+..||..+..+ ..|..|+.++..+
T Consensus       283 ~~~V~alcdy~~---~e~~i~kge~~~L~~ns~~~~W~V~~~~G~~~~vPavcf~ip  336 (450)
T 3r6n_A          283 PIILRALCDYKQ---DQKIVHKGDECILKDNNERSKWYVTGPGGVDMLVPSVGLIIP  336 (450)
T ss_dssp             CCEEEESSCEEE---TTEEECTTCEEEEEECSSSSEEEEECSSSCCEEEEGGGEECC
T ss_pred             CceEEEeccccC---CeeeEecCCEEEEecCCCCCceEEecCCCCeeccceeEEecC
Confidence            467899999994   7999999999999999999999998764 5699998777654

>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}

Probab=94.03  E-value=0.082  Score=38.55  Aligned_cols=38  Identities=13%  Similarity=0.400  Sum_probs=32.7

Q ss_pred             CCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          158 FRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       158 ~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      +.+|+.+.|++.. ++|+..+.+|..||+...|+.....
T Consensus        27 l~~G~~v~v~~~~-~~W~kV~~~g~~GwV~~~yl~~~~~   64 (74)
T 2krs_A           27 LRNNDKVEIIKEV-DGWYEIRFNGKVGYASKSYITIVNE   64 (74)
T ss_dssp             EETTCEEEEEEEE-TTEEEEEETTEEEEECSSSEEESSS
T ss_pred             ECCCCEEEEEEEe-CCEEEEEECCeEEEEEhHHcCCCCC
Confidence            5679999999874 5899999999999999999987653

>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A

Probab=93.97  E-value=0.081  Score=38.82  Aligned_cols=39  Identities=3%  Similarity=0.143  Sum_probs=33.5

Q ss_pred             CCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          157 GFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       157 ~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      .+..|+.|.|++.. .+|+..+.+|..||+...|+.....
T Consensus        28 ~l~~G~~v~vl~~~-~~W~kV~~~g~~GwV~~~yl~~~~~   66 (76)
T 2kt8_A           28 SLSGNTKVTIVGEE-GAFYKIEYKGSHGYVAKEYIKDIKD   66 (76)
T ss_dssp             EECTTCEEEEEEEE-TTEEEEEETTEEEEEEGGGEEEEEC
T ss_pred             EECCCCEEEEEEEe-CCEEEEEECCEEEEEEhHHhCcCCC
Confidence            35689999999874 6899999999999999999987654

>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}

Probab=92.80  E-value=0.037  Score=39.92  Aligned_cols=38  Identities=11%  Similarity=0.260  Sum_probs=31.9

Q ss_pred             CCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcc
Q psy824          157 GFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRV  195 (518)
Q Consensus       157 ~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~  195 (518)
                      .+.+|+.+.|++.. ++|+..+.+|..||++..|+....
T Consensus        27 ~l~~G~~v~v~~~~-~~W~~V~~~G~~GwV~~~~l~~~~   64 (70)
T 2kq8_A           27 ALPQGQKVQVISEN-SGWSKINYNGQTGYIGTRYLSKLE   64 (70)
T ss_dssp             CCCSSSSCCCCEEE-TTEEEEEETTEEEEEETTSCSCCC
T ss_pred             EECCCCEEEEEEec-CCEEEEEECCEEEEEEhHHccchh
Confidence            46788888888764 689999999999999999987654

>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1

Probab=91.25  E-value=1.2  Score=31.22  Aligned_cols=51  Identities=22%  Similarity=0.420  Sum_probs=40.8

Q ss_pred             EEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE------CCeeEEEcCCCE
Q psy824          141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR------GEASGWFPSAFV  191 (518)
Q Consensus       141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~------~g~~G~~P~~~v  191 (518)
                      .+.+..||.|-.++|++...|++|.++.....+...+..      ....||+|..-+
T Consensus         9 ~m~V~~dY~A~ke~eI~v~~ge~Vqila~nqqnm~Lv~~~a~~q~paaegWvPG~vL   65 (74)
T 1wfw_A            9 TMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSIL   65 (74)
T ss_dssp             EEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGC
T ss_pred             cEEEEeeeeeeccceeccccCcEEEEEEecCcceEEEEeecCCCCccccCcccccEe
Confidence            455689999999999999999999999887777666552      236799997654

>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A

Probab=87.58  E-value=0.83  Score=33.28  Aligned_cols=37  Identities=3%  Similarity=0.034  Sum_probs=30.8

Q ss_pred             ccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824           24 GFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus        24 ~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      .+.+|+.|.|+++. ++|+..+.+|..||....|+...
T Consensus        28 ~l~~G~~v~vl~~~-~~W~kV~~~g~~GwV~~~yl~~~   64 (76)
T 2kt8_A           28 SLSGNTKVTIVGEE-GAFYKIEYKGSHGYVAKEYIKDI   64 (76)
T ss_dssp             EECTTCEEEEEEEE-TTEEEEEETTEEEEEEGGGEEEE
T ss_pred             EECCCCEEEEEEEe-CCEEEEEECCEEEEEEhHHhCcC
Confidence            46789999999874 68999999999999997777644

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=87.26  E-value=1.6  Score=34.28  Aligned_cols=57  Identities=18%  Similarity=0.100  Sum_probs=43.1

Q ss_pred             cceEeeeeEEEEecCc-ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCC
Q psy824          452 SQLIHQGEVIRVTSGM-WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPD  512 (518)
Q Consensus       452 r~ll~~g~l~~~~~~~-~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d  512 (518)
                      ...+++|.|.+.+... .-+.|+++|.++.|.+.+...    ....++.|+|..+.|..+++
T Consensus         6 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~----~~~~~g~i~L~~~~v~~~~~   63 (118)
T 1v89_A            6 SGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEE----DTKPQGCMYLPGCTIKEIAT   63 (118)
T ss_dssp             SCEEEEEEEEEECSSSSCEEEEEEEEETTEEEEESSSS----CCSCSEEECSTTEEEEEECC
T ss_pred             CCCcEEEEEEecCCCCCCccEEEEEEECCEEEEEeCCC----CCCceEEEECCCCEEEEcCc
Confidence            4678999999886432 246899999999999987542    23456789999999987654

>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A

Probab=87.12  E-value=2.2  Score=40.45  Aligned_cols=38  Identities=5%  Similarity=0.120  Sum_probs=31.3

Q ss_pred             CCCCCCCEEEEEecCCCCeEEEEE-CCeeEEEcCCCEEEc
Q psy824          156 LGFRAGDVIEVLDTLDRDWWWGTR-GEASGWFPSAFVRLR  194 (518)
Q Consensus       156 L~~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~  194 (518)
                      ..+..|..+.|++. ..+|+.... +|+.||++..++..+
T Consensus       107 ~~l~~Gt~v~v~~~-~~~W~kV~~pdG~~GyV~~~~l~~~  145 (306)
T 3npf_A          107 SDVVAGNRLKWEGS-KGHFYQVSYPDGRKAYLSKSISQPE  145 (306)
T ss_dssp             EEEETTCEEEEEEE-ETTEEEEECTTSCEEEEETTSEEEH
T ss_pred             EEEcCCCEEEEEee-cCCEEEEEcCCCCeEEEEeecccee
Confidence            35678999988875 468999985 899999999999765

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=87.05  E-value=1.3  Score=34.23  Aligned_cols=58  Identities=10%  Similarity=0.103  Sum_probs=42.2

Q ss_pred             cceEeeeeEEEEecCc-ccceEEEEEeCC--eEEEEeeccCCCCceEEEEEeecCCeeEEEcCCC
Q psy824          452 SQLIHQGEVIRVTSGM-WTNTITLFLFDH--QLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG  513 (518)
Q Consensus       452 r~ll~~g~l~~~~~~~-~~~~~~~fLF~d--~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~  513 (518)
                      +..+++|.|.+.+... .-+.|++.|.++  .|.+.+...    ....++.|+|..+.|..+.+.
T Consensus         5 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yyk~~~----~~~~~g~i~L~~~~v~~~~~~   65 (109)
T 2i5f_A            5 GVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAG----AEDPLGAIHLRGCVVTSVESN   65 (109)
T ss_dssp             CCEEEEEEEEEECTTTCCEEEEEEEEETTTTEEEEECTTS----CSSCSEEEECTTCEEEEECC-
T ss_pred             CceeEEEEEEEcCCCCCCceEEEEEEeCCCcEEEEECCCC----CCCccEEEECCCCEEEEccCC
Confidence            5789999999876432 246889999998  788876442    234567899999988776543

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.85  E-value=1.7  Score=34.08  Aligned_cols=59  Identities=14%  Similarity=0.133  Sum_probs=43.5

Q ss_pred             cccceEeeeeEEEEec--CcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCC
Q psy824          450 TSSQLIHQGEVIRVTS--GMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPD  512 (518)
Q Consensus       450 ~~r~ll~~g~l~~~~~--~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d  512 (518)
                      +....+++|.|.+...  .+.-+.|+++|.++.|.+.+...    ....++.|+|..+.|..+..
T Consensus         7 p~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~----~~~~~g~i~L~~~~v~~~~~   67 (117)
T 2d9y_A            7 GNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEK----EESILGSIPLLSFRVAAVQP   67 (117)
T ss_dssp             SSCCCCEEEEEEEECTTSSSCEEEEEEEEETTEEEEESSTT----CCSCCEEEECSSCEEEECCT
T ss_pred             CCCCeeEEEEEEEeCCCCCCCceEEEEEECCCEEEEECCCC----CCCcCCEEEeCCeEEEEcCc
Confidence            4467899999988863  22346889999999998887542    22457789999999877643

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.83  E-value=2  Score=33.60  Aligned_cols=60  Identities=18%  Similarity=0.178  Sum_probs=43.2

Q ss_pred             ccceEeeeeEEEEecCc-ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCee-EEEcCCCC
Q psy824          451 SSQLIHQGEVIRVTSGM-WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQ-IINLPDGK  514 (518)
Q Consensus       451 ~r~ll~~g~l~~~~~~~-~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~-v~~~~d~~  514 (518)
                      +...+++|.|.+.+... .-+.|+++|.++.|.+.+...    ....++.|+|..+. |...++.+
T Consensus         5 ~~~~~~~G~L~K~~~~~~~Wk~R~fvL~~~~L~yy~~~~----~~~~~g~i~L~~~~~v~~~~~~~   66 (115)
T 2dn6_A            5 SSGVLKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSED----LKDKKGDILLDENCCVESLPDKD   66 (115)
T ss_dssp             CCSCSEEEEEEEECTTSSCEEEEEEEECSSCEEEESSTT----CSSEEEEECCCTTCEEEEECCCT
T ss_pred             CCCceEEEEEEecCCCCCCcEEeEEEEECCEEEEeCCCC----CcccCcEEEecCcEEEEECCCCC
Confidence            35678999998876532 246899999999999987542    23468899999864 55555543

>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1

Probab=86.67  E-value=2.2  Score=29.82  Aligned_cols=37  Identities=19%  Similarity=0.277  Sum_probs=31.1

Q ss_pred             EEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEE
Q psy824            8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG   44 (518)
Q Consensus         8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g   44 (518)
                      ...+..||.|-.++|++...|++|.++.....+-+..
T Consensus         9 ~m~V~~dY~A~ke~eI~v~~ge~Vqila~nqqnm~Lv   45 (74)
T 1wfw_A            9 TMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLV   45 (74)
T ss_dssp             EEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEE
T ss_pred             cEEEEeeeeeeccceeccccCcEEEEEEecCcceEEE
Confidence            3455899999999999999999999998877666544

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*

Probab=86.40  E-value=0.35  Score=39.08  Aligned_cols=31  Identities=19%  Similarity=0.390  Sum_probs=21.6

Q ss_pred             CCCcccCCCCEEEEEEecCC----CeeEEEeCCee
Q psy824           20 AEELGFRAGDVIEVLDTLDR----DWWWGTRGEAF   50 (518)
Q Consensus        20 ~~eL~~~~gd~i~v~~~~~~----~Ww~g~~~~~~   50 (518)
                      ..+..|..||.|+|..+.++    |||.|+.....
T Consensus        56 ~~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k   90 (128)
T 3h8z_A           56 DYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMK   90 (128)
T ss_dssp             ----CCCTTCEEEEEECC---CCCEEEEEEEEEEE
T ss_pred             ccccCCCCCCEEEEEecCCCCCcCccEEEEEEEee
Confidence            34578999999999998766    99999876544

>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}

Probab=86.34  E-value=1  Score=32.54  Aligned_cols=38  Identities=16%  Similarity=0.214  Sum_probs=30.9

Q ss_pred             ccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824           24 GFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus        24 ~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      .+.+|+.+.|++.. ++|++.+.+|..||..+.++....
T Consensus        26 ~l~~G~~v~v~~~~-~~W~kV~~~g~~GwV~~~yl~~~~   63 (74)
T 2krs_A           26 TLRNNDKVEIIKEV-DGWYEIRFNGKVGYASKSYITIVN   63 (74)
T ss_dssp             EEETTCEEEEEEEE-TTEEEEEETTEEEEECSSSEEESS
T ss_pred             EECCCCEEEEEEEe-CCEEEEEECCeEEEEEhHHcCCCC
Confidence            46689999999874 589999999999999977766443

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=85.50  E-value=2.8  Score=33.56  Aligned_cols=56  Identities=20%  Similarity=0.242  Sum_probs=43.5

Q ss_pred             eEeeeeEEEEecC--cc-cceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCC
Q psy824          454 LIHQGEVIRVTSG--MW-TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG  513 (518)
Q Consensus       454 ll~~g~l~~~~~~--~~-~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~  513 (518)
                      .++.|.|.+...+  +. .+.|+++|=.++|.+-|-..    ...-++.|||.++.|++++++
T Consensus        12 VirkGWL~k~~~g~~k~~wk~rWFVLt~~~L~yyKd~~----eke~~G~IpL~~~~vr~v~~~   70 (125)
T 1dyn_A           12 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDE----EKEKKYMLSVDNLKLRDVEKG   70 (125)
T ss_dssp             EEEEEEEEESCCCGGGTSSEEEEEEEESSEEEEESSTT----CSCEEEEEECTTEEEEECCSC
T ss_pred             eEEEEEEEEecCccccCCceeeEEEEeccceeeecCCc----ccccceEEECCCceEeccCCC
Confidence            7999999985333  22 56889999999999987542    234677899999999999886

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=84.87  E-value=3.8  Score=34.95  Aligned_cols=57  Identities=12%  Similarity=0.228  Sum_probs=42.2

Q ss_pred             ceEeeeeEEEEecC------cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEE
Q psy824          453 QLIHQGEVIRVTSG------MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIIN  509 (518)
Q Consensus       453 ~ll~~g~l~~~~~~------~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~  509 (518)
                      .+|++|.|.+.+.+      +.-+.|+++|-++.|.+.+....+......++.|+|.++.+++
T Consensus         2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~~~~~~~G~I~L~~~~~ve   64 (169)
T 1btk_A            2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVE   64 (169)
T ss_dssp             CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEE
T ss_pred             ceEEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCccCCCCceeeEEECcceEEEE
Confidence            36889999997543      2246899999999999998632112356789999999998654

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=84.86  E-value=1.4  Score=33.93  Aligned_cols=55  Identities=13%  Similarity=0.065  Sum_probs=41.5

Q ss_pred             ceEeeeeEEEEecC-----cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcC
Q psy824          453 QLIHQGEVIRVTSG-----MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLP  511 (518)
Q Consensus       453 ~ll~~g~l~~~~~~-----~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~  511 (518)
                      ..+++|.|.+.+.+     +.-+.|++.|-++.|.+.+...    ....++.|+|.++.|...+
T Consensus         2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~----~~~~~g~i~L~~~~v~~~~   61 (108)
T 1u5d_A            2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEK----SKQPKGTFLIKGYSVRMAP   61 (108)
T ss_dssp             CEEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTT----CSSCSEEEECTTCEEEECG
T ss_pred             CccEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCC----CCCCCEEEEecceEEEeCC
Confidence            47899999888753     2346899999999999987542    2335678999999988764

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=84.85  E-value=1.1  Score=35.98  Aligned_cols=62  Identities=16%  Similarity=0.156  Sum_probs=43.2

Q ss_pred             ccccceEeeeeEEEEecCc-ccceEEEEEeCC--eEEEEeeccCCCCceEEEEEeecCCeeEEEcCCC
Q psy824          449 ETSSQLIHQGEVIRVTSGM-WTNTITLFLFDH--QLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG  513 (518)
Q Consensus       449 ~~~r~ll~~g~l~~~~~~~-~~~~~~~fLF~d--~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~  513 (518)
                      ...+..+++|.|.+.+... .-+.|+++|.+|  .|.+.+..   ......++.|+|..+.|..+++.
T Consensus        13 ~~~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~d~~~L~yy~~~---~~~~~~~g~i~L~~~~v~~~~~~   77 (129)
T 1x1g_A           13 ELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPS---KEENRPVGGFSLRGSLVSALEDN   77 (129)
T ss_dssp             TTCSEEEEEEEEEEECSSSSSEEEEEEEEEESSCEEEEECSS---SCCSSCSCCEESTTCCCEECCSS
T ss_pred             ccCCCEEEEEEEEEECCCCCCeeeEEEEEeCCCCeEEEeCCC---CcCCccceEEECcCCEEEEeCCC
Confidence            3457899999999986432 246889999965  66666543   12234567799999888877654

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.28  E-value=2.7  Score=33.23  Aligned_cols=59  Identities=14%  Similarity=0.160  Sum_probs=43.3

Q ss_pred             cccceEeeeeEEEEecC--cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCC
Q psy824          450 TSSQLIHQGEVIRVTSG--MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPD  512 (518)
Q Consensus       450 ~~r~ll~~g~l~~~~~~--~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d  512 (518)
                      +....+++|.|.+...+  +.-+.|+++|-++.|.+.+...    ....++.|+|..+.|..+..
T Consensus        18 ~~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~----~~~~~g~i~L~~~~v~~~~~   78 (122)
T 2yry_A           18 PNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEK----EESILGSIPLLSFRVAAVQP   78 (122)
T ss_dssp             TTCCEEEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTT----CCSCCEEEESTTCCCEECCT
T ss_pred             CCCCccEEEEEEEECCCCCCCcEEEEEEEeCCEEEEECCCC----CCCcccEEEcCCCEEEEcCc
Confidence            44678999999988632  2346889999999988886542    22357889999998877643

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=83.48  E-value=2.4  Score=36.03  Aligned_cols=56  Identities=11%  Similarity=0.128  Sum_probs=40.5

Q ss_pred             cceEeeeeEEEEecCcc------cceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEc
Q psy824          452 SQLIHQGEVIRVTSGMW------TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINL  510 (518)
Q Consensus       452 r~ll~~g~l~~~~~~~~------~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~  510 (518)
                      ...|++|.|++.+.+++      -+.|++.|-++.|.+.+.+.   .....++.|+|..+.+.+.
T Consensus        13 ~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~---~~~~~~G~I~L~~~~~v~~   74 (164)
T 2lul_A           13 FNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRA---EKKYRKGFIDVSKIKCVEI   74 (164)
T ss_dssp             SSEEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCS---SSCCCCCEEEGGGCCEEEE
T ss_pred             CCeeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccC---cccccccEEEEeeeEEEEe
Confidence            46789999988866532      25799999999999987542   2223467899998875543

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=82.20  E-value=2.6  Score=33.81  Aligned_cols=59  Identities=10%  Similarity=0.128  Sum_probs=42.9

Q ss_pred             ccceEeeeeEEEEecCc-ccceEEEEEeCC--eEEEEeeccCCCCceEEEEEeecCCeeEEEcCCC
Q psy824          451 SSQLIHQGEVIRVTSGM-WTNTITLFLFDH--QLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG  513 (518)
Q Consensus       451 ~r~ll~~g~l~~~~~~~-~~~~~~~fLF~d--~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~  513 (518)
                      ....+++|.|.+.+... .-+.|+++|.++  .|.+.+..    .....++.|+|..+.|..+.+.
T Consensus        15 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~----~~~~~~g~i~L~~~~v~~~~~~   76 (129)
T 1x05_A           15 RGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPA----GAEDPLGAIHLRGCVVTSVESN   76 (129)
T ss_dssp             CSEEEEEEEEEECCSSCCCCEEEEEEEEETTTEEEEECSS----CCSSCSEEEECTTCEEEECCCC
T ss_pred             cCCceEEEEEEecCCCCCCCeeEEEEEeCCCCEEEEECCC----CCCcceeEEEccCCEEEEccCC
Confidence            36789999999875432 246889999988  77777643    2234577899999998877554

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=81.79  E-value=4  Score=32.27  Aligned_cols=59  Identities=14%  Similarity=0.022  Sum_probs=43.6

Q ss_pred             cccceEeeeeEEEEecC--cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCC
Q psy824          450 TSSQLIHQGEVIRVTSG--MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPD  512 (518)
Q Consensus       450 ~~r~ll~~g~l~~~~~~--~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d  512 (518)
                      |....+++|.|.+.+.+  +.-+.|++.|-++.|.+.+...    ....++.|+|..+.|...++
T Consensus         7 p~~~~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~~----~~~~~g~i~l~~~~v~~~~~   67 (123)
T 1upq_A            7 PNLPVHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSR----EESVLGSVLLPSYNIRPDGP   67 (123)
T ss_dssp             TTSCEEEEEEEEEECSSSSCCEEEEEEEEETTEEEEESSTT----CCSCCEEEEGGGCEEEECCS
T ss_pred             CCCCceEEEEEEeeCCCCCCCceeEEEEEeCCEEEEECCCC----CcccceEEECCCCEEEECCC
Confidence            44568999999988642  2246889999999998887542    23457789999999887754

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=81.38  E-value=3.2  Score=33.10  Aligned_cols=59  Identities=15%  Similarity=0.142  Sum_probs=44.3

Q ss_pred             cccceEeeeeEEEEecC--cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCC
Q psy824          450 TSSQLIHQGEVIRVTSG--MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPD  512 (518)
Q Consensus       450 ~~r~ll~~g~l~~~~~~--~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d  512 (518)
                      +....+++|.|.+....  +.-+.|+++|-++.|.+.+...    ....++.|+|..+.|..+++
T Consensus        17 ~~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~----~~~~~g~i~L~~~~v~~~~~   77 (128)
T 2dkp_A           17 PNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEK----EEGILGSILLPSFQIALLTS   77 (128)
T ss_dssp             TTSCCCEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTT----CCSEEEEECGGGSEEEECCG
T ss_pred             CCCCcEEEEEEEEeCCCCCCCceeEEEEEeCCEEEEECCCC----CcccceEEEcCceEEEEcCC
Confidence            45678999999888652  2346889999999998887542    23468899999998877653

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=81.01  E-value=2.7  Score=33.46  Aligned_cols=57  Identities=12%  Similarity=0.122  Sum_probs=41.9

Q ss_pred             ceEeeeeEEEEecCc-ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCC
Q psy824          453 QLIHQGEVIRVTSGM-WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG  513 (518)
Q Consensus       453 ~ll~~g~l~~~~~~~-~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~  513 (518)
                      ..+++|.|.+.+... .-+.|+++|-++.|.+.+...    ....++.|+|.++.|..+++.
T Consensus         4 ~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~----~~~~~g~i~L~~~~v~~~~~~   61 (127)
T 1fgy_A            4 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT----DKEPRGIIPLENLSIREVLDP   61 (127)
T ss_dssp             SCSEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTT----CSSCSEEEECTTCEEEEECCS
T ss_pred             CCceEeEEEEECCCCCCeEEEEEEEECCEEEEeCCCC----CCCcceEEECCceEEEEccCC
Confidence            457889998876442 246899999999998887542    133567899999998887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	518
d2dfka1	203	a.87.1.1 (A:37-239) Rho guanine nucleotide exchang	2e-31
d1txda1	234	a.87.1.1 (A:766-999) Rho guanine nucleotide exchan	2e-28
d1ki1b1	210	a.87.1.1 (B:1229-1438) GEF of intersectin {Human (	2e-27
d1xcga1	228	a.87.1.1 (A:714-941) Rho guanine nucleotide exchan	3e-27
d1by1a_	209	a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxI	9e-27
d1foea1	206	a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma in	2e-26
d1f5xa_	208	a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [Ta	9e-26
d1dbha1	207	a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {H	3e-25
d1ntya1	184	a.87.1.1 (A:1231-1414) Triple functional domain pr	4e-18
d1kz7a1	195	a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse	2e-17
d2dfka2	162	b.55.1.1 (A:240-401) Rho guanine nucleotide exchan	8e-17
d2dfka2	162	b.55.1.1 (A:240-401) Rho guanine nucleotide exchan	2e-12
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	1e-15
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	1e-08
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	9e-15
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	7e-09
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	1e-14
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	8e-09
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-14
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	6e-08
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	2e-14
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	8e-09
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	2e-14
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	2e-08
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	4e-14
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	2e-08
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	4e-14
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	4e-07
d1dbha2	133	b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {H	4e-14
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	5e-14
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	3e-08
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	8e-14
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	4e-07
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	2e-13
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	1e-07
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	2e-13
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	3e-07
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	3e-13
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	3e-07
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	3e-13
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	1e-06
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	4e-13
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	2e-08
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	6e-13
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	3e-06
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	8e-13
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	4e-08
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	8e-13
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	1e-08
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	1e-12
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	3e-08
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	3e-12
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	5e-08
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	3e-12
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	4e-08
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	3e-12
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	5e-07
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	6e-12
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	1e-06
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	7e-12
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	3e-07
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	8e-12
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	1e-07
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	8e-12
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	2e-07
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	1e-11
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	4e-07
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-11
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	9e-07
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	2e-11
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	8e-07
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	3e-11
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	5e-06
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	4e-11
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	2e-05
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	4e-11
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	9e-05
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	4e-11
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	7e-07
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	8e-11
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	5e-06
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	2e-10
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	1e-04
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	4e-10
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	1e-05
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	4e-10
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	8e-06
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	4e-10
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	4e-05
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	5e-10
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	1e-06
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	2e-09
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	7e-06
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	2e-09
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	1e-04
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	4e-09
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	2e-04
d1v61a_	132	b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (M	3e-08
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	5e-08
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	4e-05
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	2e-07
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	2e-06
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	0.003
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	3e-06
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	6e-04
d1ntya2	121	b.55.1.1 (A:1415-1535) Triple functional domain pr	5e-06
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	5e-06
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	4e-05
d1zc3b1	109	b.55.1.1 (B:171-279) Exocyst complex protein EXO84	8e-05
d1zc3b1	109	b.55.1.1 (B:171-279) Exocyst complex protein EXO84	0.003
d1vyua1	136	b.34.2.1 (A:39-174) SH3-like domain of the L-type	2e-04

>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 203

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  118 bits (296), Expect = 2e-31
 Identities = 71/213 (33%), Positives = 107/213 (50%), Gaps = 24/213 (11%)

Query: 223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDI 282
            L + DQ+R+ V+ E+++TER ++K L D+ EGYL +CR+R DMFS EQ++ IFGN+EDI
Sbjct: 7   PLQNRDQMRANVINEIMSTERHYIKHLKDICEGYLKQCRKRRDMFSDEQLKVIFGNIEDI 66

Query: 283 LAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL 342
             FQ  F+ DLE + + D P+ S IG  FL+H+ GF  +      H             L
Sbjct: 67  YRFQMGFVRDLEKQYNNDDPHLSEIGPCFLEHQDGFWIYSEYCNNH-------LDACMEL 119

Query: 343 FCCRSLEDKARWLAAFQQERALVEQDREDGL--------EFAPAAKELARMSAARCHSSR 394
                      +  A +  + +++   +  L        ++     EL + +        
Sbjct: 120 SKLMKDSRYQHFFEACRLLQQMIDIAIDGFLLTPVQKICKYPLQLAELLKYT-------- 171

Query: 395 PPTDHPDYVKITEALEAMRDVAMLINERKRRME 427
              DH DY  +  AL  MR+V   INERKRR+E
Sbjct: 172 -AQDHSDYRYVAAALAVMRNVTQQINERKRRLE 203

>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]} Length = 234

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

 Score =  111 bits (277), Expect = 2e-28
 Identities = 47/232 (20%), Positives = 92/232 (39%), Gaps = 10/232 (4%)

Query: 213 SKTLRRRTSISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQI 272
            + + R   + L   +  R  V+ EL  TER  V+ L  + + +     R   + SP ++
Sbjct: 5   QQLVSREVLLGLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFYQRVSREG-ILSPSEL 63

Query: 273 QTIFGNLEDILAFQSSFLEDLE-TKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIK 331
           + IF NLEDIL       E ++  +   +      IGE  L   SG        ++HA  
Sbjct: 64  RKIFSNLEDILQLHIGLNEQMKAVRKRNETSVIDQIGEDLLTWFSGPGEE---KLKHAAA 120

Query: 332 IHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCH 391
             CS++   L       +  +R+    Q   +     R    +  P   ++ R++     
Sbjct: 121 TFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQLKDIIP--TQMQRLTKYPLL 178

Query: 392 SSR---PPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVE 440
                       +  K+ +A +  R +   +N+  +  E+ ++L  +Q+R++
Sbjct: 179 LDNIAKYTEWPTEREKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLD 230

>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Length = 210

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 2e-27
 Identities = 36/211 (17%), Positives = 76/211 (36%), Gaps = 16/211 (7%)

Query: 231 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFL 290
           R   + ELI TE ++V  L  V+E +       +++ + +++  IF N ++++      L
Sbjct: 10  RQGYIHELIVTEENYVNDLQLVTEIFQKPLME-SELLTEKEVAMIFVNWKELIMCNIKLL 68

Query: 291 EDLE--TKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSL 348
           + L    K+  +      IG+          P+            CS +        +  
Sbjct: 69  KALRVRKKMSGEKMPVKMIGDILSAQLPHMQPY---------IRFCSRQLNGAALIQQKT 119

Query: 349 EDKARWLAAFQQERALVEQDREDGLEFAPA-AKELARMSA--ARCHSSRPPTDHPDYVKI 405
           ++   +    ++              F     + + R          + P  +HPD+  +
Sbjct: 120 DEAPDFKEFVKRLEMDPRCKGMPLSSFILKPMQRVTRYPLIIKNILENTPE-NHPDHSHL 178

Query: 406 TEALEAMRDVAMLINERKRRMESLEKLAAWQ 436
             ALE   ++   +NE  R  E+ ++L   Q
Sbjct: 179 KHALEKAEELCSQVNEGVREKENSDRLEWIQ 209

>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 3e-27
 Identities = 36/222 (16%), Positives = 91/222 (40%), Gaps = 14/222 (6%)

Query: 225 LSNDQV-RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDIL 283
           L+  ++ R  V+ EL  TE   ++ L  +   +  +  ++ ++   E++  +F NL +++
Sbjct: 15  LTQREIDRQEVINELFVTEASHLRTLRVLDLIFY-QRMKKENLMPREELARLFPNLPELI 73

Query: 284 AFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLF 343
              +S+ E ++ KL  + P    I +  L    G        ++      CS +   L  
Sbjct: 74  EIHNSWCEAMK-KLREEGPIIKEISDLMLARFDGPA---REELQQVAAQFCSYQSIALEL 129

Query: 344 CCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELAR-----MSAARCHSSRPPTD 398
                  ++R+    Q+  +  +  R    +   +  +        + +   H+      
Sbjct: 130 IKTKQRKESRFQLFMQEAESHPQCRRLQLRDLIISEMQRLTKYPLLLESIIKHT---EGG 186

Query: 399 HPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVE 440
             ++ K+  A +  R++   +NE  ++ E+  +L  +Q+R++
Sbjct: 187 TSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLD 228

>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]} Length = 209

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: beta-pix
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 9e-27
 Identities = 38/218 (17%), Positives = 72/218 (33%), Gaps = 34/218 (15%)

Query: 226 SNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAF 285
            N    + V++ ++ TE ++ K L  V   YL   +    + S   I  + GNLE+I +F
Sbjct: 9   INKSYYNVVLQNILETENEYSKELQTVLSTYLRPLQTSEKL-SSANISYLMGNLEEICSF 67

Query: 286 QSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCC 345
           Q   ++ LE         +  +G  FL                    +C++         
Sbjct: 68  QQMLVQSLEECTK-LPEAQQRVGGCFLNLMPQMK--------TLYLTYCANHPS----AV 114

Query: 346 RSLEDKARWLAAFQQERALVEQDREDGLEFAPAA-----------KELARMSAARCHSSR 394
             L + +  L  F + +                            KEL R          
Sbjct: 115 NVLTEHSEELGEFMETKGASSPGILVLTTGLSKPFMRLDKYPTLLKELERHM-------- 166

Query: 395 PPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKL 432
               H D   I +++ A ++++    E ++R E   ++
Sbjct: 167 -EDYHTDRQDIQKSMAAFKNLSAQCQEVRKRKELELQI 203

>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 206

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (259), Expect = 2e-26
 Identities = 46/224 (20%), Positives = 85/224 (37%), Gaps = 40/224 (17%)

Query: 225 LSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILA 284
           LS+     +V+ EL+ TER +VK L+ + E YL   ++     + +++  +FGNL +++ 
Sbjct: 2   LSDADKLRKVICELLETERTYVKDLNCLMERYLKPLQKET-FLTQDELDVLFGNLTEMVE 60

Query: 285 FQSSFLEDLET------------KLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKI 332
           FQ  FL+ LE             K+D        +G +FL +   F  +      H    
Sbjct: 61  FQVEFLKTLEDGVRLVPDLEKLEKVDQFKKVLFSLGGSFLYYADRFKLYSAFCASH---- 116

Query: 333 HCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAA---------KELA 383
               K   +L   ++      +L A             +     P           +EL 
Sbjct: 117 ---TKVPKVLVKAKTDTAFKAFLDAQNPR--QQHSSTLESYLIKPIQRVLKYPLLLRELF 171

Query: 384 RMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRME 427
            ++           +  ++  +  A++ M  VA  INE ++  E
Sbjct: 172 ALT---------DAESEEHYHLDVAIKTMNKVASHINEMQKIHE 206

>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]} Length = 208

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: RhoGEF Vav
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (255), Expect = 9e-26
 Identities = 39/211 (18%), Positives = 81/211 (38%), Gaps = 35/211 (16%)

Query: 225 LSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILA 284
           ++    R   +RE+  TE  +   L  + + ++   +R      P+ ++TIF N+E++ +
Sbjct: 22  MTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR---FLKPQDMETIFVNIEELFS 78

Query: 285 FQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFC 344
             + FL++L+  L    P  + + + F+K+K  F  +           +CS  +      
Sbjct: 79  VHTHFLKELKDALAG--PGATTLYQVFIKYKERFLVY---------GRYCSQVESASKHL 127

Query: 345 CRSLEDKARWLAAFQQERALVEQDREDGLEFAPAA-----------KELARMSAARCHSS 393
            +    +       ++        R    +                +EL + +       
Sbjct: 128 DQVATAREDVQMKLEECSQRANNGRFTLRDLLMVPMQRVLKYHLLLQELVKHT------- 180

Query: 394 RPPTDHPDYVKITEALEAMRDVAMLINERKR 424
               D  +   +  AL+AMRD+A  +NE KR
Sbjct: 181 ---QDATEKENLRLALDAMRDLAQCVNEVKR 208

>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 207

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 3e-25
 Identities = 24/209 (11%), Positives = 60/209 (28%), Gaps = 8/209 (3%)

Query: 228 DQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQS 287
           +Q    +V+  +   R +++ L+ + + +       + +FS   ++ IF  + DI     
Sbjct: 1   EQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSV 60

Query: 288 SFLEDLE--TKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCC 345
             L  +E   ++  +      +G  F                +        +  +     
Sbjct: 61  KLLGHIEDTVEMTDEGSPHPLVGSCFEDLAEELAFDP-----YESYARDILRPGFHDRFL 115

Query: 346 RSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKE-LARMSAARCHSSRPPTDHPDYVK 404
             L      L          E  +        A                    D  D   
Sbjct: 116 SQLSKPGAALYLQSIGEGFKEAVQYVLPRLLLAPVYHCLHYFELLKQLEEKSEDQEDKEC 175

Query: 405 ITEALEAMRDVAMLINERKRRMESLEKLA 433
           + +A+ A+ +V   + +   +  +  +L+
Sbjct: 176 LKQAITALLNVQSGMEKICSKSLAKRRLS 204

>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (197), Expect = 4e-18
 Identities = 33/195 (16%), Positives = 65/195 (33%), Gaps = 25/195 (12%)

Query: 231 RSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPE---QIQTIFGNLEDILAFQS 287
           +  ++ ELI TE+ +V+ L +  + YL E     +   P    +   IFGN+++I  F +
Sbjct: 4   KEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHN 63

Query: 288 SF-LEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCR 346
           +  L++LE            +G  F+     F  +         K         L     
Sbjct: 64  NIFLKELEKYEQLP----EDVGHCFVTWADKFQMY-----VTYCKNKPDSTQLILEHAGS 114

Query: 347 SLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTDHPDYVKIT 406
             ++  +         + + +  +   ++    KEL                  +     
Sbjct: 115 YFDEIQQRHGLANSISSYLIKPVQRITKYQLLLKELLTCC---------EEGKGEI---K 162

Query: 407 EALEAMRDVAMLINE 421
           + LE M  V    N+
Sbjct: 163 DGLEVMLSVPKRAND 177

>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Length = 195

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.3 bits (192), Expect = 2e-17
 Identities = 37/207 (17%), Positives = 68/207 (32%), Gaps = 22/207 (10%)

Query: 226 SNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRN-----DMFSPEQIQTIFGNLE 280
           S   +R  V+ EL++TER +V+ L  V EGY AE                +   +FGN+E
Sbjct: 5   SLAILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNME 64

Query: 281 DILAFQSSFLEDLETKLDWDAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKW 340
           +I  F +            D P    +G  FL+    F  +               +   
Sbjct: 65  EIYHFHNRIFLRELESC-IDCP--ELVGRCFLERMEEFQIYEKYCQNKPRSESLWRQCSD 121

Query: 341 LLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMSAARCHSSRPPTDHP 400
             F     +     L       + + +  +   ++    KE+ + S              
Sbjct: 122 CPFFQECQKKLDHKL----SLDSYLLKPVQRITKYQLLLKEMLKYSK----------HCE 167

Query: 401 DYVKITEALEAMRDVAMLINERKRRME 427
               + EAL ++  +   +N+    + 
Sbjct: 168 GAEDLQEALSSILGILKAVNDSMHLIA 194

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 162

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.6 bits (185), Expect = 8e-17
 Identities = 33/86 (38%), Positives = 58/86 (67%), Gaps = 1/86 (1%)

Query: 428 SLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTI-TLFLFDHQLVYCKR 486
           +++K+A WQ  V  WEG+D+++ SS+LI+ GE+  +      N     FLFDHQ+V CK+
Sbjct: 1   NIDKIAQWQASVLDWEGDDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKK 60

Query: 487 DILKRNTHVYKARLNIDTSQIINLPD 512
           D+++R+   YK R+++D  ++I++ D
Sbjct: 61  DLIRRDILYYKGRIDMDKYEVIDIED 86

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 162

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.9 bits (152), Expect = 2e-12
 Identities = 23/72 (31%), Positives = 42/72 (58%)

Query: 318 FHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAP 377
                 V++++A K+H  + ++  LF  + LE+K RWL AF++ER +V++D + G E + 
Sbjct: 88  RDDDFNVSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQEDEKIGFEISE 147

Query: 378 AAKELARMSAAR 389
             K  A M+  +
Sbjct: 148 NQKRQAAMTVRK 159

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (171), Expect = 1e-15
 Identities = 22/68 (32%), Positives = 32/68 (47%)

Query: 131 SLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAF 190
           S G      ++ +A ++      +EL    GD+I V    +  WW GT    +GWFPS +
Sbjct: 2   SSGSSGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNY 61

Query: 191 VRLRVSQE 198
           VR   S E
Sbjct: 62  VREIKSSE 69

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (119), Expect = 1e-08
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 7  VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
          ++ +A ++      +EL    GD+I V    +  WW GT  
Sbjct: 11 LIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN 51

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 66.3 bits (162), Expect = 9e-15
 Identities = 14/57 (24%), Positives = 33/57 (57%), Gaps = 3/57 (5%)

Query: 137 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           + V+   A++D+      E+  + GD++ +L++ ++DWW     +  G+ P+A+V+ 
Sbjct: 1   ELVL---ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK 54

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.7 bits (119), Expect = 7e-09
 Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 4  DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
          + V+   A++D+      E+  + GD++ +L++ ++DWW     
Sbjct: 1  ELVL---ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN 41

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (161), Expect = 1e-14
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
            +A++D    E  ELGFR GD I V+D  D +WW G     +G FP  +V
Sbjct: 4   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 53

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (119), Expect = 8e-09
 Identities = 17/39 (43%), Positives = 22/39 (56%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
           +A++D    E  ELGFR GD I V+D  D +WW G   
Sbjct: 4  VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH 42

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (162), Expect = 1e-14
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQED 199
           + A+A+    A +   L F   D+I VL+    +WW+G      GWFP ++V++    E 
Sbjct: 11  LKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGSES 69

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 6e-08
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 7  VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
          + A+A+    A +   L F   D+I VL+    +WW+G   
Sbjct: 11 LKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVH 50

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.5 bits (160), Expect = 2e-14
 Identities = 24/53 (45%), Positives = 35/53 (66%)

Query: 139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
           V  A A++D  A+E +ELGFR+G+V+EVLD+ +  WW G      G FP+ +V
Sbjct: 1   VRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYV 53

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (119), Expect = 8e-09
 Identities = 20/42 (47%), Positives = 29/42 (69%)

Query: 6  VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
          V  A A++D  A+E +ELGFR+G+V+EVLD+ +  WW G   
Sbjct: 1  VRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLH 42

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (161), Expect = 2e-14
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVS 196
           F    +A++D+ A   +EL F    +I+ ++  +  WW G   G+   WFPS +V   V+
Sbjct: 5   FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVN 64

Query: 197 QEDTVED 203
            E    D
Sbjct: 65  PEGIHRD 71

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (117), Expect = 2e-08
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 5  FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          F    +A++D+ A   +EL F    +I+ ++  +  WW G 
Sbjct: 5  FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGD 45

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 64.7 bits (158), Expect = 4e-14
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
            +A++D    E+ EL F+ GDVI +++  D +WW G      G FPS +V
Sbjct: 5   VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYV 54

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
           +A++D    E+ EL F+ GDVI +++  D +WW G   
Sbjct: 5  VQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLN 43

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (162), Expect = 4e-14
 Identities = 20/93 (21%), Positives = 41/93 (44%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQEDTVED 203
           A+  + A+E +E+    G+ +EV+  L   WW   + + +G+FPS +++         + 
Sbjct: 19  AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQDVSQAQR 78

Query: 204 CLAALASGGSKTLRRRTSISLLSNDQVRSRVVR 236
            +   A     ++R   SI   S  ++     R
Sbjct: 79  QIKRGAPPRRSSIRNAHSIHQRSRKRLSQDAYR 111

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (110), Expect = 4e-07
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
          A+  + A+E +E+    G+ +EV+  L   WW   + 
Sbjct: 19 AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD 55

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.0 bits (163), Expect = 4e-14
 Identities = 21/95 (22%), Positives = 46/95 (48%), Gaps = 10/95 (10%)

Query: 428 SLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRD 487
           +++K+   Q+ ++GWEG+D+ +  ++ I +G + RV +    +   +FLFD  ++ CK +
Sbjct: 1   AIKKMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTRVGAK---HERHIFLFDGLMICCKSN 57

Query: 488 ILKR-------NTHVYKARLNIDTSQIINLPDGKG 515
             +          +  K +  +   QI +  D   
Sbjct: 58  HGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNE 92

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (157), Expect = 5e-14
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFV 191
            EA++ + A + E+L F+ GD+I VL  ++ +W  G      G FP  FV
Sbjct: 8   VEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFV 57

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (115), Expect = 3e-08
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
           EA++ + A + E+L F+ GD+I VL  ++ +W  G   
Sbjct: 8  VEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESK 46

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (159), Expect = 8e-14
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)

Query: 120 ELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 179
           +LL  S    T        V+   A++D+ A   +EL F  G +I V++  D DWW G  
Sbjct: 18  KLLGPSSERATPAFHPVCQVI---AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEI 74

Query: 180 GEASGWFPSAFVRL 193
              +G FPS +V++
Sbjct: 75  NGVTGLFPSNYVKM 88

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (109), Expect = 4e-07
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 6  VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
          V    A++D+ A   +EL F  G +I V++  D DWW G   
Sbjct: 34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEIN 75

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.8 bits (153), Expect = 2e-13
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
             A++D  A+E  EL F+ G++I VLD  D +WW G     +G FPS FV  
Sbjct: 5   VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT 56

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
            A++D  A+E  EL F+ G++I VLD  D +WW G   
Sbjct: 5  VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENH 43

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (153), Expect = 2e-13
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLD-TLDRDWWWGTRGEASGWFPSAFVRLR 194
           A A +D  A   +EL F+ GD+++VL+   D++W+        G+ P  ++ ++
Sbjct: 3   AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMK 56

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (107), Expect = 3e-07
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW 43
          A A +D  A   +EL F+ GD+++VL+      W+
Sbjct: 3  AIAKYDFKATADDELSFKRGDILKVLNEECDQNWY 37

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (152), Expect = 3e-13
 Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS 196
           A++ + ++E  +L F  G+ I V    D +WW G+ G+ SG FPS +V+ + S
Sbjct: 13  ALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDS 64

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (107), Expect = 3e-07
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
          A++ + ++E  +L F  G+ I V    D +WW G+ G
Sbjct: 13 ALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIG 48

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (152), Expect = 3e-13
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTRGEASGWFPSAF 190
           M++  +    A+WD+     +EL  + GD + ++   D D   WWW    +  G+ P   
Sbjct: 2   MNKGVIY---ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNL 58

Query: 191 VRL 193
           + L
Sbjct: 59  LGL 61

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 1  MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD---WWWGTRG 47
          M++  +    A+WD+     +EL  + GD + ++   D D   WWW    
Sbjct: 2  MNKGVIY---ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLN 48

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.7 bits (150), Expect = 4e-13
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE--ASGWFPSAFVRL 193
           A A +D+ A E  EL F   D I  ++ +D DWW G   +  + G FPS +V L
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL 56

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (117), Expect = 2e-08
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
          A A +D+ A E  EL F   D I  ++ +D DWW G   
Sbjct: 3  ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELE 41

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (151), Expect = 6e-13
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 127 SSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD----RDWWWGTRGEA 182
           SS +S G + +   +  AV+   A    EL   A   +++L+  D     +WW       
Sbjct: 2   SSGSS-GSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGK 60

Query: 183 SGWFPSAFVRLRVS 196
            G+ PS ++R   S
Sbjct: 61  KGYVPSNYIRKTES 74

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 8/43 (18%), Positives = 16/43 (37%)

Query: 2  DEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          + +   +  AV+   A    EL   A   +++L+  D      
Sbjct: 9  EAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTE 51

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (148), Expect = 8e-13
 Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVRLRVSQE 198
           A++D+ +    +L F+ G+ +++++  + DWW         +G+ PS +V    S +
Sbjct: 7   ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDSIQ 63

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 4e-08
 Identities = 8/37 (21%), Positives = 21/37 (56%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
          A++D+ +    +L F+ G+ +++++  + DWW     
Sbjct: 7  ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSL 43

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (148), Expect = 8e-13
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG--TRGEASGWFPSAFVR 192
           A++D+ A+  ++L F  G+  ++L++ + DWW         +G+ PS +V 
Sbjct: 5   ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA 55

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (117), Expect = 1e-08
 Identities = 10/36 (27%), Positives = 22/36 (61%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
          A++D+ A+  ++L F  G+  ++L++ + DWW    
Sbjct: 5  ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARS 40

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (146), Expect = 1e-12
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL 193
           A++D++A +A+E+ F+ GD I  +  +D  W +GT  R   +G  P+ +V  
Sbjct: 8   AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEA 59

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (114), Expect = 3e-08
 Identities = 13/36 (36%), Positives = 24/36 (66%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
          A++D++A +A+E+ F+ GD I  +  +D  W +GT 
Sbjct: 8  AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTV 43

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (145), Expect = 3e-12
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG-TRGEASGWFPSAFV 191
           A++D++ M A +L  R GD   +L+  +  WW    +    G+ PS +V
Sbjct: 13  ALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYV 61

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 5e-08
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          A++D++ M A +L  R GD   +L+  +  WW  
Sbjct: 13 ALYDYMPMNANDLQLRKGDEYFILEESNLPWWRA 46

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.3 bits (144), Expect = 3e-12
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-ASGWFPSAFVR 192
             A++D    + E+L F+ GD++ + D  +  WW     E   G  P  +V 
Sbjct: 4   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVE 55

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.4 bits (113), Expect = 4e-08
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
            A++D    + E+L F+ GD++ + D  +  WW  
Sbjct: 4  VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNA 39

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (144), Expect = 3e-12
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAFVRL 193
           A+A++   A    EL F AG V + +       W  GT    +G  P  +V  
Sbjct: 13  AKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEF 65

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (106), Expect = 5e-07
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
          A+A++   A    EL F AG V + +       W    
Sbjct: 13 AKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGT 50

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.6 bits (142), Expect = 6e-12
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD--WWWGTRGEASGWFPSAFVRL 193
           A A++     E+ +L FR GDVI +L   D    WW G      G FP+ +V L
Sbjct: 4   AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL 57

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW 43
          A A++     E+ +L FR GDVI +L   D    W
Sbjct: 4  AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDW 38

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (142), Expect = 7e-12
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRLR 194
             A ++      ++L F  GDV+ ++       W+  +      G  P+ +V+ R
Sbjct: 9   CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKR 63

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 3e-07
 Identities = 7/38 (18%), Positives = 16/38 (42%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
            A ++      ++L F  GDV+ ++       W+  +
Sbjct: 9  CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAK 46

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.3 bits (141), Expect = 8e-12
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 136 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG-TRGEASGWFPSAFVRLR 194
            + VV   A++D  A EA +L    G    +L+  D  WW    +  + G+ PS +V  +
Sbjct: 2   SEIVV---AMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGK 58

Query: 195 VSQE 198
            S  
Sbjct: 59  KSNN 62

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 3  EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
           + VV   A++D  A EA +L    G    +L+  D  WW  
Sbjct: 2  SEIVV---AMYDFQATEAHDLRLERGQEYIILEKNDLHWWRA 40

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (141), Expect = 8e-12
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 134 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAFVR 192
           + ++ V+   A+  +      +LGF  G+ + +L+     W          G+ P  FV 
Sbjct: 4   LQDNLVI---ALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVA 60

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 1  MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
          + ++ V+   A+  +      +LGF  G+ + +L+    +WW    
Sbjct: 4  LQDNLVI---ALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQS 45

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.5 bits (139), Expect = 1e-11
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAFVRL 193
           A++D VA     L    G+ + VL       W         GW PS ++  
Sbjct: 5   ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITP 55

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.7 bits (106), Expect = 4e-07
 Identities = 9/36 (25%), Positives = 14/36 (38%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
          A++D VA     L    G+ + VL       W   +
Sbjct: 5  ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQ 40

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (140), Expect = 2e-11
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-----RGEASGWFPSAFVRLRV 195
           +A+    +VA  +E+L    G +I +L      WW G      +    GWFP++ V+L  
Sbjct: 9   IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLG 68

Query: 196 SQED 199
              +
Sbjct: 69  PSSE 72

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 9e-07
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 8  LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
          +A+    +VA  +E+L    G +I +L      WW G   
Sbjct: 9  IAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQ 48

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (138), Expect = 2e-11
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW-GTRGEASGWFPSAFVRLRVSQE 198
           ++  A++D+ A+  E+L F+ GD + VL+     W          G+ PS +V    S E
Sbjct: 5   IIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVDSLE 64

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (104), Expect = 8e-07
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 7  VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
          ++  A++D+ A+  E+L F+ GD + VL+    +WW    
Sbjct: 5  IIVVALYDYEAIHHEDLSFQKGDQMVVLEESG-EWWKARS 43

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.5 bits (136), Expect = 3e-11
 Identities = 15/52 (28%), Positives = 26/52 (50%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRL 193
           A++ +D VA  + EL     DV+E+LD   + W        SG+ P+  + +
Sbjct: 4   AKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDI 55

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (98), Expect = 5e-06
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHL 53
          A++ +D VA  + EL     DV+E+LD     WW           
Sbjct: 4  AKSKYDFVARNSSELSVMKDDVLEILDDRR-QWWKVRNASGDSGF 47

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (135), Expect = 4e-11
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 136 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
           E +V    A+  + A+E +E+    G+ +EV+  L   WW   + + +G+FPS +++
Sbjct: 1   EPYV----AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ 53

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 3  EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
          E +V    A+  + A+E +E+    G+ +EV+  L   WW   + 
Sbjct: 1  EPYV----AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD 41

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (138), Expect = 4e-11
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVL--DTLDRDWWWGTRGEASGWFPSAFVRLRVSQED 199
           A++   A   +E+ F +GD+I+V      +  W +G+     GWFP  +V    S E+
Sbjct: 10  ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSSEN 67

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 9e-05
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT 45
          A++   A   +E+ F +GD+I+V +    +  W  
Sbjct: 10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLY 44

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.1 bits (135), Expect = 4e-11
 Identities = 9/55 (16%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEA---SGWFPSAFVRL 193
            + ++ +V  + +E+    GD I ++       W     +    +G  P+ ++R+
Sbjct: 2   NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI 56

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (104), Expect = 7e-07
 Identities = 6/40 (15%), Positives = 16/40 (40%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
           + ++ +V  + +E+    GD I ++       W     +
Sbjct: 2  NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINND 41

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.6 bits (134), Expect = 8e-11
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 142 AEAVWDHVAME-AEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFVRL 193
            + ++ H A      L F  GDV+ +L   ++D W     + +   GWFPS++ +L
Sbjct: 10  VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKL 65

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.1 bits (99), Expect = 5e-06
 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 9  AEAVWDHVAME-AEELGFRAGDVIEVLDTLDRDWWWGTR 46
           + ++ H A      L F  GDV+ +L   ++D W    
Sbjct: 10 VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGE 48

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (133), Expect = 2e-10
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 9/95 (9%)

Query: 125 SESSVTSLGMDEDFVVLAEAVWDHVAMEA------EELGFRAGDVIEVLDTLDRDWWWG- 177
           S SS TS       V L  A + +   +        EL   AG  + V   +D D ++  
Sbjct: 3   SGSSGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEG 62

Query: 178 -TRGEASGWFPSAFVRLRVSQEDTVEDCLAALASG 211
                  G  PS FV   V   ++     +  +SG
Sbjct: 63  ELLDGQRGLVPSNFVD-FVQDNESRLASTSGPSSG 96

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 6/47 (12%)

Query: 6  VVLAEAVWDHVAMEA------EELGFRAGDVIEVLDTLDRDWWWGTR 46
          V L  A + +   +        EL   AG  + V   +D D ++   
Sbjct: 17 VHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGE 63

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.7 bits (129), Expect = 4e-10
 Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 3/52 (5%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG---TRGEASGWFPSAFVR 192
            +          L    GD++E+        WW    T     GWFP   V 
Sbjct: 15  GIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH 66

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 6/33 (18%), Positives = 10/33 (30%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWW 43
           +          L    GD++E+        WW
Sbjct: 15 GIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWW 47

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 4e-10
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGE-ASGWFPSAFVRL 193
           + + ++   ++  EEL F  G+ +EV++  +   +WW         G  P  +V +
Sbjct: 8   VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVV 63

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (98), Expect = 8e-06
 Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 8  LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWG 44
          + + ++   ++  EEL F  G+ +EV++  +   +WW  
Sbjct: 8  VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKC 46

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (128), Expect = 4e-10
 Identities = 14/49 (28%), Positives = 25/49 (51%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR 192
           A+ D+      E+    GDV+EV++  +  WW+       GW P++F+ 
Sbjct: 7   AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLE 55

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (91), Expect = 4e-05
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
          A+ D+      E+    GDV+EV++  +  WW+   
Sbjct: 7  AIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQM 42

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.8 bits (129), Expect = 5e-10
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 15/78 (19%)

Query: 131 SLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD-----WWWGT------- 178
            L +   F+   +A  D+ A + +EL  +AGDV+ V+   + +     W  G        
Sbjct: 4   RLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQ 63

Query: 179 ---RGEASGWFPSAFVRL 193
                +  G FP  F   
Sbjct: 64  HKELEKCRGVFPENFTER 81

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.2 bits (104), Expect = 1e-06
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 1  MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD-----WWWGTR 46
          +   F+   +A  D+ A + +EL  +AGDV+ V+   + +     W  G +
Sbjct: 7  LPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVK 57

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-ASGWFPSAFVR 192
           A++D+   + +EL  R  +   +LD+ +  WW         G+ PS+++ 
Sbjct: 3   ALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 52

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 41.0 bits (96), Expect = 7e-06
 Identities = 9/34 (26%), Positives = 18/34 (52%)

Query: 11 AVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWG 44
          A++D+   + +EL  R  +   +LD+ +  WW  
Sbjct: 3  ALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRV 36

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 135 DEDFVVLAEAVWDHVAMEAE-ELGFRAGDVIEVLD-----TLDRDWWWG-TRGEASGWFP 187
           D   +  A A++D V    E E+  + GD++ +L        D DWW   T+    G+ P
Sbjct: 1   DPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIP 60

Query: 188 SAFVRL 193
             ++ +
Sbjct: 61  YNYIEI 66

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 2  DEDFVVLAEAVWDHVAMEAE-ELGFRAGDVIEVLD-----TLDRDWWWG 44
          D   +  A A++D V    E E+  + GD++ +L        D DWW  
Sbjct: 1  DPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKV 49

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (124), Expect = 4e-09
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 20/98 (20%)

Query: 117 SDDELLSDSESSVTSLGMDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD---RD 173
           +D +L +D E S          + +A A+ D++A +   L    G V+ V   L    R 
Sbjct: 7   ADRKLCADQECSHP--------ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRL 58

Query: 174 WWW--------GTRGEASGWFPSAFVR-LRVSQEDTVE 202
           +W         G      G+FPS+ VR  +  +   V+
Sbjct: 59  FWGGSVQGDYYGDLAARLGYFPSSIVREDQTLKPGKVD 96

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 10/40 (25%), Positives = 16/40 (40%)

Query: 8  LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG 47
          +A A+ D++A +   L    G V+ V   L         G
Sbjct: 23 MAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGG 62

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]} Length = 132

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (120), Expect = 3e-08
 Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 3/81 (3%)

Query: 436 QQRVEGWEGEDLIETSSQLIHQGEV-IRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTH 494
            + ++ WEG+D I+T   +I   +V ++  +          LF   L+       + +  
Sbjct: 11  SEPIQAWEGDD-IKTLGNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSAS-PRMSGF 68

Query: 495 VYKARLNIDTSQIINLPDGKG 515
           +Y+ ++ I    +  L + +G
Sbjct: 69  MYQGKIPIAGMVVNRLDEIEG 89

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.8 bits (113), Expect = 5e-08
 Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS------GWFPSAFVR 192
              + D+ A++  E+    G+V++VL    ++     +  +       GW P + + 
Sbjct: 10  MTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILA 66

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (92), Expect = 4e-05
 Identities = 7/44 (15%), Positives = 19/44 (43%)

Query: 9  AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEH 52
             + D+ A++  E+    G+V++VL    ++     +  +   
Sbjct: 10 MTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHS 53

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 2e-07
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 17/67 (25%)

Query: 144 AVWDHVAMEAEELGFRAGDVIEVLDTL---------------DRDWWWGT--RGEASGWF 186
           A++D+     E++    GD++ V                   +  W  G        G F
Sbjct: 8   ALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDF 67

Query: 187 PSAFVRL 193
           P  +V  
Sbjct: 68  PGTYVEY 74

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 147 DHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV--RLRVSQE 198
           D V +    + F A D + V +  + DWW G   +     G+ PS      +R+  E
Sbjct: 36  DDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHE 92

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 14 DHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR 46
          D V +    + F A D + V +  + DWW G  
Sbjct: 36 DDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRL 68

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 147 DHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV--RLRVSQE 198
           + V + +  + F A D + + +  + DWW G   +     G+ PS      +R+ QE
Sbjct: 38  EDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQE 94

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 6e-04
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 14 DHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE 48
          + V + +  + F A D + + +  + DWW G   +
Sbjct: 38 EDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVK 72

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (102), Expect = 5e-06
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 7/83 (8%)

Query: 440 EGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTIT---LFLFDHQLVYCKR--DILKRNTH 494
           EG++    IE+  +LI Q                   LFLF+  LV+ K   D   R+ +
Sbjct: 1   EGFDE--NIESQGELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKY 58

Query: 495 VYKARLNIDTSQIINLPDGKGRT 517
           +YK++L      +    +G    
Sbjct: 59  LYKSKLFTSELGVTEHVEGDPCK 81

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 5e-06
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD----RDWWWGTRGEASGWFPSAFVRLRVS 196
           L +A  +  A +  ++    GD++ V+   D    ++ W    G   G+  S+F++    
Sbjct: 19  LFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNP 78

Query: 197 QED 199
           +  
Sbjct: 79  RRS 81

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 4e-05
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 11/62 (17%)

Query: 144 AVWDHVAME-----AEELGFRAGDVIEVLDTLDRDWWWGTRGEAS------GWFPSAFVR 192
           A++D+   +     ++ L FR GDV+ V+D  D +WW   R  +       G+ PS    
Sbjct: 6   ALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRV 65

Query: 193 LR 194
            R
Sbjct: 66  ER 67

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 8e-05
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 454 LIHQGEVIRVTSGMWT--NTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLP 511
           L++ G+++   +        +  FL +  L+       +R  + Y A   +D   ++N+ 
Sbjct: 4   LVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVK 63

Query: 512 DGKG 515
           D   
Sbjct: 64  DNPP 67

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 6/49 (12%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 321 HLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDR 369
                ++   K+    +    +F   + + K  WL   ++ +  +   R
Sbjct: 63  KDNPPMKDMFKLLMFPE--SRIFQAENAKIKREWLEVLEETKRALSDKR 109

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 5/76 (6%)

Query: 147 DHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAS---GWFPSAFV--RLRVSQEDTV 201
           +   ++   + F A D + + +    DWW G   +      + PS      +R+ QE   
Sbjct: 38  EECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRLESIRLKQEQKA 97

Query: 202 EDCLAALASGGSKTLR 217
                  +       R
Sbjct: 98  RRSGNPSSLSDIGNRR 113

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	518
d1ki1b1	210	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	100.0
d2dfka1	203	Rho guanine nucleotide exchange factor 9, Collybis	100.0
d1xcga1	228	Rho guanine nucleotide exchange factor 11, PDZ-Rho	100.0
d1txda1	234	Rho guanine nucleotide exchange factor 12 {Human (	100.0
d1f5xa_	208	RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1foea1	206	GEF of TIAM1 (T-Lymphoma invasion and metastasis i	100.0
d1dbha1	207	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	100.0
d1by1a_	209	beta-pix {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ntya1	184	Triple functional domain protein TRIO {Human (Homo	99.97
d1kz7a1	195	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	99.96
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.68
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.66
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.65
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.65
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.64
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.63
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.63
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.62
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.62
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.61
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.6
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.6
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.58
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.57
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.57
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.56
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.56
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.56
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.56
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.55
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.55
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.55
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.55
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.55
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.54
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.54
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.54
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.53
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.53
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.53
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.53
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.53
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	99.53
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.52
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.52
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.52
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.52
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.51
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.51
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.5
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.5
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.49
d1dbha2	133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	99.49
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.49
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.49
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.49
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.48
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.48
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.48
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.48
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.47
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.47
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.47
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.46
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.46
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.46
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.46
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.45
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.45
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.45
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.45
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.45
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.45
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.44
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.43
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.43
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.43
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.43
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.42
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.42
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.42
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.42
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.41
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.41
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.4
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.4
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.4
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.39
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.39
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.38
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.37
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.36
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.36
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.35
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.35
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.34
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.33
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.32
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.32
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.29
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	99.25
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	99.19
d1ntya2	121	Triple functional domain protein TRIO {Human (Homo	99.05
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	99.04
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.97
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	98.97
d1kz7a2	147	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	98.86
d1fhoa_	119	UNC-89 {Nematode (Caenorhabditis elegans) [TaxId:	98.86
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.79
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	98.76
d1txda2	114	Rho guanine nucleotide exchange factor 12 {Human (	98.66
d1xcga2	140	Rho guanine nucleotide exchange factor 11, PDZ-Rho	98.65
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	95.83
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	94.27
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	92.9
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	92.49
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	91.0
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	90.66
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	89.79
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	89.73
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	89.23
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	88.53
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	86.91
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	85.0
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	84.97
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	83.64
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	83.48
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	83.46
d1foea2	162	GEF of TIAM1 (T-Lymphoma invasion and metastasis i	83.29
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	83.01
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	82.97

>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=273.18  Aligned_cols=203  Identities=18%  Similarity=0.247  Sum_probs=182.8

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhC-C-CC
Q psy824          224 LLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLD-W-DA  301 (518)
Q Consensus       224 ~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~-~-~~  301 (518)
                      +++++.||+++|+||++||+.||++|+.+.+.|+.|+. ..+++++.++..||+|+++|+.+|+.|+..|+.+.. + ..
T Consensus         3 l~~~e~kR~~vi~Elv~tE~~Yv~~L~~l~~~y~~~l~-~~~~l~~~~~~~lF~~i~~l~~~h~~~l~~L~~~~~~~~~~   81 (210)
T d1ki1b1           3 LTPTERKRQGYIHELIVTEENYVNDLQLVTEIFQKPLM-ESELLTEKEVAMIFVNWKELIMCNIKLLKALRVRKKMSGEK   81 (210)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HHTSSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHccccc
Confidence            45678999999999999999999999999999999997 467899999999999999999999999999988763 2 23


Q ss_pred             CCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHH---HHhhcchHHHHHHHHHHHhhccccccCccCCCcchh
Q psy824          302 PYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL---FCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPA  378 (518)
Q Consensus       302 ~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~---~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~Pv  378 (518)
                      .....||++|+.+.+.|+.         |..||.+|+.+..   .+.+.++.+..|++.++..+.+.+.. |.+||++|+
T Consensus        82 ~~~~~ig~~f~~~~~~~~~---------Y~~Y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~L~~Pv  151 (210)
T d1ki1b1          82 MPVKMIGDILSAQLPHMQP---------YIRFCSRQLNGAALIQQKTDEAPDFKEFVKRLEMDPRCKGMP-LSSFILKPM  151 (210)
T ss_dssp             SCCCCCHHHHHHHGGGGTH---------HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTSGGGTTCC-HHHHTTHHH
T ss_pred             cchhHHHHHHHHHHHHhhH---------HHHHHHcChHHHHHHHHHHhhcHHHHHHHHHHhhCcccccCC-HHHHHHhHH
Confidence            3457899999999999877         8889999998854   44556788899999988877777665 999999999


Q ss_pred             hHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy824          379 AKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQ  437 (518)
Q Consensus       379 QRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~  437 (518)
                      ||+++|++||++|+|+||++|+|+..|..|++.+++++..+|+.++..|+..+|.++|+
T Consensus       152 qRl~rY~llL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~lQ~  210 (210)
T d1ki1b1         152 QRVTRYPLIIKNILENTPENHPDHSHLKHALEKAEELCSQVNEGVREKENSDRLEWIQA  210 (210)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999874

>d2dfka1 a.87.1.1 (A:37-239) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.1e-35  Score=268.37  Aligned_cols=195  Identities=36%  Similarity=0.575  Sum_probs=176.8

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCC
Q psy824          223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAP  302 (518)
Q Consensus       223 ~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~  302 (518)
                      ++..++.+|+.+|+||++||++||++|+.+.+.|+.|+.+..+++++.+++.||+|+++|+.+|+.|+.+|+++...+++
T Consensus         7 ~~~~~~~~R~~ii~ELi~TE~~Yv~~L~~l~~~y~~~l~~~~~~l~~~~~~~lF~ni~~l~~~h~~~l~~L~~~~~~~~~   86 (203)
T d2dfka1           7 PLQNRDQMRANVINEIMSTERHYIKHLKDICEGYLKQCRKRRDMFSDEQLKVIFGNIEDIYRFQMGFVRDLEKQYNNDDP   86 (203)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCSSCG
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHccCCc
Confidence            35567899999999999999999999999999999999877788999999999999999999999999999999865566


Q ss_pred             CCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHH--hhcchHHHHHHHHHHHhhccccccCccCCCcchhhH
Q psy824          303 YKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFC--CRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAK  380 (518)
Q Consensus       303 ~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~--~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQR  380 (518)
                      ....||++|+++.+.|+.         |..||.+|..+...+  +.+++.+..|+..++..+...+.. |.+||++||||
T Consensus        87 ~~~~ig~~f~~~~~~~~~---------Y~~Y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~L~~PvqR  156 (203)
T d2dfka1          87 HLSEIGPCFLEHQDGFWI---------YSEYCNNHLDACMELSKLMKDSRYQHFFEACRLLQQMIDIA-IDGFLLTPVQK  156 (203)
T ss_dssp             GGCCCHHHHHHTTTGGGH---------HHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTCCSCC-HHHHHTHHHHH
T ss_pred             cHHHHHHHHHHHHHhHHH---------HHHHHHhchhHHHHHHHHHhChHHHHHHHHHHHhhhcccCC-HHHHHHhHHHH
Confidence            678899999999998876         899999999886543  446788899999988877776665 99999999999


Q ss_pred             HHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy824          381 ELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRME  427 (518)
Q Consensus       381 l~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e  427 (518)
                      +++|++||++|+|+||++|+|+..|+.|++.++.++..||+.+++.|
T Consensus       157 i~rY~llL~~llk~t~~~~~d~~~L~~a~~~i~~~~~~iNe~~~~~E  203 (203)
T d2dfka1         157 ICKYPLQLAELLKYTAQDHSDYRYVAAALAVMRNVTQQINERKRRLE  203 (203)
T ss_dssp             HHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999998875

>d1xcga1 a.87.1.1 (A:714-941) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-34  Score=267.75  Aligned_cols=214  Identities=15%  Similarity=0.204  Sum_probs=189.1

Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCC
Q psy824          221 SISLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWD  300 (518)
Q Consensus       221 ~~~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~  300 (518)
                      ..++++++.+|+++|+||+.||++|+++|+.+.+.|..|+. ..+++++.++..||+|+++|+.+|+.|+..|+++...+
T Consensus        12 ~~~~~~~e~kRq~vi~ELi~tE~~Yv~~L~~l~~~y~~~l~-~~~~l~~~~~~~lF~~i~~l~~~h~~fl~~L~~~~~~~   90 (228)
T d1xcga1          12 VAGLTQREIDRQEVINELFVTEASHLRTLRVLDLIFYQRMK-KENLMPREELARLFPNLPELIEIHNSWCEAMKKLREEG   90 (228)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HTTSSCHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcC
Confidence            34567788999999999999999999999999999999997 57899999999999999999999999999999988433


Q ss_pred             CCCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHH---HHhhcchHHHHHHHHHHHhhccccccCccCCCcch
Q psy824          301 APYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL---FCCRSLEDKARWLAAFQQERALVEQDREDGLEFAP  377 (518)
Q Consensus       301 ~~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~---~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~P  377 (518)
                       +..+.+|++|+.+.+...   ...+..+|..||+++..+..   .+.++++.|+.|++.++..+.+.+.. |.+||+.|
T Consensus        91 -~~~~~ig~~~~~~~~~~~---~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~l~~~~~~~~~~~~~-l~~~l~~P  165 (228)
T d1xcga1          91 -PIIKEISDLMLARFDGPA---REELQQVAAQFCSYQSIALELIKTKQRKESRFQLFMQEAESHPQCRRLQ-LRDLIISE  165 (228)
T ss_dssp             -SSCCCCHHHHHHHHSHHH---HHHHHHHHHHHHTTHHHHHHHHHHHHHHCHHHHHHHHHHHTSGGGTTCC-HHHHTTHH
T ss_pred             -CccccHHHHHHHHhhHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHhcCcccccCC-HHHHHhhH
Confidence             346899999998865421   11334569999999998854   44567889999999999887777765 99999999


Q ss_pred             hhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q psy824          378 AAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVE  440 (518)
Q Consensus       378 vQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~  440 (518)
                      +||+++|++||++|+|+||++|+||..|..|++.++.++..+|+.++..++..++.+++++|+
T Consensus       166 ~qRl~rY~llL~~llk~t~~~~~d~~~l~~a~~~~~~~~~~in~~~~~~e~~~~l~~l~~~ld  228 (228)
T d1xcga1         166 MQRLTKYPLLLESIIKHTEGGTSEHEKLCRARDQCREILKYVNEAVKQTENRHRLEGYQKRLD  228 (228)
T ss_dssp             HHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             HHHHhHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999874

>d1txda1 a.87.1.1 (A:766-999) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=100.00  E-value=9.4e-34  Score=264.53  Aligned_cols=213  Identities=19%  Similarity=0.249  Sum_probs=186.8

Q ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCC-CC
Q psy824          223 SLLSNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDW-DA  301 (518)
Q Consensus       223 ~~~~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~-~~  301 (518)
                      ++...+.||+.+|+||+.||+.||++|+.+.+.|..|+. ..+.+++.++..||+|+++|+.+|+.|+..|+....+ ..
T Consensus        15 ~~~~~e~kR~~vi~ELi~tE~~Yv~~L~~l~~~y~~~l~-~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~   93 (234)
T d1txda1          15 GLKPCEIKRQEVINELFYTERAHVRTLKVLDQVFYQRVS-REGILSPSELRKIFSNLEDILQLHIGLNEQMKAVRKRNET   93 (234)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HHTCSCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence            456678999999999999999999999999999999997 5689999999999999999999999999999987643 34


Q ss_pred             CCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHH---HHhhcchHHHHHHHHHHHhhccccccCccCCCcchh
Q psy824          302 PYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL---FCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPA  378 (518)
Q Consensus       302 ~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~---~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~Pv  378 (518)
                      +....||++|..+...+.   ...+..+|..||.+|+.+..   .+.++++.|..|++.++..+.+.+.. |.+||++|+
T Consensus        94 ~~~~~i~~~~~~~~~~~~---~~~~~~~Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~-l~~~L~~Pv  169 (234)
T d1txda1          94 SVIDQIGEDLLTWFSGPG---EEKLKHAAATFCSNQPFALEMIKSRQKKDSRFQTFVQDAESNPLCRRLQ-LKDIIPTQM  169 (234)
T ss_dssp             CCCCCCHHHHHHHHSTHH---HHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHHHSGGGTTCC-HHHHTTHHH
T ss_pred             CccchHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHccccccCCC-HHHHHHHHH
Confidence            445789999998855321   12345579999999998854   34567788999999998877777655 999999999


Q ss_pred             hHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Q psy824          379 AKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAAWQQRVEG  441 (518)
Q Consensus       379 QRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~~~~~i~~  441 (518)
                      ||+++|++||++|+|+|+ +|+|+..|..|++.+++++..||+.+++.++..++.+++++|+.
T Consensus       170 qRl~kY~llL~~llk~t~-~~~d~~~l~~al~~~~~~~~~vn~~~~~~e~~~~l~~l~~~id~  231 (234)
T d1txda1         170 QRLTKYPLLLDNIAKYTE-WPTEREKVKKAADHCRQILNFVNQAVKEAENKQRLEDYQRRLDT  231 (234)
T ss_dssp             HHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
T ss_pred             HHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence            999999999999999997 79999999999999999999999999999999999999999974

>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: RhoGEF Vav
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.3e-34  Score=260.12  Aligned_cols=182  Identities=22%  Similarity=0.301  Sum_probs=164.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q psy824          226 SNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKS  305 (518)
Q Consensus       226 ~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~~  305 (518)
                      +.+.||+.||+||++||++||++|+.+.+.|..||+   .++++.+++.||+||++|+.+|+.|+.+|+++...+.  ..
T Consensus        23 ~~~~kR~~ii~Eli~tE~~Yv~~L~~l~~~y~~pL~---~~l~~~~~~~iF~ni~~i~~~h~~~l~~L~~~~~~~~--~~   97 (208)
T d1f5xa_          23 TEYDKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQ---RFLKPQDMETIFVNIEELFSVHTHFLKELKDALAGPG--AT   97 (208)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHHHTTTTTTTHHHHT---TTSCHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHSSC--GG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCch--hh
Confidence            456799999999999999999999999999999996   4789999999999999999999999999999885443  47


Q ss_pred             chHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHH---HHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHH
Q psy824          306 CIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLL---FCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKEL  382 (518)
Q Consensus       306 ~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~---~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~  382 (518)
                      .||++|+++.+.|+.         |..||.+|..+..   .+.+.++.|..|++.++..+.+.+.. |.+||++|+||++
T Consensus        98 ~ig~~f~~~~~~~~~---------Y~~Y~~~~~~~~~~l~~~~~~~~~f~~~l~~~~~~~~~~~~~-l~~~L~~PvqRl~  167 (208)
T d1f5xa_          98 TLYQVFIKYKERFLV---------YGRYCSQVESASKHLDQVATAREDVQMKLEECSQRANNGRFT-LRDLLMVPMQRVL  167 (208)
T ss_dssp             GHHHHHHSTHHHHTH---------HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTTCTTSST-TTTTTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHH---------HHHHHHcchhHHHHHHHHHHhCHHHHHHHHHHHhcccccCCC-HHHHHHHHHHHHH
Confidence            899999999998876         8899999998854   44667888999999988877776655 9999999999999


Q ss_pred             HHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy824          383 ARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERK  423 (518)
Q Consensus       383 ~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~  423 (518)
                      ||+|||++|+|+|| +|+|+..|..|++.++.++..||+.+
T Consensus       168 rY~lLl~~llk~T~-~~~d~~~L~~a~~~~~~~~~~iNe~k  207 (208)
T d1f5xa_         168 KYHLLLQELVKHTQ-DATEKENLRLALDAMRDLAQCVNEVK  207 (208)
T ss_dssp             HHHHHHHHHHTTCC-CSSHHHHHHHHHHHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHHhCC-CcccHHHHHHHHHHHHHHHHHhhhhc
Confidence            99999999999998 69999999999999999999999864

>d1foea1 a.87.1.1 (A:1034-1239) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-32  Score=252.25  Aligned_cols=189  Identities=22%  Similarity=0.312  Sum_probs=164.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCC----
Q psy824          227 NDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAP----  302 (518)
Q Consensus       227 ~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~----  302 (518)
                      ..+||++||+||++||++||++|+.+.+.|..|+. ..+.++..++..||+|+++|+.+|+.|+..|+.+......    
T Consensus         4 ~~~kr~~ii~Eli~tE~~Yv~~L~~l~~~y~~~l~-~~~~l~~~~~~~lF~ni~~l~~~h~~fl~~L~~~~~~~~~~~~~   82 (206)
T d1foea1           4 DADKLRKVICELLETERTYVKDLNCLMERYLKPLQ-KETFLTQDELDVLFGNLTEMVEFQVEFLKTLEDGVRLVPDLEKL   82 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-TSSSSCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTSSCGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence            46789999999999999999999999999999997 6789999999999999999999999999999998742211    


Q ss_pred             --------CCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHH--hhcchHHHHHHHHHHHhhccccccCccC
Q psy824          303 --------YKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFC--CRSLEDKARWLAAFQQERALVEQDREDG  372 (518)
Q Consensus       303 --------~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~--~~~~~~~~~fl~~~~~~~~~~~~~~l~~  372 (518)
                              ....+|++|+++.+.|+.         |..||.+|+.+...+  .++++.|..|++.+... ... ..+|.+
T Consensus        83 ~~~~~~~~~~~~ig~~f~~~~~~~~~---------Y~~Y~~~~~~~~~~~~~~~~~~~f~~f~~~~~~~-~~~-~~~l~~  151 (206)
T d1foea1          83 EKVDQFKKVLFSLGGSFLYYADRFKL---------YSAFCASHTKVPKVLVKAKTDTAFKAFLDAQNPR-QQH-SSTLES  151 (206)
T ss_dssp             CSGGGGHHHHHHHHHHHHHHTTGGGG---------HHHHHHHTTTHHHHHTTTTTCHHHHHHHHHHCTT-CCG-GGSHHH
T ss_pred             HHhccccchHhHHHHHHHHHHHHHHH---------HHHHHhCCchHHHHHHHHhcChHHHHHHHHHhHh-ccC-CCCHHH
Confidence                    112599999999999987         899999999886644  44677888888765432 223 335999


Q ss_pred             CCcchhhHHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy824          373 LEFAPAAKELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRME  427 (518)
Q Consensus       373 ~L~~PvQRl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e  427 (518)
                      ||++||||++||+|||++|+++||++|+|+..|..|++.+++++..||+.+|..|
T Consensus       152 ~L~~PvqRi~rY~llL~~l~k~t~~~~~d~~~L~~a~~~i~~~~~~iNe~~r~~E  206 (206)
T d1foea1         152 YLIKPIQRVLKYPLLLRELFALTDAESEEHYHLDVAIKTMNKVASHINEMQKIHE  206 (206)
T ss_dssp             HTTHHHHHHTTHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999988765

>d1dbha1 a.87.1.1 (A:198-404) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-33  Score=256.67  Aligned_cols=198  Identities=14%  Similarity=0.154  Sum_probs=168.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhC-C-CCCCCC
Q psy824          228 DQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLD-W-DAPYKS  305 (518)
Q Consensus       228 ~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~-~-~~~~~~  305 (518)
                      |++|++||+||++||+.||++|+.+.+.|..||....++++..++..||+|+++|+.+|+.|+..|+.+.. + ......
T Consensus         1 e~~~~~vi~Eli~tE~~Yv~~L~~l~~~y~~pl~~~~~~~~~~~v~~iF~ni~~I~~~h~~fl~~Le~~~~~~~~~~~~~   80 (207)
T d1dbha1           1 EQTYYDLVKAFMAEIRQYIRELNLIIKVFREPFVSNSKLFSANDVENIFSRIVDIHELSVKLLGHIEDTVEMTDEGSPHP   80 (207)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHCTTTCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCCTTSSSC
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccccCCccc
Confidence            35799999999999999999999999999999986678899999999999999999999999999997652 1 223467


Q ss_pred             chHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHH-----HHHHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhH
Q psy824          306 CIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKW-----LLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAK  380 (518)
Q Consensus       306 ~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a-----~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQR  380 (518)
                      .||++|+++.+.+..       .+|..||.|+.++     +..+..++..+..|++.++..+.+.+.. |.+||++||||
T Consensus        81 ~ig~~f~~~~~~~~f-------~~Y~~Y~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-L~s~Li~PvQR  152 (207)
T d1dbha1          81 LVGSCFEDLAEELAF-------DPYESYARDILRPGFHDRFLSQLSKPGAALYLQSIGEGFKEAVQYV-LPRLLLAPVYH  152 (207)
T ss_dssp             CCHHHHHHHHHTTTT-------HHHHHHHHHHTSTTHHHHHHHHHHSTTHHHHHHHHCTTHHHHHHHT-HHHHTTHHHHH
T ss_pred             hHHHHHHHHhHHhcc-------cHHHHHHHhHhhhHHHHHHHHHHhCCHHHHHHHHHHHcChhcccCC-hHHHHHHHHHH
Confidence            899999999876542       2388999987653     3345667777888888777766666655 99999999999


Q ss_pred             HHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy824          381 ELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMESLEKLAA  434 (518)
Q Consensus       381 l~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~~~~l~~  434 (518)
                      ++||+|||+.|.+ |+++|+|+..|+.|++.+++++..+|+.++..++.+++.+
T Consensus       153 l~rY~LLl~~L~~-~t~~~~D~~~L~~A~~~i~~~~~~in~~~~~~~~~~rl~e  205 (207)
T d1dbha1         153 CLHYFELLKQLEE-KSEDQEDKECLKQAITALLNVQSGMEKICSKSLAKRRLSE  205 (207)
T ss_dssp             HHHHHHHHHHHHH-HCSCHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             HhHHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            9999999998865 5568999999999999999999999999999999988875

>d1by1a_ a.87.1.1 (A:) beta-pix {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: beta-pix
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-34  Score=260.68  Aligned_cols=190  Identities=17%  Similarity=0.218  Sum_probs=166.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCCCCCc
Q psy824          227 NDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDMFSPEQIQTIFGNLEDILAFQSSFLEDLETKLDWDAPYKSC  306 (518)
Q Consensus       227 ~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~l~~~~~~~lF~ni~~i~~~h~~~l~~L~~~~~~~~~~~~~  306 (518)
                      +.++|+.||+||++||++||++|+.+.+.|+.||. ..+.+++.++..||+|+++|+.+|+.|+..|+.+...+. ..+.
T Consensus        10 ~~~~r~~Ii~ELi~TE~~Yv~~L~~l~~~y~~pl~-~~~~l~~~~~~~lF~ni~~l~~~h~~~l~~L~~~~~~~~-~~~~   87 (209)
T d1by1a_          10 NKSYYNVVLQNILETENEYSKELQTVLSTYLRPLQ-TSEKLSSANISYLMGNLEEICSFQQMLVQSLEECTKLPE-AQQR   87 (209)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTSSSSSSGGGTTHHHHHHHHHHHHHHHHHHHHHHHTTC-SSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHhCCc-cHhH
Confidence            34689999999999999999999999999999997 567889999999999999999999999999999884322 3578


Q ss_pred             hHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHHHHHH
Q psy824          307 IGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELARMS  386 (518)
Q Consensus       307 ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~~y~L  386 (518)
                      ||++|+++.+.|..        +|..||.+|+.+...+.+....+..|++.++.  ...+..+|.+||++||||++||+|
T Consensus        88 ig~~fl~~~~~~~~--------~Y~~Y~~~~~~~~~~l~k~~~~~~~f~~~~~~--~~~~~~~l~~~L~~PvQRl~rY~L  157 (209)
T d1by1a_          88 VGGCFLNLMPQMKT--------LYLTYCANHPSAVNVLTEHSEELGEFMETKGA--SSPGILVLTTGLSKPFMRLDKYPT  157 (209)
T ss_dssp             HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHTTTHHHHTTTTCC--CSSTTTHHHHHTTSTTTGGGTHHH
T ss_pred             HHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHHHhhHHHHHHHHHHhh--cccccCCHHHHhhhHHHHHHHHHH
Confidence            99999999887642        49999999999998888888888888765432  222333599999999999999999


Q ss_pred             hhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy824          387 AARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRMES  428 (518)
Q Consensus       387 lL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~e~  428 (518)
                      ||++|+|+||.+|+|+..|..|++.+++++..+|+.+++.|.
T Consensus       158 LL~~Llk~t~~~~~d~~~L~~a~~~~~~i~~~iNe~~~~~e~  199 (209)
T d1by1a_         158 LLKELERHMEDYHTDRQDIQKSMAAFKNLSAQCQEVRKRKEL  199 (209)
T ss_dssp             HHHHHHHSSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998877663

>d1ntya1 a.87.1.1 (A:1231-1414) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-30  Score=232.27  Aligned_cols=175  Identities=20%  Similarity=0.288  Sum_probs=146.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCHHHHHHHhcCHHHHHHHHHH-HHHHHHHhhCCCCCCC
Q psy824          229 QVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRNDM---FSPEQIQTIFGNLEDILAFQSS-FLEDLETKLDWDAPYK  304 (518)
Q Consensus       229 ~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~~~---l~~~~~~~lF~ni~~i~~~h~~-~l~~L~~~~~~~~~~~  304 (518)
                      +||+.+|+||++||++||++|+.+.+.|+.|+......   ....+...||+|+++|+.+|+. |++.|+....    ..
T Consensus         2 ~KR~~ii~El~~TE~~Yv~~L~~l~~~y~~pl~~~~~~~~~~~~~~~~~iF~ni~~i~~~h~~~ll~~l~~~~~----~~   77 (184)
T d1ntya1           2 RRKEFIMAELIQTEKAYVRDLRECMDTYLWEMTSGVEEIPPGIVNKELIIFGNMQEIYEFHNNIFLKELEKYEQ----LP   77 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCTTTTTCHHHHHTTHHHHHHHHHHTHHHHHHHTTT----CG
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhHHHHHHhhHHHHHHHHHHHHHHHHHHhhc----Cc
Confidence            68999999999999999999999999999999753322   2345667899999999999998 6788877543    23


Q ss_pred             CchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcchhhHHHHH
Q psy824          305 SCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAAKELAR  384 (518)
Q Consensus       305 ~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQRl~~y  384 (518)
                      ..||++|+++.+.|+.         |..||.+|+.+...+.+..   ..|++.++....+.  .+|.+||++||||++||
T Consensus        78 ~~ig~~fl~~~~~~~~---------Y~~Y~~~~~~a~~~l~~~~---~~~~~~~~~~~~~~--~~l~~~Li~PvQRl~rY  143 (184)
T d1ntya1          78 EDVGHCFVTWADKFQM---------YVTYCKNKPDSTQLILEHA---GSYFDEIQQRHGLA--NSISSYLIKPVQRITKY  143 (184)
T ss_dssp             GGTHHHHHHTTTTTHH---------HHHHHHHHHHHHHHHHHHT---TTHHHHHHHHHTCS--SCHHHHHTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH---------HHHHHhCHHHHHHHHHHHH---hHHHHHHHHhhccc--cCHHHHHHhHHHHHHHH
Confidence            6799999999998866         9999999999977665433   34666666544432  34999999999999999


Q ss_pred             HHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy824          385 MSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKR  424 (518)
Q Consensus       385 ~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~  424 (518)
                      +|||++|+|+||++|+|   +++|++.+++++..+|+.+.
T Consensus       144 ~lLL~~llk~T~~~~~d---l~~al~~i~~v~~~ine~~~  180 (184)
T d1ntya1         144 QLLLKELLTCCEEGKGE---IKDGLEVMLSVPKRANDAMH  180 (184)
T ss_dssp             HHHHHHHHHTSCTTCTT---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHH---HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988   57899999999999999774

>d1kz7a1 a.87.1.1 (A:624-818) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DBL homology domain (DH-domain)
superfamily: DBL homology domain (DH-domain)
family: DBL homology domain (DH-domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.9e-30  Score=232.35  Aligned_cols=183  Identities=22%  Similarity=0.310  Sum_probs=148.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCC---CHHHHHHHhcCHHHHHHHHHH-HHHHHHHhhCC
Q psy824          226 SNDQVRSRVVRELINTERDFVKVLHDVSEGYLAECRRRN--DMF---SPEQIQTIFGNLEDILAFQSS-FLEDLETKLDW  299 (518)
Q Consensus       226 ~~~~kR~~ii~ELl~tE~~Yv~~L~~l~~~f~~~l~~~~--~~l---~~~~~~~lF~ni~~i~~~h~~-~l~~L~~~~~~  299 (518)
                      +...+|++||+||++||++||++|+.+.+.|+.||+...  +.+   ...++..||+|+++|+.+|+. |++.++.+.+ 
T Consensus         5 ~~~~~R~~ii~Eli~TE~~Yv~~L~~l~~~y~~~l~~~~~~~~~~~~~~~~~~~iF~ni~~i~~~h~~~ll~~l~~~~~-   83 (195)
T d1kz7a1           5 SLAILRRHVMNELLDTERAYVEELLCVLEGYAAEMDNPLMAHLISTGLQNKKNILFGNMEEIYHFHNRIFLRELESCID-   83 (195)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGCTTTTTTSCHHHHHTHHHHHTTHHHHHHHHHHTHHHHHHTTTT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc-
Confidence            356899999999999999999999999999999997421  222   256899999999999999988 6787777643 


Q ss_pred             CCCCCCchHHHHHhhhcCcCCchhHHHHHHHHHhcchhhHHHHHHhhcchHHHHHHHHHHHhhccccccCccCCCcchhh
Q psy824          300 DAPYKSCIGETFLKHKSGFHPHLGVTVRHAIKIHCSDKDKWLLFCCRSLEDKARWLAAFQQERALVEQDREDGLEFAPAA  379 (518)
Q Consensus       300 ~~~~~~~ig~~f~~~~~~~~~~~~~~~~~~y~~y~~~~~~a~~~~~~~~~~~~~fl~~~~~~~~~~~~~~l~~~L~~PvQ  379 (518)
                         ....||++|+++.+.|..         |..||++|+.+...+.+..  ...|+..+.... ..+ .+|.+||++|||
T Consensus        84 ---~~~~ig~~f~~~~~~~~~---------Y~~Y~~~~~~~~~~l~~~~--~~~~~~~~~~~~-~~~-~~l~s~L~~Pvq  147 (195)
T d1kz7a1          84 ---CPELVGRCFLERMEEFQI---------YEKYCQNKPRSESLWRQCS--DCPFFQECQKKL-DHK-LSLDSYLLKPVQ  147 (195)
T ss_dssp             ---CGGGHHHHHHTTTTGGGH---------HHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHH-TCS-SCHHHHHTHHHH
T ss_pred             ---chHHHHHHHHHHHHHhHH---------HHHHHhCHHHHHHHHHHHH--hChHHHHHHHhc-cCC-CCHHHHHHHHHH
Confidence               236799999999999876         8999999998865442211  112444444322 233 349999999999


Q ss_pred             HHHHHHHhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhH
Q psy824          380 KELARMSAARCHSSRPPTDHPDYVKITEALEAMRDVAMLINERKRRM  426 (518)
Q Consensus       380 Rl~~y~LlL~~l~k~t~~~~~d~~~l~~a~~~~~~~~~~vn~~~~~~  426 (518)
                      |++||+|||++|+|+|| +|+|+..|++|++.+++++..+|+.++..
T Consensus       148 Rl~rY~LlL~~llk~Tp-~~~d~~~L~~al~~~~~~~~~iNe~~~~~  193 (195)
T d1kz7a1         148 RITKYQLLLKEMLKYSK-HCEGAEDLQEALSSILGILKAVNDSMHLI  193 (195)
T ss_dssp             HHHHHHHHHHHHHHTCT-TSTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999997 69999999999999999999999987653

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.2e-17  Score=130.83  Aligned_cols=59  Identities=34%  Similarity=0.696  Sum_probs=55.6

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|||||+++.++||+|++||+|.|+++.++|||.|+.+|+.||||++||+.+...
T Consensus        34 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~nyVe~~~~~   92 (98)
T d1udla_          34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTTDS   92 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECCCC
T ss_pred             ccEEEEccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEEECCeEEEEchHHEEECCCC
Confidence            45799999999999999999999999999999999999999999999999999998764

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=7.1e-17  Score=111.80  Aligned_cols=55  Identities=42%  Similarity=0.810  Sum_probs=53.0

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      .+|+|+|||.++.++||+|++||.|.|++..++|||.|+.+|+.|+||++||+++
T Consensus         2 ~yarAlydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yve~i   56 (57)
T d1utia_           2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAPM   56 (57)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEEHHHEEEc
Confidence            4799999999999999999999999999999999999999999999999999986

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=9.6e-17  Score=111.15  Aligned_cols=55  Identities=36%  Similarity=0.689  Sum_probs=52.2

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      +.+|+|+|||+|+.++||+|++||+|.|+++.++|||.|+.+|+.|+||++|++.
T Consensus         1 v~yarAlydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yve~   55 (57)
T d1utia_           1 VRWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP   55 (57)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             CEEEEECcCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEEHHHEEE
Confidence            4689999999999999999999999999999999999999999999999998874

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.4e-16  Score=109.97  Aligned_cols=55  Identities=38%  Similarity=0.741  Sum_probs=52.5

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      .+++|+|||.++.++||+|++||+|.|+++.++|||.|+.+|+.|+||++||+++
T Consensus         2 tyv~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           2 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEEHhHEEEC
Confidence            4789999999999999999999999999999999999999999999999999875

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.64  E-value=2e-16  Score=109.89  Aligned_cols=55  Identities=35%  Similarity=0.683  Sum_probs=52.9

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      .+|+|+|||.++.++||+|++||+|.|++..++|||.|+.+|+.|+||++||+++
T Consensus         3 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yvep~   57 (58)
T d1sema_           3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCeEEEEEhhhEEEC
Confidence            4799999999999999999999999999999999999999999999999999976

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.63  E-value=2.9e-16  Score=107.92  Aligned_cols=54  Identities=26%  Similarity=0.641  Sum_probs=51.8

Q ss_pred             EEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      .++|+|||.|+.++||+|++||.|.|+++.++|||.|+.+|+.|+||++||+.+
T Consensus         2 ~~vAl~dy~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~i   55 (55)
T d1u06a1           2 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCccCCCCCEEEEeEEcCCCEEEEEECCeEEEEeHHHEEEC
Confidence            578999999999999999999999999999999999999999999999999875

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=3.2e-16  Score=108.90  Aligned_cols=55  Identities=29%  Similarity=0.567  Sum_probs=52.0

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      ...|+|+|||.|+.++||+|++||+|.|+++.++|||.|+.+|+.|+||++||+.
T Consensus         2 ~rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~~   56 (58)
T d1uj0a_           2 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVTT   56 (58)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEES
T ss_pred             CCEEEECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEEECCeEEEEehHhEee
Confidence            4679999999999999999999999999999999999999999999999999874

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.5e-16  Score=107.94  Aligned_cols=54  Identities=31%  Similarity=0.591  Sum_probs=51.2

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      .+|+|||||.|+.++||+|++||+|.|+++.++|||.|+.+|+.|+||++||+.
T Consensus         2 tyv~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~   55 (56)
T d1gcqa_           2 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP   55 (56)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEEECcCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEECCeEEEEEHhHEEE
Confidence            479999999999999999999999999999999999999999999999998874

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.62  E-value=3.6e-16  Score=108.61  Aligned_cols=54  Identities=26%  Similarity=0.517  Sum_probs=51.5

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeee
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIIN   59 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~   59 (518)
                      ..+|+|||||.|+.++||+|.+||+|.|+++.++|||.|+++|+.|+||++||+
T Consensus         2 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yve   55 (58)
T d1sema_           2 TKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVC   55 (58)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTEEEEEEGGGEE
T ss_pred             CEEEEECCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCeEEEEEhhhEE
Confidence            358999999999999999999999999999999999999999999999999887

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.3e-16  Score=110.56  Aligned_cols=57  Identities=25%  Similarity=0.446  Sum_probs=53.4

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      .+..++|||||.|+.++||+|++||+|.|++..++|||.|+++|+.|+||++||+..
T Consensus         4 ~g~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~yVe~~   60 (62)
T d1k4us_           4 KGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDS   60 (62)
T ss_dssp             CCEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCS
T ss_pred             CCCEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHeEEC
Confidence            456799999999999999999999999999999999999999999999999998854

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=6e-16  Score=107.47  Aligned_cols=53  Identities=42%  Similarity=0.807  Sum_probs=51.3

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEE
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR  192 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~  192 (518)
                      ..++|+|||.++.++||+|++||+|.|++..++|||.|+.+|+.|+||++||+
T Consensus         3 rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yV~   55 (58)
T d1uj0a_           3 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFVT   55 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEE
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEEECCeEEEEehHhEe
Confidence            57999999999999999999999999999999999999999999999999997

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.60  E-value=8.4e-16  Score=105.58  Aligned_cols=53  Identities=19%  Similarity=0.483  Sum_probs=50.5

Q ss_pred             EEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      .++|+|||.|+.++||+|++||+|.|+++.++|||.|+++|+.|+||++|++.
T Consensus         2 ~~vAl~dy~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~   54 (55)
T d1u06a1           2 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKK   54 (55)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEECCCCCCCCcCCccCCCCCEEEEeEEcCCCEEEEEECCeEEEEeHHHEEE
Confidence            58999999999999999999999999999999999999999999999998873

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=7.9e-16  Score=104.61  Aligned_cols=51  Identities=27%  Similarity=0.640  Sum_probs=49.2

Q ss_pred             EEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEE
Q psy824          142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVR  192 (518)
Q Consensus       142 ~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~  192 (518)
                      .+|+|+|+|+.++||+|.+||+|.|+++.++|||.|+.+|+.||||++||+
T Consensus         3 yval~~y~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~~~g~~G~~P~~yve   53 (53)
T d1wlpb1           3 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEECSCBCCCSSSBCCBCTTCEEEEEECCTTSSEEEESSSCEEEECSTTEE
T ss_pred             EEEeeeECCCCCCEecCCCCCEEEEEeecCCceEEEEECCcEeEecHHhCC
Confidence            579999999999999999999999999999999999999999999999996

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.9e-16  Score=110.15  Aligned_cols=56  Identities=32%  Similarity=0.554  Sum_probs=53.0

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      ...++|+|+|.|+.++||+|++||+|.|++..++|||.|+.+|+.|+||++||+..
T Consensus         5 g~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~g~~G~~P~~yVe~~   60 (62)
T d1k4us_           5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVEDS   60 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECSSCEEEECGGGCCCS
T ss_pred             CCEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHeEEC
Confidence            45789999999999999999999999999999999999999999999999999864

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9.7e-16  Score=104.16  Aligned_cols=52  Identities=19%  Similarity=0.395  Sum_probs=48.9

Q ss_pred             EEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeee
Q psy824            8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIIN   59 (518)
Q Consensus         8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~   59 (518)
                      .++|+|+|+|+.++||+|++||+|.|+++.++|||.|+.+|+.|+||++|++
T Consensus         2 ~yval~~y~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~~~g~~G~~P~~yve   53 (53)
T d1wlpb1           2 PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEEECSCBCCCSSSBCCBCTTCEEEEEECCTTSSEEEESSSCEEEECSTTEE
T ss_pred             eEEEeeeECCCCCCEecCCCCCEEEEEeecCCceEEEEECCcEeEecHHhCC
Confidence            3589999999999999999999999999999999999999999999988874

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.6e-15  Score=112.03  Aligned_cols=58  Identities=33%  Similarity=0.638  Sum_probs=54.7

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.++.++||+|++||+|.|+++.++|||.|+.+|+.||||++||+++..
T Consensus        10 ~~~~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~i~~   67 (76)
T d1ujya_          10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKS   67 (76)
T ss_dssp             CEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEECCH
T ss_pred             CEEEEECccCCCCCCCCccCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHEEECCC
Confidence            4689999999999999999999999999999999999999999999999999998754

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=1.4e-15  Score=105.92  Aligned_cols=54  Identities=39%  Similarity=0.655  Sum_probs=51.2

Q ss_pred             EEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE--CCeeEEEcCCCEEEc
Q psy824          141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRLR  194 (518)
Q Consensus       141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~  194 (518)
                      +|+|+|||.++.++||+|++||+|.|++..++|||.|+.  +|+.|+||++||+++
T Consensus         2 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~i   57 (58)
T d1jo8a_           2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEEccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEEc
Confidence            689999999999999999999999999999999999994  689999999999986

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=2.9e-15  Score=104.06  Aligned_cols=54  Identities=39%  Similarity=0.738  Sum_probs=50.4

Q ss_pred             EEEEeecCCCCCCCCCCCCCCCEEEEEecCC--CCeEEEEECCeeEEEcCCCEEEc
Q psy824          141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~--~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      .|+|+|+|.|+.++||+|++||+|.|+++.+  +|||.|+.+|+.|+||++||+.|
T Consensus         3 ~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~~g~~G~vP~~yve~i   58 (58)
T d1oota_           3 KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   58 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEEECCcEEEEcHHHEEEC
Confidence            6899999999999999999999999998864  58999999999999999999975

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.6e-15  Score=110.02  Aligned_cols=58  Identities=29%  Similarity=0.713  Sum_probs=53.6

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|||.++.++||+|++||+|.|+++ +++||+++.+|+.||||.+||+.+...
T Consensus        10 ~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~-~~~ww~g~~~g~~G~fP~~yve~i~~~   67 (74)
T d1j3ta_          10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECCCS
T ss_pred             CeEEEEccCCCCCCCCEecCCCCCEEEEEEc-cCCeEEEEECCcEEEEchhhEEECCCC
Confidence            3689999999999999999999999999988 569999999999999999999998654

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.6e-16  Score=107.57  Aligned_cols=55  Identities=25%  Similarity=0.606  Sum_probs=52.6

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      ..++|+|||.|+.++||+|++||+|.|+++.++|||.|+.+|+.|+||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~~g~~G~~P~~yve~l   57 (58)
T d1ng2a1           3 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPL   57 (58)
T ss_dssp             EEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCS
T ss_pred             eEEEECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEEECCCCcEEcHhHEEEC
Confidence            4789999999999999999999999999999999999999999999999999875

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=2e-15  Score=104.54  Aligned_cols=54  Identities=24%  Similarity=0.593  Sum_probs=51.0

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEE
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRL  193 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~  193 (518)
                      .+++|+|||.++.++||+|++||+|.|++..++|||.|+ .+|+.|+||++||++
T Consensus         2 ~~v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             CEEEECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEE
Confidence            378999999999999999999999999999999999999 678999999999985

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.8e-15  Score=110.27  Aligned_cols=59  Identities=19%  Similarity=0.241  Sum_probs=53.1

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCC-----eeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGE-----AFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~-----~~g~~p~~~v~~~~   62 (518)
                      ..+.+|+|+|||+++.++||+|++||+|.|+++.++|||.|++++     ..|+||++||+...
T Consensus         5 ~~g~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~   68 (80)
T d1ue9a_           5 SSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLG   68 (80)
T ss_dssp             SCCEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECC
T ss_pred             CCCCEEEECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEECC
Confidence            457899999999999999999999999999999999999998754     36999999998654

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=2.9e-15  Score=107.44  Aligned_cols=59  Identities=25%  Similarity=0.483  Sum_probs=52.3

Q ss_pred             CccCceEEEEecCCCCCCCC-CcccCCCCEEEEEEecC-----CCeeEEEe-CCeeEEEEeeeeec
Q psy824            2 DEDFVVLAEAVWDHVAMEAE-ELGFRAGDVIEVLDTLD-----RDWWWGTR-GEAFEHLSQIIINH   60 (518)
Q Consensus         2 d~~~~~~~~al~d~~~~~~~-eL~~~~gd~i~v~~~~~-----~~Ww~g~~-~~~~g~~p~~~v~~   60 (518)
                      |+....+|+|||||.|++++ ||+|++||+|.|+++.|     +|||.|+. +|+.|+||++||+.
T Consensus         1 dP~~~~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~   66 (67)
T d2v1ra1           1 DPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI   66 (67)
T ss_dssp             CGGGCEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEE
T ss_pred             CCCcCEEEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEE
Confidence            67788999999999998865 99999999999999865     48999986 67889999999873

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=3.3e-15  Score=103.35  Aligned_cols=54  Identities=19%  Similarity=0.454  Sum_probs=49.7

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe-CCeeEEEEeeeeec
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEAFEHLSQIIINH   60 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~-~~~~g~~p~~~v~~   60 (518)
                      .+++|+|||.++.++||+|++||+|.|+++.+++||.|+. +|+.|+||++||++
T Consensus         2 ~~v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             CEEEECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEE
Confidence            4799999999999999999999999999999999999986 46889999999873

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.2e-15  Score=103.85  Aligned_cols=53  Identities=26%  Similarity=0.466  Sum_probs=45.2

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEec-CCCeeEEEeCCeeEEEEeeeee
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTL-DRDWWWGTRGEAFEHLSQIIIN   59 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~-~~~Ww~g~~~~~~g~~p~~~v~   59 (518)
                      +.|+|+|||.|+.++||+|++||+|.|+++. +++||.|+++|+.|+||++||+
T Consensus         1 ~~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~~g~~G~vP~nyve   54 (56)
T d1gria1           1 MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIE   54 (56)
T ss_dssp             CEEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEE
T ss_pred             CEEEEeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEEECCcEEEEehhhEE
Confidence            4799999999999999999999999998765 4788889999999999999986

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.1e-15  Score=108.40  Aligned_cols=57  Identities=21%  Similarity=0.394  Sum_probs=52.2

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ....|+|||||.++.++||+|++||+|.|+++ +++||+|+++|+.|+||.+||+...
T Consensus         9 ~~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~-~~~ww~g~~~g~~G~fP~~yve~i~   65 (74)
T d1j3ta_           9 ENLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVHGGRGWFPKSYVKIIP   65 (74)
T ss_dssp             CCCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEESTTCCCEEEGGGEEECC
T ss_pred             CCeEEEEccCCCCCCCCEecCCCCCEEEEEEc-cCCeEEEEECCcEEEEchhhEEECC
Confidence            35789999999999999999999999999988 5699999999999999999999653

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.54  E-value=2.7e-15  Score=102.12  Aligned_cols=52  Identities=23%  Similarity=0.512  Sum_probs=49.0

Q ss_pred             EEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEE
Q psy824          142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRL  193 (518)
Q Consensus       142 ~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~  193 (518)
                      ++|+|||.|+.++||+|++||++.|+++.++|||.++ .+|+.|+||++||+.
T Consensus         1 V~Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           1 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   53 (53)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEECTTSCEEEECGGGEEE
T ss_pred             CEEeeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEEeCCCCEEEEeHHHEeC
Confidence            5799999999999999999999999999999999999 789999999999973

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.7e-15  Score=103.38  Aligned_cols=53  Identities=28%  Similarity=0.643  Sum_probs=45.2

Q ss_pred             EEEEeecCCCCCCCCCCCCCCCEEEEEecC-CCCeEEEEECCeeEEEcCCCEEE
Q psy824          141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTL-DRDWWWGTRGEASGWFPSAFVRL  193 (518)
Q Consensus       141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~-~~~w~~~~~~g~~G~~P~~~v~~  193 (518)
                      .|+|+|||.|+.++||+|++||+|.|+++. +++||.|+.+|+.||||+|||+.
T Consensus         2 ~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~~g~~G~vP~nyvev   55 (56)
T d1gria1           2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEM   55 (56)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESSSCEEEEEGGGEEC
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEEECCcEEEEehhhEEE
Confidence            689999999999999999999999988764 57888899999999999999974

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.8e-15  Score=105.28  Aligned_cols=55  Identities=18%  Similarity=0.399  Sum_probs=51.5

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeec
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      ...++|+|||.|+.++||+|++||+|.|+++.+++||.|+.+|+.|+||++|++.
T Consensus         2 l~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~~g~~G~~P~~yve~   56 (58)
T d1ng2a1           2 LQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEP   56 (58)
T ss_dssp             CEEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCC
T ss_pred             ceEEEECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEEECCCCcEEcHhHEEE
Confidence            4578999999999999999999999999999999999999999999999988863

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=4.7e-15  Score=103.28  Aligned_cols=53  Identities=28%  Similarity=0.420  Sum_probs=49.2

Q ss_pred             EEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC--CeeEEEEeeeeec
Q psy824            8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EAFEHLSQIIINH   60 (518)
Q Consensus         8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~--~~~g~~p~~~v~~   60 (518)
                      +|+|+|||.|+.++||+|++||+|.|+++.++|||.|++.  |+.|+||++||+.
T Consensus         2 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~~P~~yVe~   56 (58)
T d1jo8a_           2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYVSL   56 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             EEEEccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEchHHEEE
Confidence            6999999999999999999999999999999999999974  5789999999874

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.3e-15  Score=117.62  Aligned_cols=57  Identities=26%  Similarity=0.483  Sum_probs=53.5

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ...|+|||||+++.++||+|++||+|.|+++.++|||+|+++|+.|+||.+||+...
T Consensus        34 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~nyVe~~~   90 (98)
T d1udla_          34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYVKMTT   90 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTSEEECC
T ss_pred             ccEEEEccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEEECCeEEEEchHHEEECC
Confidence            567999999999999999999999999999999999999999999999999998654

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.7e-14  Score=108.09  Aligned_cols=59  Identities=29%  Similarity=0.561  Sum_probs=53.8

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEEC-----CeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG-----EASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~-----g~~G~~P~~~v~~~~~~  197 (518)
                      ..+++|+|+|.++.++||+|++||+|.|+++.++|||.|+.+     |+.||||++||+++...
T Consensus         7 g~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~~~   70 (80)
T d1ue9a_           7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPS   70 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSC
T ss_pred             CCEEEECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEECCCC
Confidence            468999999999999999999999999999999999999864     45899999999988754

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=6.2e-15  Score=105.87  Aligned_cols=57  Identities=28%  Similarity=0.557  Sum_probs=53.2

Q ss_pred             EEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEcccC
Q psy824          141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~~  197 (518)
                      .++|+|||.|..++||+|++||+|.|+++.+++||.++ .+|+.||||++||+.+...
T Consensus         4 ~v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yV~~~~~~   61 (67)
T d1gl5a_           4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKKSN   61 (67)
T ss_dssp             CEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESSTTT
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEECCCCEEEEEhHHeEEecCC
Confidence            68999999999999999999999999999999999998 7889999999999987654

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.53  E-value=3.1e-15  Score=101.80  Aligned_cols=52  Identities=17%  Similarity=0.317  Sum_probs=47.4

Q ss_pred             EEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE-eCCeeEEEEeeeeec
Q psy824            9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEAFEHLSQIIINH   60 (518)
Q Consensus         9 ~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~-~~~~~g~~p~~~v~~   60 (518)
                      ++|||||.|+.++||+|++||+|.|+++.+++||.|+ .+|+.|+||++||++
T Consensus         1 V~Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           1 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLVE   53 (53)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEECTTSCEEEECGGGEEE
T ss_pred             CEEeeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEEeCCCCEEEEeHHHEeC
Confidence            5899999999999999999999999999999999998 456789999988863

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=2.2e-14  Score=123.82  Aligned_cols=88  Identities=38%  Similarity=0.822  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHhcccCCCccccccccceEeeeeEEEEecCc-ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCee
Q psy824          428 SLEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGM-WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQ  506 (518)
Q Consensus       428 ~~~~l~~~~~~i~~~~~~~l~~~~r~ll~~g~l~~~~~~~-~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~  506 (518)
                      |+.+|.++|.+|.||++.+|..++|+||++|.|.+++... ..+.||+|||||+||+|+++..++..|.|++.|+|+++.
T Consensus         1 ~~~ki~~~Q~si~~~eg~~L~~~~r~Li~eG~L~~~~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~y~~k~~i~L~~~~   80 (162)
T d2dfka2           1 NIDKIAQWQASVLDWEGDDILDRSSELIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYE   80 (162)
T ss_dssp             THHHHHHHHHHSBTCCSSCGGGTCCCEEEEEEEEEESSTTCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEE
T ss_pred             CHHHHHHHHHhcCCCCCCcccccCceEEEEEEEEEEEcCCCCceeEEEEEeCCeEEEEEecCCCCCceEEccccchhhce
Confidence            4678999999999999999999999999999999986543 467899999999999999887777899999999999999


Q ss_pred             EEEcCCCCC
Q psy824          507 IINLPDGKG  515 (518)
Q Consensus       507 v~~~~d~~~  515 (518)
                      |.+++|++.
T Consensus        81 v~~~~~~~~   89 (162)
T d2dfka2          81 VIDIEDGRD   89 (162)
T ss_dssp             EEECCSEEC
T ss_pred             eeecccccc
Confidence            999988654

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.4e-15  Score=105.60  Aligned_cols=55  Identities=29%  Similarity=0.622  Sum_probs=51.4

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE--CCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~  194 (518)
                      ..++|+|||.|+.++||+|++||+|.|+++.++|||.|+.  +|+.|+||++||+++
T Consensus         4 ~~~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           4 KIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CCEECCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEEC
T ss_pred             cEEEECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEEC
Confidence            4689999999999999999999999999999999999994  799999999999975

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=6.5e-15  Score=105.57  Aligned_cols=57  Identities=26%  Similarity=0.638  Sum_probs=50.2

Q ss_pred             ceeEEEEeecCCCCCCC-CCCCCCCCEEEEEecCC-----CCeEEEE-ECCeeEEEcCCCEEEc
Q psy824          138 FVVLAEAVWDHVAMEAE-ELGFRAGDVIEVLDTLD-----RDWWWGT-RGEASGWFPSAFVRLR  194 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~-eL~~~~g~~i~v~~~~~-----~~w~~~~-~~g~~G~~P~~~v~~~  194 (518)
                      ...+|+|+|||.|+..+ ||+|++||+|.|+++.+     +|||.|+ .+|+.|+||++||+.|
T Consensus         4 ~~~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           4 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   67 (67)
T ss_dssp             GCEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             cCEEEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEEC
Confidence            34689999999998865 99999999999998754     5899999 5899999999999975

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=1.1e-14  Score=101.14  Aligned_cols=54  Identities=30%  Similarity=0.497  Sum_probs=49.5

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecC--CCeeEEEeCCeeEEEEeeeeec
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~--~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      ..|+|+|||.|++++||+|++||+|.|+++.+  .+||.|+.+|+.|+||++||+.
T Consensus         2 P~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~~g~~G~vP~~yve~   57 (58)
T d1oota_           2 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEE
T ss_pred             CeEEEccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEEECCcEEEEcHHHEEE
Confidence            36999999999999999999999999999875  5799999999999999999873

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=6.7e-15  Score=102.69  Aligned_cols=56  Identities=30%  Similarity=0.572  Sum_probs=51.1

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEccc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~  196 (518)
                      .+|+|+|||.|+.++||+|++||+|.|++.. ++||.++ .+|+.|+||++||+++.+
T Consensus         2 ~~a~alydf~a~~~~ELs~~~Gd~i~v~~~~-~~ww~~~~~~g~~G~~P~nyve~i~~   58 (59)
T d1i07a_           2 KYAKSKYDFVARNSSELSVMKDDVLEILDDR-RQWWKVRNASGDSGFVPNNILDIMRT   58 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGGG-CCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEEccCCCCCCCCeeeEcCCCEEEEEEEc-CCcEEEEEcCCCEEEECHHHeEECCC
Confidence            3789999999999999999999999999875 5899998 789999999999998864

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=1.2e-14  Score=100.43  Aligned_cols=54  Identities=26%  Similarity=0.508  Sum_probs=49.1

Q ss_pred             EEEEeecCCCCCCCCCCCCCCCEEEEEecCCC-CeEEEEECCeeEEEcCCCEEEc
Q psy824          141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDR-DWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~-~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      .++|+|||.|+.++||+|++||+|.|+++.++ +||.++.+|+.||||++||+++
T Consensus         2 ~~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~~~g~~G~~P~~yv~~v   56 (57)
T d1opka1           2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPV   56 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEES
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEEECCCEeEEchhheEEC
Confidence            57899999999999999999999999987665 5778889999999999999986

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9e-15  Score=103.31  Aligned_cols=54  Identities=26%  Similarity=0.733  Sum_probs=49.5

Q ss_pred             EEEEeecCCCCCCCCCCCCCCCEEEEEecCC---CCeEEEEECCeeEEEcCCCEEEc
Q psy824          141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD---RDWWWGTRGEASGWFPSAFVRLR  194 (518)
Q Consensus       141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~---~~w~~~~~~g~~G~~P~~~v~~~  194 (518)
                      .++|+|||.|+.++||+|++||+|.|++..+   +|||.|+.+|+.|+||++||+.+
T Consensus         6 ~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~~g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           6 VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLY   62 (63)
T ss_dssp             EEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECC
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEECCeEEEEchHHhEeC
Confidence            5789999999999999999999999997754   47999999999999999999865

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.3e-14  Score=100.83  Aligned_cols=54  Identities=28%  Similarity=0.645  Sum_probs=50.0

Q ss_pred             EEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE--ECCeeEEEcCCCEEEc
Q psy824          141 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLR  194 (518)
Q Consensus       141 ~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~  194 (518)
                      .++|+|||.|+.++||+|++||.|.|+++.+++||.++  .+|+.|+||++||+++
T Consensus         2 l~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           2 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeEEC
Confidence            45799999999999999999999999999999999998  4799999999999874

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.6e-14  Score=115.95  Aligned_cols=58  Identities=24%  Similarity=0.489  Sum_probs=54.5

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      +..++|+|||.+..++||+|++||+|.|+++.++|||.|+.+|+.||||++||+.+..
T Consensus        14 g~~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~   71 (118)
T d1ng2a2          14 GEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ   71 (118)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTS
T ss_pred             CcEEEECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEEECCeEEEEehhhEEECCC
Confidence            3578899999999999999999999999999999999999999999999999998764

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.2e-14  Score=102.72  Aligned_cols=53  Identities=21%  Similarity=0.590  Sum_probs=48.3

Q ss_pred             EEEEecCCCCCCCCCcccCCCCEEEEEEecC---CCeeEEEeCCeeEEEEeeeeec
Q psy824            8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLD---RDWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~---~~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      .++|+|||.|+.++||+|++||+|.|+++.+   +|||.|+.+|+.|+||++||+.
T Consensus         6 ~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~~g~~G~~P~~yv~~   61 (63)
T d1ycsb2           6 VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL   61 (63)
T ss_dssp             EEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEEC
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEECCeEEEEchHHhEe
Confidence            5789999999999999999999999998764   3799999999999999999873

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.2e-14  Score=104.21  Aligned_cols=59  Identities=20%  Similarity=0.528  Sum_probs=53.0

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCC--CCeEEEE-ECCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGT-RGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~--~~w~~~~-~~g~~G~~P~~~v~~~~~~  197 (518)
                      ...|+|+|||.++.++||+|++||+|.|+++.+  +|||.++ .+|+.|+||++||+++...
T Consensus         6 l~~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~~G~~G~vP~~yv~~~~~~   67 (71)
T d1u5sa1           6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG   67 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCS
T ss_pred             cEEEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEECCCCEEEEChHHEEECCCC
Confidence            458999999999999999999999999998754  5899998 6899999999999998653

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=8.5e-15  Score=106.69  Aligned_cols=58  Identities=26%  Similarity=0.424  Sum_probs=52.6

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCC-CCeEEEEECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~-~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ...|+|+|||.++.++||+|++||+|.|++..+ ++||.++.+|+.|+||.+||+++..
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yve~i~~   68 (72)
T d1ugva_          10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSG   68 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             CEEEEEcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEEeCCCEEEEchHHEEECCC
Confidence            457999999999999999999999999998765 5799999999999999999998864

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=2e-14  Score=99.32  Aligned_cols=53  Identities=21%  Similarity=0.291  Sum_probs=47.7

Q ss_pred             EEEEecCCCCCCCCCcccCCCCEEEEEEecCC-CeeEEEeCCeeEEEEeeeeec
Q psy824            8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDR-DWWWGTRGEAFEHLSQIIINH   60 (518)
Q Consensus         8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~-~Ww~g~~~~~~g~~p~~~v~~   60 (518)
                      .++|||||.|+.++||+|++||+|.|+++.++ +||.|+.+|+.|+||++|++.
T Consensus         2 ~~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~~~g~~G~~P~~yv~~   55 (57)
T d1opka1           2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITP   55 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECSSCEEEEEGGGEEE
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEEECCCEeEEchhheEE
Confidence            47999999999999999999999999988765 577899999999999988873

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.7e-14  Score=116.94  Aligned_cols=85  Identities=25%  Similarity=0.483  Sum_probs=74.0

Q ss_pred             HHHHHHHHHhcccCCCccccccccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccC-------CCCceEEEEEee
Q psy824          429 LEKLAAWQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDIL-------KRNTHVYKARLN  501 (518)
Q Consensus       429 ~~~l~~~~~~i~~~~~~~l~~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~-------~~~~~~~k~~i~  501 (518)
                      .+++.++|++|.||++.+|..++|.||++|.+.+.+.   .++|++|||||+||+||++..       .+..|.|++.|+
T Consensus         2 i~kl~~iq~~i~g~~g~~l~~~gr~li~eG~l~~~~~---~k~r~~fLF~d~Li~~k~~~~~~~~~~~~~~~y~~k~~i~   78 (133)
T d1dbha2           2 IKKMNEIQKNIDGWEGKDIGQCCNEFIMEGTLTRVGA---KHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFF   78 (133)
T ss_dssp             THHHHHHHTTEESCCSSCGGGTCCCEEEEEEEEETTC---SSCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEE
T ss_pred             hHHHHHHHHHccCCCCCCccccCcEEEEEeEEEEecC---CCeEEEEEecCeEEEEEecccccccccCCCccEEEEeeee
Confidence            3678999999999999999999999999999988654   358999999999999997642       236799999999


Q ss_pred             cCCeeEEEcCCCCCC
Q psy824          502 IDTSQIINLPDGKGR  516 (518)
Q Consensus       502 l~~~~v~~~~d~~~~  516 (518)
                      |+++.|.+++|++..
T Consensus        79 l~~~~v~~~~~~~~~   93 (133)
T d1dbha2          79 MRKVQINDKDDTNEY   93 (133)
T ss_dssp             SCSCEEEECCCSSSC
T ss_pred             cccccccccCCCccc
Confidence            999999999988753

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.9e-15  Score=103.98  Aligned_cols=56  Identities=25%  Similarity=0.440  Sum_probs=51.0

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe--CCeeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEAFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~~~~g~~p~~~v~~   60 (518)
                      ++..++|+|||.|+.++||+|++||+|.|+++.+++||.|++  .|..|+||++||+.
T Consensus         2 ~G~~~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~g~~G~vP~nyve~   59 (60)
T d1arka_           2 AGKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYVEA   59 (60)
T ss_dssp             CCCCEECCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECTTTCCEEEEETTTCEE
T ss_pred             CCcEEEECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCCCCEEEEcHHHEEE
Confidence            467799999999999999999999999999999999999987  46789999998873

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.6e-14  Score=106.14  Aligned_cols=57  Identities=25%  Similarity=0.503  Sum_probs=52.2

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecC----CCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTL----DRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~----~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ..++|+|||.|+.++||+|++||+|.|+++.    ++|||.|+.+|+.||||++||+++..
T Consensus        14 ~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~g~~G~vP~~yv~~~~~   74 (79)
T d1uhca_          14 QVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTES   74 (79)
T ss_dssp             CCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEECCCEEEEehhhEEECCC
Confidence            4689999999999999999999999999864    37999999999999999999998864

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=7.7e-15  Score=108.25  Aligned_cols=56  Identities=20%  Similarity=0.364  Sum_probs=52.3

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ...++|+|||.++.++||+|++||+|.|+++.+++||.|+++|+.|+||.+||+..
T Consensus        10 ~~~~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~i   65 (76)
T d1ujya_          10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREI   65 (76)
T ss_dssp             CEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEETTEEEEECTTTSEEC
T ss_pred             CEEEEECccCCCCCCCCccCCCCCEEEEeEEcCCCEEEEEECCcEEEEchHHEEEC
Confidence            46799999999999999999999999999999999999999999999999998843

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.2e-15  Score=106.76  Aligned_cols=58  Identities=26%  Similarity=0.548  Sum_probs=53.3

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|+|.|+.++||+|++||+|.|++..+++||.++ .+|+.|+||++||+.+.+
T Consensus         8 ~~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yv~~~~~   66 (67)
T d1awwa_           8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCSCC
T ss_pred             CEEEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEECcC
Confidence            3578999999999999999999999999999899999998 689999999999987753

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.3e-14  Score=104.27  Aligned_cols=57  Identities=33%  Similarity=0.594  Sum_probs=52.3

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||+++.++||+|++||+|.|++. +++||.++.+|+.||||++||+++..
T Consensus         8 ~~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~-~~~Ww~~~~~g~~G~vP~~yv~~~~~   64 (69)
T d1uhfa_           8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKDS   64 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECCC
T ss_pred             CcEEEECccCCCCCcCCcCCCCCCEEEEEEe-cCCEEEEEECCcEEEEchhhEEECCC
Confidence            3678999999999999999999999999987 56899999999999999999998754

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.9e-14  Score=102.44  Aligned_cols=57  Identities=23%  Similarity=0.565  Sum_probs=52.0

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE--CCeeEEEcCCCEEEccc
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEASGWFPSAFVRLRVS  196 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~--~g~~G~~P~~~v~~~~~  196 (518)
                      ...+|+|||.++.++||+|++||+|.|++..++|||.++.  +|+.|+||++||+++..
T Consensus         3 ~~~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~~s   61 (64)
T d1fmka1           3 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS   61 (64)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEETTS
T ss_pred             eEEEECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEECcc
Confidence            4678999999999999999999999999998899999984  68999999999998753

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=2.9e-14  Score=104.72  Aligned_cols=58  Identities=19%  Similarity=0.306  Sum_probs=53.0

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE------CCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR------GEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~------~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.+..++||+|++||+|.|++..++|||.++.      +|+.||||++||+++..
T Consensus         7 g~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~~   70 (74)
T d1wfwa_           7 GSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPFSG   70 (74)
T ss_dssp             SCEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBCCS
T ss_pred             CCEEEEeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEECCC
Confidence            35889999999999999999999999999999999999983      47899999999998864

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.6e-14  Score=102.57  Aligned_cols=60  Identities=12%  Similarity=0.193  Sum_probs=51.8

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEEeC-CeeEEEEeeeeeccCC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRG-EAFEHLSQIIINHSIS   63 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~-~~~g~~p~~~v~~~~~   63 (518)
                      ..+..|+|+|||.|+.++||+|++||+|.|+++.+ ++||.|+.+ |+.|+||.+||+....
T Consensus         4 p~g~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~~g~~G~~P~~yve~~~~   65 (71)
T d1k9aa1           4 PSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG   65 (71)
T ss_dssp             CTTCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCC
T ss_pred             CCCCEEEEccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEeCCCCEEEEchHHeEEccc
Confidence            35678999999999999999999999999998864 578888876 6789999999986543

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=2.5e-14  Score=104.18  Aligned_cols=58  Identities=29%  Similarity=0.609  Sum_probs=49.7

Q ss_pred             eeEEEEeecCCCC-CCCCCCCCCCCEEEEEecC-CCCeEEEEE--CCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAM-EAEELGFRAGDVIEVLDTL-DRDWWWGTR--GEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~-~~~eL~~~~g~~i~v~~~~-~~~w~~~~~--~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.|. +++||+|++||+|.|+... ++|||.|+.  +|+.||||++||+.+..
T Consensus         7 ~~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i~~   68 (72)
T d1spka_           7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             SCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             CCEEEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEECCC
Confidence            3578999999985 5789999999999998654 478999985  48999999999999864

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.2e-14  Score=114.67  Aligned_cols=56  Identities=20%  Similarity=0.353  Sum_probs=52.8

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      +..++|||||.|+.++||+|++||+|.|+++.++|||.|+.+|+.|+||.+||+..
T Consensus        14 g~~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~~yv~~~   69 (118)
T d1ng2a2          14 GEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKS   69 (118)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEET
T ss_pred             CcEEEECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEEECCeEEEEehhhEEEC
Confidence            57889999999999999999999999999999999999999999999999999854

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.8e-14  Score=103.61  Aligned_cols=56  Identities=21%  Similarity=0.356  Sum_probs=51.1

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCeeEEEEeeeeeccC
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ...++|+|||.++.++||+|++||+|.|+++ +++||.|+++|+.|+||++||+...
T Consensus         8 ~~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~-~~~Ww~~~~~g~~G~vP~~yv~~~~   63 (69)
T d1uhfa_           8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIGDRSGIFPSNYVKPKD   63 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECSTTCCEEECGGGCEECC
T ss_pred             CcEEEECccCCCCCcCCcCCCCCCEEEEEEe-cCCEEEEEECCcEEEEchhhEEECC
Confidence            4789999999999999999999999999987 4589999999999999999998653

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5.4e-14  Score=107.60  Aligned_cols=60  Identities=20%  Similarity=0.353  Sum_probs=54.2

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCC----CCeEEEEECCeeEEEcCCCEEEcccCC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD----RDWWWGTRGEASGWFPSAFVRLRVSQE  198 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~----~~w~~~~~~g~~G~~P~~~v~~~~~~~  198 (518)
                      ...++|+|+|.++.++||+|++||+|.|+++.+    +|||.++.+|+.||||++||+++....
T Consensus        17 ~~~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~g~~G~~P~~yv~~~~~~~   80 (92)
T d1ug1a_          17 EKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRR   80 (92)
T ss_dssp             GGEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCCS
T ss_pred             CeEEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEecccEEEEEhhhceecCCcc
Confidence            357899999999999999999999999999864    689999999999999999999986543

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=4.4e-14  Score=101.33  Aligned_cols=55  Identities=20%  Similarity=0.342  Sum_probs=49.9

Q ss_pred             EEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe-CCeeEEEEeeeeeccC
Q psy824            8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEAFEHLSQIIINHSI   62 (518)
Q Consensus         8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~-~~~~g~~p~~~v~~~~   62 (518)
                      +++|+|||.|+.++||+|++||+|.|+++.+++||.|+. +|+.|+||++||+...
T Consensus         4 ~v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yV~~~~   59 (67)
T d1gl5a_           4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK   59 (67)
T ss_dssp             CEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECSSSCEEEEETTSEESST
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEECCCCEEEEEhHHeEEec
Confidence            589999999999999999999999999999999999974 5688999999998643

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=3.8e-14  Score=103.15  Aligned_cols=61  Identities=18%  Similarity=0.268  Sum_probs=50.9

Q ss_pred             ccCceEEEEecCCCCC-CCCCcccCCCCEEEEEEecC-CCeeEEEeC--CeeEEEEeeeeeccCC
Q psy824            3 EDFVVLAEAVWDHVAM-EAEELGFRAGDVIEVLDTLD-RDWWWGTRG--EAFEHLSQIIINHSIS   63 (518)
Q Consensus         3 ~~~~~~~~al~d~~~~-~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~--~~~g~~p~~~v~~~~~   63 (518)
                      .+...+|+|||||+|. .++||+|++||+|.|+.+.+ ++||.|+++  |+.|+||++||+....
T Consensus         4 ~~~~~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g~~G~fP~nyVe~i~~   68 (72)
T d1spka_           4 GSSGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             SSCSCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             CCCCCEEEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCCCEEEEchhhEEECCC
Confidence            3567889999999986 57889999999999996654 689999875  6789999999997543

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.7e-14  Score=97.14  Aligned_cols=52  Identities=21%  Similarity=0.486  Sum_probs=47.7

Q ss_pred             EEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe--CCeeEEEEeeeee
Q psy824            8 LAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEAFEHLSQIIIN   59 (518)
Q Consensus         8 ~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~~~~g~~p~~~v~   59 (518)
                      .++|+|||.|+.++||+|++||+|.|+++.+++||.++.  +|+.|+||++||+
T Consensus         2 l~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~   55 (57)
T d1efna_           2 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVA   55 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTTTEEEEEEGGGEE
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCCCCEEEEeHHHeE
Confidence            367999999999999999999999999998899999985  5788999998886

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.2e-14  Score=104.45  Aligned_cols=57  Identities=19%  Similarity=0.300  Sum_probs=51.3

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecC----CCeeEEEeCCeeEEEEeeeeeccC
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD----RDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~----~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ..+++|||||.|+.++||+|++||+|.|+++.+    .+||.|+.+|+.|+||++||+...
T Consensus        13 ~~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~g~~G~vP~~yv~~~~   73 (79)
T d1uhca_          13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTE   73 (79)
T ss_dssp             SCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECC
T ss_pred             CEEEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEECCCEEEEehhhEEECC
Confidence            456899999999999999999999999998753    689999999999999999998653

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.4e-14  Score=104.24  Aligned_cols=59  Identities=20%  Similarity=0.243  Sum_probs=52.2

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecC-CCeeEEEeCCeeEEEEeeeeeccCC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-RDWWWGTRGEAFEHLSQIIINHSIS   63 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-~~Ww~g~~~~~~g~~p~~~v~~~~~   63 (518)
                      ....|+|||||.++.++||+|++||+|.|+++.+ ++||.|+.+|+.|+||.+||+....
T Consensus         9 p~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~g~~G~~P~~yve~i~~   68 (72)
T d1ugva_           9 PFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSG   68 (72)
T ss_dssp             SCCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             CCEEEEEcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEEeCCCEEEEchHHEEECCC
Confidence            3567999999999999999999999999998765 5799999999999999999986543

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.1e-14  Score=100.16  Aligned_cols=57  Identities=30%  Similarity=0.613  Sum_probs=50.5

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE--ECCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~~~~  196 (518)
                      ...++|+|||.++.++||+|++||+|.|++. +++||++.  .+|+.|+||++||+++..
T Consensus         4 ~~~vvAlydy~~~~~~eLs~~~Gd~i~v~~~-~~~ww~~~~~~~g~~G~vP~~yv~~~~~   62 (65)
T d1qcfa1           4 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARVDS   62 (65)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             cEEEEECCcCCCCCcCccCCCCCCEEEEEEE-CCCCEEEEEccCCCEEEEchHHeEECcc
Confidence            3578999999999999999999999999986 56788887  478999999999998754

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.1e-15  Score=107.12  Aligned_cols=59  Identities=20%  Similarity=0.436  Sum_probs=52.4

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeCCee-EEEEeeeeeccCC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRGEAF-EHLSQIIINHSIS   63 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~~~~-g~~p~~~v~~~~~   63 (518)
                      ...+|+|||||.|+.++||+|.+||+|.|+++.++|||.|+++++. |+||++||+....
T Consensus         5 ~~~~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~fP~~yv~~~~~   64 (71)
T d2hspa_           5 FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVN   64 (71)
T ss_dssp             SSSCEECCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBCSSCCSCCEETTTCCSCSC
T ss_pred             CcEEEEEcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEECCeEEEEEchHHeEEcCC
Confidence            4567999999999999999999999999999999999999987766 6999999986543

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6e-14  Score=101.98  Aligned_cols=58  Identities=21%  Similarity=0.409  Sum_probs=51.1

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecC-CCCeEEEEE-CCeeEEEcCCCEEEccc
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL-DRDWWWGTR-GEASGWFPSAFVRLRVS  196 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~-~~~w~~~~~-~g~~G~~P~~~v~~~~~  196 (518)
                      ...|+|+|||.++.++||+|++||+|.|+++. +++||.++. .|+.|+||.+||+.+..
T Consensus         6 g~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~~g~~G~~P~~yve~~~~   65 (71)
T d1k9aa1           6 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG   65 (71)
T ss_dssp             TCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECTTCCEEEEEGGGEEECCC
T ss_pred             CCEEEEccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEeCCCCEEEEchHHeEEccc
Confidence            35799999999999999999999999999875 567888885 58999999999998754

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.8e-14  Score=101.59  Aligned_cols=58  Identities=16%  Similarity=0.398  Sum_probs=50.8

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecC--CCeeEEE-eCCeeEEEEeeeeeccC
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGT-RGEAFEHLSQIIINHSI   62 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~--~~Ww~g~-~~~~~g~~p~~~v~~~~   62 (518)
                      .+..|+|||||.|+.++||+|++||+|.|+++.+  +|||.|+ .+|+.|+||++||+...
T Consensus         5 ~l~~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~~G~~G~vP~~yv~~~~   65 (71)
T d1u5sa1           5 VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLS   65 (71)
T ss_dssp             SSSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECC
T ss_pred             ccEEEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEECCCCEEEEChHHEEECC
Confidence            3567999999999999999999999999998754  4899997 56788999999998654

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.3e-14  Score=104.12  Aligned_cols=61  Identities=20%  Similarity=0.366  Sum_probs=54.0

Q ss_pred             CCccCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe-CCeeEEEEeeeeecc
Q psy824            1 MDEDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEAFEHLSQIIINHS   61 (518)
Q Consensus         1 ~d~~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~-~~~~g~~p~~~v~~~   61 (518)
                      |+......++|+|||+|+.++||+|++||+|.|+++.+++||.|+. +|+.|+||++||+..
T Consensus         3 ~s~~~~~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~vP~~yv~~~   64 (67)
T d1awwa_           3 MSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEA   64 (67)
T ss_dssp             SSCSCCCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCTTSCBCCEETTTBCCS
T ss_pred             cCCCCCEEEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEECCCCEEEEcHHHeEEC
Confidence            3456678899999999999999999999999999998899999975 578899999998754

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.4e-13  Score=105.32  Aligned_cols=56  Identities=16%  Similarity=0.245  Sum_probs=51.2

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecC----CCeeEEEeCCeeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD----RDWWWGTRGEAFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~----~~Ww~g~~~~~~g~~p~~~v~~~   61 (518)
                      ...++|+|||.|+.++||+|++||+|.|+++.|    .+||.++.+|+.|+||++||+..
T Consensus        17 ~~~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~g~~G~~P~~yv~~~   76 (92)
T d1ug1a_          17 EKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPY   76 (92)
T ss_dssp             GGEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEEC
T ss_pred             CeEEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEecccEEEEEhhhceec
Confidence            456899999999999999999999999999865    68999999999999999999854

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.43  E-value=5.4e-14  Score=106.80  Aligned_cols=53  Identities=19%  Similarity=0.456  Sum_probs=48.3

Q ss_pred             CceEEEEecCCCCCCCCC-------cccCCCCEEEEEEecCCCeeEEEe---CCeeEEEEeee
Q psy824            5 FVVLAEAVWDHVAMEAEE-------LGFRAGDVIEVLDTLDRDWWWGTR---GEAFEHLSQII   57 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~e-------L~~~~gd~i~v~~~~~~~Ww~g~~---~~~~g~~p~~~   57 (518)
                      ...+|+|+|||.+..+++       |+|++||+|.|+++.|++||.|++   +|..|+||+.+
T Consensus        20 ~~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~   82 (96)
T d1t0ha_          20 VAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV   82 (96)
T ss_dssp             CCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHH
T ss_pred             ccEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcH
Confidence            457899999999999998       999999999999999999999998   57789999754

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.9e-14  Score=107.44  Aligned_cols=62  Identities=26%  Similarity=0.370  Sum_probs=52.0

Q ss_pred             cceeEEEEeecCCCCC------CCCCCCCCCCEEEEEecCC-CCeEEEE-ECCeeEEEcCCCEEEcccCC
Q psy824          137 DFVVLAEAVWDHVAME------AEELGFRAGDVIEVLDTLD-RDWWWGT-RGEASGWFPSAFVRLRVSQE  198 (518)
Q Consensus       137 ~~~~~~~a~~~~~~~~------~~eL~~~~g~~i~v~~~~~-~~w~~~~-~~g~~G~~P~~~v~~~~~~~  198 (518)
                      .....|+|+|||+++.      ++||+|++||+|.|+.+.+ ++||.+. .+|+.||||++||+.+....
T Consensus        15 ~~~~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~~G~~G~~P~nyve~~~~~~   84 (96)
T d1wiea_          15 GKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQDNE   84 (96)
T ss_dssp             SCEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCCSCC
T ss_pred             CCceEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeCCCCEEEEehHHeEECCCcc
Confidence            3567899999998764      4799999999999998765 5688887 58999999999999887554

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8.4e-15  Score=106.39  Aligned_cols=59  Identities=29%  Similarity=0.609  Sum_probs=52.4

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEEE-CCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR-GEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~~-~g~~G~~P~~~v~~~~~~  197 (518)
                      ...++|+|+|.++.++||+|++||+|.|+++.++|||.|+. +++.|+||++||+.+...
T Consensus         6 ~~~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~~G~fP~~yv~~~~~~   65 (71)
T d2hspa_           6 KCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             SSCEECCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBCSSCCSCCEETTTCCSCSCC
T ss_pred             cEEEEEcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEECCeEEEEEchHHeEEcCCc
Confidence            35789999999999999999999999999999999999995 455569999999988654

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=9.2e-14  Score=104.26  Aligned_cols=57  Identities=32%  Similarity=0.577  Sum_probs=50.2

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEecC-----CCCeEEEEE----------CCeeEEEcCCCEEEc
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL-----DRDWWWGTR----------GEASGWFPSAFVRLR  194 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~-----~~~w~~~~~----------~g~~G~~P~~~v~~~  194 (518)
                      ....|+|+|+|.|+.++||+|++||+|.|+.+.     ++|||.|..          +|+.|+||+|||+.+
T Consensus        11 ~~~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~i   82 (83)
T d1bb9a_          11 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV   82 (83)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             CCEEEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEc
Confidence            446899999999999999999999999999764     368999974          468999999999986

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.4e-13  Score=106.48  Aligned_cols=58  Identities=28%  Similarity=0.567  Sum_probs=52.6

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecC--CCCeEEEEECCeeEEEcCCCEEEcccC
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTL--DRDWWWGTRGEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~--~~~w~~~~~~g~~G~~P~~~v~~~~~~  197 (518)
                      ..++|+|||.++.++||+|++||+|.|+++.  +.+||.++.+|+.||||.+||+.+...
T Consensus         6 ~~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~~g~~G~~P~~Yve~~~~~   65 (93)
T d1uffa_           6 SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             CCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSS
T ss_pred             eEEEECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEEeCCcEEEEchHHEEECCCC
Confidence            4689999999999999999999999999875  467899999999999999999998754

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=1.7e-13  Score=100.53  Aligned_cols=60  Identities=15%  Similarity=0.111  Sum_probs=52.8

Q ss_pred             cCceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe------CCeeEEEEeeeeeccCC
Q psy824            4 DFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR------GEAFEHLSQIIINHSIS   63 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~------~~~~g~~p~~~v~~~~~   63 (518)
                      .....++|||||.++.++||+|++||+|.|+++.+++||.++.      +|+.|+||++|++....
T Consensus         5 s~g~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~~   70 (74)
T d1wfwa_           5 SSGSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPFSG   70 (74)
T ss_dssp             CCSCEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBCCS
T ss_pred             CCCCEEEEeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEECCC
Confidence            4567899999999999999999999999999999999999876      35789999999885443

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6.3e-14  Score=104.28  Aligned_cols=59  Identities=20%  Similarity=0.337  Sum_probs=52.1

Q ss_pred             eeEEEEeecCCCCCCCCCCCCCCCEEEEEecC---------------CCCeEEEEE--CCeeEEEcCCCEEEcccC
Q psy824          139 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL---------------DRDWWWGTR--GEASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~---------------~~~w~~~~~--~g~~G~~P~~~v~~~~~~  197 (518)
                      +..++|+|+|.+..++||+|++||+|.|+.+.               ++|||.|+.  +|+.||||++||+.+...
T Consensus         3 G~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~~~   78 (83)
T d1phta_           3 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGRK   78 (83)
T ss_dssp             EEEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEEE
T ss_pred             CCEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcCCc
Confidence            35789999999999999999999999999753               468999984  899999999999998653

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.41  E-value=6.7e-14  Score=96.70  Aligned_cols=52  Identities=17%  Similarity=0.410  Sum_probs=45.6

Q ss_pred             EEEeecCCCCCCCCCCCCCCCEEEEEecCCC-CeEEEE--ECCeeEEEcCCCEEE
Q psy824          142 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDR-DWWWGT--RGEASGWFPSAFVRL  193 (518)
Q Consensus       142 ~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~-~w~~~~--~~g~~G~~P~~~v~~  193 (518)
                      ++|+|||.|+.++||+|++||+|.|++..+. +||.+.  .+|+.|+||++||++
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyvev   56 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIRI   56 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEEC
Confidence            6899999999999999999999999988764 556655  579999999999974

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.4e-14  Score=104.27  Aligned_cols=57  Identities=14%  Similarity=0.182  Sum_probs=50.0

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEec---------------CCCeeEEEe--CCeeEEEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL---------------DRDWWWGTR--GEAFEHLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~---------------~~~Ww~g~~--~~~~g~~p~~~v~~~   61 (518)
                      .+..++|||||.++.++||+|++||+|.|+.+.               ++|||.|++  .|+.|+||++||+..
T Consensus         2 ~G~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i   75 (83)
T d1phta_           2 EGYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYI   75 (83)
T ss_dssp             EEEEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEE
T ss_pred             CCCEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEc
Confidence            367899999999999999999999999999753               468999986  678899999999853

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=8e-14  Score=96.29  Aligned_cols=51  Identities=14%  Similarity=0.208  Sum_probs=44.2

Q ss_pred             EEEecCCCCCCCCCcccCCCCEEEEEEecCCC-eeEEE--eCCeeEEEEeeeee
Q psy824            9 AEAVWDHVAMEAEELGFRAGDVIEVLDTLDRD-WWWGT--RGEAFEHLSQIIIN   59 (518)
Q Consensus         9 ~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~-Ww~g~--~~~~~g~~p~~~v~   59 (518)
                      |+|||||.|+.++||+|++||+|.|+++.+.+ ||.+.  .+|+.|+||++||+
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyve   55 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   55 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEE
Confidence            79999999999999999999999999987755 55544  45788999999986

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.6e-13  Score=104.06  Aligned_cols=57  Identities=19%  Similarity=0.331  Sum_probs=50.9

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecC--CCeeEEEeCCeeEEEEeeeeeccC
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD--RDWWWGTRGEAFEHLSQIIINHSI   62 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~--~~Ww~g~~~~~~g~~p~~~v~~~~   62 (518)
                      ...++|||||.++.++||+|++||+|.|+++.+  .+||.|+++|+.|+||++||+...
T Consensus         5 ~~~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~~g~~G~~P~~Yve~~~   63 (93)
T d1uffa_           5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMP   63 (93)
T ss_dssp             CCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECC
T ss_pred             CeEEEECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEEeCCcEEEEchHHEEECC
Confidence            346899999999999999999999999998764  578999999999999999998553

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=2.9e-13  Score=96.94  Aligned_cols=55  Identities=24%  Similarity=0.498  Sum_probs=47.6

Q ss_pred             eEEEEeecCCC------CCCCCCCCCCCCEEEEEec-CCCCeEEEEE--CCeeEEEcCCCEEEc
Q psy824          140 VLAEAVWDHVA------MEAEELGFRAGDVIEVLDT-LDRDWWWGTR--GEASGWFPSAFVRLR  194 (518)
Q Consensus       140 ~~~~a~~~~~~------~~~~eL~~~~g~~i~v~~~-~~~~w~~~~~--~g~~G~~P~~~v~~~  194 (518)
                      ..++|+++|.+      +..+||+|++||+|.|++. .++|||.|+.  +|+.||||++||+++
T Consensus         5 Pk~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_           5 PKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             CEEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CcEEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            36788888865      6778999999999999975 4679999995  799999999999986

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.3e-13  Score=96.25  Aligned_cols=56  Identities=21%  Similarity=0.461  Sum_probs=48.4

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEe--CCeeEEEEeeeeecc
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTR--GEAFEHLSQIIINHS   61 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~--~~~~g~~p~~~v~~~   61 (518)
                      ..++++|||||.++.++||+|++||+|.|+++ +++||+++.  +|+.|+||++||+..
T Consensus         3 ~~~~vvAlydy~~~~~~eLs~~~Gd~i~v~~~-~~~ww~~~~~~~g~~G~vP~~yv~~~   60 (65)
T d1qcfa1           3 IRIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRKEGYIPSNYVARV   60 (65)
T ss_dssp             CCCEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTCCEEEEEGGGEEET
T ss_pred             CcEEEEECCcCCCCCcCccCCCCCCEEEEEEE-CCCCEEEEEccCCCEEEEchHHeEEC
Confidence            35679999999999999999999999999986 557988765  467899999999854

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.3e-13  Score=96.66  Aligned_cols=56  Identities=18%  Similarity=0.405  Sum_probs=50.0

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEEeC--CeeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGTRG--EAFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~--~~~g~~p~~~v~~~   61 (518)
                      +..++|+|||.|+.++||+|++||+|.|+++.+++||.|+..  |+.|+||++||+..
T Consensus         2 ~~~~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g~~G~vP~~yv~~~   59 (64)
T d1fmka1           2 VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPS   59 (64)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTCCEEEEEGGGEEET
T ss_pred             eeEEEECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCCCEEEEehHHeEEC
Confidence            356799999999999999999999999999988999999864  57899999999853

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=1.5e-13  Score=95.68  Aligned_cols=56  Identities=27%  Similarity=0.436  Sum_probs=48.9

Q ss_pred             eEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE-eCCeeEEEEeeeeeccCC
Q psy824            7 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT-RGEAFEHLSQIIINHSIS   63 (518)
Q Consensus         7 ~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~-~~~~~g~~p~~~v~~~~~   63 (518)
                      .+|+|+|||.|+.++||+|++||+|.|+++. ++||.++ .+|+.|+||++||+...+
T Consensus         2 ~~a~alydf~a~~~~ELs~~~Gd~i~v~~~~-~~ww~~~~~~g~~G~~P~nyve~i~~   58 (59)
T d1i07a_           2 KYAKSKYDFVARNSSELSVMKDDVLEILDDR-RQWWKVRNASGDSGFVPNNILDIMRT   58 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGGG-CCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEEccCCCCCCCCeeeEcCCCEEEEEEEc-CCcEEEEEcCCCEEEECHHHeEECCC
Confidence            4799999999999999999999999999875 5899987 467889999999986543

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=5.4e-14  Score=109.35  Aligned_cols=55  Identities=25%  Similarity=0.479  Sum_probs=48.4

Q ss_pred             ceEEEEecCCCCCCC-----CCcccCCCCEEEEEEecCCCeeEEEe------CCeeEEEEeeeeec
Q psy824            6 VVLAEAVWDHVAMEA-----EELGFRAGDVIEVLDTLDRDWWWGTR------GEAFEHLSQIIINH   60 (518)
Q Consensus         6 ~~~~~al~d~~~~~~-----~eL~~~~gd~i~v~~~~~~~Ww~g~~------~~~~g~~p~~~v~~   60 (518)
                      +.+++|||||.++.+     .||+|++||+|.|+++.++|||.|+.      +|+.|+||++|+.+
T Consensus         1 ~~~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e   66 (96)
T d1kjwa1           1 GFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE   66 (96)
T ss_dssp             CEEEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHH
T ss_pred             CEEEEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceee
Confidence            468999999999863     49999999999999999999999985      46789999988864

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=2.4e-13  Score=101.91  Aligned_cols=58  Identities=22%  Similarity=0.412  Sum_probs=49.4

Q ss_pred             ccCceEEEEecCCCCCCCCCcccCCCCEEEEEEecC-----CCeeEEEeC----------CeeEEEEeeeeec
Q psy824            3 EDFVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLD-----RDWWWGTRG----------EAFEHLSQIIINH   60 (518)
Q Consensus         3 ~~~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~-----~~Ww~g~~~----------~~~g~~p~~~v~~   60 (518)
                      +.....|+|+|||+|+.++||+|++||+|.|+.+.+     +|||.|...          |+.|+||++||+.
T Consensus         9 p~~~~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~   81 (83)
T d1bb9a_           9 PGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTER   81 (83)
T ss_dssp             TTCCEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEE
T ss_pred             CCCCEEEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEE
Confidence            344578999999999999999999999999998653     689999763          4579999999984

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.6e-13  Score=94.49  Aligned_cols=53  Identities=25%  Similarity=0.540  Sum_probs=47.5

Q ss_pred             eEEEEeecCCCCCCCCCCCCCCCEEEEEecCCCCeEEEE--ECCeeEEEcCCCEEE
Q psy824          140 VLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEASGWFPSAFVRL  193 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~~~~~w~~~~--~~g~~G~~P~~~v~~  193 (518)
                      ..++|+|||.++.++||+|++||+|.|++..+ +||+++  .+|+.||||++||+.
T Consensus         7 ~~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~~-~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           7 NLVIALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCS-SEEEEEETTTCCEEEEEGGGEEE
T ss_pred             cEEEECCCCCcCCcCCcCCCCCCEEEEeEEcC-CCEEEEeccCCeEeEEcHHHEEe
Confidence            47899999999999999999999999999865 677776  579999999999975

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=7.4e-13  Score=94.76  Aligned_cols=55  Identities=15%  Similarity=0.306  Sum_probs=47.2

Q ss_pred             CceEEEEecCCCC------CCCCCcccCCCCEEEEEEe-cCCCeeEEEe--CCeeEEEEeeeee
Q psy824            5 FVVLAEAVWDHVA------MEAEELGFRAGDVIEVLDT-LDRDWWWGTR--GEAFEHLSQIIIN   59 (518)
Q Consensus         5 ~~~~~~al~d~~~------~~~~eL~~~~gd~i~v~~~-~~~~Ww~g~~--~~~~g~~p~~~v~   59 (518)
                      ....++|+++|.+      ++++||+|++||+|.|+++ .++|||.|++  +|+.|+||++||+
T Consensus         3 ~~Pk~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~g~~G~fP~nyVe   66 (69)
T d1gcqc_           3 HMPKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVH   66 (69)
T ss_dssp             SCCEEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTTTEEEEEEGGGEE
T ss_pred             CCCcEEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCCCCEEEEeHHHEE
Confidence            3556789999976      6789999999999999976 4579999997  5889999999987

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.3e-13  Score=103.56  Aligned_cols=59  Identities=17%  Similarity=0.210  Sum_probs=49.3

Q ss_pred             cCceEEEEecCCCCCC------CCCcccCCCCEEEEEEecC-CCeeEEE-eCCeeEEEEeeeeeccC
Q psy824            4 DFVVLAEAVWDHVAME------AEELGFRAGDVIEVLDTLD-RDWWWGT-RGEAFEHLSQIIINHSI   62 (518)
Q Consensus         4 ~~~~~~~al~d~~~~~------~~eL~~~~gd~i~v~~~~~-~~Ww~g~-~~~~~g~~p~~~v~~~~   62 (518)
                      ..+.+|+|+|||.++.      ++||+|++||+|.|+.+.+ ++||.+. .+|+.|+||++||+...
T Consensus        15 ~~~~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~~G~~G~~P~nyve~~~   81 (96)
T d1wiea_          15 GKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNFVDFVQ   81 (96)
T ss_dssp             SCEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEETTCCBCBCCTTSEECCC
T ss_pred             CCceEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeCCCCEEEEehHHeEECC
Confidence            4568999999998864      5899999999999998766 4678886 46788999999998654

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=5.2e-13  Score=94.24  Aligned_cols=55  Identities=16%  Similarity=0.329  Sum_probs=47.3

Q ss_pred             CceEEEEecCCCCCCCCCcccCCCCEEEEEEecCCCeeEEE--eCCeeEEEEeeeeec
Q psy824            5 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDTLDRDWWWGT--RGEAFEHLSQIIINH   60 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~--~~~~~g~~p~~~v~~   60 (518)
                      ....++|+|||.++.++||+|++||+|.|+++.+ +||.++  .+|+.|+||++||++
T Consensus         5 ~~~~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~~-~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           5 QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             TTCEEEESSCBCCCSTTBCCBCTTCEEEEEECCS-SEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CCcEEEECCCCCcCCcCCcCCCCCCEEEEeEEcC-CCEEEEeccCCeEeEEcHHHEEe
Confidence            3457999999999999999999999999998865 677765  457889999999874

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=8.4e-13  Score=103.40  Aligned_cols=56  Identities=23%  Similarity=0.372  Sum_probs=49.0

Q ss_pred             ceEEEEecCCCCCCCCCcccCCCCEEEEEEec---CCCeeEEEeCC--------eeEEEEeeeeecc
Q psy824            6 VVLAEAVWDHVAMEAEELGFRAGDVIEVLDTL---DRDWWWGTRGE--------AFEHLSQIIINHS   61 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~eL~~~~gd~i~v~~~~---~~~Ww~g~~~~--------~~g~~p~~~v~~~   61 (518)
                      +..|+|||||.|+.++||+|++||+|.|+++.   +.+||.|.+.|        +.|+||++||++.
T Consensus        21 ~~~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~   87 (106)
T d1i1ja_          21 ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVRED   87 (106)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEE
T ss_pred             eeEEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEc
Confidence            45799999999999999999999999999873   47899998755        4699999999864

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.32  E-value=6.1e-13  Score=100.93  Aligned_cols=54  Identities=24%  Similarity=0.533  Sum_probs=49.5

Q ss_pred             ceeEEEEeecCCCCCCCC-------CCCCCCCEEEEEecCCCCeEEEEE---CCeeEEEcCCCE
Q psy824          138 FVVLAEAVWDHVAMEAEE-------LGFRAGDVIEVLDTLDRDWWWGTR---GEASGWFPSAFV  191 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~e-------L~~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v  191 (518)
                      ....++|+|||++..+++       |+|++||+|.|+++.+++||.|+.   +|+.|+||++++
T Consensus        20 ~~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          20 VAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             CCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             ccEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHH
Confidence            446899999999999988       999999999999999999999996   689999999874

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.5e-12  Score=101.96  Aligned_cols=60  Identities=28%  Similarity=0.423  Sum_probs=51.9

Q ss_pred             ceeEEEEeecCCCCCCCCCCCCCCCEEEEEec---CCCCeEEEEEC--------CeeEEEcCCCEEEcccC
Q psy824          138 FVVLAEAVWDHVAMEAEELGFRAGDVIEVLDT---LDRDWWWGTRG--------EASGWFPSAFVRLRVSQ  197 (518)
Q Consensus       138 ~~~~~~a~~~~~~~~~~eL~~~~g~~i~v~~~---~~~~w~~~~~~--------g~~G~~P~~~v~~~~~~  197 (518)
                      +...|+|+|||.+++.+||+|++||+|.|+++   .+++||.|+..        |+.||||++||+.+...
T Consensus        20 ~~~~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~~~~   90 (106)
T d1i1ja_          20 PISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTL   90 (106)
T ss_dssp             CSEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEEC
T ss_pred             eeeEEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEcccc
Confidence            34579999999999999999999999999986   34789999864        46899999999987643

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=2.9e-13  Score=105.09  Aligned_cols=54  Identities=31%  Similarity=0.594  Sum_probs=48.2

Q ss_pred             eEEEEeecCCCCCC-----CCCCCCCCCEEEEEecCCCCeEEEEE------CCeeEEEcCCCEEE
Q psy824          140 VLAEAVWDHVAMEA-----EELGFRAGDVIEVLDTLDRDWWWGTR------GEASGWFPSAFVRL  193 (518)
Q Consensus       140 ~~~~a~~~~~~~~~-----~eL~~~~g~~i~v~~~~~~~w~~~~~------~g~~G~~P~~~v~~  193 (518)
                      .+++|+|||+++.+     .||+|++||+|.|+++.++|||.|+.      +|+.||||++||+.
T Consensus         2 ~~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e   66 (96)
T d1kjwa1           2 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE   66 (96)
T ss_dssp             EEEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHH
T ss_pred             EEEEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceee
Confidence            57899999999863     48999999999999999999999984      68999999999964

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=1.1e-11  Score=98.95  Aligned_cols=65  Identities=17%  Similarity=0.272  Sum_probs=57.3

Q ss_pred             ccceEeeeeEEEEecCcc--cceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCCC
Q psy824          451 SSQLIHQGEVIRVTSGMW--TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKG  515 (518)
Q Consensus       451 ~r~ll~~g~l~~~~~~~~--~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~  515 (518)
                      ||.||++|+|+++..+..  .+.+|+|||||+||+|+++..++.+|.++..|||+++.|.+++|++.
T Consensus         1 GR~li~eG~l~~~~~~~~k~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~l~~~~v~~~~d~~~   67 (109)
T d1zc3b1           1 GQYLVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDNPP   67 (109)
T ss_dssp             CCCEEEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEECCBTT
T ss_pred             CCEEEEeeeEEEEccCCCCcceeEEEEEecCEEEEEEEcCCcceEEEeeeEEeccceEEEEeecccc
Confidence            689999999999876654  46889999999999999877667789999999999999999998764

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.19  E-value=1e-11  Score=103.74  Aligned_cols=52  Identities=17%  Similarity=0.416  Sum_probs=47.5

Q ss_pred             ceEEEEecCCCCCCCCC-------cccCCCCEEEEEEecCCCeeEEEe---CCeeEEEEeee
Q psy824            6 VVLAEAVWDHVAMEAEE-------LGFRAGDVIEVLDTLDRDWWWGTR---GEAFEHLSQII   57 (518)
Q Consensus         6 ~~~~~al~d~~~~~~~e-------L~~~~gd~i~v~~~~~~~Ww~g~~---~~~~g~~p~~~   57 (518)
                      ..+++|+|||.+..+++       |+|++||+|.|+++.|++||.|+.   +|..|+||+++
T Consensus        23 ~f~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~   84 (145)
T d1vyva1          23 AFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPL   84 (145)
T ss_dssp             CEEEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHH
T ss_pred             cEEEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCch
Confidence            45799999999999998       999999999999999999999997   67789999854

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3.1e-10  Score=92.06  Aligned_cols=75  Identities=23%  Similarity=0.298  Sum_probs=59.6

Q ss_pred             ccCCCccccccccceEeeeeEEEEecCc---ccceEEEEEeCCeEEEEeeccC--CCCceEEEEEeecCCeeEEEcCCCC
Q psy824          440 EGWEGEDLIETSSQLIHQGEVIRVTSGM---WTNTITLFLFDHQLVYCKRDIL--KRNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       440 ~~~~~~~l~~~~r~ll~~g~l~~~~~~~---~~~~~~~fLF~d~ll~~k~~~~--~~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      +||++ +|...| +||++|++.+.....   ..++||+|||||+||+||++..  ....|.++..+++.++.|.+..+++
T Consensus         1 eG~~g-~l~~~G-~Ll~~g~l~v~~~~~~~~k~~~R~~FLF~d~Ll~~K~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (121)
T d1ntya2           1 EGFDE-NIESQG-ELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEGD   78 (121)
T ss_dssp             ESCCS-CSGGGC-CEEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEEEECCCTTC
T ss_pred             CCCcc-chhhCC-cEEEEeEEEEEcccccCCCCcEEEEEeeCCeEEEEEEecCCCCCceeEEEeeEEecceEEEEcCCCC
Confidence            47877 577765 599999998776543   2469999999999999997542  3357899999999999999988776


Q ss_pred             CC
Q psy824          515 GR  516 (518)
Q Consensus       515 ~~  516 (518)
                      .+
T Consensus        79 ~~   80 (121)
T d1ntya2          79 PC   80 (121)
T ss_dssp             TT
T ss_pred             Cc
Confidence            43

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.04  E-value=9e-11  Score=97.83  Aligned_cols=52  Identities=23%  Similarity=0.516  Sum_probs=48.1

Q ss_pred             eEEEEeecCCCCCCCC-------CCCCCCCEEEEEecCCCCeEEEEE---CCeeEEEcCCCE
Q psy824          140 VLAEAVWDHVAMEAEE-------LGFRAGDVIEVLDTLDRDWWWGTR---GEASGWFPSAFV  191 (518)
Q Consensus       140 ~~~~a~~~~~~~~~~e-------L~~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v  191 (518)
                      ..++|+|||.+..+++       |+|++||+|.|+++.+++||.|+.   +|+.|+||++|+
T Consensus        24 f~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~   85 (145)
T d1vyva1          24 FAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLR   85 (145)
T ss_dssp             EEEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHH
T ss_pred             EEEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchh
Confidence            4799999999999987       999999999999999999999995   799999998764

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=1.5e-10  Score=94.34  Aligned_cols=54  Identities=19%  Similarity=0.383  Sum_probs=47.3

Q ss_pred             CceEEEEecCCCCCCCCC-------cccCCCCEEEEEEecCCCeeEEEe---CCeeEEEEeeee
Q psy824            5 FVVLAEAVWDHVAMEAEE-------LGFRAGDVIEVLDTLDRDWWWGTR---GEAFEHLSQIII   58 (518)
Q Consensus         5 ~~~~~~al~d~~~~~~~e-------L~~~~gd~i~v~~~~~~~Ww~g~~---~~~~g~~p~~~v   58 (518)
                      ....++|+|||.+..+++       |+|++||+|.|+++.|.+||.|+.   +|..|++|+.++
T Consensus        22 ~~~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~   85 (136)
T d1vyua1          22 VAFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR   85 (136)
T ss_dssp             CCEEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             ceEEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHH
Confidence            356799999999999888       899999999999999999999986   456799998653

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=2.1e-10  Score=94.56  Aligned_cols=80  Identities=16%  Similarity=0.346  Sum_probs=65.6

Q ss_pred             HHHhcccCCCccccccccceEeeeeEEEEecCc-ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCC
Q psy824          435 WQQRVEGWEGEDLIETSSQLIHQGEVIRVTSGM-WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG  513 (518)
Q Consensus       435 ~~~~i~~~~~~~l~~~~r~ll~~g~l~~~~~~~-~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~  513 (518)
                      ++..|.||+|.+|... ++++++|.+.+..... +.++|++|||+|+||+||++. .+..|.++..|+|.+|.|.+++++
T Consensus        10 l~~~i~gweG~~l~~~-G~li~~g~~~~~~~~~~~~k~R~~fLF~~~Ll~~k~~~-~~~~~~~k~~i~l~~~~v~~~~~~   87 (132)
T d1v61a_          10 LSEPIQAWEGDDIKTL-GNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASP-RMSGFMYQGKIPIAGMVVNRLDEI   87 (132)
T ss_dssp             TTSCCBTCCSSCSTTT-CCCSCEEEEEBCCSSSSCCCEEEEEECSSCEEEEECSS-SSSCCEEEEEECTTTCBCSTTCSS
T ss_pred             hhhccCCccCCChhhc-cCEEEEEEEEEEEecCCCcceEEEEEeCCEEEEEEEcC-CCceeEEeeecchhhccccccccc
Confidence            4578999999888766 6799999987765443 467999999999999999763 345799999999999999998877


Q ss_pred             CCC
Q psy824          514 KGR  516 (518)
Q Consensus       514 ~~~  516 (518)
                      +..
T Consensus        88 ~~~   90 (132)
T d1v61a_          88 EGS   90 (132)
T ss_dssp             SSS
T ss_pred             cCc
Confidence            643

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=4.7e-09  Score=87.86  Aligned_cols=73  Identities=26%  Similarity=0.409  Sum_probs=58.6

Q ss_pred             cCCCccccccccceEeeeeEEEEecCc------------ccceEEEEEeCCeEEEEeeccC------CCCceEEEEEeec
Q psy824          441 GWEGEDLIETSSQLIHQGEVIRVTSGM------------WTNTITLFLFDHQLVYCKRDIL------KRNTHVYKARLNI  502 (518)
Q Consensus       441 ~~~~~~l~~~~r~ll~~g~l~~~~~~~------------~~~~~~~fLF~d~ll~~k~~~~------~~~~~~~k~~i~l  502 (518)
                      ||+| +|...| +||.+|.+.+...++            +.++||+|||+|+|||||++..      ....|.+++.|++
T Consensus         2 G~~g-~l~~~G-~Ll~qg~~~v~~~~~~~~~~~~~~~~~K~~~R~~FLF~~~Li~cK~~~~~~~~~~~~~~y~~k~~~~~   79 (147)
T d1kz7a2           2 GYDG-NLGDLG-KLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNM   79 (147)
T ss_dssp             SCCS-CGGGGC-CEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEG
T ss_pred             CCCC-cHHHcC-CEEEeeeEEEEecCccchhhhhhhhccCCceEEEEEecCcEEEEEecccCCcccccCceEEEeeEEec
Confidence            7888 688875 599999998765432            2469999999999999997542      2357999999999


Q ss_pred             CCeeEEEcCCCCC
Q psy824          503 DTSQIINLPDGKG  515 (518)
Q Consensus       503 ~~~~v~~~~d~~~  515 (518)
                      +++.|.+..+++.
T Consensus        80 ~~~~v~~~~~~~~   92 (147)
T d1kz7a2          80 TAVGITENVKGDT   92 (147)
T ss_dssp             GGEEEECCBTTBT
T ss_pred             CCceeEecCCCCc
Confidence            9999999887753

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: UNC-89
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.86  E-value=1.2e-09  Score=87.08  Aligned_cols=65  Identities=11%  Similarity=0.140  Sum_probs=53.9

Q ss_pred             ccccccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccCC-CCceEEEEEeecCCeeEEEcCC
Q psy824          447 LIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILK-RNTHVYKARLNIDTSQIINLPD  512 (518)
Q Consensus       447 l~~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~-~~~~~~k~~i~l~~~~v~~~~d  512 (518)
                      |... ++||.+|.+.+...+++.++||+|||+|+||+||++... ...|+||+.|+|+++.|.+..+
T Consensus         4 l~~~-G~ll~~~~f~v~~~~~k~k~R~vFLF~~~ll~~K~~~~~~~~~y~~K~~i~l~~~~v~e~~g   69 (119)
T d1fhoa_           4 TGKL-GRIIRHDAFQVWEGDEPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQHTT   69 (119)
T ss_dssp             CCCC-CCSSEEEEEEECSTTCSCEEEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEECT
T ss_pred             hhhC-CceEEEeEEEEEeCCCCceEEEEEEEcCeEEEEEeccCCCCceEEEecEEECCceEEEEcCC
Confidence            5555 678899998887766667899999999999999976533 3579999999999999998753

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.79  E-value=1.3e-09  Score=88.55  Aligned_cols=53  Identities=23%  Similarity=0.461  Sum_probs=47.6

Q ss_pred             eeEEEEeecCCCCCCCC-------CCCCCCCEEEEEecCCCCeEEEEE---CCeeEEEcCCCE
Q psy824          139 VVLAEAVWDHVAMEAEE-------LGFRAGDVIEVLDTLDRDWWWGTR---GEASGWFPSAFV  191 (518)
Q Consensus       139 ~~~~~a~~~~~~~~~~e-------L~~~~g~~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v  191 (518)
                      ...++|+|||++..+++       |+|+.||+|.|+++.|++||.|+.   +|..|+||+.|+
T Consensus        23 ~~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~   85 (136)
T d1vyua1          23 AFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR   85 (136)
T ss_dssp             CEEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             eEEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHH
Confidence            45799999999998887       899999999999999999999994   578999999874

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.6e-09  Score=90.47  Aligned_cols=64  Identities=16%  Similarity=0.274  Sum_probs=51.8

Q ss_pred             ccccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccC-------------CCCceEEEEEeecCCeeEEEcCCCCC
Q psy824          449 ETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDIL-------------KRNTHVYKARLNIDTSQIINLPDGKG  515 (518)
Q Consensus       449 ~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~-------------~~~~~~~k~~i~l~~~~v~~~~d~~~  515 (518)
                      -+.|+||++|.|.++..   .+++|+|||||+||+||++..             ....|+++..|+|..+.|.+..|+..
T Consensus        20 ~~~R~li~eG~L~k~~~---~k~r~~FLFnD~Ll~tK~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~~~~d~~~   96 (142)
T d1ki1b2          20 LGPRKFLHSGKLYKAKN---NKELYGFLFNDFLLLTQITKPLGSSGTDKVFSPKSNLQYMYKTPIFLNEVLVKLPTDPSG   96 (142)
T ss_dssp             SSBCCEEEECCCBCSSS---CCCCEEEEESSEEEEEEEECC-------CCSCSSCCEEEECSSCEEGGGEEEECCSSSCC
T ss_pred             cCCeEEEEeeEEEEecC---CCEEEEEEecCEEEEEEeccccceeccccccccCCceeEEEEcccchhhheeeccCCccc
Confidence            34599999999987644   358999999999999997642             12358889999999999999988753

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=98.66  E-value=1.4e-08  Score=80.91  Aligned_cols=61  Identities=15%  Similarity=0.283  Sum_probs=45.5

Q ss_pred             eEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccCC--------------CCceEEEEEeecCCeeEEEcCCCC
Q psy824          454 LIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILK--------------RNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       454 ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~--------------~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      |||+|.|.......+.+++|+|||+|+||+||++..+              ...+.++.+|+|+++.|.++.+++
T Consensus         1 Li~eG~L~~~~~~~k~~er~vFLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~e~~~d~   75 (114)
T d1txda2           1 MIHEGPLVWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVATDN   75 (114)
T ss_dssp             EEEEEEEEEESSSSCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEECCC-C
T ss_pred             CceeeeEEEEecCCCceEEEEEEecCeEEEEEecccccccccccccccccccceeeecCcEEcccEEEEEcCCCC
Confidence            7999999755444446799999999999999976421              134677889999999999986554

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=2.3e-08  Score=82.91  Aligned_cols=74  Identities=18%  Similarity=0.245  Sum_probs=51.3

Q ss_pred             hcccCCCccccccccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccCCC--------------CceEEEEEeecC
Q psy824          438 RVEGWEGEDLIETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKR--------------NTHVYKARLNID  503 (518)
Q Consensus       438 ~i~~~~~~~l~~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~--------------~~~~~k~~i~l~  503 (518)
                      .|.+|++  +..++|+||++|.|.....++..+++|+|||||+||+||++..+.              ....+...+++.
T Consensus        11 ~~~~~~~--l~~~~R~Li~eG~L~~k~~~~k~k~r~~FLF~D~Ll~tk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   88 (140)
T d1xcga2          11 LAAEFKS--LDLTTRKMIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLN   88 (140)
T ss_dssp             TTGGGGG--CCGGGSCEEEEEEEEECCSSSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGG
T ss_pred             hHhhhcc--cCcccceEEEEeeEEEEecCCCceEEEEEEecCeEEEEEecccceeeccccccccccccceeeecceEecc
Confidence            3455654  444579999999997655545567999999999999999764211              011233468888


Q ss_pred             CeeEEEcCCC
Q psy824          504 TSQIINLPDG  513 (518)
Q Consensus       504 ~~~v~~~~d~  513 (518)
                      .+.+.++++.
T Consensus        89 ~~~~~~~~~~   98 (140)
T d1xcga2          89 AVLIRSVATD   98 (140)
T ss_dssp             GEEEEECSSC
T ss_pred             eEEEecCCCC
Confidence            8888887654

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0032  Score=43.75  Aligned_cols=39  Identities=18%  Similarity=0.352  Sum_probs=35.8

Q ss_pred             CCCCCCCCCCEEEEEecCCCCeEEEE-ECCeeEEEcCCCE
Q psy824          153 AEELGFRAGDVIEVLDTLDRDWWWGT-RGEASGWFPSAFV  191 (518)
Q Consensus       153 ~~eL~~~~g~~i~v~~~~~~~w~~~~-~~g~~G~~P~~~v  191 (518)
                      ..+|++++|+.|.|++..++|-|.++ ..|+.|+||.+++
T Consensus        36 ~~dL~vk~GE~ldVIr~t~~~k~LcRN~~GkYGYV~~~~l   75 (77)
T d1ri9a_          36 TRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYL   75 (77)
T ss_dssp             TTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGS
T ss_pred             cccCCcCCCCEEEEEEeCCCCeEEEEcCCCcEEEEEeeee
Confidence            45899999999999999999999999 7999999998775

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.026  Score=39.07  Aligned_cols=46  Identities=13%  Similarity=0.175  Sum_probs=35.7

Q ss_pred             EEEecCCCCC--CCCCcccCCCCEEEEEEecCCCeeEEEeC-CeeEEEE
Q psy824            9 AEAVWDHVAM--EAEELGFRAGDVIEVLDTLDRDWWWGTRG-EAFEHLS   54 (518)
Q Consensus         9 ~~al~d~~~~--~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~-~~~g~~p   54 (518)
                      ++|..+-...  ...+|+++.|+.|.|+...++|=|.++.. |..|+.+
T Consensus        23 ~~v~~~~~~~k~g~~dL~vk~GE~ldVIr~t~~~k~LcRN~~GkYGYV~   71 (77)
T d1ri9a_          23 TKVTTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVL   71 (77)
T ss_dssp             CBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEE
T ss_pred             EEEeeccccccCCcccCCcCCCCEEEEEEeCCCCeEEEEcCCCcEEEEE
Confidence            4455444333  35699999999999999999999999865 6778887

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.90  E-value=0.088  Score=39.81  Aligned_cols=66  Identities=14%  Similarity=0.091  Sum_probs=46.0

Q ss_pred             cccccceEeeeeEEEEecCcc-cceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824          448 IETSSQLIHQGEVIRVTSGMW-TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       448 ~~~~r~ll~~g~l~~~~~~~~-~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      ++..+.++++|.|.+.+.... -+.|+++|+++.+++.+.... .....-++.|+|.++.|..+++..
T Consensus         5 ~~~~~~v~k~G~L~K~~~~~k~WkkR~fvL~~~~~~~~~~~~~-~~~~~p~~~i~L~~~~i~~~~~~~   71 (116)
T d1x1ga1           5 VELSGTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPS-KEENRPVGGFSLRGSLVSALEDNG   71 (116)
T ss_dssp             CTTCSEEEEEEEEEEECSSSSSEEEEEEEEEESSCEEEEECSS-SCCSSCSCCEESTTCCCEECCSSS
T ss_pred             ccCCCCEEEEEEEEEEcCCCCCCceEEEEEECCCcEEEEeccc-cccccceeEEEcCCCEEEEecccC
Confidence            445689999999988765543 367999999988766654321 122234667899999888776543

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.49  E-value=0.17  Score=37.17  Aligned_cols=58  Identities=9%  Similarity=0.051  Sum_probs=40.4

Q ss_pred             eEeeeeEEEEecCcc-cceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCC
Q psy824          454 LIHQGEVIRVTSGMW-TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDG  513 (518)
Q Consensus       454 ll~~g~l~~~~~~~~-~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~  513 (518)
                      +|++|.|.+.+.... -+.|+++|+++.+++...+...  .-..++.|++.++.+....+.
T Consensus         2 v~k~G~L~k~~~~~k~WkkR~fvL~~~~~~l~~~~~~~--~~~~~~~i~~~~~~~~~~~~~   60 (104)
T d2i5fa1           2 IIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAG--AEDPLGAIHLRGCVVTSVESN   60 (104)
T ss_dssp             EEEEEEEEEECTTTCCEEEEEEEEETTTTEEEEECTTS--CSSCSEEEECTTCEEEEECC-
T ss_pred             EEEEEEEEEECCCCCCcEEEEEEEECCeeEEEEEcCcc--ccCccceEeecceEEEEeccC
Confidence            689999998875533 3789999999877666544322  223446789999988876654

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.00  E-value=0.27  Score=37.08  Aligned_cols=59  Identities=17%  Similarity=0.097  Sum_probs=43.5

Q ss_pred             cceEeeeeEEEEecCcc-cceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824          452 SQLIHQGEVIRVTSGMW-TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       452 r~ll~~g~l~~~~~~~~-~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      -..+++|.|.+.+.... -+.|+++|.++.|.+.+...    ....+..|+|..+.|..+.+..
T Consensus         6 s~~~k~G~L~K~~~~~k~WkkR~fvL~~~~l~y~~~~~----~~~~~~~~~l~~~~~~~~~~~~   65 (118)
T d1v89a_           6 SGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEE----DTKPQGCMYLPGCTIKEIATNP   65 (118)
T ss_dssp             SCEEEEEEEEEECSSSSCEEEEEEEEETTEEEEESSSS----CCSCSEEECSTTEEEEEECCCS
T ss_pred             CCCeEEEEEEEECCCCCCcEEEEEEEECCEEEEecccC----cccccceeccCceEEEEecccc
Confidence            35789999998765432 37899999999998886542    2234567999999998876543

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.66  E-value=0.25  Score=36.23  Aligned_cols=57  Identities=18%  Similarity=0.248  Sum_probs=42.1

Q ss_pred             EeeeeEEEEecC-cccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCCC
Q psy824          455 IHQGEVIRVTSG-MWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKG  515 (518)
Q Consensus       455 l~~g~l~~~~~~-~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~  515 (518)
                      |++|.|.+.+.. +.-+.|+++|.++.|.+.+..    .....++.|+|..+.|...++...
T Consensus         2 iK~G~L~k~~~~~k~W~kR~fvL~~~~L~yy~~~----~~~~~~~~i~l~~~~v~~~~~~~~   59 (101)
T d2fjla1           2 IKNGILYLEDPVNHEWYPHYFVLTSSKIYYSEET----SSDLLRGVLDVPACQIAIRPEGKN   59 (101)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEETTEEEECCCC----SCTCCCEEECSTTCEEEEETTCSS
T ss_pred             ceEEEEEEEcCCCCCCeEEEEEEECCEEEEEecc----ccceecceEEcCCceeEeeeeecc
Confidence            578888877653 234789999999999988643    223456789999999988776543

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.79  E-value=0.25  Score=36.97  Aligned_cols=59  Identities=12%  Similarity=0.143  Sum_probs=42.3

Q ss_pred             cceEeeeeEEEEecCc-ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824          452 SQLIHQGEVIRVTSGM-WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       452 r~ll~~g~l~~~~~~~-~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      ++.|++|.|.+.+... .-+.||++|.++.|++.+....    ..-+..|+|..+.+.......
T Consensus         3 ~~~ikeG~L~k~~~~~k~WkkryfvL~~~~L~~y~~~~~----~~p~~~i~l~~~~~~~~~~~~   62 (113)
T d1plsa_           3 PKRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSD----NSPKGMIPLKGSTLTSPCQDF   62 (113)
T ss_dssp             CCCSEEEEEEEESSSSSCCEEEEEEEETTEEEEESSTTC----SSCSEEEESSSCCEESSCCSS
T ss_pred             CCceEEEEEEEeCCCCCCceEEEEEEECCEEEEEecCCc----cccceEEECccCeEEeeeccc
Confidence            4678999998875433 3468999999999999965422    223467899999877665443

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.73  E-value=0.5  Score=38.39  Aligned_cols=61  Identities=11%  Similarity=0.157  Sum_probs=46.2

Q ss_pred             eEeeeeEEEEecCcc------cceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824          454 LIHQGEVIRVTSGMW------TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       454 ll~~g~l~~~~~~~~------~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      +|++|.|.+-+.++.      -+.|++.|-++.|.+.+....+...-..++.|+|..+.+++..+.+
T Consensus         3 vi~eG~L~Kr~~~k~k~~~~~WkrRwFVL~~~~L~Yyk~~~~~~~~~~~kG~I~L~~~~~v~~~~~~   69 (169)
T d1btka_           3 VILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPE   69 (169)
T ss_dssp             CCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCC
T ss_pred             EEEEEEEEEecCCCCCcCcCCceEEEEEEECCEEeeeccccccccccCccceEeccceEEEEeeccc
Confidence            688999988776432      3678999999999888765444445678899999999987765543

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.23  E-value=0.29  Score=36.08  Aligned_cols=58  Identities=12%  Similarity=0.033  Sum_probs=40.7

Q ss_pred             eEeeeeEEEEecCcc-----cceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCCC
Q psy824          454 LIHQGEVIRVTSGMW-----TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKG  515 (518)
Q Consensus       454 ll~~g~l~~~~~~~~-----~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~  515 (518)
                      +|++|.|.+.+.+..     -+.++++|-++.|.+.+....    ..-++.|+|.++.+...++...
T Consensus         1 vik~G~L~k~~~~~~~~~~~Wkkr~~vL~~~~L~y~~~~~~----~~~~~~i~l~~~~~~~~~~~~~   63 (106)
T d1u5da1           1 VIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKS----KQPKGTFLIKGYSVRMAPHLRR   63 (106)
T ss_dssp             EEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTC----SSCSEEEECTTCEEEECGGGCS
T ss_pred             CeEEEEEEEECCCCCCCcCCcEEEEEEEECCEEEEEecccc----cccccccccCCceEeecccccc
Confidence            589999988765432     257899999999988764422    2235678899988877665443

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.53  E-value=1.3  Score=34.86  Aligned_cols=58  Identities=12%  Similarity=0.163  Sum_probs=44.1

Q ss_pred             ccccceEeeeeEEEEecCcccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcC
Q psy824          449 ETSSQLIHQGEVIRVTSGMWTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLP  511 (518)
Q Consensus       449 ~~~r~ll~~g~l~~~~~~~~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~  511 (518)
                      .+++.++++|.|.+.+. ..-+.|+++|.+..|++.+..    .....++.|+|..+...+..
T Consensus        43 ~~g~~ilK~G~L~Kr~~-~~wkkR~FvL~~~~L~YYkd~----~~~~~kG~I~L~~~~~v~~~  100 (147)
T d1w1ha_          43 VENNLILKMGPVDKRKG-LFARRRQLLLTEGPHLYYVDP----VNKVLKGEIPWSQELRPEAK  100 (147)
T ss_dssp             TTTCCEEEEEEEEECCT-TSCEEEEEEEETTTEEEEEET----TTTEEEEEECCCTTCEEEEE
T ss_pred             cCCCeEEEEEEEEeecC-CcceEEEEEEcCCeeEEEeCC----CcccccceEEeccccccccc
Confidence            35688999999998654 335788999999999999754    22457899999887765543

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.91  E-value=0.58  Score=34.54  Aligned_cols=60  Identities=7%  Similarity=-0.083  Sum_probs=43.7

Q ss_pred             ceEeeeeEEEEecCcc-cceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCCCC
Q psy824          453 QLIHQGEVIRVTSGMW-TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKGR  516 (518)
Q Consensus       453 ~ll~~g~l~~~~~~~~-~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~  516 (518)
                      .-+++|.|.+.+.... -+.+|+.|.++.|.+.+....    ...+..|+|.++.+....+...+
T Consensus         7 ~~~~~G~L~k~~~~~~~W~kr~~vL~~~~L~~~k~~~~----~~~~~~i~l~~~~~~~~~~~~~~   67 (109)
T d1wgqa_           7 GSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASED----VAALESQPLLGFTVTLVKDENSE   67 (109)
T ss_dssp             SCSCEEEEEEESSTTSCCEEEEEEEETTEEEEESCTTC----SSCSEEEECSSEEEEECCCSSCS
T ss_pred             CCcEEEEEEEECCCCCCceEEEEEEeCCEEEEeccccc----cccccccccceeeeeeccccccc
Confidence            4578899988766543 378999999999988865422    22445689999998888776654

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.00  E-value=1.7  Score=32.09  Aligned_cols=58  Identities=19%  Similarity=0.217  Sum_probs=43.3

Q ss_pred             eEeeeeEEEEecCc---ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCCC
Q psy824          454 LIHQGEVIRVTSGM---WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGKG  515 (518)
Q Consensus       454 ll~~g~l~~~~~~~---~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~  515 (518)
                      .|++|.|.+.+.+.   .-+.|++.|-++.|-+.+...    ...-++.|+|..+.|..++++..
T Consensus         3 vik~GwL~k~~~~~~~~~WkkRwFvL~~~~L~yyk~~~----~~~~~~~i~l~~~~v~~~~~~~~   63 (111)
T d2dyna_           3 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDE----EKEKKYMLSVDNLKLRDVEKGFM   63 (111)
T ss_dssp             EEEEEEEEETTCCTTTTSSEEEEEEEESSEEEEESSTT----CCCEEEEEECTTEEEEEECCCST
T ss_pred             EEEEeeEEEECCCCCcCCceEEEEEEECCEEEEEcchh----hcccccccccccceeEeeccccc
Confidence            68999998865442   247899999999888887542    23467789999999988876543

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.97  E-value=1.2  Score=32.30  Aligned_cols=60  Identities=15%  Similarity=0.031  Sum_probs=42.2

Q ss_pred             ccceEeeeeEEEEecCc--ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824          451 SSQLIHQGEVIRVTSGM--WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       451 ~r~ll~~g~l~~~~~~~--~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      +...+++|.|.+.+...  .-+.+|+.|.++.|.+.+....    -..+..|+|.++.|.......
T Consensus         6 ~~~~~~~G~L~k~~~~~~k~W~kr~~vL~~~~L~~y~~~~~----~~~~~~i~l~~~~v~~~~~~~   67 (107)
T d1upqa_           6 NLPVHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSRE----ESVLGSVLLPSYNIRPDGPGA   67 (107)
T ss_dssp             TSCEEEEEEEEEECSSSSCCEEEEEEEEETTEEEEESSTTC----CSCCEEEEGGGCEEEECCSSC
T ss_pred             CCceeEEEEEEEeCCCCCCCeeEEEEEEECCEEEEecCccc----ccccceecccceEEEEeccCc
Confidence            44678999998875432  2368899999999888765422    223567999999988765443

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.64  E-value=4.5  Score=33.38  Aligned_cols=59  Identities=15%  Similarity=0.005  Sum_probs=43.3

Q ss_pred             cceEeeeeEEEEecCc-----ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824          452 SQLIHQGEVIRVTSGM-----WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       452 r~ll~~g~l~~~~~~~-----~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      ...+++|.|.+.+.+.     .-+.||++|.++.|.+.+.....    .-++.|+|..+.+..+++.+
T Consensus       102 ~~~~k~G~L~K~~~~~~~~~~~Wkkr~fvL~~~~L~yy~~~~~~----~~~~~i~L~~~~~~~~~~~~  165 (209)
T d1u5ea1         102 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDK----QQKGEFAIDGYDVRMNNTLR  165 (209)
T ss_dssp             SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCS----SCSEEEECTTCEEEECGGGC
T ss_pred             CCeeEEEEEEEecCCCCCccccceEEEEEEECCEEEEEecCCCC----ccceEEEecceeeeeccccc
Confidence            5679999998876532     23578999999999998754322    23577999999988776543

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.48  E-value=1.6  Score=31.98  Aligned_cols=59  Identities=14%  Similarity=-0.004  Sum_probs=42.6

Q ss_pred             cceEeeeeEEEEecCcc-----cceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824          452 SQLIHQGEVIRVTSGMW-----TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       452 r~ll~~g~l~~~~~~~~-----~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      ...+++|.|.+.+.++.     -+.++++|.++.|.+.+....    ...++.|+|..+.+....+..
T Consensus         7 ~~v~k~G~L~k~~~~~~~~~~~W~~r~~vL~~~~L~~y~~~~~----~~p~g~i~L~~~~~~~~~~~~   70 (111)
T d1u5fa1           7 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKD----KQQKGEFAIDGYDVRMNNTLR   70 (111)
T ss_dssp             SSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTC----SSCSEEEECTTCEEEECTTSC
T ss_pred             CCeeEEEEEEEECCCCCCCcCCceEEEEEEECCEEEeeccccc----cCcceEEEecccEEEeecccc
Confidence            35799999998865431     268999999999998875421    234578999999887665443

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.46  E-value=1.6  Score=31.40  Aligned_cols=56  Identities=13%  Similarity=0.098  Sum_probs=38.5

Q ss_pred             EeeeeEEEEecCc-ccceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcCCCC
Q psy824          455 IHQGEVIRVTSGM-WTNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLPDGK  514 (518)
Q Consensus       455 l~~g~l~~~~~~~-~~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~  514 (518)
                      .++|.|.+.+... .-+.|+++|-++.|.+.+....    ..-++.|+|..+.+....+..
T Consensus         5 ~KeG~L~K~~~~~k~Wk~R~fvL~~~~L~yy~~~~~----~~~~g~i~L~~~~~v~~~~~~   61 (100)
T d1faoa_           5 TKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMS----PEPIRILDLTECSAVQFDYSQ   61 (100)
T ss_dssp             CEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTC----SSCSEEEEGGGCCEEEEECSS
T ss_pred             cEEEEEEEeCCCCCCceEEEEEEECCEEEEEeccCC----ccCceEEechheEEEEecccc
Confidence            4678887765442 2368999999999998875422    223578999998876554443

>d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.29  E-value=2.1  Score=33.25  Aligned_cols=62  Identities=18%  Similarity=0.408  Sum_probs=44.9

Q ss_pred             ccceEeeeeEEEEecC----cc--cceEEEEEeCCeEEEEeec-cCCC---------------CceEEEEEeecCCeeEE
Q psy824          451 SSQLIHQGEVIRVTSG----MW--TNTITLFLFDHQLVYCKRD-ILKR---------------NTHVYKARLNIDTSQII  508 (518)
Q Consensus       451 ~r~ll~~g~l~~~~~~----~~--~~~~~~fLF~d~ll~~k~~-~~~~---------------~~~~~k~~i~l~~~~v~  508 (518)
                      .+.|++.+.+..+...    +.  .-+..+|+|..++|+..+. ++.+               ..+.|+..||++.++|+
T Consensus        25 mgdLl~~~~v~WLNp~~sLgk~kk~pel~~FVFK~AVV~vcke~sk~KkKl~~~~~~~~~~e~d~~rFr~mIP~~alQVR  104 (162)
T d1foea2          25 MGDLLLHTSVIWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVR  104 (162)
T ss_dssp             GGGEEEEEEEEESSCCHHHHTTCSSCEEEEEEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEEEE
T ss_pred             ccceeeecceEEecCchhhccccCCCcEEEEEecceEEEEEcccchhhhhccCccccccccccCceeEEEEeeeeeeEee
Confidence            3689999998887442    12  2378999999887776543 2111               33789999999999999


Q ss_pred             EcCC
Q psy824          509 NLPD  512 (518)
Q Consensus       509 ~~~d  512 (518)
                      +...
T Consensus       105 ~~~~  108 (162)
T d1foea2         105 ALPS  108 (162)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            8763

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.01  E-value=0.68  Score=33.59  Aligned_cols=54  Identities=11%  Similarity=0.092  Sum_probs=38.3

Q ss_pred             ceEeeeeEEEEecCcc-cceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEc
Q psy824          453 QLIHQGEVIRVTSGMW-TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINL  510 (518)
Q Consensus       453 ~ll~~g~l~~~~~~~~-~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~  510 (518)
                      .+|++|.|.+.+.... -+.||++|.++.|.+.+....    ...++.|+|..+.+...
T Consensus         2 ~vik~G~L~K~~~~~~~Wkkr~fvL~~~~l~yy~~~~~----~~~~~~i~l~~~~~~~~   56 (103)
T d1eaza_           2 AVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELE----KEPLRVIPLKEVHKVQE   56 (103)
T ss_dssp             CCSEEEEEEEECTTTCCEEEEEEEECSSEEEEESSTTC----SSCSEEEEGGGCCEEEE
T ss_pred             ceEEEEEEEEECCCCCCeeEEEEEEECCEEEEEecccC----cccceEEEccceEEeec
Confidence            3678999988765432 478999999999999875421    22456788888775443

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.97  E-value=0.78  Score=33.42  Aligned_cols=53  Identities=6%  Similarity=0.035  Sum_probs=37.9

Q ss_pred             EeeeeEEEEecCc-c-cceEEEEEeCCeEEEEeeccCCCCceEEEEEeecCCeeEEEcC
Q psy824          455 IHQGEVIRVTSGM-W-TNTITLFLFDHQLVYCKRDILKRNTHVYKARLNIDTSQIINLP  511 (518)
Q Consensus       455 l~~g~l~~~~~~~-~-~~~~~~fLF~d~ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~  511 (518)
                      |++|.|.+.+... . -+.+++.|.++.|.+.+....    ..-.+.|+|.++.+...+
T Consensus         2 ik~G~L~K~~~~~~~~W~kr~fvL~~~~L~~~~~~~~----~~~~~~i~L~~~~~~~~~   56 (102)
T d2coda1           2 VKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKE----MYSKGIIPLSAISTVRVQ   56 (102)
T ss_dssp             CEEEEEEECCSSSSSCCEEEEEEECSSEEEEEESSCC----SSCCCEEETTTEEEEEEE
T ss_pred             cEEEEEEEECCCCCCCceEEEEEEECCEEEEEeccCc----ceeEEEEEchhceeeccc
Confidence            6889998876432 2 368899999999999975432    223467899988876654