Psyllid ID: psy8269

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------
MNSVHLNSCPAFEASNDIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFASNPQSMGITLRLHAVSPEFDSRLGRSFFGSVLEVQGALSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDIVPREEVKTATGPHRRDDATKTALNPDQYLSVPMLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASLLSYVHKILVRKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLLDFLGVLFRWRLFDHAAHLGGALFGILYSKYGEQTWAHRAPVVEYWKSLKKQIGGG
cccccccccccccccccHHHHHHHHHHHHcccccccEEEEEEEEEEcEEcccccccccccccccccccccccccHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccEEEccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
cccEEcccccccccccHHHHHHHHHHHHHHHcccccEEEEHHHHHHHHHHHHHHcHccccccHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHccccHHHHHHHHccccccccEccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcHHHHHHHHcccHHHHHHccccccHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccc
mnsvhlnscpafeasndipKWRKDLRKRWnalhpgdrvyvPILFLNGVVFLawfyprlhpvlykyfasnpqsmgITLRLhavspefdsrlgrsfFGSVLEVQGALSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIdivpreevktatgphrrddatktalnpdqylsvpmllstfshqsplhIFANMFVlhsfmpssvedlgkeqFVGFYLTAGVVASLLSYVHKILvrkpglsigasGAIMAVLAHTcithpdtelgiLFVPYVRFSAEHAIQGIMLLDFLGVLFRWRLFDHAAHLGGALFGILYSKygeqtwahraPVVEYWKSLKKQIGGG
mnsvhlnscpafeasndipKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFASNPQSMGITLRLHAVSPEFDSRLGRSFFGSVLEVQGALSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIrawihtednkrrtlqrNDIAMAITKYDMFDFLIDIVPreevktatgphrrddatktalnpDQYLSVPMLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASLLSYVHKILVRKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLLDFLGVLFRWRLFDHAAHLGGALFGILYSKYGEQTWAHRAPVVEYWKSLKKQIGGG
MNSVHLNSCPAFEASNDIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFASNPQSMGITLRLHAVSPEFDSRLGRSFFGSVLEVQGALSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDIVPREEVKTATGPHRRDDATKTALNPDQYLSVPMLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASLLSYVHKILVRKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLLDFLGVLFRWRLFDHAAHLGGALFGILYSKYGEQTWAHRAPVVEYWKSLKKQIGGG
****************DIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFASNPQSMGITLRLHAVSPEFDSRLGRSFFGSVLEVQGALSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDIVPRE*********************DQYLSVPMLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASLLSYVHKILVRKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLLDFLGVLFRWRLFDHAAHLGGALFGILYSKYGEQTWAHRAPVVEYWKSL*******
*********************RKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPR*****************************************************KTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDIVPREEVKTATGPHRRDDATKTALNPDQYLSVPMLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASLLSYVHKILVRKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLLDFLGVLFRWRLFDHAAHLGGALFGILYSKYGEQTWAHRAPVVEYW**********
MNSVHLNSCPAFEASNDIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFASNPQSMGITLRLHAVSPEFDSRLGRSFFGSVLEVQGALSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDIVPREEVKTATGPHRRDDATKTALNPDQYLSVPMLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASLLSYVHKILVRKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLLDFLGVLFRWRLFDHAAHLGGALFGILYSKYGEQTWAHRAPVVEYWKSLKKQIGGG
******NSCPAFEASNDIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFASNPQSMGITLRLHAVSPEFDSRLGRSFFGSVLEVQGALSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDIVPREEVKTAT****************QYLSVPMLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASLLSYVHKILVRKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLLDFLGVLFRWRLFDHAAHLGGALFGILYSKYGEQTWAHRAPVVEYWKSLKKQ****
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MNSVHLNSCPAFEASNDIPKWRKDLRKRWNALHPGDRVYVPILFLNGVVFLAWFYPRLHPVLYKYFASNPQSMGITLRLHAVSPEFDSRLGRSFFGSVLEVQGALSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDIVPREEVKTATGPHRRDDATKTALNPDQYLSVPMLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASLLSYVHKILVRKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLLDFLGVLFRWRLFDHAAHLGGALFGILYSKYGEQTWAHRAPVVEYWKSLKKQIGGG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query386 2.2.26 [Sep-21-2011]
Q3B8P0377 Presenilins-associated rh yes N/A 0.450 0.461 0.497 3e-41
Q5XJY4377 Presenilins-associated rh yes N/A 0.450 0.461 0.497 3e-41
Q2KHV4377 Presenilins-associated rh yes N/A 0.450 0.461 0.491 4e-41
Q5R5H4379 Presenilins-associated rh yes N/A 0.450 0.459 0.491 6e-41
Q9H300379 Presenilins-associated rh yes N/A 0.450 0.459 0.491 6e-41
Q5RA23335 Nuclear transcription fac no N/A 0.318 0.367 0.656 7e-41
Q13952 458 Nuclear transcription fac no N/A 0.308 0.259 0.650 8e-41
Q62725335 Nuclear transcription fac no N/A 0.308 0.355 0.650 9e-41
P70353335 Nuclear transcription fac no N/A 0.308 0.355 0.650 9e-41
Q5E9X1335 Nuclear transcription fac no N/A 0.308 0.355 0.650 1e-40
>sp|Q3B8P0|PARL_RAT Presenilins-associated rhomboid-like protein, mitochondrial OS=Rattus norvegicus GN=Parl PE=2 SV=1 Back     alignment and function desciption
 Score =  169 bits (429), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/179 (49%), Positives = 119/179 (66%), Gaps = 5/179 (2%)

Query: 213 NP-DQYLSVPMLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASL 271
           NP  + L  PMLLSTFSH S  H+ ANM+VL SF  S V  LG+EQFV  YL+AGV+++ 
Sbjct: 197 NPASKVLCSPMLLSTFSHFSLFHMAANMYVLWSFSTSIVNILGQEQFVAVYLSAGVISNF 256

Query: 272 LSYVHKILVRKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLL 331
           +SYV K+   + G S+GASGAIM VLA  C   P+  L I+F+P   F+A +A++ I+ +
Sbjct: 257 VSYVCKVATGRYGPSLGASGAIMTVLAAVCTKIPEGRLAIIFLPVFTFTAGNALKAIIAM 316

Query: 332 DFLGVLFRWRLFDHAAHLGGALFGILYSKYG-EQTWAHRAPVVEYWKSLKK---QIGGG 386
           D  G++  W+ FDHAAHLGGALFGI Y  YG E  W +R P+V+ W  ++    + GGG
Sbjct: 317 DTAGMILGWKFFDHAAHLGGALFGIWYITYGHELIWKNREPLVKIWHEIRTNGPKKGGG 375
Required for the control of apoptosis during postnatal growth. Essential for proteolytic processing of an antiapoptotic form of OPA1 which prevents the release of mitochondrial cytochrome c in response to intrinsic apoptoptic signals.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 1EC: 0EC: 5
>sp|Q5XJY4|PARL_MOUSE Presenilins-associated rhomboid-like protein, mitochondrial OS=Mus musculus GN=Parl PE=1 SV=1 Back     alignment and function description
>sp|Q2KHV4|PARL_BOVIN Presenilins-associated rhomboid-like protein, mitochondrial OS=Bos taurus GN=PARL PE=2 SV=1 Back     alignment and function description
>sp|Q5R5H4|PARL_PONAB Presenilins-associated rhomboid-like protein, mitochondrial OS=Pongo abelii GN=PARL PE=2 SV=1 Back     alignment and function description
>sp|Q9H300|PARL_HUMAN Presenilins-associated rhomboid-like protein, mitochondrial OS=Homo sapiens GN=PARL PE=1 SV=2 Back     alignment and function description
>sp|Q5RA23|NFYC_PONAB Nuclear transcription factor Y subunit gamma OS=Pongo abelii GN=NFYC PE=2 SV=1 Back     alignment and function description
>sp|Q13952|NFYC_HUMAN Nuclear transcription factor Y subunit gamma OS=Homo sapiens GN=NFYC PE=1 SV=3 Back     alignment and function description
>sp|Q62725|NFYC_RAT Nuclear transcription factor Y subunit gamma OS=Rattus norvegicus GN=Nfyc PE=2 SV=1 Back     alignment and function description
>sp|P70353|NFYC_MOUSE Nuclear transcription factor Y subunit gamma OS=Mus musculus GN=Nfyc PE=2 SV=2 Back     alignment and function description
>sp|Q5E9X1|NFYC_BOVIN Nuclear transcription factor Y subunit gamma OS=Bos taurus GN=NFYC PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
357606391347 hypothetical protein KGM_14236 [Danaus p 0.437 0.487 0.543 7e-49
195119947356 GI19585 [Drosophila mojavensis] gi|19390 0.417 0.452 0.571 4e-48
346474066310 hypothetical protein [Amblyomma maculatu 0.443 0.551 0.514 4e-48
195401434353 GJ18325 [Drosophila virilis] gi|19414232 0.417 0.456 0.571 7e-48
195027586345 GH20399 [Drosophila grimshawi] gi|193902 0.417 0.466 0.559 2e-47
344313259208 putative rhomboid-7, partial [Plutella x 0.424 0.788 0.539 5e-47
195436535363 GK22246 [Drosophila willistoni] gi|19416 0.417 0.443 0.565 6e-47
389610057347 rhomboid-7 [Papilio xuthus] 0.422 0.469 0.542 1e-46
194755283349 GF11795 [Drosophila ananassae] gi|190621 0.417 0.461 0.546 1e-45
347968223360 AGAP002626-PA [Anopheles gambiae str. PE 0.440 0.472 0.558 1e-45
>gi|357606391|gb|EHJ65050.1| hypothetical protein KGM_14236 [Danaus plexippus] Back     alignment and taxonomy information
 Score =  201 bits (510), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 93/171 (54%), Positives = 132/171 (77%), Gaps = 2/171 (1%)

Query: 213 NPDQYL-SVPMLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASL 271
           NP   +  +PM+LSTFSH S LH+ ANM+VL+SFMP+++  LGKEQFV  YL+AGV++S 
Sbjct: 174 NPSSVVKCLPMVLSTFSHYSALHLAANMYVLYSFMPAAIASLGKEQFVAMYLSAGVISSF 233

Query: 272 LSYVHKILVRKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLL 331
            S+++K++  +PGLS+GASGAIM+VL++ C+ +PDT L I+F+P   F+A +AI+ IM +
Sbjct: 234 ASFIYKVISNQPGLSLGASGAIMSVLSYVCVQYPDTRLSIIFLPMYTFAAGNAIKVIMSV 293

Query: 332 DFLGVLFRWRLFDHAAHLGGALFGILYSKYG-EQTWAHRAPVVEYWKSLKK 381
           DF GVLF W+ FDHAAHLGGALFG+ +  +G +Q WA R  + +Y+ SL+K
Sbjct: 294 DFAGVLFGWKFFDHAAHLGGALFGMAWCYWGSQQIWAKREKLQQYYHSLRK 344

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|195119947|ref|XP_002004490.1| GI19585 [Drosophila mojavensis] gi|193909558|gb|EDW08425.1| GI19585 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|346474066|gb|AEO36877.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
>gi|195401434|ref|XP_002059318.1| GJ18325 [Drosophila virilis] gi|194142324|gb|EDW58730.1| GJ18325 [Drosophila virilis] Back     alignment and taxonomy information
>gi|195027586|ref|XP_001986663.1| GH20399 [Drosophila grimshawi] gi|193902663|gb|EDW01530.1| GH20399 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|344313259|gb|AEN04489.1| putative rhomboid-7, partial [Plutella xylostella] Back     alignment and taxonomy information
>gi|195436535|ref|XP_002066223.1| GK22246 [Drosophila willistoni] gi|194162308|gb|EDW77209.1| GK22246 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|389610057|dbj|BAM18640.1| rhomboid-7 [Papilio xuthus] Back     alignment and taxonomy information
>gi|194755283|ref|XP_001959921.1| GF11795 [Drosophila ananassae] gi|190621219|gb|EDV36743.1| GF11795 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|347968223|ref|XP_312303.4| AGAP002626-PA [Anopheles gambiae str. PEST] gi|333468105|gb|EAA08059.4| AGAP002626-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
FB|FBgn0033672380 rho-7 "rhomboid-7" [Drosophila 0.417 0.423 0.521 1.3e-55
RGD|1306191377 Parl "presenilin associated, r 0.450 0.461 0.497 4.2e-51
UNIPROTKB|Q3B8P0377 Parl "Presenilins-associated r 0.450 0.461 0.497 4.2e-51
MGI|MGI:1277152377 Parl "presenilin associated, r 0.450 0.461 0.497 2.9e-50
UNIPROTKB|Q9H300379 PARL "Presenilins-associated r 0.450 0.459 0.491 1.6e-49
UNIPROTKB|Q2KHV4377 PARL "Presenilins-associated r 0.450 0.461 0.491 3.3e-49
UNIPROTKB|E2RQQ1379 PARL "Uncharacterized protein" 0.450 0.459 0.491 3.3e-49
ZFIN|ZDB-GENE-050327-8383 parla "presenilin associated, 0.430 0.433 0.467 5.3e-47
UNIPROTKB|F1P184273 PARL "Uncharacterized protein" 0.437 0.619 0.491 5.3e-45
UNIPROTKB|F1NUI6285 PARL "Uncharacterized protein" 0.437 0.592 0.479 2.9e-44
FB|FBgn0033672 rho-7 "rhomboid-7" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 464 (168.4 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
 Identities = 84/161 (52%), Positives = 118/161 (73%)

Query:   221 PMLLSTFSHQSPLHIFANMFVLHSFMPSSVEDLGKEQFVGFYLTAGVVASLLSYVHKILV 280
             PM LSTFSH S +H+FANM+V+HSF  ++   LGKEQF+  YL+AGV +SL+S ++K   
Sbjct:   216 PMFLSTFSHYSAMHLFANMYVMHSFANAAAVSLGKEQFLAVYLSAGVFSSLMSVLYKAAT 275

Query:   281 RKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIMLLDFLGVLFRW 340
              + G+S+GASGAIM +LA+ C  +PDT+L ILF+P + FSA   I+ +M +DF GV+  W
Sbjct:   276 SQAGMSLGASGAIMTLLAYVCTQYPDTQLSILFLPALTFSAGAGIKVLMGIDFAGVVMGW 335

Query:   341 RLFDHAAHLGGALFGILYSKYGEQTWAHRAPVVEYWKSLKK 381
             + FDHAAHLGGA+FGI ++ YG Q WA R  ++ Y+  L++
Sbjct:   336 KFFDHAAHLGGAMFGIFWATYGAQIWAKRIGLLNYYHDLRR 376
GO:0004252 "serine-type endopeptidase activity" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA
GO:0008053 "mitochondrial fusion" evidence=IMP
RGD|1306191 Parl "presenilin associated, rhomboid-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q3B8P0 Parl "Presenilins-associated rhomboid-like protein, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1277152 Parl "presenilin associated, rhomboid-like" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H300 PARL "Presenilins-associated rhomboid-like protein, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KHV4 PARL "Presenilins-associated rhomboid-like protein, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RQQ1 PARL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050327-8 parla "presenilin associated, rhomboid-like a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P184 PARL "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NUI6 PARL "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.210.766
3rd Layer3.4.21.1050.824

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
COG5208286 COG5208, HAP5, CCAAT-binding factor, subunit C [Tr 2e-40
pfam0080865 pfam00808, CBFD_NFYB_HMF, Histone-like transcripti 5e-21
pfam01694146 pfam01694, Rhomboid, Rhomboid family 4e-20
COG0705228 COG0705, COG0705, Membrane associated serine prote 6e-13
pfam0012575 pfam00125, Histone, Core histone H2A/H2B/H3/H4 1e-09
COG5247113 COG5247, BUR6, Class 2 transcription repressor NC2 3e-08
COG203691 COG2036, HHT1, Histones H3 and H4 [Chromatin struc 7e-06
COG5262132 COG5262, HTA1, Histone H2A [Chromatin structure an 0.001
>gnl|CDD|227533 COG5208, HAP5, CCAAT-binding factor, subunit C [Transcription] Back     alignment and domain information 
 Score =  144 bits (364), Expect = 2e-40
 Identities = 59/85 (69%), Positives = 71/85 (83%)

Query: 109 DLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTL 168
            LK   LPLARIKK+MK D+ VKMISAEAP+LF+K  E+FI ELT+RAWI+ E+NKRRTL
Sbjct: 104 LLKDHNLPLARIKKVMKTDEDVKMISAEAPVLFAKITEIFIEELTMRAWINAEENKRRTL 163

Query: 169 QRNDIAMAITKYDMFDFLIDIVPRE 193
           Q++DIA A+ K +MFDFLIDIVPR 
Sbjct: 164 QKSDIAAAVKKSEMFDFLIDIVPRN 188

Length = 286
>gnl|CDD|201453 pfam00808, CBFD_NFYB_HMF, Histone-like transcription factor (CBF/NF-Y) and archaeal histone Back     alignment and domain information
>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family Back     alignment and domain information
>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4 Back     alignment and domain information
>gnl|CDD|227572 COG5247, BUR6, Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription] Back     alignment and domain information
>gnl|CDD|224947 COG2036, HHT1, Histones H3 and H4 [Chromatin structure and dynamics] Back     alignment and domain information
>gnl|CDD|227587 COG5262, HTA1, Histone H2A [Chromatin structure and dynamics] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 386
PRK10907276 intramembrane serine protease GlpG; Provisional 99.93
PTZ00101278 rhomboid-1 protease; Provisional 99.93
COG0705228 Membrane associated serine protease [Amino acid tr 99.91
KOG2980|consensus310 99.89
COG5208286 HAP5 CCAAT-binding factor, subunit C [Transcriptio 99.88
PF01694145 Rhomboid: Rhomboid family; InterPro: IPR022764 In 99.84
KOG2289|consensus316 99.83
KOG1657|consensus236 99.72
KOG2632|consensus258 99.64
KOG2290|consensus652 99.58
PF0080865 CBFD_NFYB_HMF: Histone-like transcription factor ( 99.18
KOG1659|consensus224 99.04
COG5247113 BUR6 Class 2 transcription repressor NC2, alpha su 98.96
PF0855199 DUF1751: Eukaryotic integral membrane protein (DUF 98.42
KOG1658|consensus162 98.32
PF04511197 DER1: Der1-like family; InterPro: IPR007599 The en 98.23
KOG2890|consensus326 98.06
KOG0858|consensus239 97.82
COG203691 HHT1 Histones H3 and H4 [Chromatin structure and d 96.17
cd00074115 H2A Histone 2A; H2A is a subunit of the nucleosome 95.78
PF0012575 Histone: Core histone H2A/H2B/H3/H4 histone h2a si 95.46
KOG0869|consensus168 95.21
smart0080365 TAF TATA box binding protein associated factor. TA 95.19
cd0007685 H4 Histone H4, one of the four histones, along wit 95.17
PLN00035103 histone H4; Provisional 94.81
PTZ00015102 histone H4; Provisional 94.24
COG5262132 HTA1 Histone H2A [Chromatin structure and dynamics 93.8
COG5291313 Predicted membrane protein [Function unknown] 93.46
smart0041774 H4 Histone H4. 93.22
cd0798172 TAF12 TATA Binding Protein (TBP) Associated Factor 92.0
smart00414106 H2A Histone 2A. 89.96
cd0804885 TAF11 TATA Binding Protein (TBP) Associated Factor 89.9
KOG4463|consensus 323 89.57
KOG0870|consensus172 87.42
PTZ00017134 histone H2A; Provisional 86.5
PF0941572 CENP-X: CENP-S associating Centromere protein X; I 85.87
KOG1756|consensus131 84.73
PF1315085 DUF3989: Protein of unknown function (DUF3989) 83.69
PLN00154136 histone H2A; Provisional 83.14
KOG0871|consensus156 81.23
>PRK10907 intramembrane serine protease GlpG; Provisional Back     alignment and domain information 
Probab=99.93  E-value=2.4e-25  Score=215.26  Aligned_cols=177  Identities=12%  Similarity=0.170  Sum_probs=126.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccCC-CCccccceeecccccCChhHHHHHHHHHHHHHHH
Q psy8269         170 RNDIAMAITKYDMFDFLIDIVPREEVKTATGPHRRDDATKTALNP-DQYLSVPMLLSTFSHQSPLHIFANMFVLHSFMPS  248 (386)
Q Consensus       170 ~~DIa~aI~~i~i~~FL~~ivp~~~~~~~~~p~~~~~~~~~~l~p-~~g~~wrllTs~FlH~~~~HLl~Nm~~L~~fG~~  248 (386)
                      ..+++..++.+|+.+|+.+.+.+.......        ..+..++ .++|+||++|++|+|.|+.|+++||+.+|.+|..
T Consensus        93 ~~p~T~~li~i~i~vf~l~~~~~~~~~~~~--------l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~  164 (276)
T PRK10907         93 AGPLTLGVMIACVVVFILMQILGDQTVMLW--------LAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGA  164 (276)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhccHHHHHH--------HhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            456888999999999999877553211000        0011111 3679999999999999999999999999999999


Q ss_pred             HHhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcceechHHHHHHHHHHHHHHcCCCcceeEechhhhHHHHHHHHHH
Q psy8269         249 SVEDLGKEQFVGFYLTAGVVASLLSYVHKILVRKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGI  328 (386)
Q Consensus       249 lE~~~G~~rfl~lyl~sgv~gsl~s~l~~~~~~~~~~~vGASGaI~Gll~a~~~~~p~~~~~l~fip~~~~~a~~~~~~~  328 (386)
                      +|+.+|+++++.+|++++++|+++++++.     ....+|+||+|||++++......+.+.....+|.   ....++.++
T Consensus       165 iE~~~G~~~~l~l~l~s~i~~~~~~~~~~-----~~~~gGaSGvVygL~g~~~~~~~~~p~~~~~lp~---~~~~f~llw  236 (276)
T PRK10907        165 VEKRLGSGKLIVITLISALLSGWVQSKFS-----GPWFGGLSGVVYALMGYVWLRGERDPQSGIYLPR---GLIAFALLW  236 (276)
T ss_pred             HHHHHChHHHHHHHHHHHHHHHHHHHHHc-----cchhhHHHHHHHHHHHHHHHHhccccccchhhhH---HHHHHHHHH
Confidence            99999999999999999999999988765     3467899999999999876543222221111221   111122222


Q ss_pred             HHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhh
Q psy8269         329 MLLDFLGVLFRWRLFDHAAHLGGALFGILYSKYGEQ  364 (386)
Q Consensus       329 l~~~~~~~~~~~~~i~~~aHLgG~L~G~l~~~~~~~  364 (386)
                      +.+...+. + ..+|++.||+||+++|+++++...+
T Consensus       237 l~~g~~~~-~-g~~Ian~AHlgGli~Gll~g~~~~~  270 (276)
T PRK10907        237 LVAGYFDL-F-GMSIANAAHVAGLAVGLAMAFWDTR  270 (276)
T ss_pred             HHHHHHHc-c-CcccHHHHHHHHHHHHHHHHHHhhh
Confidence            22222221 2 3689999999999999999987654

>PTZ00101 rhomboid-1 protease; Provisional Back     alignment and domain information
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2980|consensus Back     alignment and domain information
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription] Back     alignment and domain information
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2289|consensus Back     alignment and domain information
>KOG1657|consensus Back     alignment and domain information
>KOG2632|consensus Back     alignment and domain information
>KOG2290|consensus Back     alignment and domain information
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin Back     alignment and domain information
>KOG1659|consensus Back     alignment and domain information
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription] Back     alignment and domain information
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins Back     alignment and domain information
>KOG1658|consensus Back     alignment and domain information
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins Back     alignment and domain information
>KOG2890|consensus Back     alignment and domain information
>KOG0858|consensus Back     alignment and domain information
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics] Back     alignment and domain information
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome Back     alignment and domain information
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ] Back     alignment and domain information
>KOG0869|consensus Back     alignment and domain information
>smart00803 TAF TATA box binding protein associated factor Back     alignment and domain information
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution Back     alignment and domain information
>PLN00035 histone H4; Provisional Back     alignment and domain information
>PTZ00015 histone H4; Provisional Back     alignment and domain information
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics] Back     alignment and domain information
>COG5291 Predicted membrane protein [Function unknown] Back     alignment and domain information
>smart00417 H4 Histone H4 Back     alignment and domain information
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>smart00414 H2A Histone 2A Back     alignment and domain information
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>KOG4463|consensus Back     alignment and domain information
>KOG0870|consensus Back     alignment and domain information
>PTZ00017 histone H2A; Provisional Back     alignment and domain information
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex Back     alignment and domain information
>KOG1756|consensus Back     alignment and domain information
>PF13150 DUF3989: Protein of unknown function (DUF3989) Back     alignment and domain information
>PLN00154 histone H2A; Provisional Back     alignment and domain information
>KOG0871|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
1n1j_B97 Crystal Structure Of The Nf-YbNF-Yc Histone Pair Le 1e-37
4awl_C94 The Nf-y Transcription Factor Is Structurally And F 3e-37
4g91_C119 Ccaat-Binding Complex From Aspergillus Nidulans Len 3e-30
1jfi_A98 Crystal Structure Of The Nc2-Tbp-Dna Ternary Comple 1e-04
2byk_A140 Histone Fold Heterodimer Of The Chromatin Accessibi 3e-04
>pdb|1N1J|B Chain B, Crystal Structure Of The Nf-YbNF-Yc Histone Pair Length = 97 Back     alignment and structure 
Iteration: 1

 Score =  154 bits (388), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/97 (76%), Positives = 85/97 (87%)
Query: 96  GSVLEVQGALSMLDLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIR 155
           GS +E    L++ D + Q LPLARIKKIMKLD+ VKMISAEAP+LF+KAA++FI ELT+R
Sbjct: 1   GSHMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLR 60
Query: 156 AWIHTEDNKRRTLQRNDIAMAITKYDMFDFLIDIVPR 192
           AWIHTEDNKRRTLQRNDIAMAITK+D FDFLIDIVPR
Sbjct: 61  AWIHTEDNKRRTLQRNDIAMAITKFDQFDFLIDIVPR 97
>pdb|4AWL|C Chain C, The Nf-y Transcription Factor Is Structurally And Functionally A Sequence Specific Histone Length = 94 Back     alignment and structure
>pdb|4G91|C Chain C, Ccaat-Binding Complex From Aspergillus Nidulans Length = 119 Back     alignment and structure
>pdb|1JFI|A Chain A, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex Length = 98 Back     alignment and structure
>pdb|2BYK|A Chain A, Histone Fold Heterodimer Of The Chromatin Accessibility Complex Length = 140 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
1n1j_B97 NF-YC; histone-like PAIR, DNA binding protein; 1.6 3e-36
2byk_A140 Chrac-16; nucleosome sliding, histone fold, DNA-bi 1e-35
1jfi_A98 Transcription regulator NC2 alpha chain; histone, 1e-31
2byk_B128 Chrac-14; nucleosome sliding, histone fold, DNA-bi 3e-22
1n1j_A93 NF-YB; histone-like PAIR, DNA binding protein; 1.6 7e-19
2xov_A181 Rhomboid protease GLPG; membrane protein, hydrolas 8e-16
2nr9_A196 Protein GLPG homolog; intramembrane peptidase, rho 1e-14
1jfi_B179 DR1 protein, transcription regulator NC2 beta chai 2e-12
1b67_A68 Protein (histone HMFA); DNA binding protein; 1.48A 1e-11
1ku5_A70 HPHA, archaeal histon; histone fold, DNA binding p 5e-11
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 Length = 97 Back     alignment and structure
 Score =  126 bits (318), Expect = 3e-36
 Identities = 70/84 (83%), Positives = 78/84 (92%)

Query: 109 DLKTQALPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTL 168
           D + Q LPLARIKKIMKLD+ VKMISAEAP+LF+KAA++FI ELT+RAWIHTEDNKRRTL
Sbjct: 14  DFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTL 73

Query: 169 QRNDIAMAITKYDMFDFLIDIVPR 192
           QRNDIAMAITK+D FDFLIDIVPR
Sbjct: 74  QRNDIAMAITKFDQFDFLIDIVPR 97
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A Length = 140 Back     alignment and structure
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 Length = 98 Back     alignment and structure
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B Length = 128 Back     alignment and structure
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 Length = 93 Back     alignment and structure
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181 Back     alignment and structure
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196 Back     alignment and structure
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 Length = 179 Back     alignment and structure
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A Length = 68 Back     alignment and structure
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2 Length = 70 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
2xov_A181 Rhomboid protease GLPG; membrane protein, hydrolas 99.94
2nr9_A196 Protein GLPG homolog; intramembrane peptidase, rho 99.93
4g92_C119 HAPE; transcription factor, nucleosome, minor groo 99.72
1n1j_B97 NF-YC; histone-like PAIR, DNA binding protein; 1.6 99.65
2byk_A140 Chrac-16; nucleosome sliding, histone fold, DNA-bi 99.54
1jfi_A98 Transcription regulator NC2 alpha chain; histone, 99.51
2byk_B128 Chrac-14; nucleosome sliding, histone fold, DNA-bi 99.08
1n1j_A93 NF-YB; histone-like PAIR, DNA binding protein; 1.6 98.97
1b67_A68 Protein (histone HMFA); DNA binding protein; 1.48A 98.54
3b0c_W76 CENP-W, centromere protein W; histone fold, DNA bi 98.39
1jfi_B179 DR1 protein, transcription regulator NC2 beta chai 98.09
1ku5_A70 HPHA, archaeal histon; histone fold, DNA binding p 97.49
1id3_C131 Histone H2A.1; nucleosome core particle, chromatin 97.46
2nqb_C123 Histone H2A; nucleosome, NCP, chromatin, structura 97.3
1tzy_A129 Histone H2A-IV; histone-fold, tetramer-dimer-dimer 97.29
1f1e_A154 Histone fold protein; archaeal histone protein, DN 97.19
2f8n_K149 Histone H2A type 1; nucleosome, NCP, macroh2A, his 97.18
1tzy_D103 Histone H4-VI; histone-fold, tetramer-dimer-dimer, 97.13
1id3_B102 Histone H4; nucleosome core particle, chromatin, p 97.12
2f8n_G120 Core histone macro-H2A.1; nucleosome, NCP, macroh2 97.1
2yfw_B103 Histone H4, H4; cell cycle, kinetochore, centromer 97.1
2hue_C84 Histone H4; mini beta sheet, elongated beta sandwh 97.06
1f66_C128 Histone H2A.Z; nucleosome, chromatin, histone vari 96.98
3b0c_T111 CENP-T, centromere protein T; histone fold, DNA bi 96.87
1f1e_A154 Histone fold protein; archaeal histone protein, DN 96.59
2jss_A192 Chimera of histone H2B.1 and histone H2A.Z; histon 96.22
1taf_B70 TFIID TBP associated factor 62; transcription init 90.69
2ly8_A121 Budding yeast chaperone SCM3; centromere protein, 86.3
3b0b_C81 CENP-X, centromere protein X; histone fold, DNA bi 82.06
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Back     alignment and structure
Probab=99.94  E-value=5.1e-26  Score=206.10  Aligned_cols=171  Identities=11%  Similarity=0.093  Sum_probs=129.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccCC---CCccccceeecccccCChhHHHHHHHHHHHHHH
Q psy8269         171 NDIAMAITKYDMFDFLIDIVPREEVKTATGPHRRDDATKTALNP---DQYLSVPMLLSTFSHQSPLHIFANMFVLHSFMP  247 (386)
Q Consensus       171 ~DIa~aI~~i~i~~FL~~ivp~~~~~~~~~p~~~~~~~~~~l~p---~~g~~wrllTs~FlH~~~~HLl~Nm~~L~~fG~  247 (386)
                      .+++.+++.+|+.+|+.+.+...+..          .....++|   .++|+||++|++|+|.|+.|+++||+.++.+|.
T Consensus         4 ~pvt~~li~~~v~vf~~~~~~~~~~~----------~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~   73 (181)
T 2xov_A            4 GPVTWVMMIACVVVFIAMQILGDQEV----------MLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGG   73 (181)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCHHHH----------HHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHhCcHHH----------HHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            45788999999999999876543100          01122333   367999999999999999999999999999999


Q ss_pred             HHHhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcceechHHHHHHHHHHHHH---HcCCCcceeEechhhhHHHHHH
Q psy8269         248 SSVEDLGKEQFVGFYLTAGVVASLLSYVHKILVRKPGLSIGASGAIMAVLAHTCI---THPDTELGILFVPYVRFSAEHA  324 (386)
Q Consensus       248 ~lE~~~G~~rfl~lyl~sgv~gsl~s~l~~~~~~~~~~~vGASGaI~Gll~a~~~---~~p~~~~~l~fip~~~~~a~~~  324 (386)
                      .+|+.+|+.||+.+|+.++++++++++++.   +  ..++||||+++|+++++++   ..|+.+..   +|   .+....
T Consensus        74 ~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~---~--~~~vGaSGai~gl~g~~~~~~~~~p~~~~~---l~---~~~~~~  142 (181)
T 2xov_A           74 AVEKRLGSGKLIVITLISALLSGYVQQKFS---G--PWFGGLSGVVYALMGYVWLRGERDPQSGIY---LQ---RGLIIF  142 (181)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHH---C--SCCCCSHHHHHHHHHHHHHHHHHCGGGSCC---CC---HHHHHH
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHHhc---C--CCceeHHHHHHHHHHHHHHHHhhCcCceee---eH---HHHHHH
Confidence            999999999999999999999999998876   2  2389999999999998764   55655432   22   122222


Q ss_pred             HHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhh
Q psy8269         325 IQGIMLLDFLGVLFRWRLFDHAAHLGGALFGILYSKYGEQ  364 (386)
Q Consensus       325 ~~~~l~~~~~~~~~~~~~i~~~aHLgG~L~G~l~~~~~~~  364 (386)
                      ....++..+...  ..+++|+.||+||+++|+++++..+|
T Consensus       143 ~~~~~~~~~~~~--~~~~v~~~aHlgG~l~G~l~~~~~~~  180 (181)
T 2xov_A          143 ALIWIVAGWFDL--FGMSMANGAHIAGLAVGLAMAFVDSL  180 (181)
T ss_dssp             HHHHHHHHHTTS--SCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--ccccchHHHHHHHHHHHHHHHHHHhc
Confidence            222333333221  13689999999999999999988654
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Back     alignment and structure
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C* Back     alignment and structure
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A Back     alignment and structure
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B Back     alignment and structure
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A Back     alignment and structure
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W Back     alignment and structure
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2 Back     alignment and structure
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 Back     alignment and structure
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C* Back     alignment and structure
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ... Back     alignment and structure
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2 Back     alignment and structure
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1 Back     alignment and structure
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ... Back     alignment and structure
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 Back     alignment and structure
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C Back     alignment and structure
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140} Back     alignment and structure
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B Back     alignment and structure
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1 Back     alignment and structure
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T Back     alignment and structure
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2 Back     alignment and structure
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1 Back     alignment and structure
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3 Back     alignment and structure
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 386
d1n1jb_78 a.22.1.3 (B:) Nuclear transcription factor Y subun 5e-30
d2byka172 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophil 5e-27
d1jfib_135 a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain 5e-25
d2bykb189 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila 9e-24
d1n1ja_87 a.22.1.3 (A:) Nuclear transcription factor Y subun 4e-23
d1jfia_66 a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chai 6e-22
d1htaa_68 a.22.1.2 (A:) Archaeal histone {Archaeon Methanoth 9e-20
d1ku5a_66 a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococc 1e-19
d1f1ea_151 a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy 3e-19
d1f1ea_151 a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy 7e-07
d3b45a1180 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 1e-10
d2nr9a1189 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu 1e-09
d1q9ca_172 a.22.1.3 (A:) Histone domain of Son of sevenless p 1e-06
d2huec182 a.22.1.1 (C:20-101) Histone H4 {African clawed fro 1e-04
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]} Length = 78 Back     information, alignment and structure

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 5e-30
 Identities = 68/78 (87%), Positives = 75/78 (96%)

Query: 115 LPLARIKKIMKLDDGVKMISAEAPMLFSKAAELFIHELTIRAWIHTEDNKRRTLQRNDIA 174
           LPLARIKKIMKLD+ VKMISAEAP+LF+KAA++FI ELT+RAWIHTEDNKRRTLQRNDIA
Sbjct: 1   LPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIA 60

Query: 175 MAITKYDMFDFLIDIVPR 192
           MAITK+D FDFLIDIVPR
Sbjct: 61  MAITKFDQFDFLIDIVPR 78
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 72 Back     information, alignment and structure
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]} Length = 135 Back     information, alignment and structure
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 89 Back     information, alignment and structure
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Back     information, alignment and structure
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]} Length = 68 Back     information, alignment and structure
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]} Length = 66 Back     information, alignment and structure
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151 Back     information, alignment and structure
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151 Back     information, alignment and structure
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180 Back     information, alignment and structure
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189 Back     information, alignment and structure
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Length = 172 Back     information, alignment and structure
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 82 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
d2nr9a1189 GlpG homolog HI0618 {Haemophilus influenzae [TaxId 99.92
d3b45a1180 GlpG {Escherichia coli [TaxId: 562]} 99.91
d1n1jb_78 Nuclear transcription factor Y subunit gamma (Nf-Y 99.57
d2byka172 Chrac-16 {Fruit fly (Drosophila melanogaster) [Tax 99.43
d1jfia_66 Negative cofactor 2, NC2, alpha chain {Human (Homo 99.39
d1n1ja_87 Nuclear transcription factor Y subunit beta (Nf-Yb 99.26
d1jfib_135 Negative cofactor 2, NC2, beta chain {Human (Homo 99.13
d2bykb189 Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax 99.07
d1ku5a_66 Archaeal histone {Archaeon (Pyrococcus horikoshii) 99.06
d1htaa_68 Archaeal histone {Archaeon Methanothermus fervidus 98.82
d1f1ea_151 Archaeal histone {Archaeon Methanopyrus kandleri [ 98.38
d2huec182 Histone H4 {African clawed frog (Xenopus laevis) [ 95.92
d1q9ca_172 Histone domain of Son of sevenless protein {Human 95.46
d1f1ea_151 Archaeal histone {Archaeon Methanopyrus kandleri [ 95.2
d1f66c_103 Histone H2A {Human (Homo sapiens), variant H2A.Z [ 91.36
d1u35c1106 macro-H2A.1, histone domain {Human (Homo sapiens) 89.03
d1tzya_106 Histone H2A {Chicken (Gallus gallus), erythrocytes 88.8
d1tzyc_95 Histone H3 {Chicken (Gallus gallus), erythrocytes 84.84
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.92  E-value=9.6e-26  Score=203.07  Aligned_cols=178  Identities=17%  Similarity=0.194  Sum_probs=130.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhhcccccccccCCCCccccccccccCCCCccccceeecccccCChhHHHHHHHHHHHHHHHH
Q psy8269         170 RNDIAMAITKYDMFDFLIDIVPREEVKTATGPHRRDDATKTALNPDQYLSVPMLLSTFSHQSPLHIFANMFVLHSFMPSS  249 (386)
Q Consensus       170 ~~DIa~aI~~i~i~~FL~~ivp~~~~~~~~~p~~~~~~~~~~l~p~~g~~wrllTs~FlH~~~~HLl~Nm~~L~~fG~~l  249 (386)
                      ..+++..++.+|+.+|+.+..+........       .........++|+||++|++|+|.|+.|+++||+.++.+|..+
T Consensus         5 ~~pvt~~i~~~~~~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~~   77 (189)
T d2nr9a1           5 QGKITLILTALCVLIYIAQQLGFEDDIMYL-------MHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMI   77 (189)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHhccHHHHHH-------HHccccccccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            457888999999999998887543211000       0001122346799999999999999999999999999999999


Q ss_pred             HhhhchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcceechHHHHHHHHHHHHHHcCCCcceeEechhhhHHHHHHHHHHH
Q psy8269         250 VEDLGKEQFVGFYLTAGVVASLLSYVHKILVRKPGLSIGASGAIMAVLAHTCITHPDTELGILFVPYVRFSAEHAIQGIM  329 (386)
Q Consensus       250 E~~~G~~rfl~lyl~sgv~gsl~s~l~~~~~~~~~~~vGASGaI~Gll~a~~~~~p~~~~~l~fip~~~~~a~~~~~~~l  329 (386)
                      |+.+|+.+++.+|++++++|++++.+..     +.+.+||||+++|++++.+...+..+..... +....   ..+...+
T Consensus        78 E~~~G~~~~~~~~~~~~~~~~l~~~~~~-----~~~~vGaSG~v~gl~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~  148 (189)
T d2nr9a1          78 ERTFGSVKLLMLYVVASAITGYVQNYVS-----GPAFFGLSGVVYAVLGYVFIRDKLNHHLFDL-PEGFF---TMLLVGI  148 (189)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHH-----CSCCCCSHHHHHHHHHHHHHHHHSSTTSCCC-CCSST---TTTTTTT
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHhcC-----CCCcccchHHHHHHHHHHHHHHHHhhhHhcc-HHHHH---HHHHHHH
Confidence            9999999999999999999999988776     4568999999999999888777665543221 11000   0111112


Q ss_pred             HHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhhh
Q psy8269         330 LLDFLGVLFRWRLFDHAAHLGGALFGILYSKYGEQ  364 (386)
Q Consensus       330 ~~~~~~~~~~~~~i~~~aHLgG~L~G~l~~~~~~~  364 (386)
                      .+.+... ...+++|+.||++|+++|++++++.+|
T Consensus       149 ~~~~~~~-~~~~~v~~~aHl~G~l~G~~~g~~~~~  182 (189)
T d2nr9a1         149 ALGFISP-LFGVEMGNAAHISGLIVGLIWGFIDSK  182 (189)
T ss_dssp             THHHHSC-SSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh-ccCCChHHHHHHHHHHHHHHHHHHHHc
Confidence            2222222 223689999999999999999998765
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]} Back     information, alignment and structure
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]} Back     information, alignment and structure
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Back     information, alignment and structure
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Back     information, alignment and structure
>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant H2A.Z [TaxId: 9606]} Back     information, alignment and structure
>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Back     information, alignment and structure
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Back     information, alignment and structure