Psyllid ID: psy8285
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 507 | 2.2.26 [Sep-21-2011] | |||||||
| Q5H7C0 | 499 | Cell division cycle prote | yes | N/A | 0.804 | 0.817 | 0.367 | 8e-71 | |
| Q12834 | 499 | Cell division cycle prote | yes | N/A | 0.788 | 0.801 | 0.368 | 4e-70 | |
| Q62623 | 499 | Cell division cycle prote | yes | N/A | 0.773 | 0.785 | 0.374 | 3e-69 | |
| Q9JJ66 | 499 | Cell division cycle prote | yes | N/A | 0.769 | 0.781 | 0.366 | 8e-69 | |
| Q54MZ3 | 499 | Anaphase-promoting comple | yes | N/A | 0.670 | 0.681 | 0.402 | 1e-68 | |
| P78972 | 488 | WD repeat-containing prot | yes | N/A | 0.757 | 0.786 | 0.319 | 3e-55 | |
| O13286 | 556 | WD repeat-containing prot | no | N/A | 0.621 | 0.566 | 0.341 | 5e-53 | |
| Q54KM3 | 754 | Anaphase-promoting comple | no | N/A | 0.633 | 0.425 | 0.334 | 7e-53 | |
| Q8L3Z8 | 483 | Protein FIZZY-RELATED 2 O | no | N/A | 0.627 | 0.658 | 0.349 | 1e-51 | |
| O94423 | 421 | Meiotic fizzy-related pro | no | N/A | 0.737 | 0.888 | 0.317 | 4e-50 |
| >sp|Q5H7C0|CDC20_PIG Cell division cycle protein 20 homolog OS=Sus scrofa GN=CDC20 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 268 bits (684), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 163/443 (36%), Positives = 244/443 (55%), Gaps = 35/443 (7%)
Query: 66 SRSKMVNT------DRYVVDRSSYDSLCSHYLL----QQANDETISYREQKKRRHLSFLL 115
S SKM T DRY+ RS+ + +LL Q N +T + +E +K L+ L
Sbjct: 63 SNSKMQTTPSKPGGDRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWALN--L 120
Query: 116 HGFEIDRKKVLNQS-KRTVSPTQFLRTLG-------------KLPRKVKAKPERILEAPS 161
+GF+++ K+L S K +P + L K R + + P+RIL+AP
Sbjct: 121 NGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPE 180
Query: 162 IINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKT-QLL-VEYPTYDNAYISCVAWKPR 219
I ND+Y + +DW + LAVALD SVY W+ + QLL +E P Y+S VAW
Sbjct: 181 IRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQP---GDYVSSVAWIKE 237
Query: 220 TTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVR 279
LAV + E + LW Q+++ ++ + +H +V ++CWN +LS G+ G+I H+DVR
Sbjct: 238 GNYLAVGTSSAE-VQLWDVQQQKRLRNMTSHSARVGSLCWNSYILSSGSRSGHIHHHDVR 296
Query: 280 THSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAK-RPQVNNQCHLS 337
+ ++ VCGL+W+P+GR+LASG N N V +W + P H
Sbjct: 297 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG 356
Query: 338 AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVT 397
AVKA+AWCPW+ +LATGGG D+ +R+WN +G V SQV SILWS Y+EL++
Sbjct: 357 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELIS 416
Query: 398 SHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRD 457
HG L +W+YP + + ELK H R+LS +SPD VA+A+ADET+ +W CF D
Sbjct: 417 GHGFAQNQLVIWKYPTMAKVAELKGHTARVLSLTMSPDGATVASAAADETLRLWRCFELD 476
Query: 458 KKRKARQVGSGSSLEFAILKQPV 480
R+ R+ S+ + +++ Q +
Sbjct: 477 PARR-REREKASAAKSSLIHQGI 498
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Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation. Sus scrofa (taxid: 9823) |
| >sp|Q12834|CDC20_HUMAN Cell division cycle protein 20 homolog OS=Homo sapiens GN=CDC20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 266 bits (679), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 158/429 (36%), Positives = 238/429 (55%), Gaps = 29/429 (6%)
Query: 74 DRYVVDRSSYDSLCSHYLL----QQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQS 129
DRY+ RS+ + +LL Q N +T + +E +K L+ L+GF+++ K+L S
Sbjct: 77 DRYIPHRSAAQMEVASFLLSKENQPENSQTPTKKEHQKAWALN--LNGFDVEEAKILRLS 134
Query: 130 -KRTVSPTQFLRTLG-------------KLPRKVKAKPERILEAPSIINDFYTSGLDWGY 175
K +P + L K R + + P+RIL+AP I ND+Y + +DW
Sbjct: 135 GKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSS 194
Query: 176 HDTLAVALDTSVYTWNTKTNKT-QLL-VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYI 233
+ LAVALD SVY W+ + QLL +E P YIS VAW LAV + E +
Sbjct: 195 GNVLAVALDNSVYLWSASSGDILQLLQMEQP---GEYISSVAWIKEGNYLAVGTSSAE-V 250
Query: 234 DLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGD 293
LW Q+++ ++ + +H +V ++ WN +LS G+ G+I H+DVR + ++
Sbjct: 251 QLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 310
Query: 294 VVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAK-RPQVNNQCHLSAVKAIAWCPWEPTL 351
VCGL+W+P+GR+LASG N N V +W + P H AVKA+AWCPW+ +
Sbjct: 311 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 370
Query: 352 LATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEY 411
LATGGG D+ +R+WN +G V SQV SILWS Y+EL++ HG L +W+Y
Sbjct: 371 LATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY 430
Query: 412 PRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSL 471
P + + ELK H R+LS +SPD VA+A+ADET+ +W CF D R+ R+ S+
Sbjct: 431 PTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR-REREKASAA 489
Query: 472 EFAILKQPV 480
+ +++ Q +
Sbjct: 490 KSSLIHQGI 498
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Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation. Homo sapiens (taxid: 9606) |
| >sp|Q62623|CDC20_RAT Cell division cycle protein 20 homolog OS=Rattus norvegicus GN=Cdc20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 263 bits (671), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 156/417 (37%), Positives = 228/417 (54%), Gaps = 25/417 (5%)
Query: 74 DRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFL--LHGFEIDRKKVLNQS-K 130
DRY+ RS+ + +LL + N KK ++ L+GF+++ K+L S K
Sbjct: 77 DRYIPQRSASQMEVASFLLSKENQPEDGGTPTKKEHQKAWARNLNGFDVEEAKILRLSGK 136
Query: 131 RTVSPTQFLRTLG-------------KLPRKVKAKPERILEAPSIINDFYTSGLDWGYHD 177
+P + L K R + + P+RIL+AP I ND+Y + +DW +
Sbjct: 137 PQNAPEGYQNRLKVLYSQKATPGSSRKACRYIPSLPDRILDAPEIRNDYYLNLVDWSSGN 196
Query: 178 TLAVALDTSVYTWNTKTNKT-QLL-VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDL 235
LAVALD SVY WN + QLL +E P YIS VAW LAV + E + L
Sbjct: 197 VLAVALDNSVYLWNAGSGDILQLLQMEQP---GDYISSVAWIKEGNYLAVGTSNAE-VQL 252
Query: 236 WHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVV 295
W Q+++ ++ + +H +V ++ WN +LS G+ G+I H+DVR + ++ V
Sbjct: 253 WDVQQQKRLRNMTSHSARVSSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 312
Query: 296 CGLKWSPNGRYLASGSN-NTVKIWDFRQLDAK-RPQVNNQCHLSAVKAIAWCPWEPTLLA 353
CGL+W+P+GR+LASG N N V +W ++ P H AVKA+AWCPW+ +LA
Sbjct: 313 CGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWVPLQTFTQHQGAVKAVAWCPWQSNILA 372
Query: 354 TGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413
TGGG D+ +R+WN +G V SQV SILWS Y+EL++ HG L +W+YP
Sbjct: 373 TGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 432
Query: 414 LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKK-RKARQVGSGS 469
+ + ELK H R+LS +SPD VA+A+ADET+ +W CF D R+ R+ S S
Sbjct: 433 MAKVAELKGHTARVLSLTMSPDGATVASAAADETLRLWRCFELDPALRREREKASTS 489
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Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation (By similarity). Interacts with NEK2. Rattus norvegicus (taxid: 10116) |
| >sp|Q9JJ66|CDC20_MOUSE Cell division cycle protein 20 homolog OS=Mus musculus GN=Cdc20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 261 bits (667), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 152/415 (36%), Positives = 231/415 (55%), Gaps = 25/415 (6%)
Query: 74 DRYVVDRSSYDSLCSHYLLQQAN--DETISYREQKKRRHLSFLLHGFEIDRKKVLNQS-K 130
DR++ RS+ + +LL + N ++ + +++ ++ S L+GF+++ K+L S K
Sbjct: 77 DRFIPQRSASQMEVASFLLSKENQPEDRGTPTKKEHQKAWSLNLNGFDVEEAKILRLSGK 136
Query: 131 RTVSPTQFLRTLG-------------KLPRKVKAKPERILEAPSIINDFYTSGLDWGYHD 177
+P + L K R + + P+RIL+AP I ND+Y + +DW +
Sbjct: 137 PQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGN 196
Query: 178 TLAVALDTSVYTWNTKTNKT-QLL-VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDL 235
LAVALD SVY WN + QLL +E P YIS VAW LAV + E + L
Sbjct: 197 VLAVALDNSVYLWNAGSGDILQLLQMEQP---GDYISSVAWIKEGNYLAVGTSNAE-VQL 252
Query: 236 WHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVV 295
W Q+++ ++ + +H +V ++ WN +LS G+ G+I H+DVR + ++ V
Sbjct: 253 WDVQQQKRLRNMTSHSARVSSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 312
Query: 296 CGLKWSPNGRYLASGSN-NTVKIWDFRQLDAK-RPQVNNQCHLSAVKAIAWCPWEPTLLA 353
CGL+W+P+GR+LASG N N V +W ++ P H AVKA+AWCPW+ +LA
Sbjct: 313 CGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWAPLQTFTQHQGAVKAVAWCPWQSNILA 372
Query: 354 TGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413
TGGG D+ +R+WN +G V SQV SILWS Y+EL++ HG L +W+YP
Sbjct: 373 TGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 432
Query: 414 LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKK-RKARQVGS 467
+ + ELK H R+L +SPD VA+A+ADET+ +W CF D R+ R+ S
Sbjct: 433 MAKVAELKGHTARVLGLTMSPDGATVASAAADETLRLWRCFEMDPALRREREKAS 487
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Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation. Mus musculus (taxid: 10090) |
| >sp|Q54MZ3|CDC20_DICDI Anaphase-promoting complex subunit cdc20 OS=Dictyostelium discoideum GN=cdc20 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 261 bits (666), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 141/350 (40%), Positives = 205/350 (58%), Gaps = 10/350 (2%)
Query: 129 SKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVY 188
S+ V T ++L K R++ +PERIL+AP I++D+Y + LDW + +A+ L +VY
Sbjct: 145 SQNQVGSTPTDQSLKKQFRQIPQQPERILDAPDIVDDYYLNLLDWSSQNVIAIPLGQTVY 204
Query: 189 TWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAV-TNTCTEYIDLWHEQEERLIQKL 247
WN T++ Q L + D+ YI+ + W LAV TN+CT I LW + +++L
Sbjct: 205 LWNATTSEIQRLFQVEQQDD-YITSLQWTKDGNYLAVGTNSCT--IQLWDVAHTKKVREL 261
Query: 248 RTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYL 307
R H +V A+ WN +LS G+ NI ++DVR + + + ++ VCGLKWS +G L
Sbjct: 262 RGHAGRVGALAWNDYILSSGSSDTNIFNHDVRVQNHHVSTLSGHSQEVCGLKWSHDGGQL 321
Query: 308 ASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLW 366
ASG N N + IWD + + P + H +AV+A+AWCP++P LLATGGG D+T+R W
Sbjct: 322 ASGGNDNIINIWDINSENFETPAHTFEQHTAAVRALAWCPFQPNLLATGGGAADRTIRFW 381
Query: 367 NSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQER 426
N++ G V T SQV SI WS YRELV+SHG L +W+YP + EL H R
Sbjct: 382 NTITGVCLNTVDTMSQVCSIQWSTTYRELVSSHGYSQNQLCVWKYPSMVKCAELTGHTSR 441
Query: 427 ILSAVLSPDQTCVAAASADETISIWNCFPRDKK-----RKARQVGSGSSL 471
L +SPD V +ASADET+ W F ++ K RK+++V GS +
Sbjct: 442 ALHTAISPDGETVVSASADETLRFWRVFEKENKLPTANRKSKEVSDGSMM 491
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Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. Dictyostelium discoideum (taxid: 44689) |
| >sp|P78972|SLP1_SCHPO WD repeat-containing protein slp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=slp1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (550), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 132/413 (31%), Positives = 213/413 (51%), Gaps = 29/413 (7%)
Query: 60 EQYRESSRSKMVNTDRYVVDRSSYDSLCSHYLLQQANDETISYREQKKR--------RHL 111
+ R +SRS DR++ R + + ++ ++D Y E R L
Sbjct: 79 NKSRPASRS-----DRFIPSRPN---TANAFVNSISSDVPFDYSESVAEACGFDLNTRVL 130
Query: 112 SFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSIINDFYTSGL 171
+F L E KK ++ + P + + T K R+ PER+L+AP II+D+Y + L
Sbjct: 131 AFKLDAPEA--KKPVDLRTQHNRPQRPVVTPAK--RRFNTTPERVLDAPGIIDDYYLNLL 186
Query: 172 DWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTE 231
DW + +AVAL+ +VY WN + L E T ++ Y++ V W + L+V
Sbjct: 187 DWSNLNVVAVALERNVYVWNADSGSVSALAE--TDESTYVASVKWSHDGSFLSV-GLGNG 243
Query: 232 YIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITRE 291
+D++ + + ++ + H +V + WN ++LS G+ G I H+DVR + +
Sbjct: 244 LVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGH 303
Query: 292 GDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPT 350
VCGL W +G LASG N N V+IWD R + P+ H +AVKA+AWCPW+
Sbjct: 304 SSEVCGLAWRSDGLQLASGGNDNVVQIWDAR---SSIPKFTKTNHNAAVKAVAWCPWQSN 360
Query: 351 LLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWE 410
LLATGGG D+ + WN+ G V SQVTS++WS +E++++HG D +L +W
Sbjct: 361 LLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWS 420
Query: 411 YPRLHLIEELKI--HQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRK 461
Y L +++ I H R+L + LSPD ++ A++DE + W + D ++
Sbjct: 421 YSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKR 473
|
Required for mad2-dependent spindle checkpoint activation. Promotes ubiquitin-dependent degradation of cdc13 by the anaphase promoting complex/cyclosome (APC/C). Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|O13286|SRW1_SCHPO WD repeat-containing protein srw1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srw1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (532), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 110/322 (34%), Positives = 179/322 (55%), Gaps = 7/322 (2%)
Query: 147 RKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTY 206
R++ + P R+L+AP + DFY + LDWG + LAVAL + VY W+ +++ ++ + Y
Sbjct: 232 RELPSIPYRVLDAPGLAGDFYLNLLDWGQCNMLAVALASRVYLWSGISSEVTVMHNF--Y 289
Query: 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSC 266
++ + W R T LAV T +++W + + + H +V A+ WN ++LS
Sbjct: 290 PTDTVTSLRWVQRGTHLAV-GTHNGSVEIWDAATCKKTRTMSGHTERVGALSWNDHVLSS 348
Query: 267 GTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDA 325
G +ILH DVR Y +T VCGL+W+ N LASG N N + +WD +
Sbjct: 349 GGRDNHILHRDVRAPEHYFRVLTAHRQEVCGLEWNSNENLLASGGNDNALMVWDKFE--- 405
Query: 326 KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTS 385
++P + H++AVKAI W P + +LA+GGG D+T++LWN+ G ++ T SQV +
Sbjct: 406 EKPLYSFHNHIAAVKAITWSPHQRGILASGGGTADRTIKLWNTQRGSMLHNIDTGSQVCN 465
Query: 386 ILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASAD 445
+LWS+Q E +++HG + + +W YP + + LK H +R+L +SP+ + +AD
Sbjct: 466 LLWSKQTNEFISTHGFMENEVALWNYPSVSRVGTLKGHTDRVLYLAMSPNGENIVTGAAD 525
Query: 446 ETISIWNCFPRDKKRKARQVGS 467
ET+ W F K A + S
Sbjct: 526 ETLRFWKLFDSKSKHSASTMSS 547
|
Has a role in cell differentiation and cell cycling by negatively regulating cig2 and cdc12-associated cdc2. Down-regulates the level of cdc13, particularly in a nitrogen deprived environment. Regulator of cell cycle G1 phase progression. Prevents onset of mitosis during the pre-Start G1 period. Required for degradation of cdc13 mitotic cyclin B during G1 arrest but not during mitotic exit. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q54KM3|CDH1_DICDI Anaphase-promoting complex subunit cdh1 OS=Dictyostelium discoideum GN=cdh1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 208 bits (530), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 118/353 (33%), Positives = 178/353 (50%), Gaps = 32/353 (9%)
Query: 137 QFLRTLGKLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNK 196
+ L + K RK+ P +IL+AP I +DFY + +DW H+ LAV LDTSVY WN T++
Sbjct: 385 KLLSSPRKPQRKISKTPIKILDAPMIKDDFYLNLIDWSSHNILAVGLDTSVYLWNATTSQ 444
Query: 197 TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIA 256
L E + +S V W R + +W +++ I++L+ H +V A
Sbjct: 445 VSKLCEMES--GQPVSSVGWIQRGGIHLAIGGTDGVVSIWDVNKKKKIRELQGHNTRVNA 502
Query: 257 MCWNGNLLSCGTIGGNILHYDVRTHS-DYPTAITREGDVVCGLKWSPNGRYLASGSN-NT 314
+ WN ++LS G ILH+DVR S +Y + +CGLKWSP+G+ LASG N N
Sbjct: 503 LAWNNHILSSGGKDKVILHHDVRDCSNNYTNRLVGHRHEICGLKWSPDGQQLASGGNDNL 562
Query: 315 VKIWDFRQ----------------------------LDAKRPQVNNQCHLSAVKAIAWCP 346
+ +WD + +P + H +AVKAIAW P
Sbjct: 563 LNVWDHSMTQQPQQQHQPPPPPPSSNTSSISQQQQQQNTSKPLYQFKFHYAAVKAIAWSP 622
Query: 347 WEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSL 406
+ LLA+GGG D+ +R WN+ G+ + T SQV ++ WS+ ELV++HG +
Sbjct: 623 HQRGLLASGGGTHDKCIRFWNTTTGQSIQSIDTGSQVCNLAWSKNINELVSTHGYSQNQI 682
Query: 407 KMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKK 459
+W YP + + L H R+L +SPD V + D ++ WN FP +K+
Sbjct: 683 TVWNYPTMTPVTTLTGHTMRVLYLAVSPDGQTVCTGAGDNSLRFWNLFPSNKE 735
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q8L3Z8|FZR2_ARATH Protein FIZZY-RELATED 2 OS=Arabidopsis thaliana GN=FZR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (520), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/326 (34%), Positives = 173/326 (53%), Gaps = 8/326 (2%)
Query: 144 KLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEY 203
K PRKV P ++L+AP++ +DFY + +DW + LAV L VY WN ++K L +
Sbjct: 155 KAPRKVPRSPYKVLDAPALQDDFYLNLVDWSAQNVLAVGLGNCVYLWNACSSKVTKLCDL 214
Query: 204 PTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNL 263
D+ + V W R T LAV T T + +W + + + H +V A+ W ++
Sbjct: 215 GAEDS--VCSVGWALRGTHLAV-GTSTGKVQIWDASRCKRTRTMEGHRLRVGALAWGSSV 271
Query: 264 LSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQ 322
LS G+ +IL D+R D+ + + VCGLKWS + R LASG N N + +W+
Sbjct: 272 LSSGSRDKSILQRDIRCQEDHVSKLAGHKSEVCGLKWSYDNRELASGGNDNRLFVWN--- 328
Query: 323 LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQ 382
+ +P + H +AVKAIAW P LLA+GGG D+ +R WN+ + T SQ
Sbjct: 329 QHSTQPVLKYSEHTAAVKAIAWSPHVHGLLASGGGTADRCIRFWNTTTNTHLSSIDTCSQ 388
Query: 383 VTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAA 442
V ++ WS+ ELV++HG + +W+YP + I L H R+L +SPD +
Sbjct: 389 VCNLAWSKNVNELVSTHGYSQNQIIVWKYPTMSKIATLTGHTYRVLYLAVSPDGQTIVTG 448
Query: 443 SADETISIWNCFPRDKKRKA-RQVGS 467
+ DET+ WN FP K + ++GS
Sbjct: 449 AGDETLRFWNVFPSPKSQNTDSEIGS 474
|
Activator protein that regulates the ubiquitin ligase activity and substrate specificity of the anaphase promoting complex/cyclosome (APC/C). Necessary and sufficient for endoreduplication and correct cell expansion. Arabidopsis thaliana (taxid: 3702) |
| >sp|O94423|MFR1_SCHPO Meiotic fizzy-related protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mfr1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (506), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 123/388 (31%), Positives = 196/388 (50%), Gaps = 14/388 (3%)
Query: 78 VDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPT- 136
+ R + L QA+ Y + KR+ +L DRK + S +SP
Sbjct: 41 IQRQFMELLSMELFGSQASRSRAFYYGEDKRKIEKKMLD--TPDRK---SYSLSPISPQS 95
Query: 137 -QFLRTLGKLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTN 195
LR K R P +IL+AP + NDFY + LDWG + LAV L +S+Y W+ +
Sbjct: 96 QDMLRQPQKPKRAFPKTPYKILDAPYLKNDFYLNLLDWGQSNVLAVGLASSIYLWSAASG 155
Query: 196 KTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVI 255
K L ++ + +++ V W + T LAV T + I +W + + ++ L+ H +V
Sbjct: 156 KVVQLHDFGATN--HVTSVLWTGKGTQLAV-GTDSGVIYIWDIESTKSVRSLKGHSERVA 212
Query: 256 AMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NT 314
A+ WN N L+ G ILH+D+R + +CGL+W + LASG N N
Sbjct: 213 ALAWNDNTLTSGGKDEVILHHDLRAPGCCAEMMKVHEQEICGLQWDRSLGQLASGGNDNN 272
Query: 315 VKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK 374
+ +WD+R + RP + H +AVKAI W P + +LA+GGG D+ + + N++ G+ +
Sbjct: 273 LFVWDYR---SSRPLHKFEEHTAAVKAIGWSPHQRGILASGGGTIDRCLTIHNTLTGRLQ 329
Query: 375 CHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSP 434
+ T SQV ++ WS+ E+VT+HG + +W+YP L I L H R+L +SP
Sbjct: 330 NKLDTGSQVCNMAWSKTSNEIVTTHGFAKNQVSLWKYPSLKNIANLTAHTNRVLYLSMSP 389
Query: 435 DQTCVAAASADETISIWNCFPRDKKRKA 462
D + + DET+ W F + K ++
Sbjct: 390 DGQSIVTGAGDETLRFWKLFNKKPKEES 417
|
Meiosis-specific activator of the anaphase promoting complex/cyclosome (APC/C). Involved in cdc13 degradation. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 507 | ||||||
| 148232740 | 506 | cell division cycle 20 homolog [Xenopus | 0.788 | 0.790 | 0.373 | 4e-72 | |
| 45360545 | 507 | cell division cycle 20 [Xenopus (Siluran | 0.785 | 0.785 | 0.376 | 3e-71 | |
| 326430667 | 451 | Cdc20 [Salpingoeca sp. ATCC 50818] | 0.773 | 0.869 | 0.364 | 1e-70 | |
| 432104523 | 500 | Cell division cycle protein 20 like prot | 0.785 | 0.796 | 0.365 | 2e-70 | |
| 126305835 | 499 | PREDICTED: cell division cycle protein 2 | 0.769 | 0.781 | 0.384 | 3e-70 | |
| 28277337 | 492 | LOC398044 protein, partial [Xenopus laev | 0.761 | 0.784 | 0.374 | 3e-70 | |
| 395530358 | 499 | PREDICTED: cell division cycle protein 2 | 0.773 | 0.785 | 0.380 | 4e-70 | |
| 148232481 | 507 | cell division cycle 20 [Xenopus laevis] | 0.785 | 0.785 | 0.371 | 5e-70 | |
| 3298595 | 507 | fizzy1 [Xenopus laevis] | 0.788 | 0.788 | 0.366 | 1e-69 | |
| 215490108 | 505 | cell division cycle 20 [Acyrthosiphon pi | 0.844 | 0.847 | 0.351 | 1e-69 |
| >gi|148232740|ref|NP_001079443.1| cell division cycle 20 homolog [Xenopus laevis] gi|27503900|gb|AAH42288.1| Cdc20 protein [Xenopus laevis] | Back alignment and taxonomy information |
|---|
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 158/423 (37%), Positives = 242/423 (57%), Gaps = 23/423 (5%)
Query: 74 DRYVVDRSSYDSLCSHYLLQQANDET-ISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRT 132
DR++ +RS+ + +LL + N+ T S ++++++ + L+GF+++ K+L R
Sbjct: 85 DRFIPNRSAMQMDVASFLLSKENEPTDTSPTKKEQQKAWAMNLNGFDMEEAKILRLGGRP 144
Query: 133 V-SPTQFLRTLG-------------KLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDT 178
+P + L K R + + P+R+L+AP I ND+Y + +DW +
Sbjct: 145 QNAPEGYQNNLKVLYSQKNTPGSSKKTGRYIPSMPDRVLDAPDIRNDYYLNLIDWSSQNA 204
Query: 179 LAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238
LAVAL+ SVY WN T LL++ + YIS V+W LAV + +E + LW
Sbjct: 205 LAVALNDSVYLWNYATGDIILLLQMENSEE-YISSVSWIKEGHFLAVGTSNSE-VQLWDV 262
Query: 239 QEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGL 298
Q+++ ++ + +H +V A+ WN ++LS G+ G+I H+DVR + + +T VCGL
Sbjct: 263 QQQKRLRNMISHSSRVGALSWNNHILSSGSRTGHIHHHDVRVAQHHVSTLTGHTQEVCGL 322
Query: 299 KWSPNGRYLASGSN-NTVKIWDFRQLDAKR--PQVNNQCHLSAVKAIAWCPWEPTLLATG 355
KWSP+GRYLASG+N N V +W Q D+ P H AVKA+AWCPW+ +LATG
Sbjct: 323 KWSPDGRYLASGANDNLVNVWPCVQGDSGEFSPVQTFTQHQGAVKAVAWCPWQSNVLATG 382
Query: 356 GGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415
GG D+ +R+WN +G V T SQV SILWS Y+EL++ HG L +W+YP +
Sbjct: 383 GGTSDRHIRIWNVCSGTCLNSVDTHSQVCSILWSANYKELISGHGFAQNQLVLWKYPTMT 442
Query: 416 LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF---PRDKKRKARQVGSGSSLE 472
+ ELK H R+L+ +SPD VA+A+ADET+ +W CF P KK K + S S +
Sbjct: 443 RVSELKGHTARVLNLAMSPDGCTVASAAADETLRLWKCFEVDPVTKKEKEKSRSSKSIIH 502
Query: 473 FAI 475
+I
Sbjct: 503 QSI 505
|
Source: Xenopus laevis Species: Xenopus laevis Genus: Xenopus Family: Pipidae Order: Anura Class: Amphibia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|45360545|ref|NP_988945.1| cell division cycle 20 [Xenopus (Silurana) tropicalis] gi|38174723|gb|AAH61363.1| cell division cycle 20 homolog [Xenopus (Silurana) tropicalis] gi|89268646|emb|CAJ83291.1| CDC20 cell division cycle 20 homolog (S. cerevisiae) [Xenopus (Silurana) tropicalis] | Back alignment and taxonomy information |
|---|
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 160/425 (37%), Positives = 242/425 (56%), Gaps = 27/425 (6%)
Query: 74 DRYVVDRSSYDSLCSHYLLQQAN---DETISYREQKKRRHLSFLLHGFEIDRKKVLNQSK 130
DR++ +RS+ + +LL + N D + + +EQ+K ++ L+GF+++ K+L
Sbjct: 86 DRFIPNRSAMQMDVASFLLCKENEPADTSPTKKEQQKAWAMN--LNGFDMEEAKILRLGG 143
Query: 131 RTV-SPTQFLRTLG-------------KLPRKVKAKPERILEAPSIINDFYTSGLDWGYH 176
R +P + L K R + + P+R+L+AP I ND+Y + +DW
Sbjct: 144 RPQNAPEGYQNNLKVLYSQKTTPGSSKKTGRYIPSMPDRVLDAPDIRNDYYLNLIDWSSQ 203
Query: 177 DTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLW 236
+ LAVAL+ SVY WN T LL++ + YIS V+W LAV + +E + LW
Sbjct: 204 NFLAVALNDSVYLWNYATGDIILLLQM-EHSEEYISSVSWIKEGNYLAVGTSNSE-VQLW 261
Query: 237 HEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVC 296
Q+++ ++ + +H +V A+ WN ++LS G+ G+I H+DVR + + +T VC
Sbjct: 262 DVQQQKRLRNMTSHSSRVGALSWNNHILSSGSRTGHIHHHDVRVAQHHVSTLTGHTQEVC 321
Query: 297 GLKWSPNGRYLASGSN-NTVKIWDFRQLDAKR--PQVNNQCHLSAVKAIAWCPWEPTLLA 353
GLKWSP+GRYLASG+N N V +W Q D+ P H AVKA+AWCPW+ +LA
Sbjct: 322 GLKWSPDGRYLASGANDNLVNVWPCVQGDSGEFSPVQTFTQHQGAVKAVAWCPWQSNVLA 381
Query: 354 TGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413
TGGG D+ +R+WN +G V T SQV SILWS Y+EL++ HG L +W+YP
Sbjct: 382 TGGGTSDRHIRIWNVCSGTCLNSVDTHSQVCSILWSTNYKELISGHGFAQNQLVLWKYPT 441
Query: 414 LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF---PRDKKRKARQVGSGSS 470
+ + ELK H R+L+ +SPD VA+A+ADET+ +W CF P KK K + S S
Sbjct: 442 MTRVTELKGHTARVLNLAISPDGCTVASAAADETLRLWKCFEVDPVTKKEKEKARSSKSI 501
Query: 471 LEFAI 475
+ +I
Sbjct: 502 IHQSI 506
|
Source: Xenopus (Silurana) tropicalis Species: Xenopus (Silurana) tropicalis Genus: Xenopus Family: Pipidae Order: Anura Class: Amphibia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|326430667|gb|EGD76237.1| Cdc20 [Salpingoeca sp. ATCC 50818] | Back alignment and taxonomy information |
|---|
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 153/420 (36%), Positives = 222/420 (52%), Gaps = 28/420 (6%)
Query: 59 SEQYRESSRSKMVNTDRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLL--- 115
S R + R V DR++ DRS+ + SHY + D+ + ++ S +L
Sbjct: 34 SSTSRMTPRKDRVRGDRFIPDRSAMNMEASHYKMLSGADDENTQQDAAGMPGSSKILAFK 93
Query: 116 -------HGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSIINDFYT 168
GF+ D + + QS+ P K R + PERIL+AP ++ +FY
Sbjct: 94 QKAPKPKEGFQSDLRVMYTQSRAAAKPK-------KTARFIPQAPERILDAPDLLANFYV 146
Query: 169 SGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA--YISCVAWKPRTTDLAVT 226
+ LDW + L VAL+ + Y WN + E +NA YI+ V+W LAV
Sbjct: 147 NPLDWSNENMLCVALNDTAYLWNASNGS---ITELCHLENAGDYIASVSWAQDGAHLAV- 202
Query: 227 NTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPT 286
T + + +W +++ ++ + H +V A+ WN ++LS G+ G IL+ DVR
Sbjct: 203 GTNSGVVQIWDVTKQKQVRDMSGHGARVGALDWNNHILSSGSQRGIILNSDVRVRDHVMQ 262
Query: 287 AITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWC 345
A+ VCGLKWSPNGR LASG N N V IW DA + H + VKA+AWC
Sbjct: 263 ALENHAGEVCGLKWSPNGRMLASGGNDNLVNIWS----DAGEVRHTLTHHQAGVKALAWC 318
Query: 346 PWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCS 405
PW LLATGGG D T+R WNS G + T SQ+TS+LWS++Y+E++ HG
Sbjct: 319 PWTHNLLATGGGTADGTIRFWNSTTGNCTGTIDTKSQITSLLWSKEYQEIIAGHGHNHNG 378
Query: 406 LKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQV 465
L +W+YP L + ELK H +R+++ +SPD V +AS DE++ W CF D KRKAR++
Sbjct: 379 LSIWKYPSLDQVAELKGHTDRVVAMAMSPDGEMVVSASGDESLRFWKCFQSDPKRKARKM 438
|
Source: Salpingoeca sp. ATCC 50818 Species: Salpingoeca sp. ATCC 50818 Genus: Salpingoeca Family: Salpingoecidae Order: Choanoflagellida Class: Phylum: Superkingdom: Eukaryota |
| >gi|432104523|gb|ELK31141.1| Cell division cycle protein 20 like protein [Myotis davidii] | Back alignment and taxonomy information |
|---|
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/432 (36%), Positives = 238/432 (55%), Gaps = 34/432 (7%)
Query: 74 DRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHL---SFLLHGFEIDRKKVLNQSK 130
DRY+ RS+ + +LL + N + + + K+ H + L+GF+++ K+L S
Sbjct: 77 DRYIPHRSATQMEVASFLLSKENSHSENSQTPTKKEHQKAWALNLNGFDVEEAKILRLSG 136
Query: 131 RT------------------VSPTQFLRTLGKLPRKVKAKPERILEAPSIINDFYTSGLD 172
+ +P RT R + + P+RIL+AP I ND+Y + +D
Sbjct: 137 KPQKVPEGYENRLKVLYSQKATPGSSKRTC----RYIPSLPDRILDAPEIRNDYYLNLVD 192
Query: 173 WGYHDTLAVALDTSVYTWNTKTNKT-QLL-VEYPTYDNAYISCVAWKPRTTDLAVTNTCT 230
W + LAVALD SVY W+ T QLL +E P Y+S V+W LAV +
Sbjct: 193 WSSGNVLAVALDNSVYLWSASTGDILQLLQMEQP---GDYVSSVSWIKEGNYLAVGTSSA 249
Query: 231 EYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITR 290
E + LW Q+++ ++ + +H +V A+CWN +LS G+ G+I H+DVR + ++
Sbjct: 250 E-VQLWDVQQQKRLRNMTSHSARVGALCWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG 308
Query: 291 EGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAK-RPQVNNQCHLSAVKAIAWCPWE 348
VCGL+WSP+GR+LASG N N V +W L+A P H AVKA+AWCPW+
Sbjct: 309 HSQEVCGLRWSPDGRHLASGGNDNLVNVWPSAALEAGWVPLQTFTQHQGAVKAVAWCPWQ 368
Query: 349 PTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKM 408
+LATGGG D+ +R+WN +G V SQV SILWS Y+EL++ HG L +
Sbjct: 369 SNILATGGGTSDRHIRIWNVCSGACLNAVDAHSQVCSILWSSHYKELISGHGFAQNQLVI 428
Query: 409 WEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSG 468
W+YP + + ELK H R+LS +SPD VA+A+ADET+ +W CF D R+ R+
Sbjct: 429 WKYPTMVKVAELKGHTARVLSLAMSPDGATVASAAADETLRMWRCFELDPARR-REREKA 487
Query: 469 SSLEFAILKQPV 480
S+ + +++ Q +
Sbjct: 488 SATKSSLIHQGI 499
|
Source: Myotis davidii Species: Myotis davidii Genus: Myotis Family: Vespertilionidae Order: Chiroptera Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|126305835|ref|XP_001363768.1| PREDICTED: cell division cycle protein 20 homolog [Monodelphis domestica] | Back alignment and taxonomy information |
|---|
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 161/419 (38%), Positives = 237/419 (56%), Gaps = 29/419 (6%)
Query: 74 DRYVVDRSSYDSLCSHYLLQQAN---DETISYREQKKRRHLSFLLHGFEIDRKKVLNQS- 129
DRY+ RS+ + +LL + N + T + +EQ+K S L+GF+++ K+L S
Sbjct: 77 DRYIPHRSASQMEVASFLLSKENQPANHTPTRKEQQKA--WSLNLNGFDVEEAKILRLSG 134
Query: 130 KRTVSPTQF---LRTL-----------GKLPRKVKAKPERILEAPSIINDFYTSGLDWGY 175
K +P + LR L K R + + P+RIL+AP I ND+Y + +DW
Sbjct: 135 KPQNAPEGYQNSLRVLYSQKATPGSSRKKTCRYIPSLPDRILDAPEIRNDYYLNLMDWSC 194
Query: 176 HDTLAVALDTSVYTWNTKTNKT-QLL-VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYI 233
+ LAVALDTSVY W+ + + QLL E P Y+S VAW LAV + E +
Sbjct: 195 GNVLAVALDTSVYLWSAGSGEILQLLQTERP---GDYVSSVAWIKEGNYLAVGTSSAE-V 250
Query: 234 DLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGD 293
LW Q+++ ++ + +H +V A+ WN +LS G+ G++ H+DVR + ++
Sbjct: 251 QLWDVQQQKRLRNMSSHTARVGALSWNSYILSSGSRSGHVHHHDVRVAEHHVATLSGHSQ 310
Query: 294 VVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAK-RPQVNNQCHLSAVKAIAWCPWEPTL 351
VCGL+WSP+GRYLASG N N V +W D P H+ AVKA+AWCPW+ +
Sbjct: 311 EVCGLRWSPDGRYLASGGNDNLVNVWPSAPGDGGWAPLQTFTQHVGAVKAVAWCPWQSNV 370
Query: 352 LATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEY 411
LATGGG D+ +R+WN +G V SQV +ILWS Y+EL++ HG L +W+Y
Sbjct: 371 LATGGGTSDRHIRIWNVCSGACLSAVDAQSQVCAILWSPHYKELISGHGFAQNQLVIWKY 430
Query: 412 PRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDK-KRKARQVGSGS 469
P + + ELK H R+LS +SPD VA+A+ADET+ +W CF D +R+ R+ S +
Sbjct: 431 PSMAKVAELKGHTARVLSLTMSPDGCTVASAAADETLRLWRCFELDPVQRREREKASAA 489
|
Source: Monodelphis domestica Species: Monodelphis domestica Genus: Monodelphis Family: Didelphidae Order: Didelphimorphia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|28277337|gb|AAH45242.1| LOC398044 protein, partial [Xenopus laevis] | Back alignment and taxonomy information |
|---|
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/409 (37%), Positives = 236/409 (57%), Gaps = 23/409 (5%)
Query: 74 DRYVVDRSSYDSLCSHYLLQQANDET-ISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRT 132
DR++ +RS+ + +LL + ND S ++++++ + L+GF+++ K+L R
Sbjct: 86 DRFIPNRSAMQMDVASFLLCKENDPVDTSPTKKEQQKAWAMNLNGFDMEEAKILRLGGRP 145
Query: 133 V-SPTQFLRTLG-------------KLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDT 178
+P + L K R + + P+R+L+AP I ND+Y + +DW +
Sbjct: 146 QNAPEGYQNNLKVLYSQKTTPGSSKKTGRYIPSMPDRVLDAPDIRNDYYLNLIDWSSQNA 205
Query: 179 LAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238
LAVAL+ SVY WN T LL++ + YIS V+W LAV ++ E + LW
Sbjct: 206 LAVALNDSVYLWNYATGDIILLLQMENSEE-YISSVSWIKEGNYLAVGSSNAE-VQLWDV 263
Query: 239 QEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGL 298
Q+++ ++ + +H +V A+ WN ++LS G+ G+I H+DVR + + + VCGL
Sbjct: 264 QQQKRLRNMISHSSRVGALNWNNHILSSGSRTGHIHHHDVRVAQHHVSTLAGHTQEVCGL 323
Query: 299 KWSPNGRYLASGSN-NTVKIWDFRQLDAKR--PQVNNQCHLSAVKAIAWCPWEPTLLATG 355
KWSP+GRYLASG+N N V +W Q D+ P H +AVKA+AWCPW+ +LATG
Sbjct: 324 KWSPDGRYLASGANDNLVNVWPCVQGDSGEFSPVQTFTQHQAAVKAVAWCPWQSNVLATG 383
Query: 356 GGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415
GG D+ +R+WN +G V T SQV SI+WS Y+EL++ HG L +W+YP +
Sbjct: 384 GGTSDRHLRIWNVCSGTCLNSVDTHSQVCSIVWSTNYKELISGHGFAQNQLVLWKYPTMT 443
Query: 416 LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF---PRDKKRK 461
+ ELK H R+L+ +SPD VA+A+ADET+ +W CF P KK+K
Sbjct: 444 RVTELKGHTARVLNLAMSPDGCTVASAAADETLRLWKCFEVDPVTKKKK 492
|
Source: Xenopus laevis Species: Xenopus laevis Genus: Xenopus Family: Pipidae Order: Anura Class: Amphibia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|395530358|ref|XP_003767263.1| PREDICTED: cell division cycle protein 20 homolog [Sarcophilus harrisii] | Back alignment and taxonomy information |
|---|
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 161/423 (38%), Positives = 238/423 (56%), Gaps = 31/423 (7%)
Query: 74 DRYVVDRSSYDSLCSHYLLQQAN---DETISYREQKKRRHLSFLLHGFEIDRKKVLNQS- 129
DRY+ RS+ + +LL + N + T + +EQ+K S L+GF+++ K+L S
Sbjct: 77 DRYIPHRSTSQMEVASFLLSKENQPSNHTPTRKEQQKA--WSLNLNGFDVEEAKILRLSG 134
Query: 130 KRTVSPTQF---LRTL-----------GKLPRKVKAKPERILEAPSIINDFYTSGLDWGY 175
K +P + LR L K R + + P+RIL+AP I ND+Y + +DW
Sbjct: 135 KPQNAPEGYQNSLRVLYSQKATPGSSRKKTCRYIPSLPDRILDAPEIRNDYYLNLMDWSC 194
Query: 176 HDTLAVALDTSVYTWNTKTNKT-QLL-VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYI 233
+ LAVALDTSVY W+ + + QLL E P Y+S VAW LAV + E +
Sbjct: 195 GNVLAVALDTSVYLWSAGSGEILQLLQTERP---GDYVSSVAWIKEGNYLAVGTSSAE-V 250
Query: 234 DLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGD 293
LW Q+++ ++ + +H +V A+ WN +LS G+ G++ H+DVR + ++
Sbjct: 251 QLWDVQQQKRLRNMSSHSARVGALAWNSYILSSGSRSGHVHHHDVRVAEHHVATLSGHSQ 310
Query: 294 VVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAK-RPQVNNQCHLSAVKAIAWCPWEPTL 351
VCGL+WSP+GRYLASG N N V +W D P H+ AVKA+AWCPW+ +
Sbjct: 311 EVCGLRWSPDGRYLASGGNDNLVNVWPSAPSDGGWGPLQTFTQHVGAVKAVAWCPWQSNV 370
Query: 352 LATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEY 411
LATGGG D+ +R+WN +G V SQV +ILWS Y+EL++ HG L +W+Y
Sbjct: 371 LATGGGTSDRHIRIWNVCSGACLSAVDAQSQVCAILWSPHYKELISGHGFAQNQLVIWKY 430
Query: 412 PRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF---PRDKKRKARQVGSG 468
P + + ELK H R+LS +SPD VA+A+ADET+ +W CF P ++ + + +
Sbjct: 431 PSMAKVAELKGHTARVLSLTMSPDGCTVASAAADETLRLWRCFELDPAQRREREKANAAK 490
Query: 469 SSL 471
SSL
Sbjct: 491 SSL 493
|
Source: Sarcophilus harrisii Species: Sarcophilus harrisii Genus: Sarcophilus Family: Dasyuridae Order: Dasyuromorphia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|148232481|ref|NP_001081776.1| cell division cycle 20 [Xenopus laevis] gi|50370184|gb|AAH76805.1| LOC398044 protein [Xenopus laevis] | Back alignment and taxonomy information |
|---|
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 158/425 (37%), Positives = 242/425 (56%), Gaps = 27/425 (6%)
Query: 74 DRYVVDRSSYDSLCSHYLLQQAN---DETISYREQKKRRHLSFLLHGFEIDRKKVLNQSK 130
DR++ +RS+ + +LL + N D + + +EQ+K ++ L+GF+++ K+L
Sbjct: 86 DRFIPNRSAMQMDVASFLLCKENEPVDTSPTKKEQQKAWAMN--LNGFDMEEAKILRLGG 143
Query: 131 RTV-SPTQFLRTLG-------------KLPRKVKAKPERILEAPSIINDFYTSGLDWGYH 176
R +P + L K R + + P+R+L+AP I ND+Y + +DW
Sbjct: 144 RPQNAPEGYQNNLKVLYSQKTTPGSSKKTGRYIPSMPDRVLDAPDIRNDYYLNLIDWSSQ 203
Query: 177 DTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLW 236
+ LAVAL+ SVY WN T LL++ + YIS V+W LAV ++ E + LW
Sbjct: 204 NALAVALNDSVYLWNYATGDIILLLQMENSEE-YISSVSWIKEGNYLAVGSSNAE-VQLW 261
Query: 237 HEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVC 296
Q+++ ++ + +H +V A+ WN ++LS G+ G+I H+DVR + + + VC
Sbjct: 262 DVQQQKRLRNMISHSSRVGALNWNNHILSSGSRTGHIHHHDVRVAQHHVSTLAGHTQEVC 321
Query: 297 GLKWSPNGRYLASGSN-NTVKIWDFRQLDAKR--PQVNNQCHLSAVKAIAWCPWEPTLLA 353
GLKWSP+GRYLASG+N N V +W Q D+ P H +AVKA+AWCPW+ +LA
Sbjct: 322 GLKWSPDGRYLASGANDNLVNVWPCVQGDSGEFSPVQTFTQHQAAVKAVAWCPWQSNVLA 381
Query: 354 TGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413
TGGG D+ +R+WN +G V T SQV SI+WS Y+EL++ HG L +W+YP
Sbjct: 382 TGGGTSDRHLRIWNVCSGTCLNSVDTHSQVCSIVWSTNYKELISGHGFAQNQLVLWKYPT 441
Query: 414 LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF---PRDKKRKARQVGSGSS 470
+ + ELK H R+L+ +SPD VA+A+ADET+ +W CF P KK K + S S
Sbjct: 442 MTRVTELKGHTARVLNLAMSPDGCTVASAAADETLRLWKCFEVDPVTKKEKEKARSSKSI 501
Query: 471 LEFAI 475
+ +I
Sbjct: 502 IHQSI 506
|
Source: Xenopus laevis Species: Xenopus laevis Genus: Xenopus Family: Pipidae Order: Anura Class: Amphibia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|3298595|gb|AAC41376.1| fizzy1 [Xenopus laevis] | Back alignment and taxonomy information |
|---|
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 155/423 (36%), Positives = 240/423 (56%), Gaps = 23/423 (5%)
Query: 74 DRYVVDRSSYDSLCSHYLLQQANDET-ISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRT 132
DR++ +RS+ + +LL + ND S ++++++ + L+GF+++ K+L R
Sbjct: 86 DRFIPNRSAMQMDVASFLLCKENDPVDTSPTKKEQQKAWAMNLNGFDMEEAKILRLGGRP 145
Query: 133 V-SPTQFLRTLG-------------KLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDT 178
+P + L K R + + P+R+L+AP I ND+Y + +DW +
Sbjct: 146 QNAPEGYQNNLKVLYSQKTTPGSSKKTGRYIPSMPDRVLDAPDIRNDYYLNLIDWSSQNA 205
Query: 179 LAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238
LAVAL+ SVY WN T LL++ + YIS V+W LAV ++ E + LW
Sbjct: 206 LAVALNDSVYLWNYATGDIILLLQMENSEE-YISSVSWIKEGNYLAVGSSNAE-VQLWDV 263
Query: 239 QEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGL 298
Q+++ ++ + +H +V A+ WN ++LS G+ G+I H+DVR + + + VCGL
Sbjct: 264 QQQKRLRNMISHSSRVGALNWNNHILSSGSRTGHIHHHDVRVAQHHVSTLAGHTQEVCGL 323
Query: 299 KWSPNGRYLASGSN-NTVKIWDFRQLDAKR--PQVNNQCHLSAVKAIAWCPWEPTLLATG 355
KWSP+G YLASG+N N V +W Q D+ P H +AVKA+AWCPW+ +LATG
Sbjct: 324 KWSPDGHYLASGANDNLVNVWPCVQGDSGEFSPVQTFTQHQAAVKAVAWCPWQSNVLATG 383
Query: 356 GGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415
GG D+ +R+WN +G V T SQV SI+WS Y+EL++ HG L +W+YP +
Sbjct: 384 GGTSDRHLRIWNVCSGTCLNSVDTHSQVCSIVWSTNYKELISGHGFAQNQLVLWKYPTMT 443
Query: 416 LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF---PRDKKRKARQVGSGSSLE 472
+ ELK H R+L+ +SPD VA+A+ADET+ +W CF P KK K + S S +
Sbjct: 444 RVTELKGHTARVLNLAMSPDGCTVASAAADETLRLWKCFEVDPVTKKEKEKARSSKSIIH 503
Query: 473 FAI 475
+I
Sbjct: 504 QSI 506
|
Source: Xenopus laevis Species: Xenopus laevis Genus: Xenopus Family: Pipidae Order: Anura Class: Amphibia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|215490108|ref|NP_001135925.1| cell division cycle 20 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 158/450 (35%), Positives = 238/450 (52%), Gaps = 22/450 (4%)
Query: 31 QTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRESSRSKMVNTDRYVVDRSSYDSLCSHY 90
T R N + +K KT ++ S ++ K DR++ R S + SH+
Sbjct: 41 NTSRKTNELMPIKKTPSKTPNKSKSPASRSASNTPAKPKTPGGDRFIPSRMSTNFDISHF 100
Query: 91 LLQQANDE-TISYREQKKRRHLSFLLHGFEIDRKKVLN-QSKRTVSPTQFLRTL------ 142
+ Q N+ +S + R+ +S LHG +I+ +VL+ Q+K P + L
Sbjct: 101 KMNQENENLDLSPTQSDYRKAMSENLHGCDINNVRVLSYQNKAPAPPDGYQNALKVVYSQ 160
Query: 143 GKLPRKVKAK-------PERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTN 195
K P V+ P+RIL+AP I++D+Y + +DW + + LAVAL TSVY WN T
Sbjct: 161 SKTPMNVRGATRYIPHAPDRILDAPEIVDDYYLNLIDWSFSNILAVALGTSVYLWNADTG 220
Query: 196 KTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVI 255
L++ D Y++ ++W P L V T + LW + + ++ + +H +V
Sbjct: 221 AIDQLLDLEGAD--YVTSLSWVPNGNLLGV-GTALGPVQLWDASQTKRLRIMNSHSSRVG 277
Query: 256 AMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NT 314
AM WN ++L+ G G ++H DVR I VCGLKWS +GRYLASG N N
Sbjct: 278 AMSWNSHILTTGCRNGQLVHNDVRQREHIVGTIQSHTQEVCGLKWSTDGRYLASGGNDNL 337
Query: 315 VKIWDFRQLDA---KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG 371
+ ++ A P + H +AVKA+ WCPW+ +LA+GGG D+T+R WN NG
Sbjct: 338 LNVYSGLPGQATYQSEPIYSFSQHQAAVKALDWCPWQTNVLASGGGTADRTIRFWNCNNG 397
Query: 372 KEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 431
+ V +SQV +ILWS+ YRELV++HG + L +W+YP L + EL H RIL+
Sbjct: 398 QCINSVNANSQVCAILWSKTYRELVSAHGFANNQLTIWKYPSLTKVAELTGHTNRILNLA 457
Query: 432 LSPDQTCVAAASADETISIWNCFPRDKKRK 461
+SPD + V +A ADET+ +W CF D +K
Sbjct: 458 MSPDGSTVLSAGADETLRMWKCFLPDPNKK 487
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 507 | ||||||
| UNIPROTKB|F1MRW5 | 499 | CDC20 "Uncharacterized protein | 0.788 | 0.801 | 0.377 | 2.4e-69 | |
| UNIPROTKB|Q5H7C0 | 499 | CDC20 "Cell division cycle pro | 0.792 | 0.805 | 0.370 | 3e-69 | |
| UNIPROTKB|Q5ZI36 | 507 | CDC20 "Uncharacterized protein | 0.779 | 0.779 | 0.371 | 4.9e-69 | |
| UNIPROTKB|Q12834 | 499 | CDC20 "Cell division cycle pro | 0.792 | 0.805 | 0.370 | 1.7e-68 | |
| RGD|620477 | 499 | Cdc20 "cell division cycle 20" | 0.773 | 0.785 | 0.378 | 1.2e-67 | |
| UNIPROTKB|Q62623 | 499 | Cdc20 "Cell division cycle pro | 0.773 | 0.785 | 0.378 | 1.2e-67 | |
| MGI|MGI:1859866 | 499 | Cdc20 "cell division cycle 20" | 0.769 | 0.781 | 0.375 | 6.5e-67 | |
| DICTYBASE|DDB_G0285601 | 499 | cdc20 "cdc20/fizzy domain-cont | 0.670 | 0.681 | 0.402 | 1.3e-66 | |
| ZFIN|ZDB-GENE-040426-2044 | 496 | cdc20 "cell division cycle 20 | 0.785 | 0.802 | 0.344 | 5.5e-61 | |
| UNIPROTKB|G4MXK2 | 593 | MGG_01236 "WD repeat-containin | 0.641 | 0.548 | 0.381 | 8.1e-60 |
| UNIPROTKB|F1MRW5 CDC20 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 162/429 (37%), Positives = 242/429 (56%)
Query: 74 DRYVVDRSSYDSLCSHYLL----QQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQS 129
DRY+ R++ + +LL Q N ET + +E +K L+ L+GF+++ K+L S
Sbjct: 77 DRYIPHRNASQMEVASFLLSKENQPDNSETPTKKEHQKAWALN--LNGFDMEEAKILRLS 134
Query: 130 -KRTVSPTQF---LRTL-------G---KLPRKVKAKPERILEAPSIINDFYTSGLDWGY 175
K +P + L+ L G K R + + P+RIL+AP I ND+Y + +DW
Sbjct: 135 GKPQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSS 194
Query: 176 HDTLAVALDTSVYTWNTKTNKT-QLL-VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYI 233
+ LAVALD SVY W+ T QLL +E P YIS VAW LAV + E +
Sbjct: 195 GNVLAVALDNSVYLWSASTGDILQLLQMEQP---GDYISSVAWIKEGNYLAVGTSSAE-V 250
Query: 234 DLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGD 293
LW Q+++ ++ + +H +V ++CWN +LS G+ G+I H+DVR + ++
Sbjct: 251 QLWDVQQQKRLRNMTSHSARVGSLCWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ 310
Query: 294 VVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKR-PQVNNQCHLSAVKAIAWCPWEPTL 351
VCGL+W+P+GR+LASG N N V +W + P H AVKA+AWCPW+ +
Sbjct: 311 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 370
Query: 352 LATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEY 411
LATGGG D+ +R+WN +G V SQV SILWS Y+EL++ HG L +W+Y
Sbjct: 371 LATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY 430
Query: 412 PRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSL 471
P + + ELK H R+LS +SPD VA+A+ADET+ +W CF D R+ R+ S+
Sbjct: 431 PTMAKVAELKGHTARVLSLTMSPDGATVASAAADETLRLWRCFELDPARR-REREKASAA 489
Query: 472 EFAILKQPV 480
+ +++ Q +
Sbjct: 490 KSSLIHQGI 498
|
|
| UNIPROTKB|Q5H7C0 CDC20 "Cell division cycle protein 20 homolog" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 158/427 (37%), Positives = 238/427 (55%)
Query: 74 DRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLH--GFEIDRKKVLNQS-K 130
DRY+ RS+ + +LL + N S KK ++ L+ GF+++ K+L S K
Sbjct: 77 DRYIPHRSASQMEVASFLLSKENQPDNSQTPTKKEHQKAWALNLNGFDVEEAKILRLSGK 136
Query: 131 RTVSPTQF---LRTL-------G---KLPRKVKAKPERILEAPSIINDFYTSGLDWGYHD 177
+P + L+ L G K R + + P+RIL+AP I ND+Y + +DW +
Sbjct: 137 PQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGN 196
Query: 178 TLAVALDTSVYTWNTKTNKT-QLL-VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDL 235
LAVALD SVY W+ + QLL +E P Y+S VAW LAV + E + L
Sbjct: 197 VLAVALDNSVYLWSASSGDILQLLQMEQP---GDYVSSVAWIKEGNYLAVGTSSAE-VQL 252
Query: 236 WHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVV 295
W Q+++ ++ + +H +V ++CWN +LS G+ G+I H+DVR + ++ V
Sbjct: 253 WDVQQQKRLRNMTSHSARVGSLCWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 312
Query: 296 CGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKR-PQVNNQCHLSAVKAIAWCPWEPTLLA 353
CGL+W+P+GR+LASG N N V +W + P H AVKA+AWCPW+ +LA
Sbjct: 313 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 372
Query: 354 TGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413
TGGG D+ +R+WN +G V SQV SILWS Y+EL++ HG L +W+YP
Sbjct: 373 TGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 432
Query: 414 LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEF 473
+ + ELK H R+LS +SPD VA+A+ADET+ +W CF D R+ R+ S+ +
Sbjct: 433 MAKVAELKGHTARVLSLTMSPDGATVASAAADETLRLWRCFELDPARR-REREKASAAKS 491
Query: 474 AILKQPV 480
+++ Q +
Sbjct: 492 SLIHQGI 498
|
|
| UNIPROTKB|Q5ZI36 CDC20 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
Identities = 155/417 (37%), Positives = 234/417 (56%)
Query: 74 DRYVVDRSSYDSLCSHYLLQQANDETI-SYREQKKRRHLSFLLHGFEIDRKKVLNQS-KR 131
DRY+ +RS+ +++LL + ND S ++++++ + L+GF+++ K+L S K
Sbjct: 85 DRYIPNRSTMQMEMANFLLTKENDPAENSPTKKEQQKSWAMNLNGFDVEEAKILRLSGKP 144
Query: 132 TVSPTQFLRTLGKL------P-------RKVKAKPERILEAPSIINDFYTSGLDWGYHDT 178
+P + L L P R + + P+RIL+AP I ND+Y + +DW +
Sbjct: 145 QNAPEGYQNNLKVLYSQKTTPASSRKHGRYIPSMPDRILDAPEIRNDYYLNLIDWSSQNF 204
Query: 179 LAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238
LAVALD VY WN T + L++ D+ Y+S V+W LAV E + LW
Sbjct: 205 LAVALDNCVYLWNHSTGEIIQLLQIENPDD-YVSSVSWIKEGNYLAVGTRNAE-VQLWDV 262
Query: 239 QEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGL 298
Q+++ ++ + +H +V ++ WN +LS G+ G+I H+DVR + +T VCGL
Sbjct: 263 QQQKRLRSMTSHSSRVGSLSWNSYILSSGSRTGHIHHHDVRVAEHHVATLTGHTQEVCGL 322
Query: 299 KWSPNGRYLASGSN-NTVKIWDFRQLDAK--RPQVNNQCHLSAVKAIAWCPWEPTLLATG 355
KWS +GRYLASG N N V IW Q D+ P H AVKA+AWCPW+ +LATG
Sbjct: 323 KWSLDGRYLASGGNDNLVNIWPSVQGDSGDFTPVQTFTQHQGAVKAVAWCPWQSNVLATG 382
Query: 356 GGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415
GG D+ +R+WN +G V SQV SILWS Y+E ++ HG L +W+YP +
Sbjct: 383 GGTSDRHIRIWNVCSGTCLSAVDAHSQVCSILWSTTYKEFISGHGFAQNQLVIWKYPTMA 442
Query: 416 LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRD--KKRKARQVGSGSS 470
+ EL+ H R+L+ +SPD VA+A+ADET+ +W CF D KK++ + S S
Sbjct: 443 KVTELRGHTARVLNLTMSPDGVTVASAAADETLRLWRCFEMDPIKKKEKEKANSAKS 499
|
|
| UNIPROTKB|Q12834 CDC20 "Cell division cycle protein 20 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
Identities = 158/427 (37%), Positives = 237/427 (55%)
Query: 74 DRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLH--GFEIDRKKVLNQS-K 130
DRY+ RS+ + +LL + N S KK ++ L+ GF+++ K+L S K
Sbjct: 77 DRYIPHRSAAQMEVASFLLSKENQPENSQTPTKKEHQKAWALNLNGFDVEEAKILRLSGK 136
Query: 131 RTVSPTQF---LRTL-------G---KLPRKVKAKPERILEAPSIINDFYTSGLDWGYHD 177
+P + L+ L G K R + + P+RIL+AP I ND+Y + +DW +
Sbjct: 137 PQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGN 196
Query: 178 TLAVALDTSVYTWNTKTNKT-QLL-VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDL 235
LAVALD SVY W+ + QLL +E P YIS VAW LAV + E + L
Sbjct: 197 VLAVALDNSVYLWSASSGDILQLLQMEQP---GEYISSVAWIKEGNYLAVGTSSAE-VQL 252
Query: 236 WHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVV 295
W Q+++ ++ + +H +V ++ WN +LS G+ G+I H+DVR + ++ V
Sbjct: 253 WDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 312
Query: 296 CGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKR-PQVNNQCHLSAVKAIAWCPWEPTLLA 353
CGL+W+P+GR+LASG N N V +W + P H AVKA+AWCPW+ +LA
Sbjct: 313 CGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA 372
Query: 354 TGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413
TGGG D+ +R+WN +G V SQV SILWS Y+EL++ HG L +W+YP
Sbjct: 373 TGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 432
Query: 414 LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEF 473
+ + ELK H R+LS +SPD VA+A+ADET+ +W CF D R+ R+ S+ +
Sbjct: 433 MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR-REREKASAAKS 491
Query: 474 AILKQPV 480
+++ Q +
Sbjct: 492 SLIHQGI 498
|
|
| RGD|620477 Cdc20 "cell division cycle 20" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
Identities = 158/417 (37%), Positives = 231/417 (55%)
Query: 74 DRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFL--LHGFEIDRKKVLNQS-K 130
DRY+ RS+ + +LL + N KK ++ L+GF+++ K+L S K
Sbjct: 77 DRYIPQRSASQMEVASFLLSKENQPEDGGTPTKKEHQKAWARNLNGFDVEEAKILRLSGK 136
Query: 131 RTVSPTQF---LRTL-------G---KLPRKVKAKPERILEAPSIINDFYTSGLDWGYHD 177
+P + L+ L G K R + + P+RIL+AP I ND+Y + +DW +
Sbjct: 137 PQNAPEGYQNRLKVLYSQKATPGSSRKACRYIPSLPDRILDAPEIRNDYYLNLVDWSSGN 196
Query: 178 TLAVALDTSVYTWNTKTNKT-QLL-VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDL 235
LAVALD SVY WN + QLL +E P YIS VAW LAV + E + L
Sbjct: 197 VLAVALDNSVYLWNAGSGDILQLLQMEQP---GDYISSVAWIKEGNYLAVGTSNAE-VQL 252
Query: 236 WHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVV 295
W Q+++ ++ + +H +V ++ WN +LS G+ G+I H+DVR + ++ V
Sbjct: 253 WDVQQQKRLRNMTSHSARVSSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 312
Query: 296 CGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKR-PQVNNQCHLSAVKAIAWCPWEPTLLA 353
CGL+W+P+GR+LASG N N V +W ++ P H AVKA+AWCPW+ +LA
Sbjct: 313 CGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWVPLQTFTQHQGAVKAVAWCPWQSNILA 372
Query: 354 TGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413
TGGG D+ +R+WN +G V SQV SILWS Y+EL++ HG L +W+YP
Sbjct: 373 TGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 432
Query: 414 LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKK-RKARQVGSGS 469
+ + ELK H R+LS +SPD VA+A+ADET+ +W CF D R+ R+ S S
Sbjct: 433 MAKVAELKGHTARVLSLTMSPDGATVASAAADETLRLWRCFELDPALRREREKASTS 489
|
|
| UNIPROTKB|Q62623 Cdc20 "Cell division cycle protein 20 homolog" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
Identities = 158/417 (37%), Positives = 231/417 (55%)
Query: 74 DRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFL--LHGFEIDRKKVLNQS-K 130
DRY+ RS+ + +LL + N KK ++ L+GF+++ K+L S K
Sbjct: 77 DRYIPQRSASQMEVASFLLSKENQPEDGGTPTKKEHQKAWARNLNGFDVEEAKILRLSGK 136
Query: 131 RTVSPTQF---LRTL-------G---KLPRKVKAKPERILEAPSIINDFYTSGLDWGYHD 177
+P + L+ L G K R + + P+RIL+AP I ND+Y + +DW +
Sbjct: 137 PQNAPEGYQNRLKVLYSQKATPGSSRKACRYIPSLPDRILDAPEIRNDYYLNLVDWSSGN 196
Query: 178 TLAVALDTSVYTWNTKTNKT-QLL-VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDL 235
LAVALD SVY WN + QLL +E P YIS VAW LAV + E + L
Sbjct: 197 VLAVALDNSVYLWNAGSGDILQLLQMEQP---GDYISSVAWIKEGNYLAVGTSNAE-VQL 252
Query: 236 WHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVV 295
W Q+++ ++ + +H +V ++ WN +LS G+ G+I H+DVR + ++ V
Sbjct: 253 WDVQQQKRLRNMTSHSARVSSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 312
Query: 296 CGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKR-PQVNNQCHLSAVKAIAWCPWEPTLLA 353
CGL+W+P+GR+LASG N N V +W ++ P H AVKA+AWCPW+ +LA
Sbjct: 313 CGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWVPLQTFTQHQGAVKAVAWCPWQSNILA 372
Query: 354 TGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413
TGGG D+ +R+WN +G V SQV SILWS Y+EL++ HG L +W+YP
Sbjct: 373 TGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 432
Query: 414 LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKK-RKARQVGSGS 469
+ + ELK H R+LS +SPD VA+A+ADET+ +W CF D R+ R+ S S
Sbjct: 433 MAKVAELKGHTARVLSLTMSPDGATVASAAADETLRLWRCFELDPALRREREKASTS 489
|
|
| MGI|MGI:1859866 Cdc20 "cell division cycle 20" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 156/415 (37%), Positives = 230/415 (55%)
Query: 74 DRYVVDRSSYDSLCSHYLLQQANDETISYREQKK--RRHLSFLLHGFEIDRKKVLNQS-K 130
DR++ RS+ + +LL + N KK ++ S L+GF+++ K+L S K
Sbjct: 77 DRFIPQRSASQMEVASFLLSKENQPEDRGTPTKKEHQKAWSLNLNGFDVEEAKILRLSGK 136
Query: 131 RTVSPTQF---LRTL-------G---KLPRKVKAKPERILEAPSIINDFYTSGLDWGYHD 177
+P + L+ L G K R + + P+RIL+AP I ND+Y + +DW +
Sbjct: 137 PQNAPEGYQNRLKVLYSQKATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGN 196
Query: 178 TLAVALDTSVYTWNTKTNKT-QLL-VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDL 235
LAVALD SVY WN + QLL +E P YIS VAW LAV + E + L
Sbjct: 197 VLAVALDNSVYLWNAGSGDILQLLQMEQP---GDYISSVAWIKEGNYLAVGTSNAE-VQL 252
Query: 236 WHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVV 295
W Q+++ ++ + +H +V ++ WN +LS G+ G+I H+DVR + ++ V
Sbjct: 253 WDVQQQKRLRNMTSHSARVSSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV 312
Query: 296 CGLKWSPNGRYLASGSN-NTVKIWDFRQLDAK-RPQVNNQCHLSAVKAIAWCPWEPTLLA 353
CGL+W+P+GR+LASG N N V +W ++ P H AVKA+AWCPW+ +LA
Sbjct: 313 CGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWAPLQTFTQHQGAVKAVAWCPWQSNILA 372
Query: 354 TGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413
TGGG D+ +R+WN +G V SQV SILWS Y+EL++ HG L +W+YP
Sbjct: 373 TGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 432
Query: 414 LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKK-RKARQVGS 467
+ + ELK H R+L +SPD VA+A+ADET+ +W CF D R+ R+ S
Sbjct: 433 MAKVAELKGHTARVLGLTMSPDGATVASAAADETLRLWRCFEMDPALRREREKAS 487
|
|
| DICTYBASE|DDB_G0285601 cdc20 "cdc20/fizzy domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 141/350 (40%), Positives = 205/350 (58%)
Query: 129 SKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVY 188
S+ V T ++L K R++ +PERIL+AP I++D+Y + LDW + +A+ L +VY
Sbjct: 145 SQNQVGSTPTDQSLKKQFRQIPQQPERILDAPDIVDDYYLNLLDWSSQNVIAIPLGQTVY 204
Query: 189 TWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAV-TNTCTEYIDLWHEQEERLIQKL 247
WN T++ Q L + D+ YI+ + W LAV TN+CT I LW + +++L
Sbjct: 205 LWNATTSEIQRLFQVEQQDD-YITSLQWTKDGNYLAVGTNSCT--IQLWDVAHTKKVREL 261
Query: 248 RTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYL 307
R H +V A+ WN +LS G+ NI ++DVR + + + ++ VCGLKWS +G L
Sbjct: 262 RGHAGRVGALAWNDYILSSGSSDTNIFNHDVRVQNHHVSTLSGHSQEVCGLKWSHDGGQL 321
Query: 308 ASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLW 366
ASG N N + IWD + + P + H +AV+A+AWCP++P LLATGGG D+T+R W
Sbjct: 322 ASGGNDNIINIWDINSENFETPAHTFEQHTAAVRALAWCPFQPNLLATGGGAADRTIRFW 381
Query: 367 NSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQER 426
N++ G V T SQV SI WS YRELV+SHG L +W+YP + EL H R
Sbjct: 382 NTITGVCLNTVDTMSQVCSIQWSTTYRELVSSHGYSQNQLCVWKYPSMVKCAELTGHTSR 441
Query: 427 ILSAVLSPDQTCVAAASADETISIWNCFPRDKK-----RKARQVGSGSSL 471
L +SPD V +ASADET+ W F ++ K RK+++V GS +
Sbjct: 442 ALHTAISPDGETVVSASADETLRFWRVFEKENKLPTANRKSKEVSDGSMM 491
|
|
| ZFIN|ZDB-GENE-040426-2044 cdc20 "cell division cycle 20 homolog" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 145/421 (34%), Positives = 228/421 (54%)
Query: 74 DRYVVDRSSYDSLCSHYLLQQAND--ETISYREQKKRRHLSFLLHGFEIDRKKVLNQS-K 130
DRY+ R++ + +L+ + N+ E ++ S L+G++I+ K+L+ K
Sbjct: 79 DRYIPTRNNKQLDVASFLISKENEPVEESEPSTAPNQKAWSMSLNGYDIEEAKILHLGGK 138
Query: 131 RTVSPTQF---LRTL-GKLPRKVKAK--------PERILEAPSIINDFYTSGLDWGYHDT 178
+P + L+ L ++P V K PERIL+AP I NDFY + +DWG +
Sbjct: 139 PLYAPEGYQNNLKVLYSQVPTPVSVKKSRYISSYPERILDAPDIRNDFYLNLMDWGRQNV 198
Query: 179 LAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAV-TNTCTEYIDLWH 237
LAV L VY W+ LL + DN YI V+W LA+ T+ C ++LW
Sbjct: 199 LAVGLANQVYLWDAGEGDIVLLKKMED-DNEYICSVSWSKDGNFLAIGTSDCK--VELWD 255
Query: 238 EQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCG 297
Q ++ ++ + H +V + WN ++LS G+ G I +DVR + VCG
Sbjct: 256 VQYQKRLRSMDGHSARVGCLSWNDHILSSGSRSGLIHQHDVRVADHHIFTFGGHTQEVCG 315
Query: 298 LKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGG 356
L WSP+GRYLASG N N + IW + H AVKA+AWCPW+P + A+GG
Sbjct: 316 LTWSPDGRYLASGGNDNMMYIWPMTTGSENQAIHALSEHQGAVKALAWCPWQPNIPASGG 375
Query: 357 GICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL 416
G D+ +R+WN+ +G + T SQV+S++++ Y+ELV+ HG + +W+YP
Sbjct: 376 GTSDRHIRIWNASSGSCISSLDTCSQVSSLVFAPNYKELVSGHGFAHDKVVIWKYPSFAK 435
Query: 417 IEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKK--RKARQVGSGSSLEFA 474
+ E + H+ RIL+ LSPD + +A+ +ADETI +W CF ++K +K +Q SG ++ +
Sbjct: 436 VTEHEGHEARILNLALSPDGSTLASIAADETIRLWKCFEKEKDAAKKPKQA-SGRIIQQS 494
Query: 475 I 475
I
Sbjct: 495 I 495
|
|
| UNIPROTKB|G4MXK2 MGG_01236 "WD repeat-containing protein slp1" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 127/333 (38%), Positives = 183/333 (54%)
Query: 147 RKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTY 206
R++ PER+L+AP +I+D+Y + LDW + +A+ L+ SVY W+ L+E T
Sbjct: 264 RRIATAPERVLDAPGLIDDYYLNLLDWSSGNQVAIGLERSVYVWSADEGSVSCLLE--TS 321
Query: 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSC 266
+ Y+S V W ++V T + +W E ++ + H +V M WN +LLS
Sbjct: 322 PDTYVSSVKWSADGAYVSV-GMGTGEVQIWDVAEGAKVRSMHGHDTRVSVMGWNKHLLST 380
Query: 267 GTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDA 325
G G + ++DVR + VCGL+W +G LA+G N N V IWD R L
Sbjct: 381 GARSGLVFNHDVRIAEHKVAELVSHTSEVCGLEWRSDGAQLATGGNDNLVSIWDARSLAV 440
Query: 326 KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTS 385
P+ H +AVKA+AWCPW LLATGGG D+ + WNS +G + T SQVTS
Sbjct: 441 --PKFTKTNHKAAVKALAWCPWNMNLLATGGGSYDRHIHFWNSTSGARVNSIDTGSQVTS 498
Query: 386 ILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASAD 445
+ WS YRE+V+S G D SL +W YP L E+ H+ R+L + LSPD +A A+AD
Sbjct: 499 LRWSPHYREIVSSSGFPDNSLSIWSYPTLVRTVEIPAHESRVLHSCLSPDGQMLATAAAD 558
Query: 446 ETISIWNCFPRDKKRKARQVGSGSSLEFAILKQ 478
E++ W F +KK A G G+S + ++KQ
Sbjct: 559 ESLKFWKVF--EKKPGASSAGLGASSKADMVKQ 589
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q54MZ3 | CDC20_DICDI | No assigned EC number | 0.4028 | 0.6706 | 0.6813 | yes | N/A |
| Q9JJ66 | CDC20_MOUSE | No assigned EC number | 0.3662 | 0.7692 | 0.7815 | yes | N/A |
| P78972 | SLP1_SCHPO | No assigned EC number | 0.3196 | 0.7573 | 0.7868 | yes | N/A |
| Q62623 | CDC20_RAT | No assigned EC number | 0.3741 | 0.7731 | 0.7855 | yes | N/A |
| Q5H7C0 | CDC20_PIG | No assigned EC number | 0.3679 | 0.8047 | 0.8176 | yes | N/A |
| P53197 | CDH1_YEAST | No assigned EC number | 0.3324 | 0.6844 | 0.6130 | yes | N/A |
| Q12834 | CDC20_HUMAN | No assigned EC number | 0.3682 | 0.7889 | 0.8016 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 507 | |||
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-31 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-24 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-20 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-18 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-12 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 7e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.002 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 125 bits (313), Expect = 4e-31
Identities = 91/379 (24%), Positives = 157/379 (41%), Gaps = 19/379 (5%)
Query: 85 SLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGK 144
S LL ++D TI + L L G V + + L
Sbjct: 74 SPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDS--SVSKLALSSPDGNSILLASSS 131
Query: 145 LPRKVKA---KPERILEAPSIINDFYTSGLDW---GYHDTLAVALDTSVYTWNTKTNKTQ 198
L VK L + + L + G +LD ++ W+ +T K
Sbjct: 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL 191
Query: 199 LLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ-KLRTHMHQVI-A 256
+ T +S +A+ P L + + I LW +L++ L H V+ +
Sbjct: 192 STLAGHT---DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSS 248
Query: 257 MCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTV 315
+G+LL+ G+ G I +D+R+ S ++ V + +SP+G+ LASGS+ TV
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308
Query: 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC 375
++WD + + H V ++++ P L++ G D T+RLW+ GK
Sbjct: 309 RLWDLETGK-LLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD--DGTIRLWDLRTGKPLK 365
Query: 376 HVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPD 435
++ S V S+ +S V S G D ++++W+ L+ L H R+ S SPD
Sbjct: 366 TLEGHSNVLSVSFSPD--GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPD 423
Query: 436 QTCVAAASADETISIWNCF 454
+A+ S+D TI +W+
Sbjct: 424 GKSLASGSSDNTIRLWDLK 442
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 4e-24
Identities = 70/281 (24%), Positives = 123/281 (43%), Gaps = 33/281 (11%)
Query: 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVT---NTCTEYIDLWHEQE 240
D ++ W+ +T + ++ T ++ A LA T LW +
Sbjct: 30 DGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY---LASGSSDKTIR----LWDLET 82
Query: 241 ERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREG--DVVC 296
++ L H V ++ + +G +LS + I +DV T T G D V
Sbjct: 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET---GKCLTTLRGHTDWVN 139
Query: 297 GLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATG 355
+ +SP+G ++AS S + T+K+WD R + H V ++A+ P LL++
Sbjct: 140 SVAFSPDGTFVASSSQDGTIKLWDLRTG---KCVATLTGHTGEVNSVAFSPDGEKLLSSS 196
Query: 356 GGICDQTVRLWNSMNGKEKC----HVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEY 411
D T++LW+ GK H ++ V S+ +S L+ S G +D ++++W+
Sbjct: 197 S---DGTIKLWDLSTGKCLGTLRGH---ENGVNSVAFSPD-GYLLAS-GSEDGTIRVWDL 248
Query: 412 PRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
++ L H + S SPD +A+ SAD TI IW+
Sbjct: 249 RTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 7e-20
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 23/219 (10%)
Query: 243 LIQKLRTHMHQVIAMCWN--GNLLSCGTIGGNILHYDVRTHSDYPTAITREG--DVVCGL 298
L + L+ H V + ++ G LL+ G+ G I +D+ T T +G V +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL---RTLKGHTGPVRDV 57
Query: 299 KWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGG 357
S +G YLASGS + T+++WD + R H S V ++A+ P + +L++
Sbjct: 58 AASADGTYLASGSSDKTIRLWDLETGECVRTLT---GHTSYVSSVAFSP-DGRILSSSSR 113
Query: 358 ICDQTVRLWNSMNGKEK----CHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413
D+T+++W+ GK H V S+ +S V S QD ++K+W+
Sbjct: 114 --DKTIKVWDVETGKCLTTLRGH---TDWVNSVAFS-PDGTFVAS-SSQDGTIKLWDLRT 166
Query: 414 LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
+ L H + S SPD + ++S+D TI +W+
Sbjct: 167 GKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD 205
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.9 bits (211), Expect = 6e-18
Identities = 78/396 (19%), Positives = 150/396 (37%), Gaps = 24/396 (6%)
Query: 100 ISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEA 159
S + K + L G ++ +L+ L +
Sbjct: 5 SSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGH 64
Query: 160 PSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR 219
I S L+ + D ++ W+ + + +D++ P
Sbjct: 65 EDSITSIAFSPDG---ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPD 121
Query: 220 TTDLAVTNTCTE-YIDLWHEQEE-RLIQKLRTHMHQVIAMCWNGN---LLSCGTIGGNIL 274
+ + ++ + + LW +LI+ L H V ++ ++ + L S ++ G I
Sbjct: 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181
Query: 275 HYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLAS--GSNNTVKIWDFRQLDAKRPQVNN 332
+D+RT T V L +SP+G L + S+ T+++WD R ++
Sbjct: 182 LWDLRTGKPLSTLAGHTDPVSS-LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS- 239
Query: 333 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWN--SMNGKEKCHVKTDSQVTSILWSE 390
H +V ++ + +LLA+G D T+RLW+ S + + S V S+ +S
Sbjct: 240 -GHSDSV--VSSFSPDGSLLASGS--SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294
Query: 391 QYRELVTSHGKQDCSLKMW--EYPRLHLIEELKIHQERILSAVLSPD-QTCVAAASADET 447
+ L + G D ++++W E +L LK H+ + S SPD V+ S D T
Sbjct: 295 DGKLLAS--GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352
Query: 448 ISIWNCFPRDKKRKARQVGSGSSLEFAILKQPVSLT 483
I +W+ + + S+ F+ + VS
Sbjct: 353 IRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSG 388
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.8 bits (164), Expect = 4e-12
Identities = 62/349 (17%), Positives = 125/349 (35%), Gaps = 36/349 (10%)
Query: 5 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQ--VTSILWSEQY 62
H S+V +A + + D TV+LW+ + VTS+ +S
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG 167
Query: 63 RESSRSKMVNTDRYVVDRSSYDSLCSH------------------YLLQQANDETISYRE 104
+ + ++ + D + L + + ++D TI +
Sbjct: 168 KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227
Query: 105 QKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVK---AKPERILEAPS 161
+ L L G + + SP L G ++ + L
Sbjct: 228 LSTGKLLRSTLSGHS-------DSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL 280
Query: 162 IINDFYTSGLDW-GYHDTLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR 219
+ + + LA D +V W+ +T K + ++ +S +++ P
Sbjct: 281 SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP-VSSLSFSPD 339
Query: 220 TTDLAVTNTCTEYIDLWHEQEERLIQKLRTH-MHQVIAMCWNGNLLSCGTIGGNILHYDV 278
+ L + I LW + + ++ L H ++ +G ++S G+ G + +D+
Sbjct: 340 GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDL 399
Query: 279 RTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAK 326
T S + V L +SP+G+ LASGS +NT+++WD +
Sbjct: 400 STGSLLRN-LDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS 447
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 6e-05
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 293 DVVCGLKWSPNGRYLASGS-NNTVKIWD 319
V + +SP+G LASGS + TV++WD
Sbjct: 12 GPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 293 DVVCGLKWSPNGRYLASGS-NNTVKIWD 319
V + +SP+G+YLASGS + T+K+WD
Sbjct: 13 GPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 7e-04
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 415 HLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
L++ LK H + S SPD +A+ S D TI +W+
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.002
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 416 LIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
L+ LK H + S SPD +A+ S D T+ +W+
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 507 | |||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0305|consensus | 484 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0291|consensus | 893 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| KOG0319|consensus | 775 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0315|consensus | 311 | 100.0 | ||
| KOG0286|consensus | 343 | 100.0 | ||
| KOG0306|consensus | 888 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0318|consensus | 603 | 100.0 | ||
| KOG0296|consensus | 399 | 100.0 | ||
| KOG0265|consensus | 338 | 100.0 | ||
| KOG0284|consensus | 464 | 100.0 | ||
| KOG0273|consensus | 524 | 100.0 | ||
| KOG0295|consensus | 406 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| KOG0645|consensus | 312 | 100.0 | ||
| KOG0285|consensus | 460 | 100.0 | ||
| KOG0295|consensus | 406 | 100.0 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0284|consensus | 464 | 100.0 | ||
| KOG0276|consensus | 794 | 100.0 | ||
| KOG0266|consensus | 456 | 100.0 | ||
| KOG0281|consensus | 499 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| KOG0282|consensus | 503 | 100.0 | ||
| KOG0285|consensus | 460 | 100.0 | ||
| KOG1408|consensus | 1080 | 100.0 | ||
| KOG0265|consensus | 338 | 100.0 | ||
| KOG0645|consensus | 312 | 100.0 | ||
| KOG0316|consensus | 307 | 100.0 | ||
| KOG0306|consensus | 888 | 100.0 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0293|consensus | 519 | 100.0 | ||
| KOG0278|consensus | 334 | 100.0 | ||
| KOG0282|consensus | 503 | 100.0 | ||
| KOG0296|consensus | 399 | 100.0 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0316|consensus | 307 | 100.0 | ||
| KOG0276|consensus | 794 | 100.0 | ||
| KOG0281|consensus | 499 | 100.0 | ||
| KOG0293|consensus | 519 | 100.0 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0266|consensus | 456 | 100.0 | ||
| KOG1407|consensus | 313 | 100.0 | ||
| KOG0277|consensus | 311 | 100.0 | ||
| KOG1446|consensus | 311 | 100.0 | ||
| KOG0313|consensus | 423 | 100.0 | ||
| KOG0275|consensus | 508 | 100.0 | ||
| KOG0310|consensus | 487 | 100.0 | ||
| KOG0292|consensus | 1202 | 100.0 | ||
| KOG0288|consensus | 459 | 100.0 | ||
| KOG2106|consensus | 626 | 99.98 | ||
| KOG1539|consensus | 910 | 99.98 | ||
| KOG0313|consensus | 423 | 99.98 | ||
| KOG0274|consensus | 537 | 99.98 | ||
| KOG1407|consensus | 313 | 99.97 | ||
| KOG0643|consensus | 327 | 99.97 | ||
| KOG0292|consensus | 1202 | 99.97 | ||
| KOG0277|consensus | 311 | 99.97 | ||
| KOG1446|consensus | 311 | 99.97 | ||
| KOG0643|consensus | 327 | 99.97 | ||
| KOG0772|consensus | 641 | 99.97 | ||
| KOG0268|consensus | 433 | 99.97 | ||
| KOG0283|consensus | 712 | 99.97 | ||
| KOG0310|consensus | 487 | 99.97 | ||
| KOG0283|consensus | 712 | 99.97 | ||
| KOG0294|consensus | 362 | 99.97 | ||
| KOG0289|consensus | 506 | 99.97 | ||
| KOG0772|consensus | 641 | 99.97 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG1063|consensus | 764 | 99.97 | ||
| KOG0647|consensus | 347 | 99.97 | ||
| KOG2106|consensus | 626 | 99.97 | ||
| KOG0275|consensus | 508 | 99.97 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0274|consensus | 537 | 99.96 | ||
| KOG0973|consensus | 942 | 99.96 | ||
| KOG0264|consensus | 422 | 99.96 | ||
| KOG0640|consensus | 430 | 99.96 | ||
| KOG1539|consensus | 910 | 99.96 | ||
| KOG1036|consensus | 323 | 99.96 | ||
| KOG0278|consensus | 334 | 99.96 | ||
| KOG0268|consensus | 433 | 99.96 | ||
| KOG0647|consensus | 347 | 99.96 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.96 | |
| KOG0640|consensus | 430 | 99.96 | ||
| KOG2096|consensus | 420 | 99.96 | ||
| KOG0288|consensus | 459 | 99.96 | ||
| KOG0641|consensus | 350 | 99.96 | ||
| KOG1063|consensus | 764 | 99.96 | ||
| KOG0646|consensus | 476 | 99.96 | ||
| KOG0973|consensus | 942 | 99.96 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG0299|consensus | 479 | 99.95 | ||
| KOG0305|consensus | 484 | 99.95 | ||
| KOG0650|consensus | 733 | 99.95 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0301|consensus | 745 | 99.95 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.95 | |
| KOG0308|consensus | 735 | 99.95 | ||
| KOG1036|consensus | 323 | 99.95 | ||
| KOG1274|consensus | 933 | 99.95 | ||
| KOG0300|consensus | 481 | 99.95 | ||
| KOG2048|consensus | 691 | 99.95 | ||
| KOG0308|consensus | 735 | 99.95 | ||
| KOG0264|consensus | 422 | 99.95 | ||
| KOG2055|consensus | 514 | 99.95 | ||
| KOG2096|consensus | 420 | 99.94 | ||
| KOG0299|consensus | 479 | 99.94 | ||
| KOG0641|consensus | 350 | 99.94 | ||
| KOG1274|consensus | 933 | 99.94 | ||
| KOG0639|consensus | 705 | 99.94 | ||
| KOG0269|consensus | 839 | 99.94 | ||
| KOG4283|consensus | 397 | 99.94 | ||
| KOG0639|consensus | 705 | 99.94 | ||
| KOG0294|consensus | 362 | 99.94 | ||
| KOG0289|consensus | 506 | 99.94 | ||
| KOG1445|consensus | 1012 | 99.93 | ||
| KOG0300|consensus | 481 | 99.93 | ||
| KOG1273|consensus | 405 | 99.93 | ||
| KOG0321|consensus | 720 | 99.93 | ||
| KOG1332|consensus | 299 | 99.93 | ||
| KOG0646|consensus | 476 | 99.93 | ||
| KOG1332|consensus | 299 | 99.93 | ||
| KOG2055|consensus | 514 | 99.93 | ||
| KOG4328|consensus | 498 | 99.93 | ||
| KOG0301|consensus | 745 | 99.93 | ||
| KOG1408|consensus | 1080 | 99.92 | ||
| KOG2445|consensus | 361 | 99.92 | ||
| KOG4378|consensus | 673 | 99.92 | ||
| KOG4283|consensus | 397 | 99.92 | ||
| KOG0269|consensus | 839 | 99.92 | ||
| KOG0302|consensus | 440 | 99.91 | ||
| KOG4378|consensus | 673 | 99.91 | ||
| KOG0270|consensus | 463 | 99.91 | ||
| KOG0267|consensus | 825 | 99.91 | ||
| KOG2048|consensus | 691 | 99.91 | ||
| KOG0267|consensus | 825 | 99.9 | ||
| KOG2919|consensus | 406 | 99.9 | ||
| KOG2919|consensus | 406 | 99.9 | ||
| KOG1963|consensus | 792 | 99.9 | ||
| KOG4328|consensus | 498 | 99.89 | ||
| KOG0307|consensus | 1049 | 99.89 | ||
| KOG0270|consensus | 463 | 99.89 | ||
| KOG0302|consensus | 440 | 99.89 | ||
| KOG1587|consensus | 555 | 99.88 | ||
| KOG1273|consensus | 405 | 99.88 | ||
| KOG2445|consensus | 361 | 99.87 | ||
| KOG1188|consensus | 376 | 99.87 | ||
| KOG1034|consensus | 385 | 99.87 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.87 | |
| KOG0650|consensus | 733 | 99.87 | ||
| KOG0307|consensus | 1049 | 99.86 | ||
| KOG1445|consensus | 1012 | 99.86 | ||
| KOG1538|consensus | 1081 | 99.86 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.86 | |
| KOG1538|consensus | 1081 | 99.86 | ||
| KOG1007|consensus | 370 | 99.86 | ||
| KOG0290|consensus | 364 | 99.85 | ||
| KOG1009|consensus | 434 | 99.84 | ||
| KOG2110|consensus | 391 | 99.84 | ||
| KOG0642|consensus | 577 | 99.84 | ||
| KOG0321|consensus | 720 | 99.83 | ||
| KOG1034|consensus | 385 | 99.83 | ||
| KOG4497|consensus | 447 | 99.83 | ||
| KOG2110|consensus | 391 | 99.82 | ||
| KOG1524|consensus | 737 | 99.82 | ||
| KOG0322|consensus | 323 | 99.81 | ||
| KOG0290|consensus | 364 | 99.81 | ||
| KOG1009|consensus | 434 | 99.81 | ||
| KOG4227|consensus | 609 | 99.81 | ||
| KOG1007|consensus | 370 | 99.8 | ||
| KOG0303|consensus | 472 | 99.8 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.8 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.8 | |
| KOG0644|consensus | 1113 | 99.79 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.79 | |
| KOG0303|consensus | 472 | 99.78 | ||
| KOG0649|consensus | 325 | 99.78 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.77 | |
| KOG0322|consensus | 323 | 99.77 | ||
| KOG0642|consensus | 577 | 99.77 | ||
| KOG1517|consensus | 1387 | 99.77 | ||
| KOG0644|consensus | 1113 | 99.77 | ||
| KOG1188|consensus | 376 | 99.76 | ||
| KOG2111|consensus | 346 | 99.76 | ||
| KOG1587|consensus | 555 | 99.75 | ||
| KOG4497|consensus | 447 | 99.75 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.75 | |
| KOG2139|consensus | 445 | 99.75 | ||
| KOG2111|consensus | 346 | 99.75 | ||
| KOG0649|consensus | 325 | 99.74 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.74 | |
| KOG1334|consensus | 559 | 99.74 | ||
| KOG1963|consensus | 792 | 99.73 | ||
| KOG0771|consensus | 398 | 99.73 | ||
| KOG2139|consensus | 445 | 99.73 | ||
| KOG1517|consensus | 1387 | 99.72 | ||
| KOG2321|consensus | 703 | 99.72 | ||
| KOG1524|consensus | 737 | 99.72 | ||
| KOG4227|consensus | 609 | 99.72 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.72 | |
| KOG2394|consensus | 636 | 99.71 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.71 | |
| KOG1523|consensus | 361 | 99.71 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.7 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.7 | |
| KOG1523|consensus | 361 | 99.7 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.7 | |
| KOG1354|consensus | 433 | 99.7 | ||
| KOG2315|consensus | 566 | 99.7 | ||
| KOG2315|consensus | 566 | 99.69 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.69 | |
| KOG1310|consensus | 758 | 99.68 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.67 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.67 | |
| KOG1272|consensus | 545 | 99.67 | ||
| KOG1272|consensus | 545 | 99.67 | ||
| KOG0771|consensus | 398 | 99.67 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.66 | |
| KOG1240|consensus | 1431 | 99.66 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.65 | |
| KOG1334|consensus | 559 | 99.64 | ||
| KOG2321|consensus | 703 | 99.64 | ||
| KOG3881|consensus | 412 | 99.64 | ||
| KOG3881|consensus | 412 | 99.63 | ||
| KOG1310|consensus | 758 | 99.62 | ||
| KOG1240|consensus | 1431 | 99.61 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.61 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.6 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.59 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.58 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.57 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.57 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.57 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.56 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.55 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.55 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.55 | |
| KOG2394|consensus | 636 | 99.55 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.54 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.54 | |
| KOG2314|consensus | 698 | 99.53 | ||
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.52 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG2314|consensus | 698 | 99.49 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.49 | |
| KOG1912|consensus | 1062 | 99.45 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.44 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.44 | |
| KOG4547|consensus | 541 | 99.42 | ||
| KOG1409|consensus | 404 | 99.42 | ||
| KOG2041|consensus | 1189 | 99.41 | ||
| KOG0974|consensus | 967 | 99.41 | ||
| KOG0280|consensus | 339 | 99.41 | ||
| KOG4547|consensus | 541 | 99.38 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.36 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.33 | |
| KOG0309|consensus | 1081 | 99.32 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.32 | |
| KOG1354|consensus | 433 | 99.32 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.31 | |
| KOG2041|consensus | 1189 | 99.3 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.3 | |
| KOG0974|consensus | 967 | 99.3 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.3 | |
| KOG1912|consensus | 1062 | 99.29 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.28 | |
| KOG1064|consensus | 2439 | 99.28 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.23 | |
| KOG1064|consensus | 2439 | 99.23 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.2 | |
| KOG0280|consensus | 339 | 99.17 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.17 | |
| KOG4532|consensus | 344 | 99.15 | ||
| KOG1645|consensus | 463 | 99.11 | ||
| KOG1409|consensus | 404 | 99.1 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.09 | |
| KOG3914|consensus | 390 | 99.09 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.08 | |
| KOG4190|consensus | 1034 | 99.04 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.04 | |
| KOG4532|consensus | 344 | 99.02 | ||
| KOG4190|consensus | 1034 | 99.0 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.0 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.97 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.97 | |
| KOG3914|consensus | 390 | 98.97 | ||
| KOG1832|consensus | 1516 | 98.95 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.93 | |
| KOG4714|consensus | 319 | 98.91 | ||
| KOG1920|consensus | 1265 | 98.89 | ||
| KOG0309|consensus | 1081 | 98.85 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.84 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.8 | |
| KOG2695|consensus | 425 | 98.8 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.78 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.78 | |
| KOG0882|consensus | 558 | 98.75 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.75 | |
| KOG4714|consensus | 319 | 98.75 | ||
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.74 | |
| KOG0882|consensus | 558 | 98.74 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.74 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.71 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.69 | |
| KOG1275|consensus | 1118 | 98.69 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.66 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.65 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.62 | |
| KOG2695|consensus | 425 | 98.62 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.6 | |
| KOG1275|consensus | 1118 | 98.59 | ||
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.57 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.55 | |
| KOG1645|consensus | 463 | 98.54 | ||
| KOG2066|consensus | 846 | 98.54 | ||
| KOG2114|consensus | 933 | 98.51 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.5 | |
| KOG2066|consensus | 846 | 98.49 | ||
| KOG1920|consensus | 1265 | 98.49 | ||
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.48 | |
| KOG1832|consensus | 1516 | 98.45 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.4 | |
| KOG3617|consensus | 1416 | 98.36 | ||
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.35 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.34 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.3 | |
| KOG1008|consensus | 783 | 98.29 | ||
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.27 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.27 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.26 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.25 | |
| KOG2114|consensus | 933 | 98.24 | ||
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.23 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.23 | |
| KOG4649|consensus | 354 | 98.21 | ||
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.2 | |
| KOG1008|consensus | 783 | 98.18 | ||
| KOG3621|consensus | 726 | 98.13 | ||
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.1 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.1 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.06 | |
| KOG4649|consensus | 354 | 98.05 | ||
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.05 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.0 | |
| KOG3621|consensus | 726 | 98.0 | ||
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.97 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.96 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.92 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.9 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.85 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.84 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.83 | |
| KOG3617|consensus | 1416 | 97.66 | ||
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.65 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.63 | |
| KOG4640|consensus | 665 | 97.57 | ||
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.5 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.5 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.44 | |
| KOG1897|consensus | 1096 | 97.44 | ||
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.36 | |
| KOG2395|consensus | 644 | 97.35 | ||
| KOG4640|consensus | 665 | 97.34 | ||
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.33 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.3 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.29 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.24 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.22 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.15 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.09 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.04 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.03 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.97 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.97 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.94 | |
| KOG2395|consensus | 644 | 96.93 | ||
| KOG1897|consensus | 1096 | 96.89 | ||
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.83 | |
| PRK10115 | 686 | protease 2; Provisional | 96.8 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.79 | |
| KOG2079|consensus | 1206 | 96.79 | ||
| KOG4441|consensus | 571 | 96.71 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 96.69 | |
| KOG2444|consensus | 238 | 96.67 | ||
| KOG4499|consensus | 310 | 96.67 | ||
| PRK10115 | 686 | protease 2; Provisional | 96.47 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.42 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.37 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.32 | |
| KOG4441|consensus | 571 | 96.31 | ||
| KOG2079|consensus | 1206 | 96.3 | ||
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.24 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.17 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 96.04 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.96 | |
| KOG2280|consensus | 829 | 95.93 | ||
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.85 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.5 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 95.45 | |
| KOG3630|consensus | 1405 | 95.39 | ||
| KOG2444|consensus | 238 | 95.34 | ||
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.32 | |
| KOG3630|consensus | 1405 | 95.32 | ||
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.26 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.25 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.22 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.22 | |
| KOG4499|consensus | 310 | 95.17 | ||
| KOG2377|consensus | 657 | 95.05 | ||
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 95.01 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.01 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 94.9 | |
| KOG3616|consensus | 1636 | 94.9 | ||
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 94.87 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.82 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 94.77 | |
| KOG2280|consensus | 829 | 94.59 | ||
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 94.56 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 94.56 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.46 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.36 | |
| KOG2377|consensus | 657 | 94.26 | ||
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.18 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 94.09 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 93.95 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 93.92 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 93.89 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 93.88 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 93.76 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.71 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.32 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 93.3 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.28 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 93.2 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 92.74 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 92.73 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 92.24 | |
| KOG2247|consensus | 615 | 92.17 | ||
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 92.03 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 91.69 | |
| KOG4460|consensus | 741 | 90.25 | ||
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 90.19 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 90.09 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 90.08 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 90.0 | |
| KOG2247|consensus | 615 | 89.89 | ||
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 89.81 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 89.77 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 89.44 | |
| KOG1900|consensus | 1311 | 89.32 | ||
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 89.3 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 88.99 | |
| KOG1916|consensus | 1283 | 88.41 | ||
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 88.09 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 87.84 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 87.31 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 87.18 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 87.03 | |
| KOG1900|consensus | 1311 | 86.93 | ||
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 86.59 | |
| KOG1983|consensus | 993 | 86.39 | ||
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 85.71 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 85.62 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 85.62 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 85.22 | |
| KOG1896|consensus | 1366 | 85.13 | ||
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 84.13 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 83.38 | |
| KOG1896|consensus | 1366 | 83.04 | ||
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 82.93 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 82.87 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 82.76 | |
| KOG4460|consensus | 741 | 81.96 | ||
| KOG1916|consensus | 1283 | 81.74 | ||
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 81.31 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 81.23 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 80.17 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 80.14 |
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-54 Score=362.80 Aligned_cols=322 Identities=24% Similarity=0.427 Sum_probs=285.8
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
+.||.++|.|++|+|+|++ ||||+ -|.++|+||..+..++.+.+ |..
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~-l~tGs--GD~TvR~WD~~TeTp~~t~KgH~~----------------------------- 158 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSR-LVTGS--GDTTVRLWDLDTETPLFTCKGHKN----------------------------- 158 (480)
T ss_pred cCCCCCcEEEEEecCCCce-EEecC--CCceEEeeccCCCCcceeecCCcc-----------------------------
Confidence 6799999999999999998 99999 59999999999998877654 332
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 159 -------------------------------------------------------------------------------- 158 (480)
T KOG0271|consen 159 -------------------------------------------------------------------------------- 158 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEcc-----CCCeEEEEeCCCCcE
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKP-----RTTDLAVTNTCTEYI 233 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~dg~i 233 (507)
+|.|++|+||+ +++++.||.|++||.++|+.. -..+++ |...|++++|.| ..++|+++ +.||.+
T Consensus 159 ------WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~-g~~l~g-H~K~It~Lawep~hl~p~~r~las~-skDg~v 229 (480)
T KOG0271|consen 159 ------WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI-GRALRG-HKKWITALAWEPLHLVPPCRRLASS-SKDGSV 229 (480)
T ss_pred ------EEEEEEECCCcchhhccccCCeEEEecCCCCCcc-cccccC-cccceeEEeecccccCCCccceecc-cCCCCE
Confidence 34567777777 666789999999999998854 445677 999999999976 56788888 999999
Q ss_pred EEEeCCCceeEEEEeecCccEEEEEee-CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEc-----------
Q psy8285 234 DLWHEQEERLIQKLRTHMHQVIAMCWN-GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWS----------- 301 (507)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~----------- 301 (507)
+|||+..+.++..+.+|..+|+|+.|. ..+|++|+.|++|++|+...+. ....+.+|...|+.++.+
T Consensus 230 rIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~-~~r~lkGHahwvN~lalsTdy~LRtgaf~ 308 (480)
T KOG0271|consen 230 RIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGK-LCRELKGHAHWVNHLALSTDYVLRTGAFD 308 (480)
T ss_pred EEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchh-HHHhhcccchheeeeeccchhhhhccccc
Confidence 999999999999999999999999995 7799999999999999999865 778899999999998887
Q ss_pred CCC-------------------------CEEEEEeC-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEE
Q psy8285 302 PNG-------------------------RYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATG 355 (507)
Q Consensus 302 ~~~-------------------------~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 355 (507)
|.+ ..+++|+| .++.+|+.... .+++..+.+|..-|+.+.||||++ +++++
T Consensus 309 ~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~--kkpi~rmtgHq~lVn~V~fSPd~r-~IASa 385 (480)
T KOG0271|consen 309 HTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS--KKPITRMTGHQALVNHVSFSPDGR-YIASA 385 (480)
T ss_pred cccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc--ccchhhhhchhhheeeEEECCCcc-EEEEe
Confidence 222 35999996 99999998764 368888999999999999999994 55555
Q ss_pred ccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECC
Q psy8285 356 GGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSP 434 (507)
Q Consensus 356 ~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~ 434 (507)
+ .|+.|++||.++|+.+..+.+| ..|..++|+.|.++|++ |+.|.++++||+++.+....+.+|...|.++.|+|
T Consensus 386 S--FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS--~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp 461 (480)
T KOG0271|consen 386 S--FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS--GSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSP 461 (480)
T ss_pred e--cccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE--cCCCceEEEEEeeeeeecccCCCCCceEEEEEecC
Confidence 4 5999999999999999999988 89999999999999999 99999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEe
Q psy8285 435 DQTCVAAASADETISIWN 452 (507)
Q Consensus 435 ~~~~l~s~~~dg~i~iw~ 452 (507)
||+.+++|+.|..+++|.
T Consensus 462 DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 462 DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceeecCCCceEEEeec
Confidence 999999999999999995
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-47 Score=320.35 Aligned_cols=306 Identities=20% Similarity=0.345 Sum_probs=268.3
Q ss_pred ccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC
Q psy8285 163 INDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 163 ~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
.+...|-++.|+|++ +++++.|.++++||+.+..+. ++..+ |...|.|++|+|||+.||++ +.||+|++||..+
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~--~t~Kg-H~~WVlcvawsPDgk~iASG-~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL--FTCKG-HKNWVLCVAWSPDGKKIASG-SKDGSIRLWDPKT 188 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc--eeecC-CccEEEEEEECCCcchhhcc-ccCCeEEEecCCC
Confidence 345568899999987 777889999999999887654 45556 99999999999999999999 9999999999999
Q ss_pred ceeE-EEEeecCccEEEEEe-------eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-
Q psy8285 241 ERLI-QKLRTHMHQVIAMCW-------NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS- 311 (507)
Q Consensus 241 ~~~~-~~~~~~~~~v~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 311 (507)
++++ ..+.+|...|++++| ..++|++++.||.++|||+..+. ....+.+|..+|+|+.|--+| ++++|+
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG~g-liySgS~ 266 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGGEG-LIYSGSQ 266 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcCCc-eEEecCC
Confidence 8765 578899999999999 36799999999999999999875 678899999999999998654 888998
Q ss_pred CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEcc-----------CCC------------------------cEEEEEc
Q psy8285 312 NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCP-----------WEP------------------------TLLATGG 356 (507)
Q Consensus 312 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-----------~~~------------------------~~~~~~~ 356 (507)
|++|++|+...+ .....+.+|...|+.++.+. .+. ..+++++
T Consensus 267 DrtIkvw~a~dG---~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 267 DRTIKVWRALDG---KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred CceEEEEEccch---hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 799999999988 89999999999999998872 222 2467766
Q ss_pred cCCCCeEEEEeCCCC-CeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECC
Q psy8285 357 GICDQTVRLWNSMNG-KEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSP 434 (507)
Q Consensus 357 ~~~d~~i~i~d~~~~-~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~ 434 (507)
. |.++.+|+.... +++..+.+| ..|+.+.||||++++++ ++.|.+|++||.++|+.+.+|++|-..|+.++|+.
T Consensus 344 D--d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IAS--aSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa 419 (480)
T KOG0271|consen 344 D--DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIAS--ASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA 419 (480)
T ss_pred C--CceEEEecccccccchhhhhchhhheeeEEECCCccEEEE--eecccceeeeeCCCcchhhhhhhccceeEEEEecc
Confidence 4 999999997544 477777766 68999999999999999 88999999999999999999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCccccee-ecCCCcceEEeeccCccc
Q psy8285 435 DQTCVAAASADETISIWNCFPRDKKRKAR-QVGSGSSLEFAILKQPVS 481 (507)
Q Consensus 435 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 481 (507)
|.++|++||.|.++++|++.+.+....++ +...+..++|+|+...+.
T Consensus 420 DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 420 DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceee
Confidence 99999999999999999999999888777 666788889999887643
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=334.25 Aligned_cols=308 Identities=40% Similarity=0.778 Sum_probs=291.8
Q ss_pred CCCccccCCchhhhcCCCcccccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeE
Q psy8285 144 KLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDL 223 (507)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 223 (507)
+..|.++..|.+++++|.+.++||.+.++|+..++++++.+..|++|+..+++...+..+ +...|+++.|+++|.+|
T Consensus 156 ~~~r~~~~~p~rvLDaP~l~dDfY~nlldWss~n~laValg~~vylW~~~s~~v~~l~~~---~~~~vtSv~ws~~G~~L 232 (484)
T KOG0305|consen 156 KLKRKIPQTPYRVLDAPGLQDDFYLNLLDWSSANVLAVALGQSVYLWSASSGSVTELCSF---GEELVTSVKWSPDGSHL 232 (484)
T ss_pred cccCcccCChhhhccCCcccccHhhhHhhcccCCeEEEEecceEEEEecCCCceEEeEec---CCCceEEEEECCCCCEE
Confidence 445789999999999999999999999999999999999999999999999998888887 57899999999999999
Q ss_pred EEEeCCCCcEEEEeCCCceeEEEEee-cCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC
Q psy8285 224 AVTNTCTEYIDLWHEQEERLIQKLRT-HMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP 302 (507)
Q Consensus 224 ~~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 302 (507)
+++ ..+|.|.|||..+.+.+..+.+ |...|-+++|++..+.+|+.++.|..+|++..+.....+.+|...|+.++|++
T Consensus 233 avG-~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 233 AVG-TSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred EEe-ecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 999 9999999999999999999998 99999999999999999999999999999988755556889999999999999
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC
Q psy8285 303 NGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS 381 (507)
Q Consensus 303 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 381 (507)
|++++|+|+ |+.+.|||.... .+...+..|.+.|.+++|+|....+|++|+|+.|+.|++||..+++.+..+...+
T Consensus 312 d~~~lASGgnDN~~~Iwd~~~~---~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs 388 (484)
T KOG0305|consen 312 DGNQLASGGNDNVVFIWDGLSP---EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS 388 (484)
T ss_pred CCCeeccCCCccceEeccCCCc---cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC
Confidence 999999999 799999999766 8888899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
.|+++.|++..+.|+++.|..++.|.||++.+.+++..+.+|..+|..++++|||..+++|+.|.++++|++.+..+
T Consensus 389 QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~ 465 (484)
T KOG0305|consen 389 QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDERP 465 (484)
T ss_pred ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCCCC
Confidence 99999999999999999899999999999999999999999999999999999999999999999999999998633
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=302.25 Aligned_cols=437 Identities=16% Similarity=0.248 Sum_probs=313.6
Q ss_pred cccccceeeeeeccCcceeeeccccccccceeeecccCCcce--eeee-cCcccceeeccccccccccCCccCCceeEee
Q psy8285 3 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK--CHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVD 79 (507)
Q Consensus 3 ~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~--~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 79 (507)
.+|...|+-..|||.|-| +|||. ..|+|||||+...+.+ .+++ ..+.|..+.|+.+++.+.... .+.++|...
T Consensus 56 tEH~~~vtVAkySPsG~y-iASGD--~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avG-EGrerfg~~ 131 (603)
T KOG0318|consen 56 TEHAHQVTVAKYSPSGFY-IASGD--VSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVG-EGRERFGHV 131 (603)
T ss_pred ccccceeEEEEeCCCceE-EeecC--CcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEe-cCccceeEE
Confidence 479999999999999987 99999 8999999999875443 3355 589999999999998766543 233333322
Q ss_pred cCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCC-CCCccccCCchhhhc
Q psy8285 80 RSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLG-KLPRKVKAKPERILE 158 (507)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 158 (507)
+.+... .-.-.+.|+. .++.+..-++..|-.....-. ....+....|++.-.
T Consensus 132 ----------F~~DSG--------------~SvGei~GhS---r~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~ 184 (603)
T KOG0318|consen 132 ----------FLWDSG--------------NSVGEITGHS---RRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKS 184 (603)
T ss_pred ----------EEecCC--------------Cccceeeccc---eeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeee
Confidence 111111 0000111111 123322222211111110000 011223344444322
Q ss_pred CCCcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEE
Q psy8285 159 APSIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLW 236 (507)
Q Consensus 159 ~~~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iw 236 (507)
. .-.+..+|+++.|+||+ +++++.||.+.+||-.+++....+.-...|.+.|.+++|+||++.++++ +.|.+++||
T Consensus 185 s-~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~-SaDkt~KIW 262 (603)
T KOG0318|consen 185 S-FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTV-SADKTIKIW 262 (603)
T ss_pred c-ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEe-cCCceEEEE
Confidence 2 22334579999999998 7788999999999999999876665322399999999999999999999 999999999
Q ss_pred eCCCceeEEEEeecC---ccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-C
Q psy8285 237 HEQEERLIQKLRTHM---HQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-N 312 (507)
Q Consensus 237 d~~~~~~~~~~~~~~---~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d 312 (507)
|+.+.++++++.... .....+-|.+..|++.+.+|.|..++..... +...+.+|...|+++..+||+++|++|+ |
T Consensus 263 dVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 263 DVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS-VLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred EeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCC-hhheecccccceeEEEEcCCCCEEEeeccC
Confidence 999999998886432 3445566778899999999999999999987 8889999999999999999999999999 8
Q ss_pred CcEEEEEcCCCCCCCC----------------------------------------------------------------
Q psy8285 313 NTVKIWDFRQLDAKRP---------------------------------------------------------------- 328 (507)
Q Consensus 313 ~~i~i~d~~~~~~~~~---------------------------------------------------------------- 328 (507)
|.|.-||...+...+.
T Consensus 342 G~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred ceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 9999999876511100
Q ss_pred ------eeeecCC--------CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe---eeeeecCCCeEEEEECCC
Q psy8285 329 ------QVNNQCH--------LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE---KCHVKTDSQVTSILWSEQ 391 (507)
Q Consensus 329 ------~~~~~~~--------~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~i~~~~~s~~ 391 (507)
+..+..+ .-...+++++|++. .++.|+. |+.|++|.+..+.. ...+.+.++++.+++|||
T Consensus 422 v~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~-~vaVGG~--Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd 498 (603)
T KOG0318|consen 422 VACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS-EVAVGGQ--DGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPD 498 (603)
T ss_pred EEecCcEEEEecCCcceeeccccccceEEEcCCCC-EEEEecc--cceEEEEEecCCcccceeeeecccCCceEEEECCC
Confidence 0000000 11245678888874 5555655 99999999987553 234455689999999999
Q ss_pred CCeEEEEeccCCCeEEEEeCCCccEEEE-eeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccccee--ecCCC
Q psy8285 392 YRELVTSHGKQDCSLKMWEYPRLHLIEE-LKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR--QVGSG 468 (507)
Q Consensus 392 ~~~l~~~~g~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--~~~~~ 468 (507)
+.||++ +...+.+.+||+.+.+.... ..-|...|.+++|+|+..++|+|+-|-.|.||++..+......+ +...+
T Consensus 499 ~~yla~--~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gV 576 (603)
T KOG0318|consen 499 GAYLAA--GDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGV 576 (603)
T ss_pred CcEEEE--eccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCc
Confidence 999999 88999999999998776433 33499999999999999999999999999999998776653332 44446
Q ss_pred cceEEeeccC
Q psy8285 469 SSLEFAILKQ 478 (507)
Q Consensus 469 ~~~~~~~~~~ 478 (507)
..+.|.-+..
T Consensus 577 n~v~wlde~t 586 (603)
T KOG0318|consen 577 NSVAWLDEST 586 (603)
T ss_pred eeEEEecCce
Confidence 6666654443
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-45 Score=311.01 Aligned_cols=277 Identities=22% Similarity=0.377 Sum_probs=253.6
Q ss_pred ccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccC--CCeEEEEeCCCCcEEEEeC
Q psy8285 163 INDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR--TTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 163 ~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~dg~i~iwd~ 238 (507)
.+...+....+|.++ +++++.+|.+++|+..+.+. +..+.| |...|.++.|+|. +..++++ +.||++++|++
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~--~~~l~g-H~~~v~~~~fhP~~~~~~lat~-s~Dgtvklw~~ 248 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNL--LQTLRG-HTSRVGAAVFHPVDSDLNLATA-SADGTVKLWKL 248 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcce--eEEEec-cccceeeEEEccCCCccceeee-ccCCceeeecc
Confidence 344557778888887 77888999999999988854 455566 9999999999998 5688888 99999999999
Q ss_pred CCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 239 QEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
.+..++..+.+|..+|..++| +|++|++++.|.+-++||++++. ......+|...|.+++|.|||.++++|+ |..-
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~-ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~ 327 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS-ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLG 327 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccch-hhHhhcccccccceeEecCCCceeeccCccchh
Confidence 999999999999999999999 89999999999999999999987 5666789999999999999999999999 8999
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECC-CCC
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSE-QYR 393 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~-~~~ 393 (507)
+|||++++ +++..+.+|..+|.+++|+|+| +.+++|++ |++++|||++..+++..+..| +.|+.+.|+| .|.
T Consensus 328 RvWDlRtg---r~im~L~gH~k~I~~V~fsPNG-y~lATgs~--Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 328 RVWDLRTG---RCIMFLAGHIKEILSVAFSPNG-YHLATGSS--DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred heeecccC---cEEEEecccccceeeEeECCCc-eEEeecCC--CCcEEEeeecccccceecccccchhhheEecccCCe
Confidence 99999999 9999999999999999999999 77777776 999999999999999999988 6799999999 566
Q ss_pred eEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
+|++ ++.|++++||..+++.+++.+.+|.+.|.++..++|++++++++.|.++++|.
T Consensus 402 fL~T--asyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 402 FLVT--ASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEE--cccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 7777 78999999999999999999999999999999999999999999999999995
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=281.87 Aligned_cols=273 Identities=22% Similarity=0.355 Sum_probs=252.4
Q ss_pred ceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc---
Q psy8285 167 YTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE--- 241 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~--- 241 (507)
-|.+++|++|. +++++.||.+.|||..+.+....+.+ ....|..++|+|.|+++|.+ +-|+...||++.+.
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl---~s~WVMtCA~sPSg~~VAcG-GLdN~Csiy~ls~~d~~ 132 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL---PSSWVMTCAYSPSGNFVACG-GLDNKCSIYPLSTRDAE 132 (343)
T ss_pred ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec---CceeEEEEEECCCCCeEEec-CcCceeEEEeccccccc
Confidence 37789999986 88889999999999999888888877 66899999999999999999 99999999999865
Q ss_pred ---eeEEEEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC-CCCEEEEEe-CCcE
Q psy8285 242 ---RLIQKLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP-NGRYLASGS-NNTV 315 (507)
Q Consensus 242 ---~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i 315 (507)
+..+.+.+|.+-+.++.| ++..|++++.|.++.+||+++++ ....+.+|.+.|.+++++| +++.+++|+ |+..
T Consensus 133 g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~-~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~a 211 (343)
T KOG0286|consen 133 GNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ-QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSA 211 (343)
T ss_pred ccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce-EEEEecCCcccEEEEecCCCCCCeEEecccccce
Confidence 345678899999999999 88899999999999999999987 6788999999999999999 999999998 8999
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECCCC
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSEQY 392 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~~~ 392 (507)
++||++.+ .+.+++.+|...|++++|.|+| .-+++|+. |++.++||++..+.+..+.+. .+|++++||..|
T Consensus 212 klWD~R~~---~c~qtF~ghesDINsv~ffP~G-~afatGSD--D~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG 285 (343)
T KOG0286|consen 212 KLWDVRSG---QCVQTFEGHESDINSVRFFPSG-DAFATGSD--DATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG 285 (343)
T ss_pred eeeeccCc---ceeEeecccccccceEEEccCC-CeeeecCC--CceeEEEeecCCcEEeeeccCcccCCceeEEEcccc
Confidence 99999998 9999999999999999999999 56666665 999999999999999988866 579999999999
Q ss_pred CeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 393 RELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 393 ~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
++|++ |..|..+.+||.-.++.+..+.+|.++|.++..+|||..+++||.|..++||.
T Consensus 286 RlLfa--gy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 286 RLLFA--GYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEe--eecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999 88999999999999999999999999999999999999999999999999994
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=295.74 Aligned_cols=276 Identities=21% Similarity=0.352 Sum_probs=245.9
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
...|++++|+.+| ++++..+|.+++|+.... ....+.. |.++|.++.|+.+|.+|+++ +.|+++.+||..+++
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~~tl~~---HkgPI~slKWnk~G~yilS~-~vD~ttilwd~~~g~ 309 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-LISTLGQ---HKGPIFSLKWNKKGTYILSG-GVDGTTILWDAHTGT 309 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCch-hhhhhhc---cCCceEEEEEcCCCCEEEec-cCCccEEEEeccCce
Confidence 3458899999988 555669999999998544 3333333 99999999999999999999 999999999999999
Q ss_pred eEEEEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEc
Q psy8285 243 LIQKLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDF 320 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~ 320 (507)
..+.+..|..+..++.| +...|++++.|+.|+++.+.... +...+.+|.++|.++.|+|.+.+|++++ |++++||.+
T Consensus 310 ~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~ 388 (524)
T KOG0273|consen 310 VKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDR-PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSM 388 (524)
T ss_pred EEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCC-cceeeecccCceEEEEECCCCceEEEecCCCeeEeeec
Confidence 99999999999889999 88899999999999999998765 7888999999999999999999999999 599999998
Q ss_pred CCCCCCCCeeeecCCCCCeeEEEEccCCC--------cEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCC
Q psy8285 321 RQLDAKRPQVNNQCHLSAVKAIAWCPWEP--------TLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQ 391 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~ 391 (507)
... .....+..|...|+.+.|+|.|+ ..+++++- |++|++||+..+.+++.+..| .+|.+++|+|+
T Consensus 389 ~~~---~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~--dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~ 463 (524)
T KOG0273|consen 389 GQS---NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF--DSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPN 463 (524)
T ss_pred CCC---cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec--CCeEEEEEccCCceeEeeccCCCceEEEEecCC
Confidence 887 78888899999999999999763 23444443 999999999999999999555 79999999999
Q ss_pred CCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 392 YRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 392 ~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
|+|+|+ |+.||.|++|+.++++.++.+.+ .+.|..++|+.+|.+|..+-.|+.+++-|++
T Consensus 464 g~ylAs--Gs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 464 GRYLAS--GSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CcEEEe--cCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999 99999999999999999999986 5669999999999999999999999999875
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=269.47 Aligned_cols=248 Identities=18% Similarity=0.265 Sum_probs=215.4
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAM 257 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 257 (507)
.+|++....|++||+.+++...+.++++ |...|+++.|..+|+.++++ ++||+++|||++...+.+.++ |..+|+++
T Consensus 54 ~LAaa~~qhvRlyD~~S~np~Pv~t~e~-h~kNVtaVgF~~dgrWMyTg-seDgt~kIWdlR~~~~qR~~~-~~spVn~v 130 (311)
T KOG0315|consen 54 DLAAAGNQHVRLYDLNSNNPNPVATFEG-HTKNVTAVGFQCDGRWMYTG-SEDGTVKIWDLRSLSCQRNYQ-HNSPVNTV 130 (311)
T ss_pred hhhhccCCeeEEEEccCCCCCceeEEec-cCCceEEEEEeecCeEEEec-CCCceEEEEeccCcccchhcc-CCCCcceE
Confidence 5666777899999999999888888888 99999999999999999999 999999999999966555554 77999999
Q ss_pred Ee--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCC---CCCCCeee
Q psy8285 258 CW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQL---DAKRPQVN 331 (507)
Q Consensus 258 ~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~---~~~~~~~~ 331 (507)
.. +...|++|..+|.|++||+................|.++...|||.+++.+.+ |..++|++-.. ....++..
T Consensus 131 vlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k 210 (311)
T KOG0315|consen 131 VLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHK 210 (311)
T ss_pred EecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhh
Confidence 98 67789999999999999999876555556666788999999999999999997 99999998764 23456777
Q ss_pred ecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC-CeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEE
Q psy8285 332 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG-KEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMW 409 (507)
Q Consensus 332 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~ 409 (507)
++.|.+.+..+.+||++++|.++++ |.+++||+.++. +....+.++ ..+..++||.||+||++ |+.|+.+++|
T Consensus 211 ~~ah~~~il~C~lSPd~k~lat~ss---dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvT--assd~~~rlW 285 (311)
T KOG0315|consen 211 FQAHNGHILRCLLSPDVKYLATCSS---DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVT--ASSDHTARLW 285 (311)
T ss_pred eecccceEEEEEECCCCcEEEeecC---CceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEe--cCCCCceeec
Confidence 8899999999999999976666665 999999999887 555566666 68999999999999999 8899999999
Q ss_pred eCCCccEEEEeeccccceeEEEEC
Q psy8285 410 EYPRLHLIEELKIHQERILSAVLS 433 (507)
Q Consensus 410 d~~~~~~~~~~~~~~~~i~~~~~s 433 (507)
++..++.+....+|.....+++..
T Consensus 286 ~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 286 DLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred ccccCceeeecCCcccccEEEEee
Confidence 999999999999998877776653
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=299.81 Aligned_cols=281 Identities=21% Similarity=0.325 Sum_probs=255.0
Q ss_pred ccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeecCC
Q psy8285 4 CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDRSS 82 (507)
Q Consensus 4 gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 82 (507)
|-+.+|..+.||+|++. ||||| .+|.+++|+..++..++++. |.+.|..+.|.|..+
T Consensus 173 gd~rPis~~~fS~ds~~-laT~s--wsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~------------------- 230 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKH-LATGS--WSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDS------------------- 230 (459)
T ss_pred cCCCcceeeEeecCCCe-EEEee--cCCceeEeecCCcceeEEEeccccceeeEEEccCCC-------------------
Confidence 55789999999999986 99999 89999999999999999888 777777777764321
Q ss_pred ccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCCCc
Q psy8285 83 YDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSI 162 (507)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (507)
T Consensus 231 -------------------------------------------------------------------------------- 230 (459)
T KOG0272|consen 231 -------------------------------------------------------------------------------- 230 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 163 INDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 163 ~~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
...+++++.||.+++|++.+... +.++.| |...|..++|+|+|++|+++ +.|.+-++||+.++.
T Consensus 231 ------------~~~lat~s~Dgtvklw~~~~e~~--l~~l~g-H~~RVs~VafHPsG~~L~Ta-sfD~tWRlWD~~tk~ 294 (459)
T KOG0272|consen 231 ------------DLNLATASADGTVKLWKLSQETP--LQDLEG-HLARVSRVAFHPSGKFLGTA-SFDSTWRLWDLETKS 294 (459)
T ss_pred ------------ccceeeeccCCceeeeccCCCcc--hhhhhc-chhhheeeeecCCCceeeec-ccccchhhcccccch
Confidence 01277889999999999987654 455666 99999999999999999999 999999999999999
Q ss_pred eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8285 243 LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d 319 (507)
.+....+|...|.+++| ||.++++|+.|..-+|||++++. ....+.+|..+|.+++|+|+|..+|+|+ |++++|||
T Consensus 295 ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWD 373 (459)
T KOG0272|consen 295 ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR-CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWD 373 (459)
T ss_pred hhHhhcccccccceeEecCCCceeeccCccchhheeecccCc-EEEEecccccceeeEeECCCceEEeecCCCCcEEEee
Confidence 99899999999999999 89999999999999999999997 6778899999999999999999999999 79999999
Q ss_pred cCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEE
Q psy8285 320 FRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTS 398 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~ 398 (507)
++.. ..+.++.+|.+-|+.+.|+|+..+++++++ +|+++++|..++..+++.+.+| +.|.++.+++++.++++
T Consensus 374 LR~r---~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas--yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t- 447 (459)
T KOG0272|consen 374 LRMR---SELYTIPAHSNLVSQVKYSPQEGYFLVTAS--YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIAT- 447 (459)
T ss_pred eccc---ccceecccccchhhheEecccCCeEEEEcc--cCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEE-
Confidence 9987 779999999999999999997778888887 4999999999999999999988 78999999999999999
Q ss_pred eccCCCeEEEEe
Q psy8285 399 HGKQDCSLKMWE 410 (507)
Q Consensus 399 ~g~~d~~i~v~d 410 (507)
++.|.++++|.
T Consensus 448 -~s~DRT~KLW~ 458 (459)
T KOG0272|consen 448 -SSFDRTIKLWR 458 (459)
T ss_pred -eccCceeeecc
Confidence 78999999995
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=302.34 Aligned_cols=390 Identities=20% Similarity=0.325 Sum_probs=304.9
Q ss_pred ccceeeeeeccCcceeeeccccccccceeeecccCC--------cceeeee-cCcccceeeccccccccccCCccCCcee
Q psy8285 6 LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG--------KEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRY 76 (507)
Q Consensus 6 ~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g--------~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~ 76 (507)
+.+|.||.|||||+. +|.|. ...+.||..-.. .+.+++. |...|.++.|+.|.+.+.+..
T Consensus 96 k~~v~~i~fSPng~~-fav~~---gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gs------- 164 (893)
T KOG0291|consen 96 KRGVGAIKFSPNGKF-FAVGC---GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGS------- 164 (893)
T ss_pred cCccceEEECCCCcE-EEEEe---cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEecc-------
Confidence 678999999999996 88776 799999976332 2333433 678899999998887655431
Q ss_pred EeecCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhh
Q psy8285 77 VVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERI 156 (507)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (507)
.|...+.+.+... +......+.|+.
T Consensus 165 ------rD~s~rl~~v~~~------------k~~~~~~l~gHk------------------------------------- 189 (893)
T KOG0291|consen 165 ------RDLSARLFGVDGN------------KNLFTYALNGHK------------------------------------- 189 (893)
T ss_pred ------ccceEEEEEeccc------------cccceEeccCCC-------------------------------------
Confidence 2222222222211 111111111111
Q ss_pred hcCCCcccccceeeeeeCCCC--EEEEEcCCeEEEEECCC-----------------------Cce---------eEEEe
Q psy8285 157 LEAPSIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKT-----------------------NKT---------QLLVE 202 (507)
Q Consensus 157 ~~~~~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~-----------------------~~~---------~~~~~ 202 (507)
-+|.+.-|..+. +++++.||.+.+|.... ++. .+..-
T Consensus 190 ---------d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ 260 (893)
T KOG0291|consen 190 ---------DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHY 260 (893)
T ss_pred ---------cceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeee
Confidence 122223333333 88999999999998761 111 00111
Q ss_pred cCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEee--CCEEEEEecC-CeEEEEECC
Q psy8285 203 YPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCGTIG-GNILHYDVR 279 (507)
Q Consensus 203 ~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d-g~i~i~d~~ 279 (507)
+.. ....+++.+|++....|+++ -..|...+|++....+++.+.-...+|..++|+ |+.|+.|+.. |.+.||+..
T Consensus 261 ln~-~~~kvtaa~fH~~t~~lvvg-FssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq 338 (893)
T KOG0291|consen 261 LNQ-NSSKVTAAAFHKGTNLLVVG-FSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ 338 (893)
T ss_pred ecc-cccceeeeeccCCceEEEEE-ecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEee
Confidence 111 34789999999998889888 999999999999999999999888999999996 9999998865 899999999
Q ss_pred CCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccC
Q psy8285 280 THSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGI 358 (507)
Q Consensus 280 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 358 (507)
+.. .....++|...+.+++++|||+++|+|+ ||.|++||...+ -++.++..|...|+.+.|+..++.++.++
T Consensus 339 sEs-YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg---fC~vTFteHts~Vt~v~f~~~g~~llssS--- 411 (893)
T KOG0291|consen 339 SES-YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG---FCFVTFTEHTSGVTAVQFTARGNVLLSSS--- 411 (893)
T ss_pred ccc-eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc---eEEEEeccCCCceEEEEEEecCCEEEEee---
Confidence 865 5667789999999999999999999999 599999999998 89999999999999999999996666544
Q ss_pred CCCeEEEEeCCCCCeeeeeecCC--CeEEEEECCCCCeEEEEeccCCC-eEEEEeCCCccEEEEeeccccceeEEEECCC
Q psy8285 359 CDQTVRLWNSMNGKEKCHVKTDS--QVTSILWSEQYRELVTSHGKQDC-SLKMWEYPRLHLIEELKIHQERILSAVLSPD 435 (507)
Q Consensus 359 ~d~~i~i~d~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~g~~d~-~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~ 435 (507)
+||+|+.||+...+..+++..+. +..+++..|.|..+++ |+.|. .|++|++++|+.+-.+.+|.++|.+++|+|+
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~A--G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCA--GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD 489 (893)
T ss_pred cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEe--eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence 49999999999999999998774 5788999999999988 66665 7999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCCc-ccceeecCCCcceEEeeccCccc
Q psy8285 436 QTCVAAASADETISIWNCFPRDK-KRKARQVGSGSSLEFAILKQPVS 481 (507)
Q Consensus 436 ~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 481 (507)
+..|+++|.|.+|++|++..... ...++....+..+.+.|+...+.
T Consensus 490 ~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 490 GSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELA 536 (893)
T ss_pred cCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEE
Confidence 99999999999999999987643 44566667777888888777653
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=302.86 Aligned_cols=436 Identities=16% Similarity=0.245 Sum_probs=303.2
Q ss_pred cccccceeeeeeccCcceeeeccccccccceeeecccCCcceee--ee-cCcccceeeccccccccccCCccCCceeEee
Q psy8285 3 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH--VK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVD 79 (507)
Q Consensus 3 ~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~--~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 79 (507)
.||-+.|++|.||.|.+. |++|+ .|.++|||.+...+-+.. +. |...|.++.|..+...+.+.. .|..+.+
T Consensus 142 ~g~fddi~si~Ws~DSr~-l~~gs--rD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvs---kdG~l~~ 215 (893)
T KOG0291|consen 142 LGHFDDITSIDWSDDSRL-LVTGS--RDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVS---KDGALFV 215 (893)
T ss_pred cCCccceeEEEeccCCce-EEecc--ccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEe---cCceEEE
Confidence 489999999999999886 89998 899999999987766433 33 788899999988877654432 2223333
Q ss_pred cCCccccccccccccc---ccc----Cc-hhHHHHHHhhhhhhcccccc----cccceeEecCCC-CCcccccccCCCCC
Q psy8285 80 RSSYDSLCSHYLLQQA---NDE----TI-SYREQKKRRHLSFLLHGFEI----DRKKVLNQSKRT-VSPTQFLRTLGKLP 146 (507)
Q Consensus 80 ~~~~~~~~~~~~~~~~---~~~----~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~ 146 (507)
|... .+.....+. +++ .. .-......+.......-+.. .+...-.|+... .-..+. ....
T Consensus 216 W~~~---~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgF----ssG~ 288 (893)
T KOG0291|consen 216 WTCD---LRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGF----SSGE 288 (893)
T ss_pred EEec---CCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEe----cCCe
Confidence 2111 000000000 000 00 00000000000000000000 000011111100 000000 0000
Q ss_pred ccccCCchhhhcCCCcccccceeeeeeCCCC-EEEEEcC--CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeE
Q psy8285 147 RKVKAKPERILEAPSIINDFYTSGLDWGYHD-TLAVALD--TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDL 223 (507)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~~~~~~--~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 223 (507)
-.+-.-|+-.+-...-..+..|..+.|+..| .+|.+.. |++.+|+.++... +++.++ |...+++++++|||+++
T Consensus 289 f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY--VlKQQg-H~~~i~~l~YSpDgq~i 365 (893)
T KOG0291|consen 289 FGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY--VLKQQG-HSDRITSLAYSPDGQLI 365 (893)
T ss_pred eEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce--eeeccc-cccceeeEEECCCCcEE
Confidence 0011111111111111123446778888777 6665543 5999999987664 445556 99999999999999999
Q ss_pred EEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEc
Q psy8285 224 AVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWS 301 (507)
Q Consensus 224 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 301 (507)
++| +.||.|+|||...+-++.++..|...|+.+.| .++.+++++-||+|+.||+..................|++..
T Consensus 366 aTG-~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD 444 (893)
T KOG0291|consen 366 ATG-AEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVD 444 (893)
T ss_pred Eec-cCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEc
Confidence 999 99999999999999999999999999999999 799999999999999999988763333333444567889999
Q ss_pred CCCCEEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC-Ceeeeee
Q psy8285 302 PNGRYLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG-KEKCHVK 378 (507)
Q Consensus 302 ~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~ 378 (507)
|.|.++.+|+ | -.|++|+++++ +.+..+.+|+++|.+++|+|++. ++++++ .|++|++||+-.. ....++.
T Consensus 445 ~sGelV~AG~~d~F~IfvWS~qTG---qllDiLsGHEgPVs~l~f~~~~~-~LaS~S--WDkTVRiW~if~s~~~vEtl~ 518 (893)
T KOG0291|consen 445 PSGELVCAGAQDSFEIFVWSVQTG---QLLDILSGHEGPVSGLSFSPDGS-LLASGS--WDKTVRIWDIFSSSGTVETLE 518 (893)
T ss_pred CCCCEEEeeccceEEEEEEEeecC---eeeehhcCCCCcceeeEEccccC-eEEecc--ccceEEEEEeeccCceeeeEe
Confidence 9999999998 7 89999999999 89999999999999999999995 677765 5999999998554 4556777
Q ss_pred cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec--------------------cccceeEEEECCCCCE
Q psy8285 379 TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI--------------------HQERILSAVLSPDQTC 438 (507)
Q Consensus 379 ~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~--------------------~~~~i~~~~~s~~~~~ 438 (507)
....+..++|+|+|+.|++ ..-||.|.+||...+.++..+.+ .....+.+++++||.+
T Consensus 519 i~sdvl~vsfrPdG~elaV--aTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~ 596 (893)
T KOG0291|consen 519 IRSDVLAVSFRPDGKELAV--ATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKC 596 (893)
T ss_pred eccceeEEEEcCCCCeEEE--EEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCE
Confidence 7789999999999999999 67899999999987666544322 1246889999999999
Q ss_pred EEEEeCCCcEEEEecCCCCccccee
Q psy8285 439 VAAASADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 439 l~s~~~dg~i~iw~~~~~~~~~~~~ 463 (507)
+++|+....|++|++.++-.+++.+
T Consensus 597 IlAgG~sn~iCiY~v~~~vllkkfq 621 (893)
T KOG0291|consen 597 ILAGGESNSICIYDVPEGVLLKKFQ 621 (893)
T ss_pred EEecCCcccEEEEECchhheeeeEE
Confidence 9999999999999999887776654
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=304.42 Aligned_cols=385 Identities=20% Similarity=0.313 Sum_probs=301.7
Q ss_pred cccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeecCCc
Q psy8285 5 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDRSSY 83 (507)
Q Consensus 5 H~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 83 (507)
|+++|.-|+|+|.| .|||+|+ .|+.|++||+..+.++..|+ +++.|.++.|.|+-...... ....
T Consensus 104 He~Pvi~ma~~~~g-~LlAtgg--aD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~-----------sg~~ 169 (775)
T KOG0319|consen 104 HEAPVITMAFDPTG-TLLATGG--ADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLA-----------SGAT 169 (775)
T ss_pred cCCCeEEEEEcCCC-ceEEecc--ccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhhee-----------ecCC
Confidence 99999999999998 5799999 99999999999999999999 79999999999877541110 1133
Q ss_pred cccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCCCcc
Q psy8285 84 DSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSII 163 (507)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (507)
|..++.|++... +. +...+ ..
T Consensus 170 D~~v~vwnl~~~------------~t-cl~~~----------------------------------------------~~ 190 (775)
T KOG0319|consen 170 DGTVRVWNLNDK------------RT-CLHTM----------------------------------------------IL 190 (775)
T ss_pred CceEEEEEcccC------------ch-HHHHH----------------------------------------------Hh
Confidence 344444444432 00 00000 01
Q ss_pred cccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccC-----CCeEEEEeCCCCcEEEE
Q psy8285 164 NDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR-----TTDLAVTNTCTEYIDLW 236 (507)
Q Consensus 164 ~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~~dg~i~iw 236 (507)
+...++++++++|+ +++++.|..+.+||+...+..++.. -...+.++.+-++ +.+++++ +.+|.+++|
T Consensus 191 H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp----~ye~~E~vv~l~~~~~~~~~~~~Ta-G~~g~~~~~ 265 (775)
T KOG0319|consen 191 HKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLP----LYESLESVVRLREELGGKGEYIITA-GGSGVVQYW 265 (775)
T ss_pred hhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheec----hhhheeeEEEechhcCCcceEEEEe-cCCceEEEE
Confidence 12236788888876 8999999999999997666554444 3445777777776 6688888 888888888
Q ss_pred eCCCcee-------------------------------------------EEEEeecCccEEEEEe---eCCEEEEEecC
Q psy8285 237 HEQEERL-------------------------------------------IQKLRTHMHQVIAMCW---NGNLLSCGTIG 270 (507)
Q Consensus 237 d~~~~~~-------------------------------------------~~~~~~~~~~v~~~~~---~~~~l~~~~~d 270 (507)
|..++++ .+.+-+....|.+++| ..++++.++..
T Consensus 266 d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs 345 (775)
T KOG0319|consen 266 DSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNS 345 (775)
T ss_pred ecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCC
Confidence 8764422 1223356677899999 46899999999
Q ss_pred CeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCC-CCCCCeeeecCCCCCeeEEEEccCC
Q psy8285 271 GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQL-DAKRPQVNNQCHLSAVKAIAWCPWE 348 (507)
Q Consensus 271 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~ 348 (507)
+.+++|++.+.. ...+.+|...|.++....+|-+|++|+ |.++++|.++++ ....++....+|.+.|.+++++..+
T Consensus 346 ~~lr~y~~~~~~--c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~ 423 (775)
T KOG0319|consen 346 PELRLYTLPTSY--CQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG 423 (775)
T ss_pred CceEEEecCCCc--eEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccC
Confidence 999999988765 558999999999999777888999999 799999998543 2234566778899999999999988
Q ss_pred CcEEEEEccCCCCeEEEEeCCCCCee---eee-------ecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEE
Q psy8285 349 PTLLATGGGICDQTVRLWNSMNGKEK---CHV-------KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIE 418 (507)
Q Consensus 349 ~~~~~~~~~~~d~~i~i~d~~~~~~~---~~~-------~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~ 418 (507)
..++++++. |+++++|++...+.. ..+ .+...|++++++|+.+.+++ |+.|.+.+||+++..+.+.
T Consensus 424 asffvsvS~--D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT--~SqDktaKiW~le~~~l~~ 499 (775)
T KOG0319|consen 424 ASFFVSVSQ--DCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT--GSQDKTAKIWDLEQLRLLG 499 (775)
T ss_pred ccEEEEecC--CceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe--cccccceeeecccCceEEE
Confidence 889999887 999999999773211 111 23468999999999999999 9999999999999999999
Q ss_pred EeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccccee-ecCCCcceEE
Q psy8285 419 ELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR-QVGSGSSLEF 473 (507)
Q Consensus 419 ~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~ 473 (507)
.+.+|...|+++.|+|..+.++|+|.|++|+||.+.+....+.+. +...+....|
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F 555 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASF 555 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeee
Confidence 999999999999999999999999999999999999999988876 3333333333
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=308.82 Aligned_cols=431 Identities=17% Similarity=0.209 Sum_probs=306.7
Q ss_pred CCcccccceeeeeeccCcce-eeeccccccccceeeecccCCcc-eeeee-cCcccceeeccccccccccCCccCCceeE
Q psy8285 1 NNQCHLSAVKAIAWCPWEPT-LLATGGGICDQTVRLWNSMNGKE-KCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYV 77 (507)
Q Consensus 1 ~l~gH~~~V~~l~fsp~g~~-llasg~~~~d~~i~iWd~~~g~~-~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~ 77 (507)
+|+||-+.|.++.|.|+-++ ||++|. .|++|++||..++.. +.+.. |.+.|+++.|++++..+.+ .+.|..+
T Consensus 142 ~fkG~gGvVssl~F~~~~~~~lL~sg~--~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls---~~RDkvi 216 (775)
T KOG0319|consen 142 SFKGHGGVVSSLLFHPHWNRWLLASGA--TDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLS---VGRDKVI 216 (775)
T ss_pred EecCCCceEEEEEeCCccchhheeecC--CCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEE---eccCcEE
Confidence 48899999999999998655 788888 899999999996654 66655 8999999999999765544 3455666
Q ss_pred eecCCccccccccccccccccCch------hHHHHHH-hhhhhhcccccccccceeEecCCC-----CCccccc----cc
Q psy8285 78 VDRSSYDSLCSHYLLQQANDETIS------YREQKKR-RHLSFLLHGFEIDRKKVLNQSKRT-----VSPTQFL----RT 141 (507)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----~~ 141 (507)
-+| ++..+.....-..-.+ ..+...+ +...... .+.+..+.|...+.. ..+.+.. ..
T Consensus 217 ~vw-----d~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~Ta--G~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~ 289 (775)
T KOG0319|consen 217 IVW-----DLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITA--GGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLA 289 (775)
T ss_pred EEe-----ehhhhhhhheechhhheeeEEEechhcCCcceEEEEe--cCCceEEEEecccchhhhhhccCCchhhhccee
Confidence 553 2222221111000000 0000000 0000000 011122222211111 1111000 00
Q ss_pred CCCCCccccC-Cchh--hhcCCC-------cccccceeeeeeC-CC-C-EEEEEcCCeEEEEECCCCceeEEEecCCCCC
Q psy8285 142 LGKLPRKVKA-KPER--ILEAPS-------IINDFYTSGLDWG-YH-D-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDN 208 (507)
Q Consensus 142 ~~~~~~~~~~-~~~~--~~~~~~-------~~~~~~i~~~~~s-~~-~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~ 208 (507)
.....+.+.. .... .++... ....-.|..+.+- |+ . ++.++..+.+++|+..+.... -++| |.
T Consensus 290 ~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---ii~G-H~ 365 (775)
T KOG0319|consen 290 IESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---IIPG-HT 365 (775)
T ss_pred ccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---EEeC-ch
Confidence 0000111000 0000 000011 0111123445543 33 2 555678899999998877665 3455 99
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc----eeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCC
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE----RLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTH 281 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~ 281 (507)
+.|.++....+|.+|+++ +.|.++++|.++++ -++....+|...|.++++ ....|++++.|+++++|++...
T Consensus 366 e~vlSL~~~~~g~llat~-sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s 444 (775)
T KOG0319|consen 366 EAVLSLDVWSSGDLLATG-SKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKS 444 (775)
T ss_pred hheeeeeecccCcEEEEe-cCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCc
Confidence 999999966677788888 99999999987443 245566789999999999 3679999999999999999872
Q ss_pred Cc--C------ceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEE
Q psy8285 282 SD--Y------PTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLL 352 (507)
Q Consensus 282 ~~--~------~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 352 (507)
+. . ......|...|+|++++|+.+++|+|+ |.+.+||++++. ....++.+|...|.++.|+|.. +++
T Consensus 445 ~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~---~l~~vLsGH~RGvw~V~Fs~~d-q~l 520 (775)
T KOG0319|consen 445 KETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL---RLLGVLSGHTRGVWCVSFSKND-QLL 520 (775)
T ss_pred ccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc---eEEEEeeCCccceEEEEecccc-cee
Confidence 21 1 113457899999999999999999999 799999999976 8899999999999999999987 677
Q ss_pred EEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEE
Q psy8285 353 ATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 431 (507)
Q Consensus 353 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~ 431 (507)
+++++ |++|+||.+.+..+++++.+| ..|..+.|-.+|+.|++ ++.||.|++|++++.+++.++..|...|++++
T Consensus 521 aT~Sg--D~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS--~~adGliKlWnikt~eC~~tlD~H~DrvWaL~ 596 (775)
T KOG0319|consen 521 ATCSG--DKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLIS--AGADGLIKLWNIKTNECEMTLDAHNDRVWALS 596 (775)
T ss_pred EeccC--CceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEe--ccCCCcEEEEeccchhhhhhhhhccceeEEEe
Confidence 77776 999999999999999999988 78999999999999999 77899999999999999999999999999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 432 LSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 432 ~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
-+|....++||+.||.|.+|.=.+.
T Consensus 597 ~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 597 VSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred ecCccceeEecCCCeEEEEeecCcH
Confidence 9999999999999999999976554
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=262.73 Aligned_cols=275 Identities=20% Similarity=0.343 Sum_probs=235.7
Q ss_pred ceeeeeeCCC---CEEEEEcCCeEEEEECCCCcee---EEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC
Q psy8285 167 YTSGLDWGYH---DTLAVALDTSVYTWNTKTNKTQ---LLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 167 ~i~~~~~s~~---~~~~~~~~~~i~iw~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
.|..++..+. -++.++.|..+.+|++...... ....+.| |...|..+..+++|++.+++ +.|+.+++||+.+
T Consensus 17 ~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~~alS~-swD~~lrlWDl~~ 94 (315)
T KOG0279|consen 17 WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGNFALSA-SWDGTLRLWDLAT 94 (315)
T ss_pred eEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCceEEec-cccceEEEEEecC
Confidence 3555555554 3778889999999998764332 2455667 99999999999999999999 9999999999999
Q ss_pred ceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeec--CCCceEEEEEcCC--CCEEEEEe-CC
Q psy8285 241 ERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITR--EGDVVCGLKWSPN--GRYLASGS-NN 313 (507)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~--~~~l~~~~-d~ 313 (507)
++..+.+.+|...|.+++| |++.+++|+.|.+|.+|+..... ...+.. +.+.|.|+.|+|+ ..+|++++ |+
T Consensus 95 g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c--k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk 172 (315)
T KOG0279|consen 95 GESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC--KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDK 172 (315)
T ss_pred CcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE--EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCc
Confidence 9999999999999999999 78999999999999999998754 333332 3789999999998 67888888 79
Q ss_pred cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCC
Q psy8285 314 TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYR 393 (507)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~ 393 (507)
+|++||+++. +....+.+|.+.++.+++|||| .+.++|+. ||.+.+||++.++.++.+.+...|.+++|+|+..
T Consensus 173 tvKvWnl~~~---~l~~~~~gh~~~v~t~~vSpDG-slcasGgk--dg~~~LwdL~~~k~lysl~a~~~v~sl~fspnry 246 (315)
T KOG0279|consen 173 TVKVWNLRNC---QLRTTFIGHSGYVNTVTVSPDG-SLCASGGK--DGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRY 246 (315)
T ss_pred eEEEEccCCc---chhhccccccccEEEEEECCCC-CEEecCCC--CceEEEEEccCCceeEeccCCCeEeeEEecCCce
Confidence 9999999997 7888899999999999999999 67777775 9999999999999999999999999999999988
Q ss_pred eEEEEeccCCCeEEEEeCCCccEEEEeec----c-----ccceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKI----H-----QERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~~~~~~~~~~----~-----~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
.|+.+ .+..|+|||+.++..+.+++. . .....+++|++||+.|++|-.|+.|++|.+.
T Consensus 247 wL~~a---t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 247 WLCAA---TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eEeec---cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 88873 355699999999888776642 1 2335678999999999999999999999875
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=256.87 Aligned_cols=271 Identities=18% Similarity=0.315 Sum_probs=233.8
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce--eEEEEeecCccEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER--LIQKLRTHMHQVI 255 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~ 255 (507)
+++++.|.+|++|...+|.....++. .+..|..+...|+++.||++ ....|++||+++++ ++.++.+|...|+
T Consensus 13 LvsA~YDhTIRfWqa~tG~C~rTiqh---~dsqVNrLeiTpdk~~LAaa--~~qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGICSRTIQH---PDSQVNRLEITPDKKDLAAA--GNQHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred EEeccCcceeeeeehhcCeEEEEEec---CccceeeEEEcCCcchhhhc--cCCeeEEEEccCCCCCceeEEeccCCceE
Confidence 56678999999999999998877775 67889999999999999987 57789999999875 5889999999999
Q ss_pred EEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeee
Q psy8285 256 AMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNN 332 (507)
Q Consensus 256 ~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~ 332 (507)
++.| +|+.+++|++||+++|||++... ......+..+|+++..+|+...|++|. +|.|++||+... .+...+
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~---~c~~~l 162 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN---SCTHEL 162 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC---cccccc
Confidence 9999 89999999999999999999854 445556779999999999999999999 499999999976 333332
Q ss_pred -cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC------eeeeeecC-CCeEEEEECCCCCeEEEEeccCCC
Q psy8285 333 -QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK------EKCHVKTD-SQVTSILWSEQYRELVTSHGKQDC 404 (507)
Q Consensus 333 -~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~ 404 (507)
......|.++...|||..+++... .|+.++|++-+.. ++..++.+ +.+..+.+|||+++|++ .+.|.
T Consensus 163 iPe~~~~i~sl~v~~dgsml~a~nn---kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat--~ssdk 237 (311)
T KOG0315|consen 163 IPEDDTSIQSLTVMPDGSMLAAANN---KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLAT--CSSDK 237 (311)
T ss_pred CCCCCcceeeEEEcCCCcEEEEecC---CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEe--ecCCc
Confidence 234568999999999977776554 8999999987653 44555555 67999999999999999 78899
Q ss_pred eEEEEeCCCc-cEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccccee
Q psy8285 405 SLKMWEYPRL-HLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 405 ~i~v~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 463 (507)
+++||+..+. +....+.+|...+++.+||.||+||++++.|+.+++|++..++.++...
T Consensus 238 tv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 238 TVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred eEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecC
Confidence 9999999987 6677889999999999999999999999999999999999998777644
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=261.70 Aligned_cols=279 Identities=18% Similarity=0.332 Sum_probs=238.3
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeeec-CcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT-DSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~~-~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|+||.+.|.+|.|++|+++ |+|+| .||.+.|||..+...+..++. ..-
T Consensus 51 LkGH~~Ki~~~~ws~Dsr~-ivSaS--qDGklIvWDs~TtnK~haipl~s~W---------------------------- 99 (343)
T KOG0286|consen 51 LKGHLNKIYAMDWSTDSRR-IVSAS--QDGKLIVWDSFTTNKVHAIPLPSSW---------------------------- 99 (343)
T ss_pred ecccccceeeeEecCCcCe-EEeec--cCCeEEEEEcccccceeEEecCcee----------------------------
Confidence 7999999999999999997 88888 899999999988776654442 222
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 100 -------------------------------------------------------------------------------- 99 (343)
T KOG0286|consen 100 -------------------------------------------------------------------------------- 99 (343)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC-EEE-EEcCCeEEEEECCCC----ceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEE
Q psy8285 161 SIINDFYTSGLDWGYHD-TLA-VALDTSVYTWNTKTN----KTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYID 234 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~-~~~-~~~~~~i~iw~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~ 234 (507)
|...+|+|.+ ++| ++.|+...||++.+. .......+.+ |.+.+.|+.|.+| ..|+++ +.|.+..
T Consensus 100 -------VMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~g-HtgylScC~f~dD-~~ilT~-SGD~TCa 169 (343)
T KOG0286|consen 100 -------VMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAG-HTGYLSCCRFLDD-NHILTG-SGDMTCA 169 (343)
T ss_pred -------EEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecC-ccceeEEEEEcCC-CceEec-CCCceEE
Confidence 3345666665 444 468999999999853 3344556777 9999999999985 578888 9999999
Q ss_pred EEeCCCceeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe
Q psy8285 235 LWHEQEERLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS 311 (507)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 311 (507)
+||+++++.+..+.+|.+.|.++++ +++.+++|+-|+..++||++.+. ..+.+.+|...|++++|.|+|.-+++|+
T Consensus 170 lWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF~ghesDINsv~ffP~G~afatGS 248 (343)
T KOG0286|consen 170 LWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHESDINSVRFFPSGDAFATGS 248 (343)
T ss_pred EEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-eeEeecccccccceEEEccCCCeeeecC
Confidence 9999999999999999999999998 68999999999999999999985 7889999999999999999999999999
Q ss_pred C-CcEEEEEcCCCCCCCCeeeec--CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEE
Q psy8285 312 N-NTVKIWDFRQLDAKRPQVNNQ--CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSIL 387 (507)
Q Consensus 312 d-~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~ 387 (507)
| ++.++||++.. +.+..+. .-..+|++++||..|+.+++ +.. |.++.+||.-.++.+..+.+| +.|.++.
T Consensus 249 DD~tcRlyDlRaD---~~~a~ys~~~~~~gitSv~FS~SGRlLfa-gy~--d~~c~vWDtlk~e~vg~L~GHeNRvScl~ 322 (343)
T KOG0286|consen 249 DDATCRLYDLRAD---QELAVYSHDSIICGITSVAFSKSGRLLFA-GYD--DFTCNVWDTLKGERVGVLAGHENRVSCLG 322 (343)
T ss_pred CCceeEEEeecCC---cEEeeeccCcccCCceeEEEcccccEEEe-eec--CCceeEeeccccceEEEeeccCCeeEEEE
Confidence 5 99999999987 5555554 23458999999999955555 443 999999999999999988887 7999999
Q ss_pred ECCCCCeEEEEeccCCCeEEEEe
Q psy8285 388 WSEQYRELVTSHGKQDCSLKMWE 410 (507)
Q Consensus 388 ~s~~~~~l~~~~g~~d~~i~v~d 410 (507)
.+|||.-+++ |+.|..++||.
T Consensus 323 ~s~DG~av~T--gSWDs~lriW~ 343 (343)
T KOG0286|consen 323 VSPDGMAVAT--GSWDSTLRIWA 343 (343)
T ss_pred ECCCCcEEEe--cchhHheeecC
Confidence 9999999999 99999999994
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=293.39 Aligned_cols=279 Identities=20% Similarity=0.295 Sum_probs=244.8
Q ss_pred cccceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 164 NDFYTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 164 ~~~~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
+...|.++++|.+. +++.+.++.+++|+..+.+..+.+. .+.+.+..|.|.++++++| ...|.+.+||+....
T Consensus 372 HR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~-----~~y~l~~~Fvpgd~~Iv~G-~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT-----CGYILASKFVPGDRYIVLG-TKNGELQVFDLASAS 445 (888)
T ss_pred chhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEec-----cccEEEEEecCCCceEEEe-ccCCceEEEEeehhh
Confidence 34458899999998 5555688999999999888776664 3489999999999999999 999999999999999
Q ss_pred eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc----Cce-------eeecCCCceEEEEEcCCCCEEEE
Q psy8285 243 LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD----YPT-------AITREGDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~----~~~-------~~~~~~~~v~~~~~~~~~~~l~~ 309 (507)
.+.+++.|.+.+++++. |+..+++|+.|.+|++||..-... ..+ ........|.|+++|||+++|++
T Consensus 446 l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV 525 (888)
T KOG0306|consen 446 LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV 525 (888)
T ss_pred hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE
Confidence 99999999999999998 899999999999999999752111 111 12234567999999999999999
Q ss_pred Ee-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEE
Q psy8285 310 GS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSIL 387 (507)
Q Consensus 310 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~ 387 (507)
+- |++|++|-+.+. +....+-+|.-||.|+..+||+ .++++++. |++|++|-+.-|.|-+.+-.| ..|.++.
T Consensus 526 sLLdnTVkVyflDtl---KFflsLYGHkLPV~smDIS~DS-klivTgSA--DKnVKiWGLdFGDCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 526 SLLDNTVKVYFLDTL---KFFLSLYGHKLPVLSMDISPDS-KLIVTGSA--DKNVKIWGLDFGDCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred EeccCeEEEEEecce---eeeeeecccccceeEEeccCCc-CeEEeccC--CCceEEeccccchhhhhhhcccCceeEEE
Confidence 98 899999999987 8888899999999999999998 56666665 999999999999998887766 7899999
Q ss_pred ECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 388 WSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 388 ~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
|-|+...+++ ++.|+.|+-||-...+.++.+.+|...|++++.+|+|.+++++|.|.+|++|.-...
T Consensus 600 F~P~~~~FFt--~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 600 FLPKTHLFFT--CGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred EcccceeEEE--ecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence 9998888888 789999999999999999999999999999999999999999999999999998763
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=255.23 Aligned_cols=230 Identities=16% Similarity=0.304 Sum_probs=193.7
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
|+.+..++|+ .++++.|+.+++||+.+++..+.+ .| |...|.+++|++|.+.++++ +.|.+|++|+........
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f--~G-H~~dVlsva~s~dn~qivSG-SrDkTiklwnt~g~ck~t 141 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF--VG-HTKDVLSVAFSTDNRQIVSG-SRDKTIKLWNTLGVCKYT 141 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCCcEEEEE--Ee-cCCceEEEEecCCCceeecC-CCcceeeeeeecccEEEE
Confidence 3345556666 677889999999999999765554 45 99999999999999999999 999999999987654444
Q ss_pred EEee-cCccEEEEEe----eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8285 246 KLRT-HMHQVIAMCW----NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 246 ~~~~-~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d 319 (507)
.... +.+-|.|+.| +..+|++++.|++|++||+++.+ ....+.+|...++.+++||||.+.++|+ ||.+.+||
T Consensus 142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-LRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-hhhccccccccEEEEEECCCCCEEecCCCCceEEEEE
Confidence 3333 3788999999 26689999999999999999876 6778889999999999999999999999 69999999
Q ss_pred cCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC----------CCeEEEEEC
Q psy8285 320 FRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD----------SQVTSILWS 389 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~i~~~~~s 389 (507)
++.+ +.+..+. |...|.+++|+|+. +.++.+. +..|+|||+.++.++..+... ....+++|+
T Consensus 221 L~~~---k~lysl~-a~~~v~sl~fspnr-ywL~~at---~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws 292 (315)
T KOG0279|consen 221 LNEG---KNLYSLE-AFDIVNSLCFSPNR-YWLCAAT---ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWS 292 (315)
T ss_pred ccCC---ceeEecc-CCCeEeeEEecCCc-eeEeecc---CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEc
Confidence 9998 7777765 88999999999975 6666665 677999999999877766432 236789999
Q ss_pred CCCCeEEEEeccCCCeEEEEeCC
Q psy8285 390 EQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 390 ~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
+||..|++ |..|+.|++|.+.
T Consensus 293 ~dG~tLf~--g~td~~irv~qv~ 313 (315)
T KOG0279|consen 293 ADGQTLFA--GYTDNVIRVWQVA 313 (315)
T ss_pred CCCcEEEe--eecCCcEEEEEee
Confidence 99999999 8999999999874
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=271.14 Aligned_cols=369 Identities=16% Similarity=0.256 Sum_probs=282.1
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee----cCcccceeeccccccccccCCccCCceeE
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK----TDSQVTSILWSEQYRESSRSKMVNTDRYV 77 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~----~~~~v~~~~~s~~~~~~~~~~~~~~~~~~ 77 (507)
++.|...|.|+.|||||.. +||.+ .|++|.|+|=.+|+.+..+. |.+.|.++.|+||.+.+.+.. +|..
T Consensus 186 ~r~HskFV~~VRysPDG~~-Fat~g--sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S---aDkt- 258 (603)
T KOG0318|consen 186 FREHSKFVNCVRYSPDGSR-FATAG--SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS---ADKT- 258 (603)
T ss_pred ccccccceeeEEECCCCCe-EEEec--CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec---CCce-
Confidence 5789999999999999997 88887 79999999999999999987 689999999999998766532 2233
Q ss_pred eecCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhh
Q psy8285 78 VDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERIL 157 (507)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (507)
++.|+++..+ +. +-|.+.
T Consensus 259 ---------~KIWdVs~~s--------------lv-----------~t~~~~---------------------------- 276 (603)
T KOG0318|consen 259 ---------IKIWDVSTNS--------------LV-----------STWPMG---------------------------- 276 (603)
T ss_pred ---------EEEEEeeccc--------------eE-----------EEeecC----------------------------
Confidence 3333333220 00 001100
Q ss_pred cCCCcccccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEe
Q psy8285 158 EAPSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWH 237 (507)
Q Consensus 158 ~~~~~~~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd 237 (507)
.-.++..+ ..-|..+.+++++.+|.|.++++..+...+++ .| |...|+++..+|++++|+++ +.||.|.-|+
T Consensus 277 ---~~v~dqqv-G~lWqkd~lItVSl~G~in~ln~~d~~~~~~i--~G-HnK~ITaLtv~~d~~~i~Sg-syDG~I~~W~ 348 (603)
T KOG0318|consen 277 ---STVEDQQV-GCLWQKDHLITVSLSGTINYLNPSDPSVLKVI--SG-HNKSITALTVSPDGKTIYSG-SYDGHINSWD 348 (603)
T ss_pred ---CchhceEE-EEEEeCCeEEEEEcCcEEEEecccCCChhhee--cc-cccceeEEEEcCCCCEEEee-ccCceEEEEe
Confidence 00111122 35677778999999999999999998855444 45 99999999999999999999 9999999999
Q ss_pred CCCceeEEEE-eecCccEEEEEeeC-CEEEEEecCCeEEEEECCCCC-----------cCc-------------------
Q psy8285 238 EQEERLIQKL-RTHMHQVIAMCWNG-NLLSCGTIGGNILHYDVRTHS-----------DYP------------------- 285 (507)
Q Consensus 238 ~~~~~~~~~~-~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~-----------~~~------------------- 285 (507)
..++..-+.. +.|...|.+++-.. ..+++.+.|.++++.++.... ++.
T Consensus 349 ~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~i 428 (603)
T KOG0318|consen 349 SGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDI 428 (603)
T ss_pred cCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcE
Confidence 9988766554 57999999998844 778888999999998774321 000
Q ss_pred eeeec--------CCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEc
Q psy8285 286 TAITR--------EGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 286 ~~~~~--------~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
..++. ......+++++|++..+++|+ |+.|++|.+..... ........|.+++++++++||+.++.+ +.
T Consensus 429 v~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l-~ee~~~~~h~a~iT~vaySpd~~yla~-~D 506 (603)
T KOG0318|consen 429 VLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDEL-KEEAKLLEHRAAITDVAYSPDGAYLAA-GD 506 (603)
T ss_pred EEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcc-cceeeeecccCCceEEEECCCCcEEEE-ec
Confidence 01111 122346899999999999999 69999999987633 333345569999999999999965555 43
Q ss_pred cCCCCeEEEEeCCCCCeee-eee-cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc-EEEEeeccccceeEEEEC
Q psy8285 357 GICDQTVRLWNSMNGKEKC-HVK-TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH-LIEELKIHQERILSAVLS 433 (507)
Q Consensus 357 ~~~d~~i~i~d~~~~~~~~-~~~-~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~s 433 (507)
. .+.+.+||..+.+... .+. +...|.+++|+|+..++|+ |+.|..|.||++.... .+....+|...|+.+.|-
T Consensus 507 a--~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vAT--GSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl 582 (603)
T KOG0318|consen 507 A--SRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVAT--GSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL 582 (603)
T ss_pred c--CCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEe--ccccceEEEEEccChhhheEeccccccCceeEEEe
Confidence 3 8999999998887632 233 3478999999999999999 9999999999998753 344456798889999997
Q ss_pred CCCCEEEEEeCCCcEEEEecC
Q psy8285 434 PDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 434 ~~~~~l~s~~~dg~i~iw~~~ 454 (507)
. ...+++.+.|..|++|++.
T Consensus 583 d-e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 583 D-ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred c-CceEEeccCcceeEEeccc
Confidence 4 4679999999999999974
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=262.75 Aligned_cols=323 Identities=19% Similarity=0.249 Sum_probs=269.1
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
+..|++.|.+++.+|+ ..|+|||+ .|..-.||+..+|..+..+. |...|+++.||
T Consensus 60 F~~H~~svFavsl~P~-~~l~aTGG--gDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs--------------------- 115 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPN-NNLVATGG--GDDLAFLWDISTGEFAGELTGHKDSVTCCSFS--------------------- 115 (399)
T ss_pred hhhcCCceEEEEeCCC-CceEEecC--CCceEEEEEccCCcceeEecCCCCceEEEEEc---------------------
Confidence 5689999999999996 45799999 79999999999999777665 55556555554
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 116 -------------------------------------------------------------------------------- 115 (399)
T KOG0296|consen 116 -------------------------------------------------------------------------------- 115 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
.++ ++++..+|.|.||...++.....+.. .-..+.=+.|+|.+..|+++ +.||.+-+|.+
T Consensus 116 --------------hdgtlLATGdmsG~v~v~~~stg~~~~~~~~---e~~dieWl~WHp~a~illAG-~~DGsvWmw~i 177 (399)
T KOG0296|consen 116 --------------HDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ---EVEDIEWLKWHPRAHILLAG-STDGSVWMWQI 177 (399)
T ss_pred --------------cCceEEEecCCCccEEEEEcccCceEEEeec---ccCceEEEEecccccEEEee-cCCCcEEEEEC
Confidence 444 34456899999999999887665543 45779999999999999988 99999999999
Q ss_pred CCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 239 QEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
.++...+.+.+|..++++=.| +|+.++++..||+|++|++.++......-........++.++..+..++.|+ ++.+
T Consensus 178 p~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~ 257 (399)
T KOG0296|consen 178 PSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA 257 (399)
T ss_pred CCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccE
Confidence 998889999999999999888 8999999999999999999998743333333455678889998888888888 5888
Q ss_pred EEEEcCCCCCCCCeeeec--------CCCCCeeEEEEccCCCcE--EEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEE
Q psy8285 316 KIWDFRQLDAKRPQVNNQ--------CHLSAVKAIAWCPWEPTL--LATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTS 385 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~ 385 (507)
++-+..++ +.+.... .+...+.++.+.|....+ ++++ +.||+|.|||+...+..+.+.+...|+.
T Consensus 258 ~~~~~~sg---KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G--~vdG~i~iyD~a~~~~R~~c~he~~V~~ 332 (399)
T KOG0296|consen 258 CGVNNGSG---KVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACG--SVDGTIAIYDLAASTLRHICEHEDGVTK 332 (399)
T ss_pred EEEccccc---eEEEecCCCCccccccchhhhhhhhhcccccccchhhcc--cccceEEEEecccchhheeccCCCceEE
Confidence 88877666 3333322 355566777777765443 4444 4799999999999999999998889999
Q ss_pred EEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 386 ILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 386 ~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
+.|-+ ..+|++ ++.+|.|+.||.++|+++..+.+|...|.+++++|+.++++|+|.|++.+||++.
T Consensus 333 l~w~~-t~~l~t--~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 333 LKWLN-TDYLLT--ACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcC-cchhee--eccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999 788988 7789999999999999999999999999999999999999999999999999874
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=250.87 Aligned_cols=275 Identities=15% Similarity=0.230 Sum_probs=240.2
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
.-.|..+.|+|++ ++++|.|..|.+|+.. +.......+.+ |.+.|..+.|.+++..++++ +.|.+++.||+++|+
T Consensus 47 ~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~-gdceN~~~lkg-HsgAVM~l~~~~d~s~i~S~-gtDk~v~~wD~~tG~ 123 (338)
T KOG0265|consen 47 KGEIYTIKFHPDGSCFASGGSDRAIVLWNVY-GDCENFWVLKG-HSGAVMELHGMRDGSHILSC-GTDKTVRGWDAETGK 123 (338)
T ss_pred cceEEEEEECCCCCeEeecCCcceEEEEecc-ccccceeeecc-ccceeEeeeeccCCCEEEEe-cCCceEEEEecccce
Confidence 3457889999998 7777899999999974 34444555567 99999999999999999999 999999999999999
Q ss_pred eEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEE
Q psy8285 243 LIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIW 318 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~ 318 (507)
.++.+++|..-+..+.. +..++.+++.|+++++||+++.. ..+ ....+..++++.|..++..+.+|+ |+.|++|
T Consensus 124 ~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~~-t~~~kyqltAv~f~d~s~qv~sggIdn~ikvW 201 (338)
T KOG0265|consen 124 RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AIK-TFENKYQLTAVGFKDTSDQVISGGIDNDIKVW 201 (338)
T ss_pred eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hhh-ccccceeEEEEEecccccceeeccccCceeee
Confidence 99999999999999887 46788899999999999999865 333 334567899999999999999999 8999999
Q ss_pred EcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC----CeeeeeecC-----CCeEEEEEC
Q psy8285 319 DFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG----KEKCHVKTD-----SQVTSILWS 389 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~----~~~~~~~~~-----~~i~~~~~s 389 (507)
|++.. .....+.+|..+|+.+..+|+|..++. .++|.++++||++.. +++..+.++ .....++|+
T Consensus 202 d~r~~---d~~~~lsGh~DtIt~lsls~~gs~lls---nsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csws 275 (338)
T KOG0265|consen 202 DLRKN---DGLYTLSGHADTITGLSLSRYGSFLLS---NSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWS 275 (338)
T ss_pred ccccC---cceEEeecccCceeeEEeccCCCcccc---ccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeecc
Confidence 99988 899999999999999999999987777 457999999999754 345555554 246788999
Q ss_pred CCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 390 EQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 390 ~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
|++..+.+ |+.|..+++||......+..+.+|.+.|++++|+|....|.+++.|.+|++=+
T Consensus 276 p~~~~i~a--gs~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 276 PNGTKITA--GSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCCCcccc--ccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 99999999 99999999999999999999999999999999999999999999999988643
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=272.10 Aligned_cols=285 Identities=21% Similarity=0.318 Sum_probs=246.4
Q ss_pred cCCCcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEE
Q psy8285 158 EAPSIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDL 235 (507)
Q Consensus 158 ~~~~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~i 235 (507)
....-+....|+.+.|.|+| +++++..|.+.+|+........+.+. |+.+|+++.|++++.+++++ +.+|.|++
T Consensus 89 h~s~NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQa---HDs~Vr~m~ws~~g~wmiSg-D~gG~iKy 164 (464)
T KOG0284|consen 89 HTSSNKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQA---HDSPVRTMKWSHNGTWMISG-DKGGMIKY 164 (464)
T ss_pred eccccccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhh---hcccceeEEEccCCCEEEEc-CCCceEEe
Confidence 33333445568899999996 99999999999999866554444433 99999999999999999999 99999999
Q ss_pred EeCCCceeEEEEee-cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-
Q psy8285 236 WHEQEERLIQKLRT-HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS- 311 (507)
Q Consensus 236 wd~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 311 (507)
|+.+- ..++.++. |...|++++| ++..|++++.||+|+|||..... ....+.+|.-.|.+++|+|...+|++++
T Consensus 165 Wqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k-ee~vL~GHgwdVksvdWHP~kgLiasgsk 242 (464)
T KOG0284|consen 165 WQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK-EERVLRGHGWDVKSVDWHPTKGLIASGSK 242 (464)
T ss_pred cccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc-hhheeccCCCCcceeccCCccceeEEccC
Confidence 99764 44555555 4489999999 68899999999999999998876 5567799999999999999999999999
Q ss_pred CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECC
Q psy8285 312 NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSE 390 (507)
Q Consensus 312 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~ 390 (507)
|+.|++||.+++ .++.++..|...|..+.|+|++ .+|++++. |..++++|+++.+.+..+++| ..++++.|+|
T Consensus 243 DnlVKlWDprSg---~cl~tlh~HKntVl~~~f~~n~-N~Llt~sk--D~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP 316 (464)
T KOG0284|consen 243 DNLVKLWDPRSG---SCLATLHGHKNTVLAVKFNPNG-NWLLTGSK--DQSCKVFDIRTMKELFTYRGHKKDVTSLTWHP 316 (464)
T ss_pred CceeEeecCCCc---chhhhhhhccceEEEEEEcCCC-CeeEEccC--CceEEEEehhHhHHHHHhhcchhhheeecccc
Confidence 699999999999 9999999999999999999999 55556555 999999999999989988876 7899999999
Q ss_pred CCCeEEEEeccCCCeEEEEeCCCccEEEEe-eccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 391 QYRELVTSHGKQDCSLKMWEYPRLHLIEEL-KIHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 391 ~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
-..-|+++ |+.||.|..|.+...+++..+ .+|...|++++|+|-|..|++|+.|.++++|.-..
T Consensus 317 ~~~~lfts-gg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 317 LNESLFTS-GGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred ccccceee-ccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccCC
Confidence 98888877 889999999999866666655 47999999999999999999999999999998653
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=266.40 Aligned_cols=302 Identities=20% Similarity=0.358 Sum_probs=251.4
Q ss_pred ccceeeeeeCCC--CEEEE-EcCCeEEEEECCC--CceeEEEec---------CCCCCCceEEEEEccCCCeEEEEeCCC
Q psy8285 165 DFYTSGLDWGYH--DTLAV-ALDTSVYTWNTKT--NKTQLLVEY---------PTYDNAYISCVAWKPRTTDLAVTNTCT 230 (507)
Q Consensus 165 ~~~i~~~~~s~~--~~~~~-~~~~~i~iw~~~~--~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~~d 230 (507)
...|.+-+|+|- ++++. +.+...++|++.. ........+ ....+..|++++|+.+|..||++ +.|
T Consensus 178 ~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG-~~~ 256 (524)
T KOG0273|consen 178 ESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG-SED 256 (524)
T ss_pred CCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe-ecC
Confidence 344778999994 45554 5788999999874 111110000 00145789999999999999999 999
Q ss_pred CcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEE
Q psy8285 231 EYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLA 308 (507)
Q Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 308 (507)
|.+++|+. ++.++.++..|.++|.++.| .|++|++++.|+++.+||..++. ....+..|..+-..+.|-.+..+..
T Consensus 257 G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~-~~q~f~~~s~~~lDVdW~~~~~F~t 334 (524)
T KOG0273|consen 257 GEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT-VKQQFEFHSAPALDVDWQSNDEFAT 334 (524)
T ss_pred cEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce-EEEeeeeccCCccceEEecCceEee
Confidence 99999995 56888899999999999999 58899999999999999998876 5667777877767889987766555
Q ss_pred EEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEE
Q psy8285 309 SGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSIL 387 (507)
Q Consensus 309 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~ 387 (507)
+..|+.|+++.+... .+..++.+|.++|.++.|+|.+ .++++++. |++++||..........+..| ..|..+.
T Consensus 335 s~td~~i~V~kv~~~---~P~~t~~GH~g~V~alk~n~tg-~LLaS~Sd--D~TlkiWs~~~~~~~~~l~~Hskei~t~~ 408 (524)
T KOG0273|consen 335 SSTDGCIHVCKVGED---RPVKTFIGHHGEVNALKWNPTG-SLLASCSD--DGTLKIWSMGQSNSVHDLQAHSKEIYTIK 408 (524)
T ss_pred cCCCceEEEEEecCC---CcceeeecccCceEEEEECCCC-ceEEEecC--CCeeEeeecCCCcchhhhhhhccceeeEe
Confidence 555899999999887 8999999999999999999998 56677664 999999999988888888887 5899999
Q ss_pred ECCCCC---------eEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 388 WSEQYR---------ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 388 ~s~~~~---------~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
|+|+|. .+++ .+.|+.|++||+..+.+++.|..|+.+|.+++|+|+|+++|+|+.||.|++|+..+++.
T Consensus 409 wsp~g~v~~n~~~~~~l~s--as~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 409 WSPTGPVTSNPNMNLMLAS--ASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred ecCCCCccCCCcCCceEEE--eecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhe
Confidence 999753 4666 67899999999999999999999999999999999999999999999999999999998
Q ss_pred ccceeecCCCcceEEeecc
Q psy8285 459 KRKARQVGSGSSLEFAILK 477 (507)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~ 477 (507)
.+.......+..+.|.-..
T Consensus 487 ~~s~~~~~~Ifel~Wn~~G 505 (524)
T KOG0273|consen 487 VKSYQGTGGIFELCWNAAG 505 (524)
T ss_pred eEeecCCCeEEEEEEcCCC
Confidence 8887766665555555443
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=255.39 Aligned_cols=277 Identities=18% Similarity=0.330 Sum_probs=250.2
Q ss_pred ccceeeeeeCCCC-E-EEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC-c
Q psy8285 165 DFYTSGLDWGYHD-T-LAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE-E 241 (507)
Q Consensus 165 ~~~i~~~~~s~~~-~-~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~-~ 241 (507)
...|..+-++|+. + ++++.|.+|++||..+++.. ..+.| |.+.+.+++|+..|++|+++ +.|-.+++||..+ .
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e--~~LrG-Ht~sv~di~~~a~Gk~l~tc-SsDl~~~LWd~~~~~ 183 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE--RSLRG-HTDSVFDISFDASGKYLATC-SSDLSAKLWDFDTFF 183 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEccchhhh--hhhhc-cccceeEEEEecCccEEEec-CCccchhheeHHHHH
Confidence 3457778889988 3 33447999999999999984 45566 99999999999999999999 9999999999987 5
Q ss_pred eeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEE
Q psy8285 242 RLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIW 318 (507)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~ 318 (507)
++++.+.+|...|.++.| .|+++++++.|.+|+.|++.++. +...+.+|...|..+..+.||.++++++ |.++++|
T Consensus 184 ~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 184 RCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVW 262 (406)
T ss_pred HHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce-eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEE
Confidence 778888899999999999 78999999999999999999986 7889999999999999999999999999 6999999
Q ss_pred EcCCCCCCCCeeeecCCCCCeeEEEEccC--------------CCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCe
Q psy8285 319 DFRQLDAKRPQVNNQCHLSAVKAIAWCPW--------------EPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQV 383 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i 383 (507)
-+.++ ++...+..|+.+|.+++|.|. +..++.+++. |++|++||+.++.++.++.++ +.|
T Consensus 263 ~~~t~---~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr--DktIk~wdv~tg~cL~tL~ghdnwV 337 (406)
T KOG0295|consen 263 VVATK---QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR--DKTIKIWDVSTGMCLFTLVGHDNWV 337 (406)
T ss_pred Eeccc---hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc--cceEEEEeccCCeEEEEEeccccee
Confidence 99987 778888899999999999874 2246777765 999999999999999999888 789
Q ss_pred EEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 384 TSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 384 ~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
..++|+|.|+||++ ..+|+++++||+++++++..+..|..-++++.|+.+..++++|+-|..+++|.-
T Consensus 338 r~~af~p~Gkyi~S--caDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 338 RGVAFSPGGKYILS--CADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeeEEcCCCeEEEE--EecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999999999 779999999999999999999999999999999999999999999999999974
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=276.57 Aligned_cols=243 Identities=23% Similarity=0.390 Sum_probs=221.1
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce-------------------------------eEEEEeecCccEE
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER-------------------------------LIQKLRTHMHQVI 255 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~-------------------------------~~~~~~~~~~~v~ 255 (507)
....++|..|++++..||.+ ..|..|++|.+...+ ...++.+|.++|.
T Consensus 377 t~~~v~ca~fSddssmlA~G-f~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVy 455 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACG-FVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVY 455 (707)
T ss_pred cCCcceeEeecCCcchhhcc-ccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCcee
Confidence 45679999999999988877 999999999876311 2245778999999
Q ss_pred EEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeee
Q psy8285 256 AMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNN 332 (507)
Q Consensus 256 ~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~ 332 (507)
..+| +.++|++++.|+++++|.+.+.. ......+|..+|..+.|+|.|-++|+++ |++.++|..... .+++.+
T Consensus 456 g~sFsPd~rfLlScSED~svRLWsl~t~s-~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~---~PlRif 531 (707)
T KOG0263|consen 456 GCSFSPDRRFLLSCSEDSSVRLWSLDTWS-CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN---KPLRIF 531 (707)
T ss_pred eeeecccccceeeccCCcceeeeecccce-eEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC---Cchhhh
Confidence 9999 78999999999999999999976 6677789999999999999999999999 799999999886 899999
Q ss_pred cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeC
Q psy8285 333 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEY 411 (507)
Q Consensus 333 ~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~ 411 (507)
.+|.+.|.|+.|+|+. .++++|+. |.++++||+.+|..++.|.+| ++|.+++|||+|++|++ |++||.|.+||+
T Consensus 532 aghlsDV~cv~FHPNs-~Y~aTGSs--D~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS--g~ed~~I~iWDl 606 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNS-NYVATGSS--DRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS--GDEDGLIKIWDL 606 (707)
T ss_pred cccccccceEEECCcc-cccccCCC--CceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee--cccCCcEEEEEc
Confidence 9999999999999988 56666654 999999999999999999988 89999999999999999 999999999999
Q ss_pred CCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 412 PRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 412 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
.+++++..+.+|.+.|.++.|+.||..||+|+.|.+|++||+......
T Consensus 607 ~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 999999999999999999999999999999999999999999865544
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=230.31 Aligned_cols=276 Identities=17% Similarity=0.317 Sum_probs=225.0
Q ss_pred eeeeeeCCC-C--EEEEEcCCeEEEEECCCC-ceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc--
Q psy8285 168 TSGLDWGYH-D--TLAVALDTSVYTWNTKTN-KTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE-- 241 (507)
Q Consensus 168 i~~~~~s~~-~--~~~~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~-- 241 (507)
+-.++|+|. | +.+++.|+.|++|+...+ .......+.+.|...|.+++|+|.|++|+++ +.|.++.||.-..+
T Consensus 17 ~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~a-SFD~t~~Iw~k~~~ef 95 (312)
T KOG0645|consen 17 VWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASA-SFDATVVIWKKEDGEF 95 (312)
T ss_pred EEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEe-eccceEEEeecCCCce
Confidence 557999998 5 455679999999999843 3333333333399999999999999999999 99999999986643
Q ss_pred eeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCC--cCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEE
Q psy8285 242 RLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHS--DYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVK 316 (507)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~ 316 (507)
+++..+++|...|.+++| +|++||++++|..|-||.+.... .+...++.|...|..+.|+|...+|++++ |++|+
T Consensus 96 ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk 175 (312)
T KOG0645|consen 96 ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIK 175 (312)
T ss_pred eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEE
Confidence 788899999999999999 79999999999999999998544 35678899999999999999999999999 89999
Q ss_pred EEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEE
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELV 396 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 396 (507)
+|+-.....-.+..++.+|...|.+++|+|.|.++..+.. |++++||-....- ...+...+..+.|. ...|+
T Consensus 176 ~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd---D~tv~Iw~~~~~~---~~~~sr~~Y~v~W~--~~~Ia 247 (312)
T KOG0645|consen 176 VYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD---DGTVSIWRLYTDL---SGMHSRALYDVPWD--NGVIA 247 (312)
T ss_pred EEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC---CcceEeeeeccCc---chhcccceEeeeec--ccceE
Confidence 9998765566789999999999999999999966655443 9999999865221 11223578889998 55677
Q ss_pred EEeccCCCeEEEEeCCCc------cEEE-EeeccccceeEEEECCC-CCEEEEEeCCCcEEEEecC
Q psy8285 397 TSHGKQDCSLKMWEYPRL------HLIE-ELKIHQERILSAVLSPD-QTCVAAASADETISIWNCF 454 (507)
Q Consensus 397 ~~~g~~d~~i~v~d~~~~------~~~~-~~~~~~~~i~~~~~s~~-~~~l~s~~~dg~i~iw~~~ 454 (507)
+ ++.|+.|++|.-... +.+. .-..|...|++++|+|. ..+|+++++||.|++|.+.
T Consensus 248 S--~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 248 S--GGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred e--ccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 7 778999999976542 1111 22458889999999995 6789999999999999975
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=247.18 Aligned_cols=281 Identities=19% Similarity=0.299 Sum_probs=242.2
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
++||.+.|.|+++.|-+.+ ++||+ .|++|+|||+.+|++..++. |-..|..+++|+..
T Consensus 147 i~gHlgWVr~vavdP~n~w-f~tgs--~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH------------------ 205 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEW-FATGS--ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH------------------ 205 (460)
T ss_pred hhhccceEEEEeeCCCcee-EEecC--CCceeEEEEcccCeEEEeecchhheeeeeeecccC------------------
Confidence 5799999999999997665 99999 89999999999999888776 55555555554111
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 206 -------------------------------------------------------------------------------- 205 (460)
T KOG0285|consen 206 -------------------------------------------------------------------------------- 205 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC
Q psy8285 161 SIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
..+++++.|+.|+.||++..+.++.+ .| |-..|.|++.+|.-+.|+++ +.|.++++||+++
T Consensus 206 ---------------pYlFs~gedk~VKCwDLe~nkvIR~Y--hG-HlS~V~~L~lhPTldvl~t~-grDst~RvWDiRt 266 (460)
T KOG0285|consen 206 ---------------PYLFSAGEDKQVKCWDLEYNKVIRHY--HG-HLSGVYCLDLHPTLDVLVTG-GRDSTIRVWDIRT 266 (460)
T ss_pred ---------------ceEEEecCCCeeEEEechhhhhHHHh--cc-ccceeEEEeccccceeEEec-CCcceEEEeeecc
Confidence 12677889999999999988876544 44 99999999999999999999 9999999999999
Q ss_pred ceeEEEEeecCccEEEEEee--CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEE
Q psy8285 241 ERLIQKLRTHMHQVIAMCWN--GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIW 318 (507)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~ 318 (507)
...+..+.+|..+|..+.++ +..+++|+.|++|++||++.++ ....+..|+..+++++.+|....+|+++-..|+-|
T Consensus 267 r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk-t~~tlt~hkksvral~lhP~e~~fASas~dnik~w 345 (460)
T KOG0285|consen 267 RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK-TMITLTHHKKSVRALCLHPKENLFASASPDNIKQW 345 (460)
T ss_pred cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc-eeEeeecccceeeEEecCCchhhhhccCCccceec
Confidence 99999999999999999995 7788999999999999999987 56778889999999999999999999998899999
Q ss_pred EcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeee---------ecCCCeEEEEEC
Q psy8285 319 DFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHV---------KTDSQVTSILWS 389 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~---------~~~~~i~~~~~s 389 (507)
++..+ ..+..+.+|..-+.+++.+.|+ ++++|+. +|.+.+||.+++-..+.. ..+..|.+.+|.
T Consensus 346 ~~p~g---~f~~nlsgh~~iintl~~nsD~--v~~~G~d--ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD 418 (460)
T KOG0285|consen 346 KLPEG---EFLQNLSGHNAIINTLSVNSDG--VLVSGGD--NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD 418 (460)
T ss_pred cCCcc---chhhccccccceeeeeeeccCc--eEEEcCC--ceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence 99988 7777789999999999999887 5666654 899999999988654433 223568999999
Q ss_pred CCCCeEEEEeccCCCeEEEEeCC
Q psy8285 390 EQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 390 ~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
..|..|++ |..|.+|++|.-.
T Consensus 419 ktg~rlit--~eadKtIk~~keD 439 (460)
T KOG0285|consen 419 KTGSRLIT--GEADKTIKMYKED 439 (460)
T ss_pred ccCceEEe--ccCCcceEEEecc
Confidence 99999999 8899999999754
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=251.29 Aligned_cols=267 Identities=19% Similarity=0.286 Sum_probs=238.4
Q ss_pred EEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEE
Q psy8285 199 LLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHY 276 (507)
Q Consensus 199 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~ 276 (507)
....+.+ |..+|+.+-|+|+-..++++ +.|++|++||..++++...+++|...+.+++| .|+++++++.|-.+.+|
T Consensus 100 l~~~l~g-~r~~vt~v~~hp~~~~v~~a-s~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 100 LVQKLAG-HRSSVTRVIFHPSEALVVSA-SEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred chhhhhc-cccceeeeeeccCceEEEEe-cCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 3444556 89999999999999888888 99999999999999999999999999999999 58999999999999999
Q ss_pred ECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEE
Q psy8285 277 DVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATG 355 (507)
Q Consensus 277 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 355 (507)
|..+...+.+.+.+|...|.+++|-|.|.++++++ |.+|+.|++.++ .++.++.+|...|..++.+.|| .+++++
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg---~cv~t~~~h~ewvr~v~v~~DG-ti~As~ 253 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG---YCVKTFPGHSEWVRMVRVNQDG-TIIASC 253 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc---eeEEeccCchHhEEEEEecCCe-eEEEec
Confidence 99986567778889999999999999999999999 799999999999 9999999999999999999998 788888
Q ss_pred ccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCC---------------CCeEEEEeccCCCeEEEEeCCCccEEEE
Q psy8285 356 GGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQ---------------YRELVTSHGKQDCSLKMWEYPRLHLIEE 419 (507)
Q Consensus 356 ~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~---------------~~~l~~~~g~~d~~i~v~d~~~~~~~~~ 419 (507)
+. |.++++|-+.++++...+..+ .++.+++|.|. ++++.. ++.|++|++||+.++.++.+
T Consensus 254 s~--dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s--~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 254 SN--DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS--GSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred CC--CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe--ecccceEEEEeccCCeEEEE
Confidence 75 999999999999888888776 68899999774 246777 89999999999999999999
Q ss_pred eeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceee-cCCCcceEEee
Q psy8285 420 LKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQ-VGSGSSLEFAI 475 (507)
Q Consensus 420 ~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~ 475 (507)
+.+|.+.|..++|+|.|+||+++.+|+++++||+.+......... .+-+.++++..
T Consensus 330 L~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~ 386 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK 386 (406)
T ss_pred EecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC
Confidence 999999999999999999999999999999999999988876653 33344555544
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=256.48 Aligned_cols=274 Identities=25% Similarity=0.395 Sum_probs=239.1
Q ss_pred cceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 166 FYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 166 ~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
..|.+++|+|++ +++++.++.+++|+..+++....... |...+..+.|+|++++++++ +.+|.|++||+.+++.
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~-~~~~~i~i~~~~~~~~ 85 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG---HTGPVRDVAASADGTYLASG-SSDKTIRLWDLETGEC 85 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec---CCcceeEEEECCCCCEEEEE-cCCCeEEEEEcCcccc
Confidence 458899999986 55566799999999988775444443 78889999999999999998 8899999999999888
Q ss_pred EEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEc
Q psy8285 244 IQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDF 320 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~ 320 (507)
+..+..|...+.++.| +++++++++.++.+.+||+++.+ ....+..|...+.+++|+|+++++++++ ++.|++||+
T Consensus 86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164 (289)
T ss_pred eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE-EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence 8888899999999999 45788888889999999998655 4556667888999999999999999998 799999999
Q ss_pred CCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEe
Q psy8285 321 RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSH 399 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~ 399 (507)
+.+ +....+..|...+.++.|+|++..+++++. ++.+++||++.++.+..+..+ ..+.++.|+|++.++++
T Consensus 165 ~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-- 236 (289)
T cd00200 165 RTG---KCVATLTGHTGEVNSVAFSPDGEKLLSSSS---DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS-- 236 (289)
T ss_pred ccc---ccceeEecCccccceEEECCCcCEEEEecC---CCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE--
Confidence 876 667777788889999999999966666554 999999999999888888444 68999999999888877
Q ss_pred ccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 400 GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 400 g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
++.++.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.+++|+
T Consensus 237 ~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 237 GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 66799999999999999999999999999999999999999999999999996
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=256.76 Aligned_cols=245 Identities=22% Similarity=0.406 Sum_probs=217.9
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY 284 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 284 (507)
...+|..+.|.|+|+.|+++ +..|.+.+|+.........++.|..+|.++.| ++.++++|+.+|.|++|+.+...
T Consensus 95 vkc~V~~v~WtPeGRRLltg-s~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-- 171 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTG-SQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-- 171 (464)
T ss_pred cccceeeEEEcCCCceeEee-cccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--
Confidence 35579999999999999999 99999999998766666667889999999999 79999999999999999998754
Q ss_pred ceeeec-CCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCe
Q psy8285 285 PTAITR-EGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQT 362 (507)
Q Consensus 285 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~ 362 (507)
...+.. |...|++++|+|+...+++++| |+|+|||.... +....+.+|.-.|.+++|+|.. -++++++. |..
T Consensus 172 Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~---kee~vL~GHgwdVksvdWHP~k-gLiasgsk--Dnl 245 (464)
T KOG0284|consen 172 VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP---KEERVLRGHGWDVKSVDWHPTK-GLIASGSK--DNL 245 (464)
T ss_pred hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC---chhheeccCCCCcceeccCCcc-ceeEEccC--Cce
Confidence 444444 4589999999999999999995 99999999987 6667779999999999999976 67777775 899
Q ss_pred EEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECC-CCCEEE
Q psy8285 363 VRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSP-DQTCVA 440 (507)
Q Consensus 363 i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~ 440 (507)
|++||.++++++.++..| ..|..+.|+|++++|++ ++.|..+++||+++.+.+..+++|...++++.|+| ...+|.
T Consensus 246 VKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt--~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lft 323 (464)
T KOG0284|consen 246 VKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLT--GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFT 323 (464)
T ss_pred eEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEE--ccCCceEEEEehhHhHHHHHhhcchhhheeecccccccccee
Confidence 999999999999999887 78999999999999999 89999999999999999999999999999999999 456888
Q ss_pred EEeCCCcEEEEecCCCCcccce
Q psy8285 441 AASADETISIWNCFPRDKKRKA 462 (507)
Q Consensus 441 s~~~dg~i~iw~~~~~~~~~~~ 462 (507)
+|+.||.|..|.+...+++..+
T Consensus 324 sgg~Dgsvvh~~v~~~~p~~~i 345 (464)
T KOG0284|consen 324 SGGSDGSVVHWVVGLEEPLGEI 345 (464)
T ss_pred eccCCCceEEEeccccccccCC
Confidence 9999999999999866655544
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=255.22 Aligned_cols=278 Identities=20% Similarity=0.309 Sum_probs=238.4
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|+.|++.|.|+.|+|..+++|++- ..|.|.|||.++...+++|+ ..-+|.+..|-+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~L---ynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-------------------- 65 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAAL---YNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-------------------- 65 (794)
T ss_pred hhccCCceeeeecCCCCceEEEee---ecCeeEEEecccceeeeeeeecccchhhheeee--------------------
Confidence 456899999999999999977766 59999999999999888776 344443333310
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 66 -------------------------------------------------------------------------------- 65 (794)
T KOG0276|consen 66 -------------------------------------------------------------------------------- 65 (794)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC
Q psy8285 161 SIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
...| +++++.|..|++|+..+++....+.. |.+.|.+++.+|..++++++ +.|.+|++||.+.
T Consensus 66 ---------RknW----iv~GsDD~~IrVfnynt~ekV~~FeA---H~DyIR~iavHPt~P~vLts-SDDm~iKlW~we~ 128 (794)
T KOG0276|consen 66 ---------RKNW----IVTGSDDMQIRVFNYNTGEKVKTFEA---HSDYIRSIAVHPTLPYVLTS-SDDMTIKLWDWEN 128 (794)
T ss_pred ---------ccce----EEEecCCceEEEEecccceeeEEeec---cccceeeeeecCCCCeEEec-CCccEEEEeeccC
Confidence 0111 78889999999999999987766665 99999999999999999999 9999999999986
Q ss_pred c-eeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCC--CCEEEEEeC-C
Q psy8285 241 E-RLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN--GRYLASGSN-N 313 (507)
Q Consensus 241 ~-~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~d-~ 313 (507)
. .+.+++.+|..-|.+++| |.+.+++++-|++|++|.+.+.. +..++.+|...|+|+.|-+- ..+|++|+| .
T Consensus 129 ~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ 207 (794)
T KOG0276|consen 129 EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDL 207 (794)
T ss_pred ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-CceeeeccccCcceEEeccCCCcceEEecCCCc
Confidence 5 678899999999999999 68899999999999999998875 78889999999999999874 468999995 9
Q ss_pred cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCC
Q psy8285 314 TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQY 392 (507)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~ 392 (507)
+|++||.++. .++.++.+|...|..+.|+|.- -++++|++ ||+++||+..+-+...++... .++.+++-.+.+
T Consensus 208 tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~l-piiisgsE--DGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~ 281 (794)
T KOG0276|consen 208 TIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPEL-PIIISGSE--DGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGD 281 (794)
T ss_pred eEEEeecchH---HHHHHhhcccccceEEEecCCC-cEEEEecC--CccEEEecCcceehhhhhhcCCceEEEEeecCCC
Confidence 9999999998 8999999999999999999976 47777775 999999999998888887766 789999999998
Q ss_pred CeEEEEeccCCCeEEE
Q psy8285 393 RELVTSHGKQDCSLKM 408 (507)
Q Consensus 393 ~~l~~~~g~~d~~i~v 408 (507)
+.+++ |.++|.|.+
T Consensus 282 ~~i~v--G~Deg~i~v 295 (794)
T KOG0276|consen 282 GKIAV--GFDEGSVTV 295 (794)
T ss_pred CeEEE--eccCCcEEE
Confidence 88888 777776544
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=271.39 Aligned_cols=280 Identities=23% Similarity=0.376 Sum_probs=242.1
Q ss_pred cceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC-CCce
Q psy8285 166 FYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE-QEER 242 (507)
Q Consensus 166 ~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~-~~~~ 242 (507)
..+.++.+++++ +++++.++.+++|+....+......+.+ |...|.+++|+|++++++++ +.|++|+|||+ ..+.
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~-h~~~v~~~~fs~d~~~l~s~-s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSG-HTRGVSDVAFSPDGSYLLSG-SDDKTLRIWDLKDDGR 237 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccc-cccceeeeEECCCCcEEEEe-cCCceEEEeeccCCCe
Confidence 457889999998 5556699999999997666222333356 99999999999999999999 99999999999 5568
Q ss_pred eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8285 243 LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d 319 (507)
.++++.+|...|++++| +++++++|+.|++|++||+++++ +...+.+|...|.+++|++++++|++++ |+.|++||
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWD 316 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence 99999999999999999 57999999999999999999965 7889999999999999999999999999 79999999
Q ss_pred cCCCCCCCCeeeecCCCCC--eeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-C---CeEEEEECCCCC
Q psy8285 320 FRQLDAKRPQVNNQCHLSA--VKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-S---QVTSILWSEQYR 393 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~---~i~~~~~s~~~~ 393 (507)
+.++... +...+..+... ++++.|+|++.++++... |+.+++||+..++....+..+ . .+.+...++.++
T Consensus 317 ~~~~~~~-~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~---d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (456)
T KOG0266|consen 317 LETGSKL-CLKLLSGAENSAPVTSVQFSPNGKYLLSASL---DRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK 392 (456)
T ss_pred CCCCcee-eeecccCCCCCCceeEEEECCCCcEEEEecC---CCeEEEEEccCCcceeeecccCCcceeEecccccCCCC
Confidence 9998211 34555555544 999999999977777554 999999999999988888766 2 345556688999
Q ss_pred eEEEEeccCCCeEEEEeCCCccEEEEeecc-ccceeEEEECCCCCEEEEEe--CCCcEEEEecC
Q psy8285 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIH-QERILSAVLSPDQTCVAAAS--ADETISIWNCF 454 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~s~~--~dg~i~iw~~~ 454 (507)
++++ |+.|+.|++||..++..+..+.+| ...+..+.++|...++++++ .|+.+++|...
T Consensus 393 ~i~s--g~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 393 LIYS--GSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred eEEE--EeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999 999999999999999999999999 88999999999999999988 78999999864
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=248.57 Aligned_cols=272 Identities=16% Similarity=0.341 Sum_probs=235.4
Q ss_pred ceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 167 YTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 167 ~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
.|.|+.+..+.++++..|++|++||..+...... +.| |.+.|.|+.|. .+.+++| +.|.+|++||.++++++.+
T Consensus 199 gVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~--L~G-HtGSVLCLqyd--~rviisG-SSDsTvrvWDv~tge~l~t 272 (499)
T KOG0281|consen 199 GVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKI--LTG-HTGSVLCLQYD--ERVIVSG-SSDSTVRVWDVNTGEPLNT 272 (499)
T ss_pred ceEEEEecchhhhcccccCceEEeccccHHHHHh--hhc-CCCcEEeeecc--ceEEEec-CCCceEEEEeccCCchhhH
Confidence 3678888777799999999999999987766544 445 99999999996 4466666 9999999999999999999
Q ss_pred EeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCc--CceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q psy8285 247 LRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSD--YPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQL 323 (507)
Q Consensus 247 ~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~ 323 (507)
+..|...|..+.|++.++++++.|.++.+||+..... ....+.+|...|+.+.|+ .+++++++ |.+|++|++.+.
T Consensus 273 lihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~ 350 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTC 350 (499)
T ss_pred HhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccce
Confidence 9999999999999999999999999999999987652 345678999999999996 45999998 799999999998
Q ss_pred CCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccC
Q psy8285 324 DAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQ 402 (507)
Q Consensus 324 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~ 402 (507)
+.+.++.+|...|.|+.+. + .++++|+. |.+|++||+..|.+++.+++| .-|.++.| |.+.+++ |..
T Consensus 351 ---efvRtl~gHkRGIAClQYr--~-rlvVSGSS--DntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVS--GaY 418 (499)
T KOG0281|consen 351 ---EFVRTLNGHKRGIACLQYR--D-RLVVSGSS--DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS--GAY 418 (499)
T ss_pred ---eeehhhhcccccceehhcc--C-eEEEecCC--CceEEEEeccccHHHHHHhchHHhhhheee--cCceeee--ccc
Confidence 8999999999999999874 3 78888876 999999999999999999998 56899999 4678888 899
Q ss_pred CCeEEEEeCCCccE---------EEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccc
Q psy8285 403 DCSLKMWEYPRLHL---------IEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKR 460 (507)
Q Consensus 403 d~~i~v~d~~~~~~---------~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 460 (507)
||+|+|||+..+.. +..+..|.+.|..+.| |...+++++.|.+|.|||+.++.+..
T Consensus 419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~~ 483 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPSA 483 (499)
T ss_pred cceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCccc
Confidence 99999999976532 3445678999999999 66789999999999999998876654
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=266.44 Aligned_cols=235 Identities=19% Similarity=0.329 Sum_probs=210.9
Q ss_pred eeeeeeCCCC-EEEEE-cCCeEEEEECCCCcee-----------------------------EEEecCCCCCCceEEEEE
Q psy8285 168 TSGLDWGYHD-TLAVA-LDTSVYTWNTKTNKTQ-----------------------------LLVEYPTYDNAYISCVAW 216 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~-~~~~i~iw~~~~~~~~-----------------------------~~~~~~~~~~~~v~~~~~ 216 (507)
++|.++++|. ++|++ .|..|++|.+...+.. ....+-| |.++|..+.|
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G-H~GPVyg~sF 459 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG-HSGPVYGCSF 459 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec-CCCceeeeee
Confidence 6889999988 66665 8999999998742210 1122446 9999999999
Q ss_pred ccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCc
Q psy8285 217 KPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDV 294 (507)
Q Consensus 217 ~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 294 (507)
+|+.++|+++ +.|+++++|.+.+..++..+++|..+|+++.| .|-+||+++.|++-++|...... +.+.+.+|-+.
T Consensus 460 sPd~rfLlSc-SED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~-PlRifaghlsD 537 (707)
T KOG0263|consen 460 SPDRRFLLSC-SEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK-PLRIFAGHLSD 537 (707)
T ss_pred cccccceeec-cCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC-chhhhcccccc
Confidence 9999999999 99999999999999999999999999999999 58899999999999999998865 78899999999
Q ss_pred eEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe
Q psy8285 295 VCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE 373 (507)
Q Consensus 295 v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 373 (507)
|.|+.|+|+..++++|+ |.+|++||+.++ ..++.+.+|.++|.+++|||+| ..+++++. |+.|.+||+.++++
T Consensus 538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G---~~VRiF~GH~~~V~al~~Sp~G-r~LaSg~e--d~~I~iWDl~~~~~ 611 (707)
T KOG0263|consen 538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTG---NSVRIFTGHKGPVTALAFSPCG-RYLASGDE--DGLIKIWDLANGSL 611 (707)
T ss_pred cceEEECCcccccccCCCCceEEEEEcCCC---cEEEEecCCCCceEEEEEcCCC-ceEeeccc--CCcEEEEEcCCCcc
Confidence 99999999999999999 799999999999 8899999999999999999999 56666665 99999999999999
Q ss_pred eeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 374 KCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 374 ~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
+..+..| +.+.++.|+.+|..|++ |+.|++|++||+..
T Consensus 612 v~~l~~Ht~ti~SlsFS~dg~vLas--gg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 612 VKQLKGHTGTIYSLSFSRDGNVLAS--GGADNSVRLWDLTK 650 (707)
T ss_pred hhhhhcccCceeEEEEecCCCEEEe--cCCCCeEEEEEchh
Confidence 9988877 78999999999999999 88999999999864
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=257.29 Aligned_cols=287 Identities=19% Similarity=0.330 Sum_probs=238.7
Q ss_pred CCcccccceeeeeeccCcceeeeccccccccceeeecccC-Ccceeeee-cCcccceeeccccccccccCCccCCceeEe
Q psy8285 1 NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-GKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVV 78 (507)
Q Consensus 1 ~l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~-g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 78 (507)
.+.||+.+|+++.|.|-.-.||+|++ .|+.|+|||+.. ++|++++. |...|..++|+.++.
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~g--mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~--------------- 271 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGG--MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT--------------- 271 (503)
T ss_pred eccCCccccchhhhccceeeEEEecC--CCceEEEEEEecCcceehhhhcchhhhhhhhccccCC---------------
Confidence 36799999999999995556899998 899999999976 89999887 666766666652221
Q ss_pred ecCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhc
Q psy8285 79 DRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILE 158 (507)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (507)
T Consensus 272 -------------------------------------------------------------------------------- 271 (503)
T KOG0282|consen 272 -------------------------------------------------------------------------------- 271 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 159 APSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 159 ~~~~~~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
.+++++.|+.|++||+++|+....+. ....++|+.|+|++..++.+|..|+.|+.||+
T Consensus 272 ------------------~fLS~sfD~~lKlwDtETG~~~~~f~----~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi 329 (503)
T KOG0282|consen 272 ------------------SFLSASFDRFLKLWDTETGQVLSRFH----LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI 329 (503)
T ss_pred ------------------eeeeeecceeeeeeccccceEEEEEe----cCCCceeeecCCCCCcEEEEecCCCcEEEEec
Confidence 28899999999999999999887777 45678999999999555555599999999999
Q ss_pred CCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 239 QEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
++++.++.+..|-+.|..+.| +++.+++.+.|++++||+.+..-........+.-...++..+|++++++.-+ |+.|
T Consensus 330 Rs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i 409 (503)
T KOG0282|consen 330 RSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYI 409 (503)
T ss_pred cchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceE
Confidence 999999999999999999999 7999999999999999999987644444444455667899999999999988 7999
Q ss_pred EEEEcCCCCCCCCeeeecCCC--CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCC
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHL--SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQY 392 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~ 392 (507)
.++.+...-.......+.+|. +.-..+.|||||. ++++|.+ ||.+.+||.++-+.+..++.+ ..+..+.|+|..
T Consensus 410 ~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~-~l~SGds--dG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 410 AIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR-TLCSGDS--DGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE 486 (503)
T ss_pred EEEecccccccCHhhhhcceeccCceeeEEEcCCCC-eEEeecC--CccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence 999877654445556667774 4566889999995 5666665 999999999999999999888 789999999987
Q ss_pred CeEEEEeccCCCeEEEEe
Q psy8285 393 RELVTSHGKQDCSLKMWE 410 (507)
Q Consensus 393 ~~l~~~~g~~d~~i~v~d 410 (507)
.-.+++ ++.||.|++||
T Consensus 487 ~Skvat-~~w~G~Ikiwd 503 (503)
T KOG0282|consen 487 PSKVAT-CGWDGLIKIWD 503 (503)
T ss_pred cceeEe-cccCceeEecC
Confidence 665554 67999999996
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=240.51 Aligned_cols=276 Identities=17% Similarity=0.296 Sum_probs=243.4
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
.-+|.|++..|.+ +++++.|+++.|||+.+++... ++.| |...|..+++++...|++++ +.|+.|+.||+...+
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl--tltG-hi~~vr~vavS~rHpYlFs~-gedk~VKCwDLe~nk 226 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL--TLTG-HIETVRGVAVSKRHPYLFSA-GEDKQVKCWDLEYNK 226 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE--eecc-hhheeeeeeecccCceEEEe-cCCCeeEEEechhhh
Confidence 4568999999976 7777899999999999998764 4555 99999999999999999999 999999999999999
Q ss_pred eEEEEeecCccEEEEEee--CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8285 243 LIQKLRTHMHQVIAMCWN--GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d 319 (507)
.++.+.+|-..|.+++.. -+.|++|++|.++++||+++.. ....+.+|...|..+.+.|-...+++|+ |++|++||
T Consensus 227 vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWD 305 (460)
T KOG0285|consen 227 VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWD 305 (460)
T ss_pred hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCceEEecCCceEEEee
Confidence 999999999999999994 7899999999999999999976 6788999999999999999888899999 89999999
Q ss_pred cCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEE
Q psy8285 320 FRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTS 398 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~ 398 (507)
++.+ +...++..|...|.+++.+|.. +++++++ -..|+-|++..+..+..+.++ .-+.+++...|+ ++++
T Consensus 306 l~ag---kt~~tlt~hkksvral~lhP~e-~~fASas---~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~- 376 (460)
T KOG0285|consen 306 LRAG---KTMITLTHHKKSVRALCLHPKE-NLFASAS---PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVS- 376 (460)
T ss_pred eccC---ceeEeeecccceeeEEecCCch-hhhhccC---CccceeccCCccchhhccccccceeeeeeeccCc-eEEE-
Confidence 9998 8888899999999999999976 7788777 788999999999998888877 567888888776 4555
Q ss_pred eccCCCeEEEEeCCCccEEEEeec--------cccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 399 HGKQDCSLKMWEYPRLHLIEELKI--------HQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 399 ~g~~d~~i~v~d~~~~~~~~~~~~--------~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
|+++|.+..||.+++...+.... ....|.+.+|...|..|++|..|.+|++|+-..
T Consensus 377 -G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 377 -GGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred -cCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence 88999999999998865554421 234689999999999999999999999998654
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=259.63 Aligned_cols=242 Identities=16% Similarity=0.217 Sum_probs=202.8
Q ss_pred CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe-----eCCEEEEEecCCeEEEEECCCCC
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW-----NGNLLSCGTIGGNILHYDVRTHS 282 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~ 282 (507)
...+.+++.+|+|++||++ ..-|+++||++.+.+....+..|+..|.|+.| ..++||+++.|..|.+||....-
T Consensus 459 r~G~R~~~vSp~gqhLAsG-Dr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASG-DRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred ccceEEEEECCCcceeccc-CccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 4568999999999999999 89999999999998888899999999999999 36789999999999999998877
Q ss_pred cCceeeecCCCceEEEEEcCCC--CEEEEEe-CCcEEEEEcCCCCCCCC--eeeecCCCCCeeEEEEccCCCcEEEEEcc
Q psy8285 283 DYPTAITREGDVVCGLKWSPNG--RYLASGS-NNTVKIWDFRQLDAKRP--QVNNQCHLSAVKAIAWCPWEPTLLATGGG 357 (507)
Q Consensus 283 ~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~-d~~i~i~d~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 357 (507)
.+...+.+|...|+++.|.-.| ..+++++ |..|.+--.+....... ..+-......++.++..|..+++++.+.
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ- 616 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ- 616 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec-
Confidence 7888999999999999998876 4455555 76654432222100011 1111112356899999998866666665
Q ss_pred CCCCeEEEEeCCCCCeeeeeecC----CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEEC
Q psy8285 358 ICDQTVRLWNSMNGKEKCHVKTD----SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLS 433 (507)
Q Consensus 358 ~~d~~i~i~d~~~~~~~~~~~~~----~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s 433 (507)
|+.|+|||+.+++..+.|++. +....+...|.|.|+++ ...|.++.++|+.+++++..+.+|...|+.+.|.
T Consensus 617 --Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~at--Scsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 617 --DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLAT--SCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL 692 (1080)
T ss_pred --ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEE--eecCCceEEEEeccchhhhhhcCcchheeeeeec
Confidence 999999999999999999764 57889999999999999 5689999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCC
Q psy8285 434 PDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 434 ~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
+|.+.|++.+.||.|.||.+..
T Consensus 693 nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ccchhheeecCCceEEEEECch
Confidence 9999999999999999999974
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=232.34 Aligned_cols=232 Identities=19% Similarity=0.341 Sum_probs=194.5
Q ss_pred eeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 169 SGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 169 ~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
..+.|.+|+ +++++.|.+|+.||.++|+....+.. |...|..+.-+.-|..|+.+++.|+++++||+++.+.+++
T Consensus 94 M~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~---h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t 170 (338)
T KOG0265|consen 94 MELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKG---HTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT 170 (338)
T ss_pred EeeeeccCCCEEEEecCCceEEEEecccceeeehhcc---ccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc
Confidence 346666765 88899999999999999987655554 9999999997777888888779999999999998888777
Q ss_pred EeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q psy8285 247 LRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQL 323 (507)
Q Consensus 247 ~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~ 323 (507)
+. ...+++++.| .+..+.+|+-|+.|++||++... ....+.+|.+.|+.+..+|+|.++.+-+ |.++++||++..
T Consensus 171 ~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d-~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 171 FE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND-GLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred cc-cceeEEEEEecccccceeeccccCceeeeccccCc-ceEEeecccCceeeEEeccCCCccccccccceEEEEEeccc
Confidence 65 4567899999 57899999999999999999876 7888999999999999999999999988 899999999875
Q ss_pred CCCC-CeeeecCCC----CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEE
Q psy8285 324 DAKR-PQVNNQCHL----SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVT 397 (507)
Q Consensus 324 ~~~~-~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~ 397 (507)
...+ ++..+.+|. ......+|+|++.. +.+++. |+.+++||......+..+.++ +.|.+++|+|....|..
T Consensus 249 ~p~~R~v~if~g~~hnfeknlL~cswsp~~~~-i~ags~--dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils 325 (338)
T KOG0265|consen 249 APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTK-ITAGSA--DRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILS 325 (338)
T ss_pred CCCCceEEEeecchhhhhhhcceeeccCCCCc-cccccc--cceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEE
Confidence 3333 366666653 24567899999854 444444 999999999998999999988 78999999999999999
Q ss_pred EeccCCCeEEEEe
Q psy8285 398 SHGKQDCSLKMWE 410 (507)
Q Consensus 398 ~~g~~d~~i~v~d 410 (507)
++.|.+|++=+
T Consensus 326 --~~sdk~i~lge 336 (338)
T KOG0265|consen 326 --CSSDKTIYLGE 336 (338)
T ss_pred --eccCceeEeec
Confidence 77899888643
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=224.42 Aligned_cols=229 Identities=22% Similarity=0.447 Sum_probs=189.3
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc---e
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE---R 242 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~---~ 242 (507)
|.+++|+|.+ +.+++.|.++.||.-..++...+..++| |...|.|++|+++|.+||++ +.|..|-||.+..+ +
T Consensus 64 VRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEG-HEnEVK~Vaws~sG~~LATC-SRDKSVWiWe~deddEfe 141 (312)
T KOG0645|consen 64 VRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEG-HENEVKCVAWSASGNYLATC-SRDKSVWIWEIDEDDEFE 141 (312)
T ss_pred eeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeec-cccceeEEEEcCCCCEEEEe-eCCCeEEEEEecCCCcEE
Confidence 5678999987 5556799999999999999999999999 99999999999999999999 99999999998744 5
Q ss_pred eEEEEeecCccEEEEEee--CCEEEEEecCCeEEEEECCCC--CcCceeeecCCCceEEEEEcCCCCEEEEEeC-CcEEE
Q psy8285 243 LIQKLRTHMHQVIAMCWN--GNLLSCGTIGGNILHYDVRTH--SDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKI 317 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i 317 (507)
+...++.|...|..+.|. ..+|++++.|.+|++|+-... -.+...+.+|...|.+++|++.|..+++++| ++++|
T Consensus 142 c~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~I 221 (312)
T KOG0645|consen 142 CIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSI 221 (312)
T ss_pred EEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEe
Confidence 778899999999999995 489999999999999987632 2457788999999999999999999999995 99999
Q ss_pred EEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC--Cee----ee--eecCCCeEEEEEC
Q psy8285 318 WDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG--KEK----CH--VKTDSQVTSILWS 389 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--~~~----~~--~~~~~~i~~~~~s 389 (507)
|..... + ...|..+++.+.|. ++ +++++++ |+.|++|.-... ++. .. ..+...|++++|.
T Consensus 222 w~~~~~-----~--~~~~sr~~Y~v~W~-~~--~IaS~gg--D~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~ 289 (312)
T KOG0645|consen 222 WRLYTD-----L--SGMHSRALYDVPWD-NG--VIASGGG--DDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWN 289 (312)
T ss_pred eeeccC-----c--chhcccceEeeeec-cc--ceEeccC--CCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEc
Confidence 986532 1 12277899999998 44 6777776 999999986543 111 11 1123589999999
Q ss_pred CC-CCeEEEEeccCCCeEEEEeCC
Q psy8285 390 EQ-YRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 390 ~~-~~~l~~~~g~~d~~i~v~d~~ 412 (507)
|. ...|++ |+.||.|++|.+.
T Consensus 290 p~~~~~L~s--~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 290 PKVSNRLAS--GGDDGIVNFWELE 311 (312)
T ss_pred CCCCCceee--cCCCceEEEEEec
Confidence 95 566676 8899999999864
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=224.91 Aligned_cols=265 Identities=17% Similarity=0.233 Sum_probs=229.6
Q ss_pred cCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCC
Q psy8285 203 YPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRT 280 (507)
Q Consensus 203 ~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~ 280 (507)
+.+ +.++|..+.|+-+|+|.+++ +.|.+|++|+...+.+++++.+|...|..++. |+..|++++.|..+.+||+++
T Consensus 13 l~~-~qgaV~avryN~dGnY~ltc-GsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 13 LDC-AQGAVRAVRYNVDGNYCLTC-GSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred ecc-cccceEEEEEccCCCEEEEc-CCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 344 88999999999999999999 99999999999999999999999999998877 899999999999999999999
Q ss_pred CCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC
Q psy8285 281 HSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC 359 (507)
Q Consensus 281 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 359 (507)
++ ..+.+.+|...|+.++|+.+...+++|+ |..+++||.+.. ..++++.+......|.++.... +.+++|+.
T Consensus 91 Gk-v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~-s~ePiQildea~D~V~Si~v~~---heIvaGS~-- 163 (307)
T KOG0316|consen 91 GK-VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR-SFEPIQILDEAKDGVSSIDVAE---HEIVAGSV-- 163 (307)
T ss_pred Ce-eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccC-CCCccchhhhhcCceeEEEecc---cEEEeecc--
Confidence 97 7788999999999999999999999999 899999999975 3478888888889999999864 45666654
Q ss_pred CCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecccccee--EEEECCCCC
Q psy8285 360 DQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERIL--SAVLSPDQT 437 (507)
Q Consensus 360 d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~--~~~~s~~~~ 437 (507)
||+++.||++.|+.....- ..+|++++|+++++..++ ++.|+++++.|-.+|+.+..+++|.+.-. ..+++....
T Consensus 164 DGtvRtydiR~G~l~sDy~-g~pit~vs~s~d~nc~La--~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt 240 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSSDYF-GHPITSVSFSKDGNCSLA--SSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT 240 (307)
T ss_pred CCcEEEEEeecceeehhhc-CCcceeEEecCCCCEEEE--eeccceeeecccchhHHHHHhcccccceeeeeeeecccce
Confidence 9999999999998654432 358999999999999999 88999999999999999999999987544 455677778
Q ss_pred EEEEEeCCCcEEEEecCCCCcccceeecCCC--cceEEeeccCc
Q psy8285 438 CVAAASADETISIWNCFPRDKKRKARQVGSG--SSLEFAILKQP 479 (507)
Q Consensus 438 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 479 (507)
.+++|++||.|++||+.+.....+++....+ .++.+.|....
T Consensus 241 hV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~ 284 (307)
T KOG0316|consen 241 HVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDD 284 (307)
T ss_pred eEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccc
Confidence 9999999999999999999988887766544 44455554433
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=252.68 Aligned_cols=298 Identities=18% Similarity=0.228 Sum_probs=242.7
Q ss_pred eeeeeeCCCC----EEEEEcCCeEEEEECCC-Cce------eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEE
Q psy8285 168 TSGLDWGYHD----TLAVALDTSVYTWNTKT-NKT------QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLW 236 (507)
Q Consensus 168 i~~~~~s~~~----~~~~~~~~~i~iw~~~~-~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iw 236 (507)
+.+++|-|.+ .+..-.++.+..|.++. +.. ...++..| |...|.+++++.+...++++ ..+.+++|
T Consensus 323 iks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~G-HR~dVRsl~vS~d~~~~~Sg--a~~SikiW 399 (888)
T KOG0306|consen 323 IKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGG-HRSDVRSLCVSSDSILLASG--AGESIKIW 399 (888)
T ss_pred eeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeecc-chhheeEEEeecCceeeeec--CCCcEEEE
Confidence 5678887753 33446788888888765 221 22356677 99999999999887666655 78899999
Q ss_pred eCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CC
Q psy8285 237 HEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NN 313 (507)
Q Consensus 237 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~ 313 (507)
+..+.++++++... -+.+..| .+++++.|...|.+.+||+.+.. .......|.+.|.+++.+||++.+++|+ |.
T Consensus 400 n~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~-l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk 476 (888)
T KOG0306|consen 400 NRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASAS-LVETIRAHDGAIWSISLSPDNKGFVTGSADK 476 (888)
T ss_pred EccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhh-hhhhhhccccceeeeeecCCCCceEEecCCc
Confidence 99999999999755 6777777 68899999999999999999876 5667779999999999999999999999 89
Q ss_pred cEEEEEcCCCCC----CCCe------eeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CC
Q psy8285 314 TVKIWDFRQLDA----KRPQ------VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQ 382 (507)
Q Consensus 314 ~i~i~d~~~~~~----~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~ 382 (507)
+|++||..-... .+.. .++ .-...|.|+.+|||++.+.++- .|.++++|-+.+.+....+-+| -+
T Consensus 477 tVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsL---LdnTVkVyflDtlKFflsLYGHkLP 552 (888)
T KOG0306|consen 477 TVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSL---LDNTVKVYFLDTLKFFLSLYGHKLP 552 (888)
T ss_pred EEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEe---ccCeEEEEEecceeeeeeecccccc
Confidence 999999753211 0111 111 2456899999999996555544 4999999999999988888777 69
Q ss_pred eEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccce
Q psy8285 383 VTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKA 462 (507)
Q Consensus 383 i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 462 (507)
|.|+.++||++.+++ |+.|..|+||-+.-|.+-+++-+|+..|.++.|-|+...+.+++.|+.|+-||-..-+...++
T Consensus 553 V~smDIS~DSklivT--gSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L 630 (888)
T KOG0306|consen 553 VLSMDISPDSKLIVT--GSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL 630 (888)
T ss_pred eeEEeccCCcCeEEe--ccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee
Confidence 999999999999999 899999999999999999999999999999999999999999999999999999888888776
Q ss_pred ee-cCCCcceEEeecc
Q psy8285 463 RQ-VGSGSSLEFAILK 477 (507)
Q Consensus 463 ~~-~~~~~~~~~~~~~ 477 (507)
.. ...+..++..|.+
T Consensus 631 ~~H~~ev~cLav~~~G 646 (888)
T KOG0306|consen 631 DGHHSEVWCLAVSPNG 646 (888)
T ss_pred ccchheeeeeEEcCCC
Confidence 53 3445555555544
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=249.12 Aligned_cols=228 Identities=24% Similarity=0.460 Sum_probs=192.8
Q ss_pred eeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE
Q psy8285 170 GLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 170 ~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~ 247 (507)
.+.|++++ +++++.++.|++|++.+++...... . |...+.++.|+|++++++++ +.+|.+.+||+.+++....+
T Consensus 56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~--~-~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLT--G-HTSYVSSVAFSPDGRILSSS-SRDKTIKVWDVETGKCLTTL 131 (289)
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEe--c-cCCcEEEEEEcCCCCEEEEe-cCCCeEEEEECCCcEEEEEe
Confidence 35666655 6666789999999998876554444 3 77899999999998877777 77999999999988988888
Q ss_pred eecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC
Q psy8285 248 RTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLD 324 (507)
Q Consensus 248 ~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~ 324 (507)
..|...+.++.| ++.++++++.++.|++||++..+ ....+..|...+.++.|+|+++.+++++ ++.|++||++.+
T Consensus 132 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~- 209 (289)
T cd00200 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG- 209 (289)
T ss_pred ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc-cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC-
Confidence 889999999999 46778777779999999998765 5566778888999999999998888888 699999999986
Q ss_pred CCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCC
Q psy8285 325 AKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQD 403 (507)
Q Consensus 325 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d 403 (507)
+.+..+..|...+.++.|+|++ .++++++. ++.+++||+.+++....+..+ ..+.+++|+|+++++++ ++.|
T Consensus 210 --~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~--~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d 282 (289)
T cd00200 210 --KCLGTLRGHENGVNSVAFSPDG-YLLASGSE--DGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLAS--GSAD 282 (289)
T ss_pred --ceecchhhcCCceEEEEEcCCC-cEEEEEcC--CCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEE--ecCC
Confidence 6667776788899999999985 56666554 999999999998888887765 68999999999999999 7899
Q ss_pred CeEEEEe
Q psy8285 404 CSLKMWE 410 (507)
Q Consensus 404 ~~i~v~d 410 (507)
+.+++|+
T Consensus 283 ~~i~iw~ 289 (289)
T cd00200 283 GTIRIWD 289 (289)
T ss_pred CeEEecC
Confidence 9999996
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=240.29 Aligned_cols=294 Identities=15% Similarity=0.216 Sum_probs=234.1
Q ss_pred CccccCCchhhhcCCCcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCC-ceeEEEecCCCCCCceEEEEEccCCCe
Q psy8285 146 PRKVKAKPERILEAPSIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTN-KTQLLVEYPTYDNAYISCVAWKPRTTD 222 (507)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~ 222 (507)
++.+|....+++..+ .-.|--+.||++| +++++.|.+..+|.+... +.....++.+ |..+|..+.||||.++
T Consensus 209 ~~qip~qt~qil~~h----tdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg-h~~~V~yi~wSPDdry 283 (519)
T KOG0293|consen 209 RLQIPSQTWQILQDH----TDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG-HSQPVSYIMWSPDDRY 283 (519)
T ss_pred cccCCchhhhhHhhC----CCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec-ccCceEEEEECCCCCe
Confidence 344444444444433 1235568899998 555679999999997654 3444566777 9999999999999999
Q ss_pred EEEEeCCCCcEEEEeCCCceeEEEEee-cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecC-CCceEEE
Q psy8285 223 LAVTNTCTEYIDLWHEQEERLIQKLRT-HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITRE-GDVVCGL 298 (507)
Q Consensus 223 l~~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~ 298 (507)
|+++ +.+..+.+||+.+|.....+.. +...+.+++| |+..+++|+.|+.+..||++... .....+. ...|.++
T Consensus 284 LlaC-g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dl 360 (519)
T KOG0293|consen 284 LLAC-GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDL 360 (519)
T ss_pred EEec-CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEE
Confidence 9999 8888999999999998877764 5678899999 89999999999999999998754 2333322 2468999
Q ss_pred EEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeee
Q psy8285 299 KWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHV 377 (507)
Q Consensus 299 ~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 377 (507)
+.++||+++++.. |..|++|+.++. .... +.....+|+++..|.+++..++.-. +..+++||+...+.+..+
T Consensus 361 ait~Dgk~vl~v~~d~~i~l~~~e~~---~dr~-lise~~~its~~iS~d~k~~LvnL~---~qei~LWDl~e~~lv~kY 433 (519)
T KOG0293|consen 361 AITYDGKYVLLVTVDKKIRLYNREAR---VDRG-LISEEQPITSFSISKDGKLALVNLQ---DQEIHLWDLEENKLVRKY 433 (519)
T ss_pred EEcCCCcEEEEEecccceeeechhhh---hhhc-cccccCceeEEEEcCCCcEEEEEcc---cCeeEEeecchhhHHHHh
Confidence 9999999988777 899999999874 2222 3335678999999999977777554 999999999988888887
Q ss_pred ecCC---CeEEEEECC-CCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCC-CCEEEEEeCCCcEEEEe
Q psy8285 378 KTDS---QVTSILWSE-QYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPD-QTCVAAASADETISIWN 452 (507)
Q Consensus 378 ~~~~---~i~~~~~s~-~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~~dg~i~iw~ 452 (507)
.++. -+..-+|-- +..++++ |++|+.|+||+..+++++.++.||...|++++|+|. ...+|++|+||+|+||.
T Consensus 434 ~Ghkq~~fiIrSCFgg~~~~fiaS--GSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 434 FGHKQGHFIIRSCFGGGNDKFIAS--GSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred hcccccceEEEeccCCCCcceEEe--cCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 7762 344455554 4467777 999999999999999999999999999999999995 56789999999999999
Q ss_pred cCCC
Q psy8285 453 CFPR 456 (507)
Q Consensus 453 ~~~~ 456 (507)
....
T Consensus 512 ~~~~ 515 (519)
T KOG0293|consen 512 PSDN 515 (519)
T ss_pred CCcc
Confidence 8754
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=229.70 Aligned_cols=278 Identities=18% Similarity=0.235 Sum_probs=246.8
Q ss_pred eeeeeeCC---CC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 168 TSGLDWGY---HD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 168 i~~~~~s~---~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
|..++||| +| +++++.|+.-.+-+-++|...-. +.| |.+.|.+..++.+..+.+++ +.|-+-++||.-+|.
T Consensus 17 vvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigt--feg-hkgavw~~~l~~na~~aasa-aadftakvw~a~tgd 92 (334)
T KOG0278|consen 17 VVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGT--FEG-HKGAVWSATLNKNATRAASA-AADFTAKVWDAVTGD 92 (334)
T ss_pred eeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEe--eec-cCcceeeeecCchhhhhhhh-cccchhhhhhhhhhh
Confidence 44577775 66 66778999888888888887654 455 99999999999888887877 899999999999999
Q ss_pred eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8285 243 LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d 319 (507)
.+..+. |..-|.+++| |.++|++|+.+..++|||++..+.+...+.+|.+.|..+.|....+.|++.. |++|++||
T Consensus 93 elhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD 171 (334)
T KOG0278|consen 93 ELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWD 171 (334)
T ss_pred hhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEE
Confidence 888876 8888999999 7889999999999999999998888889999999999999999888888877 59999999
Q ss_pred cCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEe
Q psy8285 320 FRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSH 399 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 399 (507)
.+++ ..++++. ...+|+++..+++| .+++++. .+.|.+||..+...++.++.+..|.+.+.+|+...+++
T Consensus 172 ~rTg---t~v~sL~-~~s~VtSlEvs~dG-~ilTia~---gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVa-- 241 (334)
T KOG0278|consen 172 HRTG---TEVQSLE-FNSPVTSLEVSQDG-RILTIAY---GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVA-- 241 (334)
T ss_pred eccC---cEEEEEe-cCCCCcceeeccCC-CEEEEec---CceeEEeccccccceeeccCccccccccccCCCceEEe--
Confidence 9998 7777776 67789999999999 5666665 68999999999999999999999999999999988888
Q ss_pred ccCCCeEEEEeCCCccEEEEe-eccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccc
Q psy8285 400 GKQDCSLKMWEYPRLHLIEEL-KIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKR 460 (507)
Q Consensus 400 g~~d~~i~v~d~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 460 (507)
|++|..++.||..+++.+..+ ++|.++|.++.|+|||...++||.||+|++|...+++...
T Consensus 242 Gged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~ 303 (334)
T KOG0278|consen 242 GGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYG 303 (334)
T ss_pred cCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCchh
Confidence 999999999999999999986 8999999999999999999999999999999998877654
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=249.28 Aligned_cols=274 Identities=17% Similarity=0.324 Sum_probs=229.3
Q ss_pred ceeeeeeCC-CC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 167 YTSGLDWGY-HD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 167 ~i~~~~~s~-~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
-|+++.|.| .+ +++++.|+.|+||++-+ ....+.++.| |..+|.+++|+++|..++++ +.|+.+++||+++|++
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf~g-H~k~Vrd~~~s~~g~~fLS~-sfD~~lKlwDtETG~~ 292 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTFKG-HRKPVRDASFNNCGTSFLSA-SFDRFLKLWDTETGQV 292 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhhhc-chhhhhhhhccccCCeeeee-ecceeeeeeccccceE
Confidence 478899999 44 77788999999999977 2234555666 99999999999999999999 9999999999999999
Q ss_pred EEEEeecCccEEEEEe--e-CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC-CcEEEEE
Q psy8285 244 IQKLRTHMHQVIAMCW--N-GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWD 319 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d 319 (507)
+..+. ....++|+.| + .+.+++|+.|+.|+.||+++++ .......|-+.|..+.|-++|+.+++.+| +.++||+
T Consensus 293 ~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe 370 (503)
T KOG0282|consen 293 LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWE 370 (503)
T ss_pred EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEE
Confidence 98886 3456788888 4 5899999999999999999987 67777889999999999999999999996 9999999
Q ss_pred cCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC---eeeeeecC---CCeEEEEECCCCC
Q psy8285 320 FRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK---EKCHVKTD---SQVTSILWSEQYR 393 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---~~~~~~~~---~~i~~~~~s~~~~ 393 (507)
.+.+-..+.+... +.....++..+|+++.+++ .++|..|.+|.+...- ....++++ +.-..+.|||||.
T Consensus 371 ~~~~v~ik~i~~~--~~hsmP~~~~~P~~~~~~a---Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~ 445 (503)
T KOG0282|consen 371 NRIPVPIKNIADP--EMHTMPCLTLHPNGKWFAA---QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR 445 (503)
T ss_pred cCCCccchhhcch--hhccCcceecCCCCCeehh---hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCC
Confidence 9886222222222 3335668999999976666 4569999999975432 22344444 5678899999999
Q ss_pred eEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCC-CCEEEEEeCCCcEEEEe
Q psy8285 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPD-QTCVAAASADETISIWN 452 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~~dg~i~iw~ 452 (507)
+|++ |+.||.+.+||.++-+.+..+++|.+++..+.|+|. ...+|+++.||.|++|+
T Consensus 446 ~l~S--GdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 446 TLCS--GDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eEEe--ecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999 999999999999999999999999999999999995 45899999999999996
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=232.66 Aligned_cols=280 Identities=19% Similarity=0.268 Sum_probs=223.7
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeeecCcccceeeccccccccccCCccCCceeEeecC
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRESSRSKMVNTDRYVVDRS 81 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 81 (507)
|.||++.|+|+.||.||.+ ||||. -+|.|+||.+.+|....++. ..+..
T Consensus 102 ltgHKDSVt~~~Fshdgtl-LATGd--msG~v~v~~~stg~~~~~~~--~e~~d-------------------------- 150 (399)
T KOG0296|consen 102 LTGHKDSVTCCSFSHDGTL-LATGD--MSGKVLVFKVSTGGEQWKLD--QEVED-------------------------- 150 (399)
T ss_pred ecCCCCceEEEEEccCceE-EEecC--CCccEEEEEcccCceEEEee--cccCc--------------------------
Confidence 6799999999999999997 99999 89999999999998655432 11111
Q ss_pred CccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCCC
Q psy8285 82 SYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPS 161 (507)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (507)
T Consensus 151 -------------------------------------------------------------------------------- 150 (399)
T KOG0296|consen 151 -------------------------------------------------------------------------------- 150 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC
Q psy8285 162 IINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ 239 (507)
Q Consensus 162 ~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~ 239 (507)
+.-+.|+|.+ ++|++.||.+..|.+.++...+++ .| |+.++++=.|.|+|++++++ ..||+|++||+.
T Consensus 151 ------ieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~--~G-h~~~ct~G~f~pdGKr~~tg-y~dgti~~Wn~k 220 (399)
T KOG0296|consen 151 ------IEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM--SG-HNSPCTCGEFIPDGKRILTG-YDDGTIIVWNPK 220 (399)
T ss_pred ------eEEEEecccccEEEeecCCCcEEEEECCCcceeeEe--cC-CCCCcccccccCCCceEEEE-ecCceEEEEecC
Confidence 2237788865 777889999999999887555554 45 99999999999999999999 999999999999
Q ss_pred CceeEEEEee-cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC-------ceeeecCCCceEEEEEcC---CCCE
Q psy8285 240 EERLIQKLRT-HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY-------PTAITREGDVVCGLKWSP---NGRY 306 (507)
Q Consensus 240 ~~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~-------~~~~~~~~~~v~~~~~~~---~~~~ 306 (507)
++.++..+.+ ......++.+ .+..++.|+.++.+++-+..+++.. ......+...+.|+.+.| .-.+
T Consensus 221 tg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL 300 (399)
T KOG0296|consen 221 TGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPL 300 (399)
T ss_pred CCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccch
Confidence 9999888774 2334556666 6888888888888887776665411 111223444555555555 4566
Q ss_pred EEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeE
Q psy8285 307 LASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVT 384 (507)
Q Consensus 307 l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~ 384 (507)
.|+|+ ||+|.|||+... .++..-.|..+|..+.|-+ ..++++++. +|.|+.||.++|+++..+.+| ..|.
T Consensus 301 ~A~G~vdG~i~iyD~a~~----~~R~~c~he~~V~~l~w~~-t~~l~t~c~---~g~v~~wDaRtG~l~~~y~GH~~~Il 372 (399)
T KOG0296|consen 301 AACGSVDGTIAIYDLAAS----TLRHICEHEDGVTKLKWLN-TDYLLTACA---NGKVRQWDARTGQLKFTYTGHQMGIL 372 (399)
T ss_pred hhcccccceEEEEecccc----hhheeccCCCceEEEEEcC-cchheeecc---CceEEeeeccccceEEEEecCchhee
Confidence 78888 899999999875 4455556999999999999 557887776 999999999999999999988 6899
Q ss_pred EEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 385 SILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 385 ~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
+++++|+.+++++ ++.|+..+||+..
T Consensus 373 ~f~ls~~~~~vvT--~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 373 DFALSPQKRLVVT--VSDDNTALVFEVP 398 (399)
T ss_pred EEEEcCCCcEEEE--ecCCCeEEEEecC
Confidence 9999999999999 8899999999864
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=274.66 Aligned_cols=233 Identities=18% Similarity=0.289 Sum_probs=190.0
Q ss_pred eeeeeeCCC--C-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEcc-CCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 168 TSGLDWGYH--D-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKP-RTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 168 i~~~~~s~~--~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
+.+++|++. . +++++.|+.|++||+.+++....+ .+ |...|++++|+| ++.+|+++ +.||.|++||+.++..
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~--~~-H~~~V~~l~~~p~~~~~L~Sg-s~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM--KE-HEKRVWSIDYSSADPTLLASG-SDDGSVKLWSINQGVS 610 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe--cC-CCCCEEEEEEcCCCCCEEEEE-cCCCEEEEEECCCCcE
Confidence 445778763 2 666779999999999887765443 44 999999999997 67888888 9999999999999988
Q ss_pred EEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8285 244 IQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d 319 (507)
+..+..+ ..+.++.| ++.+|++|+.||.|++||++........+.+|...|.++.|. ++.++++++ |++|++||
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD 688 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEe
Confidence 8888754 67889988 488999999999999999987654566778899999999997 677888888 79999999
Q ss_pred cCCCC---CCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeee--------------cCCC
Q psy8285 320 FRQLD---AKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK--------------TDSQ 382 (507)
Q Consensus 320 ~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--------------~~~~ 382 (507)
++... ...++..+.+|...+..+.|+|++. ++++++. |+.|++|+.....++..+. ....
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~--D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 765 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDG-YIATGSE--TNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF 765 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeC--CCEEEEEECCCCCceEEEecccCCcccccccCCCCcE
Confidence 97531 1256778889999999999999985 5666654 9999999987665443221 1135
Q ss_pred eEEEEECCCCCeEEEEeccCCCeEEEEeC
Q psy8285 383 VTSILWSEQYRELVTSHGKQDCSLKMWEY 411 (507)
Q Consensus 383 i~~~~~s~~~~~l~~~~g~~d~~i~v~d~ 411 (507)
|.+++|+|++..|++ |+.+|.|+||++
T Consensus 766 V~~v~ws~~~~~lva--~~~dG~I~i~~~ 792 (793)
T PLN00181 766 ISSVCWRGQSSTLVA--ANSTGNIKILEM 792 (793)
T ss_pred EEEEEEcCCCCeEEE--ecCCCcEEEEec
Confidence 899999999999999 789999999986
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=216.25 Aligned_cols=270 Identities=15% Similarity=0.232 Sum_probs=231.1
Q ss_pred cceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 166 FYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 166 ~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
-.|.++.|+-+| .++++.|.+|++|++..+..++.+.. |...|..++.+.|+..++++ +.|..+.+||+++|+.
T Consensus 18 gaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg---hG~EVlD~~~s~Dnskf~s~-GgDk~v~vwDV~TGkv 93 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG---HGHEVLDAALSSDNSKFASC-GGDKAVQVWDVNTGKV 93 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC---CCceeeeccccccccccccC-CCCceEEEEEcccCee
Confidence 347788898887 78889999999999999987766554 88899999999999999999 8999999999999999
Q ss_pred EEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCC-cCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8285 244 IQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHS-DYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d 319 (507)
++.+.+|...|..+.| +...+++|+.|..+++||.++.. ++.+.+......|.++..+ +..|++|+ ||+++.||
T Consensus 94 ~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtyd 171 (307)
T KOG0316|consen 94 DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYD 171 (307)
T ss_pred eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEE
Confidence 9999999999999999 47799999999999999999765 3566777778889888876 45788888 89999999
Q ss_pred cCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC---CeEEEEECCCCCeEE
Q psy8285 320 FRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS---QVTSILWSEQYRELV 396 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---~i~~~~~s~~~~~l~ 396 (507)
++.+ +..... ...+|++++|+++++..++++- |+++++.|-.+|+.+...+++. .-..++++.....++
T Consensus 172 iR~G---~l~sDy--~g~pit~vs~s~d~nc~La~~l---~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~ 243 (307)
T KOG0316|consen 172 IRKG---TLSSDY--FGHPITSVSFSKDGNCSLASSL---DSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVF 243 (307)
T ss_pred eecc---eeehhh--cCCcceeEEecCCCCEEEEeec---cceeeecccchhHHHHHhcccccceeeeeeeecccceeEE
Confidence 9998 554444 4568999999999988888554 9999999999999999988872 345677888888888
Q ss_pred EEeccCCCeEEEEeCCCccEEEEeeccccc-eeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 397 TSHGKQDCSLKMWEYPRLHLIEELKIHQER-ILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 397 ~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~-i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
. |++||.|++||+.....+..+..+... |.++.++|.-..|+++... .+.+|-
T Consensus 244 s--gSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 244 S--GSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFWY 297 (307)
T ss_pred e--ccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceecee
Confidence 8 999999999999999999999988877 8999999987777777644 455664
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=246.23 Aligned_cols=281 Identities=14% Similarity=0.244 Sum_probs=249.0
Q ss_pred ceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 167 YTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.|.+++++|.. ++++-.+|.|.|||.++....+.++. .+-+|.+..|-+..+.++++ +.|+.|+||+.++++.+
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV---~~~PvRa~kfiaRknWiv~G-sDD~~IrVfnynt~ekV 90 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV---SEVPVRAAKFIARKNWIVTG-SDDMQIRVFNYNTGEKV 90 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee---cccchhhheeeeccceEEEe-cCCceEEEEecccceee
Confidence 36789999987 77777999999999999888888877 67899999999999999999 99999999999999999
Q ss_pred EEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC-CCCEEEEEe-CCcEEEEEc
Q psy8285 245 QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP-NGRYLASGS-NNTVKIWDF 320 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~ 320 (507)
..+..|..-|.+++. ...++++++.|-.|++||....-.+.+.+.+|...|.+++|+| |.+.+|+++ |++|++|.+
T Consensus 91 ~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWsl 170 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSL 170 (794)
T ss_pred EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEc
Confidence 999999999999999 4678999999999999999988878899999999999999999 567899999 999999999
Q ss_pred CCCCCCCCeeeecCCCCCeeEEEEccCCCc-EEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEE
Q psy8285 321 RQLDAKRPQVNNQCHLSAVKAIAWCPWEPT-LLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTS 398 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~ 398 (507)
.+. .+..++.+|...|+++.+-+-|.. .+++++. |.++++||..+..+++++.+| ..|..+.|+|.-..+++
T Consensus 171 gs~---~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD--D~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis- 244 (794)
T KOG0276|consen 171 GSP---HPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD--DLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS- 244 (794)
T ss_pred CCC---CCceeeeccccCcceEEeccCCCcceEEecCC--CceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE-
Confidence 987 889999999999999999886532 4455543 999999999999999999988 78999999999999999
Q ss_pred eccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 399 HGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 399 ~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
|++||+++||+..+.++..++.-.-.++++++-.+.++.++.|.+.|.|. .++...++.
T Consensus 245 -gsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP~ 303 (794)
T KOG0276|consen 245 -GSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEPA 303 (794)
T ss_pred -ecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE-EEccCCCCc
Confidence 99999999999999988888887788999999999888888888777553 344444433
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=240.61 Aligned_cols=238 Identities=16% Similarity=0.355 Sum_probs=211.9
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCce
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPT 286 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 286 (507)
....|.|+.+. ...+++| ..|.+|+|||.++..++..+.+|.+.|.|+.|+.+.+++|+.|.+|++||.++++ +..
T Consensus 196 ~skgVYClQYD--D~kiVSG-lrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge-~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSG-LRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGE-PLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcc-cccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCc-hhh
Confidence 45679999884 5678888 9999999999999999999999999999999999999999999999999999987 788
Q ss_pred eeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEE
Q psy8285 287 AITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRL 365 (507)
Q Consensus 287 ~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i 365 (507)
.+..|...|..+.|+ +.++++++ |.++.+||+...........+.+|...|+.+.|+. .+++++++ |.+|++
T Consensus 272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASg--DRTikv 344 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASG--DRTIKV 344 (499)
T ss_pred HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecC--CceEEE
Confidence 888999999999997 45888888 79999999998765566778889999999999964 36666666 999999
Q ss_pred EeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeC
Q psy8285 366 WNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 366 ~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 444 (507)
|++.+++.++++.+| ..|.|+++ .++++++ |+.|++|++||+..|.++..+++|..-|.++.| |.+.+++|+.
T Consensus 345 W~~st~efvRtl~gHkRGIAClQY--r~rlvVS--GSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaY 418 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQY--RDRLVVS--GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAY 418 (499)
T ss_pred Eeccceeeehhhhcccccceehhc--cCeEEEe--cCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccc
Confidence 999999999999888 57888877 4777887 999999999999999999999999999999999 5678999999
Q ss_pred CCcEEEEecCCCCcccc
Q psy8285 445 DETISIWNCFPRDKKRK 461 (507)
Q Consensus 445 dg~i~iw~~~~~~~~~~ 461 (507)
||.|++||+..+...+.
T Consensus 419 DGkikvWdl~aaldpra 435 (499)
T KOG0281|consen 419 DGKIKVWDLQAALDPRA 435 (499)
T ss_pred cceEEEEecccccCCcc
Confidence 99999999998765543
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=237.76 Aligned_cols=232 Identities=16% Similarity=0.322 Sum_probs=188.4
Q ss_pred eeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE
Q psy8285 170 GLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 170 ~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~ 247 (507)
-+.||||. +++++.+..+.+||..+|.....+.-. +...+.+++|.|||..+++| +.|+.+..||+.. +.+...
T Consensus 274 yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~--~~~S~~sc~W~pDg~~~V~G-s~dr~i~~wdlDg-n~~~~W 349 (519)
T KOG0293|consen 274 YIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG--LGFSVSSCAWCPDGFRFVTG-SPDRTIIMWDLDG-NILGNW 349 (519)
T ss_pred EEEECCCCCeEEecCchHheeeccCCcchhhhhcccC--cCCCcceeEEccCCceeEec-CCCCcEEEecCCc-chhhcc
Confidence 46777764 888888889999999999876655432 56889999999999999999 9999999999864 444444
Q ss_pred ee-cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q psy8285 248 RT-HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQL 323 (507)
Q Consensus 248 ~~-~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~ 323 (507)
++ ....|.+++. ||+++++.+.|..|++++..+.. ...+.....+|++++.|.|++++++-- +..+++||++..
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~--dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~ 427 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV--DRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN 427 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEecccceeeechhhhh--hhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchh
Confidence 44 3356788876 89999999999999999988754 222444567899999999999988766 699999999976
Q ss_pred CCCCCeeeecCCCCC--eeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEec
Q psy8285 324 DAKRPQVNNQCHLSA--VKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHG 400 (507)
Q Consensus 324 ~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g 400 (507)
..+..+.+|... +..-+|--....++++|++ |+.|+||+..+++++..+.+| ..+++++|+|...+++++ +
T Consensus 428 ---~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE--D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~AS-a 501 (519)
T KOG0293|consen 428 ---KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE--DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFAS-A 501 (519)
T ss_pred ---hHHHHhhcccccceEEEeccCCCCcceEEecCC--CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhc-c
Confidence 777888888654 3344555545578888876 999999999999999999999 679999999999887766 8
Q ss_pred cCCCeEEEEeCCC
Q psy8285 401 KQDCSLKMWEYPR 413 (507)
Q Consensus 401 ~~d~~i~v~d~~~ 413 (507)
++||+|+||....
T Consensus 502 sDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 502 SDDGTIRIWGPSD 514 (519)
T ss_pred CCCCeEEEecCCc
Confidence 9999999998653
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=271.46 Aligned_cols=276 Identities=15% Similarity=0.257 Sum_probs=221.6
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCc----e--eEEEecCCCCCCceEEEEEccC-CCeEEEEeCCCCcEEE
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNK----T--QLLVEYPTYDNAYISCVAWKPR-TTDLAVTNTCTEYIDL 235 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~----~--~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~dg~i~i 235 (507)
...|.+++|+|++ +++++.|+.|+||+..... . .....+. +...+.+++|+|. +.+|+++ +.||.|++
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~las~-~~Dg~v~l 559 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA--SRSKLSGICWNSYIKSQVASS-NFEGVVQV 559 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec--ccCceeeEEeccCCCCEEEEE-eCCCeEEE
Confidence 4458899999987 6677899999999975421 0 1122222 4567999999875 6778888 99999999
Q ss_pred EeCCCceeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEc-CCCCEEEEEe
Q psy8285 236 WHEQEERLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWS-PNGRYLASGS 311 (507)
Q Consensus 236 wd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 311 (507)
||+.+++.+..+.+|...|++++| ++.+|++|+.|+.|++||++++. ....+.. ...+.++.|+ +++.+|++|+
T Consensus 560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~~~-~~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTIKT-KANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEEec-CCCeEEEEEeCCCCCEEEEEe
Confidence 999999999999999999999999 46799999999999999998765 3444443 4678999995 5789999999
Q ss_pred -CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC------CeeeeeecC-CCe
Q psy8285 312 -NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG------KEKCHVKTD-SQV 383 (507)
Q Consensus 312 -d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~------~~~~~~~~~-~~i 383 (507)
|+.|++||++... .++..+.+|...|.++.|. ++..++ +++. |++|++||++.+ +++..+.++ ..+
T Consensus 638 ~dg~I~iwD~~~~~--~~~~~~~~h~~~V~~v~f~-~~~~lv-s~s~--D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i 711 (793)
T PLN00181 638 ADHKVYYYDLRNPK--LPLCTMIGHSKTVSYVRFV-DSSTLV-SSST--DNTLKLWDLSMSISGINETPLHSFMGHTNVK 711 (793)
T ss_pred CCCeEEEEECCCCC--ccceEecCCCCCEEEEEEe-CCCEEE-EEEC--CCEEEEEeCCCCccccCCcceEEEcCCCCCe
Confidence 6999999998751 2566777899999999997 454444 4443 999999999743 566677766 578
Q ss_pred EEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEe-------------eccccceeEEEECCCCCEEEEEeCCCcEEE
Q psy8285 384 TSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEEL-------------KIHQERILSAVLSPDQTCVAAASADETISI 450 (507)
Q Consensus 384 ~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~-------------~~~~~~i~~~~~s~~~~~l~s~~~dg~i~i 450 (507)
..++|+|++++|++ |+.|+.|++|+.....++..+ ..|...|.+++|+|++..|++|+.||.|+|
T Consensus 712 ~~v~~s~~~~~las--gs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i 789 (793)
T PLN00181 712 NFVGLSVSDGYIAT--GSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKI 789 (793)
T ss_pred eEEEEcCCCCEEEE--EeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEE
Confidence 89999999999999 889999999998765444322 234567999999999999999999999999
Q ss_pred Eec
Q psy8285 451 WNC 453 (507)
Q Consensus 451 w~~ 453 (507)
|++
T Consensus 790 ~~~ 792 (793)
T PLN00181 790 LEM 792 (793)
T ss_pred Eec
Confidence 996
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=258.16 Aligned_cols=250 Identities=22% Similarity=0.410 Sum_probs=220.5
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce--eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER--LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHS 282 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~ 282 (507)
+...|.++.|+++|+.++++ +.++.+++|+..+.+ ....+.+|...|.+++| +++++++++.|++|++||+....
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~-~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAA-SSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred ccCceEEEEEcCCCCeEEEc-cCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC
Confidence 47889999999999999888 999999999997777 77777899999999999 79999999999999999996554
Q ss_pred cCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC
Q psy8285 283 DYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ 361 (507)
Q Consensus 283 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~ 361 (507)
...+.+.+|...|++++|+|+++++++|+ |++|++||++++ ++...+.+|...|++++|++++..+++ ++ .|+
T Consensus 237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~---~~~~~l~~hs~~is~~~f~~d~~~l~s-~s--~d~ 310 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG---ECVRKLKGHSDGISGLAFSPDGNLLVS-AS--YDG 310 (456)
T ss_pred eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCC---eEEEeeeccCCceEEEEECCCCCEEEE-cC--CCc
Confidence 57788999999999999999999999999 699999999997 899999999999999999999965555 44 399
Q ss_pred eEEEEeCCCCC--eeeeeecC--C-CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccc---eeEEEEC
Q psy8285 362 TVRLWNSMNGK--EKCHVKTD--S-QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQER---ILSAVLS 433 (507)
Q Consensus 362 ~i~i~d~~~~~--~~~~~~~~--~-~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~---i~~~~~s 433 (507)
.|++||+.++. +...+... . .+++++|+|+++++++ +..|+.+++||+..+..+..+.+|... +.+...+
T Consensus 311 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~--~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 311 TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS--ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEE--ecCCCeEEEEEccCCcceeeecccCCcceeEeccccc
Confidence 99999999999 45555544 2 5899999999999999 889999999999999999999998774 4444557
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCcccceeec
Q psy8285 434 PDQTCVAAASADETISIWNCFPRDKKRKARQV 465 (507)
Q Consensus 434 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 465 (507)
+.+.++++++.|+.|++|++.++.....+...
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 78999999999999999999997777665543
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=219.48 Aligned_cols=260 Identities=21% Similarity=0.353 Sum_probs=219.4
Q ss_pred cCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE--EeecCccEEEEEe---eCCEEEEEecCCeEEEEE
Q psy8285 203 YPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK--LRTHMHQVIAMCW---NGNLLSCGTIGGNILHYD 277 (507)
Q Consensus 203 ~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d 277 (507)
..+ |...+.+++|+.+|.+|+.+ +.|+++.+|++...+.... ..+|...|-.++| +...|++++.|.+|++||
T Consensus 16 ~~~-~~~~v~Sv~wn~~g~~lasg-s~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQG-HVQKVHSVAWNCDGTKLASG-SFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred hhh-hhhcceEEEEcccCceeeec-ccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 344 88899999999999999999 9999999999987755543 4579989999999 578999999999999999
Q ss_pred CCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEc
Q psy8285 278 VRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 278 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
++..+ +........+.+ -+.|+|+|+++++++ |..|.+.|.++. +.....+ ....+..+.|+.++..++++.+
T Consensus 94 ~r~~k-~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~---~~~~~~~-~~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 94 IRSGK-CTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTY---KIVNEEQ-FKFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred eccCc-EEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEeccc---ceeehhc-ccceeeeeeecCCCCEEEEecC
Confidence 99887 444444444444 489999999999999 699999999986 4443333 5567888999977755566554
Q ss_pred cCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCC
Q psy8285 357 GICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPD 435 (507)
Q Consensus 357 ~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~ 435 (507)
.|.|.|.....-+++..++.| ....|+.|+|+|+|+|+ |+.|..+.+||+...-+++.+..+.-+|+.+.||.|
T Consensus 168 ---lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~--GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~d 242 (313)
T KOG1407|consen 168 ---LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFAT--GSADALVSLWDVDELICERCISRLDWPVRTLSFSHD 242 (313)
T ss_pred ---CceEEEEeccccccccccccCCcceEEEEECCCCceEee--ccccceeeccChhHhhhheeeccccCceEEEEeccC
Confidence 899999999999999999888 68999999999999999 999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCCcccceeecCCCcceEEee
Q psy8285 436 QTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAI 475 (507)
Q Consensus 436 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 475 (507)
|++||++|.|..|-|=+++++....+++..++...++|.|
T Consensus 243 g~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHP 282 (313)
T KOG1407|consen 243 GRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHP 282 (313)
T ss_pred cceeeccCccceEEeEecccCCeEEEeeccCCceeEEecC
Confidence 9999999999999999999999998866555544444433
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-32 Score=217.18 Aligned_cols=262 Identities=21% Similarity=0.356 Sum_probs=217.5
Q ss_pred cCCeEEEEECCCCc-eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC-ceeEEEEeecCccEEEEEe-
Q psy8285 183 LDTSVYTWNTKTNK-TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE-ERLIQKLRTHMHQVIAMCW- 259 (507)
Q Consensus 183 ~~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~- 259 (507)
..|.+.|.++..++ ......+. ..+.+..++|+++....+.+++.||++++||+.. ..++..++.|..+|.++.|
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d--~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn 113 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYD--TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWN 113 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeee--cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccc
Confidence 57899999996433 33333333 5788999999998765554448999999999653 3578888999999999999
Q ss_pred --eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC-CCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCC
Q psy8285 260 --NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP-NGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCH 335 (507)
Q Consensus 260 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~ 335 (507)
+...+++++.|++|++|+...+. ...++.+|...|+..+|+| ..+++++++ |+.+++||++.. -....++.|
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~-Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~---gk~~~i~ah 189 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPN-SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP---GKFMSIEAH 189 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCc-ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC---CceeEEEec
Confidence 57788889999999999998776 5677999999999999999 567888888 799999999986 333448889
Q ss_pred CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC-eeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 336 LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 336 ~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
...+.++.|+.-..+++++++. |+.|+.||+++-+ ++..+.++ -.|..+.|||...-++++ ++.|-+++|||...
T Consensus 190 ~~Eil~cdw~ky~~~vl~Tg~v--d~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaS-asYDmT~riw~~~~ 266 (311)
T KOG0277|consen 190 NSEILCCDWSKYNHNVLATGGV--DNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLAS-ASYDMTVRIWDPER 266 (311)
T ss_pred cceeEeecccccCCcEEEecCC--CceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhh-ccccceEEeccccc
Confidence 9999999999999999999986 9999999998764 56677666 479999999987666554 78999999999874
Q ss_pred c-cEEEEeeccccceeEEEECC-CCCEEEEEeCCCcEEEEec
Q psy8285 414 L-HLIEELKIHQERILSAVLSP-DQTCVAAASADETISIWNC 453 (507)
Q Consensus 414 ~-~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~dg~i~iw~~ 453 (507)
. ..+.+...|..-+..+.||+ ++.++|+++.|+.++||+.
T Consensus 267 ~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 267 QDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred chhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 4 45556677899999999998 6779999999999999984
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-30 Score=214.15 Aligned_cols=276 Identities=12% Similarity=0.233 Sum_probs=228.6
Q ss_pred cceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCC--CCcEEEEeCCCc
Q psy8285 166 FYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTC--TEYIDLWHEQEE 241 (507)
Q Consensus 166 ~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--dg~i~iwd~~~~ 241 (507)
-.|++++|+++| +++++.|..++|||..+++..+.... +.-.+..++|......++.+ +. |.+|+..++.+.
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s---kkyG~~~~~Fth~~~~~i~s-Stk~d~tIryLsl~dN 90 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS---KKYGVDLACFTHHSNTVIHS-STKEDDTIRYLSLHDN 90 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec---ccccccEEEEecCCceEEEc-cCCCCCceEEEEeecC
Confidence 458899999998 66667888999999999998887776 55678888998777777666 55 889999999999
Q ss_pred eeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC-CcEEEE
Q psy8285 242 RLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIW 318 (507)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~ 318 (507)
+.++.+.+|...|..++. -++.+++++.|++|++||++..+ +...+.....++ ++|.|+|-++|++.+ ..|++|
T Consensus 91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLy 167 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-CQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLY 167 (311)
T ss_pred ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-CceEEecCCCcc--eeECCCCcEEEEecCCCeEEEE
Confidence 999999999999999998 46899999999999999999765 444454444444 789999999999996 699999
Q ss_pred EcCCCCCCCCeeeec---CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC----CeEEEEECCC
Q psy8285 319 DFRQLDAKRPQVNNQ---CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS----QVTSILWSEQ 391 (507)
Q Consensus 319 d~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~----~i~~~~~s~~ 391 (507)
|++..+. .+..++. +.....+.+.|+|+|+.++++.. .+.+++.|.-+|..+..+..+. -....+|+||
T Consensus 168 D~Rs~dk-gPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~---~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd 243 (311)
T KOG1446|consen 168 DLRSFDK-GPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN---ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD 243 (311)
T ss_pred EecccCC-CCceeEccCCCCccceeeeEEcCCCCEEEEEeC---CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence 9997532 3333333 34667899999999999998876 8999999999999888887652 2368899999
Q ss_pred CCeEEEEeccCCCeEEEEeCCCccEEEEeec-cccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 392 YRELVTSHGKQDCSLKMWEYPRLHLIEELKI-HQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 392 ~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
++++++ |+.||.|++|+++++..+..+.+ +.+++.++.|+|.-..+++++ ..+.+|=....
T Consensus 244 s~Fvl~--gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~~ 305 (311)
T KOG1446|consen 244 SKFVLS--GSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDED 305 (311)
T ss_pred CcEEEE--ecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEEecccc
Confidence 999999 89999999999999999999998 688999999999876666654 57888876543
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-31 Score=223.36 Aligned_cols=277 Identities=20% Similarity=0.359 Sum_probs=226.2
Q ss_pred cccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCC---eEEEEeCCCCcEEEEeCCC
Q psy8285 164 NDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTT---DLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 164 ~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~~dg~i~iwd~~~ 240 (507)
++-+|.++.-.+..+++++.||.+++|+.. |+...+. .| |.++|.+++|.-... .++++ +.|.++++|..+.
T Consensus 104 hdDWVSsv~~~~~~IltgsYDg~~riWd~~-Gk~~~~~--~G-ht~~ik~v~~v~~n~~~~~fvsa-s~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 104 HDDWVSSVKGASKWILTGSYDGTSRIWDLK-GKSIKTI--VG-HTGPIKSVAWVIKNSSSCLFVSA-SMDQTLRLWKWNV 178 (423)
T ss_pred chhhhhhhcccCceEEEeecCCeeEEEecC-CceEEEE--ec-CCcceeeeEEEecCCccceEEEe-cCCceEEEEEecC
Confidence 344677777776679999999999999985 5544443 44 999999998865444 48888 9999999999887
Q ss_pred cee----EEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCC------------------------cCceeeec
Q psy8285 241 ERL----IQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHS------------------------DYPTAITR 290 (507)
Q Consensus 241 ~~~----~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~------------------------~~~~~~~~ 290 (507)
++. +....+|...|-+++. ++..+++|+.|.+|.+|+..+.. .+...+.+
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 653 3344589999999998 79999999999999999932210 24556789
Q ss_pred CCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC
Q psy8285 291 EGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM 369 (507)
Q Consensus 291 ~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~ 369 (507)
|..+|.++.|++ ...+++++ |.+|+.||+..+ ....++. ......++..+|.. .++++++. |..+++||.+
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg---~~~~~~~-~~ksl~~i~~~~~~-~Ll~~gss--dr~irl~DPR 330 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETG---GLKSTLT-TNKSLNCISYSPLS-KLLASGSS--DRHIRLWDPR 330 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecc---cceeeee-cCcceeEeeccccc-ceeeecCC--CCceeecCCC
Confidence 999999999998 66788888 899999999998 5655555 56689999999976 67777665 9999999998
Q ss_pred CCC---eeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc-EEEEeeccccceeEEEECCCCCEEEEEeC
Q psy8285 370 NGK---EKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH-LIEELKIHQERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 370 ~~~---~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 444 (507)
++. ....+.+| +.|.++.|+|...++++. |+.|+++++||+++.+ ++..+.+|...|.++.|+ ++..+++|+.
T Consensus 331 ~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S-~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGa 408 (423)
T KOG0313|consen 331 TGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVS-GSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGA 408 (423)
T ss_pred CCCCceeEEeeecchhhhhheecCCCCceEEEE-EecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccC
Confidence 874 33455555 789999999999988877 8999999999999877 999999999999999997 4568999999
Q ss_pred CCcEEEEecCC
Q psy8285 445 DETISIWNCFP 455 (507)
Q Consensus 445 dg~i~iw~~~~ 455 (507)
|++|+|+.-.+
T Consensus 409 D~~l~i~~~~~ 419 (423)
T KOG0313|consen 409 DNKLRIFKGSP 419 (423)
T ss_pred cceEEEecccc
Confidence 99999997543
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-32 Score=224.63 Aligned_cols=290 Identities=14% Similarity=0.234 Sum_probs=248.3
Q ss_pred chhhhcCCCcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCC-----CCCCceEEEEEccCCCeEEE
Q psy8285 153 PERILEAPSIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPT-----YDNAYISCVAWKPRTTDLAV 225 (507)
Q Consensus 153 ~~~~~~~~~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~ 225 (507)
|......-.+....++.|..||||+ +++++.||-|.+|+..+|+..+-..... -+..+|.|+.|+.|...|++
T Consensus 201 Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAs 280 (508)
T KOG0275|consen 201 PTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLAS 280 (508)
T ss_pred hHHhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhc
Confidence 3333344445556678899999998 6677899999999999988654333221 06789999999999999999
Q ss_pred EeCCCCcEEEEeCCCceeEEEEe-ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC
Q psy8285 226 TNTCTEYIDLWHEQEERLIQKLR-THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP 302 (507)
Q Consensus 226 ~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 302 (507)
+ +.||.|++|.+.+|.+++.+. .|...|++++| |+..+++++.|.++++.-+.+++ ..+.+.+|...|+...|.+
T Consensus 281 G-sqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK-~LKEfrGHsSyvn~a~ft~ 358 (508)
T KOG0275|consen 281 G-SQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK-CLKEFRGHSSYVNEATFTD 358 (508)
T ss_pred c-CcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch-hHHHhcCccccccceEEcC
Confidence 9 999999999999999999987 79999999999 78899999999999999999987 7888999999999999999
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecC--CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec
Q psy8285 303 NGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQC--HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT 379 (507)
Q Consensus 303 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 379 (507)
||..+++++ ||+|++|+..+. .++.++.. ...+|..+..-|.++.-++++.. ..++.+.++ .|+.++.+..
T Consensus 359 dG~~iisaSsDgtvkvW~~Ktt---eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr--sntv~imn~-qGQvVrsfsS 432 (508)
T KOG0275|consen 359 DGHHIISASSDGTVKVWHGKTT---ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR--SNTVYIMNM-QGQVVRSFSS 432 (508)
T ss_pred CCCeEEEecCCccEEEecCcch---hhhhhccCCCCcccceeEEEcCCCCceEEEEcC--CCeEEEEec-cceEEeeecc
Confidence 999999998 799999999988 66666543 45578888888877666666654 889999997 5777777754
Q ss_pred C----CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 380 D----SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 380 ~----~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
. +...+++.+|.|.++.+ .++|+.++.|.+.+|+....+..|...+..++-+|..+.|++-+.||.+++|.
T Consensus 433 GkREgGdFi~~~lSpkGewiYc--igED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 433 GKREGGDFINAILSPKGEWIYC--IGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CCccCCceEEEEecCCCcEEEE--EccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 3 56888899999999999 67999999999999999999999999999999999999999999999999996
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=228.52 Aligned_cols=279 Identities=19% Similarity=0.284 Sum_probs=235.3
Q ss_pred cceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 166 FYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 166 ~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
..|.+++|||.. -++++..-.+.||+..+....+.+.- -...+.++.|..||++|++| ...|.|+|||+.+...
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~sr---Fk~~v~s~~fR~DG~LlaaG-D~sG~V~vfD~k~r~i 102 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSR---FKDVVYSVDFRSDGRLLAAG-DESGHVKVFDMKSRVI 102 (487)
T ss_pred CcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHh---hccceeEEEeecCCeEEEcc-CCcCcEEEeccccHHH
Confidence 358889999954 56666778899999988776553332 56789999999999999998 9999999999887777
Q ss_pred EEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC-EEEEEe-CCcEEEE
Q psy8285 244 IQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR-YLASGS-NNTVKIW 318 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~ 318 (507)
++.+..|+.++..+.| ++..|++|+.|+.+++||+.+.. ....+.+|.+.|+|.+|+|... ++++|+ ||.|++|
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 8889999999999998 78899999999999999999877 3567889999999999999654 778888 8999999
Q ss_pred EcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC-Ceeeeee-cCCCeEEEEECCCCCeEE
Q psy8285 319 DFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG-KEKCHVK-TDSQVTSILWSEQYRELV 396 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~-~~~~i~~~~~s~~~~~l~ 396 (507)
|++... ..+..+ .|..+|..+.+-|.| .++++++ ...+++||+.+| +.+..+. ++..|+|+.+..++..|+
T Consensus 182 DtR~~~--~~v~el-nhg~pVe~vl~lpsg-s~iasAg---Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 182 DTRSLT--SRVVEL-NHGCPVESVLALPSG-SLIASAG---GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred EeccCC--ceeEEe-cCCCceeeEEEcCCC-CEEEEcC---CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEe
Confidence 999862 344444 499999999999987 5677776 689999999855 4445444 557899999999999999
Q ss_pred EEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 397 TSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 397 ~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
+ |+-|+.+++||+.+.+.+..+. ..++|.+++.+|+++.++.|..||.+.+=+....+..
T Consensus 255 S--~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~ 314 (487)
T KOG0310|consen 255 S--GSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKP 314 (487)
T ss_pred e--cccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcccCC
Confidence 9 8999999999999999998887 5789999999999999999999999888755444433
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-30 Score=241.65 Aligned_cols=315 Identities=15% Similarity=0.264 Sum_probs=254.2
Q ss_pred cccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeecC
Q psy8285 3 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDRS 81 (507)
Q Consensus 3 ~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 81 (507)
+--+.+|..|+|+|.-+++|++- ..|.|++||..-|.++..|. |.++|..+.|.|...
T Consensus 6 EskSsRvKglsFHP~rPwILtsl---HsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qp------------------ 64 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSL---HSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQP------------------ 64 (1202)
T ss_pred hcccccccceecCCCCCEEEEee---cCceeeeehhhhhhHHhhhhccCCccceeeecCCCC------------------
Confidence 34578899999999999855554 59999999999999999887 777777777653221
Q ss_pred CccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCCC
Q psy8285 82 SYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPS 161 (507)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (507)
T Consensus 65 -------------------------------------------------------------------------------- 64 (1202)
T KOG0292|consen 65 -------------------------------------------------------------------------------- 64 (1202)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc
Q psy8285 162 IINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE 241 (507)
Q Consensus 162 ~~~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~ 241 (507)
-++++|.|-.|++|+.++.+ .++++.| |.+.|..+.|++.-+.++++ +.|.+|+||+.+++
T Consensus 65 ---------------lFVSGGDDykIkVWnYk~rr--clftL~G-HlDYVRt~~FHheyPWIlSA-SDDQTIrIWNwqsr 125 (1202)
T KOG0292|consen 65 ---------------LFVSGGDDYKIKVWNYKTRR--CLFTLLG-HLDYVRTVFFHHEYPWILSA-SDDQTIRIWNWQSR 125 (1202)
T ss_pred ---------------eEEecCCccEEEEEecccce--ehhhhcc-ccceeEEeeccCCCceEEEc-cCCCeEEEEeccCC
Confidence 16777899999999987665 4567777 99999999999999999999 99999999999999
Q ss_pred eeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCC----------------------------cCceeeecC
Q psy8285 242 RLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHS----------------------------DYPTAITRE 291 (507)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~----------------------------~~~~~~~~~ 291 (507)
+++..+.+|..-|.|..| ..+.+++++-|.+|++||+..-+ .....+.+|
T Consensus 126 ~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH 205 (1202)
T KOG0292|consen 126 KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH 205 (1202)
T ss_pred ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence 999999999999999999 47899999999999999986421 012356789
Q ss_pred CCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC
Q psy8285 292 GDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN 370 (507)
Q Consensus 292 ~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 370 (507)
...|+-++|+|.-.++++|+| ..|++|.+...+ ...+.+..+|.+.|.++-|+|... ++.+.++ |++|++||+..
T Consensus 206 DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-aWEvDtcrgH~nnVssvlfhp~q~-lIlSnsE--DksirVwDm~k 281 (1202)
T KOG0292|consen 206 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-AWEVDTCRGHYNNVSSVLFHPHQD-LILSNSE--DKSIRVWDMTK 281 (1202)
T ss_pred ccccceEEecCCcceEEecCCcceeeEEEecccc-ceeehhhhcccCCcceEEecCccc-eeEecCC--CccEEEEeccc
Confidence 999999999999999999995 999999998642 245667889999999999999874 5555544 99999999999
Q ss_pred CCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEE
Q psy8285 371 GKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETIS 449 (507)
Q Consensus 371 ~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~ 449 (507)
.+.++++... ...+.++-+|..+.+++ | .|+-+.||.+....+...+ + ++.|.-.- |..|+
T Consensus 282 Rt~v~tfrrendRFW~laahP~lNLfAA--g-HDsGm~VFkleRErpa~~v------------~--~n~LfYvk-d~~i~ 343 (1202)
T KOG0292|consen 282 RTSVQTFRRENDRFWILAAHPELNLFAA--G-HDSGMIVFKLERERPAYAV------------N--GNGLFYVK-DRFIR 343 (1202)
T ss_pred ccceeeeeccCCeEEEEEecCCcceeee--e-cCCceEEEEEcccCceEEE------------c--CCEEEEEc-cceEE
Confidence 9999999765 78999999999999998 4 4666778877543332222 1 22233333 67788
Q ss_pred EEecCCCCcc
Q psy8285 450 IWNCFPRDKK 459 (507)
Q Consensus 450 iw~~~~~~~~ 459 (507)
.+|+.+.+..
T Consensus 344 ~~d~~t~~d~ 353 (1202)
T KOG0292|consen 344 SYDLRTQKDT 353 (1202)
T ss_pred eeeccccccc
Confidence 8888775443
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-32 Score=230.88 Aligned_cols=272 Identities=17% Similarity=0.269 Sum_probs=229.7
Q ss_pred cceeeeeeCCC-C-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 166 FYTSGLDWGYH-D-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 166 ~~i~~~~~s~~-~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
..++.+.|-++ . +.+++.|..|++|+....+......+.| ..++|+.+.|.+++..++++ +.|+.+++|++...+.
T Consensus 176 gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaG-s~g~it~~d~d~~~~~~iAa-s~d~~~r~Wnvd~~r~ 253 (459)
T KOG0288|consen 176 GEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAG-SLGNITSIDFDSDNKHVIAA-SNDKNLRLWNVDSLRL 253 (459)
T ss_pred cccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhc-cCCCcceeeecCCCceEEee-cCCCceeeeeccchhh
Confidence 34677888887 3 7778899999999998877666666777 78899999999999999999 9999999999999999
Q ss_pred EEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEc
Q psy8285 244 IQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDF 320 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~ 320 (507)
..++.+|...|+++.| ....+++|+.|.+|++||+.........+. ...+..+..+ ...+++|. |++|++||.
T Consensus 254 ~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~--~S~cnDI~~~--~~~~~SgH~DkkvRfwD~ 329 (459)
T KOG0288|consen 254 RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP--GSQCNDIVCS--ISDVISGHFDKKVRFWDI 329 (459)
T ss_pred hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc--cccccceEec--ceeeeecccccceEEEec
Confidence 9999999999999999 344499999999999999998653222332 2334445544 44677777 799999999
Q ss_pred CCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-----CCeEEEEECCCCCeE
Q psy8285 321 RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-----SQVTSILWSEQYREL 395 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l 395 (507)
+.. .+......+ +.|+++..++++..+++++. |.++.+.|+++.+....+... ...+.+.|||++.|+
T Consensus 330 Rs~---~~~~sv~~g-g~vtSl~ls~~g~~lLsssR---Ddtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yv 402 (459)
T KOG0288|consen 330 RSA---DKTRSVPLG-GRVTSLDLSMDGLELLSSSR---DDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYV 402 (459)
T ss_pred cCC---ceeeEeecC-cceeeEeeccCCeEEeeecC---CCceeeeecccccEEEEeeccccccccccceeEECCCCcee
Confidence 987 677776655 49999999999988888865 999999999999988877653 468899999999999
Q ss_pred EEEeccCCCeEEEEeCCCccEEEEeeccccc--eeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 396 VTSHGKQDCSLKMWEYPRLHLIEELKIHQER--ILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~--i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
++ |+.||.|+||++.++++...+...... |++++|+|.|..|++++.++.+.+|.
T Consensus 403 aA--GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 403 AA--GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ee--ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99 999999999999999998888765544 99999999999999999999999993
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-28 Score=212.97 Aligned_cols=393 Identities=17% Similarity=0.202 Sum_probs=281.5
Q ss_pred CCcccccceeeeeeccCcceeeeccccc------cccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCC
Q psy8285 1 NNQCHLSAVKAIAWCPWEPTLLATGGGI------CDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNT 73 (507)
Q Consensus 1 ~l~gH~~~V~~l~fsp~g~~llasg~~~------~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~ 73 (507)
|..||+..|.||+.+||.- ++++|.++ ....|||||..+-.-+..+. ...+|++++||+......
T Consensus 99 ~y~GH~ddikc~~vHPdri-~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~------- 170 (626)
T KOG2106|consen 99 HYLGHNDDIKCMAVHPDRI-RVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSL------- 170 (626)
T ss_pred cccCCCCceEEEeecCCce-eeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCce-------
Confidence 4579999999999999844 58887621 12369999998888888777 588999999996554211
Q ss_pred ceeEeecCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCc
Q psy8285 74 DRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKP 153 (507)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (507)
...+..+.+--+ .+|.+..+..
T Consensus 171 --l~~vD~s~~h~l------------------------------------SVWdWqk~~~-------------------- 192 (626)
T KOG2106|consen 171 --LCAVDDSNPHML------------------------------------SVWDWQKKAK-------------------- 192 (626)
T ss_pred --EEEecCCCcccc------------------------------------chhhchhhhc--------------------
Confidence 111111111111 2333322110
Q ss_pred hhhhcCCCcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEe-cCCCCCCceEEEEEccCCCeEEEEeCCC
Q psy8285 154 ERILEAPSIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVE-YPTYDNAYISCVAWKPRTTDLAVTNTCT 230 (507)
Q Consensus 154 ~~~~~~~~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~d 230 (507)
..+.-..+.-+-...|+|.. ++.....+.+++|+.+.+...+... +++.....|.|++|.++|+ ++++ ..+
T Consensus 193 ----~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTg-DS~ 266 (626)
T KOG2106|consen 193 ----LGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITG-DSG 266 (626)
T ss_pred ----cCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEee-cCC
Confidence 00000011224457788853 7777788999999999887654332 3332457899999999884 5677 999
Q ss_pred CcEEEEeCCCceeEEEEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEE
Q psy8285 231 EYIDLWHEQEERLIQKLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 309 (507)
|.|.||+..+.+..+....|.+.|.+++. ....|++|+.|..|..||-.-.+.....+....+.|+.++=...+ |+.
T Consensus 267 G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~d--i~v 344 (626)
T KOG2106|consen 267 GNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGD--ILV 344 (626)
T ss_pred ceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCc--EEE
Confidence 99999999888888777799999999999 334455699999999999443332334455566778776644322 666
Q ss_pred Ee-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEE
Q psy8285 310 GS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILW 388 (507)
Q Consensus 310 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~ 388 (507)
|. .+.|.-=.++.+ -.....+|......++.+|+.+.++.++. |+.+++|+ ..+++.......+..++.|
T Consensus 345 GTtrN~iL~Gt~~~~----f~~~v~gh~delwgla~hps~~q~~T~gq---dk~v~lW~--~~k~~wt~~~~d~~~~~~f 415 (626)
T KOG2106|consen 345 GTTRNFILQGTLENG----FTLTVQGHGDELWGLATHPSKNQLLTCGQ---DKHVRLWN--DHKLEWTKIIEDPAECADF 415 (626)
T ss_pred eeccceEEEeeecCC----ceEEEEecccceeeEEcCCChhheeeccC---cceEEEcc--CCceeEEEEecCceeEeec
Confidence 66 477766666654 33344568899999999999877776665 99999999 6777777777889999999
Q ss_pred CCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccccee---ec
Q psy8285 389 SEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR---QV 465 (507)
Q Consensus 389 s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~---~~ 465 (507)
+|.| .+++ |...|...+.|..+...+..-.. ..+++.++|+|+|.+||.|+.|+.|+||.+.......... ..
T Consensus 416 hpsg-~va~--Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 416 HPSG-VVAV--GTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred cCcc-eEEE--eeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence 9999 8888 88999999999999666655554 8899999999999999999999999999998765544322 12
Q ss_pred CCCcceEEeeccCcc
Q psy8285 466 GSGSSLEFAILKQPV 480 (507)
Q Consensus 466 ~~~~~~~~~~~~~~~ 480 (507)
.+...++|++++..+
T Consensus 492 s~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 492 SPITHLDWSSDSQFL 506 (626)
T ss_pred ceeEEeeecCCCceE
Confidence 456677888877653
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.5e-30 Score=237.50 Aligned_cols=383 Identities=16% Similarity=0.217 Sum_probs=289.8
Q ss_pred eeeeeeccCccee--eeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeecCCccc
Q psy8285 9 VKAIAWCPWEPTL--LATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDRSSYDS 85 (507)
Q Consensus 9 V~~l~fsp~g~~l--lasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (507)
|++|. +|+ .|| ++.|+ .+|.+.|||+.+++.+++++ ..+.|+++.-+|.-...... ..++
T Consensus 162 Ital~-HP~-TYLNKIvvGs--~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG-------------~~~G 224 (910)
T KOG1539|consen 162 ITALL-HPS-TYLNKIVVGS--SQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIG-------------LENG 224 (910)
T ss_pred eeeEe-cch-hheeeEEEee--cCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEe-------------ccCc
Confidence 66664 674 554 66777 79999999999999999999 57899998876654432222 1222
Q ss_pred cccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCCCcccc
Q psy8285 86 LCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSIIND 165 (507)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (507)
.+..+++..+ ..+..|.. +.
T Consensus 225 ~ViifNlK~d---------------------------kil~sFk~---------------------------------d~ 244 (910)
T KOG1539|consen 225 TVIIFNLKFD---------------------------KILMSFKQ---------------------------------DW 244 (910)
T ss_pred eEEEEEcccC---------------------------cEEEEEEc---------------------------------cc
Confidence 2222222221 01222221 12
Q ss_pred cceeeeeeCCCC--EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC--
Q psy8285 166 FYTSGLDWGYHD--TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE-- 240 (507)
Q Consensus 166 ~~i~~~~~s~~~--~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~-- 240 (507)
-.|+.++|..|| +++.+ ..|.+.+||++..+........ |.+.|....|.|....++++ +.|..+++|=..+
T Consensus 245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~na--h~~sv~~~~fl~~epVl~ta-~~DnSlk~~vfD~~d 321 (910)
T KOG1539|consen 245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNA--HYGSVTGATFLPGEPVLVTA-GADNSLKVWVFDSGD 321 (910)
T ss_pred cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecc--ccCCcccceecCCCceEeec-cCCCceeEEEeeCCC
Confidence 347789999887 55555 6699999999887766555433 88899999999999999998 8999988885543
Q ss_pred c--eeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEEC-------------------------------------
Q psy8285 241 E--RLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDV------------------------------------- 278 (507)
Q Consensus 241 ~--~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~------------------------------------- 278 (507)
| +.++.-.+|..+..++.| ++..+.+++.|++++.+++
T Consensus 322 g~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~f 401 (910)
T KOG1539|consen 322 GVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEF 401 (910)
T ss_pred CcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceee
Confidence 3 345555678888888888 5777777777776555443
Q ss_pred ----------------------------CCCCcCcee-----eecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC
Q psy8285 279 ----------------------------RTHSDYPTA-----ITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLD 324 (507)
Q Consensus 279 ----------------------------~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~ 324 (507)
+....-... +......+++++.++-|++.+.|. .|.|-+|+++++
T Consensus 402 a~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG- 480 (910)
T KOG1539|consen 402 AFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG- 480 (910)
T ss_pred ecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC-
Confidence 221100001 111235678899999999999988 499999999998
Q ss_pred CCCCeeee---cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEecc
Q psy8285 325 AKRPQVNN---QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGK 401 (507)
Q Consensus 325 ~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~ 401 (507)
.....+ ..|.++|+.++...-++.+++++. +|.+.+||..+...+..+.....+..+..+.....+++ +.
T Consensus 481 --i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~---~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~--~~ 553 (910)
T KOG1539|consen 481 --IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGA---DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAI--AL 553 (910)
T ss_pred --eeecccccCccccCceeEEEecCCCceEEEccC---cceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhh--hc
Confidence 444444 579999999999877754555554 99999999999998889988889999999999888888 77
Q ss_pred CCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecCCCcceEEeeccCc
Q psy8285 402 QDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAILKQP 479 (507)
Q Consensus 402 ~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (507)
+|-.|+++|..+.+.++.+.+|.+.|+++.|||||++|++++.|++|++||+.++..+..+....+..++.++|....
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDF 631 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCE
Confidence 899999999999999999999999999999999999999999999999999999999988888777888887776544
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-30 Score=219.70 Aligned_cols=226 Identities=20% Similarity=0.385 Sum_probs=193.5
Q ss_pred EEEEEcCCeEEEEECCCCceeE--EEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC---------------
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQL--LVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE--------------- 240 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~--------------- 240 (507)
+++++.|.++++|..+.++... .....| |...|.++...++|..++++ +.|..|.||+..+
T Consensus 162 fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~G-Hk~~V~sVsv~~sgtr~~Sg-S~D~~lkiWs~~~~~~~~~E~~s~~rrk 239 (423)
T KOG0313|consen 162 FVSASMDQTLRLWKWNVGENKVKALKVCRG-HKRSVDSVSVDSSGTRFCSG-SWDTMLKIWSVETDEEDELESSSNRRRK 239 (423)
T ss_pred EEEecCCceEEEEEecCchhhhhHHhHhcc-cccceeEEEecCCCCeEEee-cccceeeecccCCCccccccccchhhhh
Confidence 7888999999999988766432 223346 99999999999999999999 9999999999321
Q ss_pred ----------ceeEEEEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEE
Q psy8285 241 ----------ERLIQKLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 241 ----------~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 309 (507)
+.++..+.+|..+|.++.| +...+++++.|.+|+.||+.++.. ...+. ....+.|+.++|..++|++
T Consensus 240 ~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~-~~~~~-~~ksl~~i~~~~~~~Ll~~ 317 (423)
T KOG0313|consen 240 KQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGL-KSTLT-TNKSLNCISYSPLSKLLAS 317 (423)
T ss_pred hhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccc-eeeee-cCcceeEeecccccceeee
Confidence 2345678899999999999 788999999999999999999873 33333 4567899999999999999
Q ss_pred Ee-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC-eeeeeecC-CCeEEE
Q psy8285 310 GS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKTD-SQVTSI 386 (507)
Q Consensus 310 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~-~~i~~~ 386 (507)
|+ |..+++||.+++.......++.+|.+.|.++.|+|...+++++++ +|+++++||+++.+ ++..+..+ ..|.++
T Consensus 318 gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S--~D~t~klWDvRS~k~plydI~~h~DKvl~v 395 (423)
T KOG0313|consen 318 GSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS--YDNTVKLWDVRSTKAPLYDIAGHNDKVLSV 395 (423)
T ss_pred cCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe--cCCeEEEEEeccCCCcceeeccCCceEEEE
Confidence 99 799999999998777788899999999999999999999999987 49999999999988 88888877 689999
Q ss_pred EECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 387 LWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 387 ~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
.|.. +.++++ |+.|++|+|+...
T Consensus 396 dW~~-~~~IvS--GGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 396 DWNE-GGLIVS--GGADNKLRIFKGS 418 (423)
T ss_pred eccC-CceEEe--ccCcceEEEeccc
Confidence 9984 567888 8999999998754
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.8e-30 Score=242.35 Aligned_cols=280 Identities=17% Similarity=0.207 Sum_probs=243.1
Q ss_pred ccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 165 DFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 165 ~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
+..+.+..|..+.+++++.++.|.+|+..++.... ..+.| |.+.|.++++...+..|+++ +.|.++++||..++++.
T Consensus 208 ~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~-~~l~G-H~g~V~~l~~~~~~~~lvsg-S~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 208 DHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLIL-TRLVG-HFGGVWGLAFPSGGDKLVSG-STDKTERVWDCSTGECT 284 (537)
T ss_pred cchhhhheeecCeEEecCCCceeEEeecccceEEE-eeccC-CCCCceeEEEecCCCEEEEE-ecCCcEEeEecCCCcEE
Confidence 44467788886668888999999999998877543 33666 99999999998877888888 99999999999999999
Q ss_pred EEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q psy8285 245 QKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQL 323 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~ 323 (507)
..+.+|...+.++...+..+++|+.|.+|++|++.++. ....+.+|..+|+++..+ +.++++|+ |+.|++||+.++
T Consensus 285 ~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~ 361 (537)
T KOG0274|consen 285 HSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTG 361 (537)
T ss_pred EEecCCCceEEEEEccCceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhc
Confidence 99999999999999999999999999999999999876 566777799999999998 77888888 799999999988
Q ss_pred CCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC-CeeeeeecCCCeEEEEECCCCCeEEEEeccC
Q psy8285 324 DAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG-KEKCHVKTDSQVTSILWSEQYRELVTSHGKQ 402 (507)
Q Consensus 324 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~ 402 (507)
+++..+.+|..+|+++.+.+. ..+.+++ +|++|++||+++. +++..+.++..+. -.....+++|+. ++.
T Consensus 362 ---~cl~sl~gH~~~V~sl~~~~~--~~~~Sgs--~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs--~~a 431 (537)
T KOG0274|consen 362 ---KCLKSLSGHTGRVYSLIVDSE--NRLLSGS--LDTTIKVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVS--SSA 431 (537)
T ss_pred ---eeeeeecCCcceEEEEEecCc--ceEEeee--eccceEeecCCchhhhhhhhcCCcccc-cccccccceeEe--ccc
Confidence 999999999999999988764 3455554 5999999999999 9999999885443 333446788888 889
Q ss_pred CCeEEEEeCCCccEEEEeec-cccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccce
Q psy8285 403 DCSLKMWEYPRLHLIEELKI-HQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKA 462 (507)
Q Consensus 403 d~~i~v~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 462 (507)
|+.|++||..+++++..+.+ |...|..+++. ...+++++.||.+++||+.+++..+..
T Consensus 432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 432 DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 99999999999999999998 67889988886 467889999999999999999888765
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-29 Score=202.62 Aligned_cols=266 Identities=17% Similarity=0.270 Sum_probs=226.4
Q ss_pred ceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCC-eEEEEeCCCCcEEEEeCCCcee
Q psy8285 167 YTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTT-DLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
.+.+++|+.+| +..++.|+.+.+|++.......-....+ |.+.|-.++|+|... .++++ +.|.+|++||++.+++
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~g-h~~svdql~w~~~~~d~~ata-s~dk~ir~wd~r~~k~ 99 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRG-HTDSVDQLCWDPKHPDLFATA-SGDKTIRIWDIRSGKC 99 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccC-CCcchhhheeCCCCCcceEEe-cCCceEEEEEeccCcE
Confidence 36789999998 6667799999999999887666666777 999999999998764 55555 9999999999999999
Q ss_pred EEEEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcC
Q psy8285 244 IQKLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR 321 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~ 321 (507)
...+....+.+.-.-+ +|.++++++.|..|...|.++.+ ..........+..++|+.++.+++..+ .|+|.|....
T Consensus 100 ~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~--~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp 177 (313)
T KOG1407|consen 100 TARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYK--IVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP 177 (313)
T ss_pred EEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccc--eeehhcccceeeeeeecCCCCEEEEecCCceEEEEecc
Confidence 9988876666654444 89999999999999999999865 333334556778899998777766655 5999999988
Q ss_pred CCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEec
Q psy8285 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHG 400 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g 400 (507)
.. +++..+..|.....|+.|+|+|+ .+++|+. |..+.+||+...-+++.+... -+|..++|+.+|++||+ +
T Consensus 178 sL---kpv~si~AH~snCicI~f~p~Gr-yfA~GsA--DAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lAS--a 249 (313)
T KOG1407|consen 178 SL---KPVQSIKAHPSNCICIEFDPDGR-YFATGSA--DALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLAS--A 249 (313)
T ss_pred cc---ccccccccCCcceEEEEECCCCc-eEeeccc--cceeeccChhHhhhheeeccccCceEEEEeccCcceeec--c
Confidence 76 89999999999999999999995 5566655 999999999998888888766 68999999999999999 8
Q ss_pred cCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCC
Q psy8285 401 KQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASAD 445 (507)
Q Consensus 401 ~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d 445 (507)
++|..|-|=++++|..+.+++ +.++...++|+|...+||-+.+|
T Consensus 250 SEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 250 SEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred CccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 999999999999999999998 78899999999999999887765
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=205.43 Aligned_cols=284 Identities=20% Similarity=0.292 Sum_probs=233.5
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|+||..+++.|.+..+|. ||.|++ .|.++-+|-..+|+.+.+.. |.+.|-++.
T Consensus 6 l~GHERplTqiKyN~eGD-LlFsca--KD~~~~vw~s~nGerlGty~GHtGavW~~D----------------------- 59 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGD-LLFSCA--KDSTPTVWYSLNGERLGTYDGHTGAVWCCD----------------------- 59 (327)
T ss_pred cccCccccceEEecCCCc-EEEEec--CCCCceEEEecCCceeeeecCCCceEEEEE-----------------------
Confidence 789999999999999999 588988 89999999999999888776 544433322
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 60 -------------------------------------------------------------------------------- 59 (327)
T KOG0643|consen 60 -------------------------------------------------------------------------------- 59 (327)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEe----CCCCcEEEE
Q psy8285 161 SIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTN----TCTEYIDLW 236 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~dg~i~iw 236 (507)
++|....+++++.|.++++||.++|+...... ...+|..+.|+++|.+++++. +..+.|.++
T Consensus 60 ----------id~~s~~liTGSAD~t~kLWDv~tGk~la~~k----~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~f 125 (327)
T KOG0643|consen 60 ----------IDWDSKHLITGSADQTAKLWDVETGKQLATWK----TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVF 125 (327)
T ss_pred ----------ecCCcceeeeccccceeEEEEcCCCcEEEEee----cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEE
Confidence 45556679999999999999999999887777 567899999999999888761 234689999
Q ss_pred eCC-------CceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEE
Q psy8285 237 HEQ-------EERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYL 307 (507)
Q Consensus 237 d~~-------~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 307 (507)
|++ ..++...+..+...++.+-| -++.|++|..||.|.+||++++.+.......|...|+.+.+++|..++
T Consensus 126 di~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~F 205 (327)
T KOG0643|consen 126 DIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYF 205 (327)
T ss_pred EccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceE
Confidence 988 34567778888899999999 589999999999999999999877777778899999999999999999
Q ss_pred EEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC------------ee
Q psy8285 308 ASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK------------EK 374 (507)
Q Consensus 308 ~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------------~~ 374 (507)
++++ |.+-++||.++. ..++++. ...+|++.+++|-...++..|+ ..-..|.--+.+.++ .+
T Consensus 206 iT~s~Dttakl~D~~tl---~v~Kty~-te~PvN~aaisP~~d~VilgGG-qeA~dVTTT~~r~GKFEArFyh~i~eEEi 280 (327)
T KOG0643|consen 206 ITGSKDTTAKLVDVRTL---EVLKTYT-TERPVNTAAISPLLDHVILGGG-QEAMDVTTTSTRAGKFEARFYHLIFEEEI 280 (327)
T ss_pred EecccCccceeeeccce---eeEEEee-ecccccceecccccceEEecCC-ceeeeeeeecccccchhhhHHHHHHHHHh
Confidence 9999 799999999987 6777766 6779999999998766666554 222334434444443 34
Q ss_pred eeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 375 CHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 375 ~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
..+++| ++|++++|+|+|+..++ |++||.|++.-..
T Consensus 281 grvkGHFGPINsvAfhPdGksYsS--GGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 281 GRVKGHFGPINSVAFHPDGKSYSS--GGEDGYVRLHHFD 317 (327)
T ss_pred ccccccccCcceeEECCCCccccc--CCCCceEEEEEec
Confidence 455666 89999999999999999 9999999997554
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=237.36 Aligned_cols=280 Identities=16% Similarity=0.292 Sum_probs=239.1
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
+..++|+|.. ++++--.|.|++||.+-+..... +.+ |.++|..++|+|.++.++++ +.|-.|++|+..+.+++.
T Consensus 12 vKglsFHP~rPwILtslHsG~IQlWDYRM~tli~r--Fde-HdGpVRgv~FH~~qplFVSG-GDDykIkVWnYk~rrclf 87 (1202)
T KOG0292|consen 12 VKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDR--FDE-HDGPVRGVDFHPTQPLFVSG-GDDYKIKVWNYKTRRCLF 87 (1202)
T ss_pred ccceecCCCCCEEEEeecCceeeeehhhhhhHHhh--hhc-cCCccceeeecCCCCeEEec-CCccEEEEEecccceehh
Confidence 5579999988 77777999999999987765544 444 99999999999999999999 999999999999999999
Q ss_pred EEeecCccEEEEEee--CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q psy8285 246 KLRTHMHQVIAMCWN--GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQ 322 (507)
Q Consensus 246 ~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~ 322 (507)
++.+|-.-|..+.|. -.+|++++.|.+|+||+..++. +...+.+|...|.|..|+|....+++++ |.+|++||+..
T Consensus 88 tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 88 TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISG 166 (1202)
T ss_pred hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceEEEeeccCCccceEEEecccceEEEEeecc
Confidence 999999999999994 5689999999999999999876 7889999999999999999999999999 99999999864
Q ss_pred CCC--------------------------CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC--ee
Q psy8285 323 LDA--------------------------KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK--EK 374 (507)
Q Consensus 323 ~~~--------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~ 374 (507)
... .-....+.+|...|+-++|+|.- -++++|+. |+.|++|.+..-+ .+
T Consensus 167 LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~D--DRqVKlWrmnetKaWEv 243 (1202)
T KOG0292|consen 167 LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGAD--DRQVKLWRMNETKAWEV 243 (1202)
T ss_pred hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCC--cceeeEEEeccccceee
Confidence 210 01123467899999999999976 47777765 9999999986654 23
Q ss_pred eeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 375 CHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 375 ~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
-+..+| +.|.++-|+|....+++ .++|++|+|||+...+.+++++....+.+.++-+|..+++++| .|+-+.+|.+
T Consensus 244 DtcrgH~nnVssvlfhp~q~lIlS--nsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkl 320 (1202)
T KOG0292|consen 244 DTCRGHYNNVSSVLFHPHQDLILS--NSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKL 320 (1202)
T ss_pred hhhhcccCCcceEEecCccceeEe--cCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEE
Confidence 345556 78999999999999999 8899999999999999999998888899999999999877655 5667889998
Q ss_pred CCCCc
Q psy8285 454 FPRDK 458 (507)
Q Consensus 454 ~~~~~ 458 (507)
+...+
T Consensus 321 eRErp 325 (1202)
T KOG0292|consen 321 ERERP 325 (1202)
T ss_pred cccCc
Confidence 85544
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=203.50 Aligned_cols=272 Identities=20% Similarity=0.338 Sum_probs=214.3
Q ss_pred EEEEEccC-CCeEEEEe------CCCCcEEEEeCCCceeEEEEee--cCccEEEEEe---eCCEEEEEecCCeEEEEECC
Q psy8285 212 SCVAWKPR-TTDLAVTN------TCTEYIDLWHEQEERLIQKLRT--HMHQVIAMCW---NGNLLSCGTIGGNILHYDVR 279 (507)
Q Consensus 212 ~~~~~~~~-~~~l~~~~------~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~ 279 (507)
.++.|||- ..+|+++. ...|++.|.++...+-+..+.. -...+..++| ..+.+++++.||.+++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 67888884 23444431 2478999999976555555443 5678899999 47789999999999999988
Q ss_pred CCCcCceeeecCCCceEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEcc
Q psy8285 280 THSDYPTAITREGDVVCGLKWSPNG-RYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGG 357 (507)
Q Consensus 280 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 357 (507)
....+...++.|+.+|.++.|++.. +.+++++ |++|++|+...+ ..+.++.+|..-|+..+|+|....+++++++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~---~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg 168 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP---NSVQTFNGHNSCIYQAAFSPHIPNLFASASG 168 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCC---cceEeecCCccEEEEEecCCCCCCeEEEccC
Confidence 8777889999999999999999854 4566667 899999999887 8899999999999999999999999999988
Q ss_pred CCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc-cEEEEeeccccceeEEEECCC
Q psy8285 358 ICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL-HLIEELKIHQERILSAVLSPD 435 (507)
Q Consensus 358 ~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~s~~ 435 (507)
|+++++||++..-....+..| .++.++.|+.-...++++ |+.|+.|++||+++. .++.++.+|.-.|+.+.|||.
T Consensus 169 --d~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~T-g~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph 245 (311)
T KOG0277|consen 169 --DGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLAT-GGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPH 245 (311)
T ss_pred --CceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEe-cCCCceEEEEehhhccccceeecCCceEEEEEecCcc
Confidence 999999999865444446666 599999999988777766 889999999999875 678899999999999999996
Q ss_pred -CCEEEEEeCCCcEEEEecCCCCccc-cee-ecCCCcceEEeeccCccccceeeeecccccc
Q psy8285 436 -QTCVAAASADETISIWNCFPRDKKR-KAR-QVGSGSSLEFAILKQPVSLTALLRSRAVEKQ 494 (507)
Q Consensus 436 -~~~l~s~~~dg~i~iw~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
...|++++.|-+++|||...+.... +.. +.+-+-.++|++ + ..+.+...+|+..
T Consensus 246 ~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~----~-~~~~vAs~gWDe~ 302 (311)
T KOG0277|consen 246 HASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSL----F-DPGQVASTGWDEL 302 (311)
T ss_pred hhhHhhhccccceEEecccccchhhhhhhhccceEEecccccc----c-cCceeeecccccc
Confidence 4588999999999999998544332 222 222223334443 3 4456667777654
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=204.32 Aligned_cols=259 Identities=18% Similarity=0.229 Sum_probs=213.2
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEec--CCeEEEEECCCCC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTI--GGNILHYDVRTHS 282 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~--dg~i~i~d~~~~~ 282 (507)
....|.++.|+++|.+++++ +.|..++|||..+++.++++..+...+..++| ..+.++.++. |.+|+..++.+.+
T Consensus 13 ~~~~i~sl~fs~~G~~lits-s~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITS-SEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred CCCceeEEEecCCCCEEEEe-cCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence 46789999999999999998 99999999999999999999998888888888 4555556655 7899999999876
Q ss_pred cCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC
Q psy8285 283 DYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ 361 (507)
Q Consensus 283 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~ 361 (507)
..+.+.+|...|.+++.+|-+..+++++ |++|++||++.. ++...+. ...-..++|.|.| .+++++.+ ..
T Consensus 92 -ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~---~cqg~l~--~~~~pi~AfDp~G-LifA~~~~--~~ 162 (311)
T KOG1446|consen 92 -YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK---KCQGLLN--LSGRPIAAFDPEG-LIFALANG--SE 162 (311)
T ss_pred -eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC---CCceEEe--cCCCcceeECCCC-cEEEEecC--CC
Confidence 7889999999999999999999999999 899999999976 4444443 2333468999998 67777664 45
Q ss_pred eEEEEeCCCC--Ceeeeeec----CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccce---eEEEE
Q psy8285 362 TVRLWNSMNG--KEKCHVKT----DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERI---LSAVL 432 (507)
Q Consensus 362 ~i~i~d~~~~--~~~~~~~~----~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i---~~~~~ 432 (507)
.|++||++.- .+...+.. ..+.+.+.|||||++|+. ....+.+++.|.-+|..+.++..+...- ....|
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl--sT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL--STNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE--EeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 9999999864 33333332 367999999999999999 6788999999999999999988775543 57789
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCCCcccceee--cCCCcceEEeecc
Q psy8285 433 SPDQTCVAAASADETISIWNCFPRDKKRKARQ--VGSGSSLEFAILK 477 (507)
Q Consensus 433 s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~ 477 (507)
+||++++++|+.||+|.+|+++++++...... .++...+.|.|..
T Consensus 241 tPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~ 287 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRY 287 (311)
T ss_pred CCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCce
Confidence 99999999999999999999999998887665 3455555555543
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-29 Score=201.28 Aligned_cols=278 Identities=16% Similarity=0.230 Sum_probs=227.6
Q ss_pred ceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 167 YTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.++.+.++.+| +++++.|....+|-..+|+.+-. ..| |.+.|.|+....+.++++++ +.|.++++||+.+|+.+
T Consensus 12 plTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGt--y~G-HtGavW~~Did~~s~~liTG-SAD~t~kLWDv~tGk~l 87 (327)
T KOG0643|consen 12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGT--YDG-HTGAVWCCDIDWDSKHLITG-SADQTAKLWDVETGKQL 87 (327)
T ss_pred ccceEEecCCCcEEEEecCCCCceEEEecCCceeee--ecC-CCceEEEEEecCCcceeeec-cccceeEEEEcCCCcEE
Confidence 46678888888 77788999999999888886544 455 99999999999999999999 99999999999999999
Q ss_pred EEEeecCccEEEEEe--eCCEEEEEecC-----CeEEEEECCCCC------cCceeeecCCCceEEEEEcCCCCEEEEEe
Q psy8285 245 QKLRTHMHQVIAMCW--NGNLLSCGTIG-----GNILHYDVRTHS------DYPTAITREGDVVCGLKWSPNGRYLASGS 311 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~~~~l~~~~~d-----g~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 311 (507)
..++ ...+|..+.| ++++++....+ +.|.++|++... .+...+..+...++.+-|.|-+++|++|.
T Consensus 88 a~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh 166 (327)
T KOG0643|consen 88 ATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH 166 (327)
T ss_pred EEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec
Confidence 9887 5567888888 67777766543 579999998432 34566677788999999999999999999
Q ss_pred -CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECC
Q psy8285 312 -NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSE 390 (507)
Q Consensus 312 -d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~ 390 (507)
||.|.+||.+++ .+.+.....|...|+.+.++|+..++ ++++. |.+-++||.++-+.++++....++++.+++|
T Consensus 167 e~G~is~~da~~g--~~~v~s~~~h~~~Ind~q~s~d~T~F-iT~s~--Dttakl~D~~tl~v~Kty~te~PvN~aaisP 241 (327)
T KOG0643|consen 167 EDGSISIYDARTG--KELVDSDEEHSSKINDLQFSRDRTYF-ITGSK--DTTAKLVDVRTLEVLKTYTTERPVNTAAISP 241 (327)
T ss_pred CCCcEEEEEcccC--ceeeechhhhccccccccccCCcceE-Eeccc--CccceeeeccceeeEEEeeecccccceeccc
Confidence 599999999987 24455556799999999999998544 45544 9999999999999999999999999999999
Q ss_pred CCCeEEEEeccCC-CeEEE------------EeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 391 QYRELVTSHGKQD-CSLKM------------WEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 391 ~~~~l~~~~g~~d-~~i~v------------~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
-...++.+ |+.+ ..|.- |++-..+.+..+++|-++|++++|+|+|+..++|+.||.|++..+..
T Consensus 242 ~~d~Vilg-GGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 242 LLDHVILG-GGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred ccceEEec-CCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 98888875 3322 22222 22222345667889999999999999999999999999999986653
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=223.47 Aligned_cols=239 Identities=17% Similarity=0.357 Sum_probs=183.9
Q ss_pred ceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEE----------ecCCCCCCceEEEEEccCCCe-EEEEeCCCCcE
Q psy8285 167 YTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLV----------EYPTYDNAYISCVAWKPRTTD-LAVTNTCTEYI 233 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~-l~~~~~~dg~i 233 (507)
.|+++.|++.+ +|+++...+.+|+|-...+..... ...| |...++|.+|+|..+. ++++ +.||++
T Consensus 216 ~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKG-Hia~lt~g~whP~~k~~FlT~-s~Dgtl 293 (641)
T KOG0772|consen 216 QINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKG-HIAELTCGCWHPDNKEEFLTC-SYDGTL 293 (641)
T ss_pred ccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCC-ceeeeeccccccCcccceEEe-cCCCcE
Confidence 36678888876 888888889999998765544332 2346 9999999999998754 5555 999999
Q ss_pred EEEeCCCcee-EEEEe-----ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc--CceeeecCCC--ceEEEEEc
Q psy8285 234 DLWHEQEERL-IQKLR-----THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD--YPTAITREGD--VVCGLKWS 301 (507)
Q Consensus 234 ~iwd~~~~~~-~~~~~-----~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~--~v~~~~~~ 301 (507)
+|||+.+.+. ++.+. +..-+++.++| +++.||+|..||.|.+|+...... .......|.. .|+|+.||
T Consensus 294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred EEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 9999987543 22332 24456788999 799999999999999999865431 2334456766 89999999
Q ss_pred CCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecC--CCCCeeEEEEccCCCcEEEEEcc----CCCCeEEEEeCCCCCee
Q psy8285 302 PNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQC--HLSAVKAIAWCPWEPTLLATGGG----ICDQTVRLWNSMNGKEK 374 (507)
Q Consensus 302 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~----~~d~~i~i~d~~~~~~~ 374 (507)
+||++|++-+ |+++++||+++.+ +++....+ ...+-+.++|||+. .++++|.. ...+.+.+||..+.+.+
T Consensus 374 ~dg~~LlSRg~D~tLKvWDLrq~k--kpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d~v 450 (641)
T KOG0772|consen 374 YDGNYLLSRGFDDTLKVWDLRQFK--KPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLDTV 450 (641)
T ss_pred cccchhhhccCCCceeeeeccccc--cchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccceeeE
Confidence 9999999988 7999999999873 44444433 34456789999998 67776642 12468999999999988
Q ss_pred eeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 375 CHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 375 ~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
+.+... ..|..+.|+|.=+.|++ |+.||.++||--.
T Consensus 451 ~ki~i~~aSvv~~~WhpkLNQi~~--gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 451 YKIDISTASVVRCLWHPKLNQIFA--GSGDGTAHVYYDP 487 (641)
T ss_pred EEecCCCceEEEEeecchhhheee--ecCCCceEEEECc
Confidence 888766 67999999999999999 7889999997533
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-31 Score=220.86 Aligned_cols=283 Identities=19% Similarity=0.356 Sum_probs=227.9
Q ss_pred CCcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEee
Q psy8285 1 NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVD 79 (507)
Q Consensus 1 ~l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 79 (507)
.|.||.++|.|||=+|..-..+|||+ .||.|+|||+.+..++.+++ |.+.|..|++.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs--~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~-------------------- 118 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGS--CDGEVKIWNLSQRECIRTFKAHEGLVRGICVT-------------------- 118 (433)
T ss_pred hccccccccchhhcCcchhhhhhccc--cCceEEEEehhhhhhhheeecccCceeeEEec--------------------
Confidence 48899999999999998756799999 89999999999999999988 66677777653
Q ss_pred cCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcC
Q psy8285 80 RSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEA 159 (507)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (507)
T Consensus 119 -------------------------------------------------------------------------------- 118 (433)
T KOG0268|consen 119 -------------------------------------------------------------------------------- 118 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC
Q psy8285 160 PSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ 239 (507)
Q Consensus 160 ~~~~~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~ 239 (507)
...++++|.|.+|+.|.+... +...+. .+..+..+.-+..+..++++ ...|.|||.+
T Consensus 119 ---------------~~~~~tvgdDKtvK~wk~~~~-p~~til----g~s~~~gIdh~~~~~~FaTc---Ge~i~IWD~~ 175 (433)
T KOG0268|consen 119 ---------------QTSFFTVGDDKTVKQWKIDGP-PLHTIL----GKSVYLGIDHHRKNSVFATC---GEQIDIWDEQ 175 (433)
T ss_pred ---------------ccceEEecCCcceeeeeccCC-cceeee----cccccccccccccccccccc---Cceeeecccc
Confidence 123788999999999998653 333333 35567777777666677766 4469999999
Q ss_pred CceeEEEEeecCccEEEEEee---CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 240 EERLIQKLRTHMHQVIAMCWN---GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
...+++.+.-....|.++.|+ ...|+++..|+.|.+||+++........ ....-+.++|+|.+-.+++++ |..+
T Consensus 176 R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~ED~nl 253 (433)
T KOG0268|consen 176 RDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANEDHNL 253 (433)
T ss_pred cCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee--eeccccceecCccccceeeccccccc
Confidence 989999999888999999995 6789999999999999999987333333 234557799999776677777 6999
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC--CCeEEEEECCCCC
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD--SQVTSILWSEQYR 393 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~s~~~~ 393 (507)
+.||++.. ..++....+|...|.++.|+|.|..+++ +++|.+|+||..+.+...-..... ..|.++.||.|.+
T Consensus 254 Y~~DmR~l--~~p~~v~~dhvsAV~dVdfsptG~Efvs---gsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 254 YTYDMRNL--SRPLNVHKDHVSAVMDVDFSPTGQEFVS---GSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSK 328 (433)
T ss_pred eehhhhhh--cccchhhcccceeEEEeccCCCcchhcc---ccccceEEEeecCCCcchhhhhHhhhheeeEEEEecccc
Confidence 99999986 3678888899999999999999976665 346999999999887654433322 5699999999999
Q ss_pred eEEEEeccCCCeEEEEeCCCccEE
Q psy8285 394 ELVTSHGKQDCSLKMWEYPRLHLI 417 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~~~~~ 417 (507)
|+++ |++|+.|++|.....+.+
T Consensus 329 yi~S--GSdd~nvRlWka~Asekl 350 (433)
T KOG0268|consen 329 YIIS--GSDDGNVRLWKAKASEKL 350 (433)
T ss_pred EEEe--cCCCcceeeeecchhhhc
Confidence 9999 999999999997654443
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-30 Score=238.45 Aligned_cols=240 Identities=17% Similarity=0.317 Sum_probs=197.3
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC--------------------------------c-------------
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE--------------------------------E------------- 241 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~--------------------------------~------------- 241 (507)
|.+.|.++.|++||+|||++ +.|+.|+||.+.. .
T Consensus 266 h~gaIw~mKFS~DGKyLAsa-GeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 266 HKGAIWAMKFSHDGKYLASA-GEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred cCCcEEEEEeCCCCceeeec-CCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 99999999999999999999 9999999998754 0
Q ss_pred ---------------eeEEEEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC-CC
Q psy8285 242 ---------------RLIQKLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP-NG 304 (507)
Q Consensus 242 ---------------~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 304 (507)
+++..+.+|.+.|.+++| ..++|++++.|.+|++|++...+ ++ ....|.+.|+|++|+| |.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~-CL-~~F~HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKE-CL-KVFSHNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcc-ee-eEEecCCeeEEEEecccCC
Confidence 112345689999999999 68899999999999999999755 34 4556999999999999 78
Q ss_pred CEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec----
Q psy8285 305 RYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT---- 379 (507)
Q Consensus 305 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---- 379 (507)
+++++|+ |+.|+||++... .+..+..-..-|++++|.|+|+..++ |+++|.+++|+....+.......
T Consensus 423 ryFiSGSLD~KvRiWsI~d~----~Vv~W~Dl~~lITAvcy~PdGk~avI---Gt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDK----KVVDWNDLRDLITAVCYSPDGKGAVI---GTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred CcEeecccccceEEeecCcC----eeEeehhhhhhheeEEeccCCceEEE---EEeccEEEEEEccCCeEEEeeeEeecc
Confidence 9999999 999999999874 44444445688999999999966655 34699999999988776554421
Q ss_pred -----CCCeEEEEECCCCC-eEEEEeccCCCeEEEEeCCCccEEEEeecccc--ceeEEEECCCCCEEEEEeCCCcEEEE
Q psy8285 380 -----DSQVTSILWSEQYR-ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQE--RILSAVLSPDQTCVAAASADETISIW 451 (507)
Q Consensus 380 -----~~~i~~~~~s~~~~-~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~s~~~dg~i~iw 451 (507)
+..|+.++|.|... .+++ .+.|..|+|||.+...++..++++.. .-....|+.||++|+++++|..|++|
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLV--TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLV--TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEE--ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 23699999998655 3555 36899999999998889988987543 23567899999999999999999999
Q ss_pred ecCCCCc
Q psy8285 452 NCFPRDK 458 (507)
Q Consensus 452 ~~~~~~~ 458 (507)
++.....
T Consensus 574 ~~~~~~~ 580 (712)
T KOG0283|consen 574 KNDSFNS 580 (712)
T ss_pred eCCCCcc
Confidence 9865443
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-30 Score=223.83 Aligned_cols=264 Identities=19% Similarity=0.297 Sum_probs=229.9
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY 284 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 284 (507)
..+.|.+++|+|..++=++. ...-.+.||+..+....+.+......+.+++| ||++|++|+..|.|++||+.+. ..
T Consensus 25 e~~~vssl~fsp~~P~d~aV-t~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r-~i 102 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAV-TSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR-VI 102 (487)
T ss_pred ccCcceeEecCCCCCCceEE-ecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH-HH
Confidence 45789999999988765554 46778999999988888888888899999999 8999999999999999996653 36
Q ss_pred ceeeecCCCceEEEEEcCCCC-EEEEEeC-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCe
Q psy8285 285 PTAITREGDVVCGLKWSPNGR-YLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQT 362 (507)
Q Consensus 285 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~ 362 (507)
...+.+|..++..+.|+|+++ .+++|+| +.+++||+.+. .....+.+|+..|.+.+|+|...+++++|+ +||.
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a---~v~~~l~~htDYVR~g~~~~~~~hivvtGs--YDg~ 177 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA---YVQAELSGHTDYVRCGDISPANDHIVVTGS--YDGK 177 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc---EEEEEecCCcceeEeeccccCCCeEEEecC--CCce
Confidence 778899999999999999655 5667776 99999999987 445678899999999999999989999987 5999
Q ss_pred EEEEeCCCC-CeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc-cEEEEeeccccceeEEEECCCCCEEE
Q psy8285 363 VRLWNSMNG-KEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL-HLIEELKIHQERILSAVLSPDQTCVA 440 (507)
Q Consensus 363 i~i~d~~~~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~ 440 (507)
|++||++.. ..+..+.+..+|..+.+-|.|..++++. .+.|+|||+.+| +.+..+..|...|+|+.+..++..|+
T Consensus 178 vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg---Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 178 VRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG---GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred EEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC---CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEe
Confidence 999999987 7788888889999999999999999952 468999999855 55556666999999999999999999
Q ss_pred EEeCCCcEEEEecCCCCcccceeecCCCcceEEeeccCcc
Q psy8285 441 AASADETISIWNCFPRDKKRKARQVGSGSSLEFAILKQPV 480 (507)
Q Consensus 441 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (507)
+++-|+.|++|++.+-+........+++.+++.+++...+
T Consensus 255 S~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~ 294 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTV 294 (487)
T ss_pred ecccccceEEEEccceEEEEeeecccceeeEEecCCCceE
Confidence 9999999999999999999999999999999999866543
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=236.48 Aligned_cols=200 Identities=17% Similarity=0.345 Sum_probs=168.0
Q ss_pred EEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEE
Q psy8285 199 LLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILH 275 (507)
Q Consensus 199 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i 275 (507)
++..+.| |.+.|..+.|+.++ +|+++ +.|.+|++|++...+++..+. |..-|+|++| |.++|++|+-||.|+|
T Consensus 361 P~~ef~G-Ht~DILDlSWSKn~-fLLSS-SMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRi 436 (712)
T KOG0283|consen 361 PFCEFKG-HTADILDLSWSKNN-FLLSS-SMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRL 436 (712)
T ss_pred chhhhhc-cchhheecccccCC-eeEec-cccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEE
Confidence 4566777 99999999999764 88888 999999999999999999886 9999999999 7999999999999999
Q ss_pred EECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeee---------cCCCCCeeEEEEc
Q psy8285 276 YDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNN---------QCHLSAVKAIAWC 345 (507)
Q Consensus 276 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~---------~~~~~~v~~~~~~ 345 (507)
|++...+ ......-...|++++|.|||+..++|+ +|.+++|+.... +..... ..|. .|+.+.|.
T Consensus 437 WsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l---k~~~~~~I~~~~~Kk~~~~-rITG~Q~~ 510 (712)
T KOG0283|consen 437 WSISDKK--VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL---KLVSDFHIRLHNKKKKQGK-RITGLQFF 510 (712)
T ss_pred eecCcCe--eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCC---eEEEeeeEeeccCccccCc-eeeeeEec
Confidence 9998765 444555568899999999999999999 799999999875 222111 1133 79999999
Q ss_pred cCCCc-EEEEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 346 PWEPT-LLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 346 ~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
|.... ++++.. |..|+|||.++.+++..+++. ..-....|+.||++|++ +++|..|++|++..
T Consensus 511 p~~~~~vLVTSn---DSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs--~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 511 PGDPDEVLVTSN---DSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVS--ASEDSWVYIWKNDS 577 (712)
T ss_pred CCCCCeEEEecC---CCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEE--eecCceEEEEeCCC
Confidence 86654 777665 999999999999988888765 34567889999999999 78999999999854
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=202.50 Aligned_cols=265 Identities=14% Similarity=0.272 Sum_probs=218.3
Q ss_pred EEEEEcCCeEEEEECCCC----------ceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE
Q psy8285 178 TLAVALDTSVYTWNTKTN----------KTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~ 247 (507)
+++++....|.-+++.-. ...+++.++. |.++|++++.+ +++++++ +.|-+|+|||++....+..+
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~a-H~~sitavAVs--~~~~aSG-ssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSA-HAGSITALAVS--GPYVASG-SSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccc-cccceeEEEec--ceeEecc-CCCCcEEEEeccchhhhcce
Confidence 677778877777765432 1234566666 99999999986 8899999 99999999999999999999
Q ss_pred eecCccEEEEEee----CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q psy8285 248 RTHMHQVIAMCWN----GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQ 322 (507)
Q Consensus 248 ~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~ 322 (507)
..|.+.|+++.|. ...|++|+.||.|.+|+...-. ....+.+|...|+.++.+|.+++.++.+ |+.+++||+-.
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~-~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~ 158 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE-LLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVR 158 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE-EeeeecccccccceeEecCCCceEEEEcCCceeeeehhhc
Confidence 9999999999993 3379999999999999998874 7888999999999999999999976665 79999999988
Q ss_pred CCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccC
Q psy8285 323 LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQ 402 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~ 402 (507)
+ +.-.... -....+.+.|+|.|.++++.+ ...|-+|.+.+.+....+.....+.++.|- ++.+|++ |.+
T Consensus 159 G---r~a~v~~-L~~~at~v~w~~~Gd~F~v~~----~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~v--G~d 227 (362)
T KOG0294|consen 159 G---RVAFVLN-LKNKATLVSWSPQGDHFVVSG----RNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLV--GGD 227 (362)
T ss_pred C---ccceeec-cCCcceeeEEcCCCCEEEEEe----ccEEEEEecccHhHhhhhhccccceeeeec-CCceEEE--ecC
Confidence 7 3332222 222344599999998776655 578999999888877777666667777776 4567777 788
Q ss_pred CCeEEEEeCCCccEEEEeeccccceeEEEE--CCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 403 DCSLKMWEYPRLHLIEELKIHQERILSAVL--SPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 403 d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
|+.|.+||..+..++..+.+|..+|-++.+ .|++.+|+++|.||.|++||+.....
T Consensus 228 ~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 228 NEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred CceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccccc
Confidence 999999999999999999999999999984 56788999999999999999987643
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=212.60 Aligned_cols=274 Identities=19% Similarity=0.254 Sum_probs=234.2
Q ss_pred eeeeeeCC--CCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 168 TSGLDWGY--HDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 168 i~~~~~s~--~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
+.++...| +.+++++.|..+.++|...++...+ ++| |...|+.+.|+|+...++++ +.|..|+||.........
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~--~~G-h~kki~~v~~~~~~~~v~~a-Sad~~i~vws~~~~s~~~ 297 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDKPSNQILAT--LKG-HTKKITSVKFHKDLDTVITA-SADEIIRVWSVPLSSEPT 297 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEecchhhhhhh--ccC-cceEEEEEEeccchhheeec-CCcceEEeeccccccCcc
Confidence 66777777 4588899999999999988876655 455 99999999999999999999 999999999998888888
Q ss_pred EEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeec-CCCceEEEEEcCCCCEEEEEe-CCcEEEEEcC
Q psy8285 246 KLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITR-EGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR 321 (507)
Q Consensus 246 ~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~ 321 (507)
....|..+|+.+.. +|.+|++++.|++..+.|++++......... ..-.+++.+|+|||.+|.+|. |+.+++||+.
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlk 377 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLK 377 (506)
T ss_pred ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcC
Confidence 88899999999988 7999999999999999999998743333221 234589999999999999999 7999999999
Q ss_pred CCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC--CCeEEEEECCCCCeEEEEe
Q psy8285 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD--SQVTSILWSEQYRELVTSH 399 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~ 399 (507)
.+ .....+.+|.++|..++|+.+| ++++++.. |+.|++||++..+...++... .++.++.|.+.|.+|+.
T Consensus 378 s~---~~~a~Fpght~~vk~i~FsENG-Y~Lat~ad--d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~-- 449 (506)
T KOG0289|consen 378 SQ---TNVAKFPGHTGPVKAISFSENG-YWLATAAD--DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGI-- 449 (506)
T ss_pred Cc---cccccCCCCCCceeEEEeccCc-eEEEEEec--CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEe--
Confidence 98 7888999999999999999988 66666654 888999999998887777665 46999999999999999
Q ss_pred ccCCCeEEEEeCC--CccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 400 GKQDCSLKMWEYP--RLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 400 g~~d~~i~v~d~~--~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
++.+=.|++++-. +..++..+..|.+..+.+.|....++++++|.|..++++.+
T Consensus 450 ~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 450 AGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 6555556666532 56788888889999999999999999999999999998865
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-29 Score=218.35 Aligned_cols=283 Identities=17% Similarity=0.277 Sum_probs=221.6
Q ss_pred cceeeeeeCCCC--EEEEEcCCeEEEEECCCCce--eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc
Q psy8285 166 FYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKT--QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE 241 (507)
Q Consensus 166 ~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~ 241 (507)
..|.+++..|.| +++++.|-.|++||+..... .....+.......|.++.|++.|..|++. +.....+|+|-...
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvv-sg~aqakl~DRdG~ 246 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVV-SGSAQAKLLDRDGF 246 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEE-ecCcceeEEccCCc
Confidence 347888898887 88999999999999976331 11111111145679999999999999988 88889999996654
Q ss_pred eeEEE------------EeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeee-----cCCCceEEEEEc
Q psy8285 242 RLIQK------------LRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAIT-----REGDVVCGLKWS 301 (507)
Q Consensus 242 ~~~~~------------~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~ 301 (507)
+.... .++|...++|-+| +...+++++.||++++||+.........+. +..-.++.++|+
T Consensus 247 ~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~n 326 (641)
T KOG0772|consen 247 EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWN 326 (641)
T ss_pred eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecC
Confidence 43322 3478899999999 567899999999999999987664443332 234468899999
Q ss_pred CCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCC--CeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC-eeeee
Q psy8285 302 PNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLS--AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHV 377 (507)
Q Consensus 302 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~ 377 (507)
+|+++||+|. ||.|.+|+............-.+|.. .|+++.||++|++|+.-+. |.++++||++..+ ++...
T Consensus 327 rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~---D~tLKvWDLrq~kkpL~~~ 403 (641)
T KOG0772|consen 327 RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGF---DDTLKVWDLRQFKKPLNVR 403 (641)
T ss_pred CCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccC---CCceeeeeccccccchhhh
Confidence 9999999998 79999999876544445555667877 8999999999977766544 9999999998764 44443
Q ss_pred ec---CCCeEEEEECCCCCeEEEEe----ccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEE
Q psy8285 378 KT---DSQVTSILWSEQYRELVTSH----GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISI 450 (507)
Q Consensus 378 ~~---~~~i~~~~~s~~~~~l~~~~----g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~i 450 (507)
.+ ...-+.++|||+.+.|++++ +...|.+.+||..+.+.++.+.-....|..+.|+|.=+.|+.++.||.+++
T Consensus 404 tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~v 483 (641)
T KOG0772|consen 404 TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHV 483 (641)
T ss_pred cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEE
Confidence 32 24568899999999999953 223568999999999999998877888999999999888999999999998
Q ss_pred Ee
Q psy8285 451 WN 452 (507)
Q Consensus 451 w~ 452 (507)
|=
T Consensus 484 yY 485 (641)
T KOG0772|consen 484 YY 485 (641)
T ss_pred EE
Confidence 63
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-27 Score=227.59 Aligned_cols=277 Identities=18% Similarity=0.204 Sum_probs=205.9
Q ss_pred eeeCCCCEEEEEcCCeEEEEECCCCce----------eE-EEecCCCCCCceEEEEEcc-CCCeEEEEeCCCCcEEEEeC
Q psy8285 171 LDWGYHDTLAVALDTSVYTWNTKTNKT----------QL-LVEYPTYDNAYISCVAWKP-RTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 171 ~~~s~~~~~~~~~~~~i~iw~~~~~~~----------~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~dg~i~iwd~ 238 (507)
.+|....+++++.+.....|+...+.. .. ...+.+ |.+.|.+++|+| ++.+|+++ +.|++|++||+
T Consensus 28 ~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~G-H~~~V~~v~fsP~d~~~LaSg-S~DgtIkIWdi 105 (493)
T PTZ00421 28 ALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLG-QEGPIIDVAFNPFDPQKLFTA-SEDGTIMGWGI 105 (493)
T ss_pred ccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeC-CCCCEEEEEEcCCCCCEEEEE-eCCCEEEEEec
Confidence 344434466665555555665443321 11 112445 999999999999 77888888 99999999999
Q ss_pred CCc-------eeEEEEeecCccEEEEEee---CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEE
Q psy8285 239 QEE-------RLIQKLRTHMHQVIAMCWN---GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLA 308 (507)
Q Consensus 239 ~~~-------~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 308 (507)
.++ +.+..+.+|...|.+++|+ +++|++++.|+.|++||+++++ ....+..|...|.+++|+|++++|+
T Consensus 106 ~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~lLa 184 (493)
T PTZ00421 106 PEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGSLLC 184 (493)
T ss_pred CCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-EEEEEcCCCCceEEEEEECCCCEEE
Confidence 765 3466788999999999993 4699999999999999999875 5567778999999999999999999
Q ss_pred EEe-CCcEEEEEcCCCCCCCCeeeecCCCCC-eeEEEEccCCCcEEEEEc-cCCCCeEEEEeCCCCC-eeeeeecC--CC
Q psy8285 309 SGS-NNTVKIWDFRQLDAKRPQVNNQCHLSA-VKAIAWCPWEPTLLATGG-GICDQTVRLWNSMNGK-EKCHVKTD--SQ 382 (507)
Q Consensus 309 ~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~-~~~~~~~~--~~ 382 (507)
+++ |+.|++||++++ +.+..+.+|.+. +..+.|.+++..+++++. .+.|+.|++||+++.. ++.....+ ..
T Consensus 185 tgs~Dg~IrIwD~rsg---~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~ 261 (493)
T PTZ00421 185 TTSKDKKLNIIDPRDG---TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA 261 (493)
T ss_pred EecCCCEEEEEECCCC---cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc
Confidence 999 799999999987 677777778764 457789998877776652 2348999999998764 33333322 45
Q ss_pred eEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec-cccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 383 VTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI-HQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 383 i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
+....|++++++|+++ |..|+.|++||+.+++++..... +..++..++|.|.... -...-...++|.+...
T Consensus 262 ~~~~~~d~d~~~L~lg-gkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~~--dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 262 LFIPFFDEDTNLLYIG-SKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWSL--DTRKCEIARFYALTYH 333 (493)
T ss_pred eEEEEEcCCCCEEEEE-EeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccccc--cccceeeeEEEEecCC
Confidence 6677899999999884 44699999999999887766543 3456788889885321 1222234577777543
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-28 Score=222.46 Aligned_cols=308 Identities=17% Similarity=0.225 Sum_probs=233.1
Q ss_pred ccccceeeeeeCCCC--EEEEEcCCeEEEEECCCC--ceeEEE---ecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEE
Q psy8285 163 INDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTN--KTQLLV---EYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDL 235 (507)
Q Consensus 163 ~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~--~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~i 235 (507)
.++-+|.++.|+|.+ +|+++.|.++.+|...+. -..... ...| .........|+|++..+++- +..|..++
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg-~a~GF~g~lw~~n~~~ii~~-g~~Gg~hl 342 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGG-SAGGFWGGLWSPNSNVIIAH-GRTGGFHL 342 (764)
T ss_pred CcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccc-cccceeeEEEcCCCCEEEEe-cccCcEEE
Confidence 345578899999998 899999999999998764 233333 2333 45668999999999888887 89999999
Q ss_pred EeCCCc---eeEEEEeecCccEEEEEee--CCEEEEEecCCeEEEEECCCCCc---CceeeecCCCceEEEEEcCCCCEE
Q psy8285 236 WHEQEE---RLIQKLRTHMHQVIAMCWN--GNLLSCGTIGGNILHYDVRTHSD---YPTAITREGDVVCGLKWSPNGRYL 307 (507)
Q Consensus 236 wd~~~~---~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l 307 (507)
|...+. .....+.+|...|.++.|+ |.+|++.+.|.+-+++-.-..+. .....+-|...++|++|-+....+
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F 422 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF 422 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence 983332 2344567899999999995 99999999999999987653221 233445688889999999866667
Q ss_pred EEEeC-CcEEEEEcCCC-------------------------------------------CC------------------
Q psy8285 308 ASGSN-NTVKIWDFRQL-------------------------------------------DA------------------ 325 (507)
Q Consensus 308 ~~~~d-~~i~i~d~~~~-------------------------------------------~~------------------ 325 (507)
++|.| ..+++|+.... ..
T Consensus 423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e 502 (764)
T KOG1063|consen 423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE 502 (764)
T ss_pred eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence 77776 88999975321 00
Q ss_pred ------------CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC---CCeEEEEeCCCCCeeeeeecC-CCeEEEEEC
Q psy8285 326 ------------KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC---DQTVRLWNSMNGKEKCHVKTD-SQVTSILWS 389 (507)
Q Consensus 326 ------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s 389 (507)
...++.+-+|...|++++.+|++ ++++++..+. -..|++|+..+....+.+..| -.|+.++||
T Consensus 503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS 581 (764)
T KOG1063|consen 503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS 581 (764)
T ss_pred CChHHHHHHhccchhhHHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC
Confidence 01122344788999999999998 5666654321 246999999999888888888 479999999
Q ss_pred CCCCeEEEEeccCCCeEEEEeCCCcc----EEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC--Ccccc--
Q psy8285 390 EQYRELVTSHGKQDCSLKMWEYPRLH----LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPR--DKKRK-- 461 (507)
Q Consensus 390 ~~~~~l~~~~g~~d~~i~v~d~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~--~~~~~-- 461 (507)
|||++|++ .+.|.++.+|...... .....+.|..-|++..|+|++.+++|+|.|..|++|..... +....
T Consensus 582 pdg~~LLs--vsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a 659 (764)
T KOG1063|consen 582 PDGRYLLS--VSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA 659 (764)
T ss_pred CCCcEEEE--eecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc
Confidence 99999999 7899999999875432 23346789999999999999999999999999999999877 33322
Q ss_pred -eeecCCCcceEEee
Q psy8285 462 -ARQVGSGSSLEFAI 475 (507)
Q Consensus 462 -~~~~~~~~~~~~~~ 475 (507)
++....++.+++.+
T Consensus 660 ~~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 660 CLKFSLAVTAVAYLP 674 (764)
T ss_pred hhccCCceeeEEeec
Confidence 33444555555544
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-28 Score=199.98 Aligned_cols=220 Identities=16% Similarity=0.222 Sum_probs=175.7
Q ss_pred eeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCC--eEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 170 GLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTT--DLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 170 ~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
+++|+.|+ +++++.|+.+++||+.+++..++.. |.++|.++.|-+... .|+++ +.|.+|+.||++...++.
T Consensus 77 ~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~----Hd~pvkt~~wv~~~~~~cl~TG-SWDKTlKfWD~R~~~pv~ 151 (347)
T KOG0647|consen 77 DVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAA----HDAPVKTCHWVPGMNYQCLVTG-SWDKTLKFWDTRSSNPVA 151 (347)
T ss_pred EEEEccCCceEEeeccCCceEEEEccCCCeeeeee----cccceeEEEEecCCCcceeEec-ccccceeecccCCCCeee
Confidence 46777776 6778899999999999998766655 999999999987664 77888 999999999999988888
Q ss_pred EEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCce-eeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q psy8285 246 KLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPT-AITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQL 323 (507)
Q Consensus 246 ~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~ 323 (507)
++. -.++++++..-..+++++..+..|.+|+++.+....+ .....+-.++|++..+|....+.|+ +|.+.+..+..+
T Consensus 152 t~~-LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 152 TLQ-LPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP 230 (347)
T ss_pred eee-ccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence 776 5677888888788999999999999999986543222 2223445689999999888889898 799999988875
Q ss_pred CCCCCeeeecCCCC---------CeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCC
Q psy8285 324 DAKRPQVNNQCHLS---------AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYR 393 (507)
Q Consensus 324 ~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~ 393 (507)
.. +.-..++.|.. .|++++|+|....++.+|+ ||++.+||-.....+...+.+ .+|++++|+.+|.
T Consensus 231 ~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs---DGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 231 NP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS---DGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGS 306 (347)
T ss_pred Cc-cCceeEEEeccCCCCCCceEEecceEeecccceEEEecC---CceEEEecchhhhhhhccCcCCCccceeEecCCCC
Confidence 33 33344555542 5788999998877777776 999999998877777765555 7899999999999
Q ss_pred eEEEEe
Q psy8285 394 ELVTSH 399 (507)
Q Consensus 394 ~l~~~~ 399 (507)
+++.+.
T Consensus 307 ifaYA~ 312 (347)
T KOG0647|consen 307 IFAYAL 312 (347)
T ss_pred EEEEEe
Confidence 999863
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-26 Score=204.54 Aligned_cols=379 Identities=13% Similarity=0.153 Sum_probs=273.6
Q ss_pred cccceeeeeecc--CcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeecC
Q psy8285 5 HLSAVKAIAWCP--WEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDRS 81 (507)
Q Consensus 5 H~~~V~~l~fsp--~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 81 (507)
-..+|+|++||+ .|.+|++.-. +.+..+.+|||..++.+...+ ....|....|.|.+..+....+-+
T Consensus 153 f~~GV~~vaFsk~~~G~~l~~vD~-s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~--------- 222 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLLCAVDD-SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKG--------- 222 (626)
T ss_pred ccccceeeeecccCCCceEEEecC-CCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCc---------
Confidence 356899999997 3555555443 378999999999999888777 467777888988877655432211
Q ss_pred CccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCCC
Q psy8285 82 SYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPS 161 (507)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (507)
.+..|.+... .+. ....++..
T Consensus 223 ----H~~Fw~~~~~----------------------------~l~-------------------------k~~~~fek-- 243 (626)
T KOG2106|consen 223 ----HLYFWTLRGG----------------------------SLV-------------------------KRQGIFEK-- 243 (626)
T ss_pred ----eEEEEEccCC----------------------------ceE-------------------------EEeecccc--
Confidence 1111111110 000 00001111
Q ss_pred cccccceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC
Q psy8285 162 IINDFYTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 162 ~~~~~~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
.+..+|.|++|.+++ ++++-++|.|.||+..+.+..+.... |++.|.+++...+|..|- + +.|..|..|| .+
T Consensus 244 -~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~a---H~ggv~~L~~lr~GtllS-G-gKDRki~~Wd-~~ 316 (626)
T KOG2106|consen 244 -REKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHA---HDGGVFSLCMLRDGTLLS-G-GKDRKIILWD-DN 316 (626)
T ss_pred -ccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeee---cCCceEEEEEecCccEee-c-CccceEEecc-cc
Confidence 112568899999998 88888999999999987776665553 999999999999986555 6 9999999999 43
Q ss_pred ceeEEE--EeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEE
Q psy8285 241 ERLIQK--LRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKI 317 (507)
Q Consensus 241 ~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i 317 (507)
-+.++. +....+++..+.-.+.-|+.|...+.|..=.+.++- .....+|......++.+|+...+++++ |+.+++
T Consensus 317 y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f--~~~v~gh~delwgla~hps~~q~~T~gqdk~v~l 394 (626)
T KOG2106|consen 317 YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF--TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRL 394 (626)
T ss_pred ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc--eEEEEecccceeeEEcCCChhheeeccCcceEEE
Confidence 343333 345667888888854448888888888777776653 456678899999999999999999998 799999
Q ss_pred EEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEE
Q psy8285 318 WDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVT 397 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (507)
|+ .. ++..+. .-..++.++.|+|.| .++.+.. .|...+.|.++...+..-....+++.+.|+|+|.+||+
T Consensus 395 W~-~~----k~~wt~-~~~d~~~~~~fhpsg--~va~Gt~--~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAv 464 (626)
T KOG2106|consen 395 WN-DH----KLEWTK-IIEDPAECADFHPSG--VVAVGTA--TGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAV 464 (626)
T ss_pred cc-CC----ceeEEE-EecCceeEeeccCcc--eEEEeec--cceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEE
Confidence 99 21 333333 256789999999998 5555553 89999999999766665555689999999999999999
Q ss_pred EeccCCCeEEEEeCCCc-cEEEEee-ccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecCCCcceEEee
Q psy8285 398 SHGKQDCSLKMWEYPRL-HLIEELK-IHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAI 475 (507)
Q Consensus 398 ~~g~~d~~i~v~d~~~~-~~~~~~~-~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 475 (507)
|+.|+.|+||-+... ....... -+..+|+.+.||+|+++|.+-+.|-.|..|....-+.... ...++|..
T Consensus 465 --gs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts------~kDvkW~t 536 (626)
T KOG2106|consen 465 --GSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITS------VKDVKWAT 536 (626)
T ss_pred --ecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccce------ecceeeee
Confidence 999999999998654 3333332 2348899999999999999999999999994333222222 55666665
Q ss_pred ccCc
Q psy8285 476 LKQP 479 (507)
Q Consensus 476 ~~~~ 479 (507)
..+.
T Consensus 537 ~~c~ 540 (626)
T KOG2106|consen 537 YTCT 540 (626)
T ss_pred eEEE
Confidence 4443
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=208.00 Aligned_cols=247 Identities=15% Similarity=0.266 Sum_probs=213.2
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE--------eecCccEEEEEe--eCCEEEEEecCCeEEEE
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL--------RTHMHQVIAMCW--NGNLLSCGTIGGNILHY 276 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~--------~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~ 276 (507)
....+.|..|+|||++|+++ +.||-|.+||..+|+..+.+ .-+..+|.|++| |..++++|+.||.|++|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsg-SvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSG-SVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred cccchhheeeCCCCceEeec-cccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 56778999999999999999 99999999999998765543 347889999999 78899999999999999
Q ss_pred ECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEE
Q psy8285 277 DVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATG 355 (507)
Q Consensus 277 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 355 (507)
.+.++....+.-..|...|+|+.|+.|+..+++++ |.++++.-+..+ ++++.+.+|...|+...|.++|.+++.++
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG---K~LKEfrGHsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG---KCLKEFRGHSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc---hhHHHhcCccccccceEEcCCCCeEEEec
Confidence 99999855555558999999999999999999999 799999999999 99999999999999999999998888777
Q ss_pred ccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECCCCC-eEEEEeccCCCeEEEEeCCCccEEEEeec---ccccee
Q psy8285 356 GGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSEQYR-ELVTSHGKQDCSLKMWEYPRLHLIEELKI---HQERIL 428 (507)
Q Consensus 356 ~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~~~~-~l~~~~g~~d~~i~v~d~~~~~~~~~~~~---~~~~i~ 428 (507)
+ ||+|++|+.++.+++.+++.. .+|.++..-|.+. .+++ +...++|+|.++. |+.+.++.. ..+...
T Consensus 368 s---DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV--CNrsntv~imn~q-GQvVrsfsSGkREgGdFi 441 (508)
T KOG0275|consen 368 S---DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV--CNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFI 441 (508)
T ss_pred C---CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE--EcCCCeEEEEecc-ceEEeeeccCCccCCceE
Confidence 6 999999999999999988764 4688888877654 4555 5678899999974 667777753 234566
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEecCCCCccccee
Q psy8285 429 SAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 429 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 463 (507)
+...||.|.++++.+.|+.++.|.+.+++....+.
T Consensus 442 ~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~ 476 (508)
T KOG0275|consen 442 NAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP 476 (508)
T ss_pred EEEecCCCcEEEEEccCcEEEEEEeecCceeeeee
Confidence 77889999999999999999999999998877654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=218.64 Aligned_cols=245 Identities=13% Similarity=0.239 Sum_probs=188.0
Q ss_pred ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE-------------EEEeecCccEEEEEe---eCCEEEEEecCCeE
Q psy8285 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI-------------QKLRTHMHQVIAMCW---NGNLLSCGTIGGNI 273 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~-------------~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i 273 (507)
.|.....++++..++++ +.+.....|+...+..+ ..+.+|.+.|.+++| ++++|++++.|++|
T Consensus 22 ~i~~~~~~~d~~~~~~~-n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 22 NVTPSTALWDCSNTIAC-NDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred ccccccccCCCCCcEeE-CCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 34444555565556655 55665666664433221 246789999999999 46799999999999
Q ss_pred EEEECCCCC------cCceeeecCCCceEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEc
Q psy8285 274 LHYDVRTHS------DYPTAITREGDVVCGLKWSPNG-RYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWC 345 (507)
Q Consensus 274 ~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 345 (507)
++||+.... .+...+.+|...|.+++|+|++ ++|++++ |+.|++||++++ +.+..+..|...|.+++|+
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg---~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG---KAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC---eEEEEEcCCCCceEEEEEE
Confidence 999997643 2355678899999999999985 6888888 799999999987 6777888899999999999
Q ss_pred cCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC--CeEEEEECCCCCeEEEEe--ccCCCeEEEEeCCCcc-EEEEe
Q psy8285 346 PWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS--QVTSILWSEQYRELVTSH--GKQDCSLKMWEYPRLH-LIEEL 420 (507)
Q Consensus 346 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~--g~~d~~i~v~d~~~~~-~~~~~ 420 (507)
|++. ++++++. |+.|++||+++++.+..+..+. ....+.|.+++..++++. ++.|+.|++||+++.. ++...
T Consensus 178 pdG~-lLatgs~--Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~ 254 (493)
T PTZ00421 178 LDGS-LLCTTSK--DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV 254 (493)
T ss_pred CCCC-EEEEecC--CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe
Confidence 9985 5555554 9999999999999888887663 356788999988887742 1358999999998754 34333
Q ss_pred ecc-ccceeEEEECCCCCEEEEEe-CCCcEEEEecCCCCcccc
Q psy8285 421 KIH-QERILSAVLSPDQTCVAAAS-ADETISIWNCFPRDKKRK 461 (507)
Q Consensus 421 ~~~-~~~i~~~~~s~~~~~l~s~~-~dg~i~iw~~~~~~~~~~ 461 (507)
..+ ...+....|++++++|++++ .|+.|++||+.+++....
T Consensus 255 ~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 255 DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 323 34566678999999998887 599999999998876544
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=224.46 Aligned_cols=228 Identities=21% Similarity=0.365 Sum_probs=195.2
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAM 257 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 257 (507)
+++++.|.++++||..+|+....+. + |...|.++...+ .+++.+ +.|.+|++|+++++..+..+.+|..+|.++
T Consensus 264 lvsgS~D~t~rvWd~~sg~C~~~l~--g-h~stv~~~~~~~--~~~~sg-s~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 264 LVSGSTDKTERVWDCSTGECTHSLQ--G-HTSSVRCLTIDP--FLLVSG-SRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred EEEEecCCcEEeEecCCCcEEEEec--C-CCceEEEEEccC--ceEeec-cCCceEEEEeccCcceEEEeccccccEEEE
Confidence 7888899999999999999877766 4 999999998753 355555 999999999999999999999999999999
Q ss_pred EeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCC
Q psy8285 258 CWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHL 336 (507)
Q Consensus 258 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~ 336 (507)
..++.++++|+.|+.|.+||+.+.+ +...+.+|...|+++.+.+. ..+++|+ |+.|++||+++.. +++.++.+|.
T Consensus 338 ~~~~~~lvsgs~d~~v~VW~~~~~~-cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~ 413 (537)
T KOG0274|consen 338 QLDEPLLVSGSYDGTVKVWDPRTGK-CLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHT 413 (537)
T ss_pred EecCCEEEEEecCceEEEEEhhhce-eeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCc
Confidence 9999999999999999999999876 78899999999999988765 7899998 8999999999853 6888899999
Q ss_pred CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec-C-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc
Q psy8285 337 SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT-D-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 337 ~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~ 414 (507)
.-+..+.+. + .++++++. |++|++||..++++++.+.. + ..+..+++. ...+++ ++.|+.+++||++++
T Consensus 414 ~~v~~l~~~--~-~~Lvs~~a--D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~--s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 414 SLVSSLLLR--D-NFLVSSSA--DGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILC--SSDDGSVKLWDLRSG 484 (537)
T ss_pred ccccccccc--c-ceeEeccc--cccEEEeecccCceeeeeccCCcccEEEeecC--cceEEE--EecCCeeEEEecccC
Confidence 988777764 3 45555543 99999999999999999988 4 678888876 455666 678999999999999
Q ss_pred cEEEEeeccc
Q psy8285 415 HLIEELKIHQ 424 (507)
Q Consensus 415 ~~~~~~~~~~ 424 (507)
+....+-.+.
T Consensus 485 ~~~~~l~~~~ 494 (537)
T KOG0274|consen 485 TLIRTLLSTD 494 (537)
T ss_pred chhhhhhhcc
Confidence 9888764443
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=228.81 Aligned_cols=288 Identities=18% Similarity=0.327 Sum_probs=228.2
Q ss_pred cccceeeeeeCCCC--EEEEE--cCCeEEEEECCCC----------ceeEEEecCCCCCCceEEEEEccCCCeEEEEeCC
Q psy8285 164 NDFYTSGLDWGYHD--TLAVA--LDTSVYTWNTKTN----------KTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTC 229 (507)
Q Consensus 164 ~~~~i~~~~~s~~~--~~~~~--~~~~i~iw~~~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 229 (507)
++..|-+++.+|++ +.+++ .|+.+.||+.+.- -...+.+... |.+.|.|+.|+|||++||+| +.
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~-h~~sv~CVR~S~dG~~lAsG-SD 89 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDD-HDGSVNCVRFSPDGSYLASG-SD 89 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecc-ccCceeEEEECCCCCeEeec-cC
Confidence 34457789999998 55556 7888889987531 1223444555 99999999999999999999 99
Q ss_pred CCcEEEEeCCC------------------ceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeee
Q psy8285 230 TEYIDLWHEQE------------------ERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAIT 289 (507)
Q Consensus 230 dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 289 (507)
|+.|.||+... .+....+.+|...|.+++| ++.+|++++.|++|.+|+..+. .....+.
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~ 168 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLR 168 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeee
Confidence 99999998762 1356778899999999999 6999999999999999999999 5888999
Q ss_pred cCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecC------CCCCeeEEEEccCCCcEEEEEccCC--C
Q psy8285 290 REGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQC------HLSAVKAIAWCPWEPTLLATGGGIC--D 360 (507)
Q Consensus 290 ~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~--d 360 (507)
+|...|-.+.|.|-|++||+-+ |++|++|++.+- ...+.+.+ -......+.|||||.++.+..+ .. -
T Consensus 169 ~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw---~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA-~n~~~ 244 (942)
T KOG0973|consen 169 GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDW---GIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA-VNGGK 244 (942)
T ss_pred cccccccceEECCccCeeeeecCCceEEEEEcccc---eeeEeeccchhhCCCcceeeecccCCCcCeecchhh-ccCCc
Confidence 9999999999999999999998 599999997764 23333322 2345789999999966554432 11 3
Q ss_pred CeEEEEeCCCCCeeeeeecC-CCeEEEEECCC------C---------CeEEEEeccCCCeEEEEeCCCccEEEEeec-c
Q psy8285 361 QTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQ------Y---------RELVTSHGKQDCSLKMWEYPRLHLIEELKI-H 423 (507)
Q Consensus 361 ~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~------~---------~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~-~ 423 (507)
..+.|.+-.+.+.-..+-+| .++.++.|+|. . .|.++++|+.|++|.||.....+++..... .
T Consensus 245 ~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf 324 (942)
T KOG0973|consen 245 STIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF 324 (942)
T ss_pred ceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh
Confidence 46888887777766666666 78999999982 1 222333399999999999988887765532 3
Q ss_pred ccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 424 QERILSAVLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 424 ~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
...|.+++|+|||..|+.+|.||+|.+..++..+.
T Consensus 325 ~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 325 NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred cCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 56799999999999999999999999999986543
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=207.76 Aligned_cols=245 Identities=22% Similarity=0.418 Sum_probs=205.5
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce----------eEEEEeecCccEEEEEe---eCCEEEEEecCCeE
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER----------LIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNI 273 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i 273 (507)
|.+.|..+...|+...++++.+..+.+.|||..... +-..+.+|...-.+++| ....|++++.|+.|
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i 202 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI 202 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence 899999999999998888876889999999986532 12267889988888999 36689999999999
Q ss_pred EEEECCCCCc------CceeeecCCCceEEEEEcCCC-CEEEEEeC-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEc
Q psy8285 274 LHYDVRTHSD------YPTAITREGDVVCGLKWSPNG-RYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWC 345 (507)
Q Consensus 274 ~i~d~~~~~~------~~~~~~~~~~~v~~~~~~~~~-~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 345 (507)
.+||+..... +...+.+|...|..++|++-. .++++++| +.+.|||+|+. ..++.....+|.+++.|++|+
T Consensus 203 ~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 203 CLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeC
Confidence 9999986543 356778999999999999954 56677775 99999999964 447778888999999999999
Q ss_pred cCCCcEEEEEccCCCCeEEEEeCCCC-CeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc---------
Q psy8285 346 PWEPTLLATGGGICDQTVRLWNSMNG-KEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL--------- 414 (507)
Q Consensus 346 ~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~--------- 414 (507)
|.+..+|++++. |++|.+||+|+. ++++.+..+ ..|.++.|+|...-++++ .+.|+.+.|||+..-
T Consensus 282 p~~~~ilAT~S~--D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLAS-Sg~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 282 PFNEFILATGSA--DKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLAS-SGTDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred CCCCceEEeccC--CCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEe-cccCCcEEEEeccccccccChhhh
Confidence 999999999986 999999999986 466777777 789999999998887776 468999999998542
Q ss_pred -----cEEEEeeccccceeEEEECCCCC-EEEEEeCCCcEEEEecCC
Q psy8285 415 -----HLIEELKIHQERILSAVLSPDQT-CVAAASADETISIWNCFP 455 (507)
Q Consensus 415 -----~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~dg~i~iw~~~~ 455 (507)
+++..-.||...|..+.|+|... .|++++.|+.+.||+...
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 23456678999999999999765 567889999999999873
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-28 Score=199.88 Aligned_cols=209 Identities=16% Similarity=0.364 Sum_probs=174.4
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC------------------ceeEEEEeecCccEEEEEe--eCCEEEE
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE------------------ERLIQKLRTHMHQVIAMCW--NGNLLSC 266 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~--~~~~l~~ 266 (507)
|..++.+.+|+|||.+++++ +.|..|+|.|++. ...++++..|..+|.++.| ....|++
T Consensus 111 HK~~cR~aafs~DG~lvATG-saD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATG-SADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred cccceeeeeeCCCCcEEEcc-CCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 99999999999999999999 9999999999861 1246778889999999999 5789999
Q ss_pred EecCCeEEEEECCCCCcC-ceeeecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEE
Q psy8285 267 GTIGGNILHYDVRTHSDY-PTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAW 344 (507)
Q Consensus 267 ~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 344 (507)
++.|++|++||+...... .........+|.++.|+|.|.+|++|.| ..+++||+++.+..-....-..|.+.|+++.+
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY 269 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEe
Confidence 999999999999864311 1112234568999999999999999998 99999999987332233334568999999999
Q ss_pred ccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec---CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee
Q psy8285 345 CPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT---DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK 421 (507)
Q Consensus 345 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~ 421 (507)
++.+ .+.++++. ||.|++||--+++++.++.. ...|++..|..+++|+++ .+.|..+++|.+.+++++.++.
T Consensus 270 s~t~-~lYvTaSk--DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs--SG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 270 SSTG-SLYVTASK--DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS--SGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred cCCc-cEEEEecc--CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEee--cCCcceeeeeeecCCceEEEEe
Confidence 9988 67777765 99999999999999988753 268999999999999999 7789999999998888776553
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-27 Score=219.09 Aligned_cols=381 Identities=16% Similarity=0.175 Sum_probs=252.5
Q ss_pred cc-cceeeeeeccCcceeeeccccccccceeeecccCCcceeeee--cCcccceeeccccccccccCCccCCceeEeecC
Q psy8285 5 HL-SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK--TDSQVTSILWSEQYRESSRSKMVNTDRYVVDRS 81 (507)
Q Consensus 5 H~-~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~--~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 81 (507)
|. +.|++++|.-||+.+||+|. .-|.+.+||++..+++.... |.+.|..+.|-+....+++....+. ..+++..
T Consensus 242 ~d~g~VtslSFrtDG~p~las~~--~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnS-lk~~vfD 318 (910)
T KOG1539|consen 242 QDWGRVTSLSFRTDGNPLLASGR--SNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNS-LKVWVFD 318 (910)
T ss_pred ccccceeEEEeccCCCeeEEecc--CCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCc-eeEEEee
Confidence 53 89999999999999999998 78999999999999887776 6788999988877766665443322 1111111
Q ss_pred CccccccccccccccccCchhHHHHHHhhhhhhcccccc----cccceeEecCCC---CCcccccccCCCCCccccCCch
Q psy8285 82 SYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEI----DRKKVLNQSKRT---VSPTQFLRTLGKLPRKVKAKPE 154 (507)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 154 (507)
..|..-+......++...-++-..| . ..|+.+ .+...+.|.-.. ....+..-......+.....+.
T Consensus 319 ~~dg~pR~LR~R~GHs~Pp~~irfy-~------~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~ 391 (910)
T KOG1539|consen 319 SGDGVPRLLRSRGGHSAPPSCIRFY-G------SQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTE 391 (910)
T ss_pred CCCCcchheeeccCCCCCchheeee-c------cCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchh
Confidence 2222111111111100000000000 0 000000 000000111000 0000000000000000000011
Q ss_pred hhhcCCCcccccceeeeeeCC------CCEEEEE-cCCeEEEEECCCCce-eEEEe---cCCCCCCceEEEEEccCCCeE
Q psy8285 155 RILEAPSIINDFYTSGLDWGY------HDTLAVA-LDTSVYTWNTKTNKT-QLLVE---YPTYDNAYISCVAWKPRTTDL 223 (507)
Q Consensus 155 ~~~~~~~~~~~~~i~~~~~s~------~~~~~~~-~~~~i~iw~~~~~~~-~~~~~---~~~~~~~~v~~~~~~~~~~~l 223 (507)
. +..| .|..+++.. ++++++. .+...+.|+..+... ...+. +.. ....+++++.++.|++.
T Consensus 392 ~-~k~p------~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~-~~~~~~av~vs~CGNF~ 463 (910)
T KOG1539|consen 392 K-LKLP------PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKK-DDINATAVCVSFCGNFV 463 (910)
T ss_pred h-hcCC------cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccc-cCcceEEEEEeccCceE
Confidence 1 1111 133344333 3566665 678999999987543 11221 111 34679999999999999
Q ss_pred EEEeCCCCcEEEEeCCCceeEEEE---eecCccEEEEEee--CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEE
Q psy8285 224 AVTNTCTEYIDLWHEQEERLIQKL---RTHMHQVIAMCWN--GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGL 298 (507)
Q Consensus 224 ~~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 298 (507)
+.| +..|.|.+|++++|-....+ +.|..+|+.++.| ++.+++++.+|.+..||..+.. ....+ .-...+.++
T Consensus 464 ~IG-~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l~~~l-~l~~~~~~i 540 (910)
T KOG1539|consen 464 FIG-YSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV-LKKSL-RLGSSITGI 540 (910)
T ss_pred EEe-ccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc-eeeee-ccCCCccee
Confidence 998 99999999999999888887 4799999999996 6679999999999999998765 23222 345567788
Q ss_pred EEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeee
Q psy8285 299 KWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHV 377 (507)
Q Consensus 299 ~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 377 (507)
.++.....++.+.| -.|.++|..+. +.++.+.+|.+.|++++|||||+.+++++- |++|++||+.++.++-.+
T Consensus 541 v~hr~s~l~a~~~ddf~I~vvD~~t~---kvvR~f~gh~nritd~~FS~DgrWlisasm---D~tIr~wDlpt~~lID~~ 614 (910)
T KOG1539|consen 541 VYHRVSDLLAIALDDFSIRVVDVVTR---KVVREFWGHGNRITDMTFSPDGRWLISASM---DSTIRTWDLPTGTLIDGL 614 (910)
T ss_pred eeeehhhhhhhhcCceeEEEEEchhh---hhhHHhhccccceeeeEeCCCCcEEEEeec---CCcEEEEeccCcceeeeE
Confidence 88888888888885 99999999987 888899999999999999999977776553 999999999999999999
Q ss_pred ecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 378 KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 378 ~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
....+++++.|+|+|.+||+++ ....-|++|--.+
T Consensus 615 ~vd~~~~sls~SPngD~LAT~H-vd~~gIylWsNks 649 (910)
T KOG1539|consen 615 LVDSPCTSLSFSPNGDFLATVH-VDQNGIYLWSNKS 649 (910)
T ss_pred ecCCcceeeEECCCCCEEEEEE-ecCceEEEEEchh
Confidence 9999999999999999999964 2236799997544
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-27 Score=194.45 Aligned_cols=262 Identities=18% Similarity=0.266 Sum_probs=209.7
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCc
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYP 285 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~ 285 (507)
....|+++.|+|.+..|+++ +.||++++||.........+ .|..++.+++| +...+++|+.||.|+.+|+.++. .
T Consensus 12 P~d~IS~v~f~~~~~~LLvs-sWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~--~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVS-SWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGN--E 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEE-eccCcEEEEeccchhhhhhe-ecCCceeeeeccCCceEEEeccCceEEEEEecCCc--c
Confidence 57889999999999999999 89999999999887555444 49999999999 88899999999999999999876 5
Q ss_pred eeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEE
Q psy8285 286 TAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVR 364 (507)
Q Consensus 286 ~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~ 364 (507)
..+..|..++.|+.+++....+++|+ |++|++||.+.. .....+. ....|.++..+ +..|++.+. +..+.
T Consensus 88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~---~~~~~~d-~~kkVy~~~v~--g~~LvVg~~---~r~v~ 158 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK---VVVGTFD-QGKKVYCMDVS--GNRLVVGTS---DRKVL 158 (323)
T ss_pred eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc---ccccccc-cCceEEEEecc--CCEEEEeec---CceEE
Confidence 67788999999999999888899999 999999999974 4444444 44589998876 335665454 99999
Q ss_pred EEeCCCCCeeeeee---cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc----cEEEEeeccc---------ccee
Q psy8285 365 LWNSMNGKEKCHVK---TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL----HLIEELKIHQ---------ERIL 428 (507)
Q Consensus 365 i~d~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~----~~~~~~~~~~---------~~i~ 428 (507)
+||+++........ ....+.++++-|++.-.++ ++-||.|.+=.+... +....++.|. .+|+
T Consensus 159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~--sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVN 236 (323)
T KOG1036|consen 159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV--SSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVN 236 (323)
T ss_pred EEEcccccchhhhccccceeEEEEEEEecCCCceEE--EeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEec
Confidence 99999876544322 2357899999998888888 788999888666544 3444566564 3799
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeec-CCCcceEEeeccCccccc
Q psy8285 429 SAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQV-GSGSSLEFAILKQPVSLT 483 (507)
Q Consensus 429 ~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 483 (507)
+++|+|-...|+||+.||.|.+||+.+.+.+..+... ..+.++.|..+...++..
T Consensus 237 ai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 237 AIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred eeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence 9999999999999999999999999999988877654 335566666555544443
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=194.96 Aligned_cols=281 Identities=19% Similarity=0.266 Sum_probs=237.7
Q ss_pred EecCCCCCCceEEEEEcc---CCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEee--CCEEEEEecCCeEEE
Q psy8285 201 VEYPTYDNAYISCVAWKP---RTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCGTIGGNILH 275 (507)
Q Consensus 201 ~~~~~~~~~~v~~~~~~~---~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i 275 (507)
....| |..+|..++|+| +|-+|+++ +.||.-.+-+-.+|.-+.++.+|.+.|+..+.| ...-+++..|-+-++
T Consensus 8 l~c~g-htrpvvdl~~s~itp~g~flisa-~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 8 LTCHG-HTRPVVDLAFSPITPDGYFLISA-SKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred eEEcC-CCcceeEEeccCCCCCceEEEEe-ccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 34556 999999999985 67677777 999999999999999999999999999999994 456778888999999
Q ss_pred EECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEE
Q psy8285 276 YDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLAT 354 (507)
Q Consensus 276 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 354 (507)
||.-++.. .. ...|+..|..++|+.|.++|++|+ +.-+++||++.. ..+...+.+|.+.|..+.|....+.++.+
T Consensus 86 w~a~tgde-lh-sf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p--~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 86 WDAVTGDE-LH-SFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP--KAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhh-hh-hhhhhheeeeEEecccchhhhccchHHHhhhhhccCC--CCCchhhcCCCCcceeEEEeccCceEEee
Confidence 99988863 32 335888999999999999999999 599999999876 35677888999999999999888777776
Q ss_pred EccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECC
Q psy8285 355 GGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSP 434 (507)
Q Consensus 355 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~ 434 (507)
+. |++||+||.++++.++.+..+..++++.++++|++|.++ ..+.|.+||..+..+++.++. ...|.+...+|
T Consensus 162 ad---d~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia---~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P 234 (334)
T KOG0278|consen 162 AD---DKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA---YGSSVKFWDAKSFGLLKSYKM-PCNVESASLHP 234 (334)
T ss_pred cc---CCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe---cCceeEEeccccccceeeccC-ccccccccccC
Confidence 54 999999999999999999999999999999999999884 356899999999999988874 56799999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCcccce--eecCCCcceEEeeccCccccceeeeecccccccceeEEe
Q psy8285 435 DQTCVAAASADETISIWNCFPRDKKRKA--RQVGSGSSLEFAILKQPVSLTALLRSRAVEKQQHAIAYT 501 (507)
Q Consensus 435 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 501 (507)
+...+++|+.|..++.||+.+++.+... .+.+++.++.|+|+... .+...++..+.|.-+
T Consensus 235 ~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~-------yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 235 KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGEL-------YASGSEDGTIRLWQT 296 (334)
T ss_pred CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCce-------eeccCCCceEEEEEe
Confidence 9999999999999999999999988763 45667777888776654 455555555555433
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=206.50 Aligned_cols=265 Identities=15% Similarity=0.283 Sum_probs=221.9
Q ss_pred ecCCCCCCceEEEEEccCC-CeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCC
Q psy8285 202 EYPTYDNAYISCVAWKPRT-TDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRT 280 (507)
Q Consensus 202 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~ 280 (507)
.+.| |.+.|.|++=+|.. ..++++ +.||.|+|||+.+.+++..+..|.+.|..++++...+++++.|.+|+.|.+..
T Consensus 61 ~L~g-HrdGV~~lakhp~~ls~~aSG-s~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 61 SLDG-HRDGVSCLAKHPNKLSTVASG-SCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred hccc-cccccchhhcCcchhhhhhcc-ccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC
Confidence 3455 99999999999988 566677 99999999999999999999999999999999888999999999999999886
Q ss_pred CCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC
Q psy8285 281 HSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD 360 (507)
Q Consensus 281 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d 360 (507)
. +...+. ....+..+.-+..+..+++++ ..|.|||.+.. .++..+.-....+.++.|+|-...+|++++. |
T Consensus 139 ~--p~~til-g~s~~~gIdh~~~~~~FaTcG-e~i~IWD~~R~---~Pv~smswG~Dti~svkfNpvETsILas~~s--D 209 (433)
T KOG0268|consen 139 P--PLHTIL-GKSVYLGIDHHRKNSVFATCG-EQIDIWDEQRD---NPVSSMSWGADSISSVKFNPVETSILASCAS--D 209 (433)
T ss_pred C--cceeee-ccccccccccccccccccccC-ceeeecccccC---CccceeecCCCceeEEecCCCcchheeeecc--C
Confidence 3 333333 345566777776677777776 57999999876 7888888788889999999999899998865 9
Q ss_pred CeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc-cEEEEeeccccceeEEEECCCCCEE
Q psy8285 361 QTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL-HLIEELKIHQERILSAVLSPDQTCV 439 (507)
Q Consensus 361 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l 439 (507)
+.|.+||++.+.+++.+.....-+.++|+|.+-.+.+ +++|..++.||++.. +++....+|.+.|.++.|||.|+-+
T Consensus 210 rsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~--a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVA--ANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred CceEEEecccCCccceeeeeccccceecCccccceee--ccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence 9999999999999999888888899999995555555 899999999999875 6777889999999999999999999
Q ss_pred EEEeCCCcEEEEecCCCCcccc--eeecCCCcceEEeeccCc
Q psy8285 440 AAASADETISIWNCFPRDKKRK--ARQVGSGSSLEFAILKQP 479 (507)
Q Consensus 440 ~s~~~dg~i~iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 479 (507)
++||.|.+|+||.+..+..... .+.-..+.++.|+.++..
T Consensus 288 vsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsky 329 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKY 329 (433)
T ss_pred ccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccE
Confidence 9999999999999987655433 233345666777666543
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-27 Score=193.37 Aligned_cols=265 Identities=18% Similarity=0.288 Sum_probs=204.4
Q ss_pred EEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-eeE-EEEeecCccEEEEEe--eCCEEEEEecCCeEEE
Q psy8285 200 LVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE-RLI-QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILH 275 (507)
Q Consensus 200 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~-~~~-~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i 275 (507)
.+.++...++.|.+++|||....++++++.||+||+|+++.. ..+ +....|.++|.+++| +|..+++|+.|+.+++
T Consensus 19 d~ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 19 DYEVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL 98 (347)
T ss_pred ceecCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEE
Confidence 344444378899999999976666655599999999999873 333 334569999999999 7999999999999999
Q ss_pred EECCCCCcCceeeecCCCceEEEEEcCCCC--EEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEE
Q psy8285 276 YDVRTHSDYPTAITREGDVVCGLKWSPNGR--YLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLL 352 (507)
Q Consensus 276 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 352 (507)
||+.+++ ...+..|..+|..+.|-+... .|++|+ |.+|+.||++.. .++.++. -..+++++..-. -++
T Consensus 99 wDL~S~Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~---~pv~t~~-LPeRvYa~Dv~~---pm~ 169 (347)
T KOG0647|consen 99 WDLASGQ--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS---NPVATLQ-LPERVYAADVLY---PMA 169 (347)
T ss_pred EEccCCC--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC---Ceeeeee-ccceeeehhccC---cee
Confidence 9999985 677888999999999988665 799999 999999999987 6777665 566788777643 244
Q ss_pred EEEccCCCCeEEEEeCCCCCeee-eeecC--CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc--cEEEEeeccc---
Q psy8285 353 ATGGGICDQTVRLWNSMNGKEKC-HVKTD--SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL--HLIEELKIHQ--- 424 (507)
Q Consensus 353 ~~~~~~~d~~i~i~d~~~~~~~~-~~~~~--~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~--~~~~~~~~~~--- 424 (507)
+++.+ ++.|.+|+++++.... .+... -.+.+++..+|....+. |+-+|.+.|..+..+ +.-..++-|.
T Consensus 170 vVata--~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al--GsiEGrv~iq~id~~~~~~nFtFkCHR~~~ 245 (347)
T KOG0647|consen 170 VVATA--ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL--GSIEGRVAIQYIDDPNPKDNFTFKCHRSTN 245 (347)
T ss_pred EEEec--CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe--eeecceEEEEecCCCCccCceeEEEeccCC
Confidence 44444 9999999998765433 22222 46899999999888888 899999999998876 4444555565
Q ss_pred ------cceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccce-eecCCCcceEEeecc
Q psy8285 425 ------ERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKA-RQVGSGSSLEFAILK 477 (507)
Q Consensus 425 ------~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~ 477 (507)
..|++++|+|.-..|+|++.||++.+||-....++... ....++....|....
T Consensus 246 ~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G 305 (347)
T KOG0647|consen 246 SVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNG 305 (347)
T ss_pred CCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCC
Confidence 25788999999999999999999999998877666653 333444444444433
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-25 Score=205.02 Aligned_cols=280 Identities=12% Similarity=0.081 Sum_probs=207.5
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAM 257 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 257 (507)
+++.+.|+.|++||+.+++....+.. + ..+.+++|+|+++.+++++..++.|++||..+++....+..+.. +..+
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~---~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~ 78 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPV---G-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELF 78 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEEC---C-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEE
Confidence 45667899999999998887666553 3 34678999999998765547899999999999888777665443 3556
Q ss_pred Ee--eCCEEEE-EecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCCCeeee
Q psy8285 258 CW--NGNLLSC-GTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-N-NTVKIWDFRQLDAKRPQVNN 332 (507)
Q Consensus 258 ~~--~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~ 332 (507)
.| +++.+++ +..++.+++||+.+.+ ....+. +...+.+++|+|++++++++. + ..+.+||.+++ +.....
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~~~-~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~---~~~~~~ 153 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIETRK-VLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY---EIVDNV 153 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCe-EEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC---eEEEEE
Confidence 66 5666654 4568999999998754 233332 234467899999999999888 4 46778898765 333333
Q ss_pred cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC--------CCeEEEEECCCCCeEEEEeccCCC
Q psy8285 333 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD--------SQVTSILWSEQYRELVTSHGKQDC 404 (507)
Q Consensus 333 ~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--------~~i~~~~~s~~~~~l~~~~g~~d~ 404 (507)
. ....+..+.|+|++..+++++.. ++.|++||+.+++.+..+... .....++|+|++++++++ ...++
T Consensus 154 ~-~~~~~~~~~~s~dg~~l~~~~~~--~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~-~~~~~ 229 (300)
T TIGR03866 154 L-VDQRPRFAEFTADGKELWVSSEI--GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA-LGPAN 229 (300)
T ss_pred E-cCCCccEEEECCCCCEEEEEcCC--CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE-cCCCC
Confidence 2 23456789999999777666543 899999999999877665422 124578899999987664 34567
Q ss_pred eEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEE-eCCCcEEEEecCCCCcccceeecCCCcceE
Q psy8285 405 SLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAA-SADETISIWNCFPRDKKRKARQVGSGSSLE 472 (507)
Q Consensus 405 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 472 (507)
.+.+||+.+++.+..+. +...+.+++|+|+|++|+++ +.++.|++||+.+++.+..++.......+.
T Consensus 230 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 297 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVV 297 (300)
T ss_pred eEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeE
Confidence 89999999888776654 44578999999999999876 468999999999998887766544444443
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=197.86 Aligned_cols=237 Identities=16% Similarity=0.235 Sum_probs=189.1
Q ss_pred ceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 167 YTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.|+.++|+|.. +++++.|++|+++|.......+-+..-. ...+|.++.|+|.|.+|+++ .....+++||+++.++.
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvg-TdHp~~rlYdv~T~Qcf 251 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVG-TDHPTLRLYDVNTYQCF 251 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEe-cCCCceeEEeccceeEe
Confidence 37789999976 5566799999999998755443333222 56789999999999999999 89999999999998876
Q ss_pred EEE---eecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCC-CceEEEEEcCCCCEEEEEe-CCcEEE
Q psy8285 245 QKL---RTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREG-DVVCGLKWSPNGRYLASGS-NNTVKI 317 (507)
Q Consensus 245 ~~~---~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-d~~i~i 317 (507)
... .+|.+.|+++.+ .+++.++++.||.|++||--+.+.....-..|. ..|++..|..+++++++.+ |..+++
T Consensus 252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkL 331 (430)
T KOG0640|consen 252 VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKL 331 (430)
T ss_pred eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeee
Confidence 544 358999999999 689999999999999999877764444444554 5799999999999999988 899999
Q ss_pred EEcCCCCCCCCeeeecCCC-----CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeee--ecCCCeEEEEECC
Q psy8285 318 WDFRQLDAKRPQVNNQCHL-----SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHV--KTDSQVTSILWSE 390 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~--~~~~~i~~~~~s~ 390 (507)
|.+.++ +++....+-. .--+...|+....+++.-... .+.+.-||.++...+..+ .+.+.+..+.-||
T Consensus 332 WEi~t~---R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEa--s~slcsWdaRtadr~~l~slgHn~a~R~i~HSP 406 (430)
T KOG0640|consen 332 WEISTG---RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEA--SNSLCSWDARTADRVALLSLGHNGAVRWIVHSP 406 (430)
T ss_pred eeecCC---ceEEEEecCCcccchhhhhhhhhcCccceEEccccc--cCceeeccccchhhhhhcccCCCCCceEEEeCC
Confidence 999998 7887776531 123455677666666665543 678999999998765544 4558899999999
Q ss_pred CCCeEEEEeccCCCeEEEEeCC
Q psy8285 391 QYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 391 ~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
.+.-+++ ++.|-.+++|--+
T Consensus 407 ~~p~FmT--csdD~raRFWyrr 426 (430)
T KOG0640|consen 407 VEPAFMT--CSDDFRARFWYRR 426 (430)
T ss_pred CCCceee--ecccceeeeeeec
Confidence 9999999 8899999999743
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.4e-27 Score=195.59 Aligned_cols=293 Identities=17% Similarity=0.200 Sum_probs=199.6
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCC-----cceeeeecCcccceeeccccccccccCCccCCcee
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG-----KEKCHVKTDSQVTSILWSEQYRESSRSKMVNTDRY 76 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g-----~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~ 76 (507)
|+||.+.|++|+||.||++ |||++ .|++||||++... ++++.-......+.+.|+||.+..+.++..+.
T Consensus 82 LKgH~~~vt~~~FsSdGK~-lat~~--~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~--- 155 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKK-LATIS--GDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGN--- 155 (420)
T ss_pred hhccCCceeeeEEcCCCce-eEEEe--CCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCC---
Confidence 7899999999999999999 99998 7999999999764 23332223456788899999887665543221
Q ss_pred EeecCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhh
Q psy8285 77 VVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERI 156 (507)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (507)
.+..|.+.+..++..+ .+..+
T Consensus 156 ---------~l~vyk~~K~~dG~~~-----------------------------------------------~~~v~--- 176 (420)
T KOG2096|consen 156 ---------KLCVYKLVKKTDGSGS-----------------------------------------------HHFVH--- 176 (420)
T ss_pred ---------EEEEEEeeecccCCCC-----------------------------------------------ccccc---
Confidence 2223333332111000 00000
Q ss_pred hcCCCccccc--ceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCc
Q psy8285 157 LEAPSIINDF--YTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEY 232 (507)
Q Consensus 157 ~~~~~~~~~~--~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~ 232 (507)
.+...++..- .+..+-...++ +++++.|..|.+|++. |+....+.. ....-+..+.+|+|++++++ +..-.
T Consensus 177 ~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt---nq~~n~~aavSP~GRFia~~-gFTpD 251 (420)
T KOG2096|consen 177 IDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT---NQSSNYDAAVSPDGRFIAVS-GFTPD 251 (420)
T ss_pred ccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc---ccccccceeeCCCCcEEEEe-cCCCC
Confidence 0000111111 11112222233 6677899999999998 776655554 45566788999999999999 88899
Q ss_pred EEEEeCCC---c-----eeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc----C--c----eeeecCC
Q psy8285 233 IDLWHEQE---E-----RLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD----Y--P----TAITREG 292 (507)
Q Consensus 233 i~iwd~~~---~-----~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~----~--~----~~~~~~~ 292 (507)
|++|.+-- | ..+..+++|...|..++| +...+++.+.||.+++||.+-.-. + . ..+....
T Consensus 252 VkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag 331 (420)
T KOG2096|consen 252 VKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAG 331 (420)
T ss_pred ceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcC
Confidence 99998632 2 234578899999999999 578999999999999999864210 1 1 1111223
Q ss_pred CceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC
Q psy8285 293 DVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN 370 (507)
Q Consensus 293 ~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 370 (507)
+.-..++++|+|+.||.+....+++|..+.++....... .|...|.+++|+++|+ .+++++ |+.++++.-..
T Consensus 332 ~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~--~h~~~Is~is~~~~g~-~~atcG---dr~vrv~~ntp 403 (420)
T KOG2096|consen 332 SEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELED--IHSTTISSISYSSDGK-YIATCG---DRYVRVIRNTP 403 (420)
T ss_pred CCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHH--hhcCceeeEEecCCCc-EEeeec---ceeeeeecCCC
Confidence 334479999999999999889999999998743333333 3889999999999995 555565 89999987433
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=208.97 Aligned_cols=259 Identities=21% Similarity=0.305 Sum_probs=219.5
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce--eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER--LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHS 282 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~ 282 (507)
|.+.+..+.|-++...|+++ +.|..|++|+....+ .+.++.+..++|+++.| +++++++++.|+.+++|++...+
T Consensus 174 h~gev~~v~~l~~sdtlatg-g~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r 252 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATG-GSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR 252 (459)
T ss_pred cccccceeEEccCcchhhhc-chhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh
Confidence 88999999999998999999 999999999988766 67788888999999999 68899999999999999999876
Q ss_pred cCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC
Q psy8285 283 DYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ 361 (507)
Q Consensus 283 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~ 361 (507)
....+.+|.+.|+++.|......+++|+ |.+|++||+... .+..+.. ....+..|..++ ..++++ .+|+
T Consensus 253 -~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~---~C~kt~l-~~S~cnDI~~~~---~~~~Sg--H~Dk 322 (459)
T KOG0288|consen 253 -LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA---YCSKTVL-PGSQCNDIVCSI---SDVISG--HFDK 322 (459)
T ss_pred -hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhh---heecccc-ccccccceEecc---eeeeec--cccc
Confidence 6788999999999999998777788888 799999999986 5555544 345566666652 345554 4699
Q ss_pred eEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc----ccceeEEEECCCCC
Q psy8285 362 TVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH----QERILSAVLSPDQT 437 (507)
Q Consensus 362 ~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~----~~~i~~~~~s~~~~ 437 (507)
+|++||.++..+......++.|+++..++++..|++ .+.|..+.++|+++.+....+.+. ....+.+.|||++.
T Consensus 323 kvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLs--ssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~ 400 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLS--SSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS 400 (459)
T ss_pred ceEEEeccCCceeeEeecCcceeeEeeccCCeEEee--ecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc
Confidence 999999999999999999999999999999999999 689999999999998887777542 23478899999999
Q ss_pred EEEEEeCCCcEEEEecCCCCcccceeecC---CCcceEEeeccC
Q psy8285 438 CVAAASADETISIWNCFPRDKKRKARQVG---SGSSLEFAILKQ 478 (507)
Q Consensus 438 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 478 (507)
|+++||.||.|+||++.+++......... .+.++.|.+.+.
T Consensus 401 YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 401 YVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGS 444 (459)
T ss_pred eeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCc
Confidence 99999999999999999999888765433 345666666443
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-25 Score=175.12 Aligned_cols=280 Identities=20% Similarity=0.255 Sum_probs=217.5
Q ss_pred ccccceeeeeeCCCC-EEEEE-cCCeEEEEECC------CCc-----e-eEE-EecCCCCCCceEEEEEccCCCeEEEEe
Q psy8285 163 INDFYTSGLDWGYHD-TLAVA-LDTSVYTWNTK------TNK-----T-QLL-VEYPTYDNAYISCVAWKPRTTDLAVTN 227 (507)
Q Consensus 163 ~~~~~i~~~~~s~~~-~~~~~-~~~~i~iw~~~------~~~-----~-~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~ 227 (507)
.+...|.+++|+|.+ +++++ ...+++|-... .+. + ... ...+. |.+.|.|.+|+|+|+.++++
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~kh-hkgsiyc~~ws~~geliatg- 107 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKH-HKGSIYCTAWSPCGELIATG- 107 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccc-cCccEEEEEecCccCeEEec-
Confidence 444568899999988 77765 56666665322 111 0 111 12233 89999999999999999999
Q ss_pred CCCCcEEEEeCCCcee-----EEEEeecCccEEEEEe------eCCEEEEEec-CCeEEEEECCCCCcCceeeecCCCce
Q psy8285 228 TCTEYIDLWHEQEERL-----IQKLRTHMHQVIAMCW------NGNLLSCGTI-GGNILHYDVRTHSDYPTAITREGDVV 295 (507)
Q Consensus 228 ~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~------~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~v 295 (507)
+.|.+|++.-.+...+ -..+.-|.+.|..++| .+..|++++. |..|++-|...++ ....+.+|.+.|
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~a~sghtghi 186 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-GFHALSGHTGHI 186 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-cceeecCCcccE
Confidence 9999999987665432 2356679999999999 2556776653 5567777887775 677888999988
Q ss_pred EEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecC--C-----CCCeeEEEEccCCCcEEEEEccCCCCeEEEEe
Q psy8285 296 CGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQC--H-----LSAVKAIAWCPWEPTLLATGGGICDQTVRLWN 367 (507)
Q Consensus 296 ~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d 367 (507)
.++ ++-++-++++|+ |.+|++||++-. .++.++.. | ...|.+++..|.| ++++++.. |....+||
T Consensus 187 lal-yswn~~m~~sgsqdktirfwdlrv~---~~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~~--dssc~lyd 259 (350)
T KOG0641|consen 187 LAL-YSWNGAMFASGSQDKTIRFWDLRVN---SCVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHA--DSSCMLYD 259 (350)
T ss_pred EEE-EEecCcEEEccCCCceEEEEeeecc---ceeeeccCcccCCCcccceeEEEEECCCc-ceeeeccC--CCceEEEE
Confidence 765 344688999999 799999999987 44444321 2 3579999999998 68888775 99999999
Q ss_pred CCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc----cEEEEeeccccceeEEEECCCCCEEEEE
Q psy8285 368 SMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL----HLIEELKIHQERILSAVLSPDQTCVAAA 442 (507)
Q Consensus 368 ~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 442 (507)
++.+++++.+..+ ..|.++.|+|.-.|+++ ++.|..|++-|+... -++.....|...+..+.|+|..-.+++.
T Consensus 260 irg~r~iq~f~phsadir~vrfsp~a~yllt--~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 260 IRGGRMIQRFHPHSADIRCVRFSPGAHYLLT--CSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred eeCCceeeeeCCCccceeEEEeCCCceEEEE--ecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence 9999999998877 78999999999999999 899999999998642 2334455689999999999999899999
Q ss_pred eCCCcEEEEecC
Q psy8285 443 SADETISIWNCF 454 (507)
Q Consensus 443 ~~dg~i~iw~~~ 454 (507)
+.|.++.+|-+.
T Consensus 338 sadkt~tlwa~~ 349 (350)
T KOG0641|consen 338 SADKTATLWALN 349 (350)
T ss_pred cCcceEEEeccC
Confidence 999999999864
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-25 Score=204.99 Aligned_cols=319 Identities=17% Similarity=0.230 Sum_probs=228.3
Q ss_pred EEEE-EcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCC---eEEEEeCCCCcEEEEeCCCce-----------
Q psy8285 178 TLAV-ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTT---DLAVTNTCTEYIDLWHEQEER----------- 242 (507)
Q Consensus 178 ~~~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~~dg~i~iwd~~~~~----------- 242 (507)
++++ +.+..|.++.-...+......+.| |.+.|.+++|...+. +|+++ +.|..|+||.+.-+.
T Consensus 161 lla~Ggs~~~v~~~s~~~d~f~~v~el~G-H~DWIrsl~f~~~~~~~~~laS~-SQD~yIRiW~i~~~~~~~~~~~e~~~ 238 (764)
T KOG1063|consen 161 LLACGGSKFVVDLYSSSADSFARVAELEG-HTDWIRSLAFARLGGDDLLLASS-SQDRYIRIWRIVLGDDEDSNEREDSL 238 (764)
T ss_pred EEEecCcceEEEEeccCCcceeEEEEeec-cchhhhhhhhhccCCCcEEEEec-CCceEEEEEEEEecCCcccccccccc
Confidence 4454 477788888887788889999999 999999999987654 45555 999999999764221
Q ss_pred ----------eE----------EEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC------ceeeecCCCc
Q psy8285 243 ----------LI----------QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY------PTAITREGDV 294 (507)
Q Consensus 243 ----------~~----------~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~ 294 (507)
.. ..+.+|..-|.++.| .+..|++++.|.++.+|...+.... .....+....
T Consensus 239 t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~G 318 (764)
T KOG1063|consen 239 TTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGG 318 (764)
T ss_pred ccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccc
Confidence 11 112389999999999 4668999999999999998765311 1112233455
Q ss_pred eEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC----
Q psy8285 295 VCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM---- 369 (507)
Q Consensus 295 v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~---- 369 (507)
....-|+|+++.+++-+. |..++|.........+...+.+|.+.|..++|+|.|+++++++. |.+-|+|---
T Consensus 319 F~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~---DQTTRlFa~wg~q~ 395 (764)
T KOG1063|consen 319 FWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSL---DQTTRLFARWGRQQ 395 (764)
T ss_pred eeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecc---ccceeeeccccccc
Confidence 788999999999888885 99999995544333455667889999999999999988887764 5555554211
Q ss_pred ------------------------------------------C----------C----------------------Ce--
Q psy8285 370 ------------------------------------------N----------G----------------------KE-- 373 (507)
Q Consensus 370 ------------------------------------------~----------~----------------------~~-- 373 (507)
. + +.
T Consensus 396 ~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~ 475 (764)
T KOG1063|consen 396 EWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFF 475 (764)
T ss_pred ceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCc
Confidence 0 0 00
Q ss_pred ------------------------------------------eeeeecC-CCeEEEEECCCCCeEEEEecc---CCCeEE
Q psy8285 374 ------------------------------------------KCHVKTD-SQVTSILWSEQYRELVTSHGK---QDCSLK 407 (507)
Q Consensus 374 ------------------------------------------~~~~~~~-~~i~~~~~s~~~~~l~~~~g~---~d~~i~ 407 (507)
++.+-+| .+|.+++.+|+++.+|+++-+ +...|+
T Consensus 476 ~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~ 555 (764)
T KOG1063|consen 476 PGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIR 555 (764)
T ss_pred ccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEE
Confidence 0000123 468999999999999996422 234699
Q ss_pred EEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcc-cceeecCCCcceEEeeccCccccceee
Q psy8285 408 MWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKK-RKARQVGSGSSLEFAILKQPVSLTALL 486 (507)
Q Consensus 408 v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (507)
+|+..+...++.+.+|.-.|+.++|||||++|++.+.|.++.+|+....... ........-..+-|.- .++.+...
T Consensus 556 lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdc---sW~pde~~ 632 (764)
T KOG1063|consen 556 LWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDC---SWSPDEKY 632 (764)
T ss_pred EEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEc---ccCcccce
Confidence 9999999999999999999999999999999999999999999998654332 2223333344444433 34444444
Q ss_pred eecccccccceeEEeeec
Q psy8285 487 RSRAVEKQQHAIAYTVFG 504 (507)
Q Consensus 487 ~~~~~~~~~~~i~~~~~g 504 (507)
.+.+..|....+.-.+++
T Consensus 633 FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 633 FATASRDKKVKVWEEPDL 650 (764)
T ss_pred eEEecCCceEEEEeccCc
Confidence 666666666665555444
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=202.46 Aligned_cols=284 Identities=17% Similarity=0.259 Sum_probs=227.2
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eC
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NG 261 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~ 261 (507)
...+.+||+.+|.....+...+ ...-.++..- .+.+++++......+.+|.+..........--.+++.++.- +|
T Consensus 17 ~~~~~~~dl~TGt~~~~ykg~~--~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G 93 (476)
T KOG0646|consen 17 PINCIVWDLRTGTSLLQYKGSY--LAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLG 93 (476)
T ss_pred CcceeEEecCCCceeEEecCcc--cccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCc
Confidence 3469999999998655544221 1111222211 23677777566778999998766555433346678888887 58
Q ss_pred CEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCC------CCCCCeeeecC
Q psy8285 262 NLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQL------DAKRPQVNNQC 334 (507)
Q Consensus 262 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~------~~~~~~~~~~~ 334 (507)
.+|+.|+..|.|++|.+.++. ....+..|-..|+|+.|+.|+.+|++|+ ||.|.+|.+... ...+++..+..
T Consensus 94 ~~l~ag~i~g~lYlWelssG~-LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~ 172 (476)
T KOG0646|consen 94 YFLLAGTISGNLYLWELSSGI-LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD 172 (476)
T ss_pred eEEEeecccCcEEEEEecccc-HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence 888888899999999999997 6677789999999999999999999999 799999987432 24578889999
Q ss_pred CCCCeeEEEEccCCC-cEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 335 HLSAVKAIAWCPWEP-TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 335 ~~~~v~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
|.-+|+.+...+.+. -.+++++. |.++++||+..+..+..+..+..+.+++.+|-++.+++ |+++|.|.+.++..
T Consensus 173 HtlsITDl~ig~Gg~~~rl~TaS~--D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yi--Gt~~G~I~~~~~~~ 248 (476)
T KOG0646|consen 173 HTLSITDLQIGSGGTNARLYTASE--DRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYI--GTEEGKIFQNLLFK 248 (476)
T ss_pred CcceeEEEEecCCCccceEEEecC--CceEEEEEeccceeeEEEecCCcceeEEEcccccEEEe--cCCcceEEeeehhc
Confidence 999999999887532 23444443 99999999999999999999999999999999999999 99999999988743
Q ss_pred c----------------cEEEEeecccc--ceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccccee-ecCCCcceEEe
Q psy8285 414 L----------------HLIEELKIHQE--RILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR-QVGSGSSLEFA 474 (507)
Q Consensus 414 ~----------------~~~~~~~~~~~--~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~ 474 (507)
. ..+..+.+|.+ .|++++.+-||..|++|+.||.|+|||+.+...++... ..+++..+.+.
T Consensus 249 ~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~ 328 (476)
T KOG0646|consen 249 LSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQIN 328 (476)
T ss_pred CCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEee
Confidence 2 34556778988 99999999999999999999999999999999998887 77888888774
Q ss_pred e
Q psy8285 475 I 475 (507)
Q Consensus 475 ~ 475 (507)
|
T Consensus 329 ~ 329 (476)
T KOG0646|consen 329 P 329 (476)
T ss_pred c
Confidence 3
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=223.55 Aligned_cols=266 Identities=17% Similarity=0.277 Sum_probs=221.1
Q ss_pred CCCceEEEEEccCCCeEEEEeC--CCCcEEEEeCCC------------ceeEEEEeecCccEEEEEe--eCCEEEEEecC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNT--CTEYIDLWHEQE------------ERLIQKLRTHMHQVIAMCW--NGNLLSCGTIG 270 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~--~dg~i~iwd~~~------------~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d 270 (507)
+...|.++..+|++..++++ + .||.++||+... .+.+.+...|.+.|.|+.| ||.+||+|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTg-Gq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATG-GQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred CCeeEEEEEecCCceeEecC-CccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 56679999999999999999 6 889999998642 2345566789999999999 89999999999
Q ss_pred CeEEEEECCC------CC-----------cCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeee
Q psy8285 271 GNILHYDVRT------HS-----------DYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNN 332 (507)
Q Consensus 271 g~i~i~d~~~------~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~ 332 (507)
+.|.||+... .. .....+.+|...|..++|+|++.++++++ |++|.+|+.++. ..+..+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF---~~~~vl 167 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF---ELLKVL 167 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc---eeeeee
Confidence 9999999883 10 13456789999999999999999999999 899999999998 899999
Q ss_pred cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-------CCeEEEEECCCCCeEEEEeccCC--
Q psy8285 333 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-------SQVTSILWSEQYRELVTSHGKQD-- 403 (507)
Q Consensus 333 ~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~i~~~~~s~~~~~l~~~~g~~d-- 403 (507)
.+|.+.|..+.|.|-|+++...+. |++|++|++.+....+.+..+ ..+..+.|||||++|++..+-..
T Consensus 168 ~~H~s~VKGvs~DP~Gky~ASqsd---Drtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~ 244 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDPIGKYFASQSD---DRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGK 244 (942)
T ss_pred ecccccccceEECCccCeeeeecC---CceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCc
Confidence 999999999999999965555444 999999998887776666543 35889999999999998643222
Q ss_pred CeEEEEeCCCccEEEEeeccccceeEEEECCC-----CC------------EEEEEeCCCcEEEEecCCCCccccee--e
Q psy8285 404 CSLKMWEYPRLHLIEELKIHQERILSAVLSPD-----QT------------CVAAASADETISIWNCFPRDKKRKAR--Q 464 (507)
Q Consensus 404 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~-----~~------------~l~s~~~dg~i~iw~~~~~~~~~~~~--~ 464 (507)
.++.|.+-.+.+.-..+-+|..++..++|+|. .. .+|+|+.|++|.||.....++..... .
T Consensus 245 ~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf 324 (942)
T KOG0973|consen 245 STIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLF 324 (942)
T ss_pred ceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhh
Confidence 36899998888888899999999999999981 11 57889999999999998888877665 4
Q ss_pred cCCCcceEEeeccCc
Q psy8285 465 VGSGSSLEFAILKQP 479 (507)
Q Consensus 465 ~~~~~~~~~~~~~~~ 479 (507)
..++..+.|+++...
T Consensus 325 ~~SI~DmsWspdG~~ 339 (942)
T KOG0973|consen 325 NKSIVDMSWSPDGFS 339 (942)
T ss_pred cCceeeeeEcCCCCe
Confidence 456677778877654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-25 Score=213.16 Aligned_cols=243 Identities=11% Similarity=0.183 Sum_probs=181.6
Q ss_pred CCCCcEEEEeCCCceeEEEEeecCccEEEEEee---CCEEEEEecCCeEEEEECCCCCc-------CceeeecCCCceEE
Q psy8285 228 TCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN---GNLLSCGTIGGNILHYDVRTHSD-------YPTAITREGDVVCG 297 (507)
Q Consensus 228 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~v~~ 297 (507)
+.++.+++|+......+..+.+|...|.+++|+ +++|++|+.|+.|++||+.+... +...+.+|...|.+
T Consensus 51 G~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~s 130 (568)
T PTZ00420 51 GLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI 130 (568)
T ss_pred CceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEE
Confidence 678899999988878888899999999999993 67999999999999999986431 23356789999999
Q ss_pred EEEcCCCCEE-EEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee
Q psy8285 298 LKWSPNGRYL-ASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC 375 (507)
Q Consensus 298 ~~~~~~~~~l-~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 375 (507)
++|+|++..+ ++++ |+.|++||++++ +....+. |...|.+++|+|+|..+ ++++. |+.|++||+++++.+.
T Consensus 131 Vaf~P~g~~iLaSgS~DgtIrIWDl~tg---~~~~~i~-~~~~V~SlswspdG~lL-at~s~--D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 131 IDWNPMNYYIMCSSGFDSFVNIWDIENE---KRAFQIN-MPKKLSSLKWNIKGNLL-SGTCV--GKHMHIIDPRKQEIAS 203 (568)
T ss_pred EEECCCCCeEEEEEeCCCeEEEEECCCC---cEEEEEe-cCCcEEEEEECCCCCEE-EEEec--CCEEEEEECCCCcEEE
Confidence 9999998764 6777 799999999987 5555554 66789999999999655 44443 9999999999999988
Q ss_pred eeecCC-Ce-----EEEEECCCCCeEEEEeccCC---CeEEEEeCCC-ccEEEEeec--cccceeEEEECCCCCEEEEEe
Q psy8285 376 HVKTDS-QV-----TSILWSEQYRELVTSHGKQD---CSLKMWEYPR-LHLIEELKI--HQERILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 376 ~~~~~~-~i-----~~~~~s~~~~~l~~~~g~~d---~~i~v~d~~~-~~~~~~~~~--~~~~i~~~~~s~~~~~l~s~~ 443 (507)
.+..|. .+ ....|++++.+|+++ |..+ +.|+|||+++ .+++..+.. +.+.+......+++.++++|+
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTt-G~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILST-GFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEE-EcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEE
Confidence 887763 32 223456899999985 3332 4799999985 556655432 233333344455688999999
Q ss_pred CCCcEEEEecCCCCccc--ceeecCCCcceEEeeccC
Q psy8285 444 ADETISIWNCFPRDKKR--KARQVGSGSSLEFAILKQ 478 (507)
Q Consensus 444 ~dg~i~iw~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 478 (507)
.|+.|++|++..+.... ......+...+.+.|...
T Consensus 283 GD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 283 GDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred CCCeEEEEEccCCcEEeecccccCCCccceEEccccc
Confidence 99999999997664221 222333445566666544
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-26 Score=199.73 Aligned_cols=277 Identities=15% Similarity=0.278 Sum_probs=227.9
Q ss_pred cccceeeeeeCCCC--EEEEEcCCeEEEEECCCCcee-EEE-------------ec--CCCCCCceEEEEEccCCCeEEE
Q psy8285 164 NDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQ-LLV-------------EY--PTYDNAYISCVAWKPRTTDLAV 225 (507)
Q Consensus 164 ~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~-~~~-------------~~--~~~~~~~v~~~~~~~~~~~l~~ 225 (507)
+...+.+++.+|+. .+.++.++.|.-|+..+++.. .+. .. .+ |...+.+++.++||++|++
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~-h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKG-HVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccccc-ccceeEEEEEcCCCcEEEe
Confidence 34568889999985 888899999999999887632 110 11 14 8889999999999999999
Q ss_pred EeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCC
Q psy8285 226 TNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN 303 (507)
Q Consensus 226 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 303 (507)
+ +.|..|.||+..+.+.++.+.+|.+.|.+++| ....+++++.|+.|++|++.... ....+.+|.+.|.++....-
T Consensus 220 g-g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s-~vetlyGHqd~v~~IdaL~r 297 (479)
T KOG0299|consen 220 G-GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS-YVETLYGHQDGVLGIDALSR 297 (479)
T ss_pred c-CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH-HHHHHhCCccceeeechhcc
Confidence 9 99999999999999999999999999999999 56789999999999999999876 67788999999999998888
Q ss_pred CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec---
Q psy8285 304 GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT--- 379 (507)
Q Consensus 304 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--- 379 (507)
++.+.+|+ |+++++|++.. .....+.++.+.+.|++|-.+. ++ ++|+ .+|.|.+|++.+.+++.+...
T Consensus 298 eR~vtVGgrDrT~rlwKi~e----esqlifrg~~~sidcv~~In~~-Hf-vsGS--dnG~IaLWs~~KKkplf~~~~AHg 369 (479)
T KOG0299|consen 298 ERCVTVGGRDRTVRLWKIPE----ESQLIFRGGEGSIDCVAFINDE-HF-VSGS--DNGSIALWSLLKKKPLFTSRLAHG 369 (479)
T ss_pred cceEEeccccceeEEEeccc----cceeeeeCCCCCeeeEEEeccc-ce-eecc--CCceEEEeeecccCceeEeecccc
Confidence 88888887 89999999965 3455667788899999998765 44 4444 499999999999988776532
Q ss_pred ----------CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc----cEEEEeeccccceeEEEECCCCCEEEEE-eC
Q psy8285 380 ----------DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL----HLIEELKIHQERILSAVLSPDQTCVAAA-SA 444 (507)
Q Consensus 380 ----------~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~----~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~ 444 (507)
+..|++++..|....+++ |+.+|.|++|-+..+ +++..+. -.+-|++++|+++|+.+++| +.
T Consensus 370 v~~~~~~~~~~~Witsla~i~~sdL~as--GS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 370 VIPELDPVNGNFWITSLAVIPGSDLLAS--GSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred ccCCccccccccceeeeEecccCceEEe--cCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccc
Confidence 126899999999999999 999999999998776 5566666 57889999999999966554 55
Q ss_pred CCcEEEEecC
Q psy8285 445 DETISIWNCF 454 (507)
Q Consensus 445 dg~i~iw~~~ 454 (507)
...+--|-..
T Consensus 447 EhRlGRW~~~ 456 (479)
T KOG0299|consen 447 EHRLGRWWCL 456 (479)
T ss_pred ccccceeeEe
Confidence 5555555543
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=209.83 Aligned_cols=235 Identities=21% Similarity=0.346 Sum_probs=199.2
Q ss_pred ceeeeeeCCCC-EEE-EEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 167 YTSGLDWGYHD-TLA-VALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~-~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.|+++.|+++| .|+ +..+|.|.|||..+.+....+... |...|-+++|. +..+.++ +.++.|..+|++..+..
T Consensus 219 ~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~--h~~rvg~laW~--~~~lssG-sr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 219 LVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS--HASRVGSLAWN--SSVLSSG-SRDGKILNHDVRISQHV 293 (484)
T ss_pred ceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCC--cCceeEEEecc--CceEEEe-cCCCcEEEEEEecchhh
Confidence 46678888887 555 459999999999877665554432 78999999998 4455555 99999999999987665
Q ss_pred EE-EeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC-CCCEEEEEe---CCcEEE
Q psy8285 245 QK-LRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP-NGRYLASGS---NNTVKI 317 (507)
Q Consensus 245 ~~-~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~---d~~i~i 317 (507)
.. +.+|...|..+.| |+.++|+|+.|+.+.|||....+ +...+..|...|..++|+| ...+||+|+ |+.|++
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~f 372 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKF 372 (484)
T ss_pred hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc-ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEE
Confidence 55 8889999999999 89999999999999999996654 7888999999999999999 567888876 699999
Q ss_pred EEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEE
Q psy8285 318 WDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELV 396 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~ 396 (507)
||..++ ..+.... ....|..|.|++..+.++++.+ ..+..|.||+..+.+.+..+.+| ..|..++++|||..++
T Consensus 373 wn~~~g---~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG-~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~ 447 (484)
T KOG0305|consen 373 WNTNTG---ARIDSVD-TGSQVCSLIWSKKYKELLSTHG-YSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIV 447 (484)
T ss_pred EEcCCC---cEecccc-cCCceeeEEEcCCCCEEEEecC-CCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEE
Confidence 999987 5655554 6678999999999877777664 56789999999999999988888 7899999999999999
Q ss_pred EEeccCCCeEEEEeCCCc
Q psy8285 397 TSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 397 ~~~g~~d~~i~v~d~~~~ 414 (507)
+ |+.|.++++|++-..
T Consensus 448 t--~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 448 T--GAADETLRFWNLFDE 463 (484)
T ss_pred E--ecccCcEEeccccCC
Confidence 9 788999999998764
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=208.74 Aligned_cols=310 Identities=19% Similarity=0.277 Sum_probs=237.7
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeeecCcccceeeccccccccccCCccCCceeEeecC
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRESSRSKMVNTDRYVVDRS 81 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 81 (507)
++||++.|+||+..|.|.+ ||+|+ .||+||||.+.+|+|++++...+.|.+++|+|....
T Consensus 396 yrGHtg~Vr~iSvdp~G~w-lasGs--dDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~----------------- 455 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEW-LASGS--DDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDL----------------- 455 (733)
T ss_pred EeccCCeEEEEEecCCcce-eeecC--CCCcEEEEEeecceEEEEEeecceeEEEEecCCCCc-----------------
Confidence 4699999999999999997 99999 999999999999999998887777777776643321
Q ss_pred CccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCCC
Q psy8285 82 SYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPS 161 (507)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (507)
T Consensus 456 -------------------------------------------------------------------------------- 455 (733)
T KOG0650|consen 456 -------------------------------------------------------------------------------- 455 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEE---eCCCCcEEEEeC
Q psy8285 162 IINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVT---NTCTEYIDLWHE 238 (507)
Q Consensus 162 ~~~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~~dg~i~iwd~ 238 (507)
.++|++.+..+.|.+..-|....... ....|+.+ ...++.+..|.-
T Consensus 456 ---------------~vLAvA~~~~~~ivnp~~G~~~e~~~----------------t~ell~~~~~~~~p~~~~~~W~~ 504 (733)
T KOG0650|consen 456 ---------------CVLAVAVGECVLIVNPIFGDRLEVGP----------------TKELLASAPNESEPDAAVVTWSR 504 (733)
T ss_pred ---------------eeEEEEecCceEEeCccccchhhhcc----------------hhhhhhcCCCccCCcccceeech
Confidence 15666666566666654442211100 00011111 134556667764
Q ss_pred CCce----eEEEEeecCccEEEEEe--eCCEEEEEecC---CeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEE
Q psy8285 239 QEER----LIQKLRTHMHQVIAMCW--NGNLLSCGTIG---GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 239 ~~~~----~~~~~~~~~~~v~~~~~--~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 309 (507)
...+ -+...-.|...|..+.| .|++|++...+ ..|.|+++.... ....+....+.+.++.|+|...+|++
T Consensus 505 ~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~-sQ~PF~kskG~vq~v~FHPs~p~lfV 583 (733)
T KOG0650|consen 505 ASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK-SQSPFRKSKGLVQRVKFHPSKPYLFV 583 (733)
T ss_pred hhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc-ccCchhhcCCceeEEEecCCCceEEE
Confidence 4211 13445568999999999 69999988764 468999998765 33455566778999999999999999
Q ss_pred EeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC-CeeeeeecC-CCeEEEE
Q psy8285 310 GSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG-KEKCHVKTD-SQVTSIL 387 (507)
Q Consensus 310 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~-~~i~~~~ 387 (507)
++...|+|||+... ..++.+......|..++.+|.|.++++.+ +|+.+..||+.-. ++.+.+..| ..+++++
T Consensus 584 aTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~gs---~d~k~~WfDldlsskPyk~lr~H~~avr~Va 657 (733)
T KOG0650|consen 584 ATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILGS---YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVA 657 (733)
T ss_pred EeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEec---CCCeeEEEEcccCcchhHHhhhhhhhhhhhh
Confidence 99999999999886 66667776778899999999999999854 4999999999755 567777777 6799999
Q ss_pred ECCCCCeEEEEeccCCCeEEEEeCCC---------ccEEEEeeccccc----eeEEEECCCCCEEEEEeCCCcEEEE
Q psy8285 388 WSEQYRELVTSHGKQDCSLKMWEYPR---------LHLIEELKIHQER----ILSAVLSPDQTCVAAASADETISIW 451 (507)
Q Consensus 388 ~s~~~~~l~~~~g~~d~~i~v~d~~~---------~~~~~~~~~~~~~----i~~~~~s~~~~~l~s~~~dg~i~iw 451 (507)
|++.-.++++ |+.||.+.||.-.- --++..+++|... |....|+|...+|++++.||+|++|
T Consensus 658 ~H~ryPLfas--~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 658 FHKRYPLFAS--GSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hccccceeee--ecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 9999999999 89999999986321 2456778888765 8899999999999999999999998
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=212.06 Aligned_cols=244 Identities=15% Similarity=0.177 Sum_probs=182.7
Q ss_pred EcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccC-CCeEEEEeCCCCcEEEEeCCCce--------eEEEEeecCc
Q psy8285 182 ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR-TTDLAVTNTCTEYIDLWHEQEER--------LIQKLRTHMH 252 (507)
Q Consensus 182 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~ 252 (507)
+..+.|++|+..... .+..+.+ |.+.|.+++|+|+ +.+|+++ +.||.|+|||+.++. .+..+.+|..
T Consensus 51 G~~gvI~L~~~~r~~--~v~~L~g-H~~~V~~lafsP~~~~lLASg-S~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 51 GLIGAIRLENQMRKP--PVIKLKG-HTSSILDLQFNPCFSEILASG-SEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CceeEEEeeecCCCc--eEEEEcC-CCCCEEEEEEcCCCCCEEEEE-eCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 456789999876543 4455666 9999999999997 6788888 999999999997642 3446778999
Q ss_pred cEEEEEee--CC-EEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCC
Q psy8285 253 QVIAMCWN--GN-LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRP 328 (507)
Q Consensus 253 ~v~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~ 328 (507)
.|.+++|+ +. +|++++.|+.|++||+++++. ...+. +...|.+++|+|+|++|++++ |+.|++||++++ ..
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg---~~ 201 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ---EI 201 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC---cE
Confidence 99999993 44 567899999999999998763 33333 567899999999999999888 799999999988 77
Q ss_pred eeeecCCCCCeeEE-----EEccCCCcEEEEEccC-CCCeEEEEeCCC-CCeeeeeecCC--C-eEEEEECCCCCeEEEE
Q psy8285 329 QVNNQCHLSAVKAI-----AWCPWEPTLLATGGGI-CDQTVRLWNSMN-GKEKCHVKTDS--Q-VTSILWSEQYRELVTS 398 (507)
Q Consensus 329 ~~~~~~~~~~v~~~-----~~~~~~~~~~~~~~~~-~d~~i~i~d~~~-~~~~~~~~~~~--~-i~~~~~s~~~~~l~~~ 398 (507)
+..+.+|.+.+... .|++++..+++++... .+++|+|||+++ .+++..+..+. . +......+++.++++
T Consensus 202 i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls- 280 (568)
T PTZ00420 202 ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLI- 280 (568)
T ss_pred EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEE-
Confidence 77888888765433 3457877777766520 125899999995 56666655443 2 223333445777777
Q ss_pred eccCCCeEEEEeCCCccEEEEeec--cccceeEEEECCCCC
Q psy8285 399 HGKQDCSLKMWEYPRLHLIEELKI--HQERILSAVLSPDQT 437 (507)
Q Consensus 399 ~g~~d~~i~v~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~ 437 (507)
|..|+.|++|++..+. +..+.. +..++.+++|.|+..
T Consensus 281 -GkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 281 -GKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred -EECCCeEEEEEccCCc-EEeecccccCCCccceEEccccc
Confidence 8899999999998764 233322 556788999999743
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-26 Score=207.54 Aligned_cols=267 Identities=15% Similarity=0.235 Sum_probs=223.9
Q ss_pred eeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEE-EEEcc-CCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 168 TSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISC-VAWKP-RTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
+..++..++. +++++.|+++++|+....+......+.+ +.+.|.+ +++.+ ++.+++++ +.|..+.+|...+..++
T Consensus 17 Vr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~-~~g~i~~~i~y~e~~~~~l~~g-~~D~~i~v~~~~~~~P~ 94 (745)
T KOG0301|consen 17 VRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEG-PKGFIANSICYAESDKGRLVVG-GMDTTIIVFKLSQAEPL 94 (745)
T ss_pred hheeEecCCeEEeecCCCCceeeeeccCcccccceeccc-CcceeeccceeccccCcceEee-cccceEEEEecCCCCch
Confidence 3445555555 7778889999999998888887777777 7777777 88875 44457778 99999999999999999
Q ss_pred EEEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q psy8285 245 QKLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQ 322 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~ 322 (507)
..+.+|...|.+++. ....+++|+.|.++++|.... +...+.+|...|..++.-|++ .+++|+ |.+|++|.-.
T Consensus 95 ~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~- 169 (745)
T KOG0301|consen 95 YTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG- 169 (745)
T ss_pred hhhhccccceeeeecCCcCceEecccccceEEecchh---hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC-
Confidence 999999999999997 444489999999999998864 455689999999999999998 566666 8999999863
Q ss_pred CCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEecc
Q psy8285 323 LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGK 401 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~ 401 (507)
+.+.++.+|..-|+.+++-+++ .++.++. ||.|++|++ +++++..+.+| +-+.+++..+++..+++ .+
T Consensus 170 ----~~l~tf~gHtD~VRgL~vl~~~-~flScsN---Dg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs--~g 238 (745)
T KOG0301|consen 170 ----TLLKTFSGHTDCVRGLAVLDDS-HFLSCSN---DGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVS--TG 238 (745)
T ss_pred ----chhhhhccchhheeeeEEecCC-CeEeecC---CceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEE--ec
Confidence 6889999999999999999976 5666654 999999999 77777777766 67999998888888988 67
Q ss_pred CCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 402 QDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 402 ~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
+|++++||+.. ++.+.+.-....|+++.+-++|. +++|++||.||||....
T Consensus 239 EDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 239 EDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 99999999976 77777775566899999988886 67788999999999873
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-24 Score=199.38 Aligned_cols=250 Identities=11% Similarity=0.072 Sum_probs=182.9
Q ss_pred eeeCCCC--EEE-EEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE
Q psy8285 171 LDWGYHD--TLA-VALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 171 ~~~s~~~--~~~-~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~ 247 (507)
++|+|++ +++ ++.++.|++||..+++....... + ..+..++|+|+++.+++++..++.+++||+.+.+.+..+
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~ 111 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS---G-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI 111 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC---C-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe
Confidence 4555655 323 34788999999998876554432 2 235678999999988776456899999999988877766
Q ss_pred eecCccEEEEEe--eCCEEEEEecCC-eEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--CCcEEEEEcCC
Q psy8285 248 RTHMHQVIAMCW--NGNLLSCGTIGG-NILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--NNTVKIWDFRQ 322 (507)
Q Consensus 248 ~~~~~~v~~~~~--~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~ 322 (507)
.. ...+.+++| +++.++++..++ .+.+||.++.+. ..... ......+++|+|+++++++++ ++.|++||+++
T Consensus 112 ~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 112 PV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEI-VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred eC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeE-EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 53 234567777 788888888765 467789877542 22222 233457799999999886554 59999999998
Q ss_pred CCCCCCeeeecCC-------CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeE
Q psy8285 323 LDAKRPQVNNQCH-------LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYREL 395 (507)
Q Consensus 323 ~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l 395 (507)
+ +.+..+..+ ......++|+|+++.++++... ++.+.+||+++++.+..+.....+.+++|+|+|++|
T Consensus 189 ~---~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l 263 (300)
T TIGR03866 189 R---KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP--ANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYL 263 (300)
T ss_pred c---eeeeeeeecccccccccCCccceEECCCCCEEEEEcCC--CCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEE
Confidence 7 443333211 1123568899999876665543 778999999998887766656678999999999999
Q ss_pred EEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECC
Q psy8285 396 VTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSP 434 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~ 434 (507)
+++ ...++.|.+||+.+++.+..++.. ...+.++++|
T Consensus 264 ~~~-~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 264 LTT-NGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEE-cCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 884 356899999999999999999864 4558888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-27 Score=212.58 Aligned_cols=270 Identities=16% Similarity=0.289 Sum_probs=229.4
Q ss_pred EEEEEcCCeEEEEECCCCce----eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc--eeEEEEeecC
Q psy8285 178 TLAVALDTSVYTWNTKTNKT----QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE--RLIQKLRTHM 251 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~--~~~~~~~~~~ 251 (507)
++++|.||.|++|+...... .....++. |.+.|..+....+++.|+++ +.|-+|++|+...+ -+..++..|.
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~~s~~~~asme~-HsDWVNDiiL~~~~~tlIS~-SsDtTVK~W~~~~~~~~c~stir~H~ 117 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNEPSTPYIASMEH-HSDWVNDIILCGNGKTLISA-SSDTTVKVWNAHKDNTFCMSTIRTHK 117 (735)
T ss_pred EEecCCCceEEEeccccccCCcccchhhhhhh-hHhHHhhHHhhcCCCceEEe-cCCceEEEeecccCcchhHhhhhccc
Confidence 88999999999999865332 12444555 99999999999999999999 99999999999877 5777888999
Q ss_pred ccEEEEEe---eCCEEEEEecCCeEEEEECCCCCc---------Cceeee-cCCCceEEEEEcCCCCEEEEEe-CCcEEE
Q psy8285 252 HQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSD---------YPTAIT-REGDVVCGLKWSPNGRYLASGS-NNTVKI 317 (507)
Q Consensus 252 ~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-d~~i~i 317 (507)
.-|.|+++ +..++|+|+-|+.|.+||++++.. ....+. ++...|++++.++.|..+++|+ ++.+++
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~ 197 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRL 197 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEE
Confidence 99999999 788999999999999999997631 112223 7888999999999998999988 699999
Q ss_pred EEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEE
Q psy8285 318 WDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELV 396 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~ 396 (507)
||.++. +.+..+.+|...|..+..++||.+++.+++ ||+|++||+...+++.++..| ..+.++..+|+-.+++
T Consensus 198 wDprt~---~kimkLrGHTdNVr~ll~~dDGt~~ls~sS---DgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 198 WDPRTC---KKIMKLRGHTDNVRVLLVNDDGTRLLSASS---DGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred eccccc---cceeeeeccccceEEEEEcCCCCeEeecCC---CceEEeeeccccceeeeEEeccCceEEEeeCCCcceEE
Confidence 999998 888888999999999999999988888776 999999999999999998877 5699999999999999
Q ss_pred EEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 397 TSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 397 ~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
+ |+.||.|..=|+++......+-....+|..+..+.+.+-+-+++.|+.|+-|......
T Consensus 272 s--G~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~ 330 (735)
T KOG0308|consen 272 S--GGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI 330 (735)
T ss_pred e--cCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcccc
Confidence 9 9999999999999864444444456778888877655555778889999999987654
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-25 Score=181.87 Aligned_cols=261 Identities=17% Similarity=0.210 Sum_probs=203.7
Q ss_pred ceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 167 YTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.|..+.|+|.. +++++.||.+++|+....+....+. |..++.+++|.++ ..++++ +.||.|+.+|+++++..
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~----~~~plL~c~F~d~-~~~~~G-~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK----HGAPLLDCAFADE-STIVTG-GLDGQVRRYDLNTGNED 88 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee----cCCceeeeeccCC-ceEEEe-ccCceEEEEEecCCcce
Confidence 47778888754 8888999999999998876655555 8899999999974 567777 89999999999987554
Q ss_pred EEEeecCccEEEEEee--CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcC
Q psy8285 245 QKLRTHMHQVIAMCWN--GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR 321 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~ 321 (507)
.+..|..++.++.+. ...+++|+.|++|++||.+... ....+ .....|.++..+ ++.|++|. +..|.+||++
T Consensus 89 -~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~~~-d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 89 -QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-VVGTF-DQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred -eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-ccccc-ccCceEEEEecc--CCEEEEeecCceEEEEEcc
Confidence 455699999999994 7889999999999999999743 22223 234478877765 55677755 7999999999
Q ss_pred CCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC----CeeeeeecC----------CCeEEEE
Q psy8285 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG----KEKCHVKTD----------SQVTSIL 387 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~----~~~~~~~~~----------~~i~~~~ 387 (507)
+....... .-..-.-.++++++.|++.-+++++- ||.|.+=.+... +....++.| .+|++++
T Consensus 164 n~~~~~q~-reS~lkyqtR~v~~~pn~eGy~~sSi---eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 164 NLDEPFQR-RESSLKYQTRCVALVPNGEGYVVSSI---EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred cccchhhh-ccccceeEEEEEEEecCCCceEEEee---cceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 87332211 12224457899999997766666554 999888666554 222333322 2689999
Q ss_pred ECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeC
Q psy8285 388 WSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 388 ~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 444 (507)
|+|-.+.+++ |+.||.|.+||+.+.+.+..+......|.+++|+.+|..||.++.
T Consensus 240 Fhp~~~tfaT--gGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 240 FHPIHGTFAT--GGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred eccccceEEe--cCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 9999999999 889999999999999999999877788999999999999999874
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=211.61 Aligned_cols=264 Identities=16% Similarity=0.239 Sum_probs=217.0
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-eeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCc
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE-RLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYP 285 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 285 (507)
|....+.++|.|+|..|+++ +.||.|++|+.... +....+..+...|.+++.+.++|++++.+++|.+|.+..++ ..
T Consensus 12 ht~G~t~i~~d~~gefi~tc-gsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~-~~ 89 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTC-GSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGE-ED 89 (933)
T ss_pred ccCceEEEEEcCCCCEEEEe-cCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCC-cc
Confidence 78889999999999999999 99999999998766 44444444888899999988899999999999999999876 44
Q ss_pred eeeecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEE
Q psy8285 286 TAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVR 364 (507)
Q Consensus 286 ~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~ 364 (507)
..+....-++++++|+.+|+++|.|+| -.|++.++.+. .....+.+|.++|.++.|+|.+..+.++.. ||.|+
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~---s~~~~lrgh~apVl~l~~~p~~~fLAvss~---dG~v~ 163 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS---SQEKVLRGHDAPVLQLSYDPKGNFLAVSSC---DGKVQ 163 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEecccc---chheeecccCCceeeeeEcCCCCEEEEEec---CceEE
Confidence 456667788999999999999999995 99999999887 778889999999999999999965555544 99999
Q ss_pred EEeCCCCCeeeeeec---------CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec--cccceeEEEEC
Q psy8285 365 LWNSMNGKEKCHVKT---------DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI--HQERILSAVLS 433 (507)
Q Consensus 365 i~d~~~~~~~~~~~~---------~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~--~~~~i~~~~~s 433 (507)
+||+.++.+..++.. ...+..++|+|+|..+++ ...|+.|++|+..++++...+.. +...+..++|+
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~--~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~ws 241 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV--PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWS 241 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEe--eccCCeEEEEccCCceeheeecccccccceEEEEEc
Confidence 999999987766643 134678999999888887 56799999999999998887754 44559999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCcccceeecCCCcceEEeeccCccccc
Q psy8285 434 PDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAILKQPVSLT 483 (507)
Q Consensus 434 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (507)
|.|+|||+++.||.|.|||+.+.+. ......+..+.|.+....+.+.
T Consensus 242 PnG~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~ 288 (933)
T KOG1274|consen 242 PNGKYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLI 288 (933)
T ss_pred CCCcEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEE
Confidence 9999999999999999999997333 2233334555566655554443
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=190.25 Aligned_cols=265 Identities=15% Similarity=0.272 Sum_probs=223.6
Q ss_pred EEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC------CC-------------
Q psy8285 180 AVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE------QE------------- 240 (507)
Q Consensus 180 ~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~------~~------------- 240 (507)
+++.|.+.+||.++++.+...+ .| |.+.|.+++|++.+.+++++ +.|++-.||.. ..
T Consensus 165 tASADhTA~iWs~Esg~CL~~Y--~G-H~GSVNsikfh~s~~L~lTa-SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~ 240 (481)
T KOG0300|consen 165 TASADHTARIWSLESGACLATY--TG-HTGSVNSIKFHNSGLLLLTA-SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEE 240 (481)
T ss_pred ecccccceeEEeeccccceeee--cc-cccceeeEEeccccceEEEc-cCCcchHHHHHhhcCcCCCCCCCCCCCchhhh
Confidence 4568999999999999876554 45 99999999999999999998 99999999962 10
Q ss_pred -----------------c----eeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEE
Q psy8285 241 -----------------E----RLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCG 297 (507)
Q Consensus 241 -----------------~----~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 297 (507)
+ .++..+.+|...|.+..| .++.+++++.|.+-.+||+++++ +...+.+|....+.
T Consensus 241 e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge-~v~~LtGHd~ELtH 319 (481)
T KOG0300|consen 241 EHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE-VVNILTGHDSELTH 319 (481)
T ss_pred hcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc-eeccccCcchhccc
Confidence 0 134567789999999999 79999999999999999999987 78899999999999
Q ss_pred EEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC-eee
Q psy8285 298 LKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKC 375 (507)
Q Consensus 298 ~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~ 375 (507)
++-+|..+++++.+ |.+.++||++.. ...+..+.+|...|++..|..+. + +++++. |.+|++||+++.+ ++.
T Consensus 320 cstHptQrLVvTsSrDtTFRLWDFRea--I~sV~VFQGHtdtVTS~vF~~dd-~-vVSgSD--DrTvKvWdLrNMRsplA 393 (481)
T KOG0300|consen 320 CSTHPTQRLVVTSSRDTTFRLWDFREA--IQSVAVFQGHTDTVTSVVFNTDD-R-VVSGSD--DRTVKVWDLRNMRSPLA 393 (481)
T ss_pred cccCCcceEEEEeccCceeEeccchhh--cceeeeecccccceeEEEEecCC-c-eeecCC--CceEEEeeeccccCcce
Confidence 99999999999999 799999999953 56788899999999999999875 3 444443 9999999998864 778
Q ss_pred eeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEE----EEeeccccceeEEEECCCC--CEEEEEeCCCcEE
Q psy8285 376 HVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLI----EELKIHQERILSAVLSPDQ--TCVAAASADETIS 449 (507)
Q Consensus 376 ~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~----~~~~~~~~~i~~~~~s~~~--~~l~s~~~dg~i~ 449 (507)
++...++++.++.+..++.|+. .-++..|++||+...+.. ..-++|...|.+++|..+. .-|++++.|..+.
T Consensus 394 TIRtdS~~NRvavs~g~~iIAi--PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~ 471 (481)
T KOG0300|consen 394 TIRTDSPANRVAVSKGHPIIAI--PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVA 471 (481)
T ss_pred eeecCCccceeEeecCCceEEe--ccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceee
Confidence 8888899999999998889988 788899999998654322 1335799999999998653 3578999999999
Q ss_pred EEecCCCC
Q psy8285 450 IWNCFPRD 457 (507)
Q Consensus 450 iw~~~~~~ 457 (507)
=|++....
T Consensus 472 gW~in~p~ 479 (481)
T KOG0300|consen 472 GWKINTPT 479 (481)
T ss_pred eeEecccC
Confidence 99987653
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-24 Score=197.09 Aligned_cols=367 Identities=16% Similarity=0.196 Sum_probs=246.6
Q ss_pred cceeeeeeccCcceeeeccccccccceeeecccCCcce-eeee--cCcccceeeccccccccccCCccCCceeEeecCCc
Q psy8285 7 SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK-CHVK--TDSQVTSILWSEQYRESSRSKMVNTDRYVVDRSSY 83 (507)
Q Consensus 7 ~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~-~~~~--~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 83 (507)
.+|+|||||.+.+. ||.+- .|+.|.|||+..+-+. ..+. ..+.|.+++|++..+...+ ..
T Consensus 26 s~I~slA~s~kS~~-lAvsR--t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~--------------g~ 88 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQ-LAVSR--TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSS--------------GL 88 (691)
T ss_pred cceEEEEEeccCCc-eeeec--cCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEee--------------cC
Confidence 68999999999887 88887 8999999999876433 3343 4788999999844432221 11
Q ss_pred cccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCCCcc
Q psy8285 84 DSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSII 163 (507)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (507)
+..+..|++...+ ....++ .
T Consensus 89 sg~i~EwDl~~lk---------------------------~~~~~d---------------------------------~ 108 (691)
T KOG2048|consen 89 SGSITEWDLHTLK---------------------------QKYNID---------------------------------S 108 (691)
T ss_pred CceEEEEecccCc---------------------------eeEEec---------------------------------C
Confidence 1222222222210 000000 0
Q ss_pred cccceeeeeeCCCC-EEE-EEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc
Q psy8285 164 NDFYTSGLDWGYHD-TLA-VALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE 241 (507)
Q Consensus 164 ~~~~i~~~~~s~~~-~~~-~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~ 241 (507)
....|-+++.+|.+ .++ ++.||.++.++...++......+.. ..+.|.++.|+|++..++.| +.||.|++||...+
T Consensus 109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r-q~sRvLslsw~~~~~~i~~G-s~Dg~Iriwd~~~~ 186 (691)
T KOG2048|consen 109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR-QKSRVLSLSWNPTGTKIAGG-SIDGVIRIWDVKSG 186 (691)
T ss_pred CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc-ccceEEEEEecCCccEEEec-ccCceEEEEEcCCC
Confidence 01124456667765 444 5589988888888887766666655 67899999999999999999 99999999999998
Q ss_pred eeEEEEe-------e-cCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-
Q psy8285 242 RLIQKLR-------T-HMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS- 311 (507)
Q Consensus 242 ~~~~~~~-------~-~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 311 (507)
..+.... . ...-|+++.| ....|++|...|+|.+||...+. .......|...|.+++..+++.++++++
T Consensus 187 ~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT-LiqS~~~h~adVl~Lav~~~~d~vfsaGv 265 (691)
T KOG2048|consen 187 QTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT-LIQSHSCHDADVLALAVADNEDRVFSAGV 265 (691)
T ss_pred ceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc-hhhhhhhhhcceeEEEEcCCCCeEEEccC
Confidence 7766222 1 2334677777 78899999999999999999886 6777888999999999999988888888
Q ss_pred CCcEEEEEcCCCCC-CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC--------------------
Q psy8285 312 NNTVKIWDFRQLDA-KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-------------------- 370 (507)
Q Consensus 312 d~~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-------------------- 370 (507)
|+.|..|....... .........|...|.+++..++ .+++++. |..+.+-..+.
T Consensus 266 d~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~---~l~sgG~--d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~ 340 (691)
T KOG2048|consen 266 DPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN---ALISGGR--DFTLAICSSREFKNMDHRQKNLFPASDRVSV 340 (691)
T ss_pred CCceEEEEecCCccceeeeccccCCcccceeeeeecc---eEEecce--eeEEEEccccccCchhhhccccccccceeec
Confidence 88888887766522 1122233457778888887764 4444432 44444333221
Q ss_pred ----------------------C----C----eee--eeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC-----
Q psy8285 371 ----------------------G----K----EKC--HVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR----- 413 (507)
Q Consensus 371 ----------------------~----~----~~~--~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~----- 413 (507)
. + .+. .++.+..|.+.+.||+|+.|+..+ -..++||.+..
T Consensus 341 a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st---~~~~~iy~L~~~~~vk 417 (691)
T KOG2048|consen 341 APENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAIST---VSRTKIYRLQPDPNVK 417 (691)
T ss_pred CccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEee---ccceEEEEeccCccee
Confidence 1 0 001 112235689999999999999842 12233332211
Q ss_pred ---------------------------------------------ccEEEEee--ccccceeEEEECCCCCEEEEEeCCC
Q psy8285 414 ---------------------------------------------LHLIEELK--IHQERILSAVLSPDQTCVAAASADE 446 (507)
Q Consensus 414 ---------------------------------------------~~~~~~~~--~~~~~i~~~~~s~~~~~l~s~~~dg 446 (507)
++.+..+. +-...|..+..||+|++||+.+.+|
T Consensus 418 ~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g 497 (691)
T KOG2048|consen 418 VINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRG 497 (691)
T ss_pred EEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccc
Confidence 11111111 1234688999999999999999999
Q ss_pred cEEEEecCCCCcccc
Q psy8285 447 TISIWNCFPRDKKRK 461 (507)
Q Consensus 447 ~i~iw~~~~~~~~~~ 461 (507)
.|.+|++.+.+....
T Consensus 498 ~I~v~nl~~~~~~~l 512 (691)
T KOG2048|consen 498 QIFVYNLETLESHLL 512 (691)
T ss_pred eEEEEEcccceeecc
Confidence 999999998765443
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=209.97 Aligned_cols=233 Identities=18% Similarity=0.302 Sum_probs=202.6
Q ss_pred cCCCeEEEEeCCCCcEEEEeCCCce------eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCC-cCceee
Q psy8285 218 PRTTDLAVTNTCTEYIDLWHEQEER------LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHS-DYPTAI 288 (507)
Q Consensus 218 ~~~~~l~~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~ 288 (507)
|.+++|+++ +.||.|++|+..... .+..++.|...|.++.. +++.|++++.|-+|++|+..... .+...+
T Consensus 35 ~~~ryLfTg-GRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti 113 (735)
T KOG0308|consen 35 PNGRYLFTG-GRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI 113 (735)
T ss_pred CCCceEEec-CCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh
Confidence 456779999 999999999986542 35677889999998887 78899999999999999998764 467788
Q ss_pred ecCCCceEEEEE-cCCCCEEEEEe-CCcEEEEEcCCCCC-------CCCeeeec-CCCCCeeEEEEccCCCcEEEEEccC
Q psy8285 289 TREGDVVCGLKW-SPNGRYLASGS-NNTVKIWDFRQLDA-------KRPQVNNQ-CHLSAVKAIAWCPWEPTLLATGGGI 358 (507)
Q Consensus 289 ~~~~~~v~~~~~-~~~~~~l~~~~-d~~i~i~d~~~~~~-------~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~ 358 (507)
..|.+.|.|+++ -++...+|+|+ |+.|.+||++.+.. ......+. ++..+|++++.++.| .++++|+-
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgt- 191 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGT- 191 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCc-
Confidence 899999999999 77888899999 89999999997621 11222233 788899999999988 67777764
Q ss_pred CCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCC
Q psy8285 359 CDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT 437 (507)
Q Consensus 359 ~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~ 437 (507)
++.+++||.++++.+..+.+| ..|..+..++||..+++ ++.||+|++||+...+++.++..|...|+++..+|+-.
T Consensus 192 -ek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls--~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~ 268 (735)
T KOG0308|consen 192 -EKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLS--ASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFT 268 (735)
T ss_pred -ccceEEeccccccceeeeeccccceEEEEEcCCCCeEee--cCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcc
Confidence 999999999999999999988 68999999999999999 88999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEEecCCC
Q psy8285 438 CVAAASADETISIWNCFPR 456 (507)
Q Consensus 438 ~l~s~~~dg~i~iw~~~~~ 456 (507)
.+++|+.||.|..=|+.+.
T Consensus 269 ~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 269 HVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eEEecCCCCcEEecccCCc
Confidence 9999999999999999984
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-26 Score=197.19 Aligned_cols=238 Identities=19% Similarity=0.345 Sum_probs=191.0
Q ss_pred eeeeeeCCCC--EEEE-EcCCeEEEEECCCC--------ceeEEEecCCCCCCceEEEEEccCCC-eEEEEeCCCCcEEE
Q psy8285 168 TSGLDWGYHD--TLAV-ALDTSVYTWNTKTN--------KTQLLVEYPTYDNAYISCVAWKPRTT-DLAVTNTCTEYIDL 235 (507)
Q Consensus 168 i~~~~~s~~~--~~~~-~~~~~i~iw~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~dg~i~i 235 (507)
|+.+.+-|.+ ++|+ +..+.|+|||...- +....+.+.| |...-++++|++... .|+++ +.|+.|.+
T Consensus 127 VnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~g-H~~eg~glsWn~~~~g~Lls~-~~d~~i~l 204 (422)
T KOG0264|consen 127 VNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKG-HEKEGYGLSWNRQQEGTLLSG-SDDHTICL 204 (422)
T ss_pred chhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEe-ecccccccccccccceeEeec-cCCCcEEE
Confidence 4445555544 5554 57889999997652 2223345666 888788899999765 45555 99999999
Q ss_pred EeCCCce-------eEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCC-CCcCceeeecCCCceEEEEEcCC-
Q psy8285 236 WHEQEER-------LIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRT-HSDYPTAITREGDVVCGLKWSPN- 303 (507)
Q Consensus 236 wd~~~~~-------~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~- 303 (507)
||+.... ....+.+|...|..++| +..+|++++.|+.+.|||.++ ...+.....+|.+.|.|++|+|-
T Consensus 205 wdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~ 284 (422)
T KOG0264|consen 205 WDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN 284 (422)
T ss_pred EeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC
Confidence 9997543 34567889999999999 688999999999999999996 33467778899999999999995
Q ss_pred CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC----------
Q psy8285 304 GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK---------- 372 (507)
Q Consensus 304 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---------- 372 (507)
+..||+|+ |++|.+||+|+. .+++..+.+|...|.++.|+|....++++++. |+.+.+||+..-.
T Consensus 285 ~~ilAT~S~D~tV~LwDlRnL--~~~lh~~e~H~dev~~V~WSPh~etvLASSg~--D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 285 EFILATGSADKTVALWDLRNL--NKPLHTFEGHEDEVFQVEWSPHNETVLASSGT--DRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CceEEeccCCCcEEEeechhc--ccCceeccCCCcceEEEEeCCCCCceeEeccc--CCcEEEEeccccccccChhhhcc
Confidence 55678888 899999999987 36899999999999999999999999999886 9999999986422
Q ss_pred ----eeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 373 ----EKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 373 ----~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
++..-.+| ..|..+.|+|+..+++++ .++|+.+.||.+.
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~S-vaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIAS-VAEDNILQIWQMA 404 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEE-ecCCceEEEeecc
Confidence 12233334 579999999999998887 7899999999975
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=195.25 Aligned_cols=239 Identities=16% Similarity=0.210 Sum_probs=192.8
Q ss_pred eeeeeeCCCC---EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 168 TSGLDWGYHD---TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 168 i~~~~~s~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
|.+..|.|+| +++++....++.||+.+.+..++....|.....+.....+|++++|++. +..|.|.+....+++.+
T Consensus 260 i~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~-G~~G~I~lLhakT~eli 338 (514)
T KOG2055|consen 260 IQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIA-GNNGHIHLLHAKTKELI 338 (514)
T ss_pred cceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEc-ccCceEEeehhhhhhhh
Confidence 3345556655 5566778899999999998887777665234567888999999999999 99999999999999998
Q ss_pred EEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecC-CCceEEEEEcCCCCEEEEEeC-CcEEEEEc
Q psy8285 245 QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITRE-GDVVCGLKWSPNGRYLASGSN-NTVKIWDF 320 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~ 320 (507)
..++ -.+.|..+.| +++.|++++.+|.|++||++... +...+... .-.-++++.++++.+||+|++ |.|.|||.
T Consensus 339 ~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~-~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 339 TSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS-CLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred heee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcc-eEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence 8887 5678899999 78999999999999999999875 44444322 223456788899999999998 99999997
Q ss_pred CC---CCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC----CCeEEEEECCCCC
Q psy8285 321 RQ---LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD----SQVTSILWSEQYR 393 (507)
Q Consensus 321 ~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----~~i~~~~~s~~~~ 393 (507)
++ ...++++..+..-...|+++.|+|+. ++++.++...+..+++-.+.+......+... +.++|++|+|.+.
T Consensus 417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG 495 (514)
T KOG2055|consen 417 NSCFASTNPKPIKTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSG 495 (514)
T ss_pred chhhccCCCCchhhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCc
Confidence 64 24567888887778899999999998 6766666567888999998877666555443 5799999999999
Q ss_pred eEEEEeccCCCeEEEEeCC
Q psy8285 394 ELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~ 412 (507)
++++ |.++|.+.+|.+.
T Consensus 496 ~lAv--GNe~grv~l~kL~ 512 (514)
T KOG2055|consen 496 YLAV--GNEAGRVHLFKLH 512 (514)
T ss_pred eEEe--ecCCCceeeEeec
Confidence 9999 9999999999874
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-25 Score=182.51 Aligned_cols=280 Identities=17% Similarity=0.216 Sum_probs=209.0
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEE----EecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLL----VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
...|++++|+.|| +++++.|+.|++|++.+...... ..+ .-+..+.+.|+||-+.+++......++++|.+
T Consensus 86 ~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv---e~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 86 KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV---EYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred CCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc---cCCCceEEEECCCcceEEEEEccCCEEEEEEe
Confidence 3458999999998 77788999999999987543221 122 22357899999999888877456668999976
Q ss_pred CCcee---E---------EEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCC
Q psy8285 239 QEERL---I---------QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNG 304 (507)
Q Consensus 239 ~~~~~---~---------~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 304 (507)
...+. . ..-+.|...+..+-. ++.+|++++.|..|.+|+++ ++ ....+......-+..+.||+|
T Consensus 163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq-~L~~idtnq~~n~~aavSP~G 240 (420)
T KOG2096|consen 163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ-LLQSIDTNQSSNYDAAVSPDG 240 (420)
T ss_pred eecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc-eeeeeccccccccceeeCCCC
Confidence 53211 0 011234555555544 68899999999999999999 33 455666666667788999999
Q ss_pred CEEEEEe-CCcEEEEEcCCC-----CCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC-------C
Q psy8285 305 RYLASGS-NNTVKIWDFRQL-----DAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-------G 371 (507)
Q Consensus 305 ~~l~~~~-d~~i~i~d~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-------~ 371 (507)
+++++++ .-.|++|.+--+ +.......+.+|...|..++|+|+..+++.++- ||++++||+.- .
T Consensus 241 RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk---DG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 241 RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK---DGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec---CCcEEEeeccceEecCCCc
Confidence 9999998 488999986432 233456778899999999999999977776654 99999999752 1
Q ss_pred Ceeeeee-----cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee-ccccceeEEEECCCCCEEEEEeCC
Q psy8285 372 KEKCHVK-----TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK-IHQERILSAVLSPDQTCVAAASAD 445 (507)
Q Consensus 372 ~~~~~~~-----~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~s~~~d 445 (507)
+.++... ..+....+..+|+|+.|+++. ...+++|..++++...++. .|...|.+++|+++|+++++++ |
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~---gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-d 393 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF---GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-D 393 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec---CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-c
Confidence 2222221 124556999999999999854 4579999999988877764 5899999999999999999998 5
Q ss_pred CcEEEEecCCC
Q psy8285 446 ETISIWNCFPR 456 (507)
Q Consensus 446 g~i~iw~~~~~ 456 (507)
..+++..-.++
T Consensus 394 r~vrv~~ntpg 404 (420)
T KOG2096|consen 394 RYVRVIRNTPG 404 (420)
T ss_pred eeeeeecCCCc
Confidence 67888774443
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=193.10 Aligned_cols=222 Identities=16% Similarity=0.270 Sum_probs=183.5
Q ss_pred ceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 167 YTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.+.+++.|+|+ +++++.|..|.||+..+.+..+. +.+ |.+.|.+++|-.....|+++ +.|+.|++|+++....+
T Consensus 204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~--~~g-hr~~V~~L~fr~gt~~lys~-s~Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKV--FKG-HRGAVSSLAFRKGTSELYSA-SADRSVKVWSIDQLSYV 279 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceEEEecCcccchhhc--ccc-cccceeeeeeecCccceeee-ecCCceEEEehhHhHHH
Confidence 35678999998 55667899999999999987766 445 99999999999888889999 99999999999999999
Q ss_pred EEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcC
Q psy8285 245 QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFR 321 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~ 321 (507)
.++.+|+..|..+.- -++.+.+|+.|+++++|++... ....+.++.+.+.|++|-.+ ..+++|+| |.|.+|++.
T Consensus 280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLL 356 (479)
T ss_pred HHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeec
Confidence 999999999999988 4667777779999999999643 46678888999999999865 56778885 999999998
Q ss_pred CCCCCCCeeeec-C-----------CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC----CeeeeeecCCCeEE
Q psy8285 322 QLDAKRPQVNNQ-C-----------HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG----KEKCHVKTDSQVTS 385 (507)
Q Consensus 322 ~~~~~~~~~~~~-~-----------~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~----~~~~~~~~~~~i~~ 385 (507)
+. +++.+.. + +...|++++..|.. .++++++. +|.|++|-+..+ .++..+...+-|++
T Consensus 357 KK---kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s-dL~asGS~--~G~vrLW~i~~g~r~i~~l~~ls~~GfVNs 430 (479)
T KOG0299|consen 357 KK---KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS-DLLASGSW--SGCVRLWKIEDGLRAINLLYSLSLVGFVNS 430 (479)
T ss_pred cc---CceeEeeccccccCCccccccccceeeeEecccC-ceEEecCC--CCceEEEEecCCccccceeeecccccEEEE
Confidence 76 4444332 1 22378999999965 78888876 999999999877 45666666788999
Q ss_pred EEECCCCCeEEEEecc
Q psy8285 386 ILWSEQYRELVTSHGK 401 (507)
Q Consensus 386 ~~~s~~~~~l~~~~g~ 401 (507)
++|+++|+.++++.|-
T Consensus 431 l~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 431 LAFSNSGKRIVAGIGK 446 (479)
T ss_pred EEEccCCCEEEEeccc
Confidence 9999999988886443
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.9e-24 Score=167.33 Aligned_cols=238 Identities=19% Similarity=0.277 Sum_probs=197.9
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC------ce---------eEEEEeecCccEEEEEe--eCCEEEEEec
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE------ER---------LIQKLRTHMHQVIAMCW--NGNLLSCGTI 269 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~------~~---------~~~~~~~~~~~v~~~~~--~~~~l~~~~~ 269 (507)
....|.+++|+|.|...+++ +...+++|-.... +. ..+.-+.|.+.|+|.+| .|.+|++|+.
T Consensus 31 dsqairav~fhp~g~lyavg-snskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVG-SNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred chhheeeEEecCCCceEEec-cCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 56789999999999999998 8888888864321 11 11223458899999999 7999999999
Q ss_pred CCeEEEEECCCCCc----CceeeecCCCceEEEEEcCC----CCEEEEEe--CCcEEEEEcCCCCCCCCeeeecCCCCCe
Q psy8285 270 GGNILHYDVRTHSD----YPTAITREGDVVCGLKWSPN----GRYLASGS--NNTVKIWDFRQLDAKRPQVNNQCHLSAV 339 (507)
Q Consensus 270 dg~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~----~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~v 339 (507)
|.+|++.-.+.... ....+.-|.+.|+.++|..+ +.+|++++ |..|++-|...+ +.+..+.+|.+.|
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g---~~~~a~sghtghi 186 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG---QGFHALSGHTGHI 186 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC---CcceeecCCcccE
Confidence 99999987664331 23456778999999999754 56788877 577777788887 8899999999998
Q ss_pred eEEE-EccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC--------CCeEEEEECCCCCeEEEEeccCCCeEEEEe
Q psy8285 340 KAIA-WCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD--------SQVTSILWSEQYRELVTSHGKQDCSLKMWE 410 (507)
Q Consensus 340 ~~~~-~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--------~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d 410 (507)
.++- |+ ..++++++. |.+|++||++-..++..+... +.+.+++..|.|+.|++ |-.|.+..+||
T Consensus 187 lalyswn---~~m~~sgsq--dktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~s--g~~dssc~lyd 259 (350)
T KOG0641|consen 187 LALYSWN---GAMFASGSQ--DKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLAS--GHADSSCMLYD 259 (350)
T ss_pred EEEEEec---CcEEEccCC--CceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeee--ccCCCceEEEE
Confidence 7763 43 378888876 999999999998888877532 46899999999999999 89999999999
Q ss_pred CCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 411 YPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 411 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
++.+++++.+..|...|.++.|+|...+|++++.|..|++=|++.
T Consensus 260 irg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 260 IRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred eeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 999999999999999999999999999999999999999999974
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=204.91 Aligned_cols=265 Identities=14% Similarity=0.240 Sum_probs=215.3
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCC-ceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTN-KTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.+.++|.|+| +++++.|+.|++|+..+. +....+.. +...|.+++.. +.+|+++ +.+++|.+|.+.+++.-
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~---~g~~v~~ia~~--s~~f~~~-s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI---SGELVSSIACY--SNHFLTG-SEQNTVLRYKFPSGEED 89 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc---cCceeEEEeec--ccceEEe-eccceEEEeeCCCCCcc
Confidence 5678999988 777889999999998765 33333333 45677777764 4588888 99999999999998877
Q ss_pred EEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcC
Q psy8285 245 QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR 321 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~ 321 (507)
..+....-++.++++ +|+++|.|+.|-.|++.++.... ....+.+|..+|.++.|+|++++||+.+ ||.|++||+.
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s-~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS-QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc-hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 777777888999999 67799999999999999998876 6788999999999999999999999998 8999999999
Q ss_pred CCCCCCCeeeecC--------CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECC
Q psy8285 322 QLDAKRPQVNNQC--------HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSE 390 (507)
Q Consensus 322 ~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~ 390 (507)
++ ....++.+ ....+..++|+|++..+++.+. |+.|.+|+..+.+....+... ..+..++|+|
T Consensus 169 ~~---~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~---d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP 242 (933)
T KOG1274|consen 169 DG---ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV---DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP 242 (933)
T ss_pred cc---hhhhhcccCCccccccccceeeeeeecCCCCeEEeecc---CCeEEEEccCCceeheeecccccccceEEEEEcC
Confidence 87 33333221 1345778999999889999887 999999999999988877654 3599999999
Q ss_pred CCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEE
Q psy8285 391 QYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIW 451 (507)
Q Consensus 391 ~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw 451 (507)
+|+|||+ ++.+|.|.|||..+.+. ......|.+++|.|+..-+-.-...|...+|
T Consensus 243 nG~YiAA--s~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 243 NGKYIAA--STLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred CCcEEee--eccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9999999 88999999999987222 2235679999999998866555555554444
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=196.68 Aligned_cols=282 Identities=17% Similarity=0.241 Sum_probs=222.1
Q ss_pred CCCcccccceeeeeeCCCC-EEEEEcCCeEEEEECCCCc---eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEE
Q psy8285 159 APSIINDFYTSGLDWGYHD-TLAVALDTSVYTWNTKTNK---TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYID 234 (507)
Q Consensus 159 ~~~~~~~~~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~ 234 (507)
...+.+...|.++..|... .+-.+..|.|+|||+.... +...+.... ....|.++.+.|||+.|+++ +.-.++.
T Consensus 413 ~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~-rdnyiRSckL~pdgrtLivG-Geastls 490 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLN-RDNYIRSCKLLPDGRTLIVG-GEASTLS 490 (705)
T ss_pred hhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccC-cccceeeeEecCCCceEEec-cccceee
Confidence 3344555567788887654 5555568899999997532 122223322 56789999999999999999 8899999
Q ss_pred EEeCCCceeEEE--EeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEE
Q psy8285 235 LWHEQEERLIQK--LRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASG 310 (507)
Q Consensus 235 iwd~~~~~~~~~--~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 310 (507)
|||+........ +.......++++. |.++.+++..||.|.|||+.+.. ..+.+.+|.+.+.|+..++||..|-+|
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~VrqfqGhtDGascIdis~dGtklWTG 569 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISKDGTKLWTG 569 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-eeecccCCCCCceeEEecCCCceeecC
Confidence 999987544322 2222233334444 78899999999999999999865 788899999999999999999999999
Q ss_pred e-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEEC
Q psy8285 311 S-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWS 389 (507)
Q Consensus 311 ~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s 389 (507)
+ |++|+.||++.+ +.+.... ....|.++..+|.+..+++ |- .++.+.+......+....-.+.+.|.++.|.
T Consensus 570 GlDntvRcWDlreg---rqlqqhd-F~SQIfSLg~cP~~dWlav-GM--ens~vevlh~skp~kyqlhlheScVLSlKFa 642 (705)
T KOG0639|consen 570 GLDNTVRCWDLREG---RQLQQHD-FSSQIFSLGYCPTGDWLAV-GM--ENSNVEVLHTSKPEKYQLHLHESCVLSLKFA 642 (705)
T ss_pred CCccceeehhhhhh---hhhhhhh-hhhhheecccCCCccceee-ec--ccCcEEEEecCCccceeecccccEEEEEEec
Confidence 9 899999999987 5444433 5678999999999966555 43 4888988887655554444455889999999
Q ss_pred CCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 390 EQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 390 ~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
+.|+++++ .+.|+.+..|...-|..+...+ ....|.++..|.|.++++||+.|....+|.+
T Consensus 643 ~cGkwfvS--tGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 643 YCGKWFVS--TGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCceeee--cCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999 5689999999999998888877 4678999999999999999999998888875
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-25 Score=206.88 Aligned_cols=283 Identities=19% Similarity=0.316 Sum_probs=217.3
Q ss_pred eeeeeeCCCC-EEEEEcCCeEEEEECCCCceeE--EEecCCC--CCCceEEEEEccC-CCeEEEEeCCCCcEEEEeCCC-
Q psy8285 168 TSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQL--LVEYPTY--DNAYISCVAWKPR-TTDLAVTNTCTEYIDLWHEQE- 240 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~--~~~~~~~--~~~~v~~~~~~~~-~~~l~~~~~~dg~i~iwd~~~- 240 (507)
.++|.-.++. .+++.....+.+|......... .....+. -.-.+..+.|..- .++||++ +..|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~-s~nG~i~vWdlnk~ 120 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATC-STNGVISVWDLNKS 120 (839)
T ss_pred cceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheee-cCCCcEEEEecCcc
Confidence 3445555654 5555556677777665433221 1111110 1123456778743 4678888 9999999999987
Q ss_pred --ceeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC-CCCEEEEEeC-C
Q psy8285 241 --ERLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP-NGRYLASGSN-N 313 (507)
Q Consensus 241 --~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~d-~ 313 (507)
.+.+..+..|...+.++.| ...+|++|++||.|++||++... -...+.+....|+.++|+| .+..++++.| |
T Consensus 121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 121 IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK-SKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-ccccccccchhhhceeeccCCCceEEEecCCc
Confidence 5666778899999999999 48899999999999999999876 4556667888999999999 4567888887 9
Q ss_pred cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC--eeeeeecCCCeEEEEECCC
Q psy8285 314 TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK--EKCHVKTDSQVTSILWSEQ 391 (507)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~i~~~~~s~~ 391 (507)
.+++||++.. .++...+.+|.++|.++.|+|++ .+|++|+. |+.|+|||..+++ ++.++....++.++.|-|.
T Consensus 200 ~lqlWDlRqp--~r~~~k~~AH~GpV~c~nwhPnr-~~lATGGR--DK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~ 274 (839)
T KOG0269|consen 200 YLQLWDLRQP--DRCEKKLTAHNGPVLCLNWHPNR-EWLATGGR--DKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPA 274 (839)
T ss_pred eEEEeeccCc--hhHHHHhhcccCceEEEeecCCC-ceeeecCC--CccEEEEeccCCCccceeEEeecceeeeeeeccC
Confidence 9999999986 36777888999999999999955 78888876 9999999998664 4556666689999999999
Q ss_pred CCeEEEEe-ccCCCeEEEEeCCCc-cEEEEeeccccceeEEEECC-CCCEEEEEeCCCcEEEEecCCCC
Q psy8285 392 YRELVTSH-GKQDCSLKMWEYPRL-HLIEELKIHQERILSAVLSP-DQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 392 ~~~l~~~~-g~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
.++.++++ -..|-.|+|||++.. -+..++..|...++.++|.. |...|.+++.||+|..-.+.+..
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred ccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 88765542 335778999999764 56678889999999999976 55678999999998876666543
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-24 Score=175.82 Aligned_cols=285 Identities=20% Similarity=0.327 Sum_probs=216.2
Q ss_pred cceeeeeeCCC-C--EEEEEcCCeEEEEECCCCce----------eE--EEecCCCCCCceEEEEEccCCCeEEEEeCCC
Q psy8285 166 FYTSGLDWGYH-D--TLAVALDTSVYTWNTKTNKT----------QL--LVEYPTYDNAYISCVAWKPRTTDLAVTNTCT 230 (507)
Q Consensus 166 ~~i~~~~~s~~-~--~~~~~~~~~i~iw~~~~~~~----------~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d 230 (507)
-.|++++..+. + +++++.||.|.+||+++... .. ..+.+..|.-.|.++.|-|-..-++++++.|
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFD 123 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFD 123 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccccc
Confidence 34667777663 2 88889999999999986431 11 0111222788999999999887777776999
Q ss_pred CcEEEEeCCCceeEEEEeecCccEEEEEe-----eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC
Q psy8285 231 EYIDLWHEQEERLIQKLRTHMHQVIAMCW-----NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR 305 (507)
Q Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 305 (507)
.++++||.++.+....+. .++.|++-++ ...++|+|..+-.|++.|+..+. ....+.+|.+.|.++.|+|...
T Consensus 124 htlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~LsGHr~~vlaV~Wsp~~e 201 (397)
T KOG4283|consen 124 HTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHTLSGHRDGVLAVEWSPSSE 201 (397)
T ss_pred ceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ceeeeccccCceEEEEeccCce
Confidence 999999999987776665 4555665555 46788999999999999999987 7889999999999999999888
Q ss_pred E-EEEEe-CCcEEEEEcCCC------------CCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC
Q psy8285 306 Y-LASGS-NNTVKIWDFRQL------------DAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG 371 (507)
Q Consensus 306 ~-l~~~~-d~~i~i~d~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 371 (507)
+ |++|+ ||.|++||++.. .....++.-..|.+.|..++|..++.+++..+. |..+++|+..+|
T Consensus 202 ~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt---d~r~r~wn~~~G 278 (397)
T KOG4283|consen 202 WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT---DDRIRVWNMESG 278 (397)
T ss_pred eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC---ccceEEeecccC
Confidence 7 55666 899999999864 112233335568899999999999988888877 999999999887
Q ss_pred Ceeee-e---ecC---CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeC
Q psy8285 372 KEKCH-V---KTD---SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 372 ~~~~~-~---~~~---~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 444 (507)
+.... + .++ +.-..+. +-+...++. --.++.+.++++-++..+..+..|-..|.+..+-|+-+...++..
T Consensus 279 ~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~--~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~ 355 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVL--FPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDM 355 (397)
T ss_pred cccccccccccccccccceEEEe-ecccceEEE--EecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcccc
Confidence 63221 1 111 1111123 333333333 234689999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCCCc
Q psy8285 445 DETISIWNCFPRDK 458 (507)
Q Consensus 445 dg~i~iw~~~~~~~ 458 (507)
|+.|..|.....++
T Consensus 356 d~ni~~w~p~l~~p 369 (397)
T KOG4283|consen 356 NGNIYMWSPALKSP 369 (397)
T ss_pred CCccccccccccCC
Confidence 99999999854433
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=195.22 Aligned_cols=236 Identities=17% Similarity=0.252 Sum_probs=199.2
Q ss_pred ccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC
Q psy8285 163 INDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 163 ~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
..+.||.+....||+ +++++.-.++.|||+.........++.. ..-.+.+++.+||.+..+++ ..||.|.|||+.+
T Consensus 463 ~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaelts-sapaCyALa~spDakvcFsc-csdGnI~vwDLhn 540 (705)
T KOG0639|consen 463 NRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTS-SAPACYALAISPDAKVCFSC-CSDGNIAVWDLHN 540 (705)
T ss_pred CcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCC-cchhhhhhhcCCccceeeee-ccCCcEEEEEccc
Confidence 345567777778887 8888898999999998876554444433 44567889999999999998 9999999999999
Q ss_pred ceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC-CcEEE
Q psy8285 241 ERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKI 317 (507)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i 317 (507)
...++.+++|...+.||.. +|..|-+|+-|.+|+.||++++..+. .......|.++.++|++.++++|-. +.+.+
T Consensus 541 q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlq--qhdF~SQIfSLg~cP~~dWlavGMens~vev 618 (705)
T KOG0639|consen 541 QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ--QHDFSSQIFSLGYCPTGDWLAVGMENSNVEV 618 (705)
T ss_pred ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhh--hhhhhhhheecccCCCccceeeecccCcEEE
Confidence 9999999999999999999 69999999999999999999876322 2234578999999999999999995 99998
Q ss_pred EEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEE
Q psy8285 318 WDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVT 397 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (507)
...... ....+.-|..-|.++.|.+.|+.++.+|- |..+..|...-|..+...+..+.|.++.+|.|.+||++
T Consensus 619 lh~skp----~kyqlhlheScVLSlKFa~cGkwfvStGk---DnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVT 691 (705)
T KOG0639|consen 619 LHTSKP----EKYQLHLHESCVLSLKFAYCGKWFVSTGK---DNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVT 691 (705)
T ss_pred EecCCc----cceeecccccEEEEEEecccCceeeecCc---hhhhhhccCccccceeeccccCcceeeeeccCceEEEe
Confidence 887764 44555668999999999999977776665 99999999999998888888899999999999999999
Q ss_pred EeccCCCeEEEEeC
Q psy8285 398 SHGKQDCSLKMWEY 411 (507)
Q Consensus 398 ~~g~~d~~i~v~d~ 411 (507)
|+.|....||.+
T Consensus 692 --GSGdkkATVYeV 703 (705)
T KOG0639|consen 692 --GSGDKKATVYEV 703 (705)
T ss_pred --cCCCcceEEEEE
Confidence 888888877764
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-24 Score=178.04 Aligned_cols=256 Identities=16% Similarity=0.235 Sum_probs=191.3
Q ss_pred CCcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEee
Q psy8285 1 NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVD 79 (507)
Q Consensus 1 ~l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 79 (507)
+.+.|.++|+|||++. +| +|||| .|-+|+|+|+.+...+..+. |.+.|+++.|.+..+
T Consensus 38 ~~~aH~~sitavAVs~--~~-~aSGs--sDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S---------------- 96 (362)
T KOG0294|consen 38 AFSAHAGSITALAVSG--PY-VASGS--SDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS---------------- 96 (362)
T ss_pred cccccccceeEEEecc--ee-EeccC--CCCcEEEEeccchhhhcceeccccceEEEEecCCcc----------------
Confidence 3578999999999976 67 99999 89999999999998888776 777788887753221
Q ss_pred cCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcC
Q psy8285 80 RSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEA 159 (507)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (507)
T Consensus 97 -------------------------------------------------------------------------------- 96 (362)
T KOG0294|consen 97 -------------------------------------------------------------------------------- 96 (362)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC
Q psy8285 160 PSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ 239 (507)
Q Consensus 160 ~~~~~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~ 239 (507)
.+.+++++.||.|.+|+...-+. +..+.+ |.+.|+.++.+|.++..++. +.|+.++.||+-
T Consensus 97 ---------------~shLlS~sdDG~i~iw~~~~W~~--~~slK~-H~~~Vt~lsiHPS~KLALsV-g~D~~lr~WNLV 157 (362)
T KOG0294|consen 97 ---------------KSHLLSGSDDGHIIIWRVGSWEL--LKSLKA-HKGQVTDLSIHPSGKLALSV-GGDQVLRTWNLV 157 (362)
T ss_pred ---------------hhheeeecCCCcEEEEEcCCeEE--eeeecc-cccccceeEecCCCceEEEE-cCCceeeeehhh
Confidence 12489999999999999876644 444555 89999999999999888888 899999999999
Q ss_pred CceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEE
Q psy8285 240 EERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVK 316 (507)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~ 316 (507)
+|+.-..+.-.. ...-+.| .|.+++.+..+ .|-+|.+.+.. ....+ .....+.|+.|.. +..+++|. |+.|.
T Consensus 158 ~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~-v~~~i-~~~~r~l~~~~l~-~~~L~vG~d~~~i~ 232 (362)
T KOG0294|consen 158 RGRVAFVLNLKN-KATLVSWSPQGDHFVVSGRN-KIDIYQLDNAS-VFREI-ENPKRILCATFLD-GSELLVGGDNEWIS 232 (362)
T ss_pred cCccceeeccCC-cceeeEEcCCCCEEEEEecc-EEEEEecccHh-Hhhhh-hccccceeeeecC-CceEEEecCCceEE
Confidence 987655554221 2233778 68888888865 68899988754 22222 2235577777774 45666666 59999
Q ss_pred EEEcCCCCCCCCeeeecCCCCCeeEEEEc--cCCCcEEEEEccCCCCeEEEEeCCCC-----CeeeeeecCCCeEEEE
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLSAVKAIAWC--PWEPTLLATGGGICDQTVRLWNSMNG-----KEKCHVKTDSQVTSIL 387 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~i~~~~ 387 (507)
+||.... .+...+.+|..+|..+.+- |++ +++++++. ||.|++||++.. +++..+..+.+++|+.
T Consensus 233 ~~D~ds~---~~~~~~~AH~~RVK~i~~~~~~~~-~~lvTaSS--DG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~ 304 (362)
T KOG0294|consen 233 LKDTDSD---TPLTEFLAHENRVKDIASYTNPEH-EYLVTASS--DGFIKVWDIDMETKKRPTLLAELNTNVRLTCLR 304 (362)
T ss_pred EeccCCC---ccceeeecchhheeeeEEEecCCc-eEEEEecc--CceEEEEEccccccCCcceeEEeecCCccceee
Confidence 9999986 8899999999999999853 445 55666554 999999999866 3344444444444443
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=186.42 Aligned_cols=238 Identities=18% Similarity=0.267 Sum_probs=205.4
Q ss_pred CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCc
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYP 285 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~ 285 (507)
...+.++...|....++++ +.|..+.++|...++.+..+++|...|+.+.+ +...+++++.|..|++|...... ..
T Consensus 219 ~pgi~ald~~~s~~~ilTG-G~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~ 296 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTG-GEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EP 296 (506)
T ss_pred CCCeeEEeecCCCCcceec-CCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Cc
Confidence 3568888888887788888 99999999999999999999999999999999 57788999999999999998776 56
Q ss_pred eeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecC--CCCCeeEEEEccCCCcEEEEEccCCCCe
Q psy8285 286 TAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQC--HLSAVKAIAWCPWEPTLLATGGGICDQT 362 (507)
Q Consensus 286 ~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~d~~ 362 (507)
.....|..+|+.+..+|.|.||++++ |++..+.|++++ ..+..... ..-.+++.+|+||| .++.++.. |+.
T Consensus 297 ~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g---~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~--d~~ 370 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSG---SQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTP--DGV 370 (506)
T ss_pred cccccccccceeeeeccCCcEEEEecCCceEEEEEccCC---cEEEEEeeccccceeEEeeEcCCc-eEEeccCC--Cce
Confidence 77888999999999999999999999 599999999998 55555442 23458999999999 67777764 999
Q ss_pred EEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc-ccceeEEEECCCCCEEE
Q psy8285 363 VRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH-QERILSAVLSPDQTCVA 440 (507)
Q Consensus 363 i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~ 440 (507)
++|||+.++.....|.+| ++|..++|+.+|-+|++ +.+|+.|++||++..+...++.-. ..++.++.|.+.|.+|+
T Consensus 371 vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat--~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 371 VKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLAT--AADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLG 448 (506)
T ss_pred EEEEEcCCccccccCCCCCCceeEEEeccCceEEEE--EecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEE
Confidence 999999999999999888 79999999999999999 779999999999988877777542 23699999999999999
Q ss_pred EEeCCCcEEEEecCC
Q psy8285 441 AASADETISIWNCFP 455 (507)
Q Consensus 441 s~~~dg~i~iw~~~~ 455 (507)
.++.|=+|++++-.+
T Consensus 449 ~~g~~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 449 IAGSDLQVYICKKKT 463 (506)
T ss_pred eecceeEEEEEeccc
Confidence 998876666666433
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=193.80 Aligned_cols=139 Identities=19% Similarity=0.348 Sum_probs=107.4
Q ss_pred CeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC-------CeeeeeecC-CCeEEEEECCCCC-eEEEEeccCCCeEEE
Q psy8285 338 AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG-------KEKCHVKTD-SQVTSILWSEQYR-ELVTSHGKQDCSLKM 408 (507)
Q Consensus 338 ~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-------~~~~~~~~~-~~i~~~~~s~~~~-~l~~~~g~~d~~i~v 408 (507)
.|+.+.|.|.+..-++++.. ||.|++|.+..+ .+...+..+ ..|+++.|+|--. .|++ .+.|-+|++
T Consensus 629 ~vtDl~WdPFD~~rLAVa~d--dg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~--asyd~Ti~l 704 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATD--DGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAV--ASYDSTIEL 704 (1012)
T ss_pred eeeecccCCCChHHeeeccc--CceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhh--hhccceeee
Confidence 46778888877666666665 999999998754 244455556 6799999999654 4555 788999999
Q ss_pred EeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccc---eeecCCCcceEEeeccCcc
Q psy8285 409 WEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRK---ARQVGSGSSLEFAILKQPV 480 (507)
Q Consensus 409 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 480 (507)
||+.+++....+.+|.+.|.+++|||||+.+++.+.||+|++|+....+.... -......-.+.|+-+...+
T Consensus 705 WDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~v 779 (1012)
T KOG1445|consen 705 WDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIV 779 (1012)
T ss_pred eehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEE
Confidence 99999999999999999999999999999999999999999999987654322 1122334456666655443
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=180.77 Aligned_cols=320 Identities=18% Similarity=0.245 Sum_probs=227.6
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|.||+++|.-++-....+ ++.+++ .|.+.+||.+++|+|+.++. |.+.|.++.|++....+..
T Consensus 144 ~~GHkDGiW~Vaa~~tqp-i~gtAS--ADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lT------------- 207 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQP-ICGTAS--ADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLT------------- 207 (481)
T ss_pred hcccccceeeehhhcCCc-ceeecc--cccceeEEeeccccceeeecccccceeeEEeccccceEEE-------------
Confidence 679999999999877555 699999 99999999999999999988 8999999999875543221
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
...++...+|... .... .+++..|.++... .. .+..
T Consensus 208 -------------aSGD~taHIW~~a------v~~~------------vP~~~a~~~hSsE----------eE---~e~s 243 (481)
T KOG0300|consen 208 -------------ASGDETAHIWKAA------VNWE------------VPSNNAPSDHSSE----------EE---EEHS 243 (481)
T ss_pred -------------ccCCcchHHHHHh------hcCc------------CCCCCCCCCCCch----------hh---hhcc
Confidence 1222233333322 0000 0000111111110 00 0000
Q ss_pred CcccccceeeeeeCCCCEEEE--EcC-CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEe
Q psy8285 161 SIINDFYTSGLDWGYHDTLAV--ALD-TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWH 237 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~~~~~--~~~-~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd 237 (507)
+.. .+ ...+ ..| .+|+ .+++.+.+ |.+.|.+..|...|+.++++ +.|.+-.+||
T Consensus 244 De~----------~~--d~d~~~~sD~~tiR---------vPl~~ltg-H~~vV~a~dWL~gg~Q~vTa-SWDRTAnlwD 300 (481)
T KOG0300|consen 244 DEH----------NR--DTDSSEKSDGHTIR---------VPLMRLTG-HRAVVSACDWLAGGQQMVTA-SWDRTANLWD 300 (481)
T ss_pred ccc----------cc--ccccccccCCceee---------eeeeeeec-cccceEehhhhcCcceeeee-eccccceeee
Confidence 000 00 1111 111 1222 35667777 99999999999999999999 9999999999
Q ss_pred CCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCc
Q psy8285 238 EQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNT 314 (507)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~ 314 (507)
+++++.+..+.+|....+.++- ..+++++++.|.+.++||++..-.....+++|...|+++.|.-+.+ +++|+ |.+
T Consensus 301 VEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrT 379 (481)
T KOG0300|consen 301 VETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRT 379 (481)
T ss_pred eccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCCce
Confidence 9999999999999999988887 6788999999999999999966556778999999999999997764 66777 599
Q ss_pred EEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeee----eecC-CCeEEEEEC
Q psy8285 315 VKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH----VKTD-SQVTSILWS 389 (507)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~----~~~~-~~i~~~~~s 389 (507)
|++||++++ ..++.++. ...+++.++.+..+ .+++.--. ++.|++||+...+..+. -.+| ..++|++|.
T Consensus 380 vKvWdLrNM--RsplATIR-tdS~~NRvavs~g~-~iIAiPhD--NRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ 453 (481)
T KOG0300|consen 380 VKVWDLRNM--RSPLATIR-TDSPANRVAVSKGH-PIIAIPHD--NRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWL 453 (481)
T ss_pred EEEeeeccc--cCcceeee-cCCccceeEeecCC-ceEEeccC--CceEEEEecCCCccccCCcccccccceeeeeeecc
Confidence 999999987 34566665 56788999998755 56666553 78999999966543322 2233 468999998
Q ss_pred CCCC--eEEEEeccCCCeEEEEeCCC
Q psy8285 390 EQYR--ELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 390 ~~~~--~l~~~~g~~d~~i~v~d~~~ 413 (507)
.+-. -|++ ++.|..+.-|++..
T Consensus 454 eehp~cnLft--cGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 454 EEHPACNLFT--CGFDRMVAGWKINT 477 (481)
T ss_pred ccCccccccc--ccccceeeeeEecc
Confidence 6533 3555 56799999998764
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-24 Score=177.69 Aligned_cols=277 Identities=14% Similarity=0.211 Sum_probs=209.5
Q ss_pred eeeeeeCCCC-EEE-EEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 168 TSGLDWGYHD-TLA-VALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 168 i~~~~~s~~~-~~~-~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
-.|+.|++.| ++| ++.+|.|.|||+.+....+.+.. |..+|++++||++|+.|+++ +.|..|.+||+..|.+++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsa---H~~pi~sl~WS~dgr~Llts-S~D~si~lwDl~~gs~l~ 101 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSA---HVRPITSLCWSRDGRKLLTS-SRDWSIKLWDLLKGSPLK 101 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhc---cccceeEEEecCCCCEeeee-cCCceeEEEeccCCCcee
Confidence 5578999988 555 56999999999999876655554 99999999999999999999 999999999999999888
Q ss_pred EEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecC---CCceEEEEEcCCCCEEEEEeC-CcEEEE
Q psy8285 246 KLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITRE---GDVVCGLKWSPNGRYLASGSN-NTVKIW 318 (507)
Q Consensus 246 ~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~d-~~i~i~ 318 (507)
.+. ...+|+...| +.+..++.-.+..-.+-++..+.......... .....+..|.+.|+++++|.. |.+.++
T Consensus 102 rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~ 180 (405)
T KOG1273|consen 102 RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY 180 (405)
T ss_pred EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence 876 6788999999 34444444444445555555432111111111 111233468899999999995 999999
Q ss_pred EcCCCCCCCCeeeecCCC-CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC-------C--eeeeee---cCCCeEE
Q psy8285 319 DFRQLDAKRPQVNNQCHL-SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG-------K--EKCHVK---TDSQVTS 385 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-------~--~~~~~~---~~~~i~~ 385 (507)
|..+. +++..++-.. ..|..+.++..|+.++.-.+ |+.||.|+++.- + +.+.+. ....-.+
T Consensus 181 ~a~t~---e~vas~rits~~~IK~I~~s~~g~~liiNts---DRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ 254 (405)
T KOG1273|consen 181 DAETL---ECVASFRITSVQAIKQIIVSRKGRFLIINTS---DRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK 254 (405)
T ss_pred ecchh---eeeeeeeechheeeeEEEEeccCcEEEEecC---CceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence 99987 6666665444 67889999999987777665 999999998621 1 112221 1235578
Q ss_pred EEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccc-cceeEEEECCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 386 ILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQ-ERILSAVLSPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 386 ~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
++|+.+|.|+++++ .....++||....|.+++.+.|.. .....+.|+|-...+++- ..|.++||.....+
T Consensus 255 ccfs~dgeYv~a~s-~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 255 CCFSGDGEYVCAGS-ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred eeecCCccEEEecc-ccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence 99999999999963 556789999999999999998877 567889999998888877 67899999987544
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=194.20 Aligned_cols=275 Identities=20% Similarity=0.239 Sum_probs=207.4
Q ss_pred CEEEEE-cCCeEEEEECCCCcee----EEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE--Eee
Q psy8285 177 DTLAVA-LDTSVYTWNTKTNKTQ----LLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK--LRT 249 (507)
Q Consensus 177 ~~~~~~-~~~~i~iw~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~--~~~ 249 (507)
.+|+.+ .+|.|.++|....... ++..... |...|..+.|.|....|+++ +.|.++++||+.+.++... +.+
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~a-H~nAifDl~wapge~~lVsa-sGDsT~r~Wdvk~s~l~G~~~~~G 142 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLA-HKNAIFDLKWAPGESLLVSA-SGDSTIRPWDVKTSRLVGGRLNLG 142 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhccccc-ccceeEeeccCCCceeEEEc-cCCceeeeeeeccceeecceeecc
Confidence 377766 8899999998765433 2233334 99999999999966667777 9999999999999988877 889
Q ss_pred cCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCc-------------------C-------ceeeecCCCceEE---
Q psy8285 250 HMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSD-------------------Y-------PTAITREGDVVCG--- 297 (507)
Q Consensus 250 ~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~-------------------~-------~~~~~~~~~~v~~--- 297 (507)
|...+.+++| |...|++|+.||.|.|||++-... + ......+...|.+
T Consensus 143 H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvT 222 (720)
T KOG0321|consen 143 HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVT 222 (720)
T ss_pred cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeE
Confidence 9999999999 789999999999999999975320 0 0011123334444
Q ss_pred EEEcCCCCEEEEEe--CCcEEEEEcCCCCCC-----CCeeeecCC---CCCeeEEEEccCCCcEEEEEccCCCCeEEEEe
Q psy8285 298 LKWSPNGRYLASGS--NNTVKIWDFRQLDAK-----RPQVNNQCH---LSAVKAIAWCPWEPTLLATGGGICDQTVRLWN 367 (507)
Q Consensus 298 ~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~-----~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d 367 (507)
+-+..|...||+++ |+.|++||++..... .....+..| .-.+.++.....|.++++++. |+.|++|+
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt---D~sIy~yn 299 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT---DNSIYFYN 299 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec---CCcEEEEe
Confidence 55667888888877 799999999976211 122222223 345778888888899999998 99999999
Q ss_pred CCCCC--eeeeeecC---CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc-EEEEeeccccceeEEEECCCC-CEEE
Q psy8285 368 SMNGK--EKCHVKTD---SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH-LIEELKIHQERILSAVLSPDQ-TCVA 440 (507)
Q Consensus 368 ~~~~~--~~~~~~~~---~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~s~~~-~~l~ 440 (507)
+.+.. ++..+.++ .....-..+|++.+++. |+.|...++|.+.+.+ ....+.+|...|++++|.|.. .-++
T Consensus 300 m~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S--gSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~ 377 (720)
T KOG0321|consen 300 MRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS--GSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVA 377 (720)
T ss_pred ccccCcCchhhccCcccceeeeeeecCCCCceEec--cCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCce
Confidence 98653 33344333 22334567999999999 8999999999998764 456678999999999999843 3577
Q ss_pred EEeCCCcEEEEecCCCCc
Q psy8285 441 AASADETISIWNCFPRDK 458 (507)
Q Consensus 441 s~~~dg~i~iw~~~~~~~ 458 (507)
++++|..++||++.++-.
T Consensus 378 TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 378 TCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred eeccCcceEEEeccCchh
Confidence 889999999999976543
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=174.16 Aligned_cols=244 Identities=16% Similarity=0.323 Sum_probs=196.1
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc---eeEEEEeecCccEEEEEe----eCCEEEEEecCCeEEEEECC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE---RLIQKLRTHMHQVIAMCW----NGNLLSCGTIGGNILHYDVR 279 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~ 279 (507)
|.+.|..+...--|++|+++ +.|++|+|+..++. +++.++.+|.++|+.++| -|.+||+++.||.|.||.-.
T Consensus 10 H~D~IHda~lDyygkrlATc-sSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~ 88 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKRLATC-SSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE 88 (299)
T ss_pred hhhhhhHhhhhhhcceeeee-cCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence 88889888888889999999 99999999998764 567889999999999999 48999999999999999988
Q ss_pred CCCc-CceeeecCCCceEEEEEcCC--CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccC---C----
Q psy8285 280 THSD-YPTAITREGDVVCGLKWSPN--GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW---E---- 348 (507)
Q Consensus 280 ~~~~-~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~---- 348 (507)
+++- .......|...|++++|.|. |-.|++++ ||.|.+.+.+.............|.-.|++++|.|. |
T Consensus 89 ~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~ 168 (299)
T KOG1332|consen 89 NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVD 168 (299)
T ss_pred CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccc
Confidence 7642 23455678999999999985 45677777 899999999875333444556679999999999986 3
Q ss_pred ------CcEEEEEccCCCCeEEEEeCCCCC--eeeeeecC-CCeEEEEECCCC----CeEEEEeccCCCeEEEEeCCCc-
Q psy8285 349 ------PTLLATGGGICDQTVRLWNSMNGK--EKCHVKTD-SQVTSILWSEQY----RELVTSHGKQDCSLKMWEYPRL- 414 (507)
Q Consensus 349 ------~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~-~~i~~~~~s~~~----~~l~~~~g~~d~~i~v~d~~~~- 414 (507)
.+-+++++ .|..|+||+..+++ ..+.+..| ..++.++|.|.- .+|++ +++||.+.||..+..
T Consensus 169 ~~~~~~~krlvSgG--cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS--~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 169 QGPAAKVKRLVSGG--CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS--CSQDGTVIIWTKDEEY 244 (299)
T ss_pred cCcccccceeeccC--CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE--ecCCCcEEEEEecCcc
Confidence 13366665 49999999998763 34456666 679999999974 45777 899999999987632
Q ss_pred c--EEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 415 H--LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 415 ~--~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
+ ....+......+..+.||+.|..|+.++.|+.|.+|.-..
T Consensus 245 e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 245 EPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred CcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 1 1222334567899999999999999999999999998653
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-24 Score=187.94 Aligned_cols=264 Identities=14% Similarity=0.168 Sum_probs=206.5
Q ss_pred EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEE
Q psy8285 178 TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIA 256 (507)
Q Consensus 178 ~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 256 (507)
++++. ....|.+|.+........... -.++|.+++-+|+|.+|+.+ +..|.+++|.+.+|.++..+..|-..|++
T Consensus 53 llsaq~~rp~l~vw~i~k~~~~~q~~v---~Pg~v~al~s~n~G~~l~ag-~i~g~lYlWelssG~LL~v~~aHYQ~ITc 128 (476)
T KOG0646|consen 53 LLSAQLKRPLLHVWEILKKDQVVQYIV---LPGPVHALASSNLGYFLLAG-TISGNLYLWELSSGILLNVLSAHYQSITC 128 (476)
T ss_pred eeeecccCccccccccCchhhhhhhcc---cccceeeeecCCCceEEEee-cccCcEEEEEeccccHHHHHHhhccceeE
Confidence 44443 455788998866544332222 45689999999999998887 89999999999999999999999999999
Q ss_pred EEe--eCCEEEEEecCCeEEEEECCC--------CCcCceeeecCCCceEEEEEcCC--CCEEEEEe-CCcEEEEEcCCC
Q psy8285 257 MCW--NGNLLSCGTIGGNILHYDVRT--------HSDYPTAITREGDVVCGLKWSPN--GRYLASGS-NNTVKIWDFRQL 323 (507)
Q Consensus 257 ~~~--~~~~l~~~~~dg~i~i~d~~~--------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~ 323 (507)
+.| |+.+|++|+.||.|.+|.+.. ...+...+..|.-+|+++...+- ..++++++ |.++++||+..+
T Consensus 129 L~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 129 LKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred EEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence 999 799999999999999998743 12356778899999999988764 35688888 899999999988
Q ss_pred CCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC----------------eeeeeecC-C--CeE
Q psy8285 324 DAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK----------------EKCHVKTD-S--QVT 384 (507)
Q Consensus 324 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~----------------~~~~~~~~-~--~i~ 384 (507)
..+.++. ....+.+++.+|.+..+ .+|++ +|.|.+.++.... .+..+.++ + .|+
T Consensus 209 ---~LLlti~-fp~si~av~lDpae~~~-yiGt~--~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT 281 (476)
T KOG0646|consen 209 ---VLLLTIT-FPSSIKAVALDPAERVV-YIGTE--EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT 281 (476)
T ss_pred ---eeeEEEe-cCCcceeEEEcccccEE-EecCC--cceEEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence 6666655 67789999999987544 44544 9999998875432 23333444 3 799
Q ss_pred EEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEE-EeCCCcEEEEecC
Q psy8285 385 SILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAA-ASADETISIWNCF 454 (507)
Q Consensus 385 ~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s-~~~dg~i~iw~~~ 454 (507)
|++++-||..|++ |+.||.++|||+.+.++++++..-.++|+.+.+.|-.+-.+. -.....+-.|++.
T Consensus 282 cLais~DgtlLlS--Gd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lk 350 (476)
T KOG0646|consen 282 CLAISTDGTLLLS--GDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHLK 350 (476)
T ss_pred EEEEecCccEEEe--eCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccceecccccCccCCchHhh
Confidence 9999999999999 999999999999999999988867889999999775443333 3334455556554
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=173.17 Aligned_cols=235 Identities=23% Similarity=0.376 Sum_probs=188.8
Q ss_pred eeeCCCCEEEEEcCCeEEEEECCCCce-eEEEecCCCCCCceEEEEEcc--CCCeEEEEeCCCCcEEEEeCCCcee--EE
Q psy8285 171 LDWGYHDTLAVALDTSVYTWNTKTNKT-QLLVEYPTYDNAYISCVAWKP--RTTDLAVTNTCTEYIDLWHEQEERL--IQ 245 (507)
Q Consensus 171 ~~~s~~~~~~~~~~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~dg~i~iwd~~~~~~--~~ 245 (507)
+++....++++++|+.|+|+..++... ..+.++.| |.++|..++|.. -|..||++ +.||.|.||.-.+++- ..
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G-h~GPVwqv~wahPk~G~iLASc-sYDgkVIiWke~~g~w~k~~ 96 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG-HSGPVWKVAWAHPKFGTILASC-SYDGKVIIWKEENGRWTKAY 96 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecC-CCCCeeEEeecccccCcEeeEe-ecCceEEEEecCCCchhhhh
Confidence 555566688999999999999987665 67788888 999999999976 68899998 9999999999888743 33
Q ss_pred EEeecCccEEEEEe----eCCEEEEEecCCeEEEEECCCCC--cCceeeecCCCceEEEEEcCC---C-----------C
Q psy8285 246 KLRTHMHQVIAMCW----NGNLLSCGTIGGNILHYDVRTHS--DYPTAITREGDVVCGLKWSPN---G-----------R 305 (507)
Q Consensus 246 ~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~---~-----------~ 305 (507)
....|...|++++| -|-.|++++.||.|.|.+.+... ........|.-.|++++|.|. | +
T Consensus 97 e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~k 176 (299)
T KOG1332|consen 97 EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVK 176 (299)
T ss_pred hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccc
Confidence 45679999999999 37799999999999999988652 234566789999999999985 4 5
Q ss_pred EEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCC---CcEEEEEccCCCCeEEEEeCCCCCee--eee--
Q psy8285 306 YLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWE---PTLLATGGGICDQTVRLWNSMNGKEK--CHV-- 377 (507)
Q Consensus 306 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~-- 377 (507)
.|++|+ |+.|+||+...+ ....-.++.+|.+.|+.++|.|.- ...+++++. ||++.||..+..... .++
T Consensus 177 rlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq--Dg~viIwt~~~e~e~wk~tll~ 253 (299)
T KOG1332|consen 177 RLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ--DGTVIIWTKDEEYEPWKKTLLE 253 (299)
T ss_pred eeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecC--CCcEEEEEecCccCcccccccc
Confidence 688888 899999999876 223445588999999999999964 345777765 999999987632111 111
Q ss_pred ecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 378 KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 378 ~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
..+..+..+.||+.|+.|++ +..|+.|.+|.-.
T Consensus 254 ~f~~~~w~vSWS~sGn~LaV--s~GdNkvtlwke~ 286 (299)
T KOG1332|consen 254 EFPDVVWRVSWSLSGNILAV--SGGDNKVTLWKEN 286 (299)
T ss_pred cCCcceEEEEEeccccEEEE--ecCCcEEEEEEeC
Confidence 12357999999999999999 6679999999743
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-24 Score=185.55 Aligned_cols=276 Identities=13% Similarity=0.189 Sum_probs=213.7
Q ss_pred ceeeeeeCCCC--EEEEEcCCeEEEEECCCCce--eEEEecCCCCCCceEEEEEccCCC-eEEEEeCCCCcEEEEeCCCc
Q psy8285 167 YTSGLDWGYHD--TLAVALDTSVYTWNTKTNKT--QLLVEYPTYDNAYISCVAWKPRTT-DLAVTNTCTEYIDLWHEQEE 241 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~dg~i~iwd~~~~ 241 (507)
.|+++.|+|.. +++++.|+.++||.+..... .+.+.+ ...+|.+.+|.|+|. .++++ +....++.||+.+.
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l---~~fPi~~a~f~p~G~~~i~~s-~rrky~ysyDle~a 290 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL---EKFPIQKAEFAPNGHSVIFTS-GRRKYLYSYDLETA 290 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee---ccCccceeeecCCCceEEEec-ccceEEEEeecccc
Confidence 48999999987 78889999999999865433 333344 568999999999998 67777 89999999999987
Q ss_pred eeEEE--EeecCc-cE--EEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 242 RLIQK--LRTHMH-QV--IAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 242 ~~~~~--~~~~~~-~v--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
+..+. ..++.. .+ ..++-++++|+..+..|.|.+....+++ ....+. ..+.|..++|+.|++.|++.+ +|.|
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e-li~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV 368 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE-LITSFK-IEGVVSDFTFSSDSKELLASGGTGEV 368 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh-hhheee-eccEEeeEEEecCCcEEEEEcCCceE
Confidence 65432 333332 22 2344489999999999999999998876 333333 457899999999999877766 7999
Q ss_pred EEEEcCCCCCCCCeeeecCCCC-CeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC------CCeeeeeecC-CCeEEEE
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLS-AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN------GKEKCHVKTD-SQVTSIL 387 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~------~~~~~~~~~~-~~i~~~~ 387 (507)
.+||++.. .++..+....+ .-++++.++++ .++++|+. .|.|.|||..+ .+++..+..- ..|++++
T Consensus 369 ~v~nl~~~---~~~~rf~D~G~v~gts~~~S~ng-~ylA~GS~--~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~ 442 (514)
T KOG2055|consen 369 YVWNLRQN---SCLHRFVDDGSVHGTSLCISLNG-SYLATGSD--SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQ 442 (514)
T ss_pred EEEecCCc---ceEEEEeecCccceeeeeecCCC-ceEEeccC--cceEEEeccchhhccCCCCchhhhhhhheeeeeee
Confidence 99999987 77777763222 23567777888 47788775 89999999653 3455555433 6799999
Q ss_pred ECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc---ccceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 388 WSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH---QERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 388 ~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
|+||.+.|+.++-.....+++-.+.+......+... -+.|++++|||.+.+||.|..+|.+.+|.+.
T Consensus 443 Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 443 FNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999999999865556788999999887776666543 3568999999999999999999999999974
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-24 Score=186.28 Aligned_cols=281 Identities=20% Similarity=0.273 Sum_probs=210.5
Q ss_pred ceeeeeeCCCC---EEEE-EcCCeEEEEECCCCc--eeEEEecCCCCCCceEEEEEccCCC-eEEEEeCCCCcEEEEeCC
Q psy8285 167 YTSGLDWGYHD---TLAV-ALDTSVYTWNTKTNK--TQLLVEYPTYDNAYISCVAWKPRTT-DLAVTNTCTEYIDLWHEQ 239 (507)
Q Consensus 167 ~i~~~~~s~~~---~~~~-~~~~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~dg~i~iwd~~ 239 (507)
.|.+++|+|.. ++++ ...|+|-+||+.+.+ ......+.. |..+|.++.|+|.+. .++++ +.||+|++-|++
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s~i~ss-SyDGtiR~~D~~ 265 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTSQIYSS-SYDGTIRLQDFE 265 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChhheeee-ccCceeeeeeec
Confidence 37899999953 5555 488999999995322 223334444 999999999999774 55555 999999999998
Q ss_pred CceeEEEEee--cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC-EEEEEe-CC
Q psy8285 240 EERLIQKLRT--HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR-YLASGS-NN 313 (507)
Q Consensus 240 ~~~~~~~~~~--~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~ 313 (507)
+...-..+.. ....+..+.| +...++.+..-|...+||+++.......+.-|+..|++++++|... ++++++ |+
T Consensus 266 ~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~ 345 (498)
T KOG4328|consen 266 GNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQ 345 (498)
T ss_pred chhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCc
Confidence 7643333332 3444556666 4556667777779999999998766777888899999999999665 577888 79
Q ss_pred cEEEEEcCCCCCCC-CeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeC----CCCCeeeeeecCC------C
Q psy8285 314 TVKIWDFRQLDAKR-PQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNS----MNGKEKCHVKTDS------Q 382 (507)
Q Consensus 314 ~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~----~~~~~~~~~~~~~------~ 382 (507)
+.+|||++...... ++.....|...|.+..|||.+..+++++. |..|+|||. ....+..++.+.. .
T Consensus 346 T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~---D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT 422 (498)
T KOG4328|consen 346 TAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ---DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLT 422 (498)
T ss_pred ceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc---CCceEEeecccccccCCccceeeccCccccccc
Confidence 99999999864444 34555569999999999999999877776 999999998 3445666666542 3
Q ss_pred eEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecccc-ceeE-EEECCCCCEEEE-EeCCCcEEEEecC
Q psy8285 383 VTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQE-RILS-AVLSPDQTCVAA-ASADETISIWNCF 454 (507)
Q Consensus 383 i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~-~i~~-~~~s~~~~~l~s-~~~dg~i~iw~~~ 454 (507)
.....|.|+..++++ |..-..|-|||-..++.+.++..... .|.+ ..|+|-+..+++ ++..|.|+||--.
T Consensus 423 ~fKA~W~P~~~li~v--g~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 423 PFKAAWDPDYNLIVV--GRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred chhheeCCCccEEEE--eccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 556789999999999 78888899999988887887654332 4544 479998875555 4566888888643
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=192.01 Aligned_cols=213 Identities=15% Similarity=0.242 Sum_probs=179.3
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAM 257 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 257 (507)
++.++.|..+.+|.....++. ..+.| |...|.++....++. ++++ +.|.++++|-. +++...+++|+..|+++
T Consensus 74 l~~g~~D~~i~v~~~~~~~P~--~~Lkg-H~snVC~ls~~~~~~-~iSg-SWD~TakvW~~--~~l~~~l~gH~asVWAv 146 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAEPL--YTLKG-HKSNVCSLSIGEDGT-LISG-SWDSTAKVWRI--GELVYSLQGHTASVWAV 146 (745)
T ss_pred eEeecccceEEEEecCCCCch--hhhhc-cccceeeeecCCcCc-eEec-ccccceEEecc--hhhhcccCCcchheeee
Confidence 778889999999999877754 45556 999999999887776 7888 99999999975 45666799999999999
Q ss_pred Ee-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCC
Q psy8285 258 CW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHL 336 (507)
Q Consensus 258 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 336 (507)
.. ..+.+++|+.|.+|++|.-. ...+.+.+|.+-|+.+++-+++.++-++.||.|++|++. + ..+....+|.
T Consensus 147 ~~l~e~~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~-g---e~l~~~~ght 219 (745)
T KOG0301|consen 147 ASLPENTYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD-G---EVLLEMHGHT 219 (745)
T ss_pred eecCCCcEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc-C---ceeeeeeccc
Confidence 88 56699999999999999864 367889999999999999998776666668999999995 4 7899999999
Q ss_pred CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC-CeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 337 SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS-QVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 337 ~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
.-+++++..+++. +++++++ |++++||+.. ++.+.+..+. .++++.+-++|..++ |+.||.|+||...
T Consensus 220 n~vYsis~~~~~~-~Ivs~gE--DrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvv---g~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 220 NFVYSISMALSDG-LIVSTGE--DRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVV---GGSDGRVRVFTVD 288 (745)
T ss_pred eEEEEEEecCCCC-eEEEecC--CceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEE---eccCceEEEEEec
Confidence 9999999666663 5555554 9999999976 8888888884 899999988887555 5679999999875
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=192.22 Aligned_cols=239 Identities=14% Similarity=0.222 Sum_probs=191.1
Q ss_pred ccceeeeeeCCCC-EEE-EEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccC---CCeEEEEeCCCCcEEEEeCC
Q psy8285 165 DFYTSGLDWGYHD-TLA-VALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR---TTDLAVTNTCTEYIDLWHEQ 239 (507)
Q Consensus 165 ~~~i~~~~~s~~~-~~~-~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~dg~i~iwd~~ 239 (507)
.+-+.+++.||++ .+| +-..|.+++|++...+....++. |+..|.|+.|+.. .++||++ +.|..|+|||+.
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA---HesEilcLeyS~p~~~~kLLASa-srdRlIHV~Dv~ 534 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEA---HESEILCLEYSFPVLTNKLLASA-SRDRLIHVYDVK 534 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhhhhhheec---ccceeEEEeecCchhhhHhhhhc-cCCceEEEEecc
Confidence 4568899999998 444 44789999999988776555544 9999999999853 3567777 999999999986
Q ss_pred Cc-eeEEEEeecCccEEEEEe--eC--CEEEEEecCCeEEEEECCCCCcCceeee-----cCCCceEEEEEcCCCCEEEE
Q psy8285 240 EE-RLIQKLRTHMHQVIAMCW--NG--NLLSCGTIGGNILHYDVRTHSDYPTAIT-----REGDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 240 ~~-~~~~~~~~~~~~v~~~~~--~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~ 309 (507)
.. .+++++.+|...|+++.| +| ..+++++.|..|.+ +......-...+. ..+..++.++..|..+++++
T Consensus 535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t 613 (1080)
T KOG1408|consen 535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT 613 (1080)
T ss_pred cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCCcceEEE
Confidence 54 567888999999999999 43 67889999987754 3332111111222 22456899999999999999
Q ss_pred Ee-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEE
Q psy8285 310 GS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSIL 387 (507)
Q Consensus 310 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~ 387 (507)
++ |..|+|||++.++..+..+.-.+|.+....+...|.|-++..+++ |+++.++|..+++++..+.+| ..|+.+.
T Consensus 614 ~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs---dktl~~~Df~sgEcvA~m~GHsE~VTG~k 690 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS---DKTLCFVDFVSGECVAQMTGHSEAVTGVK 690 (1080)
T ss_pred EecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec---CCceEEEEeccchhhhhhcCcchheeeee
Confidence 99 799999999999444444444567788889999999988888777 999999999999999999888 5699999
Q ss_pred ECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 388 WSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 388 ~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
|.+|-++|+. .+.||.|.||.+..
T Consensus 691 F~nDCkHlIS--vsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 691 FLNDCKHLIS--VSGDGCIFVWKLPL 714 (1080)
T ss_pred ecccchhhee--ecCCceEEEEECch
Confidence 9999999999 67799999999853
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-23 Score=169.45 Aligned_cols=242 Identities=15% Similarity=0.318 Sum_probs=186.1
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc----eeEEEEeecCccEEEEEe----eCCEEEEEecCCeEEEEEC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE----RLIQKLRTHMHQVIAMCW----NGNLLSCGTIGGNILHYDV 278 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~ 278 (507)
|.+-|.++.|.+.|+++|++ +.|++|+|||.... .+....+.|.+.|..+.| -|+.+|+++.|+++.||.-
T Consensus 12 h~DlihdVs~D~~GRRmAtC-SsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 12 HKDLIHDVSFDFYGRRMATC-SSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred CcceeeeeeecccCceeeec-cCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 88889999999999999999 99999999996533 456677889999999999 3999999999999999986
Q ss_pred CCCC--------cCceeeecCCCceEEEEEcCC--CCEEEEEe-CCcEEEEEcCCCCCC---CCee-------eecCCCC
Q psy8285 279 RTHS--------DYPTAITREGDVVCGLKWSPN--GRYLASGS-NNTVKIWDFRQLDAK---RPQV-------NNQCHLS 337 (507)
Q Consensus 279 ~~~~--------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~---~~~~-------~~~~~~~ 337 (507)
.... .....+......|+.+.|.|. |-.+|+++ ||.++||+.-..... .... ....+..
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~ 170 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQ 170 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccC
Confidence 3211 123455667788999999994 56778887 799999987654111 1111 1123566
Q ss_pred CeeEEEEccC--CCcEEEEEccCCCC------eEEEEeCCCCC----eeeeeecC-CCeEEEEECCC----CCeEEEEec
Q psy8285 338 AVKAIAWCPW--EPTLLATGGGICDQ------TVRLWNSMNGK----EKCHVKTD-SQVTSILWSEQ----YRELVTSHG 400 (507)
Q Consensus 338 ~v~~~~~~~~--~~~~~~~~~~~~d~------~i~i~d~~~~~----~~~~~~~~-~~i~~~~~s~~----~~~l~~~~g 400 (507)
+..|+.|+|. .+.+++.++ |. .++||....+. .+..+..+ .+|+.++|.|+ ...||+ +
T Consensus 171 ~~~CvsWn~sr~~~p~iAvgs---~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv--A 245 (361)
T KOG2445|consen 171 PCFCVSWNPSRMHEPLIAVGS---DEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV--A 245 (361)
T ss_pred cceEEeeccccccCceEEEEc---ccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE--e
Confidence 7889999974 235777776 44 78888765432 23344444 78999999997 345666 7
Q ss_pred cCCCeEEEEeCCCc--------------------cEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 401 KQDCSLKMWEYPRL--------------------HLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 401 ~~d~~i~v~d~~~~--------------------~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
+.|| |+||++... +.+..+..|.+.|+.+.|+-.|..|++.+.||.|++|...-
T Consensus 246 ~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred ecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 8899 999998631 24556778999999999999999999999999999998763
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=184.56 Aligned_cols=258 Identities=16% Similarity=0.301 Sum_probs=208.1
Q ss_pred eeeeeeCCCC-EEEE--EcCCeEEEEECCC--CceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 168 TSGLDWGYHD-TLAV--ALDTSVYTWNTKT--NKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 168 i~~~~~s~~~-~~~~--~~~~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
+.++.|+..+ ++++ +.|..+++|.-.. ++...+....| ..-.|++......+++++ +..+.|+|||++...
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g---d~~~Cv~~~s~S~y~~sg-G~~~~Vkiwdl~~kl 112 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG---DNAFCVACASQSLYEISG-GQSGCVKIWDLRAKL 112 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc---chHHHHhhhhcceeeecc-CcCceeeehhhHHHH
Confidence 5578999887 4444 3678889997533 23444444433 244555555556888888 899999999999877
Q ss_pred eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEE-EeC-CcEEEE
Q psy8285 243 LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLAS-GSN-NTVKIW 318 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d-~~i~i~ 318 (507)
+.+.+.+|...|+++.+ .+.+||+++..|.|.|..+.++......-.+....|+-+.|+|..+++++ ++| |.|.+|
T Consensus 113 ~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 113 IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred HhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence 88889999999999999 57899999999999999999876333333333566778999998887554 556 999999
Q ss_pred EcCCCCCCCCee-eecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEE
Q psy8285 319 DFRQLDAKRPQV-NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVT 397 (507)
Q Consensus 319 d~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (507)
|+... .++. ....|..+...++|+|..+.++++-+ +|+.|.+||.+..+....+....+...++|+++|.+|++
T Consensus 193 Dv~g~---sp~~~~~~~HsAP~~gicfspsne~l~vsVG--~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~a 267 (673)
T KOG4378|consen 193 DVQGM---SPIFHASEAHSAPCRGICFSPSNEALLVSVG--YDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCA 267 (673)
T ss_pred eccCC---CcccchhhhccCCcCcceecCCccceEEEec--ccceEEEeecccccccceeeecCCcceeeecCCceEEEe
Confidence 99876 4443 44669999999999999988888877 599999999998888888888899999999999999999
Q ss_pred EeccCCCeEEEEeCCC-ccEEEEeeccccceeEEEECCCC
Q psy8285 398 SHGKQDCSLKMWEYPR-LHLIEELKIHQERILSAVLSPDQ 436 (507)
Q Consensus 398 ~~g~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~~~~s~~~ 436 (507)
|...|.|..||++. ..++..+..|...|++++|-|..
T Consensus 268 --G~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 268 --GNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred --ecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 89999999999986 46788899999999999997764
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.1e-23 Score=168.26 Aligned_cols=236 Identities=19% Similarity=0.310 Sum_probs=180.7
Q ss_pred ccceeeeeeCC--CC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCC---CeEEEEeCCCCcEEEEeC
Q psy8285 165 DFYTSGLDWGY--HD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRT---TDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 165 ~~~i~~~~~s~--~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~dg~i~iwd~ 238 (507)
.+.|..+.|-| .| +.+++.|.++++||..+.+....+.+ ++.|.+-+++|-. .++|++ ..+-.|++-|+
T Consensus 101 ky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m----e~~VYshamSp~a~sHcLiA~g-tr~~~VrLCDi 175 (397)
T KOG4283|consen 101 KYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM----EGKVYSHAMSPMAMSHCLIAAG-TRDVQVRLCDI 175 (397)
T ss_pred eeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec----CceeehhhcChhhhcceEEEEe-cCCCcEEEEec
Confidence 45577788888 35 55667999999999999888777775 4578888898853 355555 88999999999
Q ss_pred CCceeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCc--------------eeeecCCCceEEEEEc
Q psy8285 239 QEERLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYP--------------TAITREGDVVCGLKWS 301 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~--------------~~~~~~~~~v~~~~~~ 301 (507)
.+|..-..+.+|...|.++.| +.-.|++|+.||.|++||++....+. +....|.+.+..++|+
T Consensus 176 ~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 176 ASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred cCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 999999999999999999999 35579999999999999998653221 2234577889999999
Q ss_pred CCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCC---eeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeee
Q psy8285 302 PNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSA---VKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHV 377 (507)
Q Consensus 302 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 377 (507)
.++.++++++ |..+++|+..++...........|... -..+. +.+...++..-. ++.+.++++-.+..+..+
T Consensus 256 Sd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~---~~~lall~~~sgs~ir~l 331 (397)
T KOG4283|consen 256 SDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPN---DGSLALLNLLEGSFVRRL 331 (397)
T ss_pred ccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEec---CCeEEEEEccCceEEEee
Confidence 9999999988 799999999887322111111111111 11122 223323333333 799999999999999999
Q ss_pred ecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeC
Q psy8285 378 KTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEY 411 (507)
Q Consensus 378 ~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~ 411 (507)
..+ ..+.+..+-|+-+...+ |..|+.|..|-.
T Consensus 332 ~~h~k~i~c~~~~~~fq~~~t--g~~d~ni~~w~p 364 (397)
T KOG4283|consen 332 STHLKRINCAAYRPDFEQCFT--GDMNGNIYMWSP 364 (397)
T ss_pred ecccceeeEEeecCchhhhhc--cccCCccccccc
Confidence 888 67899999999999999 999999999976
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-24 Score=196.83 Aligned_cols=242 Identities=18% Similarity=0.379 Sum_probs=195.5
Q ss_pred eeeeeeCCC--C-EEEEEcCCeEEEEECCCCc-eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 168 TSGLDWGYH--D-TLAVALDTSVYTWNTKTNK-TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 168 i~~~~~s~~--~-~~~~~~~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
.+-+.|+.. + +++++..|.|.+||+.... ...+..+.. |...+.++.|++...+++.+|+.||.|++||++..+.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E-H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE-HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhh-hccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 445888852 3 5556799999999998722 222233444 9999999999998877777779999999999999999
Q ss_pred EEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8285 244 IQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d 319 (507)
..++.+....|.++.| .+..|+++...|.+.+||++....+...+..|.++|.|+.|+|++.+||+|+ |++|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 9999999999999999 5889999999999999999998888889999999999999999999999999 79999999
Q ss_pred cCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC-eeeeeecC-CCeEEEEECCCCC-eEE
Q psy8285 320 FRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKTD-SQVTSILWSEQYR-ELV 396 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~-~~i~~~~~s~~~~-~l~ 396 (507)
+.... ..++.++. ...+|.+++|-|...+.|++++--.|-.|+|||++..- +..++..| ..++.++|..... .+.
T Consensus 249 ~t~~~-~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~ 326 (839)
T KOG0269|consen 249 MTDSR-AKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLW 326 (839)
T ss_pred ccCCC-ccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeE
Confidence 98652 23444443 56789999999999888888875568899999998764 44566666 5688899976444 444
Q ss_pred EEeccCCCeEEEEeCCCc
Q psy8285 397 TSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 397 ~~~g~~d~~i~v~d~~~~ 414 (507)
+ ++.|+.|..-.+++.
T Consensus 327 s--~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 327 S--CSKDGTVLQHLFKNA 342 (839)
T ss_pred e--ecCccHHHHhhhhcc
Confidence 4 788888876655544
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=175.99 Aligned_cols=195 Identities=24% Similarity=0.406 Sum_probs=159.8
Q ss_pred eCCEEEEEecCCeEEEEECCCC---------------CcCceeeecCCCceEEEEEcCCC-CEEEEEe-CCcEEEEEcCC
Q psy8285 260 NGNLLSCGTIGGNILHYDVRTH---------------SDYPTAITREGDVVCGLKWSPNG-RYLASGS-NNTVKIWDFRQ 322 (507)
Q Consensus 260 ~~~~l~~~~~dg~i~i~d~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~ 322 (507)
+..+.++-+..|.|.||++... ..+...+.+|+..=+.++|||-. ..|++|. -+.|++|...+
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~ 243 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST 243 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence 4556777788899999998632 13556777888888999999932 2366666 39999999988
Q ss_pred CCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC---CeeeeeecCCCeEEEEECCCCCeEEEEe
Q psy8285 323 LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG---KEKCHVKTDSQVTSILWSEQYRELVTSH 399 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 399 (507)
+.-..-...+.+|...|..+.|||....++++++- |++|+|||++.+ .++..-.+.+.|+-+.|+....+|++
T Consensus 244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~--DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLas-- 319 (440)
T KOG0302|consen 244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC--DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLAS-- 319 (440)
T ss_pred CceeecCccccccccchhhhccCCccCceEEeeec--CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeee--
Confidence 75444555667799999999999999999999986 999999999998 34444444588999999999998888
Q ss_pred ccCCCeEEEEeCCC---ccEEEEeeccccceeEEEECCC-CCEEEEEeCCCcEEEEecCCCCc
Q psy8285 400 GKQDCSLKMWEYPR---LHLIEELKIHQERILSAVLSPD-QTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 400 g~~d~~i~v~d~~~---~~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
|++||.++|||++. ++++..++-|..+|+++.|+|. ...|++++.|.+|.|||+.-..-
T Consensus 320 G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 320 GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCC
Confidence 99999999999975 5788999999999999999995 56788899999999999985544
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=178.72 Aligned_cols=290 Identities=12% Similarity=0.151 Sum_probs=217.5
Q ss_pred CEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc--ee--EEEEeecCc
Q psy8285 177 DTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE--RL--IQKLRTHMH 252 (507)
Q Consensus 177 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~--~~--~~~~~~~~~ 252 (507)
++.+++....+++||....+....+.... ....+.++.|+......+...+.|..+++|.-... +. +....+.
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t-~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd-- 80 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQT-AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD-- 80 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCC-CCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--
Confidence 36677788899999998755433222211 33459999998776533333366778899964322 11 1222222
Q ss_pred cEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCe
Q psy8285 253 QVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQ 329 (507)
Q Consensus 253 ~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~ 329 (507)
.-.|++. ...++++|+..+.|+|||++. +.+.+.+.+|...|+++.++....+||++++ |.|.|..+.++ ...
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~---~~t 156 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRA-KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK---QKT 156 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHH-HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccC---ccc
Confidence 2233333 357899999999999999995 4477888999999999999999999999997 99999999887 444
Q ss_pred eeecCC-CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeee-cC-CCeEEEEECCCCCeEEEEeccCCCeE
Q psy8285 330 VNNQCH-LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TD-SQVTSILWSEQYRELVTSHGKQDCSL 406 (507)
Q Consensus 330 ~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~-~~i~~~~~s~~~~~l~~~~g~~d~~i 406 (507)
..+... ...|.-+.|+|..+.++.+++. +|.|.+||+....++..+. .| .+...++|+|....|+++ .+.|..|
T Consensus 157 t~f~~~sgqsvRll~ys~skr~lL~~asd--~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vs-VG~Dkki 233 (673)
T KOG4378|consen 157 TTFTIDSGQSVRLLRYSPSKRFLLSIASD--KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVS-VGYDKKI 233 (673)
T ss_pred cceecCCCCeEEEeecccccceeeEeecc--CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEE-ecccceE
Confidence 444433 3456789999999899988875 9999999998887776553 23 688899999998888777 5689999
Q ss_pred EEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccccee--ecCCCcceEEeecc
Q psy8285 407 KMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR--QVGSGSSLEFAILK 477 (507)
Q Consensus 407 ~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~ 477 (507)
.+||....+....+. ...+...++|+++|.+|+.|+..|.|..||++..+...... +...+.+++|.+..
T Consensus 234 ~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 234 NIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEeecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 999999777666665 46688999999999999999999999999998765544332 44567788887764
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.9e-23 Score=177.31 Aligned_cols=276 Identities=23% Similarity=0.391 Sum_probs=203.2
Q ss_pred CCEEEEE--cCC----eEEEEECCCCceeEEEecCCCCCCceEEEEEccC-------CCeEEEEeCCCCcEEEEeCCCce
Q psy8285 176 HDTLAVA--LDT----SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR-------TTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 176 ~~~~~~~--~~~----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
|+++.++ .+. .+++|+-..........+- -.....|++|... |+++|+| +.+..|.|||+.=..
T Consensus 137 DnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~i--lpafPLC~ewld~~~~~~~~gNyvAiG-tmdp~IeIWDLDI~d 213 (463)
T KOG0270|consen 137 DNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFI--LPAFPLCIEWLDHGSKSGGAGNYVAIG-TMDPEIEIWDLDIVD 213 (463)
T ss_pred CcEEEEeeccCCceEEEEEEEcCCCcceeEeccee--ccCcchhhhhhhcCCCCCCCcceEEEe-ccCceeEEecccccc
Confidence 5666555 222 5667765543332221111 1234467777532 5789998 999999999975211
Q ss_pred e---E------------------EEEeecCccEEEEEee---CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEE
Q psy8285 243 L---I------------------QKLRTHMHQVIAMCWN---GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGL 298 (507)
Q Consensus 243 ~---~------------------~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 298 (507)
. . ....+|...|.+++|+ .+.||+|+.|.+|.+||+.+++ +...+..|...|.++
T Consensus 214 ~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~-p~~s~~~~~k~Vq~l 292 (463)
T KOG0270|consen 214 AVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK-PKSSITHHGKKVQTL 292 (463)
T ss_pred ccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC-cceehhhcCCceeEE
Confidence 0 0 1123588888999994 6799999999999999999987 777888899999999
Q ss_pred EEcCC-CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC-Ceee
Q psy8285 299 KWSPN-GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG-KEKC 375 (507)
Q Consensus 299 ~~~~~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~ 375 (507)
.|+|. ..+|++|+ |++|.+.|.|......... ...+.|-.++|.|.....+.++.. ||+++-+|+|.. +++.
T Consensus 293 ~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w---k~~g~VEkv~w~~~se~~f~~~td--dG~v~~~D~R~~~~~vw 367 (463)
T KOG0270|consen 293 EWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW---KFDGEVEKVAWDPHSENSFFVSTD--DGTVYYFDIRNPGKPVW 367 (463)
T ss_pred EecCCCceEEEeccccceEEeeeccCccccCceE---EeccceEEEEecCCCceeEEEecC--CceEEeeecCCCCCcee
Confidence 99995 56788888 8999999999642222222 256789999999998888887765 999999999976 8888
Q ss_pred eeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE--EEEeeccccceeEEEECCCCC-EEEEEeCCCcEEEE
Q psy8285 376 HVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL--IEELKIHQERILSAVLSPDQT-CVAAASADETISIW 451 (507)
Q Consensus 376 ~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~-~l~s~~~dg~i~iw 451 (507)
++..| .+|.++++++.-+.++++ ++.|+.|++|++..-.+ +..-.-.-+...|.++.|+-. +|+.|+..+.++||
T Consensus 368 t~~AHd~~ISgl~~n~~~p~~l~t-~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vw 446 (463)
T KOG0270|consen 368 TLKAHDDEISGLSVNIQTPGLLST-ASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVW 446 (463)
T ss_pred EEEeccCCcceEEecCCCCcceee-ccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEe
Confidence 88877 799999999998887777 88999999999865433 222111234466777788654 56778888889999
Q ss_pred ecCCCCcccc
Q psy8285 452 NCFPRDKKRK 461 (507)
Q Consensus 452 ~~~~~~~~~~ 461 (507)
|+.+....++
T Consensus 447 d~~~~~~V~k 456 (463)
T KOG0270|consen 447 DIFTNSPVRK 456 (463)
T ss_pred ecccChhHHH
Confidence 9998776654
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-24 Score=198.81 Aligned_cols=244 Identities=23% Similarity=0.413 Sum_probs=212.9
Q ss_pred cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--e
Q psy8285 183 LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--N 260 (507)
Q Consensus 183 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~ 260 (507)
..-.+++|+.+..- . |...+.++..-..++.+++| +.|-.+-+|.+.....+..+.+|..+|.++.| +
T Consensus 12 ~~t~Lr~~~~~~~~------~---hsaav~~lk~~~s~r~~~~G-g~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~ 81 (825)
T KOG0267|consen 12 RATKLRVWDTREFV------A---HSAAVGCLKIRKSSRSLVTG-GEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTS 81 (825)
T ss_pred eeeccccccchhhh------h---hhhhhceeeeeccceeeccC-CCceeeccccccCCchhheeeccCCcceeeecCcc
Confidence 44556677754321 1 77788888886667778877 89999999999888888889999999999999 5
Q ss_pred CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCe
Q psy8285 261 GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAV 339 (507)
Q Consensus 261 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v 339 (507)
..+|++|..+|+|++||+.... ....+.+|...+.++.|+|-+.+.+.|+ |..+++||.+.. -+...+.+|...+
T Consensus 82 E~LlaagsasgtiK~wDleeAk-~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~---Gc~~~~~s~~~vv 157 (825)
T KOG0267|consen 82 ERLLAAGSASGTIKVWDLEEAK-IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK---GCSHTYKSHTRVV 157 (825)
T ss_pred hhhhcccccCCceeeeehhhhh-hhhhhhccccCcceeeeccceEEeccccccccceehhhhcc---CceeeecCCccee
Confidence 7899999999999999999875 6778999999999999999999999998 799999999976 6889999999999
Q ss_pred eEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEE
Q psy8285 340 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIE 418 (507)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~ 418 (507)
..+.|+|+| .+++.++. |.++++||+..|+.+..|..+ ..+..+.|+|..-.++. |+.|+.+++||+++.+.+.
T Consensus 158 ~~l~lsP~G-r~v~~g~e--d~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~--Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 158 DVLRLSPDG-RWVASGGE--DNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAP--GSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred EEEeecCCC-ceeeccCC--cceeeeecccccccccccccccccccccccCchhhhhcc--CCCCceeeeeccceeEEee
Confidence 999999999 56666664 899999999999999999866 78999999999888888 9999999999999999998
Q ss_pred EeeccccceeEEEECCCCCEEEEEeCC
Q psy8285 419 ELKIHQERILSAVLSPDQTCVAAASAD 445 (507)
Q Consensus 419 ~~~~~~~~i~~~~~s~~~~~l~s~~~d 445 (507)
........|.+.+|+|++..+++|...
T Consensus 233 s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 233 SGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccCCccCCceeeeecCCceeeecCchh
Confidence 888888899999999999988887655
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-21 Score=178.89 Aligned_cols=277 Identities=16% Similarity=0.253 Sum_probs=216.5
Q ss_pred eeeeeeCCC-CEEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 168 TSGLDWGYH-DTLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 168 i~~~~~s~~-~~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
|.+++++.+ +.+|++ .+|.|.+|++..+-.. ...+.++.+..|.+++|++ +.+|++. +.+|.|.-||+.+++.+.
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~-~~vi~g~~drsIE~L~W~e-~~RLFS~-g~sg~i~EwDl~~lk~~~ 104 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFL-EPVIHGPEDRSIESLAWAE-GGRLFSS-GLSGSITEWDLHTLKQKY 104 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCcee-eEEEecCCCCceeeEEEcc-CCeEEee-cCCceEEEEecccCceeE
Confidence 778999875 467766 8999999999875543 3334443788999999994 5577777 899999999999999999
Q ss_pred EEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC-ceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcC
Q psy8285 246 KLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY-PTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR 321 (507)
Q Consensus 246 ~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~ 321 (507)
.+....+.|++++. .+..++.|+.||.+..++...+... ...+...++++.+++|+|++..+++|+ ||.|++||..
T Consensus 105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~ 184 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVK 184 (691)
T ss_pred EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcC
Confidence 99999999999999 4789999999998777777765422 223444568999999999999999999 7999999999
Q ss_pred CCCCCCCe----eeecC-CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeE
Q psy8285 322 QLDAKRPQ----VNNQC-HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYREL 395 (507)
Q Consensus 322 ~~~~~~~~----~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l 395 (507)
.+...... ..+.. ...-|+++.|-.++ .+++|.. -|+|.+||...+..++.+..+ ..|.+++..+++.++
T Consensus 185 ~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS--~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~v 260 (691)
T KOG2048|consen 185 SGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDS--AGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRV 260 (691)
T ss_pred CCceEEEeeecccccccCCceEEEEEEEeecC--cEEEecC--CceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeE
Confidence 87322200 01111 22347788887665 4555543 899999999999999888776 789999999999999
Q ss_pred EEEeccCCCeEEEEeCCCccE----EEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 396 VTSHGKQDCSLKMWEYPRLHL----IEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
++ ++.|+.|..|...+.+. ......|...|.+++..++ .+++|+.|..+.+-....
T Consensus 261 fs--aGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 261 FS--AGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EE--ccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 99 77899988888766533 2233568888999998877 899999999988876654
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-24 Score=196.87 Aligned_cols=241 Identities=20% Similarity=0.347 Sum_probs=200.8
Q ss_pred EEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEE
Q psy8285 223 LAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKW 300 (507)
Q Consensus 223 l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 300 (507)
++.. ..+-.+++||.+. +..|...+.++.. .++.+++|+.|-.+-+|.+.... ....+.+|..+|.++.|
T Consensus 7 ~m~~-~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~-~i~S~~~hespIeSl~f 78 (825)
T KOG0267|consen 7 LMKT-KRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN-AITSLTGHESPIESLTF 78 (825)
T ss_pred ccee-eeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-hhheeeccCCcceeeec
Confidence 3344 4556677887654 3346777777665 67899999999999999998765 45568999999999999
Q ss_pred cCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec
Q psy8285 301 SPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT 379 (507)
Q Consensus 301 ~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 379 (507)
+++..+|++|+ +|+|++||++.. +.+.++.+|...+..+.|+|.+. +.+.++ .|..+.+||.+..-+.+.+..
T Consensus 79 ~~~E~LlaagsasgtiK~wDleeA---k~vrtLtgh~~~~~sv~f~P~~~-~~a~gS--tdtd~~iwD~Rk~Gc~~~~~s 152 (825)
T KOG0267|consen 79 DTSERLLAAGSASGTIKVWDLEEA---KIVRTLTGHLLNITSVDFHPYGE-FFASGS--TDTDLKIWDIRKKGCSHTYKS 152 (825)
T ss_pred CcchhhhcccccCCceeeeehhhh---hhhhhhhccccCcceeeeccceE-Eecccc--ccccceehhhhccCceeeecC
Confidence 99999999999 599999999988 88889999999999999999984 445554 599999999998888998887
Q ss_pred C-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 380 D-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 380 ~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
+ ..+..+.|+|+|++++. |++|..++|||+..|+.+.+|..|.+.+..+.|+|..-++++|+.|+++++||+++-+.
T Consensus 153 ~~~vv~~l~lsP~Gr~v~~--g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 153 HTRVVDVLRLSPDGRWVAS--GGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred CcceeEEEeecCCCceeec--cCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEE
Confidence 7 56788999999999999 88999999999999999999999999999999999999999999999999999997766
Q ss_pred ccceee-cCCCcceEEeeccCc
Q psy8285 459 KRKARQ-VGSGSSLEFAILKQP 479 (507)
Q Consensus 459 ~~~~~~-~~~~~~~~~~~~~~~ 479 (507)
+...+. ...+.+..|.++...
T Consensus 231 I~s~~~~~~~v~~~~fn~~~~~ 252 (825)
T KOG0267|consen 231 ISSGKPETDGVRSLAFNPDGKI 252 (825)
T ss_pred eeccCCccCCceeeeecCCcee
Confidence 654432 234455555555443
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-21 Score=162.92 Aligned_cols=244 Identities=17% Similarity=0.343 Sum_probs=185.6
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce------------eEEEEe-ecCccEEEEEe---------eCCEEEE
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER------------LIQKLR-THMHQVIAMCW---------NGNLLSC 266 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~------------~~~~~~-~~~~~v~~~~~---------~~~~l~~ 266 (507)
.....+.|+|||..|++- +.|..+.+|++...- ....+. .....|...+| +..++++
T Consensus 50 nf~kgckWSPDGSciL~~-sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSL-SEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hhhccceeCCCCceEEee-cccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeee
Confidence 345678999999999999 999999999985321 111111 23455777777 3678999
Q ss_pred EecCCeEEEEECCCCCcCceeee--cCCC---ceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeee-----cCCC
Q psy8285 267 GTIGGNILHYDVRTHSDYPTAIT--REGD---VVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNN-----QCHL 336 (507)
Q Consensus 267 ~~~dg~i~i~d~~~~~~~~~~~~--~~~~---~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~ 336 (507)
.+++.-|.+||.-+++ ....+. .|.. ...+++|+|||..|++|....|+++|+......-+.... .+..
T Consensus 129 ssr~~PIh~wdaftG~-lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 129 SSRDQPIHLWDAFTGK-LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred ccccCceeeeeccccc-cccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccccccc
Confidence 9999999999999886 333222 2332 346899999999999999999999999433222222222 2236
Q ss_pred CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC-c
Q psy8285 337 SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR-L 414 (507)
Q Consensus 337 ~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~-~ 414 (507)
+-+.+++|+|....+++.++ +..++-||.-..+.++..+.++ +.|+.++|.++|+.|+++ +-.+-.|..||++. .
T Consensus 208 giisc~a~sP~~~~~~a~gs--Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsG-aRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGS--YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSG-ARKDDKILCWDIRYSR 284 (406)
T ss_pred ceeeeeeccCCCCcceeeec--ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccc-ccCCCeEEEEeehhcc
Confidence 67899999999988888876 4788888888888888888776 789999999999999995 45577999999985 5
Q ss_pred cEEEEeecccc-ceeEEEE--CCCCCEEEEEeCCCcEEEEecCC-CC
Q psy8285 415 HLIEELKIHQE-RILSAVL--SPDQTCVAAASADETISIWNCFP-RD 457 (507)
Q Consensus 415 ~~~~~~~~~~~-~i~~~~~--s~~~~~l~s~~~dg~i~iw~~~~-~~ 457 (507)
.++..+..|.. .-..|.| .|++++|++|+.||.|++||+.. ++
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 67778877765 3344444 57899999999999999999987 44
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-21 Score=162.50 Aligned_cols=275 Identities=20% Similarity=0.323 Sum_probs=207.6
Q ss_pred ceeeeeeCCCC--EEEEEcCCeEEEEECCCCc------------eeEEEecCCCCCCceEEEEEc-------cCCCeEEE
Q psy8285 167 YTSGLDWGYHD--TLAVALDTSVYTWNTKTNK------------TQLLVEYPTYDNAYISCVAWK-------PRTTDLAV 225 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~------------~~~~~~~~~~~~~~v~~~~~~-------~~~~~l~~ 225 (507)
+.....||||| +++-+.|..+.+|++...- ........ ....|...+|- |+..++++
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~--eg~tvydy~wYs~M~s~qP~t~l~a~ 128 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ--EGETVYDYCWYSRMKSDQPSTNLFAV 128 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec--cCCEEEEEEeeeccccCCCccceeee
Confidence 34468899999 8888999999999975310 11122222 35678888885 66777888
Q ss_pred EeCCCCcEEEEeCCCceeEEEEee--cCcc---EEEEEe--eCCEEEEEecCCeEEEEECC-CCCcCc-ee-----eecC
Q psy8285 226 TNTCTEYIDLWHEQEERLIQKLRT--HMHQ---VIAMCW--NGNLLSCGTIGGNILHYDVR-THSDYP-TA-----ITRE 291 (507)
Q Consensus 226 ~~~~dg~i~iwd~~~~~~~~~~~~--~~~~---v~~~~~--~~~~l~~~~~dg~i~i~d~~-~~~~~~-~~-----~~~~ 291 (507)
+ +.+.-|++||.-+|+....+.. |... ..+++| ||..|++|. ...|+++|+. .+.... .. ..+.
T Consensus 129 s-sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 129 S-SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred c-cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccc
Confidence 7 9999999999999998877764 4443 457788 788987776 6799999994 333211 11 2234
Q ss_pred CCceEEEEEcCCC-CEEEEEeC-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC
Q psy8285 292 GDVVCGLKWSPNG-RYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM 369 (507)
Q Consensus 292 ~~~v~~~~~~~~~-~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~ 369 (507)
.+.+.+++|+|.. +.++.++- ..+-||.-..+ .++..+.+|.+.|+.+.|.++|+++++-+. .|..|..||++
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~---~pl~llggh~gGvThL~~~edGn~lfsGaR--k~dkIl~WDiR 281 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR---RPLQLLGGHGGGVTHLQWCEDGNKLFSGAR--KDDKILCWDIR 281 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCC---CceeeecccCCCeeeEEeccCcCeeccccc--CCCeEEEEeeh
Confidence 6778999999955 58888884 78888877776 888888999999999999999987776554 48899999998
Q ss_pred CC-CeeeeeecC----CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC-ccEEEEeeccccceeEEEECCCCCEEEEEe
Q psy8285 370 NG-KEKCHVKTD----SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR-LHLIEELKIHQERILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 370 ~~-~~~~~~~~~----~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 443 (507)
.- .++..+..+ ..-.-....|++++|++ |+.||.|++||++. +..+..+..|...++.++++|-=..+++++
T Consensus 282 ~~~~pv~~L~rhv~~TNQRI~FDld~~~~~Las--G~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 282 YSRDPVYALERHVGDTNQRILFDLDPKGEILAS--GDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred hccchhhhhhhhccCccceEEEecCCCCceeec--cCCCccEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 64 455555544 22334566799999999 99999999999998 677888888999999999999988888877
Q ss_pred CCCcEEEEecCC
Q psy8285 444 ADETISIWNCFP 455 (507)
Q Consensus 444 ~dg~i~iw~~~~ 455 (507)
.. ++|...+
T Consensus 360 Gq---r~f~~~~ 368 (406)
T KOG2919|consen 360 GQ---RIFKYPK 368 (406)
T ss_pred Cc---eeecCCC
Confidence 54 4454443
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-20 Score=174.40 Aligned_cols=436 Identities=15% Similarity=0.185 Sum_probs=277.0
Q ss_pred CcccccceeeeeeccCcc--eeeeccccccccceeeecccCCcceeeeecCcccceeeccccccccccCC-ccCCceeEe
Q psy8285 2 NQCHLSAVKAIAWCPWEP--TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRESSRSK-MVNTDRYVV 78 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~--~llasg~~~~d~~i~iWd~~~g~~~~~~~~~~~v~~~~~s~~~~~~~~~~-~~~~~~~~~ 78 (507)
|.+|+.+++.+.+-|... ..+.+++ .||.|++||+..+++++++.....+..+.+.+......... ....+..+.
T Consensus 53 l~~~~a~l~s~~~~~~~~~~~~~~~~s--l~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~ 130 (792)
T KOG1963|consen 53 LEDHTAPLTSVIVLPSSENANYLIVCS--LDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSIL 130 (792)
T ss_pred cccccCccceeeecCCCccceEEEEEe--cCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceee
Confidence 789999999999988665 3355777 89999999999999999999777777776653332211000 000111110
Q ss_pred ecCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhc
Q psy8285 79 DRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILE 158 (507)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (507)
.... ..+.. .+.. ..+..+. ..+..+..
T Consensus 131 ~~~s-------~~~~~---------------------q~~~---~~~~t~~---------------------~~~~d~~~ 158 (792)
T KOG1963|consen 131 TTFS-------KKLSK---------------------QSSR---FVLATFD---------------------SAKGDFLK 158 (792)
T ss_pred eecc-------ccccc---------------------ceee---eEeeecc---------------------ccchhhhh
Confidence 0000 00000 0000 0000000 00000110
Q ss_pred CCCcccccceeeeeeCCCC-EEEEEcCCeEEEEECCCCcee-EEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEE
Q psy8285 159 APSIINDFYTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQ-LLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLW 236 (507)
Q Consensus 159 ~~~~~~~~~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iw 236 (507)
.... -.++..++.+ +.....+..+.+|........ ......-.|...+++.+++|++++++++ ..||.|.+|
T Consensus 159 ~~~~-----~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~-d~dGrI~vw 232 (792)
T KOG1963|consen 159 EHQE-----PKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAG-DSDGRILVW 232 (792)
T ss_pred hhcC-----CccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEe-ccCCcEEEE
Confidence 0000 1246666766 555567778999988764411 1111111167779999999999999999 999999999
Q ss_pred eCCC--c--eeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEE
Q psy8285 237 HEQE--E--RLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASG 310 (507)
Q Consensus 237 d~~~--~--~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 310 (507)
.--. . .....+.-|..+|.+++| +|.+|++|+..+.+.+|.+.+++ .+.+..-.++|..+.++||+.+.+..
T Consensus 233 ~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 233 RDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLV 310 (792)
T ss_pred eccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEE
Confidence 6432 1 234456668899999999 89999999999999999999976 66777888999999999999987777
Q ss_pred e-CCcEEEEEcCCCCCCCCeeeecC--------CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec--
Q psy8285 311 S-NNTVKIWDFRQLDAKRPQVNNQC--------HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT-- 379 (507)
Q Consensus 311 ~-d~~i~i~d~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-- 379 (507)
. |+.|.+....+......+..+.. ..+-.+.+.++|.-+.++..+. .+.|++||+-+.+.+..+..
T Consensus 311 ~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~---~g~vQ~ydl~td~~i~~~~v~~ 387 (792)
T KOG1963|consen 311 LEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH---PGHVQFYDLYTDSTIYKLQVCD 387 (792)
T ss_pred ecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC---CceEEEEeccccceeeeEEEEe
Confidence 6 89999988765522222222222 2345678889995555666554 89999999998877765531
Q ss_pred ----------CCCeEEEEECCCCCeEEEEe------ccCC--CeEEEEeCCCccEEE----Ee-eccccceeEEEEC-CC
Q psy8285 380 ----------DSQVTSILWSEQYRELVTSH------GKQD--CSLKMWEYPRLHLIE----EL-KIHQERILSAVLS-PD 435 (507)
Q Consensus 380 ----------~~~i~~~~~s~~~~~l~~~~------g~~d--~~i~v~d~~~~~~~~----~~-~~~~~~i~~~~~s-~~ 435 (507)
.-.+++++.+..|.++++.- ...| -.+++|-......-. .+ ..|...+....+. +.
T Consensus 388 ~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~ 467 (792)
T KOG1963|consen 388 ENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPT 467 (792)
T ss_pred ecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCc
Confidence 12477888888899998842 1122 357888765433322 22 3466655555544 33
Q ss_pred CC-EEEEEeCCCcEEEEecCCCCcccceeec---CCCcce-EEeeccCccccceeeeecccccccceeEEee
Q psy8285 436 QT-CVAAASADETISIWNCFPRDKKRKARQV---GSGSSL-EFAILKQPVSLTALLRSRAVEKQQHAIAYTV 502 (507)
Q Consensus 436 ~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 502 (507)
.. .+++++.||.++||-+...+...+.... ..+.+. ........|+.+|.+.+.+.++...+.-|.+
T Consensus 468 rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 468 RSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred ccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 33 7899999999999999766555443211 111222 2334455677888888877777666555544
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-21 Score=167.88 Aligned_cols=248 Identities=17% Similarity=0.245 Sum_probs=195.4
Q ss_pred CCCceEEEEEccCCC-eEEEEeCCCCcEEEEeCCCc----eeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEEC
Q psy8285 207 DNAYISCVAWKPRTT-DLAVTNTCTEYIDLWHEQEE----RLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDV 278 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~-~l~~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~ 278 (507)
+.+.|++++|+|..+ .++++|...|.|-+||+.+. .-+..+..|..+|.++.| +...+++.+.||+|++-|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 788999999999875 55555599999999999532 234556679999999999 6788999999999999999
Q ss_pred CCCCc-CceeeecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEc
Q psy8285 279 RTHSD-YPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 279 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
+.... ...........+.++.|+.+...++.+.+ |...+||++... .....+.-|...|..++++|..++++++++
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~--s~~~~~~lh~kKI~sv~~NP~~p~~laT~s 342 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG--SEYENLRLHKKKITSVALNPVCPWFLATAS 342 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCC--ccchhhhhhhcccceeecCCCCchheeecc
Confidence 87541 11222234556788899999999999987 999999999872 335556668889999999999999999988
Q ss_pred cCCCCeEEEEeCCCCC-----eeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCC----CccEEEEeecccc--
Q psy8285 357 GICDQTVRLWNSMNGK-----EKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP----RLHLIEELKIHQE-- 425 (507)
Q Consensus 357 ~~~d~~i~i~d~~~~~-----~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~----~~~~~~~~~~~~~-- 425 (507)
- |++.+|||++.-. .+..+.+...|.++.|||.+..|++ .+.|+.|+|||.. ...++.++. |..
T Consensus 343 ~--D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~T--T~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t 417 (498)
T KOG4328|consen 343 L--DQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLT--TCQDNEIRVFDSSCISAKDEPLGTIP-HNNRT 417 (498)
T ss_pred c--CcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEe--eccCCceEEeecccccccCCccceee-ccCcc
Confidence 5 9999999998643 2455566678999999999988888 5689999999983 445555554 322
Q ss_pred ----ceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccc
Q psy8285 426 ----RILSAVLSPDQTCVAAASADETISIWNCFPRDKKRK 461 (507)
Q Consensus 426 ----~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 461 (507)
.....+|.|+..++++|-.-..|-|+|-..++.+..
T Consensus 418 ~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 418 GRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE 457 (498)
T ss_pred cccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence 234578999999999999988999999887764443
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=196.07 Aligned_cols=281 Identities=21% Similarity=0.327 Sum_probs=212.4
Q ss_pred eeeeCCCC--EEEE-----------EcCCeEEEEECC--CCc--eeEEEecCCCCCCceEEEEEccCCCe---EEEEeCC
Q psy8285 170 GLDWGYHD--TLAV-----------ALDTSVYTWNTK--TNK--TQLLVEYPTYDNAYISCVAWKPRTTD---LAVTNTC 229 (507)
Q Consensus 170 ~~~~s~~~--~~~~-----------~~~~~i~iw~~~--~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~---l~~~~~~ 229 (507)
.++|+|.+ +++. +.+..+.||.+. +.+ ....-.+. .......++|.+.+.. |++||..
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCCCccceeecccc
Confidence 47888875 2222 224455666543 322 12222222 4567899999998877 4555599
Q ss_pred CCcEEEEeCCCc------eeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCcee-eecCCCceEEEE
Q psy8285 230 TEYIDLWHEQEE------RLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTA-ITREGDVVCGLK 299 (507)
Q Consensus 230 dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~ 299 (507)
||.|.+||...- ..+.+...|.+.|..+.| .+++||+|+.||.|.|||++..+.+... -....+.|.+++
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 999999998652 235566789999999999 4779999999999999999986543332 223567899999
Q ss_pred EcCCC-CEEEEEeC-CcEEEEEcCCCCCCCCeeeecCCCC--CeeEEEEccCCCcEEEEEcc-CCCCeEEEEeCCCC-Ce
Q psy8285 300 WSPNG-RYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLS--AVKAIAWCPWEPTLLATGGG-ICDQTVRLWNSMNG-KE 373 (507)
Q Consensus 300 ~~~~~-~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~~-~~ 373 (507)
|+..- ..|++++. |.+.|||++.. +++..+..+.+ .+..+.|+|++..-++++++ ...-.|.+||+|.- .+
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~---~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP 245 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKK---KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP 245 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCC---CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc
Confidence 99755 45677774 99999999987 66666665554 47799999998766666653 12247999999864 46
Q ss_pred eeeeecC-CCeEEEEECCCC-CeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCC-EEEEEeCCCcEEE
Q psy8285 374 KCHVKTD-SQVTSILWSEQY-RELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT-CVAAASADETISI 450 (507)
Q Consensus 374 ~~~~~~~-~~i~~~~~s~~~-~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~dg~i~i 450 (507)
++.+.+| ..|.++.|++.+ .+|++ .+.|+.|.+|+..+++.+.++......+..+.|.|... .++.++-||.|.|
T Consensus 246 ~k~~~~H~~GilslsWc~~D~~lllS--sgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I 323 (1049)
T KOG0307|consen 246 LKILEGHQRGILSLSWCPQDPRLLLS--SGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISI 323 (1049)
T ss_pred hhhhcccccceeeeccCCCCchhhhc--ccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceee
Confidence 6777666 689999999988 55555 67899999999999999999998888999999999655 8888999999999
Q ss_pred EecCCCC
Q psy8285 451 WNCFPRD 457 (507)
Q Consensus 451 w~~~~~~ 457 (507)
+.+....
T Consensus 324 ~sl~~~~ 330 (1049)
T KOG0307|consen 324 YSLQGTD 330 (1049)
T ss_pred eeeecCC
Confidence 9998665
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=169.56 Aligned_cols=233 Identities=15% Similarity=0.297 Sum_probs=184.1
Q ss_pred EEEEE-cCCeEEEEECCCCc-eeEE------------------EecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEe
Q psy8285 178 TLAVA-LDTSVYTWNTKTNK-TQLL------------------VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWH 237 (507)
Q Consensus 178 ~~~~~-~~~~i~iw~~~~~~-~~~~------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd 237 (507)
++|+| .+..|.|||+.=.. ..+. ....+ |...|.+++|+..-+.++++|+.|.+|++||
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~g-HTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD 272 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASG-HTDAVLALSWNRNFRNVLASGSADKTVKLWD 272 (463)
T ss_pred eEEEeccCceeEEeccccccccccceeechhhhhhhhhhccccccccc-chHHHHHHHhccccceeEEecCCCceEEEEE
Confidence 66654 89999999985311 1111 11234 8888999999988777666669999999999
Q ss_pred CCCceeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEE-EEe-C
Q psy8285 238 EQEERLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLA-SGS-N 312 (507)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d 312 (507)
+.++++...+..|...|.++.| .+..|++|+.|++|.+.|.+........ -...+.|..++|.|.....+ ++. |
T Consensus 273 ~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~-wk~~g~VEkv~w~~~se~~f~~~tdd 351 (463)
T KOG0270|consen 273 VDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE-WKFDGEVEKVAWDPHSENSFFVSTDD 351 (463)
T ss_pred cCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce-EEeccceEEEEecCCCceeEEEecCC
Confidence 9999999999999999999999 4889999999999999999964422222 23456789999999776544 444 4
Q ss_pred CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEEC
Q psy8285 313 NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWS 389 (507)
Q Consensus 313 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s 389 (507)
|+|+-+|+|+.. +++.++..|.++|.++++++..+.++++++. |+.+++|++....+.....+. +...|.++.
T Consensus 352 G~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~--d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~ 427 (463)
T KOG0270|consen 352 GTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTAST--DKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALD 427 (463)
T ss_pred ceEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeeccc--cceEEEEeecCCCCcccccccccccceeecccC
Confidence 999999999863 8899999999999999999999999999886 999999998765543322221 457888899
Q ss_pred CCCCeEEEEeccCCCeEEEEeCCCccEE
Q psy8285 390 EQYRELVTSHGKQDCSLKMWEYPRLHLI 417 (507)
Q Consensus 390 ~~~~~l~~~~g~~d~~i~v~d~~~~~~~ 417 (507)
|+-.++++. |+..+.++|||+.+...+
T Consensus 428 ~~~a~~la~-GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 428 PDVAFTLAF-GGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CCcceEEEe-cCccceEEEeecccChhH
Confidence 988877776 777889999999876544
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=165.09 Aligned_cols=227 Identities=20% Similarity=0.435 Sum_probs=177.4
Q ss_pred CEEEE--EcCCeEEEEECCC--------------CceeEEEecCCCCCCceEEEEEccCC-CeEEEEeCCCCcEEEEeCC
Q psy8285 177 DTLAV--ALDTSVYTWNTKT--------------NKTQLLVEYPTYDNAYISCVAWKPRT-TDLAVTNTCTEYIDLWHEQ 239 (507)
Q Consensus 177 ~~~~~--~~~~~i~iw~~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~dg~i~iwd~~ 239 (507)
..+++ +..|.|+||++.. .+...++++.+ |...=+.++|||-. ..|+++ ..-+.|++|...
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~g-hk~EGy~LdWSp~~~g~LlsG-Dc~~~I~lw~~~ 242 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNG-HKGEGYGLDWSPIKTGRLLSG-DCVKGIHLWEPS 242 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecc-cCccceeeecccccccccccC-ccccceEeeeec
Confidence 34444 4789999999853 12345677777 88888999999943 347777 788899999998
Q ss_pred CceeE---EEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCC-cCceeeecCCCceEEEEEcCCCCEEEEEeC
Q psy8285 240 EERLI---QKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHS-DYPTAITREGDVVCGLKWSPNGRYLASGSN 312 (507)
Q Consensus 240 ~~~~~---~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d 312 (507)
++.-. ..+.+|...|-.++| ....|++|+.||+|+|||++.+. ........|...|+.+.|+.+..+||+|+|
T Consensus 243 ~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~D 322 (440)
T KOG0302|consen 243 TGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGD 322 (440)
T ss_pred cCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCC
Confidence 87543 245579999999999 57899999999999999999873 334455889999999999998889999996
Q ss_pred -CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC-------------------
Q psy8285 313 -NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK------------------- 372 (507)
Q Consensus 313 -~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------------------- 372 (507)
|+++|||+++.+..+++..+..|..+|+++.|+|.....++++++ |.+|.+||+.-..
T Consensus 323 dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~--D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQ 400 (440)
T KOG0302|consen 323 DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGE--DNQITIWDLSVEADEEEIDQEAAEGLQDLPPQ 400 (440)
T ss_pred CceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccC--CCcEEEEEeeccCChhhhccccccchhcCCce
Confidence 999999999987778999999999999999999988888877776 9999999986321
Q ss_pred eeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEE
Q psy8285 373 EKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409 (507)
Q Consensus 373 ~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~ 409 (507)
++....+...+..+.|+++-.-+++++ +.|| +.||
T Consensus 401 LLFVHqGQke~KevhWH~QiPG~lvsT-a~dG-fnVf 435 (440)
T KOG0302|consen 401 LLFVHQGQKEVKEVHWHRQIPGLLVST-AIDG-FNVF 435 (440)
T ss_pred eEEEecchhHhhhheeccCCCCeEEEe-cccc-eeEE
Confidence 111122335688889998876665542 3455 4444
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-20 Score=175.89 Aligned_cols=264 Identities=18% Similarity=0.279 Sum_probs=203.0
Q ss_pred CeEEEEECCCC-ceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee--EEE----EeecCccEEEE
Q psy8285 185 TSVYTWNTKTN-KTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL--IQK----LRTHMHQVIAM 257 (507)
Q Consensus 185 ~~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~--~~~----~~~~~~~v~~~ 257 (507)
+.+.+|++.+. .+...+. ....|++++|+|....++++|..+|.|.+||++.+.. ... ...|..+++.+
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~----~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE----SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred ceEEEEecCCCCCceEEEe----cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 47999999886 3333333 5788999999999988888889999999999987755 222 23588999999
Q ss_pred Ee----eCCEEEEEecCCeEEEEECCCCCcCceee-----e------cCCCceEEEEEcCC-CCEEEEEeC-CcEEEEEc
Q psy8285 258 CW----NGNLLSCGTIGGNILHYDVRTHSDYPTAI-----T------REGDVVCGLKWSPN-GRYLASGSN-NTVKIWDF 320 (507)
Q Consensus 258 ~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~------~~~~~v~~~~~~~~-~~~l~~~~d-~~i~i~d~ 320 (507)
.| .+.-|++++.||.|..|+++....+.... . .....+++++|.+. -..+++|+| |.|.--+.
T Consensus 298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR 377 (555)
T ss_pred EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence 99 24569999999999999987644221111 1 12345788999884 456888886 98877433
Q ss_pred CCCCC-C----CCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC-CCCeeeeeecC-CCeEEEEECCCCC
Q psy8285 321 RQLDA-K----RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM-NGKEKCHVKTD-SQVTSILWSEQYR 393 (507)
Q Consensus 321 ~~~~~-~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~-~~i~~~~~s~~~~ 393 (507)
..... . +....+..|.++|+++.++|.+..++.+++ |.+++||... ...++..+..+ ..+++++|||...
T Consensus 378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g---DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp 454 (555)
T KOG1587|consen 378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG---DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP 454 (555)
T ss_pred cCCcccccccccccccccccCcceEeeecCCCccceeeeec---cceeEeccccCCCCcchhhhhccceeeeeEEcCcCc
Confidence 32211 1 224456678999999999999998998887 9999999988 66777777666 4599999999998
Q ss_pred eEEEEeccCCCeEEEEeCCC--ccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 394 ELVTSHGKQDCSLKMWEYPR--LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
-++++ +..+|.|.+||+.. ..++.+.+.+....+.+.|++.|+.|+.|...|.+++|++...
T Consensus 455 avF~~-~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 455 AVFAT-VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred eEEEE-EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 88776 78899999999964 3556666556667788899999999999999999999999643
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=156.43 Aligned_cols=245 Identities=16% Similarity=0.245 Sum_probs=183.1
Q ss_pred eEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceee
Q psy8285 211 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAI 288 (507)
Q Consensus 211 v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 288 (507)
..|+.|++.|.+||+| +.||.|.|||+.+...-+.+.+|..+|.+++| +|+.|++++.|..|.+||+..+. +...+
T Consensus 26 a~~~~Fs~~G~~lAvG-c~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVG-CANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-PLKRI 103 (405)
T ss_pred cceEEeccCcceeeee-ccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-ceeEE
Confidence 7899999999999999 99999999999999988899999999999999 89999999999999999999987 44433
Q ss_pred ecCCCceEEEEEcCCCCEEEEE--eCCcEEEEEcCCCCCCCCeeeec--C-CCCCeeEEEEccCCCcEEEEEccCCCCeE
Q psy8285 289 TREGDVVCGLKWSPNGRYLASG--SNNTVKIWDFRQLDAKRPQVNNQ--C-HLSAVKAIAWCPWEPTLLATGGGICDQTV 363 (507)
Q Consensus 289 ~~~~~~v~~~~~~~~~~~l~~~--~d~~i~i~d~~~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~~~~~~~~d~~i 363 (507)
....+|..+.|+|..+..+.+ -+..-.+-++..+. ..+.... + -.....+..|.+.|+++++ |.+ .|.+
T Consensus 104 -rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIit-Gts--KGkl 177 (405)
T KOG1273|consen 104 -RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIIT-GTS--KGKL 177 (405)
T ss_pred -EccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEE-ecC--cceE
Confidence 357899999999965443333 35444555554321 1111111 0 0111223468888865555 443 9999
Q ss_pred EEEeCCCCCeeeeeecC--CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc-------cE--EEEeec--cccceeEE
Q psy8285 364 RLWNSMNGKEKCHVKTD--SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL-------HL--IEELKI--HQERILSA 430 (507)
Q Consensus 364 ~i~d~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~-------~~--~~~~~~--~~~~i~~~ 430 (507)
.++|..+.+++..++.. ..|..+.++..|+.++. .+.|..|+.|+++.- ++ .+.++. ....=.++
T Consensus 178 lv~~a~t~e~vas~rits~~~IK~I~~s~~g~~lii--NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~c 255 (405)
T KOG1273|consen 178 LVYDAETLECVASFRITSVQAIKQIIVSRKGRFLII--NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKC 255 (405)
T ss_pred EEEecchheeeeeeeechheeeeEEEEeccCcEEEE--ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhe
Confidence 99999999999888765 57899999999999999 789999999998621 11 122211 12233568
Q ss_pred EECCCCCEEEEEeC-CCcEEEEecCCCCcccceeec
Q psy8285 431 VLSPDQTCVAAASA-DETISIWNCFPRDKKRKARQV 465 (507)
Q Consensus 431 ~~s~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~ 465 (507)
.||.+|.|++.++. ...++||.-..+..++.+...
T Consensus 256 cfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~ 291 (405)
T KOG1273|consen 256 CFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGT 291 (405)
T ss_pred eecCCccEEEeccccceeEEEEecCCcceeeeecCC
Confidence 89999999987764 467999999999888776543
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-19 Score=149.75 Aligned_cols=247 Identities=17% Similarity=0.307 Sum_probs=184.0
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCC--CceeEEEecCCCCCCceEEEEEccC--CCeEEEEeCCCCcEEEEeCCCc
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKT--NKTQLLVEYPTYDNAYISCVAWKPR--TTDLAVTNTCTEYIDLWHEQEE 241 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~dg~i~iwd~~~~ 241 (507)
|+++.|.+-| +++++.|++|+|||..+ +.....-.... |.+.|..+.|.+- |+.+|++ +.|+++.||.-...
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wra-h~~Si~rV~WAhPEfGqvvA~c-S~Drtv~iWEE~~~ 93 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRA-HDGSIWRVVWAHPEFGQVVATC-SYDRTVSIWEEQEK 93 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEe-cCCcEEEEEecCccccceEEEE-ecCCceeeeeeccc
Confidence 5666676654 88889999999999644 45555555555 9999999999653 6888888 99999999986321
Q ss_pred ---------eeEEEEeecCccEEEEEe----eCCEEEEEecCCeEEEEECCCCCcC------------ceeeecCCCceE
Q psy8285 242 ---------RLIQKLRTHMHQVIAMCW----NGNLLSCGTIGGNILHYDVRTHSDY------------PTAITREGDVVC 296 (507)
Q Consensus 242 ---------~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~------------~~~~~~~~~~v~ 296 (507)
....++......|+++.| -|-.+|+++.||.++||+....-.. ......+..+..
T Consensus 94 ~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~ 173 (361)
T KOG2445|consen 94 SEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCF 173 (361)
T ss_pred ccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcce
Confidence 234456678889999999 4789999999999999997653211 111224566788
Q ss_pred EEEEcCC---CCEEEEEeCC------cEEEEEcCCCC-CCCCeeeecCCCCCeeEEEEccCCC---cEEEEEccCCCCeE
Q psy8285 297 GLKWSPN---GRYLASGSNN------TVKIWDFRQLD-AKRPQVNNQCHLSAVKAIAWCPWEP---TLLATGGGICDQTV 363 (507)
Q Consensus 297 ~~~~~~~---~~~l~~~~d~------~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~d~~i 363 (507)
|+.|+|. ..+||+|+|. .++||...... ....+..+.+|..+|+.++|.|.-. ++++++.. || |
T Consensus 174 CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k--Dg-v 250 (361)
T KOG2445|consen 174 CVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK--DG-V 250 (361)
T ss_pred EEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec--Cc-E
Confidence 9999974 4678998854 89999887653 4456677789999999999999632 57777775 88 9
Q ss_pred EEEeCCCC--------------------CeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC---ccEEEE
Q psy8285 364 RLWNSMNG--------------------KEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR---LHLIEE 419 (507)
Q Consensus 364 ~i~d~~~~--------------------~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~---~~~~~~ 419 (507)
+||.++.. +.+..+..| +++..+.|+-.|..|++ .+.||.|++|...- .++...
T Consensus 251 ~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS--tGdDG~VRLWkany~n~~kC~sv 328 (361)
T KOG2445|consen 251 RIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS--TGDDGCVRLWKANYNNLWKCTSV 328 (361)
T ss_pred EEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee--cCCCceeeehhhhhhhhheeeeE
Confidence 99998731 122334445 68999999999999998 67899999998642 344444
Q ss_pred ee
Q psy8285 420 LK 421 (507)
Q Consensus 420 ~~ 421 (507)
+.
T Consensus 329 ~~ 330 (361)
T KOG2445|consen 329 LK 330 (361)
T ss_pred Ee
Confidence 44
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=157.45 Aligned_cols=270 Identities=15% Similarity=0.224 Sum_probs=194.0
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccC-C-CeEEEEeCCCCcEEEEeCCCceeEEEEe--ecC-c
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR-T-TDLAVTNTCTEYIDLWHEQEERLIQKLR--THM-H 252 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~-~~l~~~~~~dg~i~iwd~~~~~~~~~~~--~~~-~ 252 (507)
++++.+.|.|++||..+++....+.. +...+..+.|..+ + ..+.++ +.||+|++||++.......+. .+. .
T Consensus 43 vav~lSngsv~lyd~~tg~~l~~fk~---~~~~~N~vrf~~~ds~h~v~s~-ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLEEFKG---PPATTNGVRFISCDSPHGVISC-SSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred EEEEecCCeEEEEeccchhhhheecC---CCCcccceEEecCCCCCeeEEe-ccCCeEEEEEeecchhhhheeccCCCCC
Confidence 55556899999999999887666554 7778888898764 3 445556 999999999999876554443 344 4
Q ss_pred cEEEEEe--eCCEEEEEe----cCCeEEEEECCCCCc-CceeeecCCCceEEEEEcCC-CCEEEEEe-CCcEEEEEcCCC
Q psy8285 253 QVIAMCW--NGNLLSCGT----IGGNILHYDVRTHSD-YPTAITREGDVVCGLKWSPN-GRYLASGS-NNTVKIWDFRQL 323 (507)
Q Consensus 253 ~v~~~~~--~~~~l~~~~----~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~-d~~i~i~d~~~~ 323 (507)
+..+++- +++.+++|+ .+..|.+||++..+. .......|.+.|+++.|+|. .++|++|+ ||-|.+||++..
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 5566666 467777775 356799999998876 44556789999999999995 57899999 899999999887
Q ss_pred CCCCCeeeecCCCCCeeEEEEccCCC-cEEEEEccCCCCeEEEEeCCCCCeeeeeecC-------------CCeEEEEEC
Q psy8285 324 DAKRPQVNNQCHLSAVKAIAWCPWEP-TLLATGGGICDQTVRLWNSMNGKEKCHVKTD-------------SQVTSILWS 389 (507)
Q Consensus 324 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-------------~~i~~~~~s 389 (507)
.....+.....|...|.++.|..++- ++.+... ..+..+|++..+.+...+... ..+......
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH---~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~ 275 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH---METFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSP 275 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEEEEc---cCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccC
Confidence 55556666666888899999998773 3444443 889999999988765554432 112222222
Q ss_pred CCCCeEEEEeccCCCeEEEEeCC------CccEEEEeec-cccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 390 EQYRELVTSHGKQDCSLKMWEYP------RLHLIEELKI-HQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 390 ~~~~~l~~~~g~~d~~i~v~d~~------~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
.+....+.+ |..-|...++-+. ..+.+..+.+ |..-|+++.|...+..+.||+.||.+.+|....
T Consensus 276 ~~~~~~~l~-g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 276 GDKDTCALA-GTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred CCcceEEEe-ccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 233334442 4435555554332 2355666666 677789999998999999999999999999743
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-20 Score=154.30 Aligned_cols=267 Identities=13% Similarity=0.212 Sum_probs=198.3
Q ss_pred EEEEEcCCeEEEEECCCCce---eEEEecCCCCCCceEEEEEccC----CCeEEEEeCCCCcEEEEeCCCceeEEEEeec
Q psy8285 178 TLAVALDTSVYTWNTKTNKT---QLLVEYPTYDNAYISCVAWKPR----TTDLAVTNTCTEYIDLWHEQEERLIQKLRTH 250 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~ 250 (507)
++|....+.+.+|.....-. .+...-+. ++.....++|+-+ ..++|++ +.-|.|+|.|+.++++...+.+|
T Consensus 57 vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d-~~Esfytcsw~yd~~~~~p~la~~-G~~GvIrVid~~~~~~~~~~~gh 134 (385)
T KOG1034|consen 57 VFATVGGNRVTIYECPGDGGIRLLQSYADED-HDESFYTCSWSYDSNTGNPFLAAG-GYLGVIRVIDVVSGQCSKNYRGH 134 (385)
T ss_pred eEEEeCCcEEEEEEECCccceeeeeeccCCC-CCcceEEEEEEecCCCCCeeEEee-cceeEEEEEecchhhhccceecc
Confidence 66666778899998765332 22222233 7778889999765 3567777 79999999999999999999999
Q ss_pred CccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCcee---eecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q psy8285 251 MHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTA---ITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQL 323 (507)
Q Consensus 251 ~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~ 323 (507)
...|..+.+ +.+++++++.|..|++|++++.. +... ..+|.+.|.++.|+++|.+|++++ |..+++|++...
T Consensus 135 G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~-Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 135 GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV-CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred CccchhhhcCCCCCcEEEEecCCceEEEEeccCCe-EEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 999999999 57899999999999999999875 3333 467999999999999999999999 899999999843
Q ss_pred CCC-------------------C-----C-eeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC-CCCe----
Q psy8285 324 DAK-------------------R-----P-QVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM-NGKE---- 373 (507)
Q Consensus 324 ~~~-------------------~-----~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~---- 373 (507)
+.. . + ..+-.-|...|.|+.|-- ..++.-+. ++.|..|... -++.
T Consensus 214 ~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSksc---enaI~~w~pgkl~e~~~~v 288 (385)
T KOG1034|consen 214 EFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKSC---ENAIVCWKPGKLEESIHNV 288 (385)
T ss_pred HHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--hheeeccc---CceEEEEecchhhhhhhcc
Confidence 100 0 0 012233777788888864 34554443 8899999872 1111
Q ss_pred ---------eeeeecC-CCe--EEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEE--Eeec--cccceeEEEECCCCC
Q psy8285 374 ---------KCHVKTD-SQV--TSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIE--ELKI--HQERILSAVLSPDQT 437 (507)
Q Consensus 374 ---------~~~~~~~-~~i--~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~--~~~~--~~~~i~~~~~s~~~~ 437 (507)
+..+... ..+ ...+|.|-++.|+. |.+.|.|++||++..++.. ++.. -...|...+|+.|+.
T Consensus 289 kp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~--gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 289 KPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL--GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS 366 (385)
T ss_pred CCCccceeeeeEeccCccceEEEEEeecHHHHHHhh--ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence 1122222 233 44566778899999 8999999999998876532 2221 235699999999999
Q ss_pred EEEEEeCCCcEEEEecC
Q psy8285 438 CVAAASADETISIWNCF 454 (507)
Q Consensus 438 ~l~s~~~dg~i~iw~~~ 454 (507)
.|+...+|++|.-||..
T Consensus 367 ~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 367 ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEEeCCCcEEEEEee
Confidence 99999999999999854
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.7e-18 Score=163.33 Aligned_cols=278 Identities=27% Similarity=0.471 Sum_probs=211.2
Q ss_pred ceeeeeeCCCC-EEE-EEc-CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 167 YTSGLDWGYHD-TLA-VAL-DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~-~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
.+..++|+|++ .++ ++. ++.+++|+...+........ |...|.+++|+|++..++++++.|+.+++||...+..
T Consensus 157 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~ 233 (466)
T COG2319 157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG---HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233 (466)
T ss_pred cEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc---CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcE
Confidence 35579999988 444 443 99999999988665555443 8899999999999983443338999999999887777
Q ss_pred EE-EEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8285 244 IQ-KLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 244 ~~-~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d 319 (507)
+. .+..|.... ...| ++..+++++.|+.+++|++............|...+.++.|.|++..+++++ |+.+.+||
T Consensus 234 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~ 312 (466)
T COG2319 234 LRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWD 312 (466)
T ss_pred EeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence 77 677787774 2245 6778889999999999999976642333357789999999999888888876 67899998
Q ss_pred cCCCCCCCCeeeec--CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEE
Q psy8285 320 FRQLDAKRPQVNNQ--CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVT 397 (507)
Q Consensus 320 ~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (507)
.... ....... .|...+..+.|.+++..+...+.. |+.+.+|+...............+..+.+.+ . ....
T Consensus 313 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ 385 (466)
T COG2319 313 LETG---KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD--DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D-GRVV 385 (466)
T ss_pred cCCC---ceEEEeeecccCCceEEEEECCCCCEEEEeecC--CCcEEeeecCCCceeEEecCCceEEEEEECC-C-CCEE
Confidence 8876 3333333 677789999994332345544333 7899999998887333333333488999999 6 4444
Q ss_pred EeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 398 SHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 398 ~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
..+..++.+.+|+............+...+....+++++..+++++.++.+++|+...
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 386 SSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 2257889999999998887777765447889999999999999999999999999988
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=169.00 Aligned_cols=241 Identities=15% Similarity=0.254 Sum_probs=192.7
Q ss_pred EecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEee----CCEEEEEecCCeEEEE
Q psy8285 201 VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN----GNLLSCGTIGGNILHY 276 (507)
Q Consensus 201 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~ 276 (507)
+.+.| |.+.|.++...|.|..|++| +.||+|+||.+.++.++.++. ..+.|.+++|+ -..||++.... +.+.
T Consensus 394 lvyrG-Htg~Vr~iSvdp~G~wlasG-sdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv 469 (733)
T KOG0650|consen 394 LVYRG-HTGLVRSISVDPSGEWLASG-SDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV 469 (733)
T ss_pred eeEec-cCCeEEEEEecCCcceeeec-CCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence 34556 99999999999999999999 999999999999999999887 45589999993 33555554333 3333
Q ss_pred ECCCC---------------------------------C---cCceeeecCCCceEEEEEcCCCCEEEEEe-C---CcEE
Q psy8285 277 DVRTH---------------------------------S---DYPTAITREGDVVCGLKWSPNGRYLASGS-N---NTVK 316 (507)
Q Consensus 277 d~~~~---------------------------------~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d---~~i~ 316 (507)
+..-+ . .-......|...|..+.|+..|.+|++.. + ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32111 0 01123345778899999999999999876 2 7899
Q ss_pred EEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeE
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYREL 395 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l 395 (507)
|+++... .....+....+.|.++.|+|...+++++. ...|+|||+...+.++.+... ..|..++++|.|..|
T Consensus 550 iHQLSK~---~sQ~PF~kskG~vq~v~FHPs~p~lfVaT----q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl 622 (733)
T KOG0650|consen 550 IHQLSKR---KSQSPFRKSKGLVQRVKFHPSKPYLFVAT----QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL 622 (733)
T ss_pred EEecccc---cccCchhhcCCceeEEEecCCCceEEEEe----ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence 9999876 33344545667899999999987777654 689999999988777766655 679999999999999
Q ss_pred EEEeccCCCeEEEEeCCCc-cEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 396 VTSHGKQDCSLKMWEYPRL-HLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
++ |+.|+.+..||+.-. ++.+++..|...+++++|++.-.++++|+.||++.|+.-.
T Consensus 623 i~--gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 623 IL--GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred EE--ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeee
Confidence 99 899999999999754 6778888999999999999999999999999999998643
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-21 Score=188.41 Aligned_cols=242 Identities=17% Similarity=0.351 Sum_probs=189.0
Q ss_pred ccceeeeeeCCC-----CEEEEE-cCCeEEEEECCCC----ceeEEEecCCCCCCceEEEEEccCCC-eEEEEeCCCCcE
Q psy8285 165 DFYTSGLDWGYH-----DTLAVA-LDTSVYTWNTKTN----KTQLLVEYPTYDNAYISCVAWKPRTT-DLAVTNTCTEYI 233 (507)
Q Consensus 165 ~~~i~~~~~s~~-----~~~~~~-~~~~i~iw~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~dg~i 233 (507)
+...+.++|.+. |++++| .||.|.+||...- +...+.+... |.+.|..+.|++.+. .||+| +.||.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~-h~G~V~gLDfN~~q~nlLASG-a~~geI 141 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK-HTGPVLGLDFNPFQGNLLASG-ADDGEI 141 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc-cCCceeeeeccccCCceeecc-CCCCcE
Confidence 334567999873 467765 8999999998652 2222333444 999999999999987 55555 999999
Q ss_pred EEEeCCCceeEEEEe--ecCccEEEEEee---CCEEEEEecCCeEEEEECCCCCcCceeeecCC--CceEEEEEcCCCC-
Q psy8285 234 DLWHEQEERLIQKLR--THMHQVIAMCWN---GNLLSCGTIGGNILHYDVRTHSDYPTAITREG--DVVCGLKWSPNGR- 305 (507)
Q Consensus 234 ~iwd~~~~~~~~~~~--~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~- 305 (507)
.|||+++.+.-.... .....|.+++|| .+.|++++.+|.+.|||++..+ +...+..+. ..+..++|+|+..
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-PIIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC-cccccccCCCccceeeeeeCCCCce
Confidence 999998755443332 256789999995 6789999999999999999875 344444343 3477899999874
Q ss_pred EEEEEe--C--CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-
Q psy8285 306 YLASGS--N--NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD- 380 (507)
Q Consensus 306 ~l~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~- 380 (507)
.+++++ | -.|.+||+|.. ..+++.+++|...|.++.|++.+..++++++. |+.|.+|+..+++.+..+...
T Consensus 221 ql~~As~dd~~PviqlWDlR~a--ssP~k~~~~H~~GilslsWc~~D~~lllSsgk--D~~ii~wN~~tgEvl~~~p~~~ 296 (1049)
T KOG0307|consen 221 QLLVASGDDSAPVIQLWDLRFA--SSPLKILEGHQRGILSLSWCPQDPRLLLSSGK--DNRIICWNPNTGEVLGELPAQG 296 (1049)
T ss_pred eeeeecCCCCCceeEeeccccc--CCchhhhcccccceeeeccCCCCchhhhcccC--CCCeeEecCCCceEeeecCCCC
Confidence 355554 3 68999999975 36777788999999999999999777777775 999999999999999998876
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~ 414 (507)
..+..+.|+|...-++++ .+-||.|.||.+...
T Consensus 297 nW~fdv~w~pr~P~~~A~-asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAA-ASFDGKISIYSLQGT 329 (1049)
T ss_pred cceeeeeecCCCcchhhh-heeccceeeeeeecC
Confidence 689999999999855544 789999999998654
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-19 Score=163.50 Aligned_cols=186 Identities=22% Similarity=0.367 Sum_probs=142.9
Q ss_pred ecCCeEEEEECCCCCcCce-eee--cCCCceEEEEEcC-CCCEEEEEeC-CcEEEEEcCCCCCC----CCeeeecCCCCC
Q psy8285 268 TIGGNILHYDVRTHSDYPT-AIT--REGDVVCGLKWSP-NGRYLASGSN-NTVKIWDFRQLDAK----RPQVNNQCHLSA 338 (507)
Q Consensus 268 ~~dg~i~i~d~~~~~~~~~-~~~--~~~~~v~~~~~~~-~~~~l~~~~d-~~i~i~d~~~~~~~----~~~~~~~~~~~~ 338 (507)
+..|.|-||+++....... .+. .....|+.+.|.| |...||+++| |.|++|.+..+... .+...+..|...
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK 679 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK 679 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence 3457888888876543221 111 2456789999999 6678888885 99999999876332 445567789999
Q ss_pred eeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc-E
Q psy8285 339 VKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH-L 416 (507)
Q Consensus 339 v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~-~ 416 (507)
|+++.|+|-...++++++ +|.+|++||+++++....+.+| ..|..++|||+|+.+++ .+.||.|++|+-++++ +
T Consensus 680 I~slRfHPLAadvLa~as--yd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~At--VcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVAS--YDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIAT--VCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred EEEEEecchhhhHhhhhh--ccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceee--eecCceEEEeCCCCCCCc
Confidence 999999998878888776 4999999999999998888888 78999999999999999 6799999999988764 4
Q ss_pred EEEeeccc-cceeEEEECCCCCEEEEEeCC----CcEEEEecCCCC
Q psy8285 417 IEELKIHQ-ERILSAVLSPDQTCVAAASAD----ETISIWNCFPRD 457 (507)
Q Consensus 417 ~~~~~~~~-~~i~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~~ 457 (507)
+++-++.. .+-..+.|--||+++++.+.| ..|.+|+.++-.
T Consensus 756 v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 756 VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence 44433321 233457788899999888766 468888876543
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-18 Score=158.91 Aligned_cols=235 Identities=14% Similarity=0.250 Sum_probs=169.5
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeeecCcccceeeccccccccccCCccCCceeEeecC
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRESSRSKMVNTDRYVVDRS 81 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 81 (507)
|+||++.|.|+|||.||+. +|||+ .|+.|.||+-+-.-. ....|...|.++.|+|-...+.+....
T Consensus 49 LKgHKDtVycVAys~dGkr-FASG~--aDK~VI~W~~klEG~-LkYSH~D~IQCMsFNP~~h~LasCsLs---------- 114 (1081)
T KOG1538|consen 49 LKGHKDTVYCVAYAKDGKR-FASGS--ADKSVIIWTSKLEGI-LKYSHNDAIQCMSFNPITHQLASCSLS---------- 114 (1081)
T ss_pred cccccceEEEEEEccCCce-eccCC--CceeEEEecccccce-eeeccCCeeeEeecCchHHHhhhcchh----------
Confidence 7899999999999999997 99999 999999998753332 235688899999999877665542100
Q ss_pred CccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCCC
Q psy8285 82 SYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPS 161 (507)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (507)
+ ..+|+...+. +. .
T Consensus 115 ----d------------------------------------FglWS~~qK~------------------------V~--K 128 (1081)
T KOG1538|consen 115 ----D------------------------------------FGLWSPEQKS------------------------VS--K 128 (1081)
T ss_pred ----h------------------------------------ccccChhhhh------------------------HH--h
Confidence 0 0111111000 00 0
Q ss_pred cccccceeeeeeCCCC-EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCC-----CeEEEEeCCCCcEE
Q psy8285 162 IINDFYTSGLDWGYHD-TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRT-----TDLAVTNTCTEYID 234 (507)
Q Consensus 162 ~~~~~~i~~~~~s~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~~dg~i~ 234 (507)
......+++.+|..|| +++.| .+|+|.+-+. +++..-.++-+|+.+.+|.+++|+|.. ..+++. ....++.
T Consensus 129 ~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~-DW~qTLS 206 (1081)
T KOG1538|consen 129 HKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVA-DWGQTLS 206 (1081)
T ss_pred hhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEE-eccceeE
Confidence 0112236789999999 55555 8999999865 455555555566589999999999974 456666 7788888
Q ss_pred EEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-
Q psy8285 235 LWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS- 311 (507)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 311 (507)
+|.+. |+.+..-+.-.-...|+++ +|.++..|+.|+.+.+|.-+.- ...+.......|..++..|+++.++.|.
T Consensus 207 Fy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gv--rLGTvg~~D~WIWtV~~~PNsQ~v~~GCq 283 (1081)
T KOG1538|consen 207 FYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGV--RLGTVGEQDSWIWTVQAKPNSQYVVVGCQ 283 (1081)
T ss_pred EEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCe--EEeeccccceeEEEEEEccCCceEEEEEc
Confidence 88765 4555544444445567777 9999999999999999976542 2445555678999999999999999999
Q ss_pred CCcEEEEEcC
Q psy8285 312 NNTVKIWDFR 321 (507)
Q Consensus 312 d~~i~i~d~~ 321 (507)
||+|-.|++-
T Consensus 284 DGTiACyNl~ 293 (1081)
T KOG1538|consen 284 DGTIACYNLI 293 (1081)
T ss_pred cCeeehhhhH
Confidence 8999999864
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-18 Score=159.13 Aligned_cols=270 Identities=10% Similarity=0.098 Sum_probs=180.2
Q ss_pred EEEEcCCeEEEEECCC-CceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC-cee--EEEEeecCccE
Q psy8285 179 LAVALDTSVYTWNTKT-NKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE-ERL--IQKLRTHMHQV 254 (507)
Q Consensus 179 ~~~~~~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~-~~~--~~~~~~~~~~v 254 (507)
++...++.|++|++.+ ++...+..++ ..+....++++|++++|++++..++.|.+|++.. ++. +.... .....
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~--~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p 82 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD--VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSP 82 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe--cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCc
Confidence 4446789999999964 4443333333 3456778999999999988756789999999873 332 22222 22345
Q ss_pred EEEEe--eCCEEEEEec-CCeEEEEECCCCCcCceee--ecCCCceEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCC
Q psy8285 255 IAMCW--NGNLLSCGTI-GGNILHYDVRTHSDYPTAI--TREGDVVCGLKWSPNGRYLASGS-N-NTVKIWDFRQLDAKR 327 (507)
Q Consensus 255 ~~~~~--~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~ 327 (507)
..+.+ ++++|++++. ++.|.+|++++........ ..+.....+++++|+++++++++ . +.|.+||+++.....
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 56777 5777777664 7899999997532121111 12334567789999999988777 4 999999997632111
Q ss_pred C----eeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC--CC--eeeeeec-------CCCeEEEEECCCC
Q psy8285 328 P----QVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN--GK--EKCHVKT-------DSQVTSILWSEQY 392 (507)
Q Consensus 328 ~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~--~~~~~~~-------~~~i~~~~~s~~~ 392 (507)
. ..... .......+.|+|++++++++... +++|.+|++.. ++ .+..+.. ......+.++|++
T Consensus 163 ~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~--~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 163 AQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNEL--NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccCCCceecC-CCCCCceEEECCCCCEEEEEecC--CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 1 01111 23456789999999888777654 89999999973 32 2333221 1123468899999
Q ss_pred CeEEEEeccCCCeEEEEeCCCccEEEEeecc---ccceeEEEECCCCCEEEEEeC-CCcEEEEecCC
Q psy8285 393 RELVTSHGKQDCSLKMWEYPRLHLIEELKIH---QERILSAVLSPDQTCVAAASA-DETISIWNCFP 455 (507)
Q Consensus 393 ~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~s~~~-dg~i~iw~~~~ 455 (507)
++++++ ...++.|.+|++........+.++ ......+.++|||++|+++.. +++|.+|++..
T Consensus 240 ~~lyv~-~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 240 RHLYAC-DRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CEEEEe-cCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 999995 345789999998654322222222 124567899999999988775 89999999864
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=166.39 Aligned_cols=271 Identities=17% Similarity=0.251 Sum_probs=208.0
Q ss_pred ceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 167 YTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
+|+.++|.||| .+..+.+..+.+||..+|...+.. .+ |.+.|.|++|+.+|++++++ +.|..|.+|+..-. .
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtL--Kg-HKDtVycVAys~dGkrFASG-~aDK~VI~W~~klE---G 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPL--KG-HKDTVYCVAYAKDGKRFASG-SADKSVIIWTSKLE---G 86 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCccccccc--cc-ccceEEEEEEccCCceeccC-CCceeEEEeccccc---c
Confidence 67789999999 666667889999999999876554 45 99999999999999999999 99999999985432 2
Q ss_pred EE-eecCccEEEEEee--CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcC
Q psy8285 246 KL-RTHMHQVIAMCWN--GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR 321 (507)
Q Consensus 246 ~~-~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~ 321 (507)
.+ ..|...|.|++|+ ...|++++- ...-+|....... ........+.+++|..||++++.|- +|+|.+-+-.
T Consensus 87 ~LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V---~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~ 162 (1081)
T KOG1538|consen 87 ILKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV---SKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN 162 (1081)
T ss_pred eeeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH---HhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC
Confidence 22 2599999999996 567777764 3566787665331 1122345788999999999999998 7999987543
Q ss_pred CCCCCCCeeeecCCCCCeeEEEEccCCC----cEEEEEccCCCCeEEEEeCCCCCeee-eeecCCCeEEEEECCCCCeEE
Q psy8285 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEP----TLLATGGGICDQTVRLWNSMNGKEKC-HVKTDSQVTSILWSEQYRELV 396 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~ 396 (507)
.. ..-.+...-+...+|.+++|+|... .++++.. ...++.+|.+. |+.+. .-..+-...|+++.++|.+++
T Consensus 163 gE-ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D--W~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~L 238 (1081)
T KOG1538|consen 163 GE-EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD--WGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYIL 238 (1081)
T ss_pred CC-cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe--ccceeEEEEec-ceeecccccCCCCchhheeccCCcEEE
Confidence 32 2223334445678999999999642 3444443 36788888774 33333 223334678999999999999
Q ss_pred EEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 397 TSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 397 ~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
. |+.|+.+++|. +.|-.+.++......|+.++..|++++++.|+.||+|..|++..
T Consensus 239 i--GGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 239 L--GGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred E--ccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 9 88899999997 66777788777788999999999999999999999999999863
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=148.33 Aligned_cols=266 Identities=18% Similarity=0.281 Sum_probs=196.0
Q ss_pred cCCeEEEEECCCCceeE-EEecCCCCCCceEEEEEccCCCeEEEEeCCC-------CcEEEEeCCCc---------eeEE
Q psy8285 183 LDTSVYTWNTKTNKTQL-LVEYPTYDNAYISCVAWKPRTTDLAVTNTCT-------EYIDLWHEQEE---------RLIQ 245 (507)
Q Consensus 183 ~~~~i~iw~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-------g~i~iwd~~~~---------~~~~ 245 (507)
.+++|.+.++..+.-.. ...+.. +.+.|..++-+|-.+.++++...+ -...||.+... +++.
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h-~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~ 116 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFH-HAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA 116 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhc-CCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh
Confidence 57888888877644322 122233 788999999999887766652221 24779988643 2233
Q ss_pred EEe-ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceee-----ecCCCceEEEEEcC--CCCEEEEEeCCcE
Q psy8285 246 KLR-THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAI-----TREGDVVCGLKWSP--NGRYLASGSNNTV 315 (507)
Q Consensus 246 ~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~~~~--~~~~l~~~~d~~i 315 (507)
.+. .+-+.|.|+.| ++..+++-. |..|.+|++.........+ ..+....++-+|+| |++.+++.+|+++
T Consensus 117 ~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl 195 (370)
T KOG1007|consen 117 SLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTL 195 (370)
T ss_pred cCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcE
Confidence 333 35568999999 788887776 8899999998876422222 23455678889998 8899999999999
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC-CeeeeeecC-CCeEEEEECCCCC
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG-KEKCHVKTD-SQVTSILWSEQYR 393 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~-~~i~~~~~s~~~~ 393 (507)
..||+++..... ..-..|...|..+.|+|+-.+++++++. |+.|+|||.+.- .++..+..| ..+.++.|+|.-.
T Consensus 196 ~~~D~RT~~~~~--sI~dAHgq~vrdlDfNpnkq~~lvt~gD--dgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd 271 (370)
T KOG1007|consen 196 QFWDLRTMKKNN--SIEDAHGQRVRDLDFNPNKQHILVTCGD--DGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD 271 (370)
T ss_pred EEEEccchhhhc--chhhhhcceeeeccCCCCceEEEEEcCC--CccEEEEeccCCCccccccCCCceEEEEEEecCccc
Confidence 999999873222 2234588899999999999999999986 999999999865 467777777 6899999999876
Q ss_pred eEEEEeccCCCeEEEEeCCCc-----------------------------cEEEEeeccccceeEEEECCCCC-EEEEEe
Q psy8285 394 ELVTSHGKQDCSLKMWEYPRL-----------------------------HLIEELKIHQERILSAVLSPDQT-CVAAAS 443 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~~-----------------------------~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~ 443 (507)
.|+.+ |+.|..|.+|...+- ..+.++..|...|++++||.-.. .+|+-+
T Consensus 272 qLiLs-~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS 350 (370)
T KOG1007|consen 272 QLILS-GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS 350 (370)
T ss_pred eEEEe-cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence 66555 788999999965221 12345677999999999998555 567889
Q ss_pred CCCcEEEEecCC
Q psy8285 444 ADETISIWNCFP 455 (507)
Q Consensus 444 ~dg~i~iw~~~~ 455 (507)
.||.+.|=++..
T Consensus 351 YDGRviIs~V~r 362 (370)
T KOG1007|consen 351 YDGRVIISSVPR 362 (370)
T ss_pred cCceEEeecCCh
Confidence 999998876643
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-19 Score=145.36 Aligned_cols=277 Identities=15% Similarity=0.296 Sum_probs=200.4
Q ss_pred ccceeeeeeCC----CCEEEEE-----cCCeEEEEECC--CCceeEEEecCCCCCCceEEEEEccCC-----CeEEEEeC
Q psy8285 165 DFYTSGLDWGY----HDTLAVA-----LDTSVYTWNTK--TNKTQLLVEYPTYDNAYISCVAWKPRT-----TDLAVTNT 228 (507)
Q Consensus 165 ~~~i~~~~~s~----~~~~~~~-----~~~~i~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~ 228 (507)
.+.+.+++||. ...+|.| ..+.|.|..+. +++......+. |.-+++.+.|.|+. +.||+
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd--~~YP~tK~~wiPd~~g~~pdlLAT--- 118 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFD--HPYPVTKLMWIPDSKGVYPDLLAT--- 118 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCC--CCCCccceEecCCccccCcchhhc---
Confidence 44567889983 2355554 35667766554 45554444444 88999999999987 24443
Q ss_pred CCCcEEEEeCCCce--e--EEE-----EeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCC--cCceeeecCCCc
Q psy8285 229 CTEYIDLWHEQEER--L--IQK-----LRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHS--DYPTAITREGDV 294 (507)
Q Consensus 229 ~dg~i~iwd~~~~~--~--~~~-----~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~ 294 (507)
.+..+++|.+...+ . ... -..+..+++++.| +.++|.+++-|-+..|||+.++. .....+..|..+
T Consensus 119 s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKE 198 (364)
T KOG0290|consen 119 SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKE 198 (364)
T ss_pred ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcc
Confidence 35689999987422 1 111 1246778999999 68999999999999999999863 246678899999
Q ss_pred eEEEEEcCCCC-EEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC-
Q psy8285 295 VCGLKWSPNGR-YLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG- 371 (507)
Q Consensus 295 v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~- 371 (507)
|..++|...+. .+|+.+ ||.+++||++..+....+..-.....+...++|++...+++++-.. ....|.|.|++..
T Consensus 199 V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~-dS~~V~iLDiR~P~ 277 (364)
T KOG0290|consen 199 VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAM-DSNKVVILDIRVPC 277 (364)
T ss_pred eeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhc-CCceEEEEEecCCC
Confidence 99999998654 567766 8999999999875555555544446788899999998888776642 3568999999875
Q ss_pred CeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc------EEEEeeccccceeEEEECC-CCCEEEEEe
Q psy8285 372 KEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH------LIEELKIHQERILSAVLSP-DQTCVAAAS 443 (507)
Q Consensus 372 ~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~------~~~~~~~~~~~i~~~~~s~-~~~~l~s~~ 443 (507)
.++..++.| +.|+.++|.|....-+++ +++|..+.+||+...- ++..+. -.+.|+.+.|++ .+.+++.+.
T Consensus 278 tpva~L~~H~a~VNgIaWaPhS~~hict-aGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 278 TPVARLRNHQASVNGIAWAPHSSSHICT-AGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred cceehhhcCcccccceEecCCCCceeee-cCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe
Confidence 466777777 789999999986655444 7789999999997532 233333 467899999997 456777665
Q ss_pred CCCcEEE
Q psy8285 444 ADETISI 450 (507)
Q Consensus 444 ~dg~i~i 450 (507)
. +.+.|
T Consensus 356 ~-kklei 361 (364)
T KOG0290|consen 356 G-KKLEI 361 (364)
T ss_pred c-CeeeE
Confidence 4 34443
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-19 Score=154.71 Aligned_cols=246 Identities=21% Similarity=0.317 Sum_probs=183.1
Q ss_pred CCCceEEEEEccCCC-eEEEEeCCCCcEEEEeCCCce---------eEEEEeecCccEEEEEe--eCCEEEEEecCCeEE
Q psy8285 207 DNAYISCVAWKPRTT-DLAVTNTCTEYIDLWHEQEER---------LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNIL 274 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~-~l~~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~ 274 (507)
...++..+.|.++.. .++++ +.|..|++|.++.+. .+..+..|...|+++.| +|++|++|+.+|.|.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~-G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATA-GGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF 90 (434)
T ss_pred CCCceEEEEeccCcccceecc-cCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence 346789999998876 88888 899999999876432 34456679999999999 577999999999999
Q ss_pred EEECC--------C-----C--CcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCC
Q psy8285 275 HYDVR--------T-----H--SDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSA 338 (507)
Q Consensus 275 i~d~~--------~-----~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~ 338 (507)
+|... + . ....+.+.+|...|+.++|+|+++++++++ |+.+++||+..+ .....+..|...
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G---~l~~~~~dh~~y 167 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG---QLLAILDDHEHY 167 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc---eeEeeccccccc
Confidence 99876 2 1 012345678999999999999999999999 899999999999 888888999999
Q ss_pred eeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeee--------------------cC----CCeEEEEECCCCCe
Q psy8285 339 VKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK--------------------TD----SQVTSILWSEQYRE 394 (507)
Q Consensus 339 v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--------------------~~----~~i~~~~~s~~~~~ 394 (507)
+..++|.|-++++..-+. |...+.+++...+.++... +. .-...++|+|+|..
T Consensus 168 vqgvawDpl~qyv~s~s~---dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 168 VQGVAWDPLNQYVASKSS---DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL 244 (434)
T ss_pred cceeecchhhhhhhhhcc---CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence 999999998866655444 6666666554332221111 00 12345666676665
Q ss_pred EEEEe-------------------------------------------------------------------ccCCCeEE
Q psy8285 395 LVTSH-------------------------------------------------------------------GKQDCSLK 407 (507)
Q Consensus 395 l~~~~-------------------------------------------------------------------g~~d~~i~ 407 (507)
+++-. -...+.|+
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svy 324 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVY 324 (434)
T ss_pred EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEE
Confidence 55421 01134566
Q ss_pred EEeCCCccEEEEee-ccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 408 MWEYPRLHLIEELK-IHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 408 v~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
+||..+.+++.... -|-..|++++|++||..|+..|.||...+-.+++.+.-
T Consensus 325 vydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 325 VYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred EeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 66666655555443 37788999999999999999999999988888776654
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-17 Score=140.75 Aligned_cols=273 Identities=16% Similarity=0.211 Sum_probs=200.7
Q ss_pred eeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC--CcEEEEeCCCceeE
Q psy8285 168 TSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT--EYIDLWHEQEERLI 244 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d--g~i~iwd~~~~~~~ 244 (507)
++.+.|+.+. +++.+.....++|+.+.... ...... ....|..+-|+. .++|.. +.+ ..+++++.+.+..+
T Consensus 8 i~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k--~~~~~~-~~~~IvEmLFSS--SLvaiV-~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDGYKIFSCSPFEK--CFSKDT-EGVSIVEMLFSS--SLVAIV-SIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred eeeeeeccceeEEEccCCCceeEEecCchHH--hhcccC-CCeEEEEeeccc--ceeEEE-ecCCCceEEEEEcccCceE
Confidence 4556688877 88888777889998876543 111111 345566777764 466666 333 35899998887777
Q ss_pred EEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCcee--eecCCCceEEEEEcCCCCEEEEEe--C-CcEEEEE
Q psy8285 245 QKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTA--ITREGDVVCGLKWSPNGRYLASGS--N-NTVKIWD 319 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d 319 (507)
..+. ...+|.++.++.+.|+++-.+. |+|||+++.+..... ...+...+..+++++.+.++|.-+ + |.|.+||
T Consensus 82 Ce~~-fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred EEEe-cCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence 7665 6678999999988888887654 999999988733222 223556677777777888988755 5 9999999
Q ss_pred cCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC-eEEEEeCCCCCeeeeeecC---CCeEEEEECCCCCeE
Q psy8285 320 FRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ-TVRLWNSMNGKEKCHVKTD---SQVTSILWSEQYREL 395 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~-~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~~~~~l 395 (507)
..+. ++...+..|.+.+.+++|+++| .++++++. .| .||++.+.+|+.+..++.. ..|.+++|+|++++|
T Consensus 160 ~~nl---~~v~~I~aH~~~lAalafs~~G-~llATASe--KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L 233 (391)
T KOG2110|consen 160 TINL---QPVNTINAHKGPLAALAFSPDG-TLLATASE--KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL 233 (391)
T ss_pred cccc---eeeeEEEecCCceeEEEECCCC-CEEEEecc--CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence 9987 8899999999999999999999 67777774 55 4899999999999999876 468999999999999
Q ss_pred EEEeccCCCeEEEEeCCCccE---------------------------E----------EEeeccccc-eeEEEEC--CC
Q psy8285 396 VTSHGKQDCSLKMWEYPRLHL---------------------------I----------EELKIHQER-ILSAVLS--PD 435 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d~~~~~~---------------------------~----------~~~~~~~~~-i~~~~~s--~~ 435 (507)
++ .+..++|+||.+..... + ...+..... -..+.+. +.
T Consensus 234 ~~--sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~ 311 (391)
T KOG2110|consen 234 AA--SSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQK 311 (391)
T ss_pred EE--ecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCC
Confidence 99 67889999998753210 0 000000111 1223343 46
Q ss_pred CCEEEEEeCCCcEEEEecCCC
Q psy8285 436 QTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 436 ~~~l~s~~~dg~i~iw~~~~~ 456 (507)
..++..++.||.++.|.+...
T Consensus 312 ~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 312 IPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred CCEEEEEEcCCeEEEEEcCCC
Confidence 678889999999999999764
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=163.43 Aligned_cols=245 Identities=17% Similarity=0.246 Sum_probs=189.3
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC--------ceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEE
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE--------ERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHY 276 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~ 276 (507)
|...|+.++|.|....|+++ +.||.+++|+++. -+++.++.+|.++|.|++. ++..+++|+.||+|+.|
T Consensus 293 ~~d~ir~l~~~~sep~lit~-sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 293 HDDCIRALAFHPSEPVLITA-SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred chhhhhhhhcCCCCCeEEEe-ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 88899999999999999999 9999999999932 2567789999999999999 79999999999999999
Q ss_pred ECCCCC---------cCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCC-eeeecCCCCCeeEEEEc
Q psy8285 277 DVRTHS---------DYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRP-QVNNQCHLSAVKAIAWC 345 (507)
Q Consensus 277 d~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~ 345 (507)
++.... .....+.+|.+.++.+++++....|++++ ||++++|+.... .+ ........+....+.+-
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~---~~~~f~~~~e~g~Plsvd~~ 448 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE---SPCTFGEPKEHGYPLSVDRT 448 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCc---CccccCCccccCCcceEeec
Confidence 665221 23456789999999999999888899988 899999998775 33 11111122334455554
Q ss_pred cCCCc-EEEEEccCCCCeEEEEeCCCCCeeeeeecC--------CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE
Q psy8285 346 PWEPT-LLATGGGICDQTVRLWNSMNGKEKCHVKTD--------SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL 416 (507)
Q Consensus 346 ~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--------~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~ 416 (507)
..... .+++.. -+.-.++++.....+..+... ..+..+.++|.....++ +.+|+.|+++|..++++
T Consensus 449 ss~~a~~~~s~~---~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~--~hed~~Ir~~dn~~~~~ 523 (577)
T KOG0642|consen 449 SSRPAHSLASFR---FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFT--AHEDRSIRFFDNKTGKI 523 (577)
T ss_pred cchhHhhhhhcc---cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEe--cccCCceeccccccccc
Confidence 33212 222111 233333444444444433321 35788999999998888 78999999999999999
Q ss_pred EEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccc
Q psy8285 417 IEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKR 460 (507)
Q Consensus 417 ~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 460 (507)
+.....|...++++++.|+|.+|++++.||.+++|++.......
T Consensus 524 l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 524 LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred chheeeccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence 99999999999999999999999999999999999997655443
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-19 Score=160.81 Aligned_cols=258 Identities=17% Similarity=0.244 Sum_probs=181.6
Q ss_pred EEEEcc--CC-CeEEEEeCCCCcEEEEeCCCcee------EEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCC
Q psy8285 213 CVAWKP--RT-TDLAVTNTCTEYIDLWHEQEERL------IQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTH 281 (507)
Q Consensus 213 ~~~~~~--~~-~~l~~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~ 281 (507)
+..|++ +. ..|+.+ .++|.|.++|...... +.....|...|.++.| ....|++++.|.++++||+++.
T Consensus 54 ~~sFs~~~n~eHiLava-dE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVA-DEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred cccccCCCCccceEEEe-cCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 345543 22 456666 9999999999875432 2455679999999999 5678999999999999999987
Q ss_pred CcCce--eeecCCCceEEEEEcCCCC-EEEEEe-CCcEEEEEcCCCCC------------------------CCCeeeec
Q psy8285 282 SDYPT--AITREGDVVCGLKWSPNGR-YLASGS-NNTVKIWDFRQLDA------------------------KRPQVNNQ 333 (507)
Q Consensus 282 ~~~~~--~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~i~i~d~~~~~~------------------------~~~~~~~~ 333 (507)
+ ... .+.+|...|.+++|.|+.. .|++|+ ||.|.|||++.... .+.+....
T Consensus 133 ~-l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 133 R-LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred e-eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 6 333 4789999999999999765 567777 79999999985410 01112223
Q ss_pred CCCCCeeE---EEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeee--------cC----CCeEEEEECCCCCeEEEE
Q psy8285 334 CHLSAVKA---IAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK--------TD----SQVTSILWSEQYRELVTS 398 (507)
Q Consensus 334 ~~~~~v~~---~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--------~~----~~i~~~~~s~~~~~l~~~ 398 (507)
.+...+.+ +.+..|...|+.++.. |+.|++||++......... .+ ..+.++.....|.+|++
T Consensus 212 A~s~ti~ssvTvv~fkDe~tlaSaga~--D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A- 288 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDESTLASAGAA--DSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA- 288 (720)
T ss_pred cccCceeeeeEEEEEeccceeeeccCC--CcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE-
Confidence 34444555 5555666566665554 9999999999765433221 11 25788888888999999
Q ss_pred eccCCCeEEEEeCCCc--cEEEEeeccccc--eeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccce--eecCCCcceE
Q psy8285 399 HGKQDCSLKMWEYPRL--HLIEELKIHQER--ILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKA--RQVGSGSSLE 472 (507)
Q Consensus 399 ~g~~d~~i~v~d~~~~--~~~~~~~~~~~~--i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~ 472 (507)
...|+.|+.|++.+. .++..+.++... -..-..+||+.+|++|+.|...++|.+.+.+..... .+...+..+.
T Consensus 289 -sCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~ 367 (720)
T KOG0321|consen 289 -SCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVR 367 (720)
T ss_pred -EecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEe
Confidence 556999999999864 345555544322 112245899999999999999999999987655433 2334455666
Q ss_pred Eeec
Q psy8285 473 FAIL 476 (507)
Q Consensus 473 ~~~~ 476 (507)
|.+.
T Consensus 368 w~pS 371 (720)
T KOG0321|consen 368 WLPS 371 (720)
T ss_pred eccc
Confidence 6553
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-18 Score=146.78 Aligned_cols=225 Identities=15% Similarity=0.253 Sum_probs=166.1
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe---ecCccE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR---THMHQV 254 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v 254 (507)
++++|.-|.|+|.|+.+++....+.. |...|..+.|.|+...|+.+++.|..|++|++++..++..+. +|...|
T Consensus 108 la~~G~~GvIrVid~~~~~~~~~~~g---hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV 184 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVSGQCSKNYRG---HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV 184 (385)
T ss_pred EEeecceeEEEEEecchhhhccceec---cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence 55667899999999999887665544 889999999999986666555999999999999999998875 599999
Q ss_pred EEEEe--eCCEEEEEecCCeEEEEECCCCCcC-----c----------------------eeeecCCCceEEEEEcCCCC
Q psy8285 255 IAMCW--NGNLLSCGTIGGNILHYDVRTHSDY-----P----------------------TAITREGDVVCGLKWSPNGR 305 (507)
Q Consensus 255 ~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~-----~----------------------~~~~~~~~~v~~~~~~~~~~ 305 (507)
.++.| ++.+|++++.|.++++|++...+.. . .....|...|-|+.|- |.
T Consensus 185 LSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd 262 (385)
T KOG1034|consen 185 LSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GD 262 (385)
T ss_pred EEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hh
Confidence 99999 7899999999999999999843200 0 0122355556666665 46
Q ss_pred EEEEEe-CCcEEEEEcCC-CC----------CCCCeeeecCCCCCeeEEEE--ccCCCcEEEEEccCCCCeEEEEeCCCC
Q psy8285 306 YLASGS-NNTVKIWDFRQ-LD----------AKRPQVNNQCHLSAVKAIAW--CPWEPTLLATGGGICDQTVRLWNSMNG 371 (507)
Q Consensus 306 ~l~~~~-d~~i~i~d~~~-~~----------~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~d~~i~i~d~~~~ 371 (507)
++++-+ ++.|..|.... .+ ....+..+.-....++-+.| .|.+ .+++.+.. .|.+.+||++..
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq--~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQ--SGKVYVWDLDNN 339 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccC--CCcEEEEECCCC
Confidence 788877 79999998732 11 11122333334445555554 5555 45666654 899999999987
Q ss_pred Ceee--eeec---CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 372 KEKC--HVKT---DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 372 ~~~~--~~~~---~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
++.. ++.+ ...|...+|+.|+..|+. ..+|+.|.-||..
T Consensus 340 ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~--vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 340 EPPKCTTLTHSKSGSTVRQTSFSRDGSILVL--VCDDGTVWRWDRV 383 (385)
T ss_pred CCccCceEEeccccceeeeeeecccCcEEEE--EeCCCcEEEEEee
Confidence 7632 2222 257999999999999999 6789999999853
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.3e-19 Score=147.34 Aligned_cols=286 Identities=17% Similarity=0.257 Sum_probs=176.1
Q ss_pred eeeCCCC--EEE-EEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE
Q psy8285 171 LDWGYHD--TLA-VALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 171 ~~~s~~~--~~~-~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~ 247 (507)
+.|+.|. ++. ...++.|.+|++...+....++. ..+++.+++|+|+|+.++..+..+-.|.+|.+.+.+... +
T Consensus 54 ieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde---g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~ 129 (447)
T KOG4497|consen 54 IEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE---GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-L 129 (447)
T ss_pred eeeeccceeeeeeeeccceEEEEEeecceeEEEecc---CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-e
Confidence 4555544 333 35788999999987776555443 678999999999998887775889999999998865433 2
Q ss_pred eecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCC--cCceeeecCCCceEEEEEcCCCCEEEEEeC---CcEEEEEc
Q psy8285 248 RTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHS--DYPTAITREGDVVCGLKWSPNGRYLASGSN---NTVKIWDF 320 (507)
Q Consensus 248 ~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d---~~i~i~d~ 320 (507)
+-....+..++| ||++.+.+++......+.+...+ .....+.-..-..+.+.|+|||+.|++-.+ -.|..|..
T Consensus 130 ~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~ 209 (447)
T KOG4497|consen 130 PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER 209 (447)
T ss_pred cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeee
Confidence 222333456666 78877777643221111111000 011222223334455666666666654331 22222211
Q ss_pred CCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC----------------------------
Q psy8285 321 RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK---------------------------- 372 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---------------------------- 372 (507)
.-.+..++|+|.+ ++++.|+ +|+.+|+.+--+.+
T Consensus 210 ---------------~lG~k~v~wsP~~-qflavGs--yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~q 271 (447)
T KOG4497|consen 210 ---------------GLGLKFVEWSPCN-QFLAVGS--YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQ 271 (447)
T ss_pred ---------------ccceeEEEecccc-ceEEeec--cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhh
Confidence 1234556666655 4444444 36655554322110
Q ss_pred --------------------------------eeeeee------cC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 373 --------------------------------EKCHVK------TD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 373 --------------------------------~~~~~~------~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
.+..++ .+ -.+..++|++|..++++-....-+.+-+||++.
T Consensus 272 l~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~ 351 (447)
T KOG4497|consen 272 LLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN 351 (447)
T ss_pred hcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh
Confidence 011111 11 246779999999999995444457899999988
Q ss_pred ccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecCCCcceEEeeccCc
Q psy8285 414 LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAILKQP 479 (507)
Q Consensus 414 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (507)
.+....+. ...+|....|+|....|+.+.....+++|.......+........+..+.|..++..
T Consensus 352 l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~ 416 (447)
T KOG4497|consen 352 LKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEF 416 (447)
T ss_pred hhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcE
Confidence 77655554 467899999999998898888888899999988666666555556666666665544
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-17 Score=140.81 Aligned_cols=242 Identities=14% Similarity=0.169 Sum_probs=181.3
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEeeCCEEEEEecCC--eEEEEECCCCCcC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGG--NILHYDVRTHSDY 284 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~ 284 (507)
....+..+.|+.+...|.++ +.|| .++|.................|..+-|+..++|..+.+. .+++++.+.....
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvG-s~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVG-SKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CCcceeeeeeccceeEEEcc-CCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceE
Confidence 34557777899888888887 7777 577777655443333334455677777888888777654 4888888866533
Q ss_pred ceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEE
Q psy8285 285 PTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVR 364 (507)
Q Consensus 285 ~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~ 364 (507)
.... ....|.++.++. +.|+++-...|+|||+++.+....+.....+...+.++++++.+.++..=+ ....|.|.
T Consensus 82 Ce~~--fpt~IL~VrmNr--~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~-s~t~GdV~ 156 (391)
T KOG2110|consen 82 CEIF--FPTSILAVRMNR--KRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPG-STTSGDVV 156 (391)
T ss_pred EEEe--cCCceEEEEEcc--ceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecC-CCCCceEE
Confidence 3322 345788888864 467777766799999999833333333334555677777776664554443 34579999
Q ss_pred EEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCe-EEEEeCCCccEEEEeeccc--cceeEEEECCCCCEEE
Q psy8285 365 LWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCS-LKMWEYPRLHLIEELKIHQ--ERILSAVLSPDQTCVA 440 (507)
Q Consensus 365 i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~-i~v~d~~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~ 440 (507)
+||+.+-++...+..| +.+.+++|+++|.+||+ +++.|+ ||||.+.+|+.+.+++... ..|.+++|+|++++|+
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llAT--ASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~ 234 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLAT--ASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLA 234 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEE--eccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEE
Confidence 9999999999999877 78999999999999999 777775 7999999999999997543 4589999999999999
Q ss_pred EEeCCCcEEEEecCCCC
Q psy8285 441 AASADETISIWNCFPRD 457 (507)
Q Consensus 441 s~~~dg~i~iw~~~~~~ 457 (507)
+.|..++|+||++....
T Consensus 235 ~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 235 ASSNTETVHIFKLEKVS 251 (391)
T ss_pred EecCCCeEEEEEecccc
Confidence 99999999999998654
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=155.18 Aligned_cols=256 Identities=13% Similarity=0.294 Sum_probs=191.9
Q ss_pred eeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEE-EEEcc-------CCCeEEEEeCCCCcEEEEeC
Q psy8285 168 TSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISC-VAWKP-------RTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~-~~~~~-------~~~~l~~~~~~dg~i~iwd~ 238 (507)
++++.|+.+. ++.++.|..+.+|...+.....+...+ ...+.. +..-+ ....++.+ +.||.+.+.+
T Consensus 17 vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p---~df~pt~~h~~~rs~~~g~~~d~~~i~-s~DGkf~il~- 91 (737)
T KOG1524|consen 17 VCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLP---DDFVPTDMHLGGRSSGGGKGSDTLLIC-SNDGRFVILN- 91 (737)
T ss_pred EEeecccccceEEEeccCceEEEeecccchhhhhhhCC---cccCCccccccccccCCCCCcceEEEE-cCCceEEEec-
Confidence 4588998876 888888888888876554444444332 122221 11111 12567777 8999999987
Q ss_pred CCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEE
Q psy8285 239 QEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVK 316 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~ 316 (507)
+.++..+.+..|.+.+.+-.| +|.-|++++.||.|++|.-... ....+.....+|+|++|.|+.+-++.+..+.+.
T Consensus 92 k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~ 169 (737)
T KOG1524|consen 92 KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRSTVVQNEESIRCARWAPNSNSIVFCQGGHIS 169 (737)
T ss_pred ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHHHHhhcCceeEEEEECCCCCceEEecCCeEE
Confidence 456777788899999999999 7999999999999999986643 355566677899999999999888888777888
Q ss_pred EEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeee-ecCCCeEEEEECCCCCeE
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHV-KTDSQVTSILWSEQYREL 395 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~i~~~~~s~~~~~l 395 (507)
|=.+... ..+..++.|.+-|.++.|+|.. .+++++++ |-..++||.. |..+..- .+..+|++++|.|+ +.+
T Consensus 170 IKpL~~n---~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGE--D~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~ 241 (737)
T KOG1524|consen 170 IKPLAAN---SKIIRWRAHDGLVLSLSWSTQS-NIIASGGE--DFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDY 241 (737)
T ss_pred Eeecccc---cceeEEeccCcEEEEeecCccc-cceeecCC--ceeEEeeccc-CcccccCChhccceeeeeeccc-cce
Confidence 8777765 6777888999999999999987 68888876 9999999965 4444443 44479999999999 555
Q ss_pred EEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 396 VTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
+. ++ -+.+++ -+...+.|..++||+||..++.|+..|.+.+=.
T Consensus 242 ~v--~S-~nt~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 242 LL--WS-YNTARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred ee--ee-eeeeee-----------cCCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 55 43 233441 112467899999999999999999999876643
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=141.57 Aligned_cols=278 Identities=18% Similarity=0.255 Sum_probs=186.4
Q ss_pred ccceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 165 DFYTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 165 ~~~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
...++++.|..++ ++++..-|.|.+|++++......+.+. +...|+.+.--|+ ..|.+- +.|+.+.+|++..+..
T Consensus 14 ~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~--g~~~it~lq~~p~-d~l~tq-gRd~~L~lw~ia~s~~ 89 (323)
T KOG0322|consen 14 SSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLF--GRLFITNLQSIPN-DSLDTQ-GRDPLLILWTIAYSAF 89 (323)
T ss_pred cchheehhhccchhhhcccccceEEEEEeecCccchhhhhh--ccceeeceeecCC-cchhhc-CCCceEEEEEccCcce
Confidence 3346677777766 888889999999999988776666633 6788999999997 466666 7999999999987554
Q ss_pred EEEEeecCccEEEEEeeCC-----------EEEEEecCCe-EEEEECCCCCcC---ceeeecCCCceEEEEEcC-CC-CE
Q psy8285 244 IQKLRTHMHQVIAMCWNGN-----------LLSCGTIGGN-ILHYDVRTHSDY---PTAITREGDVVCGLKWSP-NG-RY 306 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~~~~-----------~l~~~~~dg~-i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~-~~-~~ 306 (507)
+.. |.-.+.++.|-.. .++.-++... +.+-|....... ........+.+.|..+.. ++ .+
T Consensus 90 i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~ 166 (323)
T KOG0322|consen 90 ISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTF 166 (323)
T ss_pred EEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceE
Confidence 332 3333444444111 1221111100 111121111000 000112234566666433 23 34
Q ss_pred EEE-EeC-CcEEEEEcCCCC-------CCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC--Cee-
Q psy8285 307 LAS-GSN-NTVKIWDFRQLD-------AKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG--KEK- 374 (507)
Q Consensus 307 l~~-~~d-~~i~i~d~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--~~~- 374 (507)
++. |.+ |.+.+||+..+. ..+.......|..+|.++.+.+.-..=+. ++ .+..+..|++... .+.
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGis-gg--a~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGIS-GG--ADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcC-CC--ccccceeeeeccccCcccc
Confidence 444 444 999999998851 11233344568899999999865433333 22 2677888887543 221
Q ss_pred -eeeec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 375 -CHVKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 375 -~~~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
..+.. +..+..+.+-||++.+|+ ++.|+.|+||..++..++..++-|...|++++|+|+...+|+++.|++|.+|+
T Consensus 244 ~~e~~lknpGv~gvrIRpD~KIlAT--AGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 244 RKEITLKNPGVSGVRIRPDGKILAT--AGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred cceEEecCCCccceEEccCCcEEee--cccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 12222 346889999999999999 78999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q psy8285 453 CF 454 (507)
Q Consensus 453 ~~ 454 (507)
+.
T Consensus 322 LY 323 (323)
T KOG0322|consen 322 LY 323 (323)
T ss_pred cC
Confidence 73
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-18 Score=139.88 Aligned_cols=230 Identities=18% Similarity=0.316 Sum_probs=172.6
Q ss_pred cccccceeeeeeCCCC------EEEEEcCCeEEEEECCC--CceeEEE-----ecCCCCCCceEEEEEccCCCeEEEEeC
Q psy8285 162 IINDFYTSGLDWGYHD------TLAVALDTSVYTWNTKT--NKTQLLV-----EYPTYDNAYISCVAWKPRTTDLAVTNT 228 (507)
Q Consensus 162 ~~~~~~i~~~~~s~~~------~~~~~~~~~i~iw~~~~--~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~ 228 (507)
+...+.++.+.|.|+. ++| +.+..+++|.+.. .+..... .-.. +..++++..|+.-...++..++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLA-Ts~D~LRlWri~~ee~~~~~~~~L~~~kns~-~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLA-TSSDFLRLWRIGDEESRVELQSVLNNNKNSE-FCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhh-cccCeEEEEeccCcCCceehhhhhccCcccc-cCCcccccccccCCcceeEeec
Confidence 4445667789998863 444 4566899999874 2222111 1112 6788999999876655444449
Q ss_pred CCCcEEEEeCCCce---eEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecC--CCceEEEEE
Q psy8285 229 CTEYIDLWHEQEER---LIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITRE--GDVVCGLKW 300 (507)
Q Consensus 229 ~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~ 300 (507)
-|.+..|||++++. ....+-.|..+|.+++| .-+.||+.+.||.+++||++..+......... ..+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999999863 36677889999999999 35799999999999999999876433333222 456778899
Q ss_pred cCC-CCEEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC-----
Q psy8285 301 SPN-GRYLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK----- 372 (507)
Q Consensus 301 ~~~-~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~----- 372 (507)
+++ -+++|+-. | ..|.|.|++.. ..++..+.+|.+.|+.++|.|.....+++++. |..+.+||+...-
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P--~tpva~L~~H~a~VNgIaWaPhS~~hictaGD--D~qaliWDl~q~~~~~~~ 326 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVP--CTPVARLRNHQASVNGIAWAPHSSSHICTAGD--DCQALIWDLQQMPRENGE 326 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCC--CcceehhhcCcccccceEecCCCCceeeecCC--cceEEEEecccccccCCC
Confidence 884 46677765 6 89999999986 47888999999999999999999888888875 8999999997532
Q ss_pred -eeeeeecCCCeEEEEECCC-CCeEEE
Q psy8285 373 -EKCHVKTDSQVTSILWSEQ-YRELVT 397 (507)
Q Consensus 373 -~~~~~~~~~~i~~~~~s~~-~~~l~~ 397 (507)
++......++|..++|++. ...++.
T Consensus 327 dPilay~a~~EVNqi~Ws~~~~Dwiai 353 (364)
T KOG0290|consen 327 DPILAYTAGGEVNQIQWSSSQPDWIAI 353 (364)
T ss_pred CchhhhhccceeeeeeecccCCCEEEE
Confidence 3444455678999999964 556666
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.6e-18 Score=145.54 Aligned_cols=241 Identities=16% Similarity=0.258 Sum_probs=176.5
Q ss_pred ceeeeeeCCCC-EEE-EEcCCeEEEEECC--------C------CceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC
Q psy8285 167 YTSGLDWGYHD-TLA-VALDTSVYTWNTK--------T------NKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT 230 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~-~~~~~~i~iw~~~--------~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d 230 (507)
.|+++.|+|++ ++| ++.+|.|.+|... + ........+.+ |...|..++|+|++.+++++ +.|
T Consensus 67 aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~-s~d 144 (434)
T KOG1009|consen 67 AVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSG-SVD 144 (434)
T ss_pred eeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCCceeeee-ecc
Confidence 47789999998 555 4578899999876 2 11333445566 99999999999999999999 999
Q ss_pred CcEEEEeCCCceeEEEEeecCccEEEEEee--CCEEEEEecCCeEEEEECCCCCcCc------------------eeeec
Q psy8285 231 EYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCGTIGGNILHYDVRTHSDYP------------------TAITR 290 (507)
Q Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~------------------~~~~~ 290 (507)
..+++||+..|.....+..|..-+..++|| ++++++-+.|...+.+.+...+... .....
T Consensus 145 ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLf 224 (434)
T KOG1009|consen 145 NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLF 224 (434)
T ss_pred ceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeee
Confidence 999999999999999999999999999995 7788888888766666554332100 00001
Q ss_pred CC----CceEEEEEcCCCCEEEEEe---C--Cc-----EEEEEcCCCCCCCCeeeecCCCCCeeEEEEccC---------
Q psy8285 291 EG----DVVCGLKWSPNGRYLASGS---N--NT-----VKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW--------- 347 (507)
Q Consensus 291 ~~----~~v~~~~~~~~~~~l~~~~---d--~~-----i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------- 347 (507)
|. .-.+.++|+|+|.++++.. + +. .++|+-.. ..++...+.....++..+.|+|-
T Consensus 225 hDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~--l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~ 302 (434)
T KOG1009|consen 225 HDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKD--LKRPAARLPSPKKPALAVRFSPVYYELRPLSS 302 (434)
T ss_pred ecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccc--ccCceeecCCCCcceEEEEeeeeEEEeccccc
Confidence 11 2245688999999988743 1 33 34554432 34666677767777777777652
Q ss_pred --------CCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC--CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE
Q psy8285 348 --------EPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD--SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL 416 (507)
Q Consensus 348 --------~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~ 416 (507)
-+.+++.+. ...+++||.++.+++.....- ..++.++|+++|..++. .+.||...+..+...++
T Consensus 303 ~~~~~~lpyrlvfaiAt---~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~v--SS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 303 EKFLFVLPYRLVFAIAT---KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLV--SSTDGFCSLVTFEPWEL 376 (434)
T ss_pred cccccccccceEEEEee---cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEE--eccCCceEEEEEcchhc
Confidence 123456665 789999999998888776543 78999999999999999 68899887777665443
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=143.50 Aligned_cols=280 Identities=14% Similarity=0.186 Sum_probs=205.4
Q ss_pred cccceeeeeeCCCC--EEEEEcCCeEEEEECCCC------ceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEE
Q psy8285 164 NDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTN------KTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDL 235 (507)
Q Consensus 164 ~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~i 235 (507)
+--+|+++.||.++ +++++.|..+++|++... +++.+...+ |...|.|++|....+.++++ ..+++|.+
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~--H~SNIF~L~F~~~N~~~~SG-~~~~~VI~ 131 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHP--HRSNIFSLEFDLENRFLYSG-ERWGTVIK 131 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCc--cccceEEEEEccCCeeEecC-CCcceeEe
Confidence 34579999999987 556678999999998642 333333322 67899999999988899988 99999999
Q ss_pred EeCCCceeEEEEee--cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCce--eeecCCCceEEEEEcCCC-CEEE
Q psy8285 236 WHEQEERLIQKLRT--HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPT--AITREGDVVCGLKWSPNG-RYLA 308 (507)
Q Consensus 236 wd~~~~~~~~~~~~--~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~~v~~~~~~~~~-~~l~ 308 (507)
-|+.+.+.+..+.. ..+.|+.+.. -.+.|++.+.++.|.+||.+....+.. ...........+.|+|.. .+|+
T Consensus 132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~ 211 (609)
T KOG4227|consen 132 HDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALIL 211 (609)
T ss_pred eecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEE
Confidence 99999887776653 3347888777 478899999999999999997653322 223345567889999965 4566
Q ss_pred EEeC-CcEEEEEcCCCCCCCCeeee------cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe-eeeeecC
Q psy8285 309 SGSN-NTVKIWDFRQLDAKRPQVNN------QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE-KCHVKTD 380 (507)
Q Consensus 309 ~~~d-~~i~i~d~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~~ 380 (507)
+.+. +-+-+||.+... .++... ......-....|+|.|.++++.-. ...-.+||+-+.++ +..+.++
T Consensus 212 ~~~~~~G~~~~D~R~~~--~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR---~~~P~~~D~~S~R~~V~k~D~N 286 (609)
T KOG4227|consen 212 VNSETGGPNVFDRRMQA--RPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR---GKCPLYFDFISQRCFVLKSDHN 286 (609)
T ss_pred eccccCCCCceeecccc--chHHhhhccccCcccchhhhheeeCCCCCeehhhhc---cCCCEEeeeecccceeEeccCC
Confidence 6665 899999998752 222211 111122357889999988887654 45566788776443 3334322
Q ss_pred -------CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc-----------------------cEEEEeeccccceeEE
Q psy8285 381 -------SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL-----------------------HLIEELKIHQERILSA 430 (507)
Q Consensus 381 -------~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~-----------------------~~~~~~~~~~~~i~~~ 430 (507)
..+.+++|..|.. +++ |+.+-.|++|.+... +.+..+++|..-++.+
T Consensus 287 ~~GY~N~~T~KS~~F~~D~~-v~t--GSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDYT-VAT--GSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCcceeeeeeeeeeeeccee-eec--cCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 1366777876655 777 899999999988531 2345678999999999
Q ss_pred EECCCCCEEEEEeCCCcEEEEecC
Q psy8285 431 VLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 431 ~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
.|+|...+|++.+....++||.-.
T Consensus 364 RF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 364 RFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eecCCcceEeccchhhheeccccc
Confidence 999999999999999999999764
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=138.05 Aligned_cols=220 Identities=23% Similarity=0.359 Sum_probs=167.6
Q ss_pred eEEEEECCCCce-------eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee-EEEEe-----ecCc
Q psy8285 186 SVYTWNTKTNKT-------QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL-IQKLR-----THMH 252 (507)
Q Consensus 186 ~i~iw~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~-~~~~~-----~~~~ 252 (507)
.+.||.+..... ..+..+...+-+.|.|+.|.|++..+++- .|..|.+|++..+.. ...+. .+..
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm--~dn~i~l~~l~ess~~vaev~ss~s~e~~~ 171 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASM--DDNNIVLWSLDESSKIVAEVLSSESAEMRH 171 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe--ccCceEEEEcccCcchheeecccccccccc
Confidence 577998764321 11222221145689999999999999987 599999999988765 33332 2455
Q ss_pred cEEEEEe----eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCE-EEEEeC-CcEEEEEcCCCCCC
Q psy8285 253 QVIAMCW----NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGSN-NTVKIWDFRQLDAK 326 (507)
Q Consensus 253 ~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~d-~~i~i~d~~~~~~~ 326 (507)
..++-.| +++.+++.+ |+++..||+++..+....-..|...|..+.|+|+.++ |++++| |.|++||.+.. .
T Consensus 172 ~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t--k 248 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT--K 248 (370)
T ss_pred eecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--C
Confidence 5666677 577777665 8999999999987777777889999999999998776 666665 99999999975 4
Q ss_pred CCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC-----------------------------eeeee
Q psy8285 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-----------------------------EKCHV 377 (507)
Q Consensus 327 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-----------------------------~~~~~ 377 (507)
.++..+.+|...|.++.|+|...+++.+++. |..|.+|....-. .+.++
T Consensus 249 ~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S--Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty 326 (370)
T KOG1007|consen 249 FPVQELPGHSHWVWAVRFNPEHDQLILSGGS--DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY 326 (370)
T ss_pred ccccccCCCceEEEEEEecCccceEEEecCC--CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence 6888999999999999999999899988876 9999999764311 11123
Q ss_pred ecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 378 KTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 378 ~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
..+ ..|.+++||.-..++++. -+.||.+.|=.++.
T Consensus 327 dehEDSVY~~aWSsadPWiFAS-LSYDGRviIs~V~r 362 (370)
T KOG1007|consen 327 DEHEDSVYALAWSSADPWIFAS-LSYDGRVIISSVPR 362 (370)
T ss_pred cccccceEEEeeccCCCeeEEE-eccCceEEeecCCh
Confidence 233 679999999999998886 68899988866543
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-17 Score=142.36 Aligned_cols=225 Identities=16% Similarity=0.244 Sum_probs=174.1
Q ss_pred cCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-------eeEEEEeecCccEEEEEe---eCCEEEEEecCCe
Q psy8285 203 YPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE-------RLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGN 272 (507)
Q Consensus 203 ~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~ 272 (507)
+.| |.++|..++|+|.+...+++|+.|.+|.||++..+ +.+..+.+|...|.-+.| -.+.|++++.|.+
T Consensus 77 v~G-Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 77 VCG-HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred ccC-ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 345 99999999999987666655599999999998765 456788899999999999 4789999999999
Q ss_pred EEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCC-CeeEEEEccCCCc
Q psy8285 273 ILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLS-AVKAIAWCPWEPT 350 (507)
Q Consensus 273 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 350 (507)
|.+|++.+++.. ..+. |...|+++.|+.||.++++++ |..|+|||.+++ +.+....+|.+ .-..+.|-.++.
T Consensus 156 v~iWnv~tgeal-i~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~---~~v~e~~~heG~k~~Raifl~~g~- 229 (472)
T KOG0303|consen 156 VSIWNVGTGEAL-ITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG---TVVSEGVAHEGAKPARAIFLASGK- 229 (472)
T ss_pred EEEEeccCCcee-eecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCC---cEeeecccccCCCcceeEEeccCc-
Confidence 999999998743 3344 999999999999999999999 799999999998 77776667765 345666777775
Q ss_pred EEEEEc-cCCCCeEEEEeCCCCC---eeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEE-EEeec--c
Q psy8285 351 LLATGG-GICDQTVRLWNSMNGK---EKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLI-EELKI--H 423 (507)
Q Consensus 351 ~~~~~~-~~~d~~i~i~d~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~-~~~~~--~ 423 (507)
++++|- ...++.+-+||..+-+ ....+...+.|.---|.+|.+.++.+ |-.|+.|+-|.+....+. +-+.. .
T Consensus 230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~-GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 230 IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLC-GKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEE-ecCCcceEEEEecCCCceeEEeccccc
Confidence 777663 2237889999976654 34455566778888899999888776 888999999999776532 22211 1
Q ss_pred ccceeEEEECCC
Q psy8285 424 QERILSAVLSPD 435 (507)
Q Consensus 424 ~~~i~~~~~s~~ 435 (507)
..+-..+.|-|.
T Consensus 309 ~epQRG~g~mPK 320 (472)
T KOG0303|consen 309 KEPQRGMGFMPK 320 (472)
T ss_pred CCcccccccccc
Confidence 233455556554
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-15 Score=146.86 Aligned_cols=281 Identities=25% Similarity=0.435 Sum_probs=213.3
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCc-eeEEEecCCCCCCceEEEEE-ccCCC-eEEEEeCCCCcEEEEeCC
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNK-TQLLVEYPTYDNAYISCVAW-KPRTT-DLAVTNTCTEYIDLWHEQ 239 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~-~~~~~-~l~~~~~~dg~i~iwd~~ 239 (507)
...+..+.+.+.+ ++..+.++.+.+|+...+. ........ +...+..+.+ ++++. .++..+..|+.+.+|+..
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 142 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGL--HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS 142 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEecc--CCCceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence 3446778888776 4445579999999998875 33333321 2236777777 78887 455442449999999999
Q ss_pred C-ceeEEEEeecCccEEEEEe--eCCEEEEEec-CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC-EEEEEe-CC
Q psy8285 240 E-ERLIQKLRTHMHQVIAMCW--NGNLLSCGTI-GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR-YLASGS-NN 313 (507)
Q Consensus 240 ~-~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~ 313 (507)
. ......+..|...+..++| ++..+++++. ++.+++|++.... ....+..|...+.+++|+|++. .+++++ |+
T Consensus 143 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ 221 (466)
T COG2319 143 TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDG 221 (466)
T ss_pred CCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEEEEecCCC
Confidence 8 7888889999999999999 5667888875 9999999999744 5666777999999999999998 555535 69
Q ss_pred cEEEEEcCCCCCCCCee-eecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe-eeeeec-CCCeEEEEECC
Q psy8285 314 TVKIWDFRQLDAKRPQV-NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE-KCHVKT-DSQVTSILWSE 390 (507)
Q Consensus 314 ~i~i~d~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~-~~~i~~~~~s~ 390 (507)
.|++||...+ .... .+..|.... ...|+|++ .++++++. |+.+++|++..... ...+.. ...+.++.|.|
T Consensus 222 ~i~~wd~~~~---~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~--d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 294 (466)
T COG2319 222 TIRLWDLSTG---KLLRSTLSGHSDSV-VSSFSPDG-SLLASGSS--DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294 (466)
T ss_pred cEEEEECCCC---cEEeeecCCCCcce-eEeECCCC-CEEEEecC--CCcEEEeeecCCCcEEEEEecCCccEEEEEECC
Confidence 9999988855 5555 577777775 44899998 44445544 99999999987765 444433 37899999999
Q ss_pred CCCeEEEEeccCCCeEEEEeCCCccEEEEee--ccccceeEEEECCCCCEEEEE-eCCCcEEEEecCCCC
Q psy8285 391 QYRELVTSHGKQDCSLKMWEYPRLHLIEELK--IHQERILSAVLSPDQTCVAAA-SADETISIWNCFPRD 457 (507)
Q Consensus 391 ~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~s~-~~dg~i~iw~~~~~~ 457 (507)
++..+++ ++.|+.+.+||..+........ .|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 295 ~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 295 DGKLLAS--GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCCEEEE--eeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 9999988 5666889999998887776665 788889999994332556555 678999999998877
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.2e-16 Score=143.04 Aligned_cols=276 Identities=13% Similarity=0.135 Sum_probs=179.6
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeec-------
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTH------- 250 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~------- 250 (507)
+++.+.|+.|.++|+.+.+....... ......+++++||+++++++...+.+.++|.++.+.++.+...
T Consensus 51 ~yv~~rdg~vsviD~~~~~~v~~i~~----G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~ 126 (369)
T PF02239_consen 51 LYVANRDGTVSVIDLATGKVVATIKV----GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGP 126 (369)
T ss_dssp EEEEETTSEEEEEETTSSSEEEEEE-----SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS
T ss_pred EEEEcCCCeEEEEECCcccEEEEEec----CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccccccccc
Confidence 55567899999999999998777764 4567899999999999998678999999999999999887643
Q ss_pred CccEEEEEe--eCC-EEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCC
Q psy8285 251 MHQVIAMCW--NGN-LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-N-NTVKIWDFRQLDA 325 (507)
Q Consensus 251 ~~~v~~~~~--~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~ 325 (507)
..++.++.. ... ++++.-..+.|.+.|......................|+|++++++++. . +.|-++|.+++
T Consensus 127 ~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~-- 204 (369)
T PF02239_consen 127 ESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG-- 204 (369)
T ss_dssp ---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT--
T ss_pred CCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccc--
Confidence 235556654 445 4444455588988898776433334444556778899999999988876 3 89999998876
Q ss_pred CCCeeeec----CCCCCeeEEE-------Ecc--CCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCC
Q psy8285 326 KRPQVNNQ----CHLSAVKAIA-------WCP--WEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQY 392 (507)
Q Consensus 326 ~~~~~~~~----~~~~~v~~~~-------~~~--~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~ 392 (507)
+....+. .|..+...+- |.. .+...+..-+ ...+.+||..+.+.++.+...+.-..+..+|++
T Consensus 205 -k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig---~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s 280 (369)
T PF02239_consen 205 -KLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIG---TDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDS 280 (369)
T ss_dssp -EEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE-----TTT-STTTBTSEEEEEE-SSSS--EE--TT-
T ss_pred -eEEEEeeccccccccccccccCCCcceEEeeccccceeccccc---CCccccchhhcCeEEEEEECCCCcceeecCCCC
Confidence 3333221 2333333321 211 1222222222 445667888999999999887555888999999
Q ss_pred CeEEEEe--ccCCCeEEEEeCCCccEEEEeeccc-cceeEEEECCCCCEEEEEeCC--CcEEEEecCCCCccccee
Q psy8285 393 RELVTSH--GKQDCSLKMWEYPRLHLIEELKIHQ-ERILSAVLSPDQTCVAAASAD--ETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 393 ~~l~~~~--g~~d~~i~v~d~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~s~~~d--g~i~iw~~~~~~~~~~~~ 463 (507)
+++.+.. +...+.|.++|.++.+.+..+.... ..+..+.|++||+.+..+..+ +.|.+||..+.+....++
T Consensus 281 ~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 281 RYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 9999941 1446899999999998888775432 358999999999977655443 379999999998887765
|
... |
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.8e-19 Score=164.64 Aligned_cols=274 Identities=14% Similarity=0.220 Sum_probs=204.6
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|.||..+|+|..|...|.| +++|+ .|..|+||.++++.|+.+.. |.+.++.++.+
T Consensus 186 LlgH~naVyca~fDrtg~~-Iitgs--dd~lvKiwS~et~~~lAs~rGhs~ditdlavs--------------------- 241 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRY-IITGS--DDRLVKIWSMETARCLASCRGHSGDITDLAVS--------------------- 241 (1113)
T ss_pred HHhhhhheeeeeeccccce-EeecC--ccceeeeeeccchhhhccCCCCccccchhccc---------------------
Confidence 6899999999999999999 99999 89999999999999988766 55554444422
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 242 -------------------------------------------------------------------------------- 241 (1113)
T KOG0644|consen 242 -------------------------------------------------------------------------------- 241 (1113)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
.++ +.+++.|..|++|.+.++.+..++. | |.+.|++++|+|-. ++ +.||++++||.
T Consensus 242 --------------~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr--g-htgavtaiafsP~~----ss-s~dgt~~~wd~ 299 (1113)
T KOG0644|consen 242 --------------SNNTMIAAASNDKVIRVWRLPDGAPVSVLR--G-HTGAVTAIAFSPRA----SS-SDDGTCRIWDA 299 (1113)
T ss_pred --------------hhhhhhhhcccCceEEEEecCCCchHHHHh--c-cccceeeeccCccc----cC-CCCCceEeccc
Confidence 122 4556789999999999998766654 4 99999999999965 55 89999999998
Q ss_pred CCceeEEEE----e-ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCC-CEEEEE
Q psy8285 239 QEERLIQKL----R-THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNG-RYLASG 310 (507)
Q Consensus 239 ~~~~~~~~~----~-~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 310 (507)
+ ...+... . ....-+..+.| ++..+++++.|+.-..|.+.... .+...+.-+.++.|- .+.+++
T Consensus 300 r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~-------~~~~~lif~t~ssd~~~~~~~a 371 (1113)
T KOG0644|consen 300 R-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA-------WRSNLLIFVTRSSDLSSIVVTA 371 (1113)
T ss_pred c-ccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhh-------hhccceEEEeccccccccceee
Confidence 7 1111111 1 11233445555 67888999999988777665321 111122222222232 233444
Q ss_pred e-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeee-cCCCeEEEEE
Q psy8285 311 S-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILW 388 (507)
Q Consensus 311 ~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~ 388 (507)
- +-.+++|++-++ ...+.+.+|...++.+.++|.+..+..+++- ||...|||+-.|.+++... ++..+...+|
T Consensus 372 r~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~--dgst~iwdi~eg~pik~y~~gh~kl~d~kF 446 (1113)
T KOG0644|consen 372 RNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGY--DGSTIIWDIWEGIPIKHYFIGHGKLVDGKF 446 (1113)
T ss_pred eeeeEeeeeecccc---hhhhhhcccccceeeeeecCCCcHhhhhccC--CCceEeeecccCCcceeeecccceeecccc
Confidence 3 588999999998 8888889999999999999999888888774 9999999999998776554 4578889999
Q ss_pred CCCCCeEEEEeccCCCeEEEEeCCCccE
Q psy8285 389 SEQYRELVTSHGKQDCSLKMWEYPRLHL 416 (507)
Q Consensus 389 s~~~~~l~~~~g~~d~~i~v~d~~~~~~ 416 (507)
|++|..++. ...-|.++|.....++.
T Consensus 447 Sqdgts~~l--sd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 447 SQDGTSIAL--SDDHGQLYILGTGQSKS 472 (1113)
T ss_pred CCCCceEec--CCCCCceEEeccCCCcc
Confidence 999999998 66778999987655443
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-17 Score=157.76 Aligned_cols=230 Identities=14% Similarity=0.117 Sum_probs=161.1
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC---CcEEEEeCCCceeE--EEEeecCccEEEEE
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT---EYIDLWHEQEERLI--QKLRTHMHQVIAMC 258 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d---g~i~iwd~~~~~~~--~~~~~~~~~v~~~~ 258 (507)
+..|++||........+.. +...+..+.|+|+|+.|+.+ +.+ ..|++||+.+++.. ..+.++ ...++
T Consensus 183 ~~~i~i~d~dg~~~~~lt~----~~~~v~~p~wSPDG~~la~~-s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~ 254 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNR----SSQPLMSPAWSPDGSKLAYV-SFENKKSQLVVHDLRSGARKVVASFRGH---NGAPA 254 (429)
T ss_pred eEEEEEECCCCCCceEecc----CCCccccceEcCCCCEEEEE-EecCCCcEEEEEeCCCCceEEEecCCCc---cCcee
Confidence 4689999987665433222 67789999999999999987 432 36999999887543 223333 33567
Q ss_pred e--eCCEEEEEe-cCCeEEEE--ECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCeee
Q psy8285 259 W--NGNLLSCGT-IGGNILHY--DVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQVN 331 (507)
Q Consensus 259 ~--~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~ 331 (507)
| |++.|+.+. .+|.+.|| |+.++. ...+..+...+....|+|||+.|+..+ ++...||++..... ....
T Consensus 255 wSPDG~~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~--~~~~ 330 (429)
T PRK01742 255 FSPDGSRLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG--GASL 330 (429)
T ss_pred ECCCCCEEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC--CeEE
Confidence 7 788887764 67765555 665543 455566667788899999999888776 37888888764311 1222
Q ss_pred ecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeC
Q psy8285 332 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEY 411 (507)
Q Consensus 332 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~ 411 (507)
+ .+.. ..+.|+|+|+.+++++. ++ +.+||+.+++....... .....+.|+|+|++|++ ++.++.+.+|++
T Consensus 331 l-~~~~--~~~~~SpDG~~ia~~~~---~~-i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~--~s~~g~~~~l~~ 400 (429)
T PRK01742 331 V-GGRG--YSAQISADGKTLVMING---DN-VVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIY--SSTQGLGKVLQL 400 (429)
T ss_pred e-cCCC--CCccCCCCCCEEEEEcC---CC-EEEEECCCCCeEEecCC-CCCCCceECCCCCEEEE--EEcCCCceEEEE
Confidence 2 2333 46789999987766553 44 56699988875433222 23456889999999999 556787777775
Q ss_pred --CCccEEEEeeccccceeEEEECCC
Q psy8285 412 --PRLHLIEELKIHQERILSAVLSPD 435 (507)
Q Consensus 412 --~~~~~~~~~~~~~~~i~~~~~s~~ 435 (507)
.+++.+..+..|.+.+..++|+|-
T Consensus 401 ~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 401 VSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EECCCCceEEccCCCCCCCCcccCCC
Confidence 357788888888888999999984
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-17 Score=141.93 Aligned_cols=203 Identities=17% Similarity=0.318 Sum_probs=161.7
Q ss_pred EEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCC------cCceeeecCCCceEEEEEcCCC-CEEEEEe-CCc
Q psy8285 246 KLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHS------DYPTAITREGDVVCGLKWSPNG-RYLASGS-NNT 314 (507)
Q Consensus 246 ~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~ 314 (507)
.+.+|.++|..++| +...||+|+.|.+|.||++..+. .+...+.+|...|--++|+|.. +.|++++ |.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 45689999999999 78999999999999999987643 3567788999999999999965 4555555 899
Q ss_pred EEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC--CCeEEEEECCCC
Q psy8285 315 VKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD--SQVTSILWSEQY 392 (507)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~s~~~ 392 (507)
|.+|++.++ ..+.++. |...|+++.|+.+|..+.+++- |+.|+|||.++++.+..-..| .....+.|-.+|
T Consensus 156 v~iWnv~tg---eali~l~-hpd~i~S~sfn~dGs~l~Ttck---DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 156 VSIWNVGTG---EALITLD-HPDMVYSMSFNRDGSLLCTTCK---DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG 228 (472)
T ss_pred EEEEeccCC---ceeeecC-CCCeEEEEEeccCCceeeeecc---cceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence 999999998 7777776 9999999999999976666665 999999999999998877555 356677788888
Q ss_pred CeEEEEecc---CCCeEEEEeCCCccE---EEEeeccccceeEEEECCCCCEEEE-EeCCCcEEEEecCCCCc
Q psy8285 393 RELVTSHGK---QDCSLKMWEYPRLHL---IEELKIHQERILSAVLSPDQTCVAA-ASADETISIWNCFPRDK 458 (507)
Q Consensus 393 ~~l~~~~g~---~d~~i~v~d~~~~~~---~~~~~~~~~~i~~~~~s~~~~~l~s-~~~dg~i~iw~~~~~~~ 458 (507)
. ++++ |. .+..+.+||..+.+. +.++.. .+.|.---|.+|...++. |-.|+.|+.|.+.+..+
T Consensus 229 ~-i~tT-Gfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 229 K-IFTT-GFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred c-eeee-ccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 8 5543 43 467899999776543 334443 455666678898887755 55799999999987763
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-16 Score=128.68 Aligned_cols=230 Identities=15% Similarity=0.181 Sum_probs=172.9
Q ss_pred ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc----------eeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECC
Q psy8285 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE----------RLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVR 279 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~ 279 (507)
.|.+-+|+|.+++|+++ +.+|.|.+..+++. ..+...++|.++++.+.|...+|++++ ||.|+-|..+
T Consensus 12 tvf~qa~sp~~~~l~ag-n~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAG-NLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHHhhCCcceEEEEe-cCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeecc-CceEEEeeeh
Confidence 46667899999999999 99999999987632 234455789999999999888888887 5999999877
Q ss_pred CCCcC-------ceeeecC-----CCceEEEEEcCCCC-EEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEcc
Q psy8285 280 THSDY-------PTAITRE-----GDVVCGLKWSPNGR-YLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCP 346 (507)
Q Consensus 280 ~~~~~-------~~~~~~~-----~~~v~~~~~~~~~~-~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~ 346 (507)
...+. ......+ --.|+++...|..+ .+.+|+|+.++-||++++ +....+++|...+.++.--.
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G---~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG---RIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC---EEEEEEcCCcceeeeeeecc
Confidence 54320 0011112 23578888888655 455556899999999999 88899999999999999854
Q ss_pred CCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-----------CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc
Q psy8285 347 WEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-----------SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 347 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----------~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~ 415 (507)
...+++. |++ ||++|+||.++++++..+... ..|.+++- +..++++ |. .-.+.+|++++.+
T Consensus 167 ~~~qils-G~E--DGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvC--Gg-Gp~lslwhLrsse 238 (325)
T KOG0649|consen 167 ANGQILS-GAE--DGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVC--GG-GPKLSLWHLRSSE 238 (325)
T ss_pred cCcceee-cCC--CccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEe--cC-CCceeEEeccCCC
Confidence 4446665 443 999999999999998877532 12444443 5667887 43 4579999999998
Q ss_pred EEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 416 LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 416 ~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
+...+. -..++..+.|.. .++++++....|.-|.+..
T Consensus 239 ~t~vfp-ipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 239 STCVFP-IPARVHLVDFVD--DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred ceEEEe-cccceeEeeeec--ceEEEeccccceeeeeecc
Confidence 888776 356788888854 4677888788899998764
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-15 Score=140.70 Aligned_cols=231 Identities=15% Similarity=0.180 Sum_probs=154.3
Q ss_pred eEEEEeCCCCcEEEEeCCC-ce--eEEEEeecCccEEEEEe--eCCEEEEEe-cCCeEEEEECCCCCcCc-eeeecCCCc
Q psy8285 222 DLAVTNTCTEYIDLWHEQE-ER--LIQKLRTHMHQVIAMCW--NGNLLSCGT-IGGNILHYDVRTHSDYP-TAITREGDV 294 (507)
Q Consensus 222 ~l~~~~~~dg~i~iwd~~~-~~--~~~~~~~~~~~v~~~~~--~~~~l~~~~-~dg~i~i~d~~~~~~~~-~~~~~~~~~ 294 (507)
+++++...++.|.+||+.+ ++ .+..+. +......+.+ ++++|++++ .++.|.+|+++...... .........
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~ 81 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGS 81 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCC
Confidence 4455547899999999964 32 344443 2344555666 688876664 57889999997322111 111122335
Q ss_pred eEEEEEcCCCCEEEEEe--CCcEEEEEcCCCC-CCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC
Q psy8285 295 VCGLKWSPNGRYLASGS--NNTVKIWDFRQLD-AKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG 371 (507)
Q Consensus 295 v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 371 (507)
...++|+|+++++++++ ++.|.+|+++... ......... +......++++|+++.++++..+ ++.|.+||+.+.
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~--~~~v~v~d~~~~ 158 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLK--EDRIRLFTLSDD 158 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCC--CCEEEEEEECCC
Confidence 67899999999999887 4999999997431 112222222 33456788999999888887765 899999999764
Q ss_pred Ceee-------eeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC--c--cEEEEeecc------ccceeEEEECC
Q psy8285 372 KEKC-------HVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR--L--HLIEELKIH------QERILSAVLSP 434 (507)
Q Consensus 372 ~~~~-------~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~--~--~~~~~~~~~------~~~i~~~~~s~ 434 (507)
..+. ..........+.|+|+|++++++ ...++.|.+|++.. + +.+..+..+ ......+.++|
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~-~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p 237 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCV-NELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP 237 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEE-ecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence 3221 12223456789999999999885 34489999999973 2 333333321 11233688999
Q ss_pred CCCEEEEEeC-CCcEEEEecCCCC
Q psy8285 435 DQTCVAAASA-DETISIWNCFPRD 457 (507)
Q Consensus 435 ~~~~l~s~~~-dg~i~iw~~~~~~ 457 (507)
++++|+++.. ++.|.+|++.+..
T Consensus 238 dg~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 238 DGRHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred CCCEEEEecCCCCeEEEEEEeCCC
Confidence 9999988854 7899999997654
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-17 Score=133.51 Aligned_cols=222 Identities=13% Similarity=0.183 Sum_probs=146.0
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccC-----CC---eEEEEeCCCC--cEEEEeCCCceeEEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR-----TT---DLAVTNTCTE--YIDLWHEQEERLIQKL 247 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~---~l~~~~~~dg--~i~iwd~~~~~~~~~~ 247 (507)
+.+-+.|..+.+|++..+.......+ .+.++-|.+. ++ .++.. -..| .+.+-|......+...
T Consensus 70 l~tqgRd~~L~lw~ia~s~~i~i~Si------~~nslgFCrfSl~~~~k~~eqll~y-p~rgsde~h~~D~g~~tqv~i~ 142 (323)
T KOG0322|consen 70 LDTQGRDPLLILWTIAYSAFISIHSI------VVNSLGFCRFSLVKKPKNSEQLLEY-PSRGSDETHKQDGGDTTQVQIA 142 (323)
T ss_pred hhhcCCCceEEEEEccCcceEEEeee------eccccccccceeccCCCcchhheec-CCcccchhhhhccCccceeEcc
Confidence 55567888888888877665554333 3344444331 11 12211 1111 1222222211111111
Q ss_pred ----eecCccEEEEEe---e--CCEEEEEecCCeEEEEECCCCCc---------CceeeecCCCceEEEEEcCCCCEEEE
Q psy8285 248 ----RTHMHQVIAMCW---N--GNLLSCGTIGGNILHYDVRTHSD---------YPTAITREGDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 248 ----~~~~~~v~~~~~---~--~~~l~~~~~dg~i~i~d~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~ 309 (507)
.+..+.+.+..+ . .-++++|.++|.+.+||+.++.. .......|..+|.++.|.+.-..=++
T Consensus 143 dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGis 222 (323)
T KOG0322|consen 143 DDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGIS 222 (323)
T ss_pred CchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcC
Confidence 124456777776 2 23677888999999999998631 23344568899999999876555555
Q ss_pred Ee-CCcEEEEEcCCCC-CCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEE
Q psy8285 310 GS-NNTVKIWDFRQLD-AKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSI 386 (507)
Q Consensus 310 ~~-d~~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~ 386 (507)
|+ +..+..|.++... ..+.-....-....|..+..-||+ +++++++ .|+.||+|+-++..++..++.| ..+.++
T Consensus 223 gga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~-KIlATAG--WD~RiRVyswrtl~pLAVLkyHsagvn~v 299 (323)
T KOG0322|consen 223 GGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDG-KILATAG--WDHRIRVYSWRTLNPLAVLKYHSAGVNAV 299 (323)
T ss_pred CCccccceeeeeccccCcccccceEEecCCCccceEEccCC-cEEeecc--cCCcEEEEEeccCCchhhhhhhhcceeEE
Confidence 55 5778888876531 111222222244568889999998 6778777 4999999999999999999887 789999
Q ss_pred EECCCCCeEEEEeccCCCeEEEEeC
Q psy8285 387 LWSEQYRELVTSHGKQDCSLKMWEY 411 (507)
Q Consensus 387 ~~s~~~~~l~~~~g~~d~~i~v~d~ 411 (507)
+|+|+...+|+ ++.|+.|.+|++
T Consensus 300 Afspd~~lmAa--askD~rISLWkL 322 (323)
T KOG0322|consen 300 AFSPDCELMAA--ASKDARISLWKL 322 (323)
T ss_pred EeCCCCchhhh--ccCCceEEeeec
Confidence 99999999999 899999999986
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=149.84 Aligned_cols=249 Identities=14% Similarity=0.194 Sum_probs=180.6
Q ss_pred cceeeeeeCCCC--EEEEEcCCeEEEEECCC------CceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEe
Q psy8285 166 FYTSGLDWGYHD--TLAVALDTSVYTWNTKT------NKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWH 237 (507)
Q Consensus 166 ~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd 237 (507)
-+|+.+++.+.. +++++.++.|.+|+++. ....++.++.+ |.++|.|++..+++..++++ +.||+|+.|+
T Consensus 295 d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfra-H~gPVl~v~v~~n~~~~ysg-g~Dg~I~~w~ 372 (577)
T KOG0642|consen 295 DCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRA-HEGPVLCVVVPSNGEHCYSG-GIDGTIRCWN 372 (577)
T ss_pred hhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEec-ccCceEEEEecCCceEEEee-ccCceeeeec
Confidence 346777887754 88899999999999932 34567888888 99999999999999999999 9999999996
Q ss_pred CCCc----------eeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC
Q psy8285 238 EQEE----------RLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR 305 (507)
Q Consensus 238 ~~~~----------~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 305 (507)
+... .....+.+|...++.+++ ....|++++.||+++.|+......+........+.-.++.+-....
T Consensus 373 ~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~ 452 (577)
T KOG0642|consen 373 LPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRP 452 (577)
T ss_pred cCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchh
Confidence 6421 234567899999999999 4677999999999999998876531111111222334455543321
Q ss_pred EEEEEe-C-CcEEEEEcCCCCCCCCeeeecC-------CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeee
Q psy8285 306 YLASGS-N-NTVKIWDFRQLDAKRPQVNNQC-------HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH 376 (507)
Q Consensus 306 ~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 376 (507)
.+..++ . +.-.++++... ..+..+.. ....+..+.++|.....+. +.. |+.|+++|..+++++..
T Consensus 453 a~~~~s~~~~~~~~~~~ev~---s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~-~he--d~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 453 AHSLASFRFGYTSIDDMEVV---SDLLIFESSASPGPRRYPQINKVVSHPTADITFT-AHE--DRSIRFFDNKTGKILHS 526 (577)
T ss_pred Hhhhhhcccccccchhhhhh---hheeeccccCCCcccccCccceEEecCCCCeeEe-ccc--CCceecccccccccchh
Confidence 222222 2 44344444433 22322221 1235677888888854554 433 99999999999999988
Q ss_pred eecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccc
Q psy8285 377 VKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQ 424 (507)
Q Consensus 377 ~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~ 424 (507)
...+ ..++++++.|+|.+|++ |+.|+.+++|.+....++.....|.
T Consensus 527 ~~a~~~svtslai~~ng~~l~s--~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPNGPYLMS--GSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eeeccceecceeecCCCceEEe--ecCCceeehhhccchheeecccccc
Confidence 7776 78999999999999999 8999999999998877777666554
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-16 Score=153.38 Aligned_cols=281 Identities=15% Similarity=0.211 Sum_probs=196.3
Q ss_pred eeeeCCCC-EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccC--CCeEEEEeCCCCcEEEEeCCC-----
Q psy8285 170 GLDWGYHD-TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR--TTDLAVTNTCTEYIDLWHEQE----- 240 (507)
Q Consensus 170 ~~~~s~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~dg~i~iwd~~~----- 240 (507)
.+.++|=. .++++ ....|++||.+.++...-+.........|+.+.+-.+ ...++++ +.||.|+||+--.
T Consensus 1069 ~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLta-s~dGvIRIwk~y~~~~~~ 1147 (1387)
T KOG1517|consen 1069 TLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTA-SSDGVIRIWKDYADKWKK 1147 (1387)
T ss_pred eeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeee-ccCceEEEecccccccCC
Confidence 35666633 44444 4678999999998876655543335677999998653 3567777 9999999997432
Q ss_pred ceeEEEEee-------cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC-CCCEEEEE
Q psy8285 241 ERLIQKLRT-------HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP-NGRYLASG 310 (507)
Q Consensus 241 ~~~~~~~~~-------~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 310 (507)
.+.+....+ ..+.-.-+.| ...+|++++.-..|+|||............+....++++.-+. .|+.+++|
T Consensus 1148 ~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AG 1227 (1387)
T KOG1517|consen 1148 PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAG 1227 (1387)
T ss_pred ceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEe
Confidence 233332221 1111134566 3344555555789999999876533333344455666665443 46888888
Q ss_pred e-CCcEEEEEcCCCCCCCCeeeecCCCCC--eeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeee--eec----CC
Q psy8285 311 S-NNTVKIWDFRQLDAKRPQVNNQCHLSA--VKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH--VKT----DS 381 (507)
Q Consensus 311 ~-d~~i~i~d~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~--~~~----~~ 381 (507)
. ||.|++||.+.......+...+.|... |..+.+.+.|-.-+++++. +|.|++||++....... +.. .+
T Consensus 1228 faDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~--~G~I~~~DlR~~~~e~~~~iv~~~~yGs 1305 (1387)
T KOG1517|consen 1228 FADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ--DGDIQLLDLRMSSKETFLTIVAHWEYGS 1305 (1387)
T ss_pred ecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc--CCeEEEEecccCcccccceeeeccccCc
Confidence 8 799999999987555677778888887 9999999977654666654 99999999998532221 222 23
Q ss_pred CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc-------ccceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH-------QERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~-------~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
..+++..++....+|+ |+. +.|+||++. |+.+..++.+ .+.+.+++|+|-.-.+|+|+.|.+|.||...
T Consensus 1306 ~lTal~VH~hapiiAs--Gs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1306 ALTALTVHEHAPIIAS--GSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred cceeeeeccCCCeeee--cCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 5899999999999999 766 899999975 4444444322 3457999999999999999999999999987
Q ss_pred CCC
Q psy8285 455 PRD 457 (507)
Q Consensus 455 ~~~ 457 (507)
+..
T Consensus 1382 k~~ 1384 (1387)
T KOG1517|consen 1382 KPR 1384 (1387)
T ss_pred CcC
Confidence 654
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-18 Score=160.83 Aligned_cols=251 Identities=15% Similarity=0.253 Sum_probs=192.7
Q ss_pred ecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECC
Q psy8285 202 EYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVR 279 (507)
Q Consensus 202 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~ 279 (507)
.+.| |...|.|+.|...|.+++++ +.|..++||.+.++.++....+|.+.++.++. ++.++++++.|..|++|.+.
T Consensus 185 rLlg-H~naVyca~fDrtg~~Iitg-sdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 185 RLLG-HRNAVYCAIFDRTGRYIITG-SDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHh-hhhheeeeeeccccceEeec-CccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 3445 89999999999999999999 99999999999999999999999999999998 57789999999999999999
Q ss_pred CCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCC-C--CCCCee--------ee----------------
Q psy8285 280 THSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQL-D--AKRPQV--------NN---------------- 332 (507)
Q Consensus 280 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~-~--~~~~~~--------~~---------------- 332 (507)
.+. +...+.+|.+.|++++|+|-. .++.||++++||.+-. . .+.+.. .+
T Consensus 263 ~~~-pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 263 DGA-PVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred CCc-hHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 876 788899999999999999965 3333699999998821 0 000000 00
Q ss_pred cCCCCCeeEEEEcc----------CCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEecc
Q psy8285 333 QCHLSAVKAIAWCP----------WEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGK 401 (507)
Q Consensus 333 ~~~~~~v~~~~~~~----------~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~ 401 (507)
........+++|.. +-..+.+++. .+-.+.+|++.+|...+.+.++ ..+..+.++|-+..++.. .+
T Consensus 339 ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar--~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms-ag 415 (1113)
T KOG0644|consen 339 EARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTAR--NDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS-AG 415 (1113)
T ss_pred ccccchhhHhhhhccceEEEeccccccccceeee--eeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh-cc
Confidence 00000111222221 1112222222 2567889999999988888877 678999999998888776 67
Q ss_pred CCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccc
Q psy8285 402 QDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRK 461 (507)
Q Consensus 402 ~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 461 (507)
.||...|||+-.+.+++.+....+.+..-+||+||+.++....-|.++|.....++....
T Consensus 416 ~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ 475 (1113)
T KOG0644|consen 416 YDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKK 475 (1113)
T ss_pred CCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccccc
Confidence 899999999999988776654456677889999999999888889999998876554443
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=135.05 Aligned_cols=194 Identities=16% Similarity=0.278 Sum_probs=154.3
Q ss_pred CeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe----eCCEEEEEecCCeEEEEECCCCCcCce-eeecCC-Cc
Q psy8285 221 TDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW----NGNLLSCGTIGGNILHYDVRTHSDYPT-AITREG-DV 294 (507)
Q Consensus 221 ~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~-~~ 294 (507)
..+|++ ...|.|++||..+++.+..++++...+..+.| .+..+.+++.||+|++||++...+... ....+. .+
T Consensus 41 ~~vav~-lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVS-LSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEE-ecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 467777 89999999999999999999999999999999 367899999999999999998764333 333343 46
Q ss_pred eEEEEEcCCCCEEEEEe-----CCcEEEEEcCCCCCCCCee-eecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeC
Q psy8285 295 VCGLKWSPNGRYLASGS-----NNTVKIWDFRQLDAKRPQV-NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNS 368 (507)
Q Consensus 295 v~~~~~~~~~~~l~~~~-----d~~i~i~d~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~ 368 (507)
..|++.+-.++.+++|. +-.|.+||+|..+ +++. -...|...|+++.|+|..+.++++|+. ||.|.+||+
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q--q~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSv--DGLvnlfD~ 195 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ--QLLRQLNESHNDDVTQLRFHPSDPNLLLSGSV--DGLVNLFDT 195 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEecccc--chhhhhhhhccCcceeEEecCCCCCeEEeecc--cceEEeeec
Confidence 77788777888888886 3679999999862 2133 345699999999999999999999986 999999999
Q ss_pred CCCC----eeeeeecCCCeEEEEECCCC-CeEEEEeccCCCeEEEEeCCCccEEEEee
Q psy8285 369 MNGK----EKCHVKTDSQVTSILWSEQY-RELVTSHGKQDCSLKMWEYPRLHLIEELK 421 (507)
Q Consensus 369 ~~~~----~~~~~~~~~~i~~~~~s~~~-~~l~~~~g~~d~~i~v~d~~~~~~~~~~~ 421 (507)
.... .+..+...+.|.++.|..++ +.|.+ -+......+|++..+.+...+.
T Consensus 196 ~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~c--lTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 196 KKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMC--LTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred CCCcchhhHHHhhcccceeeeeeeecCCcceEEE--EEccCceeEEEccCCChhhccc
Confidence 7653 34556666789999999887 34555 4578899999999887655443
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-15 Score=124.70 Aligned_cols=276 Identities=17% Similarity=0.226 Sum_probs=189.8
Q ss_pred eeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC------CcEEEEeCCCce
Q psy8285 170 GLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT------EYIDLWHEQEER 242 (507)
Q Consensus 170 ~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d------g~i~iwd~~~~~ 242 (507)
.++|+.|. -++++.+...++|+.+.-+.....+... ..-.+..|-|- .++|+..|+.+ ..|.|||-...+
T Consensus 10 svs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~-~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 10 SVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFID-GGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred EEEEccCCceEEEEecCceEEEecCchhhhhhhcccc-CchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecccCc
Confidence 48898887 8888899999999987644322222221 12333344443 45666553333 479999966666
Q ss_pred eEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeee--cCCCceEEEEEcCCCCEEEEEe-C-CcEEEE
Q psy8285 243 LIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAIT--REGDVVCGLKWSPNGRYLASGS-N-NTVKIW 318 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~ 318 (507)
++.++. ...+|.++.+..+.|++.- .+.|+||...+.-.....+. .....+++++-+.+..+||.=+ . |.|+|-
T Consensus 87 ~i~el~-f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~ 164 (346)
T KOG2111|consen 87 CIIELS-FNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIV 164 (346)
T ss_pred EEEEEE-eccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEE
Confidence 666665 6788999999988888887 57899999985433333332 2234465555555556677656 4 999999
Q ss_pred EcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCe-EEEEeCCCCCeeeeeecC---CCeEEEEECCCCCe
Q psy8285 319 DFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQT-VRLWNSMNGKEKCHVKTD---SQVTSILWSEQYRE 394 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~~~~~~~~~~~---~~i~~~~~s~~~~~ 394 (507)
|+...... ....+.+|...|.|++.+-+| .++++++. .|+ |||||..+|+.+..+... ..|.+++|||+..+
T Consensus 165 dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~G-t~vATaSt--kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~ 240 (346)
T KOG2111|consen 165 DLASTKPN-APSIINAHDSDIACVALNLQG-TLVATAST--KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW 240 (346)
T ss_pred EhhhcCcC-CceEEEcccCceeEEEEcCCc-cEEEEecc--CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE
Confidence 99875221 346778899999999999999 67777764 665 899999999999998765 57999999999999
Q ss_pred EEEEeccCCCeEEEEeCCCccEEE------------------------EeeccccceeEEEECCCCCEEEEEeCCCcEEE
Q psy8285 395 LVTSHGKQDCSLKMWEYPRLHLIE------------------------ELKIHQERILSAVLSPDQTCVAAASADETISI 450 (507)
Q Consensus 395 l~~~~g~~d~~i~v~d~~~~~~~~------------------------~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~i 450 (507)
|++ .++.|+++||.++....-. .+.-..+...-++|-.+.+.++..+.||.-+-
T Consensus 241 Lav--sSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k 318 (346)
T KOG2111|consen 241 LAV--SSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYK 318 (346)
T ss_pred EEE--EcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEE
Confidence 999 7899999999886422110 11112233444666666566666677777665
Q ss_pred EecCCC
Q psy8285 451 WNCFPR 456 (507)
Q Consensus 451 w~~~~~ 456 (507)
+.+.+.
T Consensus 319 ~~f~~~ 324 (346)
T KOG2111|consen 319 FKFDPK 324 (346)
T ss_pred EEeccc
Confidence 555443
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-16 Score=149.16 Aligned_cols=239 Identities=17% Similarity=0.257 Sum_probs=178.3
Q ss_pred ceeeeeeCCCC--EEE-EEcCCeEEEEECCCCcee---EEEecCCCCCCceEEEEEccCCCe--EEEEeCCCCcEEEEeC
Q psy8285 167 YTSGLDWGYHD--TLA-VALDTSVYTWNTKTNKTQ---LLVEYPTYDNAYISCVAWKPRTTD--LAVTNTCTEYIDLWHE 238 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~-~~~~~~i~iw~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~~dg~i~iwd~ 238 (507)
.|.++.++|.. +++ ++.+|+|.+||+..+... .+......|..+++.+.|..+-.. ++++ +.||.|..|++
T Consensus 244 ~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~-ssDG~i~~W~~ 322 (555)
T KOG1587|consen 244 EVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSL-SSDGSICSWDT 322 (555)
T ss_pred ceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEE-ecCCcEeeeec
Confidence 47889998854 444 559999999999886652 111122228999999999876544 8888 88999999987
Q ss_pred CCceeEE------EEe------ecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCC-------cCceeeecCCCceE
Q psy8285 239 QEERLIQ------KLR------THMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHS-------DYPTAITREGDVVC 296 (507)
Q Consensus 239 ~~~~~~~------~~~------~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~-------~~~~~~~~~~~~v~ 296 (507)
+...... ... .....+++++| +...++.|+.+|.|.--+....+ ........|.+.|+
T Consensus 323 ~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~ 402 (555)
T KOG1587|consen 323 DMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVY 402 (555)
T ss_pred cccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceE
Confidence 6432211 111 12345788888 78899999999998873333222 12334566889999
Q ss_pred EEEEcCCCC-EEEEEeCCcEEEEEcC-CCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC--C
Q psy8285 297 GLKWSPNGR-YLASGSNNTVKIWDFR-QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG--K 372 (507)
Q Consensus 297 ~~~~~~~~~-~l~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--~ 372 (507)
++.++|=+. ++++++|.+++||... .. .++..+..+...+++++|||-...+++++.+ ||.+.+||+... .
T Consensus 403 ~v~~nPF~~k~fls~gDW~vriWs~~~~~---~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~--~G~l~iWDLl~~~~~ 477 (555)
T KOG1587|consen 403 AVSRNPFYPKNFLSVGDWTVRIWSEDVIA---SPLLSLDSSPDYVTDVAWSPTRPAVFATVDG--DGNLDIWDLLQDDEE 477 (555)
T ss_pred eeecCCCccceeeeeccceeEeccccCCC---CcchhhhhccceeeeeEEcCcCceEEEEEcC--CCceehhhhhccccC
Confidence 999999654 5666669999999887 44 7788888888889999999999899999886 999999999654 3
Q ss_pred eeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 373 EKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 373 ~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
++...... ...+.+.|+++|+.|++ |...|.+++|++..
T Consensus 478 Pv~s~~~~~~~l~~~~~s~~g~~lav--Gd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 478 PVLSQKVCSPALTRVRWSPNGKLLAV--GDANGTTHILKLSE 517 (555)
T ss_pred CcccccccccccceeecCCCCcEEEE--ecCCCcEEEEEcCc
Confidence 44444333 45678889999999999 99999999999853
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=138.60 Aligned_cols=286 Identities=14% Similarity=0.165 Sum_probs=204.3
Q ss_pred eeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee
Q psy8285 171 LDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT 249 (507)
Q Consensus 171 ~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~ 249 (507)
..+||++ .+|...+-.+.|-|..+-+..+++.. -+.|.-+.|..+..+++.+...++.|.+|++...+-...+..
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c----ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC----LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH----HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 5688988 77877788999999988877666553 456889999999988888878999999999999888888988
Q ss_pred cCccEEEEEe--eC-CEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--C--CcEEEEEcCC
Q psy8285 250 HMHQVIAMCW--NG-NLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--N--NTVKIWDFRQ 322 (507)
Q Consensus 250 ~~~~v~~~~~--~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d--~~i~i~d~~~ 322 (507)
...++..++| || ..|.+...+-.|.+|.+.+.. ...+...+..+..++|+|||++.+..+ | ..+.|.....
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--GYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccce--eEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence 9999999999 67 456667778899999999865 334444455678899999999988887 3 2222221111
Q ss_pred CCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccC
Q psy8285 323 LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQ 402 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~ 402 (507)
...+..+....-..+.+.|+|||..+++-.. -.+..|.. ....-.+..++|+|.+++|++ |+.
T Consensus 168 ---W~ll~~f~~dT~DltgieWsPdg~~laVwd~-~Leykv~a-----------Ye~~lG~k~v~wsP~~qflav--Gsy 230 (447)
T KOG4497|consen 168 ---WILLKEFKLDTIDLTGIEWSPDGNWLAVWDN-VLEYKVYA-----------YERGLGLKFVEWSPCNQFLAV--GSY 230 (447)
T ss_pred ---HHHHHhcCCCcccccCceECCCCcEEEEecc-hhhheeee-----------eeeccceeEEEeccccceEEe--ecc
Confidence 1233444445556789999999855444221 12233332 223346888999999999999 999
Q ss_pred CCeEEEEeCCCccE------------------------------------------------------------EEEee-
Q psy8285 403 DCSLKMWEYPRLHL------------------------------------------------------------IEELK- 421 (507)
Q Consensus 403 d~~i~v~d~~~~~~------------------------------------------------------------~~~~~- 421 (507)
|+.++|.+--+.++ +..++
T Consensus 231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp 310 (447)
T KOG4497|consen 231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP 310 (447)
T ss_pred chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence 99998865321111 00111
Q ss_pred -----ccccceeEEEECCCCCEEEEEeCC--CcEEEEecCCCCcccceeecCCCcceEEeeccCc
Q psy8285 422 -----IHQERILSAVLSPDQTCVAAASAD--ETISIWNCFPRDKKRKARQVGSGSSLEFAILKQP 479 (507)
Q Consensus 422 -----~~~~~i~~~~~s~~~~~l~s~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (507)
.....+.-++|++|..+++|-.+. ..+-+||++..+.-..+.+..++...+|.|....
T Consensus 311 ~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~pr 375 (447)
T KOG4497|consen 311 PTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPR 375 (447)
T ss_pred CCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCce
Confidence 112235668999999999886543 6799999999888777777777777777665443
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-15 Score=145.81 Aligned_cols=235 Identities=11% Similarity=0.070 Sum_probs=161.2
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC--CCCcEEEEeCCCceeEEEEeecCccEEEEEe--e
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT--CTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--N 260 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~ 260 (507)
..|+++|....+...+.. +...+...+|+|||+.|+.... .+..+.+|++.+++.... ......+..+.| |
T Consensus 179 ~~l~~~d~dg~~~~~lt~----~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPD 253 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHR----SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPD 253 (429)
T ss_pred eeEEEEcCCCCCCEEeec----CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCC
Confidence 379999987666554443 5668999999999999987622 245799999988754332 222233345667 7
Q ss_pred CCEEEEE-ecCC--eEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC--CcEEEE--EcCCCCCCCCeeeec
Q psy8285 261 GNLLSCG-TIGG--NILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN--NTVKIW--DFRQLDAKRPQVNNQ 333 (507)
Q Consensus 261 ~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--~~i~i~--d~~~~~~~~~~~~~~ 333 (507)
|+.|+.. +.+| .|++||+.++. ...+..+...+....|+|||+.|+..++ +...+| |+..+ ....+.
T Consensus 254 G~~La~~~~~~g~~~I~~~d~~tg~--~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g----~~~~lt 327 (429)
T PRK03629 254 GSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG----APQRIT 327 (429)
T ss_pred CCEEEEEEcCCCCcEEEEEECCCCC--EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC----CeEEee
Confidence 8887765 4444 58899998765 3444445556788999999999888774 444555 55544 223333
Q ss_pred CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCC---eEEEEe
Q psy8285 334 CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDC---SLKMWE 410 (507)
Q Consensus 334 ~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~---~i~v~d 410 (507)
..........|+|+|+.+++++.......|.+||+.+++... +..........|+|||+.|+.+ +.++ .+.+++
T Consensus 328 ~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~~~~p~~SpDG~~i~~~--s~~~~~~~l~~~~ 404 (429)
T PRK03629 328 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTFLDETPSIAPNGTMVIYS--SSQGMGSVLNLVS 404 (429)
T ss_pred cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCCCCCCceECCCCCEEEEE--EcCCCceEEEEEE
Confidence 344456679999999888776653223578999998886443 3333334568899999999985 3444 377778
Q ss_pred CCCccEEEEeeccccceeEEEECC
Q psy8285 411 YPRLHLIEELKIHQERILSAVLSP 434 (507)
Q Consensus 411 ~~~~~~~~~~~~~~~~i~~~~~s~ 434 (507)
+ +++....+.+|.+.+...+|+|
T Consensus 405 ~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 405 T-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred C-CCCCeEECccCCCCcCCcccCC
Confidence 7 4556677778888899999987
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.7e-16 Score=131.06 Aligned_cols=270 Identities=18% Similarity=0.243 Sum_probs=180.9
Q ss_pred CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee-cCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCc
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT-HMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSD 283 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~ 283 (507)
+..+..++|++.-..++++ ..|..|++||-.. ++...++. ....|++++| .+..|+.|+.. -|.+|.......
T Consensus 98 ~~dlr~~aWhqH~~~fava-~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVA-TNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred hcceeeEeechhhhhhhhh-ccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccc
Confidence 4567889999977777888 8999999999776 54445543 5678999999 57788888865 588998754221
Q ss_pred C-------------ceeeecCCCceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCC
Q psy8285 284 Y-------------PTAITREGDVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWE 348 (507)
Q Consensus 284 ~-------------~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 348 (507)
. ...-.+| .+|+++.|.+||..+++++ +..|.|||..++ ..+.......+.+.-+.||||+
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg---~~~pL~~~glgg~slLkwSPdg 250 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG---QKIPLIPKGLGGFSLLKWSPDG 250 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC---CcccccccCCCceeeEEEcCCC
Confidence 1 1111223 6899999999999999998 499999999987 3332223456788999999999
Q ss_pred CcEEEEEccCCCCeEEEEe-CCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc-------------
Q psy8285 349 PTLLATGGGICDQTVRLWN-SMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL------------- 414 (507)
Q Consensus 349 ~~~~~~~~~~~d~~i~i~d-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~------------- 414 (507)
..++++.- |+..++|. .++.....-.-..+.+...+|+|+|++|+.++ .|.-++|.+.-.
T Consensus 251 d~lfaAt~---davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~---sgsp~lysl~f~~~~~~~~~~~~~k 324 (445)
T KOG2139|consen 251 DVLFAATC---DAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC---SGSPRLYSLTFDGEDSVFLRPQSIK 324 (445)
T ss_pred CEEEEecc---cceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE---cCCceEEEEeecCCCccccCcccce
Confidence 98888776 99999995 44444555555557899999999999998853 333444443210
Q ss_pred --cEEEEee-----cc----ccceeEEEECCCCCEEEEEeCCC--------cEEEEecCCCCccccee----ecCCCcce
Q psy8285 415 --HLIEELK-----IH----QERILSAVLSPDQTCVAAASADE--------TISIWNCFPRDKKRKAR----QVGSGSSL 471 (507)
Q Consensus 415 --~~~~~~~-----~~----~~~i~~~~~s~~~~~l~s~~~dg--------~i~iw~~~~~~~~~~~~----~~~~~~~~ 471 (507)
.++..+. .. .+++.+++|.|.|.+|++.-..+ .|.+||........... ......-+
T Consensus 325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~I 404 (445)
T KOG2139|consen 325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYI 404 (445)
T ss_pred eeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceE
Confidence 0111111 11 35688999999999999865433 36667766543333221 11112333
Q ss_pred EEeeccCccccceeeeecccccc
Q psy8285 472 EFAILKQPVSLTALLRSRAVEKQ 494 (507)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~ 494 (507)
.|.+.. ..+.+..++|.-.
T Consensus 405 sF~pl~----n~g~lLsiaWsTG 423 (445)
T KOG2139|consen 405 SFGPLK----NEGRLLSIAWSTG 423 (445)
T ss_pred Eeeecc----cCCcEEEEEeccC
Confidence 444422 4456666676543
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.1e-15 Score=122.89 Aligned_cols=240 Identities=13% Similarity=0.163 Sum_probs=167.0
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecC--ccEEEEEeeCCEEEEE-ecC------CeEEEEECC
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHM--HQVIAMCWNGNLLSCG-TIG------GNILHYDVR 279 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~l~~~-~~d------g~i~i~d~~ 279 (507)
....+++|+.|...++++ .|.-.+||+.+..+.....+.+. -.+..+-|..++|+.. +.+ ..+.|||-.
T Consensus 6 ~~~lsvs~NQD~ScFava--~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVA--TDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred CceeEEEEccCCceEEEE--ecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc
Confidence 445679999999998888 55568999987644432222222 2333444445555443 322 369999943
Q ss_pred CCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCC-CcEEEEEccC
Q psy8285 280 THSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWE-PTLLATGGGI 358 (507)
Q Consensus 280 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~ 358 (507)
... +. .-.....+|.++.+.++ .|++.-++.|++|...+. .+.+..+.....+---++..|.. ..+++.- +.
T Consensus 84 k~~-~i-~el~f~~~I~~V~l~r~--riVvvl~~~I~VytF~~n--~k~l~~~et~~NPkGlC~~~~~~~k~~LafP-g~ 156 (346)
T KOG2111|consen 84 KER-CI-IELSFNSEIKAVKLRRD--RIVVVLENKIYVYTFPDN--PKLLHVIETRSNPKGLCSLCPTSNKSLLAFP-GF 156 (346)
T ss_pred cCc-EE-EEEEeccceeeEEEcCC--eEEEEecCeEEEEEcCCC--hhheeeeecccCCCceEeecCCCCceEEEcC-CC
Confidence 322 22 23345678999999865 688888899999998743 24444444332222234444433 3455544 34
Q ss_pred CCCeEEEEeCCCCCe--eeeeecC-CCeEEEEECCCCCeEEEEeccCCCe-EEEEeCCCccEEEEeecc--ccceeEEEE
Q psy8285 359 CDQTVRLWNSMNGKE--KCHVKTD-SQVTSILWSEQYRELVTSHGKQDCS-LKMWEYPRLHLIEELKIH--QERILSAVL 432 (507)
Q Consensus 359 ~d~~i~i~d~~~~~~--~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~-i~v~d~~~~~~~~~~~~~--~~~i~~~~~ 432 (507)
.-|.|+|-|+...+. ...+..| +.|.+++.+.+|..+|+ ++..|+ |+|||..+++++.+++.. ...|.+++|
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vAT--aStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF 234 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVAT--ASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF 234 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEE--eccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence 579999999987665 2444444 89999999999999999 677775 899999999999999743 456999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 433 SPDQTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 433 s~~~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
||+..+|+++|+.|+++|+.+......
T Consensus 235 Sp~~s~LavsSdKgTlHiF~l~~~~~~ 261 (346)
T KOG2111|consen 235 SPNSSWLAVSSDKGTLHIFSLRDTENT 261 (346)
T ss_pred CCCccEEEEEcCCCeEEEEEeecCCCC
Confidence 999999999999999999999875543
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.5e-16 Score=124.30 Aligned_cols=205 Identities=13% Similarity=0.255 Sum_probs=156.7
Q ss_pred eCCEEEEEecCCeEEEEECCCC---------CcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCC---CC
Q psy8285 260 NGNLLSCGTIGGNILHYDVRTH---------SDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDA---KR 327 (507)
Q Consensus 260 ~~~~l~~~~~dg~i~i~d~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~---~~ 327 (507)
.+++|++|..+|.|.++.++.. +......++|.++++.++|. ..+|++++||.|+=|..+.... .+
T Consensus 21 ~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K 98 (325)
T KOG0649|consen 21 SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATK 98 (325)
T ss_pred cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccch
Confidence 5789999999999999988642 22344557899999999998 4689999999999998765421 01
Q ss_pred C-------eeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEe
Q psy8285 328 P-------QVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSH 399 (507)
Q Consensus 328 ~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~ 399 (507)
+ .+.-...-..|+++...|..+.++.+++ |+.++.||+++|+..+.+++| ..+.++.--.....+++
T Consensus 99 ~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG---D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qils-- 173 (325)
T KOG0649|consen 99 RLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG---DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILS-- 173 (325)
T ss_pred hhhhhcCccccCcccCCccceeEeccCCCcEEEecC---CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceee--
Confidence 1 1111112246889999999888888886 999999999999999999999 56888887666677888
Q ss_pred ccCCCeEEEEeCCCccEEEEeeccc----------cceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecCCCc
Q psy8285 400 GKQDCSLKMWEYPRLHLIEELKIHQ----------ERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGS 469 (507)
Q Consensus 400 g~~d~~i~v~d~~~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 469 (507)
|++||++++||.++++.+..+.... ..|-+++- +..+|++|+ ...+.+|++...+....++...++.
T Consensus 174 G~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~ 250 (325)
T KOG0649|consen 174 GAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVH 250 (325)
T ss_pred cCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEeccccee
Confidence 9999999999999999888775321 23555554 445777665 4579999999999988887777766
Q ss_pred ceEEe
Q psy8285 470 SLEFA 474 (507)
Q Consensus 470 ~~~~~ 474 (507)
.+.|.
T Consensus 251 ~v~F~ 255 (325)
T KOG0649|consen 251 LVDFV 255 (325)
T ss_pred Eeeee
Confidence 66554
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-16 Score=147.99 Aligned_cols=230 Identities=12% Similarity=0.085 Sum_probs=154.7
Q ss_pred CCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecC---CeEEEEECCCCCcCceeeecCCCceEEEEEcCCC
Q psy8285 230 TEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIG---GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNG 304 (507)
Q Consensus 230 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 304 (507)
+..|.+||..... .+.+..+...+....| |++.|+..+.+ ..|++||+.+++. ..+.........++|+|||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~--~~l~~~~g~~~~~~wSPDG 259 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR--KVVASFRGHNGAPAFSPDG 259 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce--EEEecCCCccCceeECCCC
Confidence 4689999986544 5566677888999999 78888887654 3699999987642 2222233334568999999
Q ss_pred CEEEEEe--CCcEEEE--EcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC-Ceeeeeec
Q psy8285 305 RYLASGS--NNTVKIW--DFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG-KEKCHVKT 379 (507)
Q Consensus 305 ~~l~~~~--d~~i~i~--d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~ 379 (507)
+.|+.+. ++.+.|| |+..+ ....+..+...+..+.|+|||+.+++++.. ++..++|++... .....+.
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~----~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~--~g~~~I~~~~~~~~~~~~l~- 332 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGG----TPSQLTSGAGNNTEPSWSPDGQSILFTSDR--SGSPQVYRMSASGGGASLVG- 332 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCC----CeEeeccCCCCcCCEEECCCCCEEEEEECC--CCCceEEEEECCCCCeEEec-
Confidence 9988765 4665555 55543 345555566778899999999888777654 677777775432 2222332
Q ss_pred CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecC--CCC
Q psy8285 380 DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF--PRD 457 (507)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~--~~~ 457 (507)
+.. ....|+|+|++|++. +.+ .+.+||+.+++.......+ ....+.|+|||++|+.++.++.+.+|.+. ++.
T Consensus 333 ~~~-~~~~~SpDG~~ia~~--~~~-~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~ 406 (429)
T PRK01742 333 GRG-YSAQISADGKTLVMI--NGD-NVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGR 406 (429)
T ss_pred CCC-CCccCCCCCCEEEEE--cCC-CEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 222 467899999999884 344 4667999888654332222 34568899999999999999999988874 344
Q ss_pred ccccee-ecCCCcceEEee
Q psy8285 458 KKRKAR-QVGSGSSLEFAI 475 (507)
Q Consensus 458 ~~~~~~-~~~~~~~~~~~~ 475 (507)
....+. ..+....+.|+|
T Consensus 407 ~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 407 FKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred ceEEccCCCCCCCCcccCC
Confidence 444333 223344455554
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.4e-17 Score=142.06 Aligned_cols=294 Identities=14% Similarity=0.159 Sum_probs=205.0
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee--cCcccceeeccccccccccCCccCCceeEee
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK--TDSQVTSILWSEQYRESSRSKMVNTDRYVVD 79 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~--~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 79 (507)
|.+|.+.|..|.|...|.. |+||+ .|..|.+|||.+++....+. |...|....
T Consensus 138 L~~H~GcVntV~FN~~Gd~-l~SgS--DD~~vv~WdW~~~~~~l~f~SGH~~NvfQaK---------------------- 192 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDV-LASGS--DDLQVVVWDWVSGSPKLSFESGHCNNVFQAK---------------------- 192 (559)
T ss_pred ccCCCCccceeeecccCce-eeccC--ccceEEeehhhccCcccccccccccchhhhh----------------------
Confidence 7899999999999999996 99999 89999999999998665443 111111111
Q ss_pred cCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcC
Q psy8285 80 RSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEA 159 (507)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (507)
+
T Consensus 193 --------------------------------------------------------------------F----------- 193 (559)
T KOG1334|consen 193 --------------------------------------------------------------------F----------- 193 (559)
T ss_pred --------------------------------------------------------------------c-----------
Confidence 1
Q ss_pred CCcccccceeeeeeCCCC-EEEEEcCCeEEEEECCC-CceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEe
Q psy8285 160 PSIINDFYTSGLDWGYHD-TLAVALDTSVYTWNTKT-NKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWH 237 (507)
Q Consensus 160 ~~~~~~~~i~~~~~s~~~-~~~~~~~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd 237 (507)
|-++.+. ++..+.||++++=.+.. +.......+.. |.++|..++.-|+..+-+.+++.|+.+.-+|
T Consensus 194 -----------iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~-h~g~vhklav~p~sp~~f~S~geD~~v~~~D 261 (559)
T KOG1334|consen 194 -----------IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAP-HEGPVHKLAVEPDSPKPFLSCGEDAVVFHID 261 (559)
T ss_pred -----------cCCCCCcCceeccccCceeeeeeccccceecceeccc-ccCccceeeecCCCCCcccccccccceeeee
Confidence 1122233 56667899988876544 33333444444 9999999999999866555448999999999
Q ss_pred CCCceeEEEEe---ecCc---cEEEEEe---eCCEEEEEecCCeEEEEECCCCCcC-----ceee------ecCCCceEE
Q psy8285 238 EQEERLIQKLR---THMH---QVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDY-----PTAI------TREGDVVCG 297 (507)
Q Consensus 238 ~~~~~~~~~~~---~~~~---~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~-----~~~~------~~~~~~v~~ 297 (507)
++.+.....+. .+.. ...+++. +...+++++.|-.+++||.+.-... ...+ ....-.|++
T Consensus 262 lr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITg 341 (559)
T KOG1334|consen 262 LRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITG 341 (559)
T ss_pred eccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCccccee
Confidence 98775443332 2333 3455665 5679999999999999998764321 1111 123456899
Q ss_pred EEEcCCC-CEEEEEeCCcEEEEEcCCCCCC---------CCee-eecCCCC--CeeEEEEccCCCcEEEEEccCCCCeEE
Q psy8285 298 LKWSPNG-RYLASGSNNTVKIWDFRQLDAK---------RPQV-NNQCHLS--AVKAIAWCPWEPTLLATGGGICDQTVR 364 (507)
Q Consensus 298 ~~~~~~~-~~l~~~~d~~i~i~d~~~~~~~---------~~~~-~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~d~~i~ 364 (507)
++|+.++ .+|++-+|-.|+++.-..+... .... .+++|.. .|..+-|---...++++|+. -|.|.
T Consensus 342 l~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSD--CGhIF 419 (559)
T KOG1334|consen 342 LVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSD--CGHIF 419 (559)
T ss_pred EEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCc--cceEE
Confidence 9999665 4555566889999954433210 1122 2566754 46677664323467777774 79999
Q ss_pred EEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc
Q psy8285 365 LWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 365 i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~ 415 (507)
||+-.+++.+..+.+. .-|+|+.-+|--..||+ .+-|..|+||--.+.+
T Consensus 420 iW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAs--SGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 420 IWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLAS--SGIDHDVKIWTPLTAE 469 (559)
T ss_pred EEecchhHHHHHhhcccceEeccCCCCCCchhhc--cCCccceeeecCCccc
Confidence 9999999999888776 57899999999999999 6789999999864443
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-15 Score=141.23 Aligned_cols=284 Identities=16% Similarity=0.194 Sum_probs=204.9
Q ss_pred eeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCC---eEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 171 LDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTT---DLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 171 ~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
-.+|+|+ .+.+..+..|.||...+++... .+++ |..+++.+.+.|... +++++ +.+|.|++||...+.++++
T Consensus 22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~--~l~~-~~a~l~s~~~~~~~~~~~~~~~~-sl~G~I~vwd~~~~~Llkt 97 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGNFVKVYSTATGECIT--SLED-HTAPLTSVIVLPSSENANYLIVC-SLDGTIRVWDWSDGELLKT 97 (792)
T ss_pred cccccCCcEEEEeeCCEEEEEecchHhhhh--hccc-ccCccceeeecCCCccceEEEEE-ecCccEEEecCCCcEEEEE
Confidence 4567777 7888889999999999998876 4445 999999999988765 45567 9999999999998887766
Q ss_pred EeecCccEEEEE-----------------------------------------------------------e-eCCEEEE
Q psy8285 247 LRTHMHQVIAMC-----------------------------------------------------------W-NGNLLSC 266 (507)
Q Consensus 247 ~~~~~~~v~~~~-----------------------------------------------------------~-~~~~l~~ 266 (507)
+..+... .++. + .+..+..
T Consensus 98 ~~~~~~v-~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~ 176 (792)
T KOG1963|consen 98 FDNNLPV-HALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKG 176 (792)
T ss_pred EecCCce-eEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEE
Confidence 5432111 0000 0 0001111
Q ss_pred EecCCeEEEEECCCCCc---CceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCC-CCCCCCeeeecCCCCCeeE
Q psy8285 267 GTIGGNILHYDVRTHSD---YPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQ-LDAKRPQVNNQCHLSAVKA 341 (507)
Q Consensus 267 ~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~-~~~~~~~~~~~~~~~~v~~ 341 (507)
...+..+.+|....... ....-..|.-.+++.+++|.++++|++. ||.|.+|.--. .........+.-|...|.+
T Consensus 177 i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~ 256 (792)
T KOG1963|consen 177 IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNS 256 (792)
T ss_pred EEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccce
Confidence 12233455566554321 0111224555689999999999999998 69999996443 2233455666679999999
Q ss_pred EEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee
Q psy8285 342 IAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK 421 (507)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~ 421 (507)
++|+++|.+++..|. ++.+.+|.+.+++....-+..++|..+.++||+.+.+. ..+|+.|.+....+.+....+.
T Consensus 257 L~fS~~G~~LlSGG~---E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl--~~~DNqI~li~~~dl~~k~tIs 331 (792)
T KOG1963|consen 257 LSFSSDGAYLLSGGR---EGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSL--VLEDNQIHLIKASDLEIKSTIS 331 (792)
T ss_pred eEEecCCceEeeccc---ceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEE--EecCceEEEEeccchhhhhhcc
Confidence 999999976666443 99999999999984444445589999999999999988 5679999999987665544443
Q ss_pred cc-----------ccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceee
Q psy8285 422 IH-----------QERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQ 464 (507)
Q Consensus 422 ~~-----------~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 464 (507)
+- .+-.+.++++|.-+.++-.+..|.|.+||+.+.+.+.+...
T Consensus 332 gi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v 385 (792)
T KOG1963|consen 332 GIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQV 385 (792)
T ss_pred CccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEE
Confidence 31 33467789999777888899999999999999888776553
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-16 Score=137.97 Aligned_cols=197 Identities=17% Similarity=0.223 Sum_probs=149.9
Q ss_pred EEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeee
Q psy8285 255 IAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNN 332 (507)
Q Consensus 255 ~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~ 332 (507)
..++| +|..+++++.||++++|+..... .......|...|.++.|+|||++|++-+....+||+.+++ ..+...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g---~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-TILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTG---AALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-hhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccC---chhhhc
Confidence 34555 88999999999999999977665 4556677889999999999999999988339999999998 444333
Q ss_pred c--CCCCCeeEEEEccCC--CcEEEEEccCCCCeEEEEeCCCCC------eeeeeecCCCeEEEEECCCCCeEEEEeccC
Q psy8285 333 Q--CHLSAVKAIAWCPWE--PTLLATGGGICDQTVRLWNSMNGK------EKCHVKTDSQVTSILWSEQYRELVTSHGKQ 402 (507)
Q Consensus 333 ~--~~~~~v~~~~~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~------~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~ 402 (507)
. ........+.|+.++ ..+...+....-+.|+.||+...+ ..+.+..+..|++++.+++|++++. |+.
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al--GT~ 301 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL--GTM 301 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE--ecc
Confidence 3 233346677787665 222222222235667777764332 2222334468999999999999999 889
Q ss_pred CCeEEEEeCCCccEEEEe-eccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 403 DCSLKMWEYPRLHLIEEL-KIHQERILSAVLSPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 403 d~~i~v~d~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
||.|.|++..+.+.++-. +.|...|+.+.|+||.+++++.+.|....+..+.-..
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd~ 357 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVDK 357 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeecc
Confidence 999999999988877655 4699999999999999999999999999999887533
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.4e-15 Score=124.84 Aligned_cols=277 Identities=18% Similarity=0.302 Sum_probs=181.1
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE- 241 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~- 241 (507)
...+..++|++.- ++.++.|..|++|+-.+.....+... ....|+|++|-|.+..-++. +..+-|.+|.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~---sQrnvtclawRPlsaselav-gCr~gIciW~~s~tl 173 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSV---SQRNVTCLAWRPLSASELAV-GCRAGICIWSDSRTL 173 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecch---hhcceeEEEeccCCcceeee-eecceeEEEEcCccc
Confidence 3456789999853 66677999999999887444333332 56789999999987444444 35667999976421
Q ss_pred ---ee--------EE--EEeecCccEEEEEe--eCCEEEEEec-CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC
Q psy8285 242 ---RL--------IQ--KLRTHMHQVIAMCW--NGNLLSCGTI-GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR 305 (507)
Q Consensus 242 ---~~--------~~--~~~~~~~~v~~~~~--~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 305 (507)
.. .+ ...+| .+|+++.| ||..+++++. +..|.|||..++...... ....+.+.-+.||||+.
T Consensus 174 n~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~-~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 174 NANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI-PKGLGGFSLLKWSPDGD 251 (445)
T ss_pred ccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc-ccCCCceeeEEEcCCCC
Confidence 11 11 12234 68999999 6888888875 467999999987633322 34456788899999999
Q ss_pred EEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC----CC--------
Q psy8285 306 YLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN----GK-------- 372 (507)
Q Consensus 306 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~----~~-------- 372 (507)
+|.++. |+..++|+.... ..........+.|....|+|+|+.++.+.++ .. ++|.+.- ..
T Consensus 252 ~lfaAt~davfrlw~e~q~---wt~erw~lgsgrvqtacWspcGsfLLf~~sg--sp--~lysl~f~~~~~~~~~~~~~k 324 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQS---WTKERWILGSGRVQTACWSPCGSFLLFACSG--SP--RLYSLTFDGEDSVFLRPQSIK 324 (445)
T ss_pred EEEEecccceeeeehhccc---ceecceeccCCceeeeeecCCCCEEEEEEcC--Cc--eEEEEeecCCCccccCcccce
Confidence 988888 899999976654 2333333345699999999999999888764 33 3443321 10
Q ss_pred ---eeeee------ec----CCCeEEEEECCCCCeEEEEeccCC------CeEEEEeCCCccEEEEe-ec--cccceeEE
Q psy8285 373 ---EKCHV------KT----DSQVTSILWSEQYRELVTSHGKQD------CSLKMWEYPRLHLIEEL-KI--HQERILSA 430 (507)
Q Consensus 373 ---~~~~~------~~----~~~i~~~~~s~~~~~l~~~~g~~d------~~i~v~d~~~~~~~~~~-~~--~~~~i~~~ 430 (507)
++..+ .+ .+++.+++|.|.|.+|++.--..+ ..|.+||.+..-.+.-. -+ ....-..+
T Consensus 325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~I 404 (445)
T KOG2139|consen 325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYI 404 (445)
T ss_pred eeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceE
Confidence 00011 11 256889999999999998531111 24667777654333222 01 01113446
Q ss_pred EECC---CCCEEEEEeCCCcEEEEecC
Q psy8285 431 VLSP---DQTCVAAASADETISIWNCF 454 (507)
Q Consensus 431 ~~s~---~~~~l~s~~~dg~i~iw~~~ 454 (507)
.|+| ++++|..+=..|.+.-|.+.
T Consensus 405 sF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 405 SFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EeeecccCCcEEEEEeccCceEeeeeE
Confidence 6666 56777777777888887764
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=147.16 Aligned_cols=289 Identities=15% Similarity=0.165 Sum_probs=196.7
Q ss_pred CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeec---CccEEEEEe----eCCEEEEEecCCeEEEEECCC
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTH---MHQVIAMCW----NGNLLSCGTIGGNILHYDVRT 280 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~ 280 (507)
..+...+.|+|-.+.++++ ...-.|++||.+.++.+..+..+ ...|+.+.+ |..++++++.||.|+||+--.
T Consensus 1064 ~~~pk~~~~hpf~p~i~~a-d~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAA-DDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCCceeeecCCCceeEEc-CCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 3456788999999999998 77789999999999888777643 456888888 567899999999999997543
Q ss_pred CC-cCcee---ee-------cCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeeeec-CCCCCeeEEEEccC
Q psy8285 281 HS-DYPTA---IT-------REGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQ-CHLSAVKAIAWCPW 347 (507)
Q Consensus 281 ~~-~~~~~---~~-------~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~~~ 347 (507)
.. ..... .. +..+.-.-+.|.....+|++++| ..|+|||.... ..+..+. +...-++++.-+-.
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E---~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKE---QVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccc---eeEeecccCCCccceeeccccc
Confidence 21 11111 11 11111134678877777888887 99999999876 4444443 23456777776655
Q ss_pred CCcEEEEEccCCCCeEEEEeCCCCCe---eeeeecC-C--CeEEEEECCCCCe-EEEEeccCCCeEEEEeCCCccEEE--
Q psy8285 348 EPTLLATGGGICDQTVRLWNSMNGKE---KCHVKTD-S--QVTSILWSEQYRE-LVTSHGKQDCSLKMWEYPRLHLIE-- 418 (507)
Q Consensus 348 ~~~~~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~-~--~i~~~~~s~~~~~-l~~~~g~~d~~i~v~d~~~~~~~~-- 418 (507)
+..++++|-+ ||.|++||.+...+ +...+.+ . +|..+.+.+.|-- |++ |+.+|.|++||++......
T Consensus 1220 ~gn~i~AGfa--DGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvS--gs~~G~I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1220 HGNIIAAGFA--DGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVS--GSQDGDIQLLDLRMSSKETFL 1295 (1387)
T ss_pred CCceEEEeec--CCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceee--eccCCeEEEEecccCcccccc
Confidence 5577777776 99999999886543 3444444 3 3899999887655 777 8999999999998742222
Q ss_pred Eeeccc--c-ceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecCCCcceEEeeccCccccceeeeeccccccc
Q psy8285 419 ELKIHQ--E-RILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAILKQPVSLTALLRSRAVEKQQ 495 (507)
Q Consensus 419 ~~~~~~--~-~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (507)
.+..|. + ..+++..+++...+|+|+. +.|+||++..........-.+-...-.-++....|....++.+.+..+..
T Consensus 1296 ~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~ 1374 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADST 1374 (1387)
T ss_pred eeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCce
Confidence 222332 3 4899999999999999998 89999999755433322111111111112233345555666677777777
Q ss_pred ceeEEeeecc
Q psy8285 496 HAIAYTVFGE 505 (507)
Q Consensus 496 ~~i~~~~~g~ 505 (507)
..|+..+.++
T Consensus 1375 V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1375 VSIYSCEKPR 1384 (1387)
T ss_pred EEEeecCCcC
Confidence 7776665543
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.9e-16 Score=139.01 Aligned_cols=182 Identities=18% Similarity=0.269 Sum_probs=142.1
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee------cC
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT------HM 251 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~------~~ 251 (507)
++.++....|+-++++.|.....+.. ..+.+.++..++...+|++| +.+|.|..||.+....+..+.. |.
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~---~~~~lN~v~in~~hgLla~G-t~~g~VEfwDpR~ksrv~~l~~~~~v~s~p 223 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFET---DSGELNVVSINEEHGLLACG-TEDGVVEFWDPRDKSRVGTLDAASSVNSHP 223 (703)
T ss_pred EEEeecCcceEEEEcccccccccccc---ccccceeeeecCccceEEec-ccCceEEEecchhhhhheeeecccccCCCc
Confidence 77888888999999999998877776 55889999999999899888 9999999999988766655542 33
Q ss_pred c-----cEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCC--CCEEEEEeCCcEEEEEcCC
Q psy8285 252 H-----QVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN--GRYLASGSNNTVKIWDFRQ 322 (507)
Q Consensus 252 ~-----~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~d~~i~i~d~~~ 322 (507)
+ .|+++.| +|-.+++|+..|.+.|||+++.+.....-.....+|..+.|.+. ++.+++.....++|||-.+
T Consensus 224 g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~ 303 (703)
T KOG2321|consen 224 GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECT 303 (703)
T ss_pred cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhccccc
Confidence 3 4899999 47889999999999999999987444444455668899999875 4456655559999999999
Q ss_pred CCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC
Q psy8285 323 LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN 370 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 370 (507)
+ ++...+. ....+..+++-|++..+++ +.. +..+..|-+..
T Consensus 304 G---k~~asiE-pt~~lND~C~~p~sGm~f~-Ane--~~~m~~yyiP~ 344 (703)
T KOG2321|consen 304 G---KPMASIE-PTSDLNDFCFVPGSGMFFT-ANE--SSKMHTYYIPS 344 (703)
T ss_pred C---Cceeecc-ccCCcCceeeecCCceEEE-ecC--CCcceeEEccc
Confidence 8 7776666 4455999999998865555 432 66666665543
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-16 Score=139.07 Aligned_cols=246 Identities=16% Similarity=0.255 Sum_probs=174.4
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEE-eCCCceeEEEEeecCccEEEE------Ee----eCCEEEEEecCCeEEE
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLW-HEQEERLIQKLRTHMHQVIAM------CW----NGNLLSCGTIGGNILH 275 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~v~~~------~~----~~~~l~~~~~dg~i~i 275 (507)
|...+.|+.|+.+...+.++ .|..+.+| |+.+ .....+.-...-+... +- ..+.|+.++.||.+.+
T Consensus 13 ~~e~vc~v~w~~~eei~~~~--dDh~~~~~~~~~~-~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVS--DDHQIFKWSDVSR-DSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred cceeEEeecccccceEEEec--cCceEEEeecccc-hhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 66678899999887777666 45555555 4433 2222221111111111 11 2457888999999998
Q ss_pred EECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEE
Q psy8285 276 YDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLAT 354 (507)
Q Consensus 276 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 354 (507)
.+-.. ........|.+.+.+-.|+|||.-|++++ ||.|++|.-... ...++.....+|+|++|.|+.+.++.+
T Consensus 90 l~k~~--rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM----LRStl~Q~~~~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 90 LNKSA--RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM----LRSTVVQNEESIRCARWAPNSNSIVFC 163 (737)
T ss_pred ecccc--hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch----HHHHHhhcCceeEEEEECCCCCceEEe
Confidence 87554 34667889999999999999999999988 799999986543 333444467789999999999888887
Q ss_pred EccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEEC
Q psy8285 355 GGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLS 433 (507)
Q Consensus 355 ~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s 433 (507)
.+ +.+.|=.+.....+...+.| +-|.++.|++....+++ |++|-..+|||. .|..+..-..|..+|++++|+
T Consensus 164 ~g----~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~s--gGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~n 236 (737)
T KOG1524|consen 164 QG----GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIAS--GGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFN 236 (737)
T ss_pred cC----CeEEEeecccccceeEEeccCcEEEEeecCccccceee--cCCceeEEeecc-cCcccccCChhccceeeeeec
Confidence 64 57777777666555555555 78999999999999999 899999999995 567777778899999999999
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCcccceeecCCCcceEEeeccCcc
Q psy8285 434 PDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAILKQPV 480 (507)
Q Consensus 434 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (507)
|+ ..++.+|.. ++++=+ +..+++-.+.|+++....
T Consensus 237 pd-~~~~v~S~n-t~R~~~----------p~~GSifnlsWS~DGTQ~ 271 (737)
T KOG1524|consen 237 PE-KDYLLWSYN-TARFSS----------PRVGSIFNLSWSADGTQA 271 (737)
T ss_pred cc-cceeeeeee-eeeecC----------CCccceEEEEEcCCCcee
Confidence 99 555656543 455211 122345566677665543
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-15 Score=130.79 Aligned_cols=247 Identities=14% Similarity=0.190 Sum_probs=181.3
Q ss_pred ecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC------ceeEEEEee-cCccEEEEEee--CCEEEEEecCCe
Q psy8285 202 EYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE------ERLIQKLRT-HMHQVIAMCWN--GNLLSCGTIGGN 272 (507)
Q Consensus 202 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~------~~~~~~~~~-~~~~v~~~~~~--~~~l~~~~~dg~ 272 (507)
.+.+ |.+.|.++.|+.++++|+++ +.|..+++|++.. .+++..... |...|.|++|+ +..+++|..+++
T Consensus 51 D~~~-H~GCiNAlqFS~N~~~L~SG-GDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 51 DVRE-HTGCINALQFSHNDRFLASG-GDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhh-hccccceeeeccCCeEEeec-CCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 3445 99999999999999999999 9999999999863 355555443 66899999994 778999999999
Q ss_pred EEEEECCCCCcCceee--ecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCC
Q psy8285 273 ILHYDVRTHSDYPTAI--TREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEP 349 (507)
Q Consensus 273 i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 349 (507)
|...|+.+.+.+ ..+ ....+.|+.+..+|..+.|++.++ +.|.+||.+.....-....+.........+.|+|..+
T Consensus 129 VI~HDiEt~qsi-~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 129 VIKHDIETKQSI-YVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred eEeeecccceee-eeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 999999987632 222 123458999999999889998885 9999999997632222333333556788999999999
Q ss_pred cEEEEEccCCCCeEEEEeCCCCCe-eee------eec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE-EEEe
Q psy8285 350 TLLATGGGICDQTVRLWNSMNGKE-KCH------VKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL-IEEL 420 (507)
Q Consensus 350 ~~~~~~~~~~d~~i~i~d~~~~~~-~~~------~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~-~~~~ 420 (507)
.|+++.+. .+-+-+||.+..+. +.. +.. .....++.|+|.|..+++ --....-.+||+-+.++ +..+
T Consensus 208 ~Li~~~~~--~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~ms--iRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 208 ALILVNSE--TGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMS--IRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred eeEEeccc--cCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehh--hhccCCCEEeeeecccceeEec
Confidence 99998875 78899999876542 211 111 123467899999999988 34444556778766443 2222
Q ss_pred eccc-------cceeEEEECCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 421 KIHQ-------ERILSAVLSPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 421 ~~~~-------~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
. |. ..+.+++|--| ..+++|+.+=.|++|.+....
T Consensus 284 D-~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 284 D-HNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred c-CCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCCc
Confidence 2 22 24666777655 459999999999999997543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.2e-15 Score=143.12 Aligned_cols=237 Identities=12% Similarity=0.069 Sum_probs=159.2
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCC--CCcEEEEeCCCceeEEEEeecCccEEEEEe--e
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTC--TEYIDLWHEQEERLIQKLRTHMHQVIAMCW--N 260 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~ 260 (507)
..|++||....+...+.. +...+.+.+|+|+|+.|+.+... +..|.+||+.+++... +........+..| |
T Consensus 184 ~~l~i~D~~g~~~~~lt~----~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpD 258 (433)
T PRK04922 184 YALQVADSDGYNPQTILR----SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPD 258 (433)
T ss_pred EEEEEECCCCCCceEeec----CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCC
Confidence 369999986655544443 56789999999999999987222 3469999998876533 3333444456677 6
Q ss_pred CCEEE-EEecCC--eEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC--Cc--EEEEEcCCCCCCCCeeeec
Q psy8285 261 GNLLS-CGTIGG--NILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN--NT--VKIWDFRQLDAKRPQVNNQ 333 (507)
Q Consensus 261 ~~~l~-~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--~~--i~i~d~~~~~~~~~~~~~~ 333 (507)
++.|+ +.+.+| .|++||+.+++ ...+..+.......+|+|||+.|+..++ +. |+++|+..+ . ...+.
T Consensus 259 G~~l~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g---~-~~~lt 332 (433)
T PRK04922 259 GRRLALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG---S-AERLT 332 (433)
T ss_pred CCEEEEEEeCCCCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---C-eEEee
Confidence 87665 445555 59999998765 3445555555667899999999988874 44 666666554 2 22222
Q ss_pred CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEecc-CCCeEEEEeCC
Q psy8285 334 CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGK-QDCSLKMWEYP 412 (507)
Q Consensus 334 ~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~-~d~~i~v~d~~ 412 (507)
.+......++|+|+|+.++++........|.+||+.+++.. .+..........|+|||++++.++.. ..+.|.++++.
T Consensus 333 ~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 333 FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred cCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 23344557899999988877654211347999999888755 33333345567999999998874211 13468888875
Q ss_pred CccEEEEeeccccceeEEEECC
Q psy8285 413 RLHLIEELKIHQERILSAVLSP 434 (507)
Q Consensus 413 ~~~~~~~~~~~~~~i~~~~~s~ 434 (507)
+.....+..+.+.+...+|+|
T Consensus 412 -g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 412 -GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CCceEEcccCCCCCCCCccCC
Confidence 445566665667788888887
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.4e-16 Score=138.08 Aligned_cols=257 Identities=14% Similarity=0.241 Sum_probs=176.4
Q ss_pred EEEEEcCCeEEEEECCCCce----eEEEecCCCCCCceEEEEE-----ccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe
Q psy8285 178 TLAVALDTSVYTWNTKTNKT----QLLVEYPTYDNAYISCVAW-----KPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~----~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~ 248 (507)
.+.-.....+++|+...+.. +....+. ....+|-+| .|++--++++ -.-|.|.+.|....+..+.+.
T Consensus 137 ~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~---gt~P~cHdfn~~~a~~~g~dllIG-f~tGqvq~idp~~~~~sklfn 212 (636)
T KOG2394|consen 137 RLCFNVGRELYVYSYRGAADLSKPIDKREYK---GTSPTCHDFNSFTATPKGLDLLIG-FTTGQVQLIDPINFEVSKLFN 212 (636)
T ss_pred EEEEecCCeEEEEEccCcchhccchhhhccc---CCCCceecccccccCCCCcceEEe-eccCceEEecchhhHHHHhhh
Confidence 55556677888998874321 1111121 223344444 3556677777 788999999877633222121
Q ss_pred ----ecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcC
Q psy8285 249 ----THMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFR 321 (507)
Q Consensus 249 ----~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~ 321 (507)
-....++++.| +...++++-.+|.+++||..-.. +... .+....+++..++... |.-.
T Consensus 213 e~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-------~~t~--p~~~~~k~~~~f~i~t------~ksk 277 (636)
T KOG2394|consen 213 EERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-------GATA--PSYQALKDGDQFAILT------SKSK 277 (636)
T ss_pred hcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc-------cCCC--CcccccCCCCeeEEee------eecc
Confidence 13478999999 67788888999999999873211 0000 0111223444444332 1111
Q ss_pred CCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEec
Q psy8285 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHG 400 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g 400 (507)
.. ..++..+.--.+.|..++|+|||++|.+++. ||.++|||..+.+.+..++.- +...|++|||||+||++ |
T Consensus 278 ~~--rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq---DGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvt--G 350 (636)
T KOG2394|consen 278 KT--RNPVARWHIGEGSINEFAFSPDGKYLATVSQ---DGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVT--G 350 (636)
T ss_pred cc--CCccceeEeccccccceeEcCCCceEEEEec---CceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEe--c
Confidence 00 0234444445568999999999977776665 999999999988877766654 78999999999999999 9
Q ss_pred cCCCeEEEEeCCCccEEEEeeccccceeEEEECC-------------------------------C----C---------
Q psy8285 401 KQDCSLKMWEYPRLHLIEELKIHQERILSAVLSP-------------------------------D----Q--------- 436 (507)
Q Consensus 401 ~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~-------------------------------~----~--------- 436 (507)
++|..|.||.+...+.+..-++|...|..++|.| + +
T Consensus 351 GEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~ 430 (636)
T KOG2394|consen 351 GEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRI 430 (636)
T ss_pred CCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccc
Confidence 9999999999999999999999999999999983 0 1
Q ss_pred ----CEEEEEeCCCcEEEEecCCCCccc
Q psy8285 437 ----TCVAAASADETISIWNCFPRDKKR 460 (507)
Q Consensus 437 ----~~l~s~~~dg~i~iw~~~~~~~~~ 460 (507)
-.+.+.+.|-.+++||+.......
T Consensus 431 ~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 431 NSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred cceEEEeecccccceEEEEecchhhccc
Confidence 146778899999999998665444
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-15 Score=141.39 Aligned_cols=216 Identities=13% Similarity=0.140 Sum_probs=147.3
Q ss_pred CcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecC---CeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC
Q psy8285 231 EYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIG---GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR 305 (507)
Q Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 305 (507)
..|.+||... ...+.+..+...+....| |++.|+..+.+ ..|++||+.+++ ...+........+++|+|||+
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~--~~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ--RELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC--EEEeccCCCCccCceECCCCC
Confidence 3688999754 444556667778888888 78888887643 469999998765 333444444556789999999
Q ss_pred EEEEE-e-C--CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC
Q psy8285 306 YLASG-S-N--NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS 381 (507)
Q Consensus 306 ~l~~~-~-d--~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 381 (507)
.++.. + + ..|++||+.++ ....+..+......++|+|||+.++++........|+++|+.+++.........
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g----~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~ 336 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSR----QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN 336 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCC----CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC
Confidence 87654 3 3 46999999876 234455455556789999999888777643112357777887776443322233
Q ss_pred CeEEEEECCCCCeEEEEeccCC--CeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCC---CcEEEEecCCC
Q psy8285 382 QVTSILWSEQYRELVTSHGKQD--CSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASAD---ETISIWNCFPR 456 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d--~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d---g~i~iw~~~~~ 456 (507)
....++|+|+|++|+..+. .+ ..|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|.++++...
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred CccCEEECCCCCEEEEEEC-CCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 4557899999999988532 22 26999999887654 343 22345678999999988776653 35777777543
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-15 Score=125.22 Aligned_cols=225 Identities=16% Similarity=0.259 Sum_probs=172.8
Q ss_pred eecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCC--cCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q psy8285 248 RTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHS--DYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQ 322 (507)
Q Consensus 248 ~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~ 322 (507)
.....+|+|.+| |...+|.+.....|.||...... +....+..|...|+.++|+|..+.|++++ |..-++|....
T Consensus 7 ~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 7 HRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred eeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCC
Confidence 335678999999 68899999999999999988765 35667889999999999999999999999 79999999966
Q ss_pred CCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCee---eee--ecCCCeEEEEECCCCCeEEE
Q psy8285 323 LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK---CHV--KTDSQVTSILWSEQYRELVT 397 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~---~~~--~~~~~i~~~~~s~~~~~l~~ 397 (507)
+...++...+..+....+++.|+|.+ +.++++++ -+.|.+|-.+...-- +.+ ...+.|+++.|+|++-.|++
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSg--ar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSG--ARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC-ceEEeccC--ccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 65556666777789999999999988 56677765 788888877544321 112 22367999999999999999
Q ss_pred EeccCCCeEEEEeCC------------------CccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 398 SHGKQDCSLKMWEYP------------------RLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 398 ~~g~~d~~i~v~d~~------------------~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
|+.|+..+||... -|+++.++....+.+..+.|+|+|..|+-.+.|..+.+=|...+.+.
T Consensus 164 --Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~ 241 (361)
T KOG1523|consen 164 --GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER 241 (361)
T ss_pred --cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence 9999999999741 12334444445678999999999999999999999999998876532
Q ss_pred --cceeecCCCcceEEeecc
Q psy8285 460 --RKARQVGSGSSLEFAILK 477 (507)
Q Consensus 460 --~~~~~~~~~~~~~~~~~~ 477 (507)
.......+..++.|..+.
T Consensus 242 v~~~~~~~lP~ls~~~ise~ 261 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISEN 261 (361)
T ss_pred ccchhhccCCceeeEeecCC
Confidence 122222455555554443
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-14 Score=137.67 Aligned_cols=219 Identities=9% Similarity=0.076 Sum_probs=152.8
Q ss_pred CcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEec---CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC
Q psy8285 231 EYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTI---GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR 305 (507)
Q Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 305 (507)
..|.++|... ...+.+..+...+....| |++.|+..+. +..|++||+.+++ ...+..+.+.+...+|+|||+
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--~~~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--RELVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc--EEEeecCCCcccCcEECCCCC
Confidence 3788888754 455566678888999999 7888887763 4689999998765 344555666778899999999
Q ss_pred EEEEEe--C--CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC
Q psy8285 306 YLASGS--N--NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS 381 (507)
Q Consensus 306 ~l~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 381 (507)
.|+... + ..|++||+.++ ....+..+........|+|||+.++++........|+++|+..++.........
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~----~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~ 334 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSG----TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGG 334 (435)
T ss_pred EEEEEEecCCCceEEEEECCCC----ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCC
Confidence 876543 3 45788888765 344555566667789999999888776643223478899987766544433345
Q ss_pred CeEEEEECCCCCeEEEEecc-CCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCC------CcEEEEecC
Q psy8285 382 QVTSILWSEQYRELVTSHGK-QDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASAD------ETISIWNCF 454 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~-~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d------g~i~iw~~~ 454 (507)
.+....|+|+|++|+..... .+..|.+||+..+.. ..+. ....+..+.|+|||+.|+..+.+ ..++++++.
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~ 412 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT 412 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence 56778999999999885311 123688899765543 3333 23356788999999988765543 257777876
Q ss_pred CCCc
Q psy8285 455 PRDK 458 (507)
Q Consensus 455 ~~~~ 458 (507)
....
T Consensus 413 g~~~ 416 (435)
T PRK05137 413 GRNE 416 (435)
T ss_pred CCce
Confidence 5544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-14 Score=138.55 Aligned_cols=236 Identities=12% Similarity=0.137 Sum_probs=162.0
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC--CCCcEEEEeCCCceeEEEEeecCccEEEEEe--e
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT--CTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--N 260 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~ 260 (507)
..|+++|........+.. +...+.+.+|+|||+.|+.... .+..|.+||+.+++.. .+..+...+....| |
T Consensus 182 ~~l~~~d~dg~~~~~lt~----~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPD 256 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTD----GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPD 256 (435)
T ss_pred eEEEEECCCCCCcEEEec----CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCC
Confidence 489999986655544433 6778999999999999988722 2468999999887653 44455666677777 7
Q ss_pred CCEEE-EEecCCe--EEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC--C--cEEEEEcCCCCCCCCeeeec
Q psy8285 261 GNLLS-CGTIGGN--ILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN--N--TVKIWDFRQLDAKRPQVNNQ 333 (507)
Q Consensus 261 ~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--~--~i~i~d~~~~~~~~~~~~~~ 333 (507)
|+.|+ +.+.++. |++||+.++. ...+..+........|+|||+.|+..++ + .|+++|+..+ ....+.
T Consensus 257 G~~la~~~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~----~~~~lt 330 (435)
T PRK05137 257 GRKVVMSLSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS----NPRRIS 330 (435)
T ss_pred CCEEEEEEecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC----CeEEee
Confidence 87765 4555554 7777888764 3455556666778999999999888773 3 6888887654 333443
Q ss_pred CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCC----CeEEEE
Q psy8285 334 CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQD----CSLKMW 409 (507)
Q Consensus 334 ~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d----~~i~v~ 409 (507)
.+...+....|+|+|+.++++.....+..|.+||+..+.. ..+.....+..+.|+|||+.|+.++.... ..++++
T Consensus 331 ~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 331 FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 3455667789999998887766431235788999865543 34433345678899999999987532111 368888
Q ss_pred eCCCccEEEEeeccccceeEEEECC
Q psy8285 410 EYPRLHLIEELKIHQERILSAVLSP 434 (507)
Q Consensus 410 d~~~~~~~~~~~~~~~~i~~~~~s~ 434 (507)
|+..+.. ..+. ..+.+...+|+|
T Consensus 410 dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 410 DLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred ECCCCce-EEcc-CCCCccCcccCC
Confidence 8866554 3444 244567778876
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-15 Score=124.92 Aligned_cols=232 Identities=19% Similarity=0.282 Sum_probs=174.4
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc---eeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE---RLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTH 281 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~ 281 (507)
-..+|+|.+|++|...+|++ .....|.||..... +...+++.|...|+.++| ..+.|++++.|..-++|....+
T Consensus 9 ~~~pitchAwn~drt~iAv~-~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVS-PNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred ccCceeeeeecCCCceEEec-cCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 45789999999999999999 88889999988765 467788899999999999 5779999999999999998543
Q ss_pred C--cCceeeecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCe-eeecCCCCCeeEEEEccCCCcEEEEEcc
Q psy8285 282 S--DYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQ-VNNQCHLSAVKAIAWCPWEPTLLATGGG 357 (507)
Q Consensus 282 ~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 357 (507)
. .+...+..+....+++.|+|.++.||+|+. ..|.+|-++..+.--.. ..-..+...|.+++|+|++ -++++|+-
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VLlaaGs~ 166 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VLLAAGST 166 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-ceeccccc
Confidence 3 244556678889999999999999999995 88889888765222111 1223467789999999987 56666654
Q ss_pred CCCCeEEEEeCC-----C-------------CCeeeee-ecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc-EE
Q psy8285 358 ICDQTVRLWNSM-----N-------------GKEKCHV-KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH-LI 417 (507)
Q Consensus 358 ~~d~~i~i~d~~-----~-------------~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~-~~ 417 (507)
|+..++|..- . |+.+..+ ...+.+..+.|+|+|..|+. .+.|..+.+-|..... .+
T Consensus 167 --D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~law--v~Hds~v~~~da~~p~~~v 242 (361)
T KOG1523|consen 167 --DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAW--VGHDSTVSFVDAAGPSERV 242 (361)
T ss_pred --CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeE--ecCCCceEEeecCCCchhc
Confidence 9999998742 1 1223333 33468999999999999999 6789999999977654 34
Q ss_pred EEeeccccceeEEEECCCCCEEEEEeCC
Q psy8285 418 EELKIHQERILSAVLSPDQTCVAAASAD 445 (507)
Q Consensus 418 ~~~~~~~~~i~~~~~s~~~~~l~s~~~d 445 (507)
..+....-+..++.|-.+.. ++.++.|
T Consensus 243 ~~~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 243 QSVATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred cchhhccCCceeeEeecCCc-eeecCCC
Confidence 44443346777777765433 3334444
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.3e-15 Score=139.74 Aligned_cols=241 Identities=14% Similarity=0.099 Sum_probs=156.5
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC--CcEEEEeCCCceeEEEEeecCccEEEEEe--e
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT--EYIDLWHEQEERLIQKLRTHMHQVIAMCW--N 260 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~ 260 (507)
..|+++|........+.. +...+.+.+|+|+|+.|+.+...+ ..|.+||+.+++... +...........| |
T Consensus 176 ~~L~~~D~dG~~~~~l~~----~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPD 250 (427)
T PRK02889 176 YQLQISDADGQNAQSALS----SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPD 250 (427)
T ss_pred cEEEEECCCCCCceEecc----CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCC
Confidence 478888875444343333 667899999999999998872223 359999999886543 3333445566777 7
Q ss_pred CCEEE-EEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC--CcEEEEEcCCCCCCCCeeeecCCCC
Q psy8285 261 GNLLS-CGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN--NTVKIWDFRQLDAKRPQVNNQCHLS 337 (507)
Q Consensus 261 ~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~ 337 (507)
++.|+ +.+.+|...+|.++........+..+........|+|||+.|+..++ +...+|.+.... .....+.....
T Consensus 251 G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~--g~~~~lt~~g~ 328 (427)
T PRK02889 251 GRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG--GAAQRVTFTGS 328 (427)
T ss_pred CCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC--CceEEEecCCC
Confidence 87776 45677776665543222224445555555677899999999887773 666777654321 12222222233
Q ss_pred CeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCC--eEEEEeCCCcc
Q psy8285 338 AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDC--SLKMWEYPRLH 415 (507)
Q Consensus 338 ~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~--~i~v~d~~~~~ 415 (507)
......|+|+|+.++.+.....+..|.+||+.+++.... ..........|+|||+.|+.++ ...| .+.+.+. +++
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~l-t~~~~~~~p~~spdg~~l~~~~-~~~g~~~l~~~~~-~g~ 405 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTAL-TDTTRDESPSFAPNGRYILYAT-QQGGRSVLAAVSS-DGR 405 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEc-cCCCCccCceECCCCCEEEEEE-ecCCCEEEEEEEC-CCC
Confidence 445689999998877766421123799999988875443 3333446789999999999853 2333 4666676 455
Q ss_pred EEEEeeccccceeEEEECCC
Q psy8285 416 LIEELKIHQERILSAVLSPD 435 (507)
Q Consensus 416 ~~~~~~~~~~~i~~~~~s~~ 435 (507)
....+..+.+.+...+|+|-
T Consensus 406 ~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 406 IKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ceEEeecCCCCCCCCccCCC
Confidence 66666666777888899874
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.2e-15 Score=126.09 Aligned_cols=292 Identities=12% Similarity=0.178 Sum_probs=200.9
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce-----eEEEEeecC------------ccEEEEEe----eCCEEE
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER-----LIQKLRTHM------------HQVIAMCW----NGNLLS 265 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~----~~~~l~ 265 (507)
..+-|.++.|...|.+|++| ..+|.|.++.-.... ....++.|. ..|..+.| +...++
T Consensus 24 eadiis~vef~~~Ge~LatG-dkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATG-DKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeecccceEeec-CCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 34568999999999999999 999999999754322 233444454 34677888 466788
Q ss_pred EEecCCeEEEEECCCCCcCc-----------------------------------eeeecCCCceEEEEEcCCCCEEEEE
Q psy8285 266 CGTIGGNILHYDVRTHSDYP-----------------------------------TAITREGDVVCGLKWSPNGRYLASG 310 (507)
Q Consensus 266 ~~~~dg~i~i~d~~~~~~~~-----------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~ 310 (507)
..+.|.+|++|.+....... .....|...|+++.++.|+..++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 88889999999987543111 0112467778999999999999999
Q ss_pred eCCcEEEEEcCCCCCCCCeeeecCCC-----CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCee----eeeec--
Q psy8285 311 SNNTVKIWDFRQLDAKRPQVNNQCHL-----SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK----CHVKT-- 379 (507)
Q Consensus 311 ~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~----~~~~~-- 379 (507)
.|-.|.+|+++-.+..-.+..++.+. .-|++..|+|....+++-++. .|+|++-|++..... ..+..
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSS--KGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSS--KGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecC--CCcEEEeechhhhhhcchhhhhcccc
Confidence 99999999998654333444444332 358899999988777776664 999999999853211 11110
Q ss_pred -----------CCCeEEEEECCCCCeEEEEeccCCCeEEEEeC-CCccEEEEeecccc------------c---eeEEEE
Q psy8285 380 -----------DSQVTSILWSEQYRELVTSHGKQDCSLKMWEY-PRLHLIEELKIHQE------------R---ILSAVL 432 (507)
Q Consensus 380 -----------~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~-~~~~~~~~~~~~~~------------~---i~~~~~ 432 (507)
-..|..+.|+++|+|+++ - +=-+|++||+ ...+++.+++.|.. . -..++|
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryils--R-Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILS--R-DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW 337 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEE--e-ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence 135888999999999998 2 2368999999 45677777766642 1 235789
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCCCccccee-------ecCCCcceEEee----------ccCccccceeeeeccccccc
Q psy8285 433 SPDQTCVAAASADETISIWNCFPRDKKRKAR-------QVGSGSSLEFAI----------LKQPVSLTALLRSRAVEKQQ 495 (507)
Q Consensus 433 s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-------~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 495 (507)
+-++.+++||+....++++++..+....... ....+..+.... ....+.....+...+|||..
T Consensus 338 sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~e 417 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKE 417 (433)
T ss_pred cCCcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCcc
Confidence 9999999999999999999976543322110 011111111111 11112333467789999999
Q ss_pred ceeEEeeec
Q psy8285 496 HAIAYTVFG 504 (507)
Q Consensus 496 ~~i~~~~~g 504 (507)
..|+-..+.
T Consensus 418 n~ia~aatn 426 (433)
T KOG1354|consen 418 NSIAVAATN 426 (433)
T ss_pred ceeeeeecC
Confidence 999887664
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=6e-14 Score=126.89 Aligned_cols=319 Identities=13% Similarity=0.163 Sum_probs=220.4
Q ss_pred eeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEE----eCC-----CCcEEEEe
Q psy8285 168 TSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVT----NTC-----TEYIDLWH 237 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~~-----dg~i~iwd 237 (507)
.+..++|++| +++.+.+..++|++..++....... .. .++++.|+|.+.+|.+- -.. .-.+++|+
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~----~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVE----LK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEec----cc-eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 4568888988 8889999999999998886332222 23 79999999999998862 011 23578999
Q ss_pred CCCceeEEEEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCC--CEEEEE----
Q psy8285 238 EQEERLIQKLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNG--RYLASG---- 310 (507)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~---- 310 (507)
+.++.....++.....-++..| ....+++=-..+.+.+|++.....+.. .-|...|..+.++|.+ ..+|+-
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~--kl~~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH--KLSVSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred eccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceee--eeeccceeeEEecCCCCCceEEEEccCC
Confidence 9986555555543333367888 344444444567899999988553333 3356788889999863 345542
Q ss_pred -eC-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC---------CCeEEEEeCCCCCeeeeeec
Q psy8285 311 -SN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC---------DQTVRLWNSMNGKEKCHVKT 379 (507)
Q Consensus 311 -~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------d~~i~i~d~~~~~~~~~~~~ 379 (507)
+- ..|+||..........+..-.-....-..+.|++-|.-+|+..+..- +.+++++++....+...+..
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k 269 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK 269 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC
Confidence 22 78999988743222222211112333347889988877665553212 34789999886677777777
Q ss_pred CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCC---CcEEEEecCCC
Q psy8285 380 DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASAD---ETISIWNCFPR 456 (507)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d---g~i~iw~~~~~ 456 (507)
.++|.++.|+|+++.++++.|..-..+.|||++ +.++..+. .++-+++-|+|.|++|+.++-+ |.|-|||+.+.
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence 899999999999999988889999999999975 56666664 5667889999999999988764 88999999997
Q ss_pred CcccceeecCCCcceEEeeccCccccceeeeecccccccce
Q psy8285 457 DKKRKARQVGSGSSLEFAILKQPVSLTALLRSRAVEKQQHA 497 (507)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (507)
+.+.+.... ...-.+|+|++.-|...........++...+
T Consensus 347 K~i~~~~a~-~tt~~eW~PdGe~flTATTaPRlrvdNg~Ki 386 (566)
T KOG2315|consen 347 KLIAKFKAA-NTTVFEWSPDGEYFLTATTAPRLRVDNGIKI 386 (566)
T ss_pred hhccccccC-CceEEEEcCCCcEEEEEeccccEEecCCeEE
Confidence 777665433 3445688888776544443334444443333
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.3e-14 Score=126.78 Aligned_cols=344 Identities=18% Similarity=0.240 Sum_probs=215.8
Q ss_pred ceeeeeeccCcceeeeccccccccceeeecccCCcceeeeecCcccceeeccccccccccCCccCCceeEeecCCccccc
Q psy8285 8 AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRESSRSKMVNTDRYVVDRSSYDSLC 87 (507)
Q Consensus 8 ~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (507)
.++..++|++|+. +|-+. +..|+|.+..++..+-+.... .+..+.|||-+..+...-
T Consensus 36 ~~~v~~~S~~G~l-fA~~~---~~~v~i~~~~~~~~~lt~~~~-~~~~L~fSP~g~yL~T~e------------------ 92 (566)
T KOG2315|consen 36 PCNVFAYSNNGRL-FAYSD---NQVVKVFEIATLKVVLCVELK-KTYDLLFSPKGNYLLTWE------------------ 92 (566)
T ss_pred cceeEEEcCCCcE-EEEEc---CCeEEEEEccCCcEEEEeccc-eeeeeeeccccccccccc------------------
Confidence 3677889999885 88775 899999999998755555545 889999998887655421
Q ss_pred cccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCCCcccccc
Q psy8285 88 SHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSIINDFY 167 (507)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (507)
.+.+..+.. ....++.++.... . .+...+... .+.+.
T Consensus 93 -~~~i~~~~~--------------------~~~pn~~v~~vet-~-------------------~~~s~~q~k-~Q~~W- 129 (566)
T KOG2315|consen 93 -PWAIYGPKN--------------------ASNPNVLVYNVET-G-------------------VQRSQIQKK-MQNGW- 129 (566)
T ss_pred -ccccccCCC--------------------CCCCceeeeeecc-c-------------------eehhheehh-hhcCc-
Confidence 001000000 0000111111110 0 000000000 01111
Q ss_pred eeeeeeCCCCEEEE-EcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCC--eEEEE----eCCCCcEEEEeCCC
Q psy8285 168 TSGLDWGYHDTLAV-ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTT--DLAVT----NTCTEYIDLWHEQE 240 (507)
Q Consensus 168 i~~~~~s~~~~~~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~----~~~dg~i~iwd~~~ 240 (507)
+..|+.|..+++ -..+.+++|++.+.+.. ...+ |...|+.+.++|... .+|+- .+.-+.++||....
T Consensus 130 --~~qfs~dEsl~arlv~nev~f~~~~~f~~~-~~kl---~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~ 203 (566)
T KOG2315|consen 130 --VPQFSIDESLAARLVSNEVQFYDLGSFKTI-QHKL---SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPE 203 (566)
T ss_pred --ccccccchhhhhhhhcceEEEEecCCccce-eeee---eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccc
Confidence 467888874444 47889999999874432 2233 677899999999743 33331 24456899998763
Q ss_pred ceeEEEE---eecCccEEEEEee--C-CEEEEEec--C---------CeEEEEECCCCCcCceeeecCCCceEEEEEcCC
Q psy8285 241 ERLIQKL---RTHMHQVIAMCWN--G-NLLSCGTI--G---------GNILHYDVRTHSDYPTAITREGDVVCGLKWSPN 303 (507)
Q Consensus 241 ~~~~~~~---~~~~~~v~~~~~~--~-~~l~~~~~--d---------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 303 (507)
...-..+ .-....-..+.|+ + .+|+.++. | .+++++++.... ...-....++|+++.|+|+
T Consensus 204 ~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s--~~V~L~k~GPVhdv~W~~s 281 (566)
T KOG2315|consen 204 EGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES--VSVPLLKEGPVHDVTWSPS 281 (566)
T ss_pred ccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce--EEEecCCCCCceEEEECCC
Confidence 3221111 1122223356664 2 23333332 2 357777777322 2223334789999999999
Q ss_pred CCEEEEEe--C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC
Q psy8285 304 GRYLASGS--N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380 (507)
Q Consensus 304 ~~~l~~~~--d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 380 (507)
++-++++. - ..+.|||++. .++..+ ..++-+++-|+|.|+.++.+|-+...|.+.+||+.+.+++..+...
T Consensus 282 ~~EF~VvyGfMPAkvtifnlr~----~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~ 355 (566)
T KOG2315|consen 282 GREFAVVYGFMPAKVTIFNLRG----KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA 355 (566)
T ss_pred CCEEEEEEecccceEEEEcCCC----CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC
Confidence 98877765 3 8999999986 455555 5677789999999988888888888899999999998888777654
Q ss_pred CCeEEEEECCCCCeEEEEecc----CCCeEEEEeCCCccEEEEeeccccceeEEEECC
Q psy8285 381 SQVTSILWSEQYRELVTSHGK----QDCSLKMWEYPRLHLIEELKIHQERILSAVLSP 434 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~----~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~ 434 (507)
.-+-+.|+|||+++++++.+ .|+.++||+. +|..+....- ......+.|-|
T Consensus 356 -~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f-~sEL~qv~W~P 410 (566)
T KOG2315|consen 356 -NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMF-KSELLQVEWRP 410 (566)
T ss_pred -CceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhh-hHhHhheeeee
Confidence 34668999999999997533 4788999997 4555544321 11577788876
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-14 Score=134.01 Aligned_cols=232 Identities=13% Similarity=0.048 Sum_probs=153.0
Q ss_pred cEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEec---CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCE
Q psy8285 232 YIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTI---GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY 306 (507)
Q Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 306 (507)
.|.++|...... +.+..+...+....| ||+.|+..+. +..|++|++.+++ ...+......+..+.|+|||+.
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~--~~~l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC--eEEccCCCCCcCCeEECCCCCE
Confidence 688888775443 344456667888888 7888886542 3579999998765 2333333444556899999998
Q ss_pred EEEEe--CC--cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC--eEEEEeCCCCCeeeeeecC
Q psy8285 307 LASGS--NN--TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ--TVRLWNSMNGKEKCHVKTD 380 (507)
Q Consensus 307 l~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~ 380 (507)
|+... ++ .|++||+.++ ....+..+...+....|+|||+.++++... ++ .|.++|+.+++........
T Consensus 257 La~~~~~~g~~~I~~~d~~tg----~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~--~g~~~Iy~~d~~~g~~~~lt~~~ 330 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASG----QIRQVTDGRSNNTEPTWFPDSQNLAYTSDQ--AGRPQVYKVNINGGAPQRITWEG 330 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCC----CEEEccCCCCCcCceEECCCCCEEEEEeCC--CCCceEEEEECCCCCeEEeecCC
Confidence 88754 33 5899999875 334444455567899999999888776653 33 5666677776554332223
Q ss_pred CCeEEEEECCCCCeEEEEeccCC--CeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCc---EEEEecCC
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQD--CSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADET---ISIWNCFP 455 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d--~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~---i~iw~~~~ 455 (507)
.......|+|||++|+.. ...+ ..|.+||+.+++.. .+.. ........|+|||++|+.++.++. +.++++..
T Consensus 331 ~~~~~~~~SpDG~~Ia~~-~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 331 SQNQDADVSSDGKFMVMV-SSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred CCccCEEECCCCCEEEEE-EccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 455678999999999885 2333 36889999887643 3332 223456889999999999888765 66777754
Q ss_pred CCcccceeecCCCcceEEee
Q psy8285 456 RDKKRKARQVGSGSSLEFAI 475 (507)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~ 475 (507)
..........+......|+|
T Consensus 408 ~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 408 RFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCeEECccCCCCcCCcccCC
Confidence 43333222334445555554
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=137.22 Aligned_cols=214 Identities=19% Similarity=0.300 Sum_probs=163.2
Q ss_pred EecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe-ecCccEEEEEe----eCCEEEEEecCCeEEE
Q psy8285 201 VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR-THMHQVIAMCW----NGNLLSCGTIGGNILH 275 (507)
Q Consensus 201 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~----~~~~l~~~~~dg~i~i 275 (507)
..+.| |.+.|.|++|+.+|.+|++| +.|-.+.|||.-..+++..+. +|...|.++.| +++.+++|..|..|++
T Consensus 44 ~eL~G-H~GCVN~LeWn~dG~lL~SG-SDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTG-HTGCVNCLEWNADGELLASG-SDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhcc-ccceecceeecCCCCEEeec-CCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34667 99999999999999999999 999999999999888877765 69999999999 6889999999999999
Q ss_pred EECCCC---------CcCceeeecCCCceEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCCCCe-------eeecCCCC
Q psy8285 276 YDVRTH---------SDYPTAITREGDVVCGLKWSPNG-RYLASGS-NNTVKIWDFRQLDAKRPQ-------VNNQCHLS 337 (507)
Q Consensus 276 ~d~~~~---------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~-------~~~~~~~~ 337 (507)
+|+... +........|...|..++-.|++ ..+.+++ ||+|+-||++......+- .......-
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 999852 23445566788889999999988 6677888 699999999975222211 11122234
Q ss_pred CeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC--------C----------eeeeee--------cC-----CCeEEE
Q psy8285 338 AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG--------K----------EKCHVK--------TD-----SQVTSI 386 (507)
Q Consensus 338 ~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--------~----------~~~~~~--------~~-----~~i~~~ 386 (507)
...++..+|...+++++|+. |-..++||.+.. . ++.-+. +. ..++-+
T Consensus 202 elk~ltisp~rp~~laVGgs--dpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGS--DPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred eeeeeeecCCCCceEEecCC--CchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 56799999999999999986 899999994321 1 111111 10 125678
Q ss_pred EECCCCCeEEEEeccCCCeEEEEeCCCccEEEEe
Q psy8285 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEEL 420 (507)
Q Consensus 387 ~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~ 420 (507)
.|+|+|..|++. -....|++||+..++....+
T Consensus 280 tfnpNGtElLvs--~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 280 TFNPNGTELLVS--WGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred EECCCCcEEEEe--eCCeEEEEEeecCCCCceee
Confidence 899999999883 33458999999887665443
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-12 Score=121.56 Aligned_cols=272 Identities=17% Similarity=0.224 Sum_probs=181.0
Q ss_pred EEEEcC----CeEEEEEC--CCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC---CCCcEEEEeCCCc--e--eEE
Q psy8285 179 LAVALD----TSVYTWNT--KTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT---CTEYIDLWHEQEE--R--LIQ 245 (507)
Q Consensus 179 ~~~~~~----~~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---~dg~i~iwd~~~~--~--~~~ 245 (507)
++++.. +.|++|++ ++++........ .......++++|++++|.++.. .+|.|..|++... + .+.
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~--~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTLTLVQTVA--EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEEEEEEEEE--ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCceEeeeec--CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 445544 78888887 556665444432 3456778999999999999833 3679999988764 3 333
Q ss_pred EEeecCccEEEEEe--eCCEEEEEe-cCCeEEEEECCCCCcCcee--ee-----------cCCCceEEEEEcCCCCEEEE
Q psy8285 246 KLRTHMHQVIAMCW--NGNLLSCGT-IGGNILHYDVRTHSDYPTA--IT-----------REGDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 246 ~~~~~~~~v~~~~~--~~~~l~~~~-~dg~i~i~d~~~~~~~~~~--~~-----------~~~~~v~~~~~~~~~~~l~~ 309 (507)
...........++. ++++|+++. .+|.|.++++......... .. .......++.|+|+++++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 33333444456666 688887776 5899999999874322211 11 12345789999999999998
Q ss_pred Ee-C-CcEEEEEcCCCCC-CCCeeee-cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC--CCC--eeeeeec--
Q psy8285 310 GS-N-NTVKIWDFRQLDA-KRPQVNN-QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM--NGK--EKCHVKT-- 379 (507)
Q Consensus 310 ~~-d-~~i~i~d~~~~~~-~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~--~~~~~~~-- 379 (507)
.. . ..|.+|++..... ......+ .......+.+.|+|++++++++.. .+++|.++++. +++ .+..+..
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e--~s~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE--LSNTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC--CCCcEEEEeecccCCceeEEEEeeecc
Confidence 87 3 8999999987521 1111112 234567889999999988888776 48999999987 442 2222221
Q ss_pred -----CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCC--Cc--cEEEEeeccccceeEEEECCCCCEEEEEe-CCCcEE
Q psy8285 380 -----DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP--RL--HLIEELKIHQERILSAVLSPDQTCVAAAS-ADETIS 449 (507)
Q Consensus 380 -----~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~--~~--~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~dg~i~ 449 (507)
......++++|||++|+++ ....+.|.+|++. ++ +.+..+......-+.++++|+|++|+++. .++.|.
T Consensus 239 ~~~~~~~~~~~i~ispdg~~lyvs-nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 239 EGFTGENAPAEIAISPDGRFLYVS-NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp TTSCSSSSEEEEEE-TTSSEEEEE-ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred ccccccCCceeEEEecCCCEEEEE-eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence 1257899999999999986 4567899999993 23 33444443344478999999999998877 457899
Q ss_pred EEecCC
Q psy8285 450 IWNCFP 455 (507)
Q Consensus 450 iw~~~~ 455 (507)
+|++..
T Consensus 318 vf~~d~ 323 (345)
T PF10282_consen 318 VFDIDP 323 (345)
T ss_dssp EEEEET
T ss_pred EEEEeC
Confidence 998853
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-14 Score=121.49 Aligned_cols=158 Identities=21% Similarity=0.391 Sum_probs=114.6
Q ss_pred EEEEEcCCCCEEEEEeC-----------CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEE
Q psy8285 296 CGLKWSPNGRYLASGSN-----------NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVR 364 (507)
Q Consensus 296 ~~~~~~~~~~~l~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~ 364 (507)
..+.|+|+|.+|+.-.+ +...+|.++..+.......+. ..++|.+++|+|++..++++.+ .+++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g-~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK-KEGPIHDVAWSPNGNEFAVIYG-SMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc-CCCceEEEEECcCCCEEEEEEc-cCCcccE
Confidence 45789999988765321 346666664432222222222 3457999999999988766653 3578999
Q ss_pred EEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEe-ccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEe
Q psy8285 365 LWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSH-GKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 365 i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 443 (507)
+||++ ++.+..+. ...+..+.|+|+|++|+++. +...|.|.+||.++.+.+.... |. .++.++|+|||++|++++
T Consensus 87 lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATAT 162 (194)
T ss_pred EEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEE
Confidence 99996 66666664 35678899999999999852 2345789999999988887775 33 478999999999999886
Q ss_pred C------CCcEEEEecCCCCccc
Q psy8285 444 A------DETISIWNCFPRDKKR 460 (507)
Q Consensus 444 ~------dg~i~iw~~~~~~~~~ 460 (507)
. |..++||++. ++.+.
T Consensus 163 t~~r~~~dng~~Iw~~~-G~~l~ 184 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQ-GRLLY 184 (194)
T ss_pred eccceeccccEEEEEec-CeEeE
Confidence 4 7889999986 44443
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=7e-17 Score=141.98 Aligned_cols=210 Identities=14% Similarity=0.194 Sum_probs=175.3
Q ss_pred cEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCee
Q psy8285 253 QVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQV 330 (507)
Q Consensus 253 ~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~ 330 (507)
..+.+.+ +|++++.|+..|.|..+|..+... ..-..-...|.++.|..+.+++|++-...++|||-.. ..+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L--~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~G----tElH 204 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL--HFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNG----TELH 204 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeeccccee--eeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCC----cEEe
Confidence 3456667 799999999999999999998762 2222345678999999999999999989999999764 4566
Q ss_pred eecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEE
Q psy8285 331 NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMW 409 (507)
Q Consensus 331 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~ 409 (507)
.+.. ...|..+.|-|.. +|+++++. .|.++.-|+.+|+.+..+... +.+..++-+|-+..+-+ |..+|+|.+|
T Consensus 205 Clk~-~~~v~rLeFLPyH-fLL~~~~~--~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~--GhsnGtVSlW 278 (545)
T KOG1272|consen 205 CLKR-HIRVARLEFLPYH-FLLVAASE--AGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHL--GHSNGTVSLW 278 (545)
T ss_pred ehhh-cCchhhhcccchh-heeeeccc--CCceEEEeechhhhhHHHHccCCccchhhcCCccceEEE--cCCCceEEec
Confidence 6553 3578999999976 77777764 899999999999999988776 78888999999888888 8899999999
Q ss_pred eCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecCCCcceEEe
Q psy8285 410 EYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFA 474 (507)
Q Consensus 410 d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 474 (507)
.-.+.+++..+..|.++|.++++.++|+|++|++.|..++|||++.-..+.......+...+.++
T Consensus 279 SP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~S 343 (545)
T KOG1272|consen 279 SPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLS 343 (545)
T ss_pred CCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccc
Confidence 99999999999999999999999999999999999999999999988776665555555554444
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.3e-16 Score=136.56 Aligned_cols=259 Identities=18% Similarity=0.213 Sum_probs=201.8
Q ss_pred eeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE
Q psy8285 170 GLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 170 ~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~ 247 (507)
.++++.+| ++.++..|.|..+|..+++...-+. -...|.++.|-.+.+++|++ ....++||| ..|..+..+
T Consensus 134 ~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~----v~Etv~Dv~~LHneq~~AVA--QK~y~yvYD-~~GtElHCl 206 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN----VMETVRDVTFLHNEQFFAVA--QKKYVYVYD-NNGTELHCL 206 (545)
T ss_pred eeeecCCccEEEecCCccceeeeecccceeeeeee----hhhhhhhhhhhcchHHHHhh--hhceEEEec-CCCcEEeeh
Confidence 47777777 8888999999999999988766555 45679999999999999887 788999999 456777776
Q ss_pred eecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC
Q psy8285 248 RTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLD 324 (507)
Q Consensus 248 ~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~ 324 (507)
..| .+|..+.| ..-+|++++..|.+.--|+.+++ ....+....+.+..++-+|-+..+-.|. +|+|.+|.....
T Consensus 207 k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk- 283 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK-LVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK- 283 (545)
T ss_pred hhc-CchhhhcccchhheeeecccCCceEEEeechhh-hhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc-
Confidence 644 46778888 56688899999999999999987 5666666677888899999888888888 599999999887
Q ss_pred CCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCC
Q psy8285 325 AKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDC 404 (507)
Q Consensus 325 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~ 404 (507)
.++..+..|.++|.++++.++|.+++++|- |..++|||++....+.++........+++|..|. ||+ +...
T Consensus 284 --ePLvKiLcH~g~V~siAv~~~G~YMaTtG~---Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkgl-LA~---~~G~ 354 (545)
T KOG1272|consen 284 --EPLVKILCHRGPVSSIAVDRGGRYMATTGL---DRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGL-LAL---SYGD 354 (545)
T ss_pred --chHHHHHhcCCCcceEEECCCCcEEeeccc---ccceeEeeeccccccceeecCCCccccccccccc-eee---ecCC
Confidence 888888899999999999999977777665 9999999999998888877777788899987664 333 2345
Q ss_pred eEEEEeCC-Cc--cEEEEeecc--ccceeEEEECCCCCEEEEEeCCCc
Q psy8285 405 SLKMWEYP-RL--HLIEELKIH--QERILSAVLSPDQTCVAAASADET 447 (507)
Q Consensus 405 ~i~v~d~~-~~--~~~~~~~~~--~~~i~~~~~s~~~~~l~s~~~dg~ 447 (507)
.|.||.-. .+ ..-..+-.| .+.|..+.|.|-...|-.|-.-|.
T Consensus 355 ~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 355 HVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred eeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 79999532 21 111112222 357999999996655555544443
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.1e-15 Score=128.29 Aligned_cols=191 Identities=16% Similarity=0.221 Sum_probs=136.7
Q ss_pred eeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 169 SGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 169 ~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
.+++++.++ +.+++.||.+++|+..+.... ..... |...|.++.|+|||+.|++. +.| ..+||+.+++..+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~--l~e~~-~~~eV~DL~FS~dgk~lasi-g~d-~~~VW~~~~g~~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTI--LEEIA-HHAEVKDLDFSPDGKFLASI-GAD-SARVWSVNTGAALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhh--hhhHh-hcCccccceeCCCCcEEEEe-cCC-ceEEEEeccCchhhh
Confidence 468999986 556679999999996554432 22223 88999999999999999999 778 999999999976665
Q ss_pred Eee--cCccEEEEEe--eC---CE-E-EEEecCCeEEEEECCCCCc----CceeeecCCCceEEEEEcCCCCEEEEEe-C
Q psy8285 247 LRT--HMHQVIAMCW--NG---NL-L-SCGTIGGNILHYDVRTHSD----YPTAITREGDVVCGLKWSPNGRYLASGS-N 312 (507)
Q Consensus 247 ~~~--~~~~v~~~~~--~~---~~-l-~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d 312 (507)
... .......+.| ++ .+ + +....-+.|+.|++..... ...........|.+++.++||++++.|+ |
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d 302 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD 302 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence 542 2334455666 33 22 2 2223345566666554322 2222333345799999999999999999 7
Q ss_pred CcEEEEEcCCCCCCCCee-eecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC
Q psy8285 313 NTVKIWDFRQLDAKRPQV-NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN 370 (507)
Q Consensus 313 ~~i~i~d~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 370 (507)
|.|-|++..+. +.++ ..+.|..-|+.+.|+|+.+++..+.+ +.+..+..+.-
T Consensus 303 GsVai~~~~~l---q~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs---~~~~~v~~l~v 355 (398)
T KOG0771|consen 303 GSVAIYDAKSL---QRLQYVKEAHLGFVTGLTFSPDSRYLASVSS---DNEAAVTKLAV 355 (398)
T ss_pred CcEEEEEecee---eeeEeehhhheeeeeeEEEcCCcCccccccc---CCceeEEEEee
Confidence 99999999876 3333 34569999999999999977777555 77777776643
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-13 Score=125.96 Aligned_cols=284 Identities=12% Similarity=0.084 Sum_probs=184.4
Q ss_pred EcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--
Q psy8285 182 ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW-- 259 (507)
Q Consensus 182 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-- 259 (507)
..++.|.+.|..+.+....+.. ....-..+.|+|||++++++ +.||.|.++|+.+++.+.++..... ...+++
T Consensus 13 ~~~~~v~viD~~t~~~~~~i~~---~~~~h~~~~~s~Dgr~~yv~-~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~ 87 (369)
T PF02239_consen 13 RGSGSVAVIDGATNKVVARIPT---GGAPHAGLKFSPDGRYLYVA-NRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSP 87 (369)
T ss_dssp GGGTEEEEEETTT-SEEEEEE----STTEEEEEE-TT-SSEEEEE-ETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--
T ss_pred cCCCEEEEEECCCCeEEEEEcC---CCCceeEEEecCCCCEEEEE-cCCCeEEEEECCcccEEEEEecCCC-cceEEEcC
Confidence 4789999999999888776664 22334557899999999999 8899999999999999998876444 355666
Q ss_pred eCCEEEEEe-cCCeEEEEECCCCCcCceeeec-------CCCceEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCCCe
Q psy8285 260 NGNLLSCGT-IGGNILHYDVRTHSDYPTAITR-------EGDVVCGLKWSPNGRYLASGS-N-NTVKIWDFRQLDAKRPQ 329 (507)
Q Consensus 260 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~ 329 (507)
||++++++. ..+.+.++|.++.+ +...+.. ....+..+..+|....++..- | +.|.+.|.... ..+
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle-~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~---~~~ 163 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLE-PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP---KNL 163 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS---SCE
T ss_pred CCCEEEEEecCCCceeEecccccc-ceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc---ccc
Confidence 899888765 68999999999876 3333322 234677888888888665554 6 99999998765 333
Q ss_pred e-eecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-----CCeEEE-------EE--CCCCCe
Q psy8285 330 V-NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-----SQVTSI-------LW--SEQYRE 394 (507)
Q Consensus 330 ~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~i~~~-------~~--s~~~~~ 394 (507)
. .............|+|++++++++..+ +..|-++|..+++.+..+... .+...+ .| ...+..
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~--sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLVAANG--SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEEEEGG--GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred ceeeecccccccccccCcccceeeecccc--cceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 2 233345567789999999888887665 789999999998877765432 222222 12 112223
Q ss_pred EEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEE----eCCCcEEEEecCCCCcccceeecCC--C
Q psy8285 395 LVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAA----SADETISIWNCFPRDKKRKARQVGS--G 468 (507)
Q Consensus 395 l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~----~~dg~i~iw~~~~~~~~~~~~~~~~--~ 468 (507)
.+.. -....+.+||..+.+.++++.....+ .-+.-+|+++++.+. ....+|.++|..+.+....+..... .
T Consensus 242 ~~~~--ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~ 318 (369)
T PF02239_consen 242 AIPL--IGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRV 318 (369)
T ss_dssp EEEE--EE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--E
T ss_pred eccc--ccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcE
Confidence 2221 12335667888999999999877666 778889999999887 4458999999999877666554433 5
Q ss_pred cceEEeeccCc
Q psy8285 469 SSLEFAILKQP 479 (507)
Q Consensus 469 ~~~~~~~~~~~ 479 (507)
..++|..+...
T Consensus 319 ~h~ef~~dG~~ 329 (369)
T PF02239_consen 319 VHMEFNPDGKE 329 (369)
T ss_dssp EEEEE-TTSSE
T ss_pred eccEECCCCCE
Confidence 56666666543
|
... |
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.2e-14 Score=136.58 Aligned_cols=293 Identities=19% Similarity=0.264 Sum_probs=194.8
Q ss_pred chhhhcCCCcccccceeeeeeCCCC---EEEEEcCCeEEEEECCCCc-----eeEEEecCCCCCCceEEEEEccCCCeEE
Q psy8285 153 PERILEAPSIINDFYTSGLDWGYHD---TLAVALDTSVYTWNTKTNK-----TQLLVEYPTYDNAYISCVAWKPRTTDLA 224 (507)
Q Consensus 153 ~~~~~~~~~~~~~~~i~~~~~s~~~---~~~~~~~~~i~iw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 224 (507)
|..++.++-..+...++.++-+++. +++++.||+|++|+...-. .....+..- ....+.++.+.+.+..+|
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCCeEE
Confidence 3444444444444445566666644 7788899999999987522 122222221 467899999999999999
Q ss_pred EEeCCCCcEEEEeCCCc--ee-----EEEEee-cCccEEEE-Ee---eCC-EEEEEecCCeEEEEECCCCCcCc-eeeec
Q psy8285 225 VTNTCTEYIDLWHEQEE--RL-----IQKLRT-HMHQVIAM-CW---NGN-LLSCGTIGGNILHYDVRTHSDYP-TAITR 290 (507)
Q Consensus 225 ~~~~~dg~i~iwd~~~~--~~-----~~~~~~-~~~~v~~~-~~---~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~ 290 (507)
++ +.||.|++.++... +. ...... ..+.+.++ +| .+. .++.+...+.|..||++...... .....
T Consensus 1115 v~-t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~ 1193 (1431)
T KOG1240|consen 1115 VS-TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQL 1193 (1431)
T ss_pred EE-cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCc
Confidence 99 99999999998752 11 111111 22333333 33 344 88889999999999999764221 12233
Q ss_pred CCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeeeec-CCCCCeeEEEEccCCC--cEEEEEccCCCCeEEEE
Q psy8285 291 EGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQ-CHLSAVKAIAWCPWEP--TLLATGGGICDQTVRLW 366 (507)
Q Consensus 291 ~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~~~~~~~~~d~~i~i~ 366 (507)
..+.|++++.+|.+++++.|+. |.+.+||++-+ .++..+. ++..+++.+..+|-.+ ...++++.+..+.|.+|
T Consensus 1194 ~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred cccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 4578999999999999999995 99999999976 5554443 3456788888877544 44444443358899999
Q ss_pred eCCCCCeeeeeecCC--------------------CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEE---------
Q psy8285 367 NSMNGKEKCHVKTDS--------------------QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLI--------- 417 (507)
Q Consensus 367 d~~~~~~~~~~~~~~--------------------~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~--------- 417 (507)
++.+|.+...+-... ......+...+..+++ |+.|..|+.||....+..
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~lt--ggsd~kIR~wD~~~p~~ss~~~~~~s~ 1348 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLT--GGSDMKIRKWDPTRPEISSYAVPGPST 1348 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeee--cCCccceeeccCCCcccccccccCccc
Confidence 999987655543220 1123334444556666 788999999997432110
Q ss_pred --------------------E-------------------Ee--------eccccceeEEEECCC-CCEEEEEeCCCcEE
Q psy8285 418 --------------------E-------------------EL--------KIHQERILSAVLSPD-QTCVAAASADETIS 449 (507)
Q Consensus 418 --------------------~-------------------~~--------~~~~~~i~~~~~s~~-~~~l~s~~~dg~i~ 449 (507)
. .+ ..|..+|+++++-.. ..+|++++.||.|+
T Consensus 1349 ~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~Ik 1428 (1431)
T KOG1240|consen 1349 SYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIK 1428 (1431)
T ss_pred cccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeee
Confidence 0 00 136667888877654 45889999999999
Q ss_pred EEe
Q psy8285 450 IWN 452 (507)
Q Consensus 450 iw~ 452 (507)
||.
T Consensus 1429 iWk 1431 (1431)
T KOG1240|consen 1429 IWK 1431 (1431)
T ss_pred ecC
Confidence 995
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-13 Score=132.22 Aligned_cols=234 Identities=15% Similarity=0.118 Sum_probs=145.9
Q ss_pred CcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecC---CeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC
Q psy8285 231 EYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIG---GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR 305 (507)
Q Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 305 (507)
..|.++|.. +.....+..+...+.+.+| |++.|+..+.+ ..|++||+.+++ ...+......+...+|+|||+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~--~~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR--RRVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC--EEEeecCCCCccceEECCCCC
Confidence 357777764 4444555567778888888 78888877643 359999998775 233444445567899999999
Q ss_pred EEEEE-e-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEE--eCCCCCeeeeeecCC
Q psy8285 306 YLASG-S-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLW--NSMNGKEKCHVKTDS 381 (507)
Q Consensus 306 ~l~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~--d~~~~~~~~~~~~~~ 381 (507)
.|+.. + ++...||.++... .....+..+........|+|||+.+++++.. ++...+| ++.+++.........
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~--~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~--~g~~~Iy~~~~~~g~~~~lt~~g~ 328 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADG--SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDR--GGAPQIYRMPASGGAAQRVTFTGS 328 (427)
T ss_pred EEEEEEccCCCceEEEEECCC--CCcEECCCCCCCCcCeEEcCCCCEEEEEecC--CCCcEEEEEECCCCceEEEecCCC
Confidence 88754 4 4665555543210 2344454455566778999999888776543 4444555 555554333222223
Q ss_pred CeEEEEECCCCCeEEEEeccCCC--eEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCC-c--EEEEecCCC
Q psy8285 382 QVTSILWSEQYRELVTSHGKQDC--SLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE-T--ISIWNCFPR 456 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg-~--i~iw~~~~~ 456 (507)
.....+|+|+|++|+.++ ..++ .|.+||+.+++... +.. ........|+|||+.|+.++.++ . +.+.++. +
T Consensus 329 ~~~~~~~SpDG~~Ia~~s-~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g 404 (427)
T PRK02889 329 YNTSPRISPDGKLLAYIS-RVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G 404 (427)
T ss_pred CcCceEECCCCCEEEEEE-ccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C
Confidence 345689999999998742 2222 69999998876543 332 23346789999999988777553 3 4444553 3
Q ss_pred Cccccee-ecCCCcceEEee
Q psy8285 457 DKKRKAR-QVGSGSSLEFAI 475 (507)
Q Consensus 457 ~~~~~~~-~~~~~~~~~~~~ 475 (507)
.....+. ..+......|+|
T Consensus 405 ~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 405 RIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred CceEEeecCCCCCCCCccCC
Confidence 3332222 234444555544
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-15 Score=131.20 Aligned_cols=287 Identities=13% Similarity=0.180 Sum_probs=213.0
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCC--CeEEEEeCCCCcEEEEeCCC
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRT--TDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~dg~i~iwd~~~ 240 (507)
.-+++.+.|+..+ +++++.|..|.+||...++.... +.++|...|....|-|.. +-++++ +.||.+++=.+..
T Consensus 142 ~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~-s~dgqvr~s~i~~ 218 (559)
T KOG1334|consen 142 KGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTS-SRDGQVRVSEILE 218 (559)
T ss_pred CCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceec-cccCceeeeeecc
Confidence 4568889999877 56667899999999988876533 333388899988898853 567777 8999999887654
Q ss_pred cee---EEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcC--ceeeecCCC---ceEEEEEcCCCC-EEE
Q psy8285 241 ERL---IQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDY--PTAITREGD---VVCGLKWSPNGR-YLA 308 (507)
Q Consensus 241 ~~~---~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~---~v~~~~~~~~~~-~l~ 308 (507)
... ...+..|.++|..++. +...|.+++.|+.+.-+|++..... ......+.. ....++..|... .++
T Consensus 219 t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~fa 298 (559)
T KOG1334|consen 219 TGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFA 298 (559)
T ss_pred ccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccc
Confidence 322 3345569999988888 5788999999999999999876521 112222333 467888888665 677
Q ss_pred EEe-CCcEEEEEcCCCCCC---CCeeeec------CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC------
Q psy8285 309 SGS-NNTVKIWDFRQLDAK---RPQVNNQ------CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK------ 372 (507)
Q Consensus 309 ~~~-d~~i~i~d~~~~~~~---~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------ 372 (507)
+++ |..+++||.+..... ..+..+. ...-.|++++|+.++..++++-. |-.|+++.-..+.
T Consensus 299 VgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn---De~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 299 VGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN---DEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred cCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec---ccceEEeccccccCCCCCC
Confidence 777 799999998764221 1122221 23346999999988889999887 8999999543221
Q ss_pred ------eeee-eecC---CCeEEEEE-CCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEE
Q psy8285 373 ------EKCH-VKTD---SQVTSILW-SEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAA 441 (507)
Q Consensus 373 ------~~~~-~~~~---~~i~~~~~-s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 441 (507)
.+.. +++| ..|..+-| -|...|+++ |++-|.|.||+-.+++.+..+.+-..-|+|+.=+|--..||+
T Consensus 376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvS--GSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVS--GSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLAS 453 (559)
T ss_pred CcchhhccchhhcccccccccceeeeccCccceEEe--cCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhc
Confidence 1122 4444 24666654 578888888 999999999999999999988887779999999999999999
Q ss_pred EeCCCcEEEEecCCCCcc
Q psy8285 442 ASADETISIWNCFPRDKK 459 (507)
Q Consensus 442 ~~~dg~i~iw~~~~~~~~ 459 (507)
++-|..|+||...+.+..
T Consensus 454 SGid~DVKIWTP~~~er~ 471 (559)
T KOG1334|consen 454 SGIDHDVKIWTPLTAERA 471 (559)
T ss_pred cCCccceeeecCCccccc
Confidence 999999999998655443
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.6e-14 Score=125.76 Aligned_cols=276 Identities=14% Similarity=0.079 Sum_probs=193.5
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCc
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSD 283 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~ 283 (507)
+....+.|..+|||+|++++|...-.|++||+.+..+... ......+..+.. |-..++.-..|.+|.+...-. ..
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFE-RhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G-~h 127 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFE-RHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG-RH 127 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeee-ecccccceeEEEeccchhhheEeecCceeeehhhcC-ee
Confidence 6677889999999999998878999999999987543222 122233433333 334455555677666543221 11
Q ss_pred CceeeecCCCceEEEEEcC-CCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCe
Q psy8285 284 YPTAITREGDVVCGLKWSP-NGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQT 362 (507)
Q Consensus 284 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~ 362 (507)
....+ ...-..++++. ...++++|+...|+-++++.+ +-+..+....+.++++..++.. .|+++|+. +|.
T Consensus 128 y~~RI---P~~GRDm~y~~~scDly~~gsg~evYRlNLEqG---rfL~P~~~~~~~lN~v~in~~h-gLla~Gt~--~g~ 198 (703)
T KOG2321|consen 128 YRTRI---PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG---RFLNPFETDSGELNVVSINEEH-GLLACGTE--DGV 198 (703)
T ss_pred eeeec---CcCCccccccCCCccEEEeecCcceEEEEcccc---ccccccccccccceeeeecCcc-ceEEeccc--Cce
Confidence 11111 11223455553 444566666688999999998 6666777677899999999976 68888775 999
Q ss_pred EEEEeCCCCCeeeeeecCC------------CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee-ccccceeE
Q psy8285 363 VRLWNSMNGKEKCHVKTDS------------QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK-IHQERILS 429 (507)
Q Consensus 363 i~i~d~~~~~~~~~~~~~~------------~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~ 429 (507)
|.+||.+....+..+.... .|+++.|+.+|-.+++ |..+|.+.|||+++.+++..-. +..-+|..
T Consensus 199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aV--Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~ 276 (703)
T KOG2321|consen 199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAV--GTSTGSVLIYDLRASKPLLVKDHGYELPIKK 276 (703)
T ss_pred EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEe--eccCCcEEEEEcccCCceeecccCCccceee
Confidence 9999999887766654322 4999999999999999 8999999999999988876543 22457889
Q ss_pred EEECCC--CCEEEEEeCCCcEEEEecCCCCcccceeecCCCcceEEeeccCccccceeeeecccccccceeEEeee
Q psy8285 430 AVLSPD--QTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAILKQPVSLTALLRSRAVEKQQHAIAYTVF 503 (507)
Q Consensus 430 ~~~s~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 503 (507)
+.|.+. +..+++. +...++|||-.++++............+.+.+.++- .-.|.+...+..+|.+.
T Consensus 277 l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm-------~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 277 LDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGM-------FFTANESSKMHTYYIPS 344 (703)
T ss_pred ecccccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCce-------EEEecCCCcceeEEccc
Confidence 999775 3445544 346899999999999988877777766666655443 35566666677677665
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.5e-14 Score=121.04 Aligned_cols=257 Identities=14% Similarity=0.131 Sum_probs=182.7
Q ss_pred CCCceEEEEEccCCC-eEEEEeCCCCcEEEEeCCCceeEEE------EeecCccEEEEEeeCCEEEEEecCCeEEEEECC
Q psy8285 207 DNAYISCVAWKPRTT-DLAVTNTCTEYIDLWHEQEERLIQK------LRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVR 279 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~-~l~~~~~~dg~i~iwd~~~~~~~~~------~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~ 279 (507)
....++.++|.-+++ .++.+.+.+..+..+.+........ ......+|..+..-+..|++|-.+|.+.+|...
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEecc
Confidence 345677777775553 2333314666777777666554433 334566777777766677788889999999988
Q ss_pred CCC---cCceeeecCCCceEEEEEcCCCCE-EEEEe-C--CcEEEEEcCCCCCCCCeeeecC---------CCCCeeEEE
Q psy8285 280 THS---DYPTAITREGDVVCGLKWSPNGRY-LASGS-N--NTVKIWDFRQLDAKRPQVNNQC---------HLSAVKAIA 343 (507)
Q Consensus 280 ~~~---~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~-d--~~i~i~d~~~~~~~~~~~~~~~---------~~~~v~~~~ 343 (507)
.+. .+...+..+ ..+..+.-++.... +++|+ . ..+.+||+++. +++..-.. -.-.++++.
T Consensus 134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~---~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS---KQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccc---eeeeeccCCCCccccceeeeeeccce
Confidence 543 122233322 45566666665554 55577 4 88999999875 33322221 122467888
Q ss_pred EccCC-CcEEEEEccCCCCeEEEEeCCCC-CeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEE-
Q psy8285 344 WCPWE-PTLLATGGGICDQTVRLWNSMNG-KEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEE- 419 (507)
Q Consensus 344 ~~~~~-~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~- 419 (507)
|-|.. .+.++++.. -+.+++||.+.+ +++..+... ..++++...|+++++++ |..-+.+..||++.++.+..
T Consensus 210 Fl~g~~~~~fat~T~--~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~--gn~~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 210 FLEGSPNYKFATITR--YHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYT--GNTKGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred ecCCCCCceEEEEec--ceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEE--ecccchhheecccCceeeccc
Confidence 88751 355666654 899999999876 466677655 78999999999999999 88899999999999998877
Q ss_pred eeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecCCCcce
Q psy8285 420 LKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSL 471 (507)
Q Consensus 420 ~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 471 (507)
+++-.+.|+++..+|.+++|++++-|..|||+|+.+.+.+.+.=.......+
T Consensus 286 ~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~i 337 (412)
T KOG3881|consen 286 LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFI 337 (412)
T ss_pred cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEE
Confidence 8888999999999999999999999999999999997766554333333333
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.1e-14 Score=121.20 Aligned_cols=210 Identities=14% Similarity=0.184 Sum_probs=163.7
Q ss_pred CCEEEEEcCCeEEEEECCCCc--eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC--CcEEEEeCCCceeEEEEeec-
Q psy8285 176 HDTLAVALDTSVYTWNTKTNK--TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT--EYIDLWHEQEERLIQKLRTH- 250 (507)
Q Consensus 176 ~~~~~~~~~~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d--g~i~iwd~~~~~~~~~~~~~- 250 (507)
.-++++-.+|.+.+|..+.+. -.+...+. ....+..+.-++..+++++.|+.. ..+.+||+++.+.+..-+.-
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss~l~~la--~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp 193 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSSKLIKLA--TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP 193 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccccceeee--cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC
Confidence 337788899999999998443 11222222 235678888888888888865888 89999999988555443321
Q ss_pred ------C--ccEEEEEe--e--CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC-CcEEE
Q psy8285 251 ------M--HQVIAMCW--N--GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKI 317 (507)
Q Consensus 251 ------~--~~v~~~~~--~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i 317 (507)
. -.++++.| . ...|++++.-+.+++||.+.++.+...+.....+++++...|+++++++|.. +.+..
T Consensus 194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~ 273 (412)
T KOG3881|consen 194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAK 273 (412)
T ss_pred CccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhhe
Confidence 1 12456677 2 6789999999999999999988888888888899999999999999999995 99999
Q ss_pred EEcCCCCCCCCeee-ecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCC
Q psy8285 318 WDFRQLDAKRPQVN-NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYR 393 (507)
Q Consensus 318 ~d~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~ 393 (507)
||++.+ +.... +.+..+.++++..+|.++ ++++++ .|+.+||+|+.+.+++...-....++++.+.++-+
T Consensus 274 FD~r~~---kl~g~~~kg~tGsirsih~hp~~~-~las~G--LDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~n 344 (412)
T KOG3881|consen 274 FDLRGG---KLLGCGLKGITGSIRSIHCHPTHP-VLASCG--LDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDVN 344 (412)
T ss_pred ecccCc---eeeccccCCccCCcceEEEcCCCc-eEEeec--cceeEEEeecccchhhhhhhhhccccEEEecCCcc
Confidence 999987 54444 777889999999999874 555555 39999999999988888777777788888766543
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.6e-15 Score=132.42 Aligned_cols=216 Identities=18% Similarity=0.248 Sum_probs=161.0
Q ss_pred eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC--CCCEEEEEe-CCcEEE
Q psy8285 243 LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP--NGRYLASGS-NNTVKI 317 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~-d~~i~i 317 (507)
..+.+.+|.+.|.++.| +|.+|++|+.|-.+.|||.-..+.....-.+|...|.+++|-| +.+++++|. |..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 34568899999999999 7999999999999999999877656667789999999999999 456778877 799999
Q ss_pred EEcCCCC-------CCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee-ee-------ecC--
Q psy8285 318 WDFRQLD-------AKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC-HV-------KTD-- 380 (507)
Q Consensus 318 ~d~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-~~-------~~~-- 380 (507)
+|+...+ .......+..|...|..++-.|++++.+.++++ ||+|+-+|++...... .. ...
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasE--DGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASE--DGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecC--CcceeeecccCCccCCccccccHHHHHhchh
Confidence 9998521 224555566789999999999999999988886 9999999998742111 00 011
Q ss_pred -CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC--------cc----------EEEEe-eccc-----------cceeE
Q psy8285 381 -SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR--------LH----------LIEEL-KIHQ-----------ERILS 429 (507)
Q Consensus 381 -~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~--------~~----------~~~~~-~~~~-----------~~i~~ 429 (507)
-...++.++|...++++. |+.|--.++||.+. +. ++.-+ .+|- ..++-
T Consensus 200 lielk~ltisp~rp~~laV-GgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAV-GGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hheeeeeeecCCCCceEEe-cCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 356889999988766555 78899999999431 11 11111 1221 12566
Q ss_pred EEECCCCCEEEEEeCCCcEEEEecCCCCcccc
Q psy8285 430 AVLSPDQTCVAAASADETISIWNCFPRDKKRK 461 (507)
Q Consensus 430 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 461 (507)
+.|+|+|.-|+..-....|+++|+..++....
T Consensus 279 vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred EEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 88999997665554455899999987765543
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-13 Score=132.44 Aligned_cols=247 Identities=14% Similarity=0.164 Sum_probs=168.1
Q ss_pred CCCceEEEEEccCC-CeEEEEeCCCCcEEEEeCCCc-------eeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEE
Q psy8285 207 DNAYISCVAWKPRT-TDLAVTNTCTEYIDLWHEQEE-------RLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHY 276 (507)
Q Consensus 207 ~~~~v~~~~~~~~~-~~l~~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~ 276 (507)
|...+..++.++.. .+++++ +.||+|++||...- +...++.....++.++.. +++.+|+++.||.|.+.
T Consensus 1047 hs~~v~k~a~s~~~~s~Fvsg-S~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSG-SDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVL 1125 (1431)
T ss_pred ccccccceeecCCCCceEEEe-cCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEE
Confidence 88888898888776 777777 99999999998642 122233334556666666 89999999999999999
Q ss_pred ECCCCCcCc------eeeec--CCCceEEEEEcC-CCC-EEEEEeC-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEc
Q psy8285 277 DVRTHSDYP------TAITR--EGDVVCGLKWSP-NGR-YLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWC 345 (507)
Q Consensus 277 d~~~~~~~~------~~~~~--~~~~v~~~~~~~-~~~-~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~ 345 (507)
+++...... ..... ....+..-+|.. .+. .++.+.+ +.|..||++.......++. ....+.|++++.+
T Consensus 1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~-~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN-QLRHGLVTSIVID 1204 (1431)
T ss_pred EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc-CccccceeEEEec
Confidence 988632111 11111 122233334443 233 5666776 9999999998622222222 2345789999999
Q ss_pred cCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC--CCeEEEEECCCC---CeEEEEecc-CCCeEEEEeCCCccEEEE
Q psy8285 346 PWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD--SQVTSILWSEQY---RELVTSHGK-QDCSLKMWEYPRLHLIEE 419 (507)
Q Consensus 346 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~s~~~---~~l~~~~g~-~d~~i~v~d~~~~~~~~~ 419 (507)
|.+. .++.|.. .|.+.+||++-+.++..+.++ .++..+..+|-. ...+++ ++ ..+.|.+|++.++.....
T Consensus 1205 p~~~-WlviGts--~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~-~~~~~nevs~wn~~~g~~~~v 1280 (1431)
T KOG1240|consen 1205 PWCN-WLVIGTS--RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSA-GSSSNNEVSTWNMETGLRQTV 1280 (1431)
T ss_pred CCce-EEEEecC--CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEe-cccCCCceeeeecccCcceEE
Confidence 9885 6666654 899999999999998887765 567777776644 345553 45 688999999998866655
Q ss_pred eecc-c------------------cceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 420 LKIH-Q------------------ERILSAVLSPDQTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 420 ~~~~-~------------------~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
+... . -......+...+..+.+|+.|..|+.||....+..
T Consensus 1281 l~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1281 LWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred EEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 5322 0 01122233334568899999999999999877665
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-13 Score=114.45 Aligned_cols=141 Identities=19% Similarity=0.337 Sum_probs=104.1
Q ss_pred eEEEEECCCCCcCceeeec-CCCceEEEEEcCCCCEEEEEe---CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccC
Q psy8285 272 NILHYDVRTHSDYPTAITR-EGDVVCGLKWSPNGRYLASGS---NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW 347 (507)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 347 (507)
...+|.++........+.- ..++|.+++|+|+|+.+++.. +..|.+||++. +.+..+ +...+..+.|+|+
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~----~~i~~~--~~~~~n~i~wsP~ 111 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG----KKIFSF--GTQPRNTISWSPD 111 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc----cEeEee--cCCCceEEEECCC
Confidence 4555555444333443432 345799999999999876653 38999999973 566665 3567789999999
Q ss_pred CCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEecc----CCCeEEEEeCCCccEEEEe
Q psy8285 348 EPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGK----QDCSLKMWEYPRLHLIEEL 420 (507)
Q Consensus 348 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~----~d~~i~v~d~~~~~~~~~~ 420 (507)
|+.+++++.+...|.|.+||.++.+.+....+. .++.++|+|+|+++++++.. .|+.++||+.. |+++...
T Consensus 112 G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 112 GRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 988887776555789999999988888776654 57899999999999996322 47889999974 6665543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-12 Score=123.22 Aligned_cols=244 Identities=11% Similarity=0.056 Sum_probs=153.1
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEE--EEeCCCC--cEEEEeCCCceeEEEEeecCccEEEEEe-
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLA--VTNTCTE--YIDLWHEQEERLIQKLRTHMHQVIAMCW- 259 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~- 259 (507)
..|++.|...++..++.. ....+....|+|||+.++ ..+..+| .|.+.++.+++.... ....+......|
T Consensus 165 ~~l~~~d~dG~~~~~lt~----~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wS 239 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQ----EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFS 239 (428)
T ss_pred ceEEEEcCCCCCceEccc----CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEEC
Confidence 478888887776655443 445667889999997632 2314444 577778887754333 223333445566
Q ss_pred -eCCEEEEEec-CC----eEEEEECCCC--CcCceeeecCCCceEEEEEcCCCCEEEEEeC--CcEEEE--EcCCCCCCC
Q psy8285 260 -NGNLLSCGTI-GG----NILHYDVRTH--SDYPTAITREGDVVCGLKWSPNGRYLASGSN--NTVKIW--DFRQLDAKR 327 (507)
Q Consensus 260 -~~~~l~~~~~-dg----~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--~~i~i~--d~~~~~~~~ 327 (507)
||+.|+..+. +| .+..|++..+ .................+|+|||+.|+..++ +...+| ++.... .
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~ 317 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--Q 317 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--c
Confidence 7888877653 22 3344676643 1122222222234467899999998887773 655555 443211 2
Q ss_pred CeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEec-cCCCeE
Q psy8285 328 PQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHG-KQDCSL 406 (507)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g-~~d~~i 406 (507)
....+..+...+....|+|||+.++.+........|.+||+.+++..........+....|+|||+.|+.... .....|
T Consensus 318 ~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 318 SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred ceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 2333444455677899999998888776532235799999998876554433346778999999999886421 123578
Q ss_pred EEEeCCCccEEEEeeccccceeEEEECCCC
Q psy8285 407 KMWEYPRLHLIEELKIHQERILSAVLSPDQ 436 (507)
Q Consensus 407 ~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~ 436 (507)
+++|+..++...... ..+.+...+|+|-.
T Consensus 398 ~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEeec-CCCcccCceecCCC
Confidence 999998776544333 45567788898753
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.3e-13 Score=126.06 Aligned_cols=235 Identities=14% Similarity=0.084 Sum_probs=152.1
Q ss_pred eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCC--cEEEEeCCCceeEEEEeecCccEEEEEe--eC
Q psy8285 186 SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTE--YIDLWHEQEERLIQKLRTHMHQVIAMCW--NG 261 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~ 261 (507)
.|.++|....+...+.. ....+.+..|+|||+.|+.....++ .|.+||+.+++... +...........| |+
T Consensus 199 ~l~i~d~dG~~~~~l~~----~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG 273 (448)
T PRK04792 199 QLMIADYDGYNEQMLLR----SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDG 273 (448)
T ss_pred EEEEEeCCCCCceEeec----CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCC
Confidence 67778876655444433 5678899999999999988733333 58888988876433 2222223335666 78
Q ss_pred CEEEE-EecCCe--EEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC--C--cEEEEEcCCCCCCCCeeeecC
Q psy8285 262 NLLSC-GTIGGN--ILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN--N--TVKIWDFRQLDAKRPQVNNQC 334 (507)
Q Consensus 262 ~~l~~-~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--~--~i~i~d~~~~~~~~~~~~~~~ 334 (507)
+.|+. .+.++. |+++|+.+++ ...+..+.......+|+||++.|+..++ + .|+++|+.++ + ...+..
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g---~-~~~Lt~ 347 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG---K-VSRLTF 347 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC---C-EEEEec
Confidence 87765 455664 7788887754 3444445556677899999999887763 3 4666677655 2 222222
Q ss_pred CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCC--eEEEEeCC
Q psy8285 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDC--SLKMWEYP 412 (507)
Q Consensus 335 ~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~--~i~v~d~~ 412 (507)
.........|+|+|+.++++........|.++|+.+++... +..........|+|+|+.|+.++ ..++ .+++++.
T Consensus 348 ~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~-~~~g~~~l~~~~~- 424 (448)
T PRK04792 348 EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYST-TYQGKQVLAAVSI- 424 (448)
T ss_pred CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEE-ecCCceEEEEEEC-
Confidence 22334467999999888776653112356778888876533 22222223558999999998853 3344 4777786
Q ss_pred CccEEEEeeccccceeEEEECC
Q psy8285 413 RLHLIEELKIHQERILSAVLSP 434 (507)
Q Consensus 413 ~~~~~~~~~~~~~~i~~~~~s~ 434 (507)
++.....+..+.+.+...+|+|
T Consensus 425 ~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 425 DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCCceEECcCCCCCcCCCccCC
Confidence 5666666766667778888987
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.6e-11 Score=102.74 Aligned_cols=270 Identities=14% Similarity=0.168 Sum_probs=180.8
Q ss_pred CCeEEEEECCC--CceeEEEecCCCCCCceEEEEEccCCCeEEEEeCC--CCcEEEEeCCC--ceeEE--EEeecCccEE
Q psy8285 184 DTSVYTWNTKT--NKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTC--TEYIDLWHEQE--ERLIQ--KLRTHMHQVI 255 (507)
Q Consensus 184 ~~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--dg~i~iwd~~~--~~~~~--~~~~~~~~v~ 255 (507)
+..|++|++.+ ++........ ..+.++-|+|+|+++.|.++... +|.|.-|.+.. |++.. .......+..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~--~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~ 92 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVA--ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC 92 (346)
T ss_pred CCceEEEEEeCcccccchhhhcc--ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe
Confidence 77899999874 3332222222 67789999999999999988433 67788777764 44322 2222222335
Q ss_pred EEEe--eCCEEEEEec-CCeEEEEECCCCCcC--ceeeecCCCc----------eEEEEEcCCCCEEEEEe-C-CcEEEE
Q psy8285 256 AMCW--NGNLLSCGTI-GGNILHYDVRTHSDY--PTAITREGDV----------VCGLKWSPNGRYLASGS-N-NTVKIW 318 (507)
Q Consensus 256 ~~~~--~~~~l~~~~~-dg~i~i~d~~~~~~~--~~~~~~~~~~----------v~~~~~~~~~~~l~~~~-d-~~i~i~ 318 (507)
-++. ++++++++.. .|.|.++-++....+ ......|.+. +....+.|++++|++.. . ..|.+|
T Consensus 93 yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 93 YVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 5566 6878777764 578999998764322 1122334433 78899999999999988 4 889999
Q ss_pred EcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC--C--eeeee-------ecCCCeEEEE
Q psy8285 319 DFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG--K--EKCHV-------KTDSQVTSIL 387 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--~--~~~~~-------~~~~~i~~~~ 387 (507)
++..+................+.|.|+|+++...+... .+++|.+|..... + .++.+ .+......+.
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E--L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE--LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEec--cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 99976322222222235567889999999976666654 6999999998773 2 22221 2335688999
Q ss_pred ECCCCCeEEEEeccCCCeEEEEeCCCc-cEEE---EeeccccceeEEEECCCCCEEEEEeCC-CcEEEEecCCCCc
Q psy8285 388 WSEQYRELVTSHGKQDCSLKMWEYPRL-HLIE---ELKIHQERILSAVLSPDQTCVAAASAD-ETISIWNCFPRDK 458 (507)
Q Consensus 388 ~s~~~~~l~~~~g~~d~~i~v~d~~~~-~~~~---~~~~~~~~i~~~~~s~~~~~l~s~~~d-g~i~iw~~~~~~~ 458 (507)
++|||++|.++ .-....|.+|.+... ..+. ....+...-+...|++++++|+++..+ ..|.+|......-
T Consensus 251 is~dGrFLYas-NRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 251 ISPDGRFLYAS-NRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred ECCCCCEEEEe-cCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence 99999999996 334458888887643 2222 222344446889999999999998865 4699998875543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-12 Score=123.49 Aligned_cols=211 Identities=11% Similarity=0.109 Sum_probs=143.5
Q ss_pred cEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecC---CeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCE
Q psy8285 232 YIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIG---GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY 306 (507)
Q Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 306 (507)
.|.++|.... ..+.+..+...+....| |++.|+....+ ..|++||+.++. ...+..+...+.+++|+||++.
T Consensus 171 ~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~--~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 171 ELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ--REKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred eEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC--EEEeecCCCCccceEECCCCCE
Confidence 5888887543 34455556667888888 78888887654 479999998764 2334445556677999999998
Q ss_pred EEEEe--C--CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCC
Q psy8285 307 LASGS--N--NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQ 382 (507)
Q Consensus 307 l~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 382 (507)
|+... + ..|++||+.++ ....+..+........|+|+++.++++........|+++|+.+++..........
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~----~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~ 323 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGK----QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGY 323 (417)
T ss_pred EEEEECCCCCccEEEEECCCC----CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC
Confidence 77543 2 46889998875 3344444555556789999998887766431234788889887765443334456
Q ss_pred eEEEEECCCCCeEEEEeccCCC---eEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCC---cEEEEec
Q psy8285 383 VTSILWSEQYRELVTSHGKQDC---SLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE---TISIWNC 453 (507)
Q Consensus 383 i~~~~~s~~~~~l~~~~g~~d~---~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg---~i~iw~~ 453 (507)
...+.|+|+|++++.+ ..++ .|.+||+.++.. ..+... .......|+||+++|+..+.++ .+++.+.
T Consensus 324 ~~~~~~spdg~~i~~~--~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~ 396 (417)
T TIGR02800 324 NASPSWSPDGDLIAFV--HREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVST 396 (417)
T ss_pred ccCeEECCCCCEEEEE--EccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEEC
Confidence 7788999999999984 3443 789999887544 233322 2345678999999888777654 3444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.4e-11 Score=106.35 Aligned_cols=271 Identities=12% Similarity=0.068 Sum_probs=168.9
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC---------CCCcEEEEeCCCceeEEEEeecCc-c-
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT---------CTEYIDLWHEQEERLIQKLRTHMH-Q- 253 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~-~- 253 (507)
+.|.+.|..+++....+... ..+ ..+ ++||++.|+++.+ .+..|.+||..+.+.+..+..... .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G---~~P-~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGG---FLP-NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEcc---CCC-cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 89999999999887776642 222 234 9999999999866 688999999999999988874222 1
Q ss_pred -------EEEEEeeCCEEEEEe-c-CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCC
Q psy8285 254 -------VIAMCWNGNLLSCGT-I-GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLD 324 (507)
Q Consensus 254 -------v~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~ 324 (507)
...++-||++|+... . +..|.+.|+.+++. ...+.- .+...-... ++..+.+.+.|+......+....
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv-v~ei~v-p~~~~vy~t-~e~~~~~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF-VRMMDV-PDCYHIFPT-ANDTFFMHCRDGSLAKVGYGTKG 178 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE-EEEEeC-CCCcEEEEe-cCCccEEEeecCceEEEEecCCC
Confidence 344455899888776 3 68899999998763 222222 111111112 12222233334333332222211
Q ss_pred CC--CCeeeecCCCCCe-eEEEEcc-CCCcEEEEEccCCCCeEEEEeCCCCC-----eeeeeec--------CCCeEEEE
Q psy8285 325 AK--RPQVNNQCHLSAV-KAIAWCP-WEPTLLATGGGICDQTVRLWNSMNGK-----EKCHVKT--------DSQVTSIL 387 (507)
Q Consensus 325 ~~--~~~~~~~~~~~~v-~~~~~~~-~~~~~~~~~~~~~d~~i~i~d~~~~~-----~~~~~~~--------~~~i~~~~ 387 (507)
.. .....+.....++ ..-.|.+ ++..++++. .|+|.+.|+...+ ....+.. ...+.-++
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~----eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia 254 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY----TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA 254 (352)
T ss_pred ceEEeeeeeecCCccccccCCceEcCCCcEEEEec----CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEE
Confidence 00 0000111000000 0114456 675555543 6999999964432 2222211 12334599
Q ss_pred ECCCCCeEEEEecc--------CCCeEEEEeCCCccEEEEeeccccceeEEEECCCCC-EEEEEe-CCCcEEEEecCCCC
Q psy8285 388 WSEQYRELVTSHGK--------QDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT-CVAAAS-ADETISIWNCFPRD 457 (507)
Q Consensus 388 ~s~~~~~l~~~~g~--------~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~ 457 (507)
++|+++.+++..-. ..+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.+.|..+.+
T Consensus 255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 99999999883111 125899999999999998875 45789999999999 887666 57889999999999
Q ss_pred cccceeecCCC
Q psy8285 458 KKRKARQVGSG 468 (507)
Q Consensus 458 ~~~~~~~~~~~ 468 (507)
.+......+..
T Consensus 334 ~i~~i~~vg~~ 344 (352)
T TIGR02658 334 ELSSVNQLGRG 344 (352)
T ss_pred EEeeeccCCCC
Confidence 88886444433
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-12 Score=124.53 Aligned_cols=236 Identities=15% Similarity=0.078 Sum_probs=153.5
Q ss_pred eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC--CcEEEEeCCCceeEEEEeecCccEEEEEe--eC
Q psy8285 186 SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT--EYIDLWHEQEERLIQKLRTHMHQVIAMCW--NG 261 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~ 261 (507)
.|.++|...++...+.. +...+....|+|+|+.|+.....+ ..|.+||+.+++... +......+....| ||
T Consensus 180 ~l~~~d~~g~~~~~l~~----~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQ----SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDG 254 (430)
T ss_pred EEEEECCCCCCceEEec----CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCC
Confidence 58888887665544443 567889999999999998873333 368899998876543 2223334445677 78
Q ss_pred CEEEE-EecCC--eEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC--C--cEEEEEcCCCCCCCCeeeecC
Q psy8285 262 NLLSC-GTIGG--NILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN--N--TVKIWDFRQLDAKRPQVNNQC 334 (507)
Q Consensus 262 ~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--~--~i~i~d~~~~~~~~~~~~~~~ 334 (507)
+.|+. ...+| .|+++|+.++. ...+..+........|+|||+.++..++ + .|+++|+..+ + ...+..
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g---~-~~~lt~ 328 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG---R-AERVTF 328 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCC---C-EEEeec
Confidence 87764 44454 58888998765 3344455555667899999998887763 3 5777777665 2 222221
Q ss_pred CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCC--CeEEEEeCC
Q psy8285 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQD--CSLKMWEYP 412 (507)
Q Consensus 335 ~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d--~~i~v~d~~ 412 (507)
.........|+|+++.++.+........|.++|+.+++... +..........|+|+|+.++.++ ..+ ..|.++++.
T Consensus 329 ~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~spdg~~i~~~~-~~~g~~~l~~~~~~ 406 (430)
T PRK00178 329 VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAPNGTMLIYAT-RQQGRGVLMLVSIN 406 (430)
T ss_pred CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECCCCCEEEEEE-ecCCceEEEEEECC
Confidence 22334467899999888777643112368899998876533 32222233568999999998853 223 357777774
Q ss_pred CccEEEEeeccccceeEEEECCC
Q psy8285 413 RLHLIEELKIHQERILSAVLSPD 435 (507)
Q Consensus 413 ~~~~~~~~~~~~~~i~~~~~s~~ 435 (507)
+.....+..+.+.+...+|+|-
T Consensus 407 -g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 407 -GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred -CCceEECcCCCCCcCCCccCCC
Confidence 3444455555666778888873
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.4e-12 Score=121.43 Aligned_cols=214 Identities=16% Similarity=0.118 Sum_probs=142.6
Q ss_pred cEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecC---CeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCE
Q psy8285 232 YIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIG---GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY 306 (507)
Q Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 306 (507)
.|.++|...+. .+.+..+...+....| |++.|+..+.+ ..|.+||+.+++ ...+....+.+....|+|||+.
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~--~~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR--REQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC--EEEccCCCCCcCCeEECCCCCE
Confidence 47777876544 4555566777888888 78888776543 368999998765 2333333445557899999998
Q ss_pred EEEEe--CC--cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCC
Q psy8285 307 LASGS--NN--TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQ 382 (507)
Q Consensus 307 l~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 382 (507)
|+... ++ .|++||+.++ ....+..+........|+||++.++.+........|+++|+.+++..........
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~----~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~ 332 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASR----QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNY 332 (430)
T ss_pred EEEEEccCCCceEEEEECCCC----CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC
Confidence 87544 33 6888899875 3334444555667789999998888776432234688889888775443322233
Q ss_pred eEEEEECCCCCeEEEEeccCCC--eEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCC-C--cEEEEecCC
Q psy8285 383 VTSILWSEQYRELVTSHGKQDC--SLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASAD-E--TISIWNCFP 455 (507)
Q Consensus 383 i~~~~~s~~~~~l~~~~g~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-g--~i~iw~~~~ 455 (507)
.....|+|+|++|+... ..++ .|.++|+.+++.. .+.. ........|+|||+.++..+.+ + .+.++++..
T Consensus 333 ~~~~~~Spdg~~i~~~~-~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 333 NARPRLSADGKTLVMVH-RQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ccceEECCCCCEEEEEE-ccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 45678999999998852 2333 5889999887643 3322 2223356899999998776644 3 466666643
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.7e-11 Score=107.09 Aligned_cols=235 Identities=11% Similarity=0.073 Sum_probs=153.8
Q ss_pred cCCeEEEEECCCCceeEEEecCCCC-----CCceEEEEEccCCCeEEEEeCC-CCcEEEEeCCCceeEEEEeecCccEEE
Q psy8285 183 LDTSVYTWNTKTNKTQLLVEYPTYD-----NAYISCVAWKPRTTDLAVTNTC-TEYIDLWHEQEERLIQKLRTHMHQVIA 256 (507)
Q Consensus 183 ~~~~i~iw~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~ 256 (507)
.+..|.+||..+.+....+.++. . ......++++|||++|++..-. +..|.+.|+.+++.+..+.... +..-
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~-~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~v 152 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPE-GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHI 152 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCC-CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEE
Confidence 56889999999999887776543 1 2234588999999999988324 7899999999999988877522 2222
Q ss_pred EEeeCCEEEEEecCCeEEEEECCCCCcCc----eeeecCCCce-EEEEEcC-CCCEEEEEeCCcEEEEEcCCCCC--CCC
Q psy8285 257 MCWNGNLLSCGTIGGNILHYDVRTHSDYP----TAITREGDVV-CGLKWSP-NGRYLASGSNNTVKIWDFRQLDA--KRP 328 (507)
Q Consensus 257 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~~v-~~~~~~~-~~~~l~~~~d~~i~i~d~~~~~~--~~~ 328 (507)
+......+.+-+.||......+....... ..+.....++ ..-.|.+ +|+++.+..+|.|.+.|+..... ...
T Consensus 153 y~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~ 232 (352)
T TIGR02658 153 FPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPA 232 (352)
T ss_pred EEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecce
Confidence 22222222233345544443333221100 0111100010 0013455 88888888889999999654311 122
Q ss_pred eeeecC-------CCCCeeEEEEccCCCcEEEEEcc-------CCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCC-
Q psy8285 329 QVNNQC-------HLSAVKAIAWCPWEPTLLATGGG-------ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYR- 393 (507)
Q Consensus 329 ~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~-------~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~- 393 (507)
...+.. ..+....++++|+++++++...+ ...+.|.++|..+++.+..+.....+..++++||++
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp 312 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKP 312 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCe
Confidence 221111 23344559999999888874321 013689999999999999999888999999999999
Q ss_pred eEEEEeccCCCeEEEEeCCCccEEEEe
Q psy8285 394 ELVTSHGKQDCSLKMWEYPRLHLIEEL 420 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~~~~~~~~ 420 (507)
.|+++ ...++.|.++|..+++.+.++
T Consensus 313 ~lyvt-n~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 313 LLYAL-STGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEe-CCCCCcEEEEECcCCeEEeee
Confidence 77764 346788999999999999887
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-12 Score=122.72 Aligned_cols=234 Identities=13% Similarity=0.106 Sum_probs=151.9
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC--CcEEEEeCCCceeEEEEeecCccEEEEEe--e
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT--EYIDLWHEQEERLIQKLRTHMHQVIAMCW--N 260 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~ 260 (507)
..|+++|....+...+.. +...+....|+|+|++|+.+...+ ..|++||+.+++... +..+...+.++.| |
T Consensus 170 ~~l~~~d~~g~~~~~l~~----~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spD 244 (417)
T TIGR02800 170 YELQVADYDGANPQTITR----SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPD 244 (417)
T ss_pred ceEEEEcCCCCCCEEeec----CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCC
Confidence 468888886555544443 556788999999999999873222 479999998875543 3334455666777 7
Q ss_pred CCEEEE-EecCC--eEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC--C--cEEEEEcCCCCCCCCeeeec
Q psy8285 261 GNLLSC-GTIGG--NILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN--N--TVKIWDFRQLDAKRPQVNNQ 333 (507)
Q Consensus 261 ~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--~--~i~i~d~~~~~~~~~~~~~~ 333 (507)
++.|+. .+.++ .|++||+.++. ...+..+........|+||++.|+..++ + .|+++|+..+ ....+.
T Consensus 245 g~~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~----~~~~l~ 318 (417)
T TIGR02800 245 GSKLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG----EVRRLT 318 (417)
T ss_pred CCEEEEEECCCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCC----CEEEee
Confidence 776654 44444 58888988754 3344444444556789999999887763 3 5777787754 233444
Q ss_pred CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCC--eEEEEeC
Q psy8285 334 CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDC--SLKMWEY 411 (507)
Q Consensus 334 ~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~--~i~v~d~ 411 (507)
.+...+..+.|+|+++.++++........|.+||+.++... .+..........|+|++++|+..+ ..++ .+++.+.
T Consensus 319 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~p~~spdg~~l~~~~-~~~~~~~l~~~~~ 396 (417)
T TIGR02800 319 FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTGLDESPSFAPNGRMILYAT-TRGGRGVLGLVST 396 (417)
T ss_pred cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCCCCCCceECCCCCEEEEEE-eCCCcEEEEEEEC
Confidence 45566778999999987777765211227899999876543 333233345668999999998853 2222 4566664
Q ss_pred CCccEEEEeeccccceeEEEE
Q psy8285 412 PRLHLIEELKIHQERILSAVL 432 (507)
Q Consensus 412 ~~~~~~~~~~~~~~~i~~~~~ 432 (507)
+++....+..+.+.+..+.|
T Consensus 397 -~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 397 -DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred -CCceeeECCCCCCCcCCCCC
Confidence 34455555544455555555
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.1e-12 Score=120.04 Aligned_cols=213 Identities=14% Similarity=0.105 Sum_probs=137.5
Q ss_pred cEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecC---CeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCE
Q psy8285 232 YIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIG---GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY 306 (507)
Q Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 306 (507)
.+.++|...... +.+..+...+....| ||+.|+..+.+ ..|+++|+.+++ ...+..........+|+|||+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~--~~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV--REKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC--eEEecCCCCCcCCeeECCCCCE
Confidence 566777654433 445556677787888 78888776543 258899998765 2233333334457899999998
Q ss_pred EEEEe--CC--cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCC
Q psy8285 307 LASGS--NN--TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQ 382 (507)
Q Consensus 307 l~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 382 (507)
|+... ++ .|+++|+.++ ....+..+........|+||++.++++........|.++|+.+++..........
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg----~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~ 351 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATK----ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQ 351 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCC----CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCC
Confidence 87654 34 4788888765 3344444555667899999998887776532235677788887775443222233
Q ss_pred eEEEEECCCCCeEEEEeccCCC--eEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCC-Cc--EEEEecC
Q psy8285 383 VTSILWSEQYRELVTSHGKQDC--SLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASAD-ET--ISIWNCF 454 (507)
Q Consensus 383 i~~~~~s~~~~~l~~~~g~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-g~--i~iw~~~ 454 (507)
....+|+|||++|+.+ ...++ .|.++|+.+++.. .+... .......|+|||+.|+..+.+ +. +++++..
T Consensus 352 ~~~~~~SpDG~~l~~~-~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 352 NLGGSITPDGRSMIMV-NRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred CcCeeECCCCCEEEEE-EecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 4567999999999885 33344 5666788777643 23322 122356899999988765543 33 6666764
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.7e-13 Score=121.94 Aligned_cols=190 Identities=16% Similarity=0.291 Sum_probs=135.8
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCC-CCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPT-YDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIA 256 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 256 (507)
++.+-.-|.|++.|....+..+++.... .....|+|+.|-|.++.++..+-.+|.+++||.. +....+.
T Consensus 188 llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~----------~~~~~t~ 257 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE----------IVCGATA 257 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc----------ccccCCC
Confidence 6777688899999887754443332221 1457899999999887666655899999999862 1112222
Q ss_pred EEe----eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeee
Q psy8285 257 MCW----NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVN 331 (507)
Q Consensus 257 ~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~ 331 (507)
..| ++..+......+ .....+.....--...|..++|+|||++||+.+ ||.++|+|..+. +.+-.
T Consensus 258 p~~~~~k~~~~f~i~t~ks-------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~ 327 (636)
T KOG2394|consen 258 PSYQALKDGDQFAILTSKS-------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGV 327 (636)
T ss_pred CcccccCCCCeeEEeeeec-------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHH
Confidence 222 455554433221 111124444444556899999999999999999 799999999987 55555
Q ss_pred ecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECC
Q psy8285 332 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSE 390 (507)
Q Consensus 332 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~ 390 (507)
++.--+...|++|+|||+ ++++|++ |.-|.||.+...+.+..-.+| +.|..++|.|
T Consensus 328 mkSYFGGLLCvcWSPDGK-yIvtGGE--DDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 328 MKSYFGGLLCVCWSPDGK-YIVTGGE--DDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHhhccceEEEEEcCCcc-EEEecCC--cceEEEEEeccceEEEeccccccceeeEeecc
Confidence 555667899999999995 6666665 999999999999988887777 7899999984
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-10 Score=108.16 Aligned_cols=259 Identities=16% Similarity=0.169 Sum_probs=167.8
Q ss_pred eeeeCCCC--EEEEEc----CCeEEEEECCC--CceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC-
Q psy8285 170 GLDWGYHD--TLAVAL----DTSVYTWNTKT--NKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE- 240 (507)
Q Consensus 170 ~~~~s~~~--~~~~~~----~~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~- 240 (507)
.++++|++ ++++.. ++.|..|++.. ++...+-.... .......++++|++++|+++...+|.|.++++..
T Consensus 41 ~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~ 119 (345)
T PF10282_consen 41 WLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD 119 (345)
T ss_dssp CEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred eEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC
Confidence 37788876 555554 57898888776 45554444432 3455678999999999999967899999999987
Q ss_pred ceeEEE--Eee-----------cCccEEEEEe--eCCEEEEEec-CCeEEEEECCCCCcCce----eeecCCCceEEEEE
Q psy8285 241 ERLIQK--LRT-----------HMHQVIAMCW--NGNLLSCGTI-GGNILHYDVRTHSDYPT----AITREGDVVCGLKW 300 (507)
Q Consensus 241 ~~~~~~--~~~-----------~~~~v~~~~~--~~~~l~~~~~-dg~i~i~d~~~~~~~~~----~~~~~~~~v~~~~~ 300 (507)
+..... ... ......++.+ +++++++... ...|.+|++........ ........-+.+.|
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f 199 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF 199 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence 333222 111 1234667777 6777776543 45799999987542121 12244566789999
Q ss_pred cCCCCEEEEEe--CCcEEEEEcCCCC-CCCCeeeecC------CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC--
Q psy8285 301 SPNGRYLASGS--NNTVKIWDFRQLD-AKRPQVNNQC------HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM-- 369 (507)
Q Consensus 301 ~~~~~~l~~~~--d~~i~i~d~~~~~-~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-- 369 (507)
+|+++++++.. ++.|.++++.... ..+.+..... .......+.++|||++++++..+ ...|.+|++.
T Consensus 200 ~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~--~~sI~vf~~d~~ 277 (345)
T PF10282_consen 200 SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG--SNSISVFDLDPA 277 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT--TTEEEEEEECTT
T ss_pred cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc--CCEEEEEEEecC
Confidence 99999998888 3999999998321 1112222211 12257899999999999888876 8999999983
Q ss_pred CCCe--eeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeC--CCccEEEEee-ccccceeEEEE
Q psy8285 370 NGKE--KCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEY--PRLHLIEELK-IHQERILSAVL 432 (507)
Q Consensus 370 ~~~~--~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~--~~~~~~~~~~-~~~~~i~~~~~ 432 (507)
+++. +..+... .....+.++|+|++|+++ ...++.|.+|++ .+|.+...-. ..-....||.|
T Consensus 278 ~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va-~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 278 TGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVA-NQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTEEEEEEEEESSSSEEEEEE-TTSSEEEEE-ETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCceEEEEEEeCCCCCccEEEEeCCCCEEEEE-ecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 3332 3334443 458999999999999996 567788999976 4555433322 12233455554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-11 Score=111.44 Aligned_cols=300 Identities=12% Similarity=0.112 Sum_probs=202.3
Q ss_pred ccceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC-------------
Q psy8285 165 DFYTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT------------- 230 (507)
Q Consensus 165 ~~~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d------------- 230 (507)
++.+..+.|||.| +++...-..|.+|.-...... ..+ ....|..+.|+|.+++|.+- +..
T Consensus 32 ~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l--~~~---~~~~V~~~~fSP~~kYL~tw-~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 32 NWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKL--VRF---RHPDVKYLDFSPNEKYLVTW-SREPIIEPEIEISPFT 105 (561)
T ss_pred CcchhheeecCcchheehhhccceEEccccchhhe--eee---ecCCceecccCcccceeeee-ccCCccChhhccCCcc
Confidence 4556779999999 666667778999988776633 333 33569999999999999986 432
Q ss_pred --CcEEEEeCCCceeEEEEeecCcc--EE-EEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecC-CCceEEEEEcC
Q psy8285 231 --EYIDLWHEQEERLIQKLRTHMHQ--VI-AMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITRE-GDVVCGLKWSP 302 (507)
Q Consensus 231 --g~i~iwd~~~~~~~~~~~~~~~~--v~-~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~ 302 (507)
..+.+||+.++..+..+.....+ .+ -+.| ++++.|-. -...++|+++ +.......+... ...|....|+|
T Consensus 106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP 183 (561)
T ss_pred ccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence 35999999999999888775555 33 3444 66665554 3457999997 433222222222 35688899999
Q ss_pred CCC--EEEEE-----e-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccC--------CCCeEEEE
Q psy8285 303 NGR--YLASG-----S-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGI--------CDQTVRLW 366 (507)
Q Consensus 303 ~~~--~l~~~-----~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--------~d~~i~i~ 366 (507)
.++ .|+.- + .+++++|.+... ..+.+..-....-..+.|.+.|.++++-...+ .+..++++
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~---s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~ 260 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKN---SVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLL 260 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCC---CeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEE
Confidence 643 34442 2 378999998855 44433322333345789999998776543210 14678899
Q ss_pred eCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCC-
Q psy8285 367 NSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASAD- 445 (507)
Q Consensus 367 d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d- 445 (507)
+++...+.......++|...+|.|.++.+++.+|..+..+.++|++.. ....+ ....=+.+.|+|.+++++.++-|
T Consensus 261 ~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~n 337 (561)
T COG5354 261 RITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDN 337 (561)
T ss_pred eecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCc
Confidence 987555444444468999999999999999987889999999999865 33333 34445678899999999998765
Q ss_pred --CcEEEEecCCCCcccceeecCCCcceEEeeccC
Q psy8285 446 --ETISIWNCFPRDKKRKARQVGSGSSLEFAILKQ 478 (507)
Q Consensus 446 --g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (507)
|.+-+|+..........-........+|+++..
T Consensus 338 l~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~q 372 (561)
T COG5354 338 LQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQ 372 (561)
T ss_pred cccceEEeccCCceEEEEEeecCCceEeeccCCce
Confidence 789999987665544222222233335555543
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-12 Score=115.94 Aligned_cols=279 Identities=14% Similarity=0.189 Sum_probs=175.3
Q ss_pred eeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC----------CCCcEEEE
Q psy8285 168 TSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT----------CTEYIDLW 236 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------~dg~i~iw 236 (507)
-+-+.|||.| .++.--...|.+|--.+-...+.+. | ..|.-+.|||..+||++-+. ....+.||
T Consensus 213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~----H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFY----H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeEEecCCceEEEEEeccceeeecCccHHHHHhcc----C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 3558999999 4444456679999766554444443 3 35899999999999998621 22579999
Q ss_pred eCCCceeEEEEeecCc--c---EEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe
Q psy8285 237 HEQEERLIQKLRTHMH--Q---VIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS 311 (507)
Q Consensus 237 d~~~~~~~~~~~~~~~--~---v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 311 (507)
|+.+|...+.+..... . +..-++|++++|.-.. ..|.||+..... +.....-.-..|....|+|.+++||.-.
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~-lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM-LLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCcee-eecccccCCccccCcccCCCcceEEEEc
Confidence 9999998888776322 2 2222337888887775 568888766432 1111111223455556666555555322
Q ss_pred ---C---Cc----------------------------------------------------EEEEEcCCCCCCCCeeeec
Q psy8285 312 ---N---NT----------------------------------------------------VKIWDFRQLDAKRPQVNNQ 333 (507)
Q Consensus 312 ---d---~~----------------------------------------------------i~i~d~~~~~~~~~~~~~~ 333 (507)
+ .. +.|+.++..+ -++...
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd--Ipve~v- 442 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD--IPVEVV- 442 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC--CCceee-
Confidence 0 11 2222222211 111111
Q ss_pred CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC-C---CeeeeeecCCCeEEEEECCCCCeEEEEe-ccCCCeEEE
Q psy8285 334 CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-G---KEKCHVKTDSQVTSILWSEQYRELVTSH-GKQDCSLKM 408 (507)
Q Consensus 334 ~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~-g~~d~~i~v 408 (507)
.-...|...+|-|.|..+.+..+.....++.+|-+.+ . +.+..+.. ...+.+.|+|.|++++++. ++..|.+..
T Consensus 443 elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F 521 (698)
T KOG2314|consen 443 ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPKGRFVVVAALVSRRGDLEF 521 (698)
T ss_pred ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCCCcEEEEEEecccccceEE
Confidence 1345678899999998887777665567899998873 2 22333332 4678899999999998753 456889999
Q ss_pred EeCCCccEEEEeeccccceeEEEECCCCCEEEEEeC------CCcEEEEecCCCC
Q psy8285 409 WEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA------DETISIWNCFPRD 457 (507)
Q Consensus 409 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~~ 457 (507)
+|+........-.......+.+.|.|.|+|+++++. |.--++|+++...
T Consensus 522 ~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 522 YDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred EecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecHH
Confidence 998743222221112234678999999999999875 4456788877543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-11 Score=108.30 Aligned_cols=355 Identities=14% Similarity=0.131 Sum_probs=216.5
Q ss_pred ccceeeeeeccCcceeeeccccccccceeeecccCCcceeeeecCcccceeeccccccccccCCccCC----ceeEeecC
Q psy8285 6 LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRESSRSKMVNT----DRYVVDRS 81 (507)
Q Consensus 6 ~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~----~~~~~~~~ 81 (507)
.-++..+.|||.|.+ |++.- -.-|.+|.-..+..+..+. ...|..+.|||..+.|++...... ..+.+.+
T Consensus 32 ~~p~~~~~~SP~G~~-l~~~~---~~~V~~~~g~~~~~l~~~~-~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~- 105 (561)
T COG5354 32 NWPVAYVSESPLGTY-LFSEH---AAGVECWGGPSKAKLVRFR-HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT- 105 (561)
T ss_pred CcchhheeecCcchh-eehhh---ccceEEccccchhheeeee-cCCceecccCcccceeeeeccCCccChhhccCCcc-
Confidence 346788999999998 77664 6889999988877554444 567889999999988776421110 0000000
Q ss_pred CccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCCC
Q psy8285 82 SYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPS 161 (507)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (507)
. ..+..+|.... .+.+...+.....
T Consensus 106 ----------------------~---------------~n~~~vwd~~s---------------g~iv~sf~~~~q~--- 130 (561)
T COG5354 106 ----------------------S---------------KNNVFVWDIAS---------------GMIVFSFNGISQP--- 130 (561)
T ss_pred ----------------------c---------------cCceeEEeccC---------------ceeEeeccccCCc---
Confidence 0 00111222111 0011100000000
Q ss_pred cccccce-eeeeeCCCC-EEEEEcCCeEEEEECCCCcee--EEEecCCCCCCceEEEEEccCC--CeEEEE----eCCCC
Q psy8285 162 IINDFYT-SGLDWGYHD-TLAVALDTSVYTWNTKTNKTQ--LLVEYPTYDNAYISCVAWKPRT--TDLAVT----NTCTE 231 (507)
Q Consensus 162 ~~~~~~i-~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~--~~l~~~----~~~dg 231 (507)
+.. .-+.|+-+. ++|--....++|+++ ++... ....+ ....|....|+|.+ ..|+.- ....+
T Consensus 131 ----~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~l---r~~gi~dFsisP~~n~~~la~~tPEk~~kpa 202 (561)
T COG5354 131 ----YLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKNL---RPVGILDFSISPEGNHDELAYWTPEKLNKPA 202 (561)
T ss_pred ----ccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhhc---cccceeeEEecCCCCCceEEEEccccCCCCc
Confidence 000 136677655 444346678999997 43332 12222 23568888999874 334432 25678
Q ss_pred cEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEe-----------cCCeEEEEECCCCCcCceeeecCCCceEEE
Q psy8285 232 YIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGT-----------IGGNILHYDVRTHSDYPTAITREGDVVCGL 298 (507)
Q Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 298 (507)
.+++|.+..+..+.+-.-....-..+.| .|++|+.-- ...+++++++.... .. ......++|..+
T Consensus 203 ~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~-V~~~~~~pVhdf 280 (561)
T COG5354 203 MVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IP-VEKDLKDPVHDF 280 (561)
T ss_pred EEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cc-eeccccccceee
Confidence 9999999876665544333333345556 355544321 12468889988554 22 222668899999
Q ss_pred EEcCCCCEEEEEe---CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee
Q psy8285 299 KWSPNGRYLASGS---NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC 375 (507)
Q Consensus 299 ~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 375 (507)
+|.|.++.+++.+ ...+.++|++.. .... .....=..+.|+|.++++++.+-+...|.+.+||........
T Consensus 281 ~W~p~S~~F~vi~g~~pa~~s~~~lr~N----l~~~--~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~ 354 (561)
T COG5354 281 TWEPLSSRFAVISGYMPASVSVFDLRGN----LRFY--FPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVA 354 (561)
T ss_pred eecccCCceeEEecccccceeecccccc----eEEe--cCCcccccccccCcccEEEEecCCccccceEEeccCCceEEE
Confidence 9999998877765 388999999863 2222 244455678899999888888876677899999986654444
Q ss_pred -eeecCCCeEEEEECCCCCeEEEEecc----CCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCC
Q psy8285 376 -HVKTDSQVTSILWSEQYRELVTSHGK----QDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE 446 (507)
Q Consensus 376 -~~~~~~~i~~~~~s~~~~~l~~~~g~----~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg 446 (507)
.+.+ ....-+.|+||++++.+...+ .|+.|.|||+...... ..+.+.|.|.+++..+.+.+.
T Consensus 355 ~~~~~-~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 355 GAFNG-LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred EEeec-CCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 3333 345667899999999885322 4788999998653322 345667777777665555443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-11 Score=115.22 Aligned_cols=238 Identities=11% Similarity=0.090 Sum_probs=146.1
Q ss_pred CcEEEEeCCCceeEEEEeecCccEEEEEe--eCCE--E-EEEecCC--eEEEEECCCCCcCceeeecCCCceEEEEEcCC
Q psy8285 231 EYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNL--L-SCGTIGG--NILHYDVRTHSDYPTAITREGDVVCGLKWSPN 303 (507)
Q Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~--l-~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 303 (507)
..|.+.|...+.. +.+.........-.| ||+. + ++...+| .|++.++.+++ ...+....+.....+|+||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--~~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--GKKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC--ceEeecCCCCccceEECCC
Confidence 3677777665443 334444555566677 6654 2 2444443 58888888765 3344444555567899999
Q ss_pred CCEEEEEeC--C--cEEE--EEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC--eEEEEeCCC-CCee
Q psy8285 304 GRYLASGSN--N--TVKI--WDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ--TVRLWNSMN-GKEK 374 (507)
Q Consensus 304 ~~~l~~~~d--~--~i~i--~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~-~~~~ 374 (507)
|+.|+...+ + .+++ |++..+...................+|+|||+.++.+... ++ .|.++++.. +...
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~--~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNK--DGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECC--CCCceEEEEECcccccce
Confidence 999887663 3 3433 6665431112222222223345678999999888877643 45 455555542 2223
Q ss_pred eeeecC-CCeEEEEECCCCCeEEEEeccCC--CeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeC---CCcE
Q psy8285 375 CHVKTD-SQVTSILWSEQYRELVTSHGKQD--CSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA---DETI 448 (507)
Q Consensus 375 ~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d--~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~---dg~i 448 (507)
..+... ..+....|+|||+.|+.+. ..+ ..|.+||+.+++... +......+....|+|||+.|+..+. ...|
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~-~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCS-VIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEE-cCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 333333 4667899999999998752 222 479999998887643 3333445678999999998875443 3568
Q ss_pred EEEecCCCCcccceeecCCCcceEEee
Q psy8285 449 SIWNCFPRDKKRKARQVGSGSSLEFAI 475 (507)
Q Consensus 449 ~iw~~~~~~~~~~~~~~~~~~~~~~~~ 475 (507)
+++++..++........+......|++
T Consensus 398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~ 424 (428)
T PRK01029 398 YLISLITKKTRKIVIGSGEKRFPSWGA 424 (428)
T ss_pred EEEECCCCCEEEeecCCCcccCceecC
Confidence 888988776655444444445555654
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-11 Score=110.31 Aligned_cols=319 Identities=16% Similarity=0.155 Sum_probs=204.0
Q ss_pred eeeeeccCcceeeeccccccccceeeecccCCcceeeeecCcccceeeccccccccccCCccCCceeEeecCCccccccc
Q psy8285 10 KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRESSRSKMVNTDRYVVDRSSYDSLCSH 89 (507)
Q Consensus 10 ~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (507)
+-+.|||-|.| |+|-. -.-|.+|--.+...++.|.| ..|.-+.|||..+.|++....- . ...
T Consensus 214 tyv~wSP~GTY-L~t~H---k~GI~lWGG~~f~r~~RF~H-p~Vq~idfSP~EkYLVT~s~~p------~-------~~~ 275 (698)
T KOG2314|consen 214 TYVRWSPKGTY-LVTFH---KQGIALWGGESFDRIQRFYH-PGVQFIDFSPNEKYLVTYSPEP------I-------IVE 275 (698)
T ss_pred eeEEecCCceE-EEEEe---ccceeeecCccHHHHHhccC-CCceeeecCCccceEEEecCCc------c-------ccC
Confidence 45789999999 77775 67899998777666665654 5688899999998877643211 0 000
Q ss_pred cccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCCCccccccee
Q psy8285 90 YLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSIINDFYTS 169 (507)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 169 (507)
+. .. +.....+|.+.... . .|..+.-...... -.
T Consensus 276 ~~--d~-----------------------e~~~l~IWDI~tG~------l------krsF~~~~~~~~~---------WP 309 (698)
T KOG2314|consen 276 ED--DN-----------------------EGQQLIIWDIATGL------L------KRSFPVIKSPYLK---------WP 309 (698)
T ss_pred cc--cC-----------------------CCceEEEEEccccc------h------hcceeccCCCccc---------cc
Confidence 00 00 00111333322110 0 0000000000001 12
Q ss_pred eeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEe----CCCCcEEEEeCCCceeE
Q psy8285 170 GLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTN----TCTEYIDLWHEQEERLI 244 (507)
Q Consensus 170 ~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~dg~i~iwd~~~~~~~ 244 (507)
.+.||.|. ++|.-....|.||+..+........+ ....|....|+|.+..||.-. ..-..+.+..+.+++.+
T Consensus 310 ~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Ksl---ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~i 386 (698)
T KOG2314|consen 310 IFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSL---KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREI 386 (698)
T ss_pred eEEeccCCceeEEeccceEEEEecCceeeeccccc---CCccccCcccCCCcceEEEEcccccCCcceEEEEecCcccee
Confidence 48899887 77766778999999876554433333 456799999999998888651 11236778888888777
Q ss_pred EEEeecCccEEEEEe--eCCEEEEEe----------cCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-
Q psy8285 245 QKLRTHMHQVIAMCW--NGNLLSCGT----------IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS- 311 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 311 (507)
++..-+.-.=..+.| +|++|+.-- .-..+.|+.++....+. .....+..|...+|-|.|..+++-+
T Consensus 387 Rt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv-e~velke~vi~FaWEP~gdkF~vi~g 465 (698)
T KOG2314|consen 387 RTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV-EVVELKESVIAFAWEPHGDKFAVISG 465 (698)
T ss_pred eeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc-eeeecchheeeeeeccCCCeEEEEEc
Confidence 766655544455666 677776532 22356788888766333 3445677888999999998776644
Q ss_pred -C--CcEEEEEcCC-CCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee-eeecCCCeEEE
Q psy8285 312 -N--NTVKIWDFRQ-LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC-HVKTDSQVTSI 386 (507)
Q Consensus 312 -d--~~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~~ 386 (507)
+ .++.+|.+++ ......+..+. ....+.+.|+|.|+.+++.+-.+..|.+.++|+.-..... ....|...+.+
T Consensus 466 ~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~v 543 (698)
T KOG2314|consen 466 NTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEV 543 (698)
T ss_pred cccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccc
Confidence 3 8899999984 33334444543 3567889999999888777766678999999987532222 22334567889
Q ss_pred EECCCCCeEEEE
Q psy8285 387 LWSEQYRELVTS 398 (507)
Q Consensus 387 ~~s~~~~~l~~~ 398 (507)
.|.|.|+|++++
T Consensus 544 eWDPtGRYvvT~ 555 (698)
T KOG2314|consen 544 EWDPTGRYVVTS 555 (698)
T ss_pred eECCCCCEEEEe
Confidence 999999999994
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-10 Score=103.55 Aligned_cols=214 Identities=14% Similarity=0.121 Sum_probs=144.6
Q ss_pred CCC-EEEEEcCCeEEEEECCCCceeEEEec-CCC--C--CCceE---EEE-Ecc-CCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 175 YHD-TLAVALDTSVYTWNTKTNKTQLLVEY-PTY--D--NAYIS---CVA-WKP-RTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 175 ~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~-~~~--~--~~~v~---~~~-~~~-~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
.|| .+.-+..|.|++||..+.+..++--- +-. . ...+. -+. |++ +|.+++.. ..|...|.+...+-.
T Consensus 276 sDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~V--SRGkaFi~~~~~~~~ 353 (668)
T COG4946 276 SDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALV--SRGKAFIMRPWDGYS 353 (668)
T ss_pred CCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEE--ecCcEEEECCCCCee
Confidence 455 77778899999999988765443211 100 0 00111 111 222 56777777 578888887766554
Q ss_pred EEEEeecCccEEEEEe--eCCEEEEEecCC-eEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC-CcEEEEE
Q psy8285 244 IQKLRTHMHQVIAMCW--NGNLLSCGTIGG-NILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWD 319 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~--~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d 319 (507)
++. ++...|.-..+ +++-++.|..|| .+-|+|.++++ .+.+...-+.|.++..+++|++++++.| ..+.+.|
T Consensus 354 iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 354 IQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred EEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 443 35555655555 677899999999 89999999875 5666677788999999999999999997 9999999
Q ss_pred cCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEc-cCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEE
Q psy8285 320 FRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGG-GICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVT 397 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (507)
+.++ .....-+...+-|+.+.|+|+++.+..+-- +-.-..|+++|+.+++........+.-.+.+|.|++++|..
T Consensus 430 idng---nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 430 IDNG---NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred ecCC---CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEE
Confidence 9998 444444446678999999999855544321 11234799999988776554433333345556666665544
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-11 Score=116.25 Aligned_cols=385 Identities=16% Similarity=0.173 Sum_probs=212.7
Q ss_pred CcccccceeeeeeccC-----------cceeeeccccccccceeeecccCCcceeeee-cCcccceeecccccccc-ccC
Q psy8285 2 NQCHLSAVKAIAWCPW-----------EPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRES-SRS 68 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~-----------g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~-~~~ 68 (507)
++-|...|+.+.|.|- ...+||++. -.|.|.|||...+..+..+. +...+..++|-+..... ...
T Consensus 51 ie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD--~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~L 128 (1062)
T KOG1912|consen 51 IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD--ISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVL 128 (1062)
T ss_pred cccCccceeEEEeccCCCchhccCccccceeEEecc--ccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhee
Confidence 4568999999999763 234678887 78999999999999999888 57888888887654332 111
Q ss_pred CccCCceeEeecCCccccccccccccccccCchhHHHHHHhhhh-hhccccccccc-------ceeEecCCC-CCcc--c
Q psy8285 69 KMVNTDRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLS-FLLHGFEIDRK-------KVLNQSKRT-VSPT--Q 137 (507)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~-~~~~--~ 137 (507)
.+..+..++..|....+ -..|..+-.. ..+. +..+..+..+. .++...--+ ..|. +
T Consensus 129 laIh~ss~lvLwntdtG-~k~Wk~~ys~------------~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pg 195 (1062)
T KOG1912|consen 129 LAIHGSSTLVLWNTDTG-EKFWKYDYSH------------EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPG 195 (1062)
T ss_pred EEecCCcEEEEEEccCC-ceeeccccCC------------cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCc
Confidence 22223334444311111 1122222110 0011 11111121111 111111111 0000 0
Q ss_pred ccccCC-------CCCccccCCchhhhcCCCccccc---ceeeeeeCCC--CEEEEEcCCeEEEEECCCCceeEEEecCC
Q psy8285 138 FLRTLG-------KLPRKVKAKPERILEAPSIINDF---YTSGLDWGYH--DTLAVALDTSVYTWNTKTNKTQLLVEYPT 205 (507)
Q Consensus 138 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~s~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~ 205 (507)
...-+. ...|..... ......-...+ |.-.++|+|. +++.......+.++|++-........++
T Consensus 196 k~~qI~sd~Sdl~~lere~at~---ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie- 271 (1062)
T KOG1912|consen 196 KEFQITSDHSDLAHLERETATG---NSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE- 271 (1062)
T ss_pred eeEEEecCccchhhhhhhhhcc---ccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec-
Confidence 000000 000000000 00000001111 1223777884 4888888999999999988887777774
Q ss_pred CCCCceEEEEEccCC--CeEEEEeCCCCcEEEEeCCCceeEEE-----Ee-ecCccEEEEEe--------------eCCE
Q psy8285 206 YDNAYISCVAWKPRT--TDLAVTNTCTEYIDLWHEQEERLIQK-----LR-THMHQVIAMCW--------------NGNL 263 (507)
Q Consensus 206 ~~~~~v~~~~~~~~~--~~l~~~~~~dg~i~iwd~~~~~~~~~-----~~-~~~~~v~~~~~--------------~~~~ 263 (507)
.+.+.-+.+-|+. ..|++. ..||.+.+|-.+......+ +. .-...+.+++. +...
T Consensus 272 --r~~akfv~vlP~~~rd~Lfcl-H~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa 348 (1062)
T KOG1912|consen 272 --RGGAKFVDVLPDPRRDALFCL-HSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSA 348 (1062)
T ss_pred --cCCcceeEeccCCCcceEEEE-ecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhh
Confidence 3445556666654 567777 8999999997543111100 00 00111112211 2444
Q ss_pred EEEEecCCeEEEEECCCCCcCce------------------------------eeecCCCceEEEEEcC-----------
Q psy8285 264 LSCGTIGGNILHYDVRTHSDYPT------------------------------AITREGDVVCGLKWSP----------- 302 (507)
Q Consensus 264 l~~~~~dg~i~i~d~~~~~~~~~------------------------------~~~~~~~~v~~~~~~~----------- 302 (507)
++.--.+|.+.+|.+++++.... ...+|.....+....|
T Consensus 349 ~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p 428 (1062)
T KOG1912|consen 349 LAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDP 428 (1062)
T ss_pred hhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCC
Confidence 44445567777787774431100 0112344444444333
Q ss_pred CC-------CEEEEEeC-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEE-ccC------CCCeEEEEe
Q psy8285 303 NG-------RYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATG-GGI------CDQTVRLWN 367 (507)
Q Consensus 303 ~~-------~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~------~d~~i~i~d 367 (507)
-+ .++|.|.+ |+|.++|+.++ .....+..|...|.++.|-.... ++..+ +.. .-+.+.+-|
T Consensus 429 ~~n~~~~~~pLvAvGT~sGTV~vvdvst~---~v~~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtd 504 (1062)
T KOG1912|consen 429 GGNTPAGTVPLVAVGTNSGTVDVVDVSTN---AVAASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTD 504 (1062)
T ss_pred CCCccceeeeeEEeecCCceEEEEEecch---hhhhhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEE
Confidence 11 25677775 99999999998 67777888999999999986553 33322 111 124678899
Q ss_pred CCCCCeee--eeecC--CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc
Q psy8285 368 SMNGKEKC--HVKTD--SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 368 ~~~~~~~~--~~~~~--~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~ 414 (507)
+++|.... .++.. .+|..+..|..++|++. ...+.-+.+||+++.
T Consensus 505 LrtGlsk~fR~l~~~despI~~irvS~~~~yLai--~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 505 LRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAI--LFRREPLEIWDLKTL 553 (1062)
T ss_pred cccccccccccCCCCCcCcceeeeecccCceEEE--EecccchHHHhhccc
Confidence 99986433 22333 68999999999999999 678999999998553
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.5e-10 Score=96.30 Aligned_cols=270 Identities=14% Similarity=0.177 Sum_probs=176.5
Q ss_pred CCcEEEEeCCCce-eE--EEEeecCccEEEEEe--eCCEEEEEecC---CeEEEEECCCC--CcC-ceeeecCCCceEEE
Q psy8285 230 TEYIDLWHEQEER-LI--QKLRTHMHQVIAMCW--NGNLLSCGTIG---GNILHYDVRTH--SDY-PTAITREGDVVCGL 298 (507)
Q Consensus 230 dg~i~iwd~~~~~-~~--~~~~~~~~~v~~~~~--~~~~l~~~~~d---g~i~i~d~~~~--~~~-~~~~~~~~~~v~~~ 298 (507)
+.-|++|++.+.. .+ ..+-......+-++| +++.|.++..+ |.|..|.++.. ... .........+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 6679999987432 11 122235556677777 56678777654 66777777653 211 11111223344789
Q ss_pred EEcCCCCEEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCC----------eeEEEEccCCCcEEEEEccCCCCeEEEE
Q psy8285 299 KWSPNGRYLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSA----------VKAIAWCPWEPTLLATGGGICDQTVRLW 366 (507)
Q Consensus 299 ~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~~~~~~~~~d~~i~i~ 366 (507)
+++++++++++++ . |.|.++-++.............|.+. +....+.|++++++++.-+ -..|.+|
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG--~Dri~~y 172 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG--TDRIFLY 172 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC--CceEEEE
Confidence 9999999999999 4 99999999774333444333445555 8889999999888888766 7789999
Q ss_pred eCCCCCeee----eeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc-cEEEEeec---------cccceeEEEE
Q psy8285 367 NSMNGKEKC----HVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL-HLIEELKI---------HQERILSAVL 432 (507)
Q Consensus 367 d~~~~~~~~----~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~-~~~~~~~~---------~~~~i~~~~~ 432 (507)
++..++... .++.....+.+.|+|++++..+. .--+++|.+|..... ..+..++. .......|..
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v-~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLV-NELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEE-eccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 999876433 23344678999999999998886 567899999998763 33333332 1345678999
Q ss_pred CCCCCEEEEEeC-CCcEEEEecCCCCcccceeecCCCcceEEeeccCccccceeeeecccccccceeEEeeec
Q psy8285 433 SPDQTCVAAASA-DETISIWNCFPRDKKRKARQVGSGSSLEFAILKQPVSLTALLRSRAVEKQQHAIAYTVFG 504 (507)
Q Consensus 433 s~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 504 (507)
++||++|.++.. ...|-+|.+.+......+. +......-.|+.-.+...+.++.++.++......|..+.
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~--~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDGGKLELV--GITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCCCEEEEE--EEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 999999988753 3478889887654332211 111111122344445555666666666666666666553
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.6e-10 Score=99.12 Aligned_cols=281 Identities=13% Similarity=0.046 Sum_probs=177.7
Q ss_pred EcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC-CceeEEE-EeecCccEEEEEe
Q psy8285 182 ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ-EERLIQK-LRTHMHQVIAMCW 259 (507)
Q Consensus 182 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~-~~~~~~~-~~~~~~~v~~~~~ 259 (507)
+..|.|++=........+...+++ | |++-..-.+ +..+.+ ..+|.=.+|.+. .|+-++. ..-+.--...+.-
T Consensus 203 GtrGklWis~d~g~tFeK~vdl~~-~---vS~PmIV~~-RvYFls-D~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~ns 276 (668)
T COG4946 203 GTRGKLWISSDGGKTFEKFVDLDG-N---VSSPMIVGE-RVYFLS-DHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANS 276 (668)
T ss_pred CccceEEEEecCCcceeeeeecCC-C---cCCceEEcc-eEEEEe-cccCccceEEeccCCchhhhcCCchhccccccCC
Confidence 344444443333335667777665 3 444444332 333334 566655555432 1222222 1112222233333
Q ss_pred eCCEEEEEecCCeEEEEECCCCCcCceeee-----cCC--CceEEEE----EcC-CCCEEEEEeCCcEEEEEcCCCCCCC
Q psy8285 260 NGNLLSCGTIGGNILHYDVRTHSDYPTAIT-----REG--DVVCGLK----WSP-NGRYLASGSNNTVKIWDFRQLDAKR 327 (507)
Q Consensus 260 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~--~~v~~~~----~~~-~~~~l~~~~d~~i~i~d~~~~~~~~ 327 (507)
||+.++... .|.|++||..+.......+. ..+ ..+.-.. |++ +|.+++..+.|...+.+...+ .
T Consensus 277 DGkrIvFq~-~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~---~ 352 (668)
T COG4946 277 DGKRIVFQN-AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDG---Y 352 (668)
T ss_pred CCcEEEEec-CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCC---e
Confidence 788776654 68899999987652111111 000 0111111 222 688999999999999887765 2
Q ss_pred CeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC-eEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeE
Q psy8285 328 PQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ-TVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSL 406 (507)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~-~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i 406 (507)
.+ . .++.+.|.-..+..+++.++. +. .|| .+-++|.++++.......-+.|.++..+|+|+++++ +.....|
T Consensus 353 ~i-q-v~~~~~VrY~r~~~~~e~~vi-gt--~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vv--aNdr~el 425 (668)
T COG4946 353 SI-Q-VGKKGGVRYRRIQVDPEGDVI-GT--NDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVV--ANDRFEL 425 (668)
T ss_pred eE-E-cCCCCceEEEEEccCCcceEE-ec--cCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEE--EcCceEE
Confidence 22 2 246777888888877764444 33 377 899999998886665555589999999999999999 7778899
Q ss_pred EEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCC----cEEEEecCCCCcccceeecCCCcceEEeeccCc
Q psy8285 407 KMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE----TISIWNCFPRDKKRKARQVGSGSSLEFAILKQP 479 (507)
Q Consensus 407 ~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (507)
.+.|+.++.....-+...+-|+.+.|+|+++++|-+--+| .|+++|+..++............+.+|-++...
T Consensus 426 ~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ry 502 (668)
T COG4946 426 WVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRY 502 (668)
T ss_pred EEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcE
Confidence 9999999987666666677899999999999999876554 689999998887766554444444444444443
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-11 Score=111.08 Aligned_cols=232 Identities=15% Similarity=0.122 Sum_probs=160.8
Q ss_pred cCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEE
Q psy8285 218 PRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCG 297 (507)
Q Consensus 218 ~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 297 (507)
|...++|.. ..||.+++||...++....+... +..+..++...|.+.....+.+...... .
T Consensus 3 ~~~~~~A~~-~~~g~l~iw~t~~~~~~~e~~p~--------------~~~s~t~~~~~w~L~~~~s~~k~~~~~~--~-- 63 (541)
T KOG4547|consen 3 PALDYFALS-TGDGRLRIWDTAKNQLQQEFAPI--------------ASLSGTCTYTKWGLSADYSPMKWLSLEK--A-- 63 (541)
T ss_pred chhheEeec-CCCCeEEEEEccCceeeeeeccc--------------hhccCcceeEEEEEEeccchHHHHhHHH--H--
Confidence 445788888 99999999999988877766531 1111222333344322221111111000 0
Q ss_pred EEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeeee--cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCee
Q psy8285 298 LKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNN--QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK 374 (507)
Q Consensus 298 ~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~ 374 (507)
..-+.|...++-|.. |.|.+|+...+ +....+ ..|.+.|.++.++.+-..+..++. |+.+..|+....+.+
T Consensus 64 ~~~s~~t~~lvlgt~~g~v~~ys~~~g---~it~~~st~~h~~~v~~~~~~~~~~ciyS~~a---d~~v~~~~~~~~~~~ 137 (541)
T KOG4547|consen 64 KKASLDTSMLVLGTPQGSVLLYSVAGG---EITAKLSTDKHYGNVNEILDAQRLGCIYSVGA---DLKVVYILEKEKVII 137 (541)
T ss_pred hhccCCceEEEeecCCccEEEEEecCC---eEEEEEecCCCCCcceeeecccccCceEecCC---ceeEEEEecccceee
Confidence 011224445666764 99999999887 444443 358999999999887755555554 999999999999988
Q ss_pred eeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCC-----CCEEE-EEeCCCc
Q psy8285 375 CHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPD-----QTCVA-AASADET 447 (507)
Q Consensus 375 ~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~-----~~~l~-s~~~dg~ 447 (507)
+.+... ..+.+++++|||+.+++ + .+.|++||+.+++.+..+.+|.++|++++|--+ |.++. +...+..
T Consensus 138 ~~~~~~~~~~~sl~is~D~~~l~~--a--s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~ 213 (541)
T KOG4547|consen 138 RIWKEQKPLVSSLCISPDGKILLT--A--SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG 213 (541)
T ss_pred eeeccCCCccceEEEcCCCCEEEe--c--cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccc
Confidence 888776 67899999999999998 3 468999999999999999999999999999876 55554 4455677
Q ss_pred EEEEecCCCCcccceeecCCCcceEEeeccC
Q psy8285 448 ISIWNCFPRDKKRKARQVGSGSSLEFAILKQ 478 (507)
Q Consensus 448 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (507)
+.+|-+................++..-.+..
T Consensus 214 i~~w~v~~~~kkks~~~sl~~~dipv~~ds~ 244 (541)
T KOG4547|consen 214 ITVWVVEKEDKKKSLSCSLTVPDIPVTSDSG 244 (541)
T ss_pred eeEEEEEcccccchhheeeccCCCCeEeccc
Confidence 9999988766666655555555544444433
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.1e-11 Score=100.20 Aligned_cols=225 Identities=13% Similarity=0.219 Sum_probs=152.8
Q ss_pred CCCEEEEEcCCeEEEEECCC-CceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC----CceeEEEEee
Q psy8285 175 YHDTLAVALDTSVYTWNTKT-NKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ----EERLIQKLRT 249 (507)
Q Consensus 175 ~~~~~~~~~~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~----~~~~~~~~~~ 249 (507)
.+++++++.|.++++|--.+ ++.-+.+... ...+++++.+.++...|+++ -.+|++.-+.+. .....+....
T Consensus 36 e~gv~~~s~drtvrv~lkrds~q~wpsI~~~--mP~~~~~~~y~~e~~~L~vg-~~ngtvtefs~sedfnkm~~~r~~~~ 112 (404)
T KOG1409|consen 36 EEGVISVSEDRTVRVWLKRDSGQYWPSIYHY--MPSPCSAMEYVSESRRLYVG-QDNGTVTEFALSEDFNKMTFLKDYLA 112 (404)
T ss_pred CCCeEEccccceeeeEEeccccccCchhhhh--CCCCceEeeeeccceEEEEE-EecceEEEEEhhhhhhhcchhhhhhh
Confidence 35699999999999996544 4443333222 56789999999999999998 899999888654 3345566678
Q ss_pred cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCC
Q psy8285 250 HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAK 326 (507)
Q Consensus 250 ~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~ 326 (507)
|..++..+-| ....+++.+.|..+.---.+.+...-...... .-.++.+.-. +...|. .|.|.+-.+... ..
T Consensus 113 h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~--~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~-~~ 187 (404)
T KOG1409|consen 113 HQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET--PASALQFDAL--YAFVGDHSGQITMLKLEQN-GC 187 (404)
T ss_pred hhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec--cCCCCceeeE--EEEecccccceEEEEEeec-CC
Confidence 9999999999 47788899988776543333332111111100 0011111111 333333 277766665542 23
Q ss_pred CCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee-eeecC-CCeEEEEECCCCCeEEEEeccCCC
Q psy8285 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC-HVKTD-SQVTSILWSEQYRELVTSHGKQDC 404 (507)
Q Consensus 327 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~ 404 (507)
.++.++.+|.+.+++++|.|.. .++.++.. |..+.+||+..++-+. .+.++ ..+..++.-+--+.+.+ .++||
T Consensus 188 ~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~--d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S--~~edg 262 (404)
T KOG1409|consen 188 QLITTFNGHTGEVTCLKWDPGQ-RLLFSGAS--DHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLIS--CGEDG 262 (404)
T ss_pred ceEEEEcCcccceEEEEEcCCC-cEEEeccc--cCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeee--ccCCC
Confidence 6888999999999999999966 56666654 9999999996655332 33333 66777777777778888 77899
Q ss_pred eEEEEeCC
Q psy8285 405 SLKMWEYP 412 (507)
Q Consensus 405 ~i~v~d~~ 412 (507)
.|.+|+++
T Consensus 263 ~i~~w~mn 270 (404)
T KOG1409|consen 263 GIVVWNMN 270 (404)
T ss_pred eEEEEecc
Confidence 99999874
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-11 Score=112.28 Aligned_cols=281 Identities=17% Similarity=0.258 Sum_probs=191.9
Q ss_pred ccccceeeeeeCCC-CEEEE-EcCCeEEEEECCCCce-------------eEEEecCCCCCCceEEEEEccCCCeEEEEe
Q psy8285 163 INDFYTSGLDWGYH-DTLAV-ALDTSVYTWNTKTNKT-------------QLLVEYPTYDNAYISCVAWKPRTTDLAVTN 227 (507)
Q Consensus 163 ~~~~~i~~~~~s~~-~~~~~-~~~~~i~iw~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 227 (507)
++...+++++|+.+ |++|+ |.||.+++..+.+... ....+++| |++.|.-+.|+.+.+.|-++
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~QKLTtS- 89 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQKLTTS- 89 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEecccccccccc-
Confidence 44566889999985 45554 6999999998765321 11234677 99999999999999999888
Q ss_pred CCCCcEEEEeCCCceeEEEEe--ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCC
Q psy8285 228 TCTEYIDLWHEQEERLIQKLR--THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN 303 (507)
Q Consensus 228 ~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 303 (507)
..+|.|.+|-+-.+.-...+. ...+-|.+++| +|..++....||.|.+=.++..+.--+.+.+ .....+.|++|
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D 167 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSED 167 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeeccc
Confidence 999999999987765433322 24556889999 7999999999999988777654421112221 22346889999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCCC----CCCeee----ecCCCCCeeEEEEc--------cCCCcEEEEEccCCCCeEEEE
Q psy8285 304 GRYLASGS-NNTVKIWDFRQLDA----KRPQVN----NQCHLSAVKAIAWC--------PWEPTLLATGGGICDQTVRLW 366 (507)
Q Consensus 304 ~~~l~~~~-d~~i~i~d~~~~~~----~~~~~~----~~~~~~~v~~~~~~--------~~~~~~~~~~~~~~d~~i~i~ 366 (507)
.+.++.+- +|.+.+||.+..-. ..+... +......+..+.|. |+-+.+.++-. +|.+++.
T Consensus 168 ~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~---nGr~QiM 244 (1189)
T KOG2041|consen 168 LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA---NGRMQIM 244 (1189)
T ss_pred HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc---Cceehhh
Confidence 99888777 59999999765310 011111 11122345566664 45555555554 8888888
Q ss_pred eCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccC--------CCeEEEEeCCCccEEEEeeccccceeEEEECCCCCE
Q psy8285 367 NSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQ--------DCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC 438 (507)
Q Consensus 367 d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~--------d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 438 (507)
.-.+......+.....+....|+++|..|+++ |.. .+.|++|. .-|+.+..++.....|++++|-..|-.
T Consensus 245 R~eND~~Pvv~dtgm~~vgakWnh~G~vLAvc-G~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLr 322 (1189)
T KOG2041|consen 245 RSENDPEPVVVDTGMKIVGAKWNHNGAVLAVC-GNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLR 322 (1189)
T ss_pred hhcCCCCCeEEecccEeecceecCCCcEEEEc-cCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceE
Confidence 76666655666666789999999999999985 321 13566665 457778888888888999999776655
Q ss_pred EEEEeCCCcEEEEec
Q psy8285 439 VAAASADETISIWNC 453 (507)
Q Consensus 439 l~s~~~dg~i~iw~~ 453 (507)
++.+- |+.|++=++
T Consensus 323 iA~Av-dsfiyfanI 336 (1189)
T KOG2041|consen 323 IAIAV-DSFIYFANI 336 (1189)
T ss_pred EEEEe-cceEEEEee
Confidence 54332 344444333
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-11 Score=119.12 Aligned_cols=193 Identities=16% Similarity=0.209 Sum_probs=146.4
Q ss_pred EEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCce---EEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeee
Q psy8285 256 AMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVV---CGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVN 331 (507)
Q Consensus 256 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~ 331 (507)
.+.|....++.++.+..+.+||.................. .-+.++++.-++++|+- +.|.+|+.... ..-..
T Consensus 94 ~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d---n~p~~ 170 (967)
T KOG0974|consen 94 KLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED---NKPIR 170 (967)
T ss_pred chhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc---CCcce
Confidence 3444788899999999999999987652222221111111 12334566667888884 99999999843 22236
Q ss_pred ecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee--eeecCCCeEEEEECCCCCeEEEEeccCCCeEEEE
Q psy8285 332 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC--HVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409 (507)
Q Consensus 332 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~ 409 (507)
+.+|.+.+..+.|+-+|.+++.++. |+++++|++.+.+... .+.+...+..++|.|+ ++++ +++|.+.++|
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~s~Sd---DRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t--~gedctcrvW 243 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIASVSD---DRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIIT--VGEDCTCRVW 243 (967)
T ss_pred ecccCCceEEEEEccCCcEEEEEec---CcceeeeecccccccCcccccccceeEEEEeccc--eeEE--eccceEEEEE
Confidence 7889999999999999965555443 9999999999988665 3445578999999998 7888 7899999999
Q ss_pred eCCCccEEEEeecccc-ceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 410 EYPRLHLIEELKIHQE-RILSAVLSPDQTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 410 d~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
+. .++.+..+.+|.. .|+.++..++...++|++.|+.+++|++......
T Consensus 244 ~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 244 GV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred ec-ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence 75 4556668888864 5999999999999999999999999999765443
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-10 Score=97.65 Aligned_cols=270 Identities=17% Similarity=0.195 Sum_probs=181.9
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCceEEEEEcc---CCC-eEEEEeCCCCcEEEEeCCCceeEEEEeecC---c---c
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKP---RTT-DLAVTNTCTEYIDLWHEQEERLIQKLRTHM---H---Q 253 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~-~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~---~---~ 253 (507)
.|.+.+|++.+.+....-.+.......+..|.|.. ++. .++.+ ...|.|.++..........+++-. - .
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a-~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDA-HARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeec-cccceEEEEeeccceeeeeecccchhhhhhee
Confidence 46788898887665442222111456677888863 344 45555 789999999876655544444311 1 2
Q ss_pred EEEEEe--eCCEEEEEecCCeEEEEECCCCC-cCceeeecCCCceEEEEEcCC-CCEEEEEeC-CcEEEEEcCCCCCCCC
Q psy8285 254 VIAMCW--NGNLLSCGTIGGNILHYDVRTHS-DYPTAITREGDVVCGLKWSPN-GRYLASGSN-NTVKIWDFRQLDAKRP 328 (507)
Q Consensus 254 v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~d-~~i~i~d~~~~~~~~~ 328 (507)
..++.| .+..++++..+|.+.+-+..... +..+..+.|.-+..-..|+.. .+++.+|+| +.+..||++.++ ...
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i 202 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFI 202 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-cee
Confidence 344555 47789999999999855554432 123467889999998999864 467888885 999999999542 122
Q ss_pred eeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC-CCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEE
Q psy8285 329 QVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM-NGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLK 407 (507)
Q Consensus 329 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~ 407 (507)
....+-|...|.++.-+|..+..+++|+ +|-.|++||.+ -++++..-...+.|..+.++|.-...+.+ ...-+-.+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGs--YDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~-~CMh~G~k 279 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGS--YDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLA-ACMHNGAK 279 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEec--cccceeeeehhcccCccccCccccceEEEEecchhhhHHHH-HHHhcCce
Confidence 2334568899999999998888888887 59999999998 56777776667899999999975422221 22334466
Q ss_pred EEeCCCc--c---EEEEeeccccceeEEEECCCCCEEEEEe-CCCcEE-EEecCCCCc
Q psy8285 408 MWEYPRL--H---LIEELKIHQERILSAVLSPDQTCVAAAS-ADETIS-IWNCFPRDK 458 (507)
Q Consensus 408 v~d~~~~--~---~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~dg~i~-iw~~~~~~~ 458 (507)
|-+.... + .+...+.|.+-...-.|......|+|++ .|..++ +|-.-++++
T Consensus 280 i~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 280 ILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred EEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCCc
Confidence 6665443 3 3445567888788888866667788876 466644 776555443
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.5e-10 Score=104.69 Aligned_cols=185 Identities=16% Similarity=0.186 Sum_probs=146.2
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEc------c--------------CCCeEEEEeCCCCcEEEEe
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWK------P--------------RTTDLAVTNTCTEYIDLWH 237 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~------~--------------~~~~l~~~~~~dg~i~iwd 237 (507)
+.....||.+++|+...++..+-+.-...-.+..++..|. | +...++.+ ...|.|.+|+
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlg-t~~g~v~~ys 86 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLG-TPQGSVLLYS 86 (541)
T ss_pred EeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEee-cCCccEEEEE
Confidence 3334589999999999887654433211134455565552 1 22345555 8999999999
Q ss_pred CCCceeEEEEe--ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCC
Q psy8285 238 EQEERLIQKLR--THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNN 313 (507)
Q Consensus 238 ~~~~~~~~~~~--~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~ 313 (507)
+..++....+. .|.+.|.++.+ +-..|.+++.|+.+..|+..... ...........+.+++.+||++.+++++ +
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-~~~~~~~~~~~~~sl~is~D~~~l~~as-~ 164 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-IIRIWKEQKPLVSSLCISPDGKILLTAS-R 164 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-eeeeeccCCCccceEEEcCCCCEEEecc-c
Confidence 99999888887 49999999998 46689999999999999998875 5566677778899999999999999988 8
Q ss_pred cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccC-----CCcEEEEEccCCCCeEEEEeCCC
Q psy8285 314 TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW-----EPTLLATGGGICDQTVRLWNSMN 370 (507)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~d~~i~i~d~~~ 370 (507)
+|++||+++. +.+..+.+|.++|.++.|-.. |.+++.+... +.-+.+|-...
T Consensus 165 ~ik~~~~~~k---evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~--~r~i~~w~v~~ 221 (541)
T KOG4547|consen 165 QIKVLDIETK---EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA--ERGITVWVVEK 221 (541)
T ss_pred eEEEEEccCc---eEEEEecCCCcceEEEEEEEeccccccceeeecccc--ccceeEEEEEc
Confidence 9999999998 899999999999999999887 7778877764 67777776544
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-09 Score=111.71 Aligned_cols=276 Identities=14% Similarity=0.241 Sum_probs=175.9
Q ss_pred ceeeeeeCCCC--EEEEEcCCeEEEE----ECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC
Q psy8285 167 YTSGLDWGYHD--TLAVALDTSVYTW----NTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~~~~i~iw----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
.|.++++-++. ++.+..+|.|.+. +..+.....+-. -+..|.+++||||+..|+.+ +.++++.+....
T Consensus 77 ~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~----vd~GI~a~~WSPD~Ella~v-T~~~~l~~mt~~- 150 (928)
T PF04762_consen 77 KIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS----VDSGILAASWSPDEELLALV-TGEGNLLLMTRD- 150 (928)
T ss_pred cEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE----EcCcEEEEEECCCcCEEEEE-eCCCEEEEEecc-
Confidence 35667777764 7777889999999 666666555554 45689999999999999999 888888876421
Q ss_pred ceeE------------------------EEEee------------------------cCccEEEEEe--eCCEEEEEec-
Q psy8285 241 ERLI------------------------QKLRT------------------------HMHQVIAMCW--NGNLLSCGTI- 269 (507)
Q Consensus 241 ~~~~------------------------~~~~~------------------------~~~~v~~~~~--~~~~l~~~~~- 269 (507)
.+.+ ..+.+ ....-..++| ||.++|+.+-
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 1111 11110 2224467889 8999998875
Q ss_pred --C---CeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe---C-CcEEEEEcCCCCCCCCeeeecCCCCCee
Q psy8285 270 --G---GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS---N-NTVKIWDFRQLDAKRPQVNNQCHLSAVK 340 (507)
Q Consensus 270 --d---g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~ 340 (507)
. ..++||+-+. . .......-.+--.+++|-|.|++||+.. + ..|.+|.-+.....+-...+......|.
T Consensus 231 ~~~~~~R~iRVy~ReG-~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 231 PETGSRRVIRVYSREG-E-LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred cCCCceeEEEEECCCc-e-EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceee
Confidence 2 4789998762 2 2222222223335689999999999986 2 5677776554322222222223566899
Q ss_pred EEEEccCCCcEEEEEccCCCCeEEEEeCCCCC--eeeee--ecCCCeEEEEECCCCCe-EEEEeccCCCeEEEEeC----
Q psy8285 341 AIAWCPWEPTLLATGGGICDQTVRLWNSMNGK--EKCHV--KTDSQVTSILWSEQYRE-LVTSHGKQDCSLKMWEY---- 411 (507)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~--~~~~~i~~~~~s~~~~~-l~~~~g~~d~~i~v~d~---- 411 (507)
.+.|++++. +++.-- ...|++|-..+-. ..+.+ .....+..+.|+|...+ |.+ ...+|.+..+++
T Consensus 309 ~l~Wn~ds~-iLAv~~---~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v--~t~~g~~~~~~~~~~v 382 (928)
T PF04762_consen 309 ELAWNSDSE-ILAVWL---EDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHV--LTSNGQYEIYDFAWDV 382 (928)
T ss_pred EEEECCCCC-EEEEEe---cCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEE--EecCCcEEEEEEEEEE
Confidence 999999985 555544 4449999987753 22222 33344566999997554 333 334455544433
Q ss_pred CCc--------cEEEEee-----------------------ccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 412 PRL--------HLIEELK-----------------------IHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 412 ~~~--------~~~~~~~-----------------------~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
..+ ..+..+. .-..+|.+++|++++..+++-..||.|.+|.....
T Consensus 383 ~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 383 SRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred EecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 110 0011110 12467999999999988999999999999996544
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.8e-11 Score=100.01 Aligned_cols=241 Identities=13% Similarity=0.224 Sum_probs=169.8
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce-----eEEEEeecC------------ccEEEEEe----eCCEEE
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER-----LIQKLRTHM------------HQVIAMCW----NGNLLS 265 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~----~~~~l~ 265 (507)
....|+++.|...|.||++| ...|.|.+|.-.... ....+++|. ..|..+.| ....++
T Consensus 25 ead~ItaVefd~tg~YlatG-DkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDETGLYLATG-DKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccccceEeec-CCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 45679999999999999999 888999999765432 233455554 34678888 244677
Q ss_pred EEecCCeEEEEECCCCCc-----------------------------------------Cce-eeecCCCceEEEEEcCC
Q psy8285 266 CGTIGGNILHYDVRTHSD-----------------------------------------YPT-AITREGDVVCGLKWSPN 303 (507)
Q Consensus 266 ~~~~dg~i~i~d~~~~~~-----------------------------------------~~~-~~~~~~~~v~~~~~~~~ 303 (507)
..+.|.+|++|.+..... +.+ ....|...+.++.|+.|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 778899999999865410 000 11346667889999999
Q ss_pred CCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCC-----CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe-----
Q psy8285 304 GRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHL-----SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE----- 373 (507)
Q Consensus 304 ~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~----- 373 (507)
...++++.|-.|.+|++......-.+..+..|. .-|++..|+|....++.-++. .|.|++-|++....
T Consensus 184 ~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS--kG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 184 KETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS--KGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred hheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC--CCcEEehhhhhhhhccCch
Confidence 999999999999999998764444444454443 357899999987776665554 89999999984321
Q ss_pred -eee--eec---------CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc-cEEEEeeccc------------cce-
Q psy8285 374 -KCH--VKT---------DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL-HLIEELKIHQ------------ERI- 427 (507)
Q Consensus 374 -~~~--~~~---------~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~-~~~~~~~~~~------------~~i- 427 (507)
+.. +.+ -..|..+.|+++|+++++ - .=.+|+|||++.. .++.++.-|. ..|
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls--R-dyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaif 338 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS--R-DYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIF 338 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE--e-ccceEEEEecccccCCceeechHHHHHHHHHhhhhcccee
Confidence 111 110 146888999999999998 2 3468999999764 5666664442 122
Q ss_pred --eEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 428 --LSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 428 --~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
..+.||-|...+.+|+.....-||-.
T Consensus 339 dkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 339 DKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred eeEEEEecCCcccccccccccceeeecc
Confidence 34778888888888887777777663
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.7e-11 Score=112.56 Aligned_cols=280 Identities=14% Similarity=0.217 Sum_probs=192.0
Q ss_pred ceeeeeeCCCC--EEEEEcCCeEEEEECCCC-cee-EEEecCCCCCCceEEEEEccCC--CeEEEEeCCCCcEEEEeCCC
Q psy8285 167 YTSGLDWGYHD--TLAVALDTSVYTWNTKTN-KTQ-LLVEYPTYDNAYISCVAWKPRT--TDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~-~~~-~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~dg~i~iwd~~~ 240 (507)
.++++..+|.| ++.++ .-.+++.|+... .+. .+..+ ..-.|-...|+|.. .+-++. .....-.+|++..
T Consensus 26 ~~~a~si~p~grdi~lAs-r~gl~i~dld~p~~ppr~l~h~---tpw~vad~qws~h~a~~~wiVs-ts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 26 GFNAVSINPSGRDIVLAS-RQGLYIIDLDDPFTPPRWLHHI---TPWQVADVQWSPHPAKPYWIVS-TSNQKAIIWNLAK 100 (1081)
T ss_pred cccceeeccccchhhhhh-hcCeEEEeccCCCCCceeeecc---CcchhcceecccCCCCceeEEe-cCcchhhhhhhhc
Confidence 34566677765 33333 334666676552 222 22222 34457788888754 555555 5677778898754
Q ss_pred c---eeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCC-CEEEEEeCC
Q psy8285 241 E---RLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNG-RYLASGSNN 313 (507)
Q Consensus 241 ~---~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~d~ 313 (507)
. .....+-+|...++.+.| +...+++++-|-.+..||+++...+......-......++|+... ..+|+...+
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~ 180 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN 180 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC
Confidence 3 233455689999999999 477999999999999999998876666666666677789998754 445554468
Q ss_pred cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC--CeeeeeecCCCeEEEEECCC
Q psy8285 314 TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG--KEKCHVKTDSQVTSILWSEQ 391 (507)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--~~~~~~~~~~~i~~~~~s~~ 391 (507)
.|++||++.+ ..++..+++|...|+.+.|...-...+.+++. |++|++||.... +..+......++..-.+-|-
T Consensus 181 ~i~vwd~r~g--s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~--d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pf 256 (1081)
T KOG0309|consen 181 DIFVWDLRKG--STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN--DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPF 256 (1081)
T ss_pred ceEEEeccCC--CcceEEecccceeeehHHHhhhhhhhhcccCC--CCceeeecccccccccceeccccCcceecccccc
Confidence 9999999987 36788888899999999998654445555543 999999998654 33445555567777777776
Q ss_pred CCeEEEEeccCCCeEEEEeCC---------C-ccEEEEeeccccceeEEEECCCC----------CEEEEEeCCCcEEEE
Q psy8285 392 YRELVTSHGKQDCSLKMWEYP---------R-LHLIEELKIHQERILSAVLSPDQ----------TCVAAASADETISIW 451 (507)
Q Consensus 392 ~~~l~~~~g~~d~~i~v~d~~---------~-~~~~~~~~~~~~~i~~~~~s~~~----------~~l~s~~~dg~i~iw 451 (507)
|.-.+.--.-.++.+.+++.+ + .++++.+.||...|....|-..+ -.|+|-+.|..+++|
T Consensus 257 g~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 257 GEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred CceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 554333101112244444432 2 46889999999988877775422 279999999999999
Q ss_pred ecCC
Q psy8285 452 NCFP 455 (507)
Q Consensus 452 ~~~~ 455 (507)
-+.+
T Consensus 337 pI~~ 340 (1081)
T KOG0309|consen 337 PIDS 340 (1081)
T ss_pred eccH
Confidence 9874
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.3e-09 Score=99.44 Aligned_cols=215 Identities=10% Similarity=-0.017 Sum_probs=134.9
Q ss_pred cEEEEeCCCceeEEEEeecCccEEEEEe--eCCE-EEEEec---CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC
Q psy8285 232 YIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNL-LSCGTI---GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR 305 (507)
Q Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~-l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 305 (507)
.|.+-|..... .+.+.... ......| |++. ++..+. +..|+++|+.+++ ...+....+......|+|||+
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~--~~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK--KEKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc--EEEEecCCCcEEeeEECCCCC
Confidence 55555554333 33333333 6667777 6764 554433 3569999998765 334444555666788999998
Q ss_pred EEEEEe--C--CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC
Q psy8285 306 YLASGS--N--NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS 381 (507)
Q Consensus 306 ~l~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 381 (507)
.++... + ..|+++|+..+ ....+..+........|+|||+.++.+........|.++|+.+++..+......
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g----~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~ 321 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTK----TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK 321 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCC----cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC
Confidence 877654 2 67888888765 233444344334567899999988887753223378888998887644333222
Q ss_pred CeEEEEECCCCCeEEEEeccC------C-CeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCC-C--cEEEE
Q psy8285 382 QVTSILWSEQYRELVTSHGKQ------D-CSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASAD-E--TISIW 451 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~------d-~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-g--~i~iw 451 (507)
. ...|+|||++|+.+.... . ..|.+.|+.+++. ..+... .......|+|||+.|+..+.+ + .+.+.
T Consensus 322 ~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~ 397 (419)
T PRK04043 322 N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGII 397 (419)
T ss_pred c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEE
Confidence 2 348999999998863221 1 3788899887764 334332 233468999999988766543 2 35666
Q ss_pred ecCCCCc
Q psy8285 452 NCFPRDK 458 (507)
Q Consensus 452 ~~~~~~~ 458 (507)
++.....
T Consensus 398 ~l~g~~~ 404 (419)
T PRK04043 398 RLNYNKS 404 (419)
T ss_pred ecCCCee
Confidence 6654433
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-10 Score=98.50 Aligned_cols=244 Identities=17% Similarity=0.292 Sum_probs=144.2
Q ss_pred cccceeeeeeCCCC-EEEEEcCCeEEEEECCCC-ceeEEEecCCC----CCCceEEEEEccCCCeEEEEeCCCCcEEEEe
Q psy8285 164 NDFYTSGLDWGYHD-TLAVALDTSVYTWNTKTN-KTQLLVEYPTY----DNAYISCVAWKPRTTDLAVTNTCTEYIDLWH 237 (507)
Q Consensus 164 ~~~~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~-~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd 237 (507)
+.+.|+++..+.|. .+..+.|=.|.+|+++-. +.-.+.++... -..-|++..|+|....+++-++..|+|++-|
T Consensus 163 HtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcD 242 (433)
T KOG1354|consen 163 HTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCD 242 (433)
T ss_pred ceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEee
Confidence 46779999999988 667778889999998642 22233333320 1345889999998765555448999999999
Q ss_pred CCCceeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEE
Q psy8285 238 EQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKI 317 (507)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i 317 (507)
++...+ -|..-+++...........+..--..|..+.|+++|+++++-.--+|++
T Consensus 243 mR~~aL-------------------------Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~ 297 (433)
T KOG1354|consen 243 MRQSAL-------------------------CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKL 297 (433)
T ss_pred chhhhh-------------------------hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEE
Confidence 875321 0122222222221112233344456788999999999999877799999
Q ss_pred EEcCCCCCCCCeeeecCCCC---------------CeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee-eeecCC
Q psy8285 318 WDFRQLDAKRPQVNNQCHLS---------------AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC-HVKTDS 381 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~~---------------~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-~~~~~~ 381 (507)
||+... .+++.+..-|.. .-..++|+.++. .+.+|+ +....++|++..|.... ++....
T Consensus 298 wD~nme--~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~-~v~TGs--y~n~frvf~~~~gsk~d~tl~asr 372 (433)
T KOG1354|consen 298 WDLNME--AKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS-YVMTGS--YNNVFRVFNLARGSKEDFTLEASR 372 (433)
T ss_pred Eecccc--CCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc-eEeccc--ccceEEEecCCCCcceeecccccc
Confidence 999654 255655554431 124678888774 444544 69999999977664322 222111
Q ss_pred ---CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEE
Q psy8285 382 ---QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIW 451 (507)
Q Consensus 382 ---~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw 451 (507)
....+ .....++. ++......++ .-.+. ....|...+|+|..+.+|.+..+ .++||
T Consensus 373 ~~~~~~~~----~k~~~V~~-~g~r~~~~~~-------vd~ld-f~kkilh~aWhp~en~ia~aatn-nlyif 431 (433)
T KOG1354|consen 373 KNMKPRKV----LKLRLVSS-SGKRKRDEIS-------VDALD-FRKKILHTAWHPKENSIAVAATN-NLYIF 431 (433)
T ss_pred cCCccccc----ccceeeec-CCCccccccc-------cchhh-hhhHHHhhccCCccceeeeeecC-ceEEe
Confidence 11111 11122222 3322221111 01111 23456778899999888877655 45555
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.4e-09 Score=98.95 Aligned_cols=264 Identities=9% Similarity=0.001 Sum_probs=166.1
Q ss_pred CEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEE
Q psy8285 177 DTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIA 256 (507)
Q Consensus 177 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 256 (507)
.+++++.++.|+.+|..+|+..-...+.+ .....+. .++..++++ +.+|.+..+|..+|+.+............
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~---~~~~~p~--v~~~~v~v~-~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 140 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDE---RLSGGVG--ADGGLVFVG-TEKGEVIALDAEDGKELWRAKLSSEVLSP 140 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCC---CcccceE--EcCCEEEEE-cCCCEEEEEECCCCcEeeeeccCceeecC
Confidence 36777788999999999999876666543 1111222 246678877 88999999999999987765533222222
Q ss_pred EEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCce-----EEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCee
Q psy8285 257 MCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVV-----CGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQV 330 (507)
Q Consensus 257 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~ 330 (507)
....+..++.++.++.++.+|.++++.. .......... .+.... + ..++.+. ++.+..+|.+++ +.+.
T Consensus 141 p~v~~~~v~v~~~~g~l~a~d~~tG~~~-W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG---~~~W 214 (377)
T TIGR03300 141 PLVANGLVVVRTNDGRLTALDAATGERL-WTYSRVTPALTLRGSASPVIA-D-GGVLVGFAGGKLVALDLQTG---QPLW 214 (377)
T ss_pred CEEECCEEEEECCCCeEEEEEcCCCcee-eEEccCCCceeecCCCCCEEE-C-CEEEEECCCCEEEEEEccCC---CEee
Confidence 2235667778888999999999887632 2222111111 111111 3 3555565 589999999887 3332
Q ss_pred eecCC-C---C---C---e-eEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEe
Q psy8285 331 NNQCH-L---S---A---V-KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSH 399 (507)
Q Consensus 331 ~~~~~-~---~---~---v-~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 399 (507)
..... . . . + ....+ .+..+++.+. ++.++.||..+++.+....... ..... ..+..+++
T Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~---~g~l~a~d~~tG~~~W~~~~~~-~~~p~--~~~~~vyv-- 284 (377)
T TIGR03300 215 EQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSY---QGRVAALDLRSGRVLWKRDASS-YQGPA--VDDNRLYV-- 284 (377)
T ss_pred eeccccCCCCCchhhhhccCCccEE--ECCEEEEEEc---CCEEEEEECCCCcEEEeeccCC-ccCce--EeCCEEEE--
Confidence 21100 0 0 0 0 11112 2335666554 8999999999998877665322 12222 24667777
Q ss_pred ccCCCeEEEEeCCCccEEEEeecccc-ceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceee
Q psy8285 400 GKQDCSLKMWEYPRLHLIEELKIHQE-RILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQ 464 (507)
Q Consensus 400 g~~d~~i~v~d~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 464 (507)
++.+|.++.+|..+++.+........ ....... .+..|++++.+|.|+++|..+++.....+.
T Consensus 285 ~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 285 TDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT 348 (377)
T ss_pred ECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 67899999999999988766532111 1222222 467889999999999999999888776543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.5e-10 Score=105.13 Aligned_cols=237 Identities=13% Similarity=0.215 Sum_probs=167.3
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce---------------eEEEEeecCccEEEEEe--eCCEEEEEec
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER---------------LIQKLRTHMHQVIAMCW--NGNLLSCGTI 269 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~---------------~~~~~~~~~~~v~~~~~--~~~~l~~~~~ 269 (507)
......|++|+.+..+++++ +.||.+++..+.+.. .-+++.+|...|.-+.| +.+.|-+...
T Consensus 13 nnvkL~c~~WNke~gyIAcg-G~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACG-GADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEec-cccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 45678999999999999999 999999999876531 12467789999999999 4678999999
Q ss_pred CCeEEEEECCCCCcCcee-eecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccC
Q psy8285 270 GGNILHYDVRTHSDYPTA-ITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW 347 (507)
Q Consensus 270 dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 347 (507)
+|.|.+|-+-.++-.... -...++.|.+++|+.||..++... ||.|.+=.++.. .+....-.......+.|++|
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGN----RIwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGN----RIWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccc----eecchhcchheccceeeccc
Confidence 999999999877633222 234567789999999999988887 688877766543 11111112223457899999
Q ss_pred CCcEEEEEccCCCCeEEEEeCCCCC-------eeeeeec-----CCCeEEEEEC--------CCCCeEEEEeccCCCeEE
Q psy8285 348 EPTLLATGGGICDQTVRLWNSMNGK-------EKCHVKT-----DSQVTSILWS--------EQYRELVTSHGKQDCSLK 407 (507)
Q Consensus 348 ~~~~~~~~~~~~d~~i~i~d~~~~~-------~~~~~~~-----~~~i~~~~~s--------~~~~~l~~~~g~~d~~i~ 407 (507)
.+.+++.-. +|.+++||....- +.....+ +..+..+.|. |+...+++ +..+|.+.
T Consensus 168 ~~~~Lf~~a---nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lav--cy~nGr~Q 242 (1189)
T KOG2041|consen 168 LEQALFKKA---NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV--CYANGRMQ 242 (1189)
T ss_pred HHHHHhhhc---CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEE--EEcCceeh
Confidence 877766443 8999999976431 1111111 1235556663 57888888 67889888
Q ss_pred EEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCC---------CcEEEEecC
Q psy8285 408 MWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASAD---------ETISIWNCF 454 (507)
Q Consensus 408 v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d---------g~i~iw~~~ 454 (507)
|..-.+......+.. .-.|..+.|+++|..|+.++.| +.|++|...
T Consensus 243 iMR~eND~~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~ 297 (1189)
T KOG2041|consen 243 IMRSENDPEPVVVDT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY 297 (1189)
T ss_pred hhhhcCCCCCeEEec-ccEeecceecCCCcEEEEccCcccccCccccceEEEeccc
Confidence 876544433333332 3568899999999999998864 356777654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.9e-09 Score=98.51 Aligned_cols=230 Identities=8% Similarity=0.014 Sum_probs=139.6
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCe-EEEEeCC--CCcEEEEeCCCceeEEEEeecCccEEEEEe-
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTD-LAVTNTC--TEYIDLWHEQEERLIQKLRTHMHQVIAMCW- 259 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~- 259 (507)
...|.+-|....+...+.. . +......|+|+|+. ++..... +..|.++|+.+++...... ..+......|
T Consensus 168 ~~~l~~~d~dg~~~~~~~~----~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~S 241 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVK----G-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVS 241 (419)
T ss_pred cceEEEECCCCCceeEEcc----C-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEEC
Confidence 3477777775554333322 3 37889999999985 6654122 3579999998876654443 4444445566
Q ss_pred -eCCEEEEE-ecC--CeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC----CcEEEEEcCCCCCCCCeee
Q psy8285 260 -NGNLLSCG-TIG--GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN----NTVKIWDFRQLDAKRPQVN 331 (507)
Q Consensus 260 -~~~~l~~~-~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d----~~i~i~d~~~~~~~~~~~~ 331 (507)
||+.++.. +.+ ..|.++|+.++. ...+..+........|+|||+.|+..++ ..|++.|+..+ .. ..
T Consensus 242 PDG~~la~~~~~~g~~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g---~~-~r 315 (419)
T PRK04043 242 KDGSKLLLTMAPKGQPDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG---SV-EQ 315 (419)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC---Ce-Ee
Confidence 78766544 333 468888887764 3344444433445689999998888774 26888888765 22 12
Q ss_pred ecCCCCCeeEEEEccCCCcEEEEEccCC------CCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccC-CC
Q psy8285 332 NQCHLSAVKAIAWCPWEPTLLATGGGIC------DQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQ-DC 404 (507)
Q Consensus 332 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~-d~ 404 (507)
+..... ....|+|+|+.++.+..... ...|.+.|+.+++... +..........|+|||+.|+.++... ..
T Consensus 316 lt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~~~~~p~~SPDG~~I~f~~~~~~~~ 392 (419)
T PRK04043 316 VVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANGVNQFPRFSSDGGSIMFIKYLGNQS 392 (419)
T ss_pred CccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCCCcCCeEECCCCCEEEEEEccCCcE
Confidence 211111 13489999998888775311 1478889998886543 33333334689999999988853221 22
Q ss_pred eEEEEeCCCccEEEEeeccccceeE
Q psy8285 405 SLKMWEYPRLHLIEELKIHQERILS 429 (507)
Q Consensus 405 ~i~v~d~~~~~~~~~~~~~~~~i~~ 429 (507)
.+.+.++... ....+....+.+..
T Consensus 393 ~L~~~~l~g~-~~~~l~~~~g~~~~ 416 (419)
T PRK04043 393 ALGIIRLNYN-KSFLFPLKVGKIQS 416 (419)
T ss_pred EEEEEecCCC-eeEEeecCCCccCC
Confidence 4667776543 33334333344443
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-10 Score=113.32 Aligned_cols=191 Identities=19% Similarity=0.300 Sum_probs=147.9
Q ss_pred ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEE------EEEeeCCEEEEEecCCeEEEEECCCCCc
Q psy8285 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVI------AMCWNGNLLSCGTIGGNILHYDVRTHSD 283 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~------~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 283 (507)
.|....+.-+...++.+ +.+..+.+||...+.....+........ ..+++.-++++|+.-+.|.+|+....+
T Consensus 89 wi~g~~l~~e~k~i~l~-~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn- 166 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALV-TSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN- 166 (967)
T ss_pred cccccchhhhcceEEEE-EcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC-
Confidence 34445555667788888 8899999999988777666654332221 112246689999999999999998544
Q ss_pred CceeeecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCe-eeecCCCCCeeEEEEccCCCcEEEEEccCCCC
Q psy8285 284 YPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQ-VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ 361 (507)
Q Consensus 284 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~ 361 (507)
....+.+|.+.|..+.++.||+++++.+| ..+++|++.+. +.. ....+|..+|..+.|.|. .+++.++ |.
T Consensus 167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~---~~~~~~~fgHsaRvw~~~~~~n---~i~t~ge--dc 238 (967)
T KOG0974|consen 167 KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSR---EVLGCTGFGHSARVWACCFLPN---RIITVGE--DC 238 (967)
T ss_pred CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccc---cccCcccccccceeEEEEeccc---eeEEecc--ce
Confidence 44478999999999999999999999995 99999999987 333 366679999999999996 4444444 99
Q ss_pred eEEEEeCCCCCeeeeeecC--CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 362 TVRLWNSMNGKEKCHVKTD--SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 362 ~i~i~d~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
+.++|+. +++.+..+..+ ..+..++..++...+++ +..|+.+++|++..
T Consensus 239 tcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT--~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 239 TCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVT--GGNDSTLKLWDLNG 289 (967)
T ss_pred EEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEe--eccCcchhhhhhhc
Confidence 9999975 44555566665 57999999998888888 88999999999743
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.8e-09 Score=108.95 Aligned_cols=236 Identities=8% Similarity=0.069 Sum_probs=155.1
Q ss_pred EEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee-c-------------CccEEEEEe--eCCEEEEEe-cCCeEE
Q psy8285 212 SCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT-H-------------MHQVIAMCW--NGNLLSCGT-IGGNIL 274 (507)
Q Consensus 212 ~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~-~-------------~~~v~~~~~--~~~~l~~~~-~dg~i~ 274 (507)
..+++++.+..++++.+.++.|+++|... +.+..+.. . -.....+++ +++.|+++. ..+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 46788876655666547888999999764 44433332 1 112466777 356555554 456789
Q ss_pred EEECCCCCcCceeeecC-----------------CCceEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCCCCCeeeecC-
Q psy8285 275 HYDVRTHSDYPTAITRE-----------------GDVVCGLKWSPNG-RYLASGS-NNTVKIWDFRQLDAKRPQVNNQC- 334 (507)
Q Consensus 275 i~d~~~~~~~~~~~~~~-----------------~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~- 334 (507)
++|..++. ...+.+. -..-..++++|++ .++++.. ++.|++||...+ .+..+.+
T Consensus 650 ~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g----~v~~~~G~ 723 (1057)
T PLN02919 650 EIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDG----VTRVFSGD 723 (1057)
T ss_pred EEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCC----eEEEEecC
Confidence 99987643 2222110 1123579999954 4445444 499999998765 1111110
Q ss_pred --------------CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec---------------------
Q psy8285 335 --------------HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT--------------------- 379 (507)
Q Consensus 335 --------------~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--------------------- 379 (507)
.......++++|++..++++..+ ++.|++||+.++........
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~--n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~ 801 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE--SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEV 801 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCCCEEEEEECC--CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhh
Confidence 11245679999999878887765 89999999987653211100
Q ss_pred -CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee-------------ccccceeEEEECCCCCEEEEEeCC
Q psy8285 380 -DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK-------------IHQERILSAVLSPDQTCVAAASAD 445 (507)
Q Consensus 380 -~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~-------------~~~~~i~~~~~s~~~~~l~s~~~d 445 (507)
......++++++|..+++ ...++.|++||..++....... +.-.....++++++|+.+++-+.+
T Consensus 802 ~l~~P~Gvavd~dG~LYVA--Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N 879 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVA--DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN 879 (1057)
T ss_pred hccCCceeeEeCCCcEEEE--ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence 013468899999987777 6789999999998766543221 111246789999999988888899
Q ss_pred CcEEEEecCCCCc
Q psy8285 446 ETISIWNCFPRDK 458 (507)
Q Consensus 446 g~i~iw~~~~~~~ 458 (507)
+.|++||+.+++.
T Consensus 880 n~Irvid~~~~~~ 892 (1057)
T PLN02919 880 SLIRYLDLNKGEA 892 (1057)
T ss_pred CEEEEEECCCCcc
Confidence 9999999988764
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-10 Score=106.48 Aligned_cols=281 Identities=12% Similarity=0.121 Sum_probs=189.3
Q ss_pred eeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCC------------CeEEEEeCCCCcEEE
Q psy8285 168 TSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRT------------TDLAVTNTCTEYIDL 235 (507)
Q Consensus 168 i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~~dg~i~i 235 (507)
-++++|+|.|++|.+....|.+-|..+-+..+.+.. |...|+.+.|.|.. -.||++ ...|.|.+
T Consensus 18 ~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie~---h~s~V~~VrWap~~~p~~llS~~~~~lliAsa-D~~GrIil 93 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIEL---HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASA-DISGRIIL 93 (1062)
T ss_pred ccccccCccceEEEecCceEEEEehhhhhhhhcccc---CccceeEEEeccCCCchhccCccccceeEEec-cccCcEEE
Confidence 457999999999999999999999988887777666 88999999998732 234555 88999999
Q ss_pred EeCCCceeEEEEeecCccEEEEEe-----eC-CEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC-CCCEEE
Q psy8285 236 WHEQEERLIQKLRTHMHQVIAMCW-----NG-NLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP-NGRYLA 308 (507)
Q Consensus 236 wd~~~~~~~~~~~~~~~~v~~~~~-----~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 308 (507)
||...+..+..++.|..++..++| +. ..|++-.....+.+|+..+++.. -..........|+.+.| |.+.+.
T Consensus 94 ~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~-Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 94 VDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKF-WKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCcee-eccccCCcceeeeeeCCCCcceEE
Confidence 999999888899999999999999 23 67777787889999999998733 33333345667788888 445444
Q ss_pred EE-eCCcEEEEEcCCCCC----CCCeeeecCCCC-------------------------CeeEEEEccCCCcEEEEEccC
Q psy8285 309 SG-SNNTVKIWDFRQLDA----KRPQVNNQCHLS-------------------------AVKAIAWCPWEPTLLATGGGI 358 (507)
Q Consensus 309 ~~-~d~~i~i~d~~~~~~----~~~~~~~~~~~~-------------------------~v~~~~~~~~~~~~~~~~~~~ 358 (507)
.- +.|.+.+-+.-.... .+.++....|.. ..-.++|+|.-++++...-
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~-- 250 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF-- 250 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe--
Confidence 43 357666665432210 011111111111 1224677887777776655
Q ss_pred CCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCC--CeEEEEeccCCCeEEEEeCCC----------------ccEEEE
Q psy8285 359 CDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQY--RELVTSHGKQDCSLKMWEYPR----------------LHLIEE 419 (507)
Q Consensus 359 ~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~--~~l~~~~g~~d~~i~v~d~~~----------------~~~~~~ 419 (507)
.+.+.++|++-..++.....+ +.+.-+.+-|++ ..|++ .-.||.+.+|-.+. +++...
T Consensus 251 -prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfc--lH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~ 327 (1062)
T KOG1912|consen 251 -PRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFC--LHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHV 327 (1062)
T ss_pred -ccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEE--EecCCeEEEEEeeccCccccccchhhccccccceEE
Confidence 889999999988888887766 445566666665 45666 77899999997554 111111
Q ss_pred eecc-ccceeEEEECCC-CCEEEEEeCCCcEEEEecCCCCc
Q psy8285 420 LKIH-QERILSAVLSPD-QTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 420 ~~~~-~~~i~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
+..- .-.+......|. ...++.--.+|.+.+|.+.+++.
T Consensus 328 vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 328 VRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred EeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCc
Confidence 1110 111222233343 34444455678889999986543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-09 Score=100.87 Aligned_cols=251 Identities=14% Similarity=0.059 Sum_probs=157.2
Q ss_pred CEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccE--
Q psy8285 177 DTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQV-- 254 (507)
Q Consensus 177 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-- 254 (507)
.+++++.++.++.+|..+|+........+ .+.+.... .+..++++ ..+|.+..||..+++.+..........
T Consensus 107 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~p~v-~~~~v~v~-~~~g~l~a~d~~tG~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 107 LVFVGTEKGEVIALDAEDGKELWRAKLSS----EVLSPPLV-ANGLVVVR-TNDGRLTALDAATGERLWTYSRVTPALTL 180 (377)
T ss_pred EEEEEcCCCEEEEEECCCCcEeeeeccCc----eeecCCEE-ECCEEEEE-CCCCeEEEEEcCCCceeeEEccCCCceee
Confidence 36677789999999999998876655432 22221111 24567777 789999999999999877765433221
Q ss_pred ---EEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCC---Cc------e-EEEEEcCCCCEEEEEe-CCcEEEEEc
Q psy8285 255 ---IAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREG---DV------V-CGLKWSPNGRYLASGS-NNTVKIWDF 320 (507)
Q Consensus 255 ---~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~------v-~~~~~~~~~~~l~~~~-d~~i~i~d~ 320 (507)
......+..++.+..++.+..+|.++++.......... .. + ....+ .+..+++++ ++.++.+|.
T Consensus 181 ~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 181 RGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred cCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEEC
Confidence 11122345778888889999999988763221111000 00 0 01111 234555555 699999999
Q ss_pred CCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec-CC-CeEEEEECCCCCeEEEE
Q psy8285 321 RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT-DS-QVTSILWSEQYRELVTS 398 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~-~i~~~~~s~~~~~l~~~ 398 (507)
+++ +.+.... .. ....+.. .+.++++... ++.+..+|..+++.+..... .. ...+... .+..+++
T Consensus 259 ~tG---~~~W~~~-~~-~~~~p~~--~~~~vyv~~~---~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~- 325 (377)
T TIGR03300 259 RSG---RVLWKRD-AS-SYQGPAV--DDNRLYVTDA---DGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVV- 325 (377)
T ss_pred CCC---cEEEeec-cC-CccCceE--eCCEEEEECC---CCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEE-
Confidence 887 4443332 11 1122222 3446666554 99999999999988765532 21 2222222 3567877
Q ss_pred eccCCCeEEEEeCCCccEEEEeeccccceeE-EEECCCCCEEEEEeCCCcEEEE
Q psy8285 399 HGKQDCSLKMWEYPRLHLIEELKIHQERILS-AVLSPDQTCVAAASADETISIW 451 (507)
Q Consensus 399 ~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~s~~~dg~i~iw 451 (507)
++.+|.|+++|..+++.+.+++.+...+.. ..+. + ..|+.++.||.|+.|
T Consensus 326 -~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 326 -GDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred -EeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 788999999999999999988866544322 2222 3 458889999998876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.7e-11 Score=122.19 Aligned_cols=194 Identities=15% Similarity=0.253 Sum_probs=157.3
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee-cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT-HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD 283 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~ 283 (507)
+-..|.++.=+|...+.+++ +.||.+++|....++.+..+.. ....|+.+.| .|+.+..+..||.+.+|.... .
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltg-s~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--k 2283 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTG-SQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--K 2283 (2439)
T ss_pred ccCceeeecCCCCCceEEec-CCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--c
Confidence 45568889889999999999 9999999999988887777653 4478888888 699999999999999999883 3
Q ss_pred CceeeecCCCceEEEEEcCCCCEEEEEe---C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC
Q psy8285 284 YPTAITREGDVVCGLKWSPNGRYLASGS---N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC 359 (507)
Q Consensus 284 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 359 (507)
+....+.|......+.|-. ..+++++ | +.+.+||.........+. ..|.+.++++++-|.. +++.+|+.
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~-qllisggr-- 2356 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKH-QLLISGGR-- 2356 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcc-eEEEecCC--
Confidence 5667778888888888876 5666654 5 999999987653334444 6799999999999987 67777776
Q ss_pred CCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee
Q psy8285 360 DQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK 421 (507)
Q Consensus 360 d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~ 421 (507)
+|.|++||++..+.++.++. +. ...++++ |+..|.++||++.....++.+.
T Consensus 2357 ~G~v~l~D~rqrql~h~~~~--------~~-~~~~f~~--~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA--------LD-TREYFVT--GSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred cCcEEEeehHHHHHHHHhhh--------hh-hhheeec--cCcccceEEEEccccchhhcCc
Confidence 99999999998888777755 44 5567777 8999999999999887777665
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.1e-07 Score=96.12 Aligned_cols=397 Identities=12% Similarity=0.123 Sum_probs=213.2
Q ss_pred ccceeeeeeccCcceeeeccccccccceeee----cccCCcceeeeecCcccceeeccccccccccCCccCCceeEeecC
Q psy8285 6 LSAVKAIAWCPWEPTLLATGGGICDQTVRLW----NSMNGKEKCHVKTDSQVTSILWSEQYRESSRSKMVNTDRYVVDRS 81 (507)
Q Consensus 6 ~~~V~~l~fsp~g~~llasg~~~~d~~i~iW----d~~~g~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 81 (507)
.+.|.++.|-++...|++ +. .+|.|.+. |..+...-..=....+|.+++||||...+......+ ..+.+
T Consensus 75 ~~~ivs~~yl~d~~~l~~-~~--~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~--~l~~m-- 147 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCI-AL--ASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEG--NLLLM-- 147 (928)
T ss_pred CCcEEEEEeccCCCcEEE-EE--CCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCC--EEEEE--
Confidence 367889999998876443 33 47899888 555544322222578999999999998877544332 22222
Q ss_pred Ccccccc-ccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 82 SYDSLCS-HYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 82 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
..+|+.. ...+.....+ .-....-|.+. +--+|+++. +.... ....-|..| ..+..
T Consensus 148 t~~fd~i~E~~l~~~~~~-----------~~~~VsVGWGk---KeTQF~Gs~----gK~aa---~~~~~p~~~--~~d~~ 204 (928)
T PF04762_consen 148 TRDFDPISEVPLDSDDFG-----------ESKHVSVGWGK---KETQFHGSA----GKAAA---RQLRDPTVP--KVDEG 204 (928)
T ss_pred eccceEEEEeecCccccC-----------CCceeeeccCc---ccCccCcch----hhhhh---hhccCCCCC--ccccC
Confidence 1111111 0111111000 00000001110 000111110 00000 000111112 11111
Q ss_pred CcccccceeeeeeCCCC-EEEEEc-----C--CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC--CC
Q psy8285 161 SIINDFYTSGLDWGYHD-TLAVAL-----D--TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT--CT 230 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~-~~~~~~-----~--~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~d 230 (507)
.+..+-.-..++|-.|| ++|++. + ..+++|+-+ |+.....+- -.+--.+++|.|.|..+|+... ..
T Consensus 205 ~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~---v~gLe~~l~WrPsG~lIA~~q~~~~~ 280 (928)
T PF04762_consen 205 KLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP---VDGLEGALSWRPSGNLIASSQRLPDR 280 (928)
T ss_pred ccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc---CCCccCCccCCCCCCEEEEEEEcCCC
Confidence 12122233459999999 666541 2 589999875 554333321 3344568899999999998722 13
Q ss_pred CcEEEEeCCCceeEEEEe----ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCce-eee-cCCCceEEEEEcC
Q psy8285 231 EYIDLWHEQEERLIQKLR----THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPT-AIT-REGDVVCGLKWSP 302 (507)
Q Consensus 231 g~i~iwd~~~~~~~~~~~----~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~-~~~~~v~~~~~~~ 302 (507)
..|.+|.- +|-....+. .....|..+.| |+..||....|. |.+|-..+..-..+ .+. .....+..+.|+|
T Consensus 281 ~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdp 358 (928)
T PF04762_consen 281 HDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDP 358 (928)
T ss_pred cEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECC
Confidence 46777774 343333332 34567899999 688998877655 99999887542222 122 2233445599999
Q ss_pred CC-CEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC-----eee
Q psy8285 303 NG-RYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-----EKC 375 (507)
Q Consensus 303 ~~-~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-----~~~ 375 (507)
.. ..|.... ++.+..+++.-. ...-.+. .|++.-.+++-. ..++.+-.++..- ...
T Consensus 359 e~p~~L~v~t~~g~~~~~~~~~~-----v~~s~~~---------~~~D~g~vaVID---G~~lllTpf~~a~VPPPMs~~ 421 (928)
T PF04762_consen 359 EKPLRLHVLTSNGQYEIYDFAWD-----VSRSPGS---------SPNDNGTVAVID---GNKLLLTPFRRAVVPPPMSSY 421 (928)
T ss_pred CCCCEEEEEecCCcEEEEEEEEE-----EEecCCC---------CccCceEEEEEe---CCeEEEecccccCCCchHhce
Confidence 54 3455555 377777665421 1111000 112222233222 3456665555432 334
Q ss_pred eeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE--------EEEee----------ccccceeEEEECCCCC
Q psy8285 376 HVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL--------IEELK----------IHQERILSAVLSPDQT 437 (507)
Q Consensus 376 ~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~--------~~~~~----------~~~~~i~~~~~s~~~~ 437 (507)
.+.....|..++|++++..+++ -..||.|.+|....... ...+. .....+..+.|..+..
T Consensus 422 ~l~~~~~v~~vaf~~~~~~~av--l~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (928)
T PF04762_consen 422 ELELPSPVNDVAFSPSNSRFAV--LTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDT 499 (928)
T ss_pred EEcCCCCcEEEEEeCCCCeEEE--EECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCE
Confidence 5666788999999999987777 56799999998543211 11111 1234578888888877
Q ss_pred EEEEEeCC---CcEEEEecCCCC
Q psy8285 438 CVAAASAD---ETISIWNCFPRD 457 (507)
Q Consensus 438 ~l~s~~~d---g~i~iw~~~~~~ 457 (507)
.++....+ ..+.++++...+
T Consensus 500 ~~~~~~~~~~~~~i~~~~~~~~~ 522 (928)
T PF04762_consen 500 LLVLSDSDSNQSKIVLVDIDDSE 522 (928)
T ss_pred EEEEEecCcccceEEEEEeccCC
Confidence 66665554 678888885443
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.8e-11 Score=120.62 Aligned_cols=193 Identities=13% Similarity=0.179 Sum_probs=154.4
Q ss_pred eeeeeeCCC--CEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 168 TSGLDWGYH--DTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 168 i~~~~~s~~--~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
+.++.=+|. ++++++.||.+++|....++........| . ..|+.+.|+.+|..+.++ ..||.+.+|... .+...
T Consensus 2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g-~-s~vtr~~f~~qGnk~~i~-d~dg~l~l~q~~-pk~~~ 2286 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG-N-SRVTRSRFNHQGNKFGIV-DGDGDLSLWQAS-PKPYT 2286 (2439)
T ss_pred eeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC-c-chhhhhhhcccCCceeee-ccCCceeecccC-Cccee
Confidence 444555564 38899999999999998888777777665 4 899999999999999999 999999999987 56777
Q ss_pred EEeecCccEEEEEeeCCEEEEEe---cCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcC
Q psy8285 246 KLRTHMHQVIAMCWNGNLLSCGT---IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR 321 (507)
Q Consensus 246 ~~~~~~~~v~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~ 321 (507)
..+.|.....++.|=+..+++++ .++.+.+||..-.......-..|.+.++++++.|..+.|++|+ +|.|++||++
T Consensus 2287 s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIR 2366 (2439)
T ss_pred ccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehH
Confidence 77889999999999668888775 4578999997654333333378999999999999999999999 5999999999
Q ss_pred CCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC
Q psy8285 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 380 (507)
.. +..+.++. +. .+..+++++. .|.++||++.....++.+...
T Consensus 2367 qr---ql~h~~~~---------~~--~~~~f~~~ss--~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2367 QR---QLRHTFQA---------LD--TREYFVTGSS--EGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred HH---HHHHHhhh---------hh--hhheeeccCc--ccceEEEEccccchhhcCchh
Confidence 86 55555542 33 3456777665 999999999988777776543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.2e-08 Score=82.68 Aligned_cols=234 Identities=17% Similarity=0.146 Sum_probs=140.9
Q ss_pred eeeCCCC-EEEEEcCCeEEEEECCCC--ceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE
Q psy8285 171 LDWGYHD-TLAVALDTSVYTWNTKTN--KTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 171 ~~~s~~~-~~~~~~~~~i~iw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~ 247 (507)
++-+++| ++|+-.|..|.|-..++. ......+.+......=..++|+||+..||.+ ...|+|++||+...++. .+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a-~S~G~i~vfdl~g~~lf-~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYA-ESTGTIRVFDLMGSELF-VI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEE-cCCCeEEEEecccceeE-Ec
Confidence 3455677 899999999999887653 2333344433244456789999999999999 99999999998764333 33
Q ss_pred ee-------cCccEEEEEe-e-------CCEEEEEecCCeEEEEECCCC--Cc--Ccee--e-ecCCCceEEEEEcCCCC
Q psy8285 248 RT-------HMHQVIAMCW-N-------GNLLSCGTIGGNILHYDVRTH--SD--YPTA--I-TREGDVVCGLKWSPNGR 305 (507)
Q Consensus 248 ~~-------~~~~v~~~~~-~-------~~~l~~~~~dg~i~i~d~~~~--~~--~~~~--~-~~~~~~v~~~~~~~~~~ 305 (507)
.. -...|..+.| . ...|++-..+|.++-|-+..+ +. .... + ..+...|.++.|+|..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 22 2345666777 1 225667777888877765322 11 1111 1 22467899999999999
Q ss_pred EEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC------CeEEEEeCCCCCeeee-
Q psy8285 306 YLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD------QTVRLWNSMNGKEKCH- 376 (507)
Q Consensus 306 ~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d------~~i~i~d~~~~~~~~~- 376 (507)
+|++|+ . ..-... .+....+++-..-.+.++..-+... .| .+..+|.+-+.+....
T Consensus 161 LLlVgG~~~~~~~~s--------------~a~~~GLtaWRiL~~~Pyyk~v~~~-~~~~~~~~~~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMS--------------KASSCGLTAWRILSDSPYYKQVTSS-EDDITASSKRRGLLRIPSFKFFSRQ 225 (282)
T ss_pred EEEEeccCCCCCccc--------------cccccCceEEEEcCCCCcEEEcccc-Cccccccccccceeeccceeeeecc
Confidence 988877 2 210000 0111222222222222222211110 01 1223343333222111
Q ss_pred eecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc
Q psy8285 377 VKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH 423 (507)
Q Consensus 377 ~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~ 423 (507)
-.....|..+..||||+.|++ -..+|.|.+|++++.++......+
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~--ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLAC--IHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ccCCCceEEEEECCCCCEEEE--EEcCCeEEEEecCcchhhcccchh
Confidence 112367999999999999999 568999999999998877766543
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.1e-09 Score=87.88 Aligned_cols=228 Identities=17% Similarity=0.163 Sum_probs=147.8
Q ss_pred EEEEcCCeEEEEECCCCceeEEEe-cCCC--CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE--EEEeecCcc
Q psy8285 179 LAVALDTSVYTWNTKTNKTQLLVE-YPTY--DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI--QKLRTHMHQ 253 (507)
Q Consensus 179 ~~~~~~~~i~iw~~~~~~~~~~~~-~~~~--~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~ 253 (507)
+-+-..|.|.++.....+....+. +... ......++.|++.+..++++ ..+|.+.+-+....... +..+.|+.+
T Consensus 89 ~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs-~s~G~~~~v~~t~~~le~vq~wk~He~E 167 (339)
T KOG0280|consen 89 LDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVS-DSRGSISGVYETEMVLEKVQTWKVHEFE 167 (339)
T ss_pred eeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEE-cCCCcEEEEecceeeeeeccccccccee
Confidence 334478888888765433221111 1110 11124578899999999998 89999997666555443 478899999
Q ss_pred EEEEEe---eCCEEEEEecCCeEEEEECCCCCc-CceeeecCCCceEEEEEcC-CCCEEEEEe-CCcEEEEEcCCCCCCC
Q psy8285 254 VIAMCW---NGNLLSCGTIGGNILHYDVRTHSD-YPTAITREGDVVCGLKWSP-NGRYLASGS-NNTVKIWDFRQLDAKR 327 (507)
Q Consensus 254 v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~ 327 (507)
.+...| +.+++.+|+.|+.+..||++.... .......|...|.++.-+| .+.++++|+ |..|++||.++.. +
T Consensus 168 ~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~--k 245 (339)
T KOG0280|consen 168 AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG--K 245 (339)
T ss_pred eeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc--C
Confidence 999999 578999999999999999994432 2223456888899998876 577899999 7999999999652 4
Q ss_pred CeeeecCCCCCeeEEEEccCCCcE-EEEEccCCCCeEEEEeCCCCCee-----eeeecC-CCeEEEEECCCCCeEEEEec
Q psy8285 328 PQVNNQCHLSAVKAIAWCPWEPTL-LATGGGICDQTVRLWNSMNGKEK-----CHVKTD-SQVTSILWSEQYRELVTSHG 400 (507)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~-----~~~~~~-~~i~~~~~s~~~~~l~~~~g 400 (507)
++.... -.+.|+.+.++|..... ++++- -.-.+|-+...+... ...+.+ +-...-.|......++++ .
T Consensus 246 Pl~~~~-v~GGVWRi~~~p~~~~~lL~~CM---h~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC-s 320 (339)
T KOG0280|consen 246 PLFKAK-VGGGVWRIKHHPEIFHRLLAACM---HNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC-S 320 (339)
T ss_pred ccccCc-cccceEEEEecchhhhHHHHHHH---hcCceEEEecccccchheeeeccccccceeeccccccccceeeee-e
Confidence 554433 45899999999975433 33332 344555555444322 111222 344555565444566664 3
Q ss_pred cCCCeEE-EEeCCCc
Q psy8285 401 KQDCSLK-MWEYPRL 414 (507)
Q Consensus 401 ~~d~~i~-v~d~~~~ 414 (507)
..|+.++ +|-.-++
T Consensus 321 FYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 321 FYDKKIRQLWLHITG 335 (339)
T ss_pred ccccceeeeeeeccC
Confidence 4566644 6654433
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.7e-08 Score=100.80 Aligned_cols=238 Identities=9% Similarity=0.085 Sum_probs=150.3
Q ss_pred eeeeCCC-C--EEEEEcCCeEEEEECCCCceeEEEecCCC-----------CCCceEEEEEccCCCeEEEEeCCCCcEEE
Q psy8285 170 GLDWGYH-D--TLAVALDTSVYTWNTKTNKTQLLVEYPTY-----------DNAYISCVAWKPRTTDLAVTNTCTEYIDL 235 (507)
Q Consensus 170 ~~~~s~~-~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~~dg~i~i 235 (507)
.++++++ + +++-...+.|+++|... +........+. .-.....+++.+++..|+++...++.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 4677653 4 33334778999999854 43322221110 11235789999998877777456678999
Q ss_pred EeCCCceeEEEEeec-----------------CccEEEEEee---CCEEEEEecCCeEEEEECCCCCcCceeeec-----
Q psy8285 236 WHEQEERLIQKLRTH-----------------MHQVIAMCWN---GNLLSCGTIGGNILHYDVRTHSDYPTAITR----- 290 (507)
Q Consensus 236 wd~~~~~~~~~~~~~-----------------~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----- 290 (507)
+|..++. +.++.+. -.....++++ +.++++...++.|++||..++.. ..+.+
T Consensus 651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v--~~~~G~G~~~ 727 (1057)
T PLN02919 651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT--RVFSGDGYER 727 (1057)
T ss_pred EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE--EEEecCCccc
Confidence 9987754 3333210 1123467773 45666777788999999876531 11111
Q ss_pred ----------CCCceEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCC----------CeeeecC--------CCCCee
Q psy8285 291 ----------EGDVVCGLKWSPNGRYLASGS-N-NTVKIWDFRQLDAKR----------PQVNNQC--------HLSAVK 340 (507)
Q Consensus 291 ----------~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~----------~~~~~~~--------~~~~v~ 340 (507)
.-.....++++|+++.|+++. + +.|++||+.++.... ....+.. ......
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 112346799999998666655 4 999999988652100 0000000 111346
Q ss_pred EEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC--------------CCeEEEEECCCCCeEEEEeccCCCeE
Q psy8285 341 AIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD--------------SQVTSILWSEQYRELVTSHGKQDCSL 406 (507)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--------------~~i~~~~~s~~~~~l~~~~g~~d~~i 406 (507)
.++++++|. ++++... ++.|++||..++......... .....++++++|+.+++ ...++.|
T Consensus 808 Gvavd~dG~-LYVADs~--N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa--Dt~Nn~I 882 (1057)
T PLN02919 808 GVLCAKDGQ-IYVADSY--NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA--DTNNSLI 882 (1057)
T ss_pred eeeEeCCCc-EEEEECC--CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE--ECCCCEE
Confidence 889999985 6666554 899999999877655332211 25788999999987776 6788999
Q ss_pred EEEeCCCccE
Q psy8285 407 KMWEYPRLHL 416 (507)
Q Consensus 407 ~v~d~~~~~~ 416 (507)
++||+.+++.
T Consensus 883 rvid~~~~~~ 892 (1057)
T PLN02919 883 RYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCcc
Confidence 9999988754
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.4e-08 Score=81.95 Aligned_cols=229 Identities=10% Similarity=-0.002 Sum_probs=147.2
Q ss_pred CCCeEEEEeCCCCcEEEEeCCCcee-EEEEeecCccEEEEE---eeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCc
Q psy8285 219 RTTDLAVTNTCTEYIDLWHEQEERL-IQKLRTHMHQVIAMC---WNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDV 294 (507)
Q Consensus 219 ~~~~l~~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 294 (507)
...+|+.+ +..|...+|...+.+. ......|...|.-+. -....+..++.|.++++.++..+.. ........-.
T Consensus 83 kc~~la~g-G~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~-~~~~h~~~~~ 160 (344)
T KOG4532|consen 83 KCVTLADG-GASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN-KFAVHNQNLT 160 (344)
T ss_pred cccEEEec-cccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc-cceeeccccc
Confidence 34578887 8999999999986543 333333444333221 1344566777888888888876542 2222222233
Q ss_pred eEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe
Q psy8285 295 VCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE 373 (507)
Q Consensus 295 v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 373 (507)
+.++++++|++++++.+| ..|..|.+........-.........-.+..|+... ..++++.. ||++.|||++....
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~~FAv~~Q--dg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-LQFAVVFQ--DGTCAIYDVRNMAT 237 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-ceEEEEec--CCcEEEEEeccccc
Confidence 788999999999999998 999999988653222222333344555688898876 45566655 99999999987653
Q ss_pred eeee-----e-cCCCeEEEEECCCCCe--EEEEeccCCCeEEEEeCCCccEEEEeec-------cc-cceeEEEECCCCC
Q psy8285 374 KCHV-----K-TDSQVTSILWSEQYRE--LVTSHGKQDCSLKMWEYPRLHLIEELKI-------HQ-ERILSAVLSPDQT 437 (507)
Q Consensus 374 ~~~~-----~-~~~~i~~~~~s~~~~~--l~~~~g~~d~~i~v~d~~~~~~~~~~~~-------~~-~~i~~~~~s~~~~ 437 (507)
.... . +.+.+..+.|++.|.. |+. ...-+.+++.|+++++..+.+.. |. ..|..-.|+.++.
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~--sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~ 315 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI--SEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENE 315 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCCcceEEEE--ecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCc
Confidence 3222 2 2378999999987653 444 34467899999999876554432 22 2366677777766
Q ss_pred EEEEEeCCCcEEEEecCC
Q psy8285 438 CVAAASADETISIWNCFP 455 (507)
Q Consensus 438 ~l~s~~~dg~i~iw~~~~ 455 (507)
.+.+.+.+ .+.=|++..
T Consensus 316 s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 316 SNDVKNEL-QGAEYNILS 332 (344)
T ss_pred ccccccch-hhheeeccc
Confidence 66655544 344455543
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-08 Score=89.29 Aligned_cols=260 Identities=15% Similarity=0.205 Sum_probs=163.4
Q ss_pred EEEEECCCCceeEEEecCCCCCCceEEEEEccCCC-eEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe---eCC
Q psy8285 187 VYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTT-DLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW---NGN 262 (507)
Q Consensus 187 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~ 262 (507)
++..+..+.+..+ -+++ +...|..++|+|..+ .+..+ +.+..|+|.|+++...+..+..+ ..+++++| +.+
T Consensus 175 v~~l~~~~fkssq--~lp~-~g~~IrdlafSp~~~GLl~~a-sl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h 249 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ--ILPG-EGSFIRDLAFSPFNEGLLGLA-SLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERH 249 (463)
T ss_pred eEEeccCCcchhh--cccc-cchhhhhhccCccccceeeee-ccCceEEEEecccceeeeheecc-CCceeeeeccCCcc
Confidence 5555555544433 3344 788999999999987 45555 89999999999998888888877 88999999 467
Q ss_pred EEEEEecCCeEEEEECCCCCcCceeeec--CCCceEEEEEcC------CCCEEEEEeCCcEEEEEcCCCCCCCCeeeecC
Q psy8285 263 LLSCGTIGGNILHYDVRTHSDYPTAITR--EGDVVCGLKWSP------NGRYLASGSNNTVKIWDFRQLDAKRPQVNNQC 334 (507)
Q Consensus 263 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~------~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~ 334 (507)
+|.+|..+|.|.+||++..+.+...+.+ ...+|..++.-+ .+.+++... -....|++.......+...-.+
T Consensus 250 ~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~l-t~l~f~ei~~s~~~~p~vlele 328 (463)
T KOG1645|consen 250 VIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFAL-TVLQFYEIVFSAECLPCVLELE 328 (463)
T ss_pred eeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeee-hhhhhhhhhccccCCCcccccC
Confidence 8999999999999999987654443333 234455544433 233333333 3345566554322122222223
Q ss_pred CCCCeeEEEEccCCCcEEEEEccCCC----CeEEE-EeCCCCCeeeeeecC---C------CeEEEEECCCCCeEEEEec
Q psy8285 335 HLSAVKAIAWCPWEPTLLATGGGICD----QTVRL-WNSMNGKEKCHVKTD---S------QVTSILWSEQYRELVTSHG 400 (507)
Q Consensus 335 ~~~~v~~~~~~~~~~~~~~~~~~~~d----~~i~i-~d~~~~~~~~~~~~~---~------~i~~~~~s~~~~~l~~~~g 400 (507)
..+...++...+-.++++++.....+ ..+-. -|-.+|.++...+.. + .-..+.-.++.++++.. |
T Consensus 329 ~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~-g 407 (463)
T KOG1645|consen 329 PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV-G 407 (463)
T ss_pred CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEe-c
Confidence 46677788888877788887752000 01111 223344333322110 0 11122224556666665 7
Q ss_pred cCCCeEEEEeCCCccEEEEeeccccceeEEEECC-C-CCEEEEEeCCCcEEEEecCC
Q psy8285 401 KQDCSLKMWEYPRLHLIEELKIHQERILSAVLSP-D-QTCVAAASADETISIWNCFP 455 (507)
Q Consensus 401 ~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~-~-~~~l~s~~~dg~i~iw~~~~ 455 (507)
...+.+.+||..+++.++.+.- ..+|.++.... + +.+|++-+ |..++||+.+.
T Consensus 408 d~tn~lil~D~~s~evvQ~l~~-~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 408 DSTNELILQDPHSFEVVQTLAL-SEPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred CCcceeEEeccchhheeeeccc-CcceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 7788999999999999999874 47888877654 3 34666655 45789887653
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-08 Score=87.46 Aligned_cols=249 Identities=13% Similarity=0.192 Sum_probs=170.5
Q ss_pred ceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC-CceeEEEEe-ecCccEEEEEe--eCCEEEEEecCC
Q psy8285 196 KTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ-EERLIQKLR-THMHQVIAMCW--NGNLLSCGTIGG 271 (507)
Q Consensus 196 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~-~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg 271 (507)
++..+..++| +.+.+++...-|..+-+++. +.|.+++||--. .++.-..+. ....+++++++ ....|+.|-..|
T Consensus 13 kp~ll~~~eG-~~d~vn~~~l~~~e~gv~~~-s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 13 KPELLSKIEG-SQDDVNAAILIPKEEGVISV-SEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred chhhhhhhcC-chhhhhhheeccCCCCeEEc-cccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecc
Confidence 3334455667 88889999999998999999 999999999543 333333332 34567888888 567889999999
Q ss_pred eEEEEECCCCC---cCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccC
Q psy8285 272 NILHYDVRTHS---DYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW 347 (507)
Q Consensus 272 ~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 347 (507)
++.-+.+...- ...+....|...+..+.|+....++++.+ |..+.---.+.+ ..+.... .....+++.+.-.
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~---~~lg~Y~-~~~~~t~~~~d~~ 166 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESG---NRLGGYN-FETPASALQFDAL 166 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccC---CcccceE-eeccCCCCceeeE
Confidence 99888765421 23445667889999999998888888888 544433233332 1111110 0011111111111
Q ss_pred CCcEEEEEccCCCCeEEEEeC--CCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc-EEEEeecc
Q psy8285 348 EPTLLATGGGICDQTVRLWNS--MNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH-LIEELKIH 423 (507)
Q Consensus 348 ~~~~~~~~~~~~d~~i~i~d~--~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~-~~~~~~~~ 423 (507)
....| ...+.|..-.+ ..-.++..+..+ ..+.+++|.|..+.|++ |..|..+.+||+...+ ...++.+|
T Consensus 167 ---~~fvG--d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfS--g~~d~~vi~wdigg~~g~~~el~gh 239 (404)
T KOG1409|consen 167 ---YAFVG--DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFS--GASDHSVIMWDIGGRKGTAYELQGH 239 (404)
T ss_pred ---EEEec--ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEe--ccccCceEEEeccCCcceeeeeccc
Confidence 11222 12444444333 344566677766 78999999999999999 8999999999997554 34577889
Q ss_pred ccceeEEEECCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 424 QERILSAVLSPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 424 ~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
...|..+..-+.-+.+++++.||.|.+|+.....
T Consensus 240 ~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 240 NDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhhhhhhhhhhhheeeeeccCCCeEEEEecccee
Confidence 9999999988888999999999999999997543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.6e-07 Score=77.18 Aligned_cols=235 Identities=16% Similarity=0.209 Sum_probs=135.1
Q ss_pred EEEccCCCeEEEEeCCCCcEEEEeCCCc--eeEEEEee---cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCce
Q psy8285 214 VAWKPRTTDLAVTNTCTEYIDLWHEQEE--RLIQKLRT---HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPT 286 (507)
Q Consensus 214 ~~~~~~~~~l~~~~~~dg~i~iwd~~~~--~~~~~~~~---~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~ 286 (507)
++.+.+|+.||+. .|..|.|-..++. ..+...+. ....-..++| |+..||.+...|+|++||+.... ..
T Consensus 3 ~~~~~~Gk~lAi~--qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~--lf 78 (282)
T PF15492_consen 3 LALSSDGKLLAIL--QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE--LF 78 (282)
T ss_pred eeecCCCcEEEEE--eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce--eE
Confidence 5677889888887 7888888766543 22233222 2333466888 89999999999999999998643 11
Q ss_pred eee-------cCCCceEEEEEcCCC-------CEEEEEeCCcEEEEEcCC--CCCCCCeeeec---CCCCCeeEEEEccC
Q psy8285 287 AIT-------REGDVVCGLKWSPNG-------RYLASGSNNTVKIWDFRQ--LDAKRPQVNNQ---CHLSAVKAIAWCPW 347 (507)
Q Consensus 287 ~~~-------~~~~~v~~~~~~~~~-------~~l~~~~d~~i~i~d~~~--~~~~~~~~~~~---~~~~~v~~~~~~~~ 347 (507)
.+. .....|..+.|.+-. .+|+...+|.++-|-+.. .+..+....+. .+...|.++.++|.
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK 158 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence 111 123567777776532 344544567777776533 22223333332 24678999999998
Q ss_pred CCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCC------eEEEEeCCCccEEEEee
Q psy8285 348 EPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDC------SLKMWEYPRLHLIEELK 421 (507)
Q Consensus 348 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~------~i~v~d~~~~~~~~~~~ 421 (507)
.+.+++.|.. ... ++. .......+++-..-.+..+..-....+|+ +-.+|.+.+.+......
T Consensus 159 h~LLlVgG~~--~~~-------~~~---s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~ 226 (282)
T PF15492_consen 159 HRLLLVGGCE--QNQ-------DGM---SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQG 226 (282)
T ss_pred CCEEEEeccC--CCC-------Ccc---ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccc
Confidence 7544444432 221 000 00011122222222222221111011121 12334433332222222
Q ss_pred ccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceee
Q psy8285 422 IHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQ 464 (507)
Q Consensus 422 ~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 464 (507)
.....|..+..||||+.||+...+|.|.+|++.+-...++-..
T Consensus 227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 3466799999999999999999999999999998777766543
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.2e-09 Score=93.02 Aligned_cols=165 Identities=15% Similarity=0.189 Sum_probs=116.9
Q ss_pred eEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCC-CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC
Q psy8285 295 VCGLKWSPNGRYLASGSN-NTVKIWDFRQLDA-KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 372 (507)
Q Consensus 295 v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 372 (507)
...+..++.++++|++.. ....+++++.... .+...... -...-+++.|..+....+++-.......+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 344567788889988884 6766777765422 12222222 23344556666555555554432224566677766666
Q ss_pred eeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEe-eccccceeEEEECCCCCEEEEEeCCCcEEEE
Q psy8285 373 EKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEEL-KIHQERILSAVLSPDQTCVAAASADETISIW 451 (507)
Q Consensus 373 ~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~-~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw 451 (507)
+.-.+.+-+.++.++|+||+++|++ +..|..|+|-.+..-..+..+ -||..-|..++.-++ +.|+++|.|++|++|
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~Iit--aDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIIT--ADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLW 220 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEE--ecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence 6666655688999999999999999 889999999888766555555 469999999998765 558999999999999
Q ss_pred ecCCCCccccee
Q psy8285 452 NCFPRDKKRKAR 463 (507)
Q Consensus 452 ~~~~~~~~~~~~ 463 (507)
|+.+++.+..+.
T Consensus 221 d~~sgk~L~t~d 232 (390)
T KOG3914|consen 221 DITSGKLLDTCD 232 (390)
T ss_pred ecccCCcccccc
Confidence 999998876543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.5e-07 Score=78.11 Aligned_cols=213 Identities=15% Similarity=0.191 Sum_probs=139.7
Q ss_pred eeeeCC-CC-EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEc-cCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 170 GLDWGY-HD-TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWK-PRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 170 ~~~~s~-~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
++.|.+ ++ ++.+. ..+.|+.|+..+++... ...+ . ...+++. +++ .++++ .. +.+.++|..+++...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~----~-~~G~~~~~~~g-~l~v~-~~-~~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP----G-PNGMAFDRPDG-RLYVA-DS-GGIAVVDPDTGKVTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS----S-EEEEEEECTTS-EEEEE-ET-TCEEEEETTTTEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC----C-CceEEEEccCC-EEEEE-Ec-CceEEEecCCCcEEE
Confidence 467887 55 55555 68899999998876543 3331 2 6777887 564 55555 33 556666998886554
Q ss_pred EEee-----cCccEEEEEe--eCCEEEEEecC--------CeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEE
Q psy8285 246 KLRT-----HMHQVIAMCW--NGNLLSCGTIG--------GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASG 310 (507)
Q Consensus 246 ~~~~-----~~~~v~~~~~--~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 310 (507)
.... ......++++ +|++.++.... |.|..++.. ++ .......-...+.++|+|+++.|+.+
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEESSEEEEEEETTSSEEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecCcccccceEECCcchheeec
Confidence 4443 3456778888 57766665533 557777776 33 23333334567899999999988766
Q ss_pred e-C-CcEEEEEcCCCCC-C---CCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCe
Q psy8285 311 S-N-NTVKIWDFRQLDA-K---RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQV 383 (507)
Q Consensus 311 ~-d-~~i~i~d~~~~~~-~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i 383 (507)
. . +.|..+++..... . +.+..+....+..-.+++..+|. ++++..+ .+.|.++|.+ |+.+..+... ..+
T Consensus 152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~--~~~I~~~~p~-G~~~~~i~~p~~~~ 227 (246)
T PF08450_consen 152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWG--GGRIVVFDPD-GKLLREIELPVPRP 227 (246)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEET--TTEEEEEETT-SCEEEEEE-SSSSE
T ss_pred ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcC--CCEEEEECCC-ccEEEEEcCCCCCE
Confidence 5 3 8899999975421 1 11222222223478899999984 5554433 8999999987 8888888777 789
Q ss_pred EEEEE-CCCCCeEEEE
Q psy8285 384 TSILW-SEQYRELVTS 398 (507)
Q Consensus 384 ~~~~~-s~~~~~l~~~ 398 (507)
++++| -++.+.|+++
T Consensus 228 t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 228 TNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEESTTSSEEEEE
T ss_pred EEEEEECCCCCEEEEE
Confidence 99999 4777777764
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.6e-10 Score=101.00 Aligned_cols=206 Identities=13% Similarity=0.226 Sum_probs=150.2
Q ss_pred EEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCC------cCceeeecCCCceEEEEEcCCCCEEEEEeCCcE
Q psy8285 244 IQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHS------DYPTAITREGDVVCGLKWSPNGRYLASGSNNTV 315 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i 315 (507)
+..+.+|...|..+.- +.+-+++++.|.+|++|.++... .+......|+.+|.++.|-.+.++++++ |+.|
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-D~gi 806 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-DGGI 806 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-cCcc
Confidence 4567789999988877 68889999999999999997532 1445677899999999999998887765 6889
Q ss_pred EEEEcCCCCCCCCeeeec--CCCCCeeEEEEccC-CCcEEEEEccCCCCeEEEEeCCCCCeeeeeec-----C-CCeEEE
Q psy8285 316 KIWDFRQLDAKRPQVNNQ--CHLSAVKAIAWCPW-EPTLLATGGGICDQTVRLWNSMNGKEKCHVKT-----D-SQVTSI 386 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-----~-~~i~~~ 386 (507)
++||.--+ +++.... ...+.+..+..-|+ .+.++..+. +...+|+++|.+..+-...++. + ..+.++
T Consensus 807 HlWDPFig---r~Laq~~dapk~~a~~~ikcl~nv~~~iliAgc-saeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 807 HLWDPFIG---RLLAQMEDAPKEGAGGNIKCLENVDRHILIAGC-SAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred eeeccccc---chhHhhhcCcccCCCceeEecccCcchheeeec-cchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 99998766 3433221 12233444444444 334544442 2489999999998876555542 2 458899
Q ss_pred EECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEE-EecCCCC
Q psy8285 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISI-WNCFPRD 457 (507)
Q Consensus 387 ~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~i-w~~~~~~ 457 (507)
+..|.|+.+++ +-.+|.|.+.|.++|+.+...+.-......++ .|..+.|+....|.++.+ |...++.
T Consensus 883 aVa~~GN~lAa--~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 883 AVADKGNKLAA--ALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred EeccCcchhhH--HhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence 99999999999 88899999999999998887765554444454 355667777777888887 7765543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-06 Score=76.85 Aligned_cols=216 Identities=13% Similarity=0.078 Sum_probs=139.9
Q ss_pred EEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeee
Q psy8285 212 SCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAIT 289 (507)
Q Consensus 212 ~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 289 (507)
.++.|.+....|+.+....+.|..|+..+++... +.... ...+.+ .+..|+.+...+ +.++|..+++. .....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~-~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKV-TVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEE-EEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcE-EEEee
Confidence 3678988444444443778999999998876543 22222 455555 356666666554 45559887652 22222
Q ss_pred c-----CCCceEEEEEcCCCCEEEEEeC---------CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEE
Q psy8285 290 R-----EGDVVCGLKWSPNGRYLASGSN---------NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATG 355 (507)
Q Consensus 290 ~-----~~~~v~~~~~~~~~~~l~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 355 (507)
. .....+.+++.|+|++.++... +.|..++.. + + ...........+.++|+|+++.++++.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~---~-~~~~~~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G---K-VTVVADGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S---E-EEEEEEEESSEEEEEEETTSSEEEEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C---e-EEEEecCcccccceEECCcchheeecc
Confidence 1 3456789999999997777552 235566655 2 2 233333445678999999998888776
Q ss_pred ccCCCCeEEEEeCCCCCe----eeee---ecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccce
Q psy8285 356 GGICDQTVRLWNSMNGKE----KCHV---KTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERI 427 (507)
Q Consensus 356 ~~~~d~~i~i~d~~~~~~----~~~~---~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i 427 (507)
+. .+.|..+++..... ...+ ... +..-.+++..+|+..++ ....+.|.++|.. ++.+..+......+
T Consensus 153 s~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va--~~~~~~I~~~~p~-G~~~~~i~~p~~~~ 227 (246)
T PF08450_consen 153 SF--NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA--DWGGGRIVVFDPD-GKLLREIELPVPRP 227 (246)
T ss_dssp TT--TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE--EETTTEEEEEETT-SCEEEEEE-SSSSE
T ss_pred cc--cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE--EcCCCEEEEECCC-ccEEEEEcCCCCCE
Confidence 64 88999999863321 1122 222 24788999999988777 5578899999976 88888887665689
Q ss_pred eEEEE-CCCCCEEEEE
Q psy8285 428 LSAVL-SPDQTCVAAA 442 (507)
Q Consensus 428 ~~~~~-s~~~~~l~s~ 442 (507)
++++| -++.+.|+..
T Consensus 228 t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 228 TNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEESTTSSEEEEE
T ss_pred EEEEEECCCCCEEEEE
Confidence 99999 4676666544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.7e-08 Score=79.87 Aligned_cols=196 Identities=9% Similarity=-0.056 Sum_probs=130.7
Q ss_pred eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCC--CCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCC
Q psy8285 260 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN--GRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLS 337 (507)
Q Consensus 260 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 337 (507)
...+|+.|+..|...+|...+.+........+...|+-+.=.-+ .+.+++..|.++++.++.-+.....+.. ..-
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~---~~~ 159 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN---QNL 159 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeec---ccc
Confidence 56689999999999999999876555555555544332211112 2334444478888888876422222211 112
Q ss_pred CeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC--eeeeeec--CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 338 AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK--EKCHVKT--DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 338 ~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~--~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
.+.++++++|++.+.+++. ...|..|.+.... .+..... ...-.+..|+.....+|+ +..||.+.|||++.
T Consensus 160 ~~ns~~~snd~~~~~~Vgd---s~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv--~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGD---SRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAV--VFQDGTCAIYDVRN 234 (344)
T ss_pred ceeeeEEcCCCceEEEecC---CCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEE--EecCCcEEEEEecc
Confidence 3789999999976666665 7889999886543 2221222 234578899999999999 88999999999987
Q ss_pred ccEEE-----EeeccccceeEEEECCCCC--EEEEEeCCCcEEEEecCCCCccccee
Q psy8285 414 LHLIE-----ELKIHQERILSAVLSPDQT--CVAAASADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 414 ~~~~~-----~~~~~~~~i~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~ 463 (507)
..... +-..|.+.++.+.|++.|. +|...-.-+.+.+-|+++......+.
T Consensus 235 ~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 235 MATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred cccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 53222 2245889999999998654 44445456789999999877655443
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.9e-09 Score=95.50 Aligned_cols=244 Identities=14% Similarity=0.124 Sum_probs=160.4
Q ss_pred eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC-------ceeEEEEeecCccEEEEEe--eCCEEEEE
Q psy8285 197 TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE-------ERLIQKLRTHMHQVIAMCW--NGNLLSCG 267 (507)
Q Consensus 197 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~--~~~~l~~~ 267 (507)
...+..+.| |...|..++--.+.+.++++ +.|.+|++|.++. ..+..+++.|..+|.++.| +-+.++++
T Consensus 725 ~irL~nf~G-H~~~iRai~AidNENSFiSA-SkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc 802 (1034)
T KOG4190|consen 725 HIRLCNFTG-HQEKIRAIAAIDNENSFISA-SKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC 802 (1034)
T ss_pred eeeeecccC-cHHHhHHHHhcccccceeec-cCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec
Confidence 345666777 99999988877777788888 9999999998864 2356677889999999999 55566554
Q ss_pred ecCCeEEEEECCCCCcCceeee-cCCCceEEEEEcC--CCCEEEEE-e-CCcEEEEEcCCCCCCCCeeee--cCCCCCee
Q psy8285 268 TIGGNILHYDVRTHSDYPTAIT-REGDVVCGLKWSP--NGRYLASG-S-NNTVKIWDFRQLDAKRPQVNN--QCHLSAVK 340 (507)
Q Consensus 268 ~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~-~-d~~i~i~d~~~~~~~~~~~~~--~~~~~~v~ 340 (507)
||.|.+||.--+........ ...+.+..+..-+ +..+++.+ + ..+|+++|.+.....-..+.. .+..+-+.
T Consensus 803 --D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 803 --DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred --cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 78999999765542221111 1112223333333 34445555 3 499999999987332233322 34456689
Q ss_pred EEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEE-EeCCCccEEE
Q psy8285 341 AIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKM-WEYPRLHLIE 418 (507)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v-~d~~~~~~~~ 418 (507)
+++..|.|+.+.+.-+ +|.|.+.|.++|+.+..+..- .....++ .|..+.++. ...|.++.+ |..-.+....
T Consensus 881 ~iaVa~~GN~lAa~LS---nGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~--saldHslaVnWhaldgimh~ 954 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALS---NGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQ--SALDHSLAVNWHALDGIMHL 954 (1034)
T ss_pred EEEeccCcchhhHHhc---CCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHh--hcccceeEeeehhcCCeeee
Confidence 9999999977766555 999999999999987766543 2222232 355566666 456788888 8877766655
Q ss_pred EeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 419 ELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 419 ~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
..+....+..-+ -.-|..|+++.....+.+|.
T Consensus 955 q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 955 QDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred ccCCCCcchhhh--hccCceeEEeccCcEEEEEe
Confidence 554433332211 12355677777666777774
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4e-07 Score=86.56 Aligned_cols=255 Identities=12% Similarity=0.045 Sum_probs=154.8
Q ss_pred CCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEE-EEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccE
Q psy8285 176 HDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISC-VAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQV 254 (507)
Q Consensus 176 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 254 (507)
+.+++++.++.++.+|.++|+..-.....+ .+.+ .... +..++++ ..+|.+.-+|..+|+.+..........
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~----~~~ssP~v~--~~~v~v~-~~~g~l~ald~~tG~~~W~~~~~~~~~ 193 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAG----EALSRPVVS--DGLVLVH-TSNGMLQALNESDGAVKWTVNLDVPSL 193 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCC----ceecCCEEE--CCEEEEE-CCCCEEEEEEccCCCEeeeecCCCCcc
Confidence 347777788999999999999876666532 2221 1221 3466666 789999999999999887765421111
Q ss_pred -----EEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCC---C---ceEEEEEcC--CCCEEEEEe-CCcEEEEEc
Q psy8285 255 -----IAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREG---D---VVCGLKWSP--NGRYLASGS-NNTVKIWDF 320 (507)
Q Consensus 255 -----~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~---~v~~~~~~~--~~~~l~~~~-d~~i~i~d~ 320 (507)
......+..++.++.+|.+..+|..+++..-....... . ....+.-+| .+..++.++ ++.+..+|.
T Consensus 194 ~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 194 TLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred cccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 11112345677778899999999888763222111000 0 011111122 233444444 799999999
Q ss_pred CCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC--CCeEEEEECCCCCeEEEE
Q psy8285 321 RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD--SQVTSILWSEQYRELVTS 398 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~ 398 (507)
.++ +.+.... ......+.. .+..+++... ++.+..+|..+++.+...... ....+... .+.+|++
T Consensus 274 ~tG---~~~W~~~--~~~~~~~~~--~~~~vy~~~~---~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v- 340 (394)
T PRK11138 274 RSG---QIVWKRE--YGSVNDFAV--DGGRIYLVDQ---NDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVV- 340 (394)
T ss_pred CCC---CEEEeec--CCCccCcEE--ECCEEEEEcC---CCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEE-
Confidence 887 4333322 111112222 3446666554 999999999999876544321 11222222 2556777
Q ss_pred eccCCCeEEEEeCCCccEEEEeeccccceeE-EEECCCCCEEEEEeCCCcEEEEec
Q psy8285 399 HGKQDCSLKMWEYPRLHLIEELKIHQERILS-AVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 399 ~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
++.+|.|+++|..+++.+...+.....+.+ ..+ .+..|+.++.||.|+.+++
T Consensus 341 -~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 341 -GDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred -EeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 678999999999999998877643333322 122 3457888999999988764
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.4e-07 Score=80.02 Aligned_cols=216 Identities=10% Similarity=0.007 Sum_probs=133.2
Q ss_pred CCcEEEEeCCCceeEEEEeec--CccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCE
Q psy8285 230 TEYIDLWHEQEERLIQKLRTH--MHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY 306 (507)
Q Consensus 230 dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 306 (507)
+|.|..||..+++.+...... .....+... ++..+++++.++.++.||..+++. ...... ...+.......++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~-~W~~~~-~~~~~~~~~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKV-LWRFDL-PGPISGAPVVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEE-EEEEEC-SSCGGSGEEEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCE-EEEeec-cccccceeeeccccc
Confidence 689999999999998887641 222232233 788888889999999999988863 222222 222111112223444
Q ss_pred EEEEeCCcEEEEEcCCCCCCCCeeee-cCCC---CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC-
Q psy8285 307 LASGSNNTVKIWDFRQLDAKRPQVNN-QCHL---SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS- 381 (507)
Q Consensus 307 l~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~- 381 (507)
++...++.++.+|..++ +.+... .... ...........+..+++... ++.|..+|+++|+.+.......
T Consensus 80 ~v~~~~~~l~~~d~~tG---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTG---KVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEETTSEEEEEETTTS---CEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET---CSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccceeeeEecccCCc---ceeeeeccccccccccccccCceEecCEEEEEec---cCcEEEEecCCCcEEEEeecCCC
Confidence 44444689999998888 555552 2111 11122222223556666554 8999999999999987775532
Q ss_pred C----------eEEEEECCCCCeEEEEeccCCCe-EEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEE
Q psy8285 382 Q----------VTSILWSEQYRELVTSHGKQDCS-LKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISI 450 (507)
Q Consensus 382 ~----------i~~~~~s~~~~~l~~~~g~~d~~-i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~i 450 (507)
. +..-....++ .+++ ...++. +.+ |+.+++.+.+.. ...+..+ ...++..|+.++.++.|..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~--~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYV--SSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYA 226 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEE--ECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEE--EcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEE
Confidence 1 1222223344 5665 455665 555 999998765333 2223331 3467778888889999999
Q ss_pred EecCCCCccc
Q psy8285 451 WNCFPRDKKR 460 (507)
Q Consensus 451 w~~~~~~~~~ 460 (507)
||+.+++..-
T Consensus 227 ~d~~tG~~~W 236 (238)
T PF13360_consen 227 LDLKTGKVVW 236 (238)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCCEEe
Confidence 9999987653
|
... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.6e-07 Score=86.90 Aligned_cols=270 Identities=9% Similarity=-0.027 Sum_probs=160.1
Q ss_pred CCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCce---------EEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 176 HDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYI---------SCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 176 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
+.+++.+.++.+.-+|.++|+..-...+.. ..... ..+.. .+..++++ +.+|.+..+|..+|+.+..
T Consensus 70 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~~~v--~~~~v~v~-~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 70 NKVYAADRAGLVKALDADTGKEIWSVDLSE-KDGWFSKNKSALLSGGVTV--AGGKVYIG-SEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CEEEEECCCCeEEEEECCCCcEeeEEcCCC-cccccccccccccccccEE--ECCEEEEE-cCCCEEEEEECCCCCCccc
Confidence 336667788899999999998776665532 11100 01111 34567777 7899999999999998877
Q ss_pred EeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCC----ceEEEEEcCCCCEEEEEeCCcEEEEEcCC
Q psy8285 247 LRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGD----VVCGLKWSPNGRYLASGSNNTVKIWDFRQ 322 (507)
Q Consensus 247 ~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~d~~i~i~d~~~ 322 (507)
..............+..++.+..++.+..+|.++++..-........ ........ ++..++...++.+..+|..+
T Consensus 146 ~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~ 224 (394)
T PRK11138 146 TKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQ 224 (394)
T ss_pred ccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccC
Confidence 65433222222234667777888999999999988733222111000 00011111 33333333368898899888
Q ss_pred CCCCCCeeeecCCC----C---CeeEEEEcc--CCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCC
Q psy8285 323 LDAKRPQVNNQCHL----S---AVKAIAWCP--WEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYR 393 (507)
Q Consensus 323 ~~~~~~~~~~~~~~----~---~v~~~~~~~--~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~ 393 (507)
+ +.+....... . ....+.-+| .+..+++.+. ++.+..+|..+|+.+........ ..+. ..+.
T Consensus 225 G---~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~---~g~l~ald~~tG~~~W~~~~~~~-~~~~--~~~~ 295 (394)
T PRK11138 225 G---QLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY---NGNLVALDLRSGQIVWKREYGSV-NDFA--VDGG 295 (394)
T ss_pred C---hhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc---CCeEEEEECCCCCEEEeecCCCc-cCcE--EECC
Confidence 7 3222211000 0 000111111 2335666554 89999999999988765543221 1122 2456
Q ss_pred eEEEEeccCCCeEEEEeCCCccEEEEeecccc-ceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccccee
Q psy8285 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQE-RILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 463 (507)
.+++ ++.+|.+..+|..+++.+.....-.. ...+... .+.+|+.++.||.+++.|..+++.+...+
T Consensus 296 ~vy~--~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 296 RIYL--VDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred EEEE--EcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 6666 56899999999999987765432111 1122222 25678889999999999999988766544
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-08 Score=88.60 Aligned_cols=159 Identities=15% Similarity=0.189 Sum_probs=105.7
Q ss_pred eEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee---EEEEeecCccEEEEEe--eCCEEEEEecCC---eEEEEECCCCC
Q psy8285 211 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL---IQKLRTHMHQVIAMCW--NGNLLSCGTIGG---NILHYDVRTHS 282 (507)
Q Consensus 211 v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~--~~~~l~~~~~dg---~i~i~d~~~~~ 282 (507)
...+..++.++++|++ ..+....+++...... ......-...-.++.| +......+..-| .+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~-~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVA-TSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccccCCCceEEEEE-eCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 3445567777777777 5565655555543322 1111122233344444 333333443344 444555443
Q ss_pred cCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeee-cCCCCCeeEEEEccCCCcEEEEEccCCC
Q psy8285 283 DYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNN-QCHLSAVKAIAWCPWEPTLLATGGGICD 360 (507)
Q Consensus 283 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~d 360 (507)
.......+|-..++.++++||+++|+++. |..|++-..... ..+..+ .+|..-|..++.-++ +.+.+++| |
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~---f~IesfclGH~eFVS~isl~~~--~~LlS~sG--D 214 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT---FVIESFCLGHKEFVSTISLTDN--YLLLSGSG--D 214 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc---cchhhhccccHhheeeeeeccC--ceeeecCC--C
Confidence 24566778999999999999999999999 799999887664 344443 469999999999875 45666666 9
Q ss_pred CeEEEEeCCCCCeeeeeec
Q psy8285 361 QTVRLWNSMNGKEKCHVKT 379 (507)
Q Consensus 361 ~~i~i~d~~~~~~~~~~~~ 379 (507)
+++++||+++|+++.++..
T Consensus 215 ~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 215 KTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred CcEEEEecccCCcccccch
Confidence 9999999999998877654
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.5e-10 Score=107.03 Aligned_cols=210 Identities=13% Similarity=0.209 Sum_probs=154.2
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCC--eEEEEECCCCC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGG--NILHYDVRTHS 282 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg--~i~i~d~~~~~ 282 (507)
+....+|++|+-+.+.|++| +..|.|++|++.+|.......+|..+++-+.. +|..+++.+.-. -..+|++..-.
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG-~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVG-SHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred cccceeeEEeecCCceEEee-eccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 77889999999999999999 99999999999999999999999999999988 677666554433 46789987643
Q ss_pred cCceeeecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeeeec----CCCCCeeEEEEccCCCcEEEEEcc
Q psy8285 283 DYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQ----CHLSAVKAIAWCPWEPTLLATGGG 357 (507)
Q Consensus 283 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~ 357 (507)
.+...+. .-.++.|+..-..-+.|.. ....+||++++ .++.++. +....-.+..|+|+.. ++. .
T Consensus 1179 ~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~---~~l~tylt~~~~~~y~~n~a~FsP~D~-LIl---n 1247 (1516)
T KOG1832|consen 1179 GPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTC---SPLQTYLTDTVTSSYSNNLAHFSPCDT-LIL---N 1247 (1516)
T ss_pred Ccccccc----ccceeehhhhHHHHHhcccccceEEEecccC---cHHHHhcCcchhhhhhccccccCCCcc-eEe---e
Confidence 3333333 3456888876555555654 78899999998 4444421 1222336788999884 544 2
Q ss_pred CCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCC
Q psy8285 358 ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT 437 (507)
Q Consensus 358 ~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~ 437 (507)
||. +||.+..+.++.+..-.....=.|+|.|..++. . -.|||+++.+.++....-. -..+.|+..|.
T Consensus 1248 --dGv--LWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVII--N-----SEIwD~RTF~lLh~VP~Ld--qc~VtFNstG~ 1314 (1516)
T KOG1832|consen 1248 --DGV--LWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVII--N-----SEIWDMRTFKLLHSVPSLD--QCAVTFNSTGD 1314 (1516)
T ss_pred --Cce--eeeeccHHHHhhhhhheecccccccCCCceEEe--e-----chhhhhHHHHHHhcCcccc--ceEEEeccCcc
Confidence 664 799999888887765544444569999999998 3 3699999998887665322 24567887777
Q ss_pred EEEE
Q psy8285 438 CVAA 441 (507)
Q Consensus 438 ~l~s 441 (507)
.++.
T Consensus 1315 VmYa 1318 (1516)
T KOG1832|consen 1315 VMYA 1318 (1516)
T ss_pred chhh
Confidence 6553
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-06 Score=77.21 Aligned_cols=220 Identities=13% Similarity=0.053 Sum_probs=140.1
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEeeCCE
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNL 263 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 263 (507)
++.|..||..+|+......+.. ......+. ..+++..++++ +.++.+..||..+|+.+...............++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~-~~~~~~~v~~~-~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIGGPVAT-AVPDGGRVYVA-SGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCSSEEET-EEEETTEEEEE-ETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCCCccce-EEEeCCEEEEE-cCCCEEEEEECCCCCEEEEeeccccccceeeecccc
Confidence 6889999999999887777632 12222222 33356678887 799999999999999988777522211113446777
Q ss_pred EEEEecCCeEEEEECCCCCcCceeeecC---CCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCC-
Q psy8285 264 LSCGTIGGNILHYDVRTHSDYPTAITRE---GDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSA- 338 (507)
Q Consensus 264 l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~- 338 (507)
+++++.++.++.+|..+++......... ...........++..++.+. ++.|..+|++++ +.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-S
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCCC
Confidence 7788888999999998887433312211 11122223333477777777 699999999988 555554433221
Q ss_pred ---------e-eEEEEccCCCcEEEEEccCCCCe-EEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEE
Q psy8285 339 ---------V-KAIAWCPWEPTLLATGGGICDQT-VRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLK 407 (507)
Q Consensus 339 ---------v-~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~ 407 (507)
+ ..+.+. ++ .++++.. ++. +.+ |+.+++.+.... ...+.. ....++..|++ ++.++.|.
T Consensus 156 ~~~~~~~~~~~~~~~~~-~~-~v~~~~~---~g~~~~~-d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~--~~~~~~l~ 225 (238)
T PF13360_consen 156 SSPISSFSDINGSPVIS-DG-RVYVSSG---DGRVVAV-DLATGEKLWSKP-ISGIYS-LPSVDGGTLYV--TSSDGRLY 225 (238)
T ss_dssp S--EEEETTEEEEEECC-TT-EEEEECC---TSSEEEE-ETTTTEEEEEEC-SS-ECE-CEECCCTEEEE--EETTTEEE
T ss_pred CcceeeecccccceEEE-CC-EEEEEcC---CCeEEEE-ECCCCCEEEEec-CCCccC-CceeeCCEEEE--EeCCCEEE
Confidence 1 222222 34 6666554 664 555 999999665333 233332 14567778887 45799999
Q ss_pred EEeCCCccEEEE
Q psy8285 408 MWEYPRLHLIEE 419 (507)
Q Consensus 408 v~d~~~~~~~~~ 419 (507)
.||+++++.+..
T Consensus 226 ~~d~~tG~~~W~ 237 (238)
T PF13360_consen 226 ALDLKTGKVVWQ 237 (238)
T ss_dssp EEETTTTEEEEE
T ss_pred EEECCCCCEEeE
Confidence 999999987653
|
... |
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.7e-08 Score=80.29 Aligned_cols=230 Identities=17% Similarity=0.193 Sum_probs=136.2
Q ss_pred eEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE------------EEEeecC--ccEEEEEeeCCEEEEEecCCeEEEE
Q psy8285 211 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI------------QKLRTHM--HQVIAMCWNGNLLSCGTIGGNILHY 276 (507)
Q Consensus 211 v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~------------~~~~~~~--~~v~~~~~~~~~l~~~~~dg~i~i~ 276 (507)
++.+.++-+ ..|+++ ..++.+..+..-++.+. +.+..|. ++...++.-++.++++..||.+.++
T Consensus 39 ~~~~~~v~~-~~lf~~-e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTG-ETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechhh-heeecc-cchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 566666543 244444 55655555544333222 2222222 2223333357789999999999999
Q ss_pred ECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC------CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCc
Q psy8285 277 DVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN------NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPT 350 (507)
Q Consensus 277 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 350 (507)
+.+...............-.+.++...++++.++.- +..+.|+++.. +.+..-......|.+++-+|...+
T Consensus 117 s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~---~t~~~~~~~~~~v~~l~~hp~qq~ 193 (319)
T KOG4714|consen 117 STDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPI---KTLIPSKKALDAVTALCSHPAQQH 193 (319)
T ss_pred echHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccc---ccccccccccccchhhhCCccccc
Confidence 987532122222211122223344445666665431 56677777654 222222223345999999999999
Q ss_pred EEEEEccCCCCeEEEEeCCCCCeee-eeecC-CCeEEEEECCC-CCeEEEEeccCCCeEEEEeCCCccEEEEe---ecc-
Q psy8285 351 LLATGGGICDQTVRLWNSMNGKEKC-HVKTD-SQVTSILWSEQ-YRELVTSHGKQDCSLKMWEYPRLHLIEEL---KIH- 423 (507)
Q Consensus 351 ~~~~~~~~~d~~i~i~d~~~~~~~~-~~~~~-~~i~~~~~s~~-~~~l~~~~g~~d~~i~v~d~~~~~~~~~~---~~~- 423 (507)
++++|++ ||.+-+||.++..... .+..+ .++..+.|+|. +..|++ .++||.+..||..+ +.+..- ..|
T Consensus 194 ~v~cgt~--dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft--~sedGslw~wdas~-~~l~i~~~~s~~s 268 (319)
T KOG4714|consen 194 LVCCGTD--DGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFT--CSEDGSLWHWDAST-TFLSISNQASVIS 268 (319)
T ss_pred EEEEecC--CCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeE--ecCCCcEEEEcCCC-ceEEecCcccccc
Confidence 9999987 9999999999875333 33333 78999999996 456777 78999999999763 222100 000
Q ss_pred ---------------------ccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 424 ---------------------QERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 424 ---------------------~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
...|+ .|.--|..|++|++-+.|++++
T Consensus 269 ~WLsgD~v~s~i~i~~ll~~~~~Sin--sfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 269 SWLSGDPVKSRIEITSLLPSRSLSIN--SFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ccccCCcccceEeeeccccccceeee--eeeccCceEEeccccceEEEec
Confidence 01122 2333577888888888888875
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.3e-06 Score=87.79 Aligned_cols=273 Identities=13% Similarity=0.229 Sum_probs=155.9
Q ss_pred ceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 167 YTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.|.++.+-.+. ++.+...|.|.+-|.++......-. -...|.+++|+||++.++.. +..+++.+-. .+..++
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~----vd~GI~aaswS~Dee~l~li-T~~~tll~mT-~~f~~i 143 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN----VDNGISAASWSPDEELLALI-TGRQTLLFMT-KDFEPI 143 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeee----ccCceEEEeecCCCcEEEEE-eCCcEEEEEe-ccccch
Confidence 46677777654 7777788999999988877655544 46789999999999999998 6777766543 222222
Q ss_pred EEEe-----ecCccEEEEEeeC-CEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEE-----eC-
Q psy8285 245 QKLR-----THMHQVIAMCWNG-NLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASG-----SN- 312 (507)
Q Consensus 245 ~~~~-----~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~d- 312 (507)
..-. ...+....+-|.. ..-+-|+ .|.....+....+........+ +.=.++.|--||+++|+. .+
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs-~gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGS-EGRQAARQKIEKEKALEQIEQD-DHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred hccccccccccccccceecccccceeeecc-hhhhcccccccccccccchhhc-cCCceEEEccCCcEEEEEEEeccCCc
Confidence 2111 1112223334411 1111111 1211111111111101111112 223468999999999983 35
Q ss_pred CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee----eeecC-CCeEEEE
Q psy8285 313 NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC----HVKTD-SQVTSIL 387 (507)
Q Consensus 313 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~----~~~~~-~~i~~~~ 387 (507)
..|++||.+ + ..-..-....+--.+++|-|.|..+.+......|+.|.+|.- +|-.-. .+... .++..++
T Consensus 222 RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~ 296 (1265)
T KOG1920|consen 222 RKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELA 296 (1265)
T ss_pred eeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheee
Confidence 799999987 3 222222223334468999999977766665555778999983 443222 22223 3489999
Q ss_pred ECCCCCeEEEEeccCCC-eEEEEeCCCcc--EEEEeeccccceeEEEECCCC-CEEEEEeCCCcEEEEecC
Q psy8285 388 WSEQYRELVTSHGKQDC-SLKMWEYPRLH--LIEELKIHQERILSAVLSPDQ-TCVAAASADETISIWNCF 454 (507)
Q Consensus 388 ~s~~~~~l~~~~g~~d~-~i~v~d~~~~~--~~~~~~~~~~~i~~~~~s~~~-~~l~s~~~dg~i~iw~~~ 454 (507)
|+.++..|++.+....+ .|++|-+.+.. ..+.+.-..... +.|+|.. ..|..-..+|...++++.
T Consensus 297 Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 297 WNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred ecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence 99999999884333334 49999987642 222232222222 7788732 334444356665555543
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-08 Score=94.17 Aligned_cols=195 Identities=18% Similarity=0.302 Sum_probs=146.3
Q ss_pred eCCEEEEEecCCeEEEEECCCCCcCceeeecC-CCceEEEEEcCCC---CEEEEEeCCcEEEEEcCCCCCCCCeeeecCC
Q psy8285 260 NGNLLSCGTIGGNILHYDVRTHSDYPTAITRE-GDVVCGLKWSPNG---RYLASGSNNTVKIWDFRQLDAKRPQVNNQCH 335 (507)
Q Consensus 260 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~---~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 335 (507)
.|+-++.++.-| +++.|+...-.+...+... .-.+-.+.|+|.. .++++.+...-.+|++........-..+.+|
T Consensus 35 ~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhgh 113 (1081)
T KOG0309|consen 35 SGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGH 113 (1081)
T ss_pred ccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecC
Confidence 577778887766 5566777654344433321 2246677888754 3466666677779998876555666677889
Q ss_pred CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC-eeeeeec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 336 LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-EKCHVKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 336 ~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
...++.+.|+|+.+-++++++. |..+..||+++.. ++..+.. +.....+.|+-....+++ .+..+.|.+||.+.
T Consensus 114 sraitd~n~~~q~pdVlatcsv--dt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla--sshg~~i~vwd~r~ 189 (1081)
T KOG0309|consen 114 SRAITDINFNPQHPDVLATCSV--DTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA--SSHGNDIFVWDLRK 189 (1081)
T ss_pred ccceeccccCCCCCcceeeccc--cccceeeeccCCCcceeeeecccccCceeeecccCcchhh--hccCCceEEEeccC
Confidence 9999999999999999999986 9999999998864 4444433 356788999987777777 56677899999986
Q ss_pred c-cEEEEeeccccceeEEEECCC-CCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 414 L-HLIEELKIHQERILSAVLSPD-QTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 414 ~-~~~~~~~~~~~~i~~~~~s~~-~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
+ .++..+++|...|+.++|..- ...+.+++.|++|++|+.......
T Consensus 190 gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 190 GSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred CCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence 5 788899999999999999763 346788999999999999765443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-05 Score=70.24 Aligned_cols=221 Identities=14% Similarity=0.091 Sum_probs=146.1
Q ss_pred eeeeCCCC--EEEEE--cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEE----eCCCCcEEEEeCC-C
Q psy8285 170 GLDWGYHD--TLAVA--LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVT----NTCTEYIDLWHEQ-E 240 (507)
Q Consensus 170 ~~~~s~~~--~~~~~--~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~~dg~i~iwd~~-~ 240 (507)
.++.+|.. .++.+ -.....+||..+++....+..+. ..-.--.-.|++||++|+++ ....|.|-|||.. +
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~-gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPP-GRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC-CCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 36667743 55555 34578899999999877665432 22223357899999999987 1346789999998 6
Q ss_pred ceeEEEEeecCccEEEEEe--eCCEEEEEe------------------cCCeEEEEECCCCCcCce-ee--ecCCCceEE
Q psy8285 241 ERLIQKLRTHMHQVIAMCW--NGNLLSCGT------------------IGGNILHYDVRTHSDYPT-AI--TREGDVVCG 297 (507)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~------------------~dg~i~i~d~~~~~~~~~-~~--~~~~~~v~~ 297 (507)
.+.+.++..|.-.-..+.+ |++.|+++. .+..+...|..+++...+ .+ ..|...|+.
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 6778888877766667777 676777663 233455666666652222 23 346778999
Q ss_pred EEEcCCCCEEEEEeC-C-------cEEEEEcCCCCCCCCe----eeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEE
Q psy8285 298 LKWSPNGRYLASGSN-N-------TVKIWDFRQLDAKRPQ----VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRL 365 (507)
Q Consensus 298 ~~~~~~~~~l~~~~d-~-------~i~i~d~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i 365 (507)
+++.++|..++..-. + -+-+++.... ...+ .....-.+.+-+|++++++..+++++-. .+.+.+
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr--Gg~~~~ 243 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR--GGRVAV 243 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC--CCEEEE
Confidence 999999877666542 2 2344433321 1111 1122345789999999999777777664 889999
Q ss_pred EeCCCCCeeeeeecCCCeEEEEECCCCCeEEE
Q psy8285 366 WNSMNGKEKCHVKTDSQVTSILWSEQYRELVT 397 (507)
Q Consensus 366 ~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (507)
||..+++.+..... ..++.++-.+++ ++++
T Consensus 244 ~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~s 273 (305)
T PF07433_consen 244 WDAATGRLLGSVPL-PDACGVAPTDDG-FLVS 273 (305)
T ss_pred EECCCCCEeecccc-CceeeeeecCCc-eEEe
Confidence 99999998766543 356777777777 5555
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-08 Score=59.93 Aligned_cols=39 Identities=31% Similarity=0.499 Sum_probs=36.9
Q ss_pred ccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 414 LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 414 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
++++..+.+|...|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-08 Score=85.78 Aligned_cols=157 Identities=15% Similarity=0.100 Sum_probs=120.2
Q ss_pred CCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC-----Ceeeeee
Q psy8285 304 GRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG-----KEKCHVK 378 (507)
Q Consensus 304 ~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-----~~~~~~~ 378 (507)
+-.+++|.+..|-+-|++++ .-..+. ..+.|.++.|...+ .++..|.. +|.|..+|++.+ .+.+.+-
T Consensus 225 gyhfs~G~sqqv~L~nvetg----~~qsf~-sksDVfAlQf~~s~-nLv~~GcR--ngeI~~iDLR~rnqG~~~~a~rly 296 (425)
T KOG2695|consen 225 GYHFSVGLSQQVLLTNVETG----HQQSFQ-SKSDVFALQFAGSD-NLVFNGCR--NGEIFVIDLRCRNQGNGWCAQRLY 296 (425)
T ss_pred eeeecccccceeEEEEeecc----cccccc-cchhHHHHHhcccC-CeeEeccc--CCcEEEEEeeecccCCCcceEEEE
Confidence 33455666788999999886 223333 56788899998766 46666655 999999999864 5667777
Q ss_pred cCCCeEEEEECC-CCCeEEEEeccCCCeEEEEeCCCccE---EEEeeccccceeEE--EECCCCCEEEEEeCCCcEEEEe
Q psy8285 379 TDSQVTSILWSE-QYRELVTSHGKQDCSLKMWEYPRLHL---IEELKIHQERILSA--VLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 379 ~~~~i~~~~~s~-~~~~l~~~~g~~d~~i~v~d~~~~~~---~~~~~~~~~~i~~~--~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
+++.++++..-. ++++|++ .+.+|.|++||.+.-+. +..+.+|-+.-.-+ -..+....++++++|...+||.
T Consensus 297 h~Ssvtslq~Lq~s~q~Lma--S~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWs 374 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMA--SDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWS 374 (425)
T ss_pred cCcchhhhhhhccccceEee--ccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEe
Confidence 888999998877 7888888 78999999999987666 88888886544333 3455677899999999999999
Q ss_pred cCCCCcccceeecCCCcc
Q psy8285 453 CFPRDKKRKARQVGSGSS 470 (507)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~ 470 (507)
+..+..+...+......+
T Consensus 375 l~~ghLl~tipf~~s~~e 392 (425)
T KOG2695|consen 375 LDSGHLLCTIPFPYSASE 392 (425)
T ss_pred cccCceeeccCCCCcccc
Confidence 999988887776555444
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.9e-06 Score=77.14 Aligned_cols=251 Identities=14% Similarity=0.153 Sum_probs=143.9
Q ss_pred cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecC-----------
Q psy8285 183 LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHM----------- 251 (507)
Q Consensus 183 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~----------- 251 (507)
..+.+.++|+.+++...+.. ....+....|+|+|+.++.. .++.|.+++..+++..+......
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~----~~~~~~~~~~sP~g~~~~~v--~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwv 94 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTP----PPPKLQDAKWSPDGKYIAFV--RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWV 94 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-----EETTBSEEEE-SSSTEEEEE--ETTEEEEESSTTSEEEESES--TTTEEESB--HH
T ss_pred cceeEEEEecCCCceEECcC----CccccccceeecCCCeeEEE--ecCceEEEECCCCCeEEeccccceeEEcCcccee
Confidence 45689999999987665544 24578899999999999998 67899999988775443221111
Q ss_pred ------ccEEEEEe--eCCEEEEEecC----------------------------------C--eEEEEECCCCCcCcee
Q psy8285 252 ------HQVIAMCW--NGNLLSCGTIG----------------------------------G--NILHYDVRTHSDYPTA 287 (507)
Q Consensus 252 ------~~v~~~~~--~~~~l~~~~~d----------------------------------g--~i~i~d~~~~~~~~~~ 287 (507)
..-..+-| |+++|+....| . .+.++|+.+++.....
T Consensus 95 yeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~ 174 (353)
T PF00930_consen 95 YEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELD 174 (353)
T ss_dssp HHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE-
T ss_pred ccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEee
Confidence 11123444 56666554221 1 2445666665421111
Q ss_pred e----ecCCCceEEEEEcCCCC-EEEEEe--C---CcEEEEEcCCCCCCCCeeeecCCCCC---eeEEEEc-cCCCcEEE
Q psy8285 288 I----TREGDVVCGLKWSPNGR-YLASGS--N---NTVKIWDFRQLDAKRPQVNNQCHLSA---VKAIAWC-PWEPTLLA 353 (507)
Q Consensus 288 ~----~~~~~~v~~~~~~~~~~-~l~~~~--d---~~i~i~d~~~~~~~~~~~~~~~~~~~---v~~~~~~-~~~~~~~~ 353 (507)
. ......+..+.|.++++ +++.-. + ..+.++|..++.. +.+. .....+. ...+.|. +++..++.
T Consensus 175 ~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~-~~~~-~e~~~~Wv~~~~~~~~~~~~~~~~l~ 252 (353)
T PF00930_consen 175 PPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET-RVVL-EETSDGWVDVYDPPHFLGPDGNEFLW 252 (353)
T ss_dssp --HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC-EEEE-EEESSSSSSSSSEEEE-TTTSSEEEE
T ss_pred eccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce-eEEE-EecCCcceeeecccccccCCCCEEEE
Confidence 1 23345678899999998 444333 2 3466667766521 1111 1112222 2355655 77777776
Q ss_pred EEccCCCCeEEEEeCCCCCeeeeeecCCCeEE-EEECCCCCeEEEEeccC----CCeEEEEeCCCccEEEEeecccccee
Q psy8285 354 TGGGICDQTVRLWNSMNGKEKCHVKTDSQVTS-ILWSEQYRELVTSHGKQ----DCSLKMWEYPRLHLIEELKIHQERIL 428 (507)
Q Consensus 354 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~~~~g~~----d~~i~v~d~~~~~~~~~~~~~~~~i~ 428 (507)
....+.-..|.+++...+.......+.-.|.. +.++++++.|+.. +.. ...|+..++..+..+..+......-.
T Consensus 253 ~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~-a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~ 331 (353)
T PF00930_consen 253 ISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFT-ANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHY 331 (353)
T ss_dssp EEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEE-ESSGGTTSBEEEEEETTETTEEEESSTTSSTTE
T ss_pred EEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEE-ecCCCCCceEEEEEEeCCCCCeEeccCCCCCce
Confidence 66542233566777766665443344456744 7889998887765 333 23566667763344455553333336
Q ss_pred EEEECCCCCEEEEE
Q psy8285 429 SAVLSPDQTCVAAA 442 (507)
Q Consensus 429 ~~~~s~~~~~l~s~ 442 (507)
.+.|||++++++-.
T Consensus 332 ~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 332 SASFSPDGKYYVDT 345 (353)
T ss_dssp EEEE-TTSSEEEEE
T ss_pred EEEECCCCCEEEEE
Confidence 89999999987643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-05 Score=70.59 Aligned_cols=279 Identities=12% Similarity=0.089 Sum_probs=142.9
Q ss_pred cceeeeeeCCCC--EEEEEc---CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC
Q psy8285 166 FYTSGLDWGYHD--TLAVAL---DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 166 ~~i~~~~~s~~~--~~~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
.|.+.=+|.++| ++.++. ...+++.|+.+++..++...++ .......++|+++.++.. .....|+-.|+.+
T Consensus 36 ~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g---~~~~g~~~s~~~~~~~Yv-~~~~~l~~vdL~T 111 (386)
T PF14583_consen 36 LYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG---DNTFGGFLSPDDRALYYV-KNGRSLRRVDLDT 111 (386)
T ss_dssp --TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS----B-TTT-EE-TTSSEEEEE-ETTTEEEEEETTT
T ss_pred eeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC---CCccceEEecCCCeEEEE-ECCCeEEEEECCc
Confidence 444445677877 555552 5588999999999988887643 222246677888888766 5567899999999
Q ss_pred ceeEEEEeecCccEEEEEe----eCCEEEEEe----------------------cCCeEEEEECCCCCcCceeeecCCCc
Q psy8285 241 ERLIQKLRTHMHQVIAMCW----NGNLLSCGT----------------------IGGNILHYDVRTHSDYPTAITREGDV 294 (507)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~----~~~~l~~~~----------------------~dg~i~i~d~~~~~~~~~~~~~~~~~ 294 (507)
.+....+.....-+....| ++..++..- ....|.-.|+.+++ ...+......
T Consensus 112 ~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~~~~w 189 (386)
T PF14583_consen 112 LEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFEDTDW 189 (386)
T ss_dssp --EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS-
T ss_pred CcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEecCcc
Confidence 8776665555554444444 355544321 11245556777665 4444455667
Q ss_pred eEEEEEcCCC-CEEEEEeC---Cc--EEEEEcCCCC-CCCCeeeecCCCCCeeEEEEccCCCcEEEEEc--cCCCCeEEE
Q psy8285 295 VCGLKWSPNG-RYLASGSN---NT--VKIWDFRQLD-AKRPQVNNQCHLSAVKAIAWCPWEPTLLATGG--GICDQTVRL 365 (507)
Q Consensus 295 v~~~~~~~~~-~~l~~~~d---~~--i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~d~~i~i 365 (507)
+..+.|+|.. ..|+.|-+ .. -+||-++... ..+++..- .....+..=-|.|||..+...+. +..+..|.-
T Consensus 190 lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~ 268 (386)
T PF14583_consen 190 LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAG 268 (386)
T ss_dssp EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEE
T ss_pred ccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCCEEEEEeecCCCCceEEEe
Confidence 8889999954 55666553 22 3677665431 11222221 12345667789999988776442 222456888
Q ss_pred EeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCC---------------CeEEEEeCCCccEEEEeeccc------
Q psy8285 366 WNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQD---------------CSLKMWEYPRLHLIEELKIHQ------ 424 (507)
Q Consensus 366 ~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d---------------~~i~v~d~~~~~~~~~~~~~~------ 424 (507)
+|+.+++.......+ ....+-.++||++++-- |+.. --|+++++..++... +..|.
T Consensus 269 ~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGD-G~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~sw~v~ 345 (386)
T PF14583_consen 269 YDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGD-GGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDTSWKVL 345 (386)
T ss_dssp E-TTT--EEEEEEE--SEEEEEE-TTSSEEEEE-E-------------------EEEEEETTTTEEEE-EEE-------B
T ss_pred eCCCCCCceEEEeCC-ceeeeEEcCCCCEEEec-CCCCCccccccccceecCCcEEEEeccccCceee-eeeccCcceee
Confidence 899888765433333 45567778999888763 3321 146678887655432 22221
Q ss_pred ----c-ceeEEEECCCCCEEE-EEeCCCcEEEEecC
Q psy8285 425 ----E-RILSAVLSPDQTCVA-AASADETISIWNCF 454 (507)
Q Consensus 425 ----~-~i~~~~~s~~~~~l~-s~~~dg~i~iw~~~ 454 (507)
. .=....|+|||++++ ++...|...||-+.
T Consensus 346 ~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 346 DGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred cCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 1 113578999999775 45567777777543
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.5e-07 Score=81.66 Aligned_cols=268 Identities=12% Similarity=0.054 Sum_probs=177.3
Q ss_pred CEEEEEcCCeEEEEECCCCceeE-EEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee--cCcc
Q psy8285 177 DTLAVALDTSVYTWNTKTNKTQL-LVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT--HMHQ 253 (507)
Q Consensus 177 ~~~~~~~~~~i~iw~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~ 253 (507)
-++.++.||.++.|....-.... +..+.. |...|.+++.+.++..+.+.+..|..++++|+.+-..+.-++- -.+.
T Consensus 22 fiiqASlDGh~KFWkKs~isGvEfVKhFra-HL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~ 100 (558)
T KOG0882|consen 22 FIIQASLDGHKKFWKKSRISGVEFVKHFRA-HLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF 100 (558)
T ss_pred eEEeeecchhhhhcCCCCccceeehhhhHH-HHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc
Confidence 37888999999999876523222 223333 8888999999999988888723499999999987655433321 2222
Q ss_pred EEEEEeeC---CEEE-EEecCCeEEEEECCCCC-cCceeeecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCC-CC-
Q psy8285 254 VIAMCWNG---NLLS-CGTIGGNILHYDVRTHS-DYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQL-DA- 325 (507)
Q Consensus 254 v~~~~~~~---~~l~-~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~-~~- 325 (507)
+..+.-.| ..++ +.-.++.+.++|-.... +......-|..+|.++.+++.+..+++... |.|.-|..... +.
T Consensus 101 a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfP 180 (558)
T KOG0882|consen 101 AEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFP 180 (558)
T ss_pred eEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCc
Confidence 22111123 1333 33456889999987654 234445568899999999999998888884 99999988731 00
Q ss_pred ----------CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec----------------
Q psy8285 326 ----------KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT---------------- 379 (507)
Q Consensus 326 ----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---------------- 379 (507)
..-+..+........++.|+|++..+-..+. |..|++++.++++.++.+..
T Consensus 181 r~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~---DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~ 257 (558)
T KOG0882|consen 181 RTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP---DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLM 257 (558)
T ss_pred cccccccccccchhhcccccccCccceEEccccCcccccCc---ccEEEEEEeccchhhhhhhccchhhhhccccccccc
Confidence 0111222234556789999999987776664 99999999999876554421
Q ss_pred ----------------C--CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec------------------c
Q psy8285 380 ----------------D--SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI------------------H 423 (507)
Q Consensus 380 ----------------~--~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~------------------~ 423 (507)
+ ..-+.+.|...|++|+. |+.= -|++.++.+++..+.+-. +
T Consensus 258 ~VelgRRmaverelek~~~~~~~~~~fdes~~flly--~t~~-gikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~ 334 (558)
T KOG0882|consen 258 HVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLY--GTIL-GIKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSN 334 (558)
T ss_pred eeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEe--ecce-eEEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhcc
Confidence 1 13456788899999998 5443 388999888777665421 0
Q ss_pred ccc-------eeEEEECCCCCEEEEEeCCCcEEEE
Q psy8285 424 QER-------ILSAVLSPDQTCVAAASADETISIW 451 (507)
Q Consensus 424 ~~~-------i~~~~~s~~~~~l~s~~~dg~i~iw 451 (507)
... -..+.+.+|...++++-....++++
T Consensus 335 ~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 335 LAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred chhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 000 0113355666667777777778887
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.5e-05 Score=73.35 Aligned_cols=217 Identities=9% Similarity=0.056 Sum_probs=122.5
Q ss_pred ccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecC-ccEEEEEeeCCEEEEEecCC----eEEEEECCCCCcCceeeecC
Q psy8285 217 KPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHM-HQVIAMCWNGNLLSCGTIGG----NILHYDVRTHSDYPTAITRE 291 (507)
Q Consensus 217 ~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~ 291 (507)
.|||+.+....-..+.+.+.|..+.+...++.-.. .....+..+++++++.+.+. ++...+..... ....+.
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d-~~vvfn-- 277 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD-WVVVFN-- 277 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCc-eEEEEc--
Confidence 44554443332344566677777666655554322 22333444777777665321 22222222111 000000
Q ss_pred CCceEEEEEcCCCCEEEEEeCCcEEEEEcCCC-CCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC
Q psy8285 292 GDVVCGLKWSPNGRYLASGSNNTVKIWDFRQL-DAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN 370 (507)
Q Consensus 292 ~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 370 (507)
-..+ -++.++|++... .++.|.+.|.++. .....+...-.-......+.++|||+++++++.. +.++.++|+.+
T Consensus 278 i~~i--ea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVankl--S~tVSVIDv~k 352 (635)
T PRK02888 278 IARI--EEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKL--SPTVTVIDVRK 352 (635)
T ss_pred hHHH--HHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCC--CCcEEEEEChh
Confidence 0000 123457777665 3578999998871 0002333333356677899999999988888764 99999999987
Q ss_pred CCe------------eeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC----------ccEEEEeecccccee
Q psy8285 371 GKE------------KCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR----------LHLIEELKIHQERIL 428 (507)
Q Consensus 371 ~~~------------~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~----------~~~~~~~~~~~~~i~ 428 (507)
.+. .............+|.++|....+ -.-|..|..||+.. ...+..+..|..+-.
T Consensus 353 ~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~ayts--lf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh 430 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTT--LFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGH 430 (635)
T ss_pred hhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEe--EeecceeEEEehHHHHHHhccccCCcceecccCCCccce
Confidence 653 333333445567889999875444 57799999999875 233444444433221
Q ss_pred -----EEEECCCCCEEEEEe
Q psy8285 429 -----SAVLSPDQTCVAAAS 443 (507)
Q Consensus 429 -----~~~~s~~~~~l~s~~ 443 (507)
.=.-.|||++|++..
T Consensus 431 ~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 431 NHASMGETKEADGKWLVSLN 450 (635)
T ss_pred eeecCCCcCCCCCCEEEEcc
Confidence 112356788887764
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.8e-08 Score=80.68 Aligned_cols=149 Identities=15% Similarity=0.202 Sum_probs=94.9
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEc-c--CCCCeEEEEeCCCCCeee-ee
Q psy8285 303 NGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGG-G--ICDQTVRLWNSMNGKEKC-HV 377 (507)
Q Consensus 303 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~--~~d~~i~i~d~~~~~~~~-~~ 377 (507)
-++.++++. ||.+.+++.+.. .+....+..-...-.+.+....+ .++.++. + .+-+..+.|+++..+.+. ..
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~--~~~~~~i~~~~~~~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~ 176 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKD--LALMSRIPSIHSGSASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKTLIPSK 176 (319)
T ss_pred cCCceEecCCCceEEEEechHH--Hhhhhhcccccccccccceeecc-cEEecCCcceEeeccceeeecccccccccccc
Confidence 456677777 799999988752 11111111111111122222333 2333332 0 012345556654433222 11
Q ss_pred ecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEE-EEeeccccceeEEEECC-CCCEEEEEeCCCcEEEEecCC
Q psy8285 378 KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLI-EELKIHQERILSAVLSP-DQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 378 ~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~-~~~~~~~~~i~~~~~s~-~~~~l~s~~~dg~i~iw~~~~ 455 (507)
.....+.+++-+|..+.++++ |++||.+-+||.++.... ..++.|..+|+.+.|+| ++..|++++.||.+.-||..+
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~c-gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCC-GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccchhhhCCcccccEEEE-ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 222459999999988887776 899999999999987543 34678999999999999 577999999999999999875
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-07 Score=79.10 Aligned_cols=203 Identities=16% Similarity=0.297 Sum_probs=132.9
Q ss_pred cCccEEEEEee--CCEEEEEecCCeEEEEECCCCCcCc----eeeecCC------------CceEEEEEcCCC---CEEE
Q psy8285 250 HMHQVIAMCWN--GNLLSCGTIGGNILHYDVRTHSDYP----TAITREG------------DVVCGLKWSPNG---RYLA 308 (507)
Q Consensus 250 ~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~------------~~v~~~~~~~~~---~~l~ 308 (507)
....|+++.|+ |.++++|...|.|.+|.-.....+. ..++.|. ..|..+.|..++ .+|+
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34568889994 7899999999999999866543211 1233442 346777777654 3577
Q ss_pred EEeCCcEEEEEcCCCCC----------------C-----------------------CCee-eecCCCCCeeEEEEccCC
Q psy8285 309 SGSNNTVKIWDFRQLDA----------------K-----------------------RPQV-NNQCHLSAVKAIAWCPWE 348 (507)
Q Consensus 309 ~~~d~~i~i~d~~~~~~----------------~-----------------------~~~~-~~~~~~~~v~~~~~~~~~ 348 (507)
++.|.+|++|.+..... . .+.+ ....|.-.+.++.|+.|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 77789999998864300 0 0000 112466678899999887
Q ss_pred CcEEEEEccCCCCeEEEEeCCCCCee---eeeecC------CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc----
Q psy8285 349 PTLLATGGGICDQTVRLWNSMNGKEK---CHVKTD------SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH---- 415 (507)
Q Consensus 349 ~~~~~~~~~~~d~~i~i~d~~~~~~~---~~~~~~------~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~---- 415 (507)
.. +.++. |-.|.+|++.-.... ..++.+ .-|++..|+|....++.. .+..|.|++-|++...
T Consensus 185 et-~lSaD---dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmY-SsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 185 ET-LLSAD---DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMY-SSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred he-eeecc---ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEE-ecCCCcEEehhhhhhhhccC
Confidence 54 44444 889999998654322 222222 247889999986655544 4678999999997421
Q ss_pred --EEEEe----------eccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 416 --LIEEL----------KIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 416 --~~~~~----------~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
.+.+. .+-...|..+.|+++|+++++-+. -+|+|||+...+.
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~ 313 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN 313 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence 11111 122356889999999999987654 4899999986543
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-07 Score=82.48 Aligned_cols=248 Identities=13% Similarity=0.126 Sum_probs=166.9
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc---eeEEEEeecCccEEEEEe--eCCEEEEEec-CCeEEEEECCC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE---RLIQKLRTHMHQVIAMCW--NGNLLSCGTI-GGNILHYDVRT 280 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-dg~i~i~d~~~ 280 (507)
|.+.|+.+.-. ..+++.++ +.||.++.|.-..- +.+..+..|...+.+++. ++.++.+.+. |..++++|+.+
T Consensus 8 hrd~i~hv~~t-ka~fiiqA-SlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQA-SLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeee-hhheEEee-ecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 66667766554 45688888 99999999975431 334455567777766655 7888888777 99999999987
Q ss_pred CCcC-ceeeecCCCceEEEEEcCC-C-CEEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEE
Q psy8285 281 HSDY-PTAITREGDVVCGLKWSPN-G-RYLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATG 355 (507)
Q Consensus 281 ~~~~-~~~~~~~~~~v~~~~~~~~-~-~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 355 (507)
.... ...+....+.+. ...++. - ..++++. + +.+.++|-..... +....-.-|..+|..+.++|-+...+...
T Consensus 86 ~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~-q~~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC-QDGYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred cchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcC-ccceecccccCceEEEEeeccccceeecc
Confidence 5522 112222223222 222222 1 2455554 5 9999999876532 33344455999999999999886655543
Q ss_pred ccCCCCeEEEEeCCC------CCeeeee----------ecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEE
Q psy8285 356 GGICDQTVRLWNSMN------GKEKCHV----------KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEE 419 (507)
Q Consensus 356 ~~~~d~~i~i~d~~~------~~~~~~~----------~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~ 419 (507)
. .|.|..|.... .+....+ +......++.|+|++..+.+ -+.|..|++++.++++.++.
T Consensus 164 ~---~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qist--l~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 164 I---SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQIST--LNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred c---cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccc--cCcccEEEEEEeccchhhhh
Confidence 3 79999999873 1111111 12356889999999999999 56899999999998876554
Q ss_pred eec--------------------------------cc-cceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceee
Q psy8285 420 LKI--------------------------------HQ-ERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQ 464 (507)
Q Consensus 420 ~~~--------------------------------~~-~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 464 (507)
+.. |. ..-+.+.|...+++|+-++-=| |++.++.+.+..+.+..
T Consensus 239 iDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 239 IDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGK 315 (558)
T ss_pred hhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEecc
Confidence 421 11 1234577888999999888765 89999988877666543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.5e-05 Score=67.55 Aligned_cols=227 Identities=15% Similarity=0.108 Sum_probs=145.3
Q ss_pred ceEEEEEccCC-CeEEEEeCCCC-cEEEEeCCCceeEEEEeecCccE----EEEEeeCCEEEEEec-----CCeEEEEEC
Q psy8285 210 YISCVAWKPRT-TDLAVTNTCTE-YIDLWHEQEERLIQKLRTHMHQV----IAMCWNGNLLSCGTI-----GGNILHYDV 278 (507)
Q Consensus 210 ~v~~~~~~~~~-~~l~~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v----~~~~~~~~~l~~~~~-----dg~i~i~d~ 278 (507)
....++.+|.. ..++.+ -.-| ...+||..+++....+....+.- -.++-||++|++.-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafa-RRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFA-RRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEE-eCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEEC
Confidence 45678888854 444455 5555 57789999998887776533332 223337898888644 478999999
Q ss_pred CCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC--------C-----------cEEEEEcCCCCCCCCeee--e--cCC
Q psy8285 279 RTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN--------N-----------TVKIWDFRQLDAKRPQVN--N--QCH 335 (507)
Q Consensus 279 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--------~-----------~i~i~d~~~~~~~~~~~~--~--~~~ 335 (507)
...-.....+..+.-.-..+.+.|||+.|+++.- | .+.+.|..++ +.+.. + ..|
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---ALLEQVELPPDLH 161 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC---ceeeeeecCcccc
Confidence 9443345566667666778999999988877642 2 2344455555 33333 3 237
Q ss_pred CCCeeEEEEccCCCcEEEEEccC--CCC--eEEEEeCCCCCeeeeeec--------CCCeEEEEECCCCCeEEEEeccCC
Q psy8285 336 LSAVKAIAWCPWEPTLLATGGGI--CDQ--TVRLWNSMNGKEKCHVKT--------DSQVTSILWSEQYRELVTSHGKQD 403 (507)
Q Consensus 336 ~~~v~~~~~~~~~~~~~~~~~~~--~d~--~i~i~d~~~~~~~~~~~~--------~~~i~~~~~s~~~~~l~~~~g~~d 403 (507)
...+..+++.++|.-++..--.- .+. -+-+++ .++.+..+.. ...+-++++++++..++++ .-..
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~--~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t-sPrG 238 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHR--RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT-SPRG 238 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEc--CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEE-CCCC
Confidence 77899999999884333321100 011 233333 3333333322 3578999999999999886 4577
Q ss_pred CeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCc
Q psy8285 404 CSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADET 447 (507)
Q Consensus 404 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~ 447 (507)
+.+.+||..+++.+....- ..+..++-.+++ ++++.+ .|.
T Consensus 239 g~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 239 GRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred CEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCC-Ccc
Confidence 8999999999998876653 346677776666 555544 444
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.4e-05 Score=64.28 Aligned_cols=202 Identities=10% Similarity=0.160 Sum_probs=118.2
Q ss_pred EEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeec-CccEEEEEe--eCCEEEEEecCCeEEEE
Q psy8285 200 LVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTH-MHQVIAMCW--NGNLLSCGTIGGNILHY 276 (507)
Q Consensus 200 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~--~~~~l~~~~~dg~i~i~ 276 (507)
...+++ -...+..++|+|+...|++.....+.|..++. +|+.++.+.-. ....-.+++ ++.++++.-+++.+.++
T Consensus 14 ~~~l~g-~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 14 AKPLPG-ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp EEE-TT---S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred eeECCC-ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 345555 56679999999987766666588889988886 47787777643 355778888 45555555568999999
Q ss_pred ECCCCCcCc--e---ee-----ecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeee--------ecCCCC
Q psy8285 277 DVRTHSDYP--T---AI-----TREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVN--------NQCHLS 337 (507)
Q Consensus 277 d~~~~~~~~--~---~~-----~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~--------~~~~~~ 337 (507)
++....... . .+ ..+...+..++|+|.++.|+.+.+ .-..+|.++.......+.. ......
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 985432111 1 11 124456899999998777777774 6666666654100011111 112344
Q ss_pred CeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC----------CCeEEEEECCCCCeEEEEeccCCCeEE
Q psy8285 338 AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD----------SQVTSILWSEQYRELVTSHGKQDCSLK 407 (507)
Q Consensus 338 ~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~g~~d~~i~ 407 (507)
.+.+++++|...++++.+.. +..|..+| .+|+++..+.-. .+.-.++|.++|+..++ ++.+..+
T Consensus 172 d~S~l~~~p~t~~lliLS~e--s~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv---sEpNlfy 245 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDE--SRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV---SEPNLFY 245 (248)
T ss_dssp ---EEEEETTTTEEEEEETT--TTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE---ETTTEEE
T ss_pred cccceEEcCCCCeEEEEECC--CCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE---cCCceEE
Confidence 67899999998888888775 89999999 677776655432 25789999999977776 4666666
Q ss_pred EE
Q psy8285 408 MW 409 (507)
Q Consensus 408 v~ 409 (507)
+|
T Consensus 246 ~f 247 (248)
T PF06977_consen 246 RF 247 (248)
T ss_dssp EE
T ss_pred Ee
Confidence 65
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-05 Score=76.53 Aligned_cols=150 Identities=11% Similarity=0.039 Sum_probs=108.0
Q ss_pred EcCCCCEEEEEe--CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccC-------------------
Q psy8285 300 WSPNGRYLASGS--NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGI------------------- 358 (507)
Q Consensus 300 ~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------------------- 358 (507)
++|||+.+...+ .+.+.+.|.++. +...++. -.+....+.++|+|+++++++..+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etm---eV~~qV~-Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETM---EVAWQVM-VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccc---eEEEEEE-eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 566887765555 278888888875 4444433 223446778888887777765211
Q ss_pred ------------------CCCeEEEEeCCC-----CCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc
Q psy8285 359 ------------------CDQTVRLWNSMN-----GKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 359 ------------------~d~~i~i~d~~~-----~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~ 415 (507)
.++.|.+.|.++ .+.+..+........+.++|||++++++ +..++.+.|+|+.+.+
T Consensus 276 fni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVa-nklS~tVSVIDv~k~k 354 (635)
T PRK02888 276 FNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIAN-GKLSPTVTVIDVRKLD 354 (635)
T ss_pred EchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEe-CCCCCcEEEEEChhhh
Confidence 135688888887 4566677777788999999999999997 7779999999998755
Q ss_pred E------------EEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 416 L------------IEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 416 ~------------~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
. +.+..-..++ ...+|.++|....|.--|..|..|++..
T Consensus 355 ~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 355 DLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3 3333332333 4578999998888888999999999986
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.7e-07 Score=86.44 Aligned_cols=179 Identities=17% Similarity=0.228 Sum_probs=134.6
Q ss_pred CCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEE
Q psy8285 220 TTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLK 299 (507)
Q Consensus 220 ~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~ 299 (507)
+..++.| +....+..+|+++.+..+...-....+.-+..+++.+.+|...|+|.+-|.++.+ ....+..|.+.|..+
T Consensus 147 ~~~~i~G-g~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~siSDf- 223 (1118)
T KOG1275|consen 147 PSTLIMG-GLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGSISDF- 223 (1118)
T ss_pred Ccceeec-chhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCc-eeeeeeccccceeee-
Confidence 3456666 6777888899999888887776666788889999999999999999999999886 788899999998754
Q ss_pred EcCCCCEEEEEe-C---------CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeC-
Q psy8285 300 WSPNGRYLASGS-N---------NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNS- 368 (507)
Q Consensus 300 ~~~~~~~l~~~~-d---------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~- 368 (507)
+-.|+.|++++ . .-|++||++.. +.+..+.-+.++ .-+.|.|.=...+++.+. .|...+-|.
T Consensus 224 -Dv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm---ral~PI~~~~~P-~flrf~Psl~t~~~V~S~--sGq~q~vd~~ 296 (1118)
T KOG1275|consen 224 -DVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM---RALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ--SGQFQFVDTA 296 (1118)
T ss_pred -eccCCeEEEeecccccccccccchhhhhhhhhh---hccCCcccccCc-hhhhhcccccceEEEEec--ccceeecccc
Confidence 45688888876 2 24899999988 444333333333 567788865555555443 889999983
Q ss_pred --CCCC-eeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEe
Q psy8285 369 --MNGK-EKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWE 410 (507)
Q Consensus 369 --~~~~-~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d 410 (507)
.+.. -+..+... +.+..+++++++..++. |..+|.|.+|-
T Consensus 297 ~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alaf--gd~~g~v~~wa 340 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNGSGISAFDISSNGDALAF--GDHEGHVNLWA 340 (1118)
T ss_pred ccCCCccceeEEccCCCcceeEEecCCCceEEE--ecccCcEeeec
Confidence 3321 12222222 45999999999999999 89999999997
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-08 Score=60.69 Aligned_cols=33 Identities=39% Similarity=0.758 Sum_probs=30.5
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWN 37 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd 37 (507)
|++|.+.|++|+|+|++++ |+|++ .|++|+|||
T Consensus 7 ~~~h~~~i~~i~~~~~~~~-~~s~~--~D~~i~vwd 39 (39)
T PF00400_consen 7 FRGHSSSINSIAWSPDGNF-LASGS--SDGTIRVWD 39 (39)
T ss_dssp EESSSSSEEEEEEETTSSE-EEEEE--TTSEEEEEE
T ss_pred EcCCCCcEEEEEEeccccc-ceeeC--CCCEEEEEC
Confidence 6899999999999999886 88888 899999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00016 Score=64.25 Aligned_cols=276 Identities=13% Similarity=0.137 Sum_probs=157.2
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEe---------CCCCcEEEEeCCCceeEEEEeecCc-cE
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTN---------TCTEYIDLWHEQEERLIQKLRTHMH-QV 254 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~~dg~i~iwd~~~~~~~~~~~~~~~-~v 254 (507)
++++++|..+++.+-.... +..-.+..+|+++.++++. -..-.|.+||..+......+.-... +.
T Consensus 17 ~rv~viD~d~~k~lGmi~~-----g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~ 91 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT-----GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA 91 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE-----ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred ceEEEEECCCCcEEEEeec-----ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence 4899999999887665543 3345577899999988752 1234699999999888776653332 22
Q ss_pred --------EEEEeeCCEEEEEec--CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCC
Q psy8285 255 --------IAMCWNGNLLSCGTI--GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLD 324 (507)
Q Consensus 255 --------~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~ 324 (507)
..++-|+++++.... ...|.|.|+...+ ....+.- .+ ...+--+++.++...|+||.+.-..+....
T Consensus 92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k-vv~ei~~-PG-C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKK-VVGEIDT-PG-CWLIYPSGNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE-EEEEEEG-TS-EEEEEEEETTEEEEEETTSCEEEEEETSTS
T ss_pred eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCc-eeeeecC-CC-EEEEEecCCCceEEEecCCceEEEEECCCC
Confidence 223335666655433 3457777777654 2222221 11 111222234455556668988888887532
Q ss_pred CCCCee--eecCCCCC-eeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee--eeec-----------CCCeEEEEE
Q psy8285 325 AKRPQV--NNQCHLSA-VKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC--HVKT-----------DSQVTSILW 388 (507)
Q Consensus 325 ~~~~~~--~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~-----------~~~i~~~~~ 388 (507)
...... .+.....+ +..-++...+..++... ++|.|+-.|+....... .+.. .+...-+++
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S---y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~ 245 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS---YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY 245 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB---TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEe---cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee
Confidence 211111 11111122 22344444444555544 38999998887665321 1210 122344677
Q ss_pred CCCCCeEEEEe-ccCC-------CeEEEEeCCCccEEEEeeccccceeEEEECCCCC-EEEEEe-CCCcEEEEecCCCCc
Q psy8285 389 SEQYRELVTSH-GKQD-------CSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT-CVAAAS-ADETISIWNCFPRDK 458 (507)
Q Consensus 389 s~~~~~l~~~~-g~~d-------~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~-~dg~i~iw~~~~~~~ 458 (507)
++..+.|++.. ...+ ..|.++|+.+++.+..+.. ..++.+|+.+.+.+ +|++.+ .++.+.+||..+++.
T Consensus 246 ~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 246 HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp ETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred ccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 77666665531 1111 1588889999999999874 34688999999765 665554 578999999999999
Q ss_pred ccceeecCCCcceE
Q psy8285 459 KRKARQVGSGSSLE 472 (507)
Q Consensus 459 ~~~~~~~~~~~~~~ 472 (507)
.+..+..+....+-
T Consensus 325 ~~~~~~lG~~~~l~ 338 (342)
T PF06433_consen 325 VRSIEQLGETPTLI 338 (342)
T ss_dssp EEEE---SSS--EE
T ss_pred EeehhccCCCceEE
Confidence 98887766555443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00015 Score=64.46 Aligned_cols=237 Identities=15% Similarity=0.110 Sum_probs=143.4
Q ss_pred CCeEEEEECCCCceeEEEecCCCCC----CceEEEEEccCCCeEEEEe-CCCCcEEEEeCCCceeEEEEeecCccEEEEE
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDN----AYISCVAWKPRTTDLAVTN-TCTEYIDLWHEQEERLIQKLRTHMHQVIAMC 258 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 258 (507)
...|.+||..+..+..-+.++..+. .....+.++.+++++++.. +-...|.|.|+..++.+..+.. .++..-.-
T Consensus 66 tDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~iyP 144 (342)
T PF06433_consen 66 TDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWLIYP 144 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEEEEE
T ss_pred eeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEEEEe
Confidence 3479999999988877666654111 1223467888888888762 4456799999999888877652 33332233
Q ss_pred eeCCEEEEEecCCeEEEEECCCCCcCcee----eecCCCce-EEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeee
Q psy8285 259 WNGNLLSCGTIGGNILHYDVRTHSDYPTA----ITREGDVV-CGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNN 332 (507)
Q Consensus 259 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~v-~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~ 332 (507)
+.++-|.+.+.||.+.-..+....+.... +.....++ ..-++...+..++.-+ +|.|+--|+.... .+....+
T Consensus 145 ~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~~ 223 (342)
T PF06433_consen 145 SGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGKPW 223 (342)
T ss_dssp EETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEEEE
T ss_pred cCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccCcc
Confidence 35567888889999998888854322211 11222222 2334444444444344 7999888887641 1111111
Q ss_pred cC----------CCCCeeEEEEccCCCcEEEEEccC-----CC--CeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeE
Q psy8285 333 QC----------HLSAVKAIAWCPWEPTLLATGGGI-----CD--QTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYREL 395 (507)
Q Consensus 333 ~~----------~~~~v~~~~~~~~~~~~~~~~~~~-----~d--~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l 395 (507)
.. ..+.-.-+++++..+++++.-... .| ..|-++|+.+++.+..+....++.+++.+.+.+-+
T Consensus 224 ~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~ 303 (342)
T PF06433_consen 224 SLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPL 303 (342)
T ss_dssp ESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-E
T ss_pred cccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcE
Confidence 11 112344577777665555433210 11 26888899999999999887788899999988755
Q ss_pred EEEeccCCCeEEEEeCCCccEEEEeec
Q psy8285 396 VTSHGKQDCSLKMWEYPRLHLIEELKI 422 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d~~~~~~~~~~~~ 422 (507)
+.+....++.+.+||..+++++.++..
T Consensus 304 L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 304 LYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 442134678999999999999988864
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.2e-07 Score=80.10 Aligned_cols=163 Identities=16% Similarity=0.196 Sum_probs=118.9
Q ss_pred CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCC--CCCCeeeecCCCC
Q psy8285 261 GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLD--AKRPQVNNQCHLS 337 (507)
Q Consensus 261 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~--~~~~~~~~~~~~~ 337 (507)
+-. ++.+.+-.+.+-++.++- ...+. .++.|.++.|...++++..|. +|.|..+|++... ...+...+. |..
T Consensus 225 gyh-fs~G~sqqv~L~nvetg~--~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~S 299 (425)
T KOG2695|consen 225 GYH-FSVGLSQQVLLTNVETGH--QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDS 299 (425)
T ss_pred eee-ecccccceeEEEEeeccc--ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCc
Confidence 445 455557778888988864 33333 667888899998889999998 5999999998752 224445554 889
Q ss_pred CeeEEEEcc-CCCcEEEEEccCCCCeEEEEeCCCCCe---eeeeecC---CCeEEEEECCCCCeEEEEeccCCCeEEEEe
Q psy8285 338 AVKAIAWCP-WEPTLLATGGGICDQTVRLWNSMNGKE---KCHVKTD---SQVTSILWSEQYRELVTSHGKQDCSLKMWE 410 (507)
Q Consensus 338 ~v~~~~~~~-~~~~~~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~---~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d 410 (507)
.|+++..-. ++..+++++ ++|+|.+||++.-++ +....+| ....-+...+....+++ +++|...+||.
T Consensus 300 svtslq~Lq~s~q~LmaS~---M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s--~GdDcytRiWs 374 (425)
T KOG2695|consen 300 SVTSLQILQFSQQKLMASD---MTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS--VGDDCYTRIWS 374 (425)
T ss_pred chhhhhhhccccceEeecc---CcCceeEeeehhhhcccceeeeecccccccccccccccccceEEE--ccCeeEEEEEe
Confidence 999988776 555566644 599999999988776 7777776 23344556777788888 78999999999
Q ss_pred CCCccEEEEeeccc----cceeEEEEC
Q psy8285 411 YPRLHLIEELKIHQ----ERILSAVLS 433 (507)
Q Consensus 411 ~~~~~~~~~~~~~~----~~i~~~~~s 433 (507)
++.+..+.+++-.. ..+.+++|.
T Consensus 375 l~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 375 LDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cccCceeeccCCCCccccccccceehh
Confidence 99999998876432 234555554
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.4e-05 Score=73.38 Aligned_cols=276 Identities=12% Similarity=0.049 Sum_probs=159.5
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCC----CCceE--EEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecC
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYD----NAYIS--CVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHM 251 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~----~~~v~--~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~ 251 (507)
+++++.++.|+-+|..+|+..-...... . ...+. .+... ++..++++ +.+|.|.-+|.++++.+.......
T Consensus 64 vy~~~~~g~l~AlD~~tG~~~W~~~~~~-~~~~~~~~~~~~g~~~~-~~~~V~v~-~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 64 MYFTTSHSALFALDAATGKVLWRYDPKL-PADRGCCDVVNRGVAYW-DPRKVFFG-TFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred EEEeCCCCcEEEEECCCChhhceeCCCC-CccccccccccCCcEEc-cCCeEEEe-cCCCeEEEEECCCCCEeeeecCCC
Confidence 6666778999999999998776655432 1 00010 11111 22577777 889999999999999987776433
Q ss_pred cc-----E-EEEEeeCCEEEEEe---------cCCeEEEEECCCCCcCceeeecCC-------------------Cce-E
Q psy8285 252 HQ-----V-IAMCWNGNLLSCGT---------IGGNILHYDVRTHSDYPTAITREG-------------------DVV-C 296 (507)
Q Consensus 252 ~~-----v-~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~-------------------~~v-~ 296 (507)
.. + ......+..++.++ .++.+..+|..+++..-....... ..+ .
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~ 220 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWA 220 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccC
Confidence 21 1 12223445555554 367889999988763322211111 001 1
Q ss_pred EEEEcCCCCEEEEEe-CC------------------cEEEEEcCCCCCCCCeeeecCCCCCe------eEEEEc----cC
Q psy8285 297 GLKWSPNGRYLASGS-NN------------------TVKIWDFRQLDAKRPQVNNQCHLSAV------KAIAWC----PW 347 (507)
Q Consensus 297 ~~~~~~~~~~l~~~~-d~------------------~i~i~d~~~~~~~~~~~~~~~~~~~v------~~~~~~----~~ 347 (507)
..++.+.+..++.++ ++ .|.-+|.+++ +..-....-.... ....+. -+
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG---~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG---KVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC---CEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 234454555666665 44 6888888887 4444432111100 001111 12
Q ss_pred CC--cEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEe----------------ccCCCeEEEE
Q psy8285 348 EP--TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSH----------------GKQDCSLKMW 409 (507)
Q Consensus 348 ~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~----------------g~~d~~i~v~ 409 (507)
+. .+++.+.. +|.+...|.++|+.+...... ...++.+| ..+++.. ...+|.+.-+
T Consensus 298 g~~~~~V~~g~~--~G~l~ald~~tG~~~W~~~~~--~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 298 GKPVPAIVHAPK--NGFFYVLDRTTGKLISARPEV--EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred CCeeEEEEEECC--CceEEEEECCCCcEeeEeEee--ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 22 24444443 899999999999988776532 11233344 2233210 1246789999
Q ss_pred eCCCccEEEEeeccc--------cceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeec
Q psy8285 410 EYPRLHLIEELKIHQ--------ERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQV 465 (507)
Q Consensus 410 d~~~~~~~~~~~~~~--------~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 465 (507)
|+.+++.+.+..... .+...-.....+..|+.++.||.|+.+|..+++.+...+..
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECC
Confidence 999999887765331 11111011125578888999999999999999988776543
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.3e-06 Score=83.34 Aligned_cols=183 Identities=17% Similarity=0.138 Sum_probs=132.8
Q ss_pred CCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCcc
Q psy8285 174 GYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQ 253 (507)
Q Consensus 174 s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 253 (507)
+|+.++-++....+..+|+.+.+..+...+. ...|+-|.. +++++++| ...|+|.+-|.++.+.+.++..|.+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~---a~~v~imR~--Nnr~lf~G-~t~G~V~LrD~~s~~~iht~~aHs~s 219 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVS---ASGVTIMRY--NNRNLFCG-DTRGTVFLRDPNSFETIHTFDAHSGS 219 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeecc---CCceEEEEe--cCcEEEee-cccceEEeecCCcCceeeeeeccccc
Confidence 5667888888888999999998887777663 334655554 57788888 99999999999999999999999999
Q ss_pred EEEEEeeCCEEEEEec---------CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCC-CEEEEEe-CCcEEEEEcCC
Q psy8285 254 VIAMCWNGNLLSCGTI---------GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNG-RYLASGS-NNTVKIWDFRQ 322 (507)
Q Consensus 254 v~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~ 322 (507)
+.++...|+.|++++. |.-|+|||++..+. ...+.-+.++ .-+.|+|.- ..+++++ .|...+-|..+
T Consensus 220 iSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 220 ISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eeeeeccCCeEEEeecccccccccccchhhhhhhhhhhc-cCCcccccCc-hhhhhcccccceEEEEecccceeeccccc
Confidence 9999999999999875 44588999998652 2223323332 335677743 3455555 59999999443
Q ss_pred CCCC-CCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEe
Q psy8285 323 LDAK-RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWN 367 (507)
Q Consensus 323 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d 367 (507)
.... ..+.........+..+.+++.+. .++.+.. +|.|.+|-
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~--~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSNGD-ALAFGDH--EGHVNLWA 340 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCCCc-eEEEecc--cCcEeeec
Confidence 2221 22333333455699999999885 4454443 99999997
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.2e-05 Score=75.80 Aligned_cols=205 Identities=15% Similarity=0.154 Sum_probs=129.6
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC--CC-CcEEEEeCCCceeEEEEee-cCccEEEEEee
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT--CT-EYIDLWHEQEERLIQKLRT-HMHQVIAMCWN 260 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~d-g~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~ 260 (507)
..+.+-|-. +...+.... ....+..-+|+|++..++...- .. ..+.++++.+++....... ........+.|
T Consensus 173 ~~l~~~D~d-g~~~~~l~~---~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspD 248 (425)
T COG0823 173 YELALGDYD-GYNQQKLTD---SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPD 248 (425)
T ss_pred ceEEEEccC-CcceeEecc---cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCC
Confidence 345555544 443333333 4567888899999988765422 22 4599999998876555541 22233344447
Q ss_pred CCEEEEE-ecCCe--EEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC--C--cEEEEEcCCCCCCCCeeeec
Q psy8285 261 GNLLSCG-TIGGN--ILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN--N--TVKIWDFRQLDAKRPQVNNQ 333 (507)
Q Consensus 261 ~~~l~~~-~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--~--~i~i~d~~~~~~~~~~~~~~ 333 (507)
|+.|+.. ..||. |+++|+.... ...+....+.-..-.|+|||+.++..+| | .|.+++.+.. ....+.
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~----~~~riT 322 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS----QVTRLT 322 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC----ceeEee
Confidence 7766554 45564 6677777665 3334444444447789999999999885 4 4666666654 223333
Q ss_pred CCCCCeeEEEEccCCCcEEEEEccCCCCe--EEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEecc
Q psy8285 334 CHLSAVKAIAWCPWEPTLLATGGGICDQT--VRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGK 401 (507)
Q Consensus 334 ~~~~~v~~~~~~~~~~~~~~~~~~~~d~~--i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~ 401 (507)
.....-....|+|||++++..... +|. |.+.|+.++...+.+..........|.|+++.+...++.
T Consensus 323 ~~~~~~~~p~~SpdG~~i~~~~~~--~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 323 FSGGGNSNPVWSPDGDKIVFESSS--GGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred ccCCCCcCccCCCCCCEEEEEecc--CCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 233333388899999888887742 344 777787777656666665566677899999998885433
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.8e-06 Score=78.37 Aligned_cols=186 Identities=17% Similarity=0.125 Sum_probs=116.9
Q ss_pred ceeeecCCCceEEEEEcCCCCEEEEEe--C-C--cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC
Q psy8285 285 PTAITREGDVVCGLKWSPNGRYLASGS--N-N--TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC 359 (507)
Q Consensus 285 ~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 359 (507)
...+......+..-+|+|+++.++... . + .+.++|+..+.. ..... ..+.-...+|+|||++++.+.....
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~---~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR---PVILN-FNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc---ceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence 334444455677788999998877665 2 3 599999998732 22222 3444567899999999998887633
Q ss_pred CCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCC--eEEEEeCCCccEEEEeeccccceeEEEECCCCC
Q psy8285 360 DQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDC--SLKMWEYPRLHLIEELKIHQERILSAVLSPDQT 437 (507)
Q Consensus 360 d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~ 437 (507)
.-.|.++|+..+...+.....+.-+.-.|+|||++++.++ +..| .|.+++...... ..+....+.-....|+|||+
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~ 338 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGD 338 (425)
T ss_pred CccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCC
Confidence 4467788888777444223334445789999999999863 4455 466667665544 33332333333778999999
Q ss_pred EEEEEeCC-Cc--EEEEecCCCCcccceeecCCCcceEEeec
Q psy8285 438 CVAAASAD-ET--ISIWNCFPRDKKRKARQVGSGSSLEFAIL 476 (507)
Q Consensus 438 ~l~s~~~d-g~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (507)
+|+..+.. |. |.+.++.++...+.+..........+++.
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~n 380 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPN 380 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCC
Confidence 99877743 44 66666665554333333333333334333
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-05 Score=70.82 Aligned_cols=233 Identities=10% Similarity=0.058 Sum_probs=136.2
Q ss_pred ccceeeeeeCCCC---EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc
Q psy8285 165 DFYTSGLDWGYHD---TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE 241 (507)
Q Consensus 165 ~~~i~~~~~s~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~ 241 (507)
...|..+++||.+ +..++.+..|.|.|+++......+.. ...+.+++|.-+....+.+|..+|.|.|||++..
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a----~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA----YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccceeeeheec----cCCceeeeeccCCcceeEEeccCceEEEEEccCC
Confidence 3457889999953 44567899999999999887766664 3789999999988777777699999999999865
Q ss_pred ee-EEEEee--cCccEEEEEe--------eCCEEEEEecCCeEEEEECCCCCc--CceeeecCCCceEEEEEcCCCCEEE
Q psy8285 242 RL-IQKLRT--HMHQVIAMCW--------NGNLLSCGTIGGNILHYDVRTHSD--YPTAITREGDVVCGLKWSPNGRYLA 308 (507)
Q Consensus 242 ~~-~~~~~~--~~~~v~~~~~--------~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~ 308 (507)
+- +..+.+ ...+|..++. .+.+++....+ +..|++..... +.....+..+...++.+.+-.+.++
T Consensus 269 ~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l 346 (463)
T KOG1645|consen 269 EGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLL 346 (463)
T ss_pred CchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEE
Confidence 32 222221 2334544444 24555555433 44566543321 1112223344555566665444443
Q ss_pred EEe--C----------------CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC
Q psy8285 309 SGS--N----------------NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN 370 (507)
Q Consensus 309 ~~~--d----------------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 370 (507)
... + -.-.+|..+........... +. -..+.-.++...++..+.. .+.+.+||..+
T Consensus 347 ~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl--~t--~~ai~~~~~nn~iv~~gd~--tn~lil~D~~s 420 (463)
T KOG1645|consen 347 LTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKL--ST--TQAIRAVEDNNYIVVVGDS--TNELILQDPHS 420 (463)
T ss_pred EEecCCCCCccceeeeeeeccccCceeeeecccccCCccccc--cc--ccceeccccccEEEEecCC--cceeEEeccch
Confidence 332 1 11112221111000000000 11 1122223455455555543 68999999999
Q ss_pred CCeeeeeecCCCeEEEEECCC--CCeEEEEeccCCCeEEEEeCC
Q psy8285 371 GKEKCHVKTDSQVTSILWSEQ--YRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 371 ~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~g~~d~~i~v~d~~ 412 (507)
.+.++.+....++..++...- +.+|++. .|..++||...
T Consensus 421 ~evvQ~l~~~epv~Dicp~~~n~~syLa~L---Td~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSEPVLDICPNDTNGSSYLALL---TDDRVHIYKNE 461 (463)
T ss_pred hheeeecccCcceeecceeecCCcchhhhe---ecceEEEEecC
Confidence 999999988877877766543 4466653 47788888754
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.8e-06 Score=80.09 Aligned_cols=182 Identities=16% Similarity=0.189 Sum_probs=130.3
Q ss_pred CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCcee
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTA 287 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 287 (507)
...++|++++ ++.++.+ +.+|.|++++.+. .. .+...|... .-+|.++++|+.||.|.|-.+-+.+.. .
T Consensus 39 ~D~is~~av~--~~~~~~G-tH~g~v~~~~~~~-~~-~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~--~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALG-THRGAVYLTTCQG-NP-KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEI--T 107 (846)
T ss_pred hhHHHHHHhh--cceeeec-cccceEEEEecCC-cc-ccccccccc----ccCCceEEEecCCCcEEEeeccCCccc--e
Confidence 4567777776 5688888 9999999999764 33 333344443 446999999999999999988876632 2
Q ss_pred eecCCCceEEEEEcCC-----CCEEEEEeC-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC
Q psy8285 288 ITREGDVVCGLKWSPN-----GRYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ 361 (507)
Q Consensus 288 ~~~~~~~v~~~~~~~~-----~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~ 361 (507)
......++.+++++|+ .+.+++|+. | +.++.-+-.+....+ .+....++|.++.|.. .+++-++ |-
T Consensus 108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g---~lIAWan---d~ 179 (846)
T KOG2066|consen 108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRG---NLIAWAN---DD 179 (846)
T ss_pred eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecC---cEEEEec---CC
Confidence 2345678999999997 467888886 7 777765433222222 4555778999999964 5777776 78
Q ss_pred eEEEEeCCCCCeeeeeecCC-------CeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 362 TVRLWNSMNGKEKCHVKTDS-------QVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 362 ~i~i~d~~~~~~~~~~~~~~-------~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
-|++||+.+++.+..++.+. -...+.|.++.+.++- ...+|+|..++
T Consensus 180 Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG----W~d~v~i~~I~ 233 (846)
T KOG2066|consen 180 GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG----WGDSVKICSIK 233 (846)
T ss_pred CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe----cCCeEEEEEEe
Confidence 89999999988877665431 2456888877665543 45578888876
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.1e-05 Score=74.51 Aligned_cols=205 Identities=12% Similarity=0.088 Sum_probs=135.9
Q ss_pred EEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCcc-EEEEEe-e-CCEEEEEecCC-----eEEEEECCCCCc---
Q psy8285 215 AWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQ-VIAMCW-N-GNLLSCGTIGG-----NILHYDVRTHSD--- 283 (507)
Q Consensus 215 ~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~-~-~~~l~~~~~dg-----~i~i~d~~~~~~--- 283 (507)
+|++.+..++.+ +.+|.|.+++ +..+.+..++.+... +..+-. + ..+|++.+.|+ .+++|+++..+.
T Consensus 30 c~~s~~~~vvig-t~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIG-TADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEe-eccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 456778888888 9999999987 334555777777776 333333 3 35777777665 489999975421
Q ss_pred --Cc--eeeec-----CCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCC-CCCCCeeeecCCCCCeeEEEEccCCCcEE
Q psy8285 284 --YP--TAITR-----EGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQL-DAKRPQVNNQCHLSAVKAIAWCPWEPTLL 352 (507)
Q Consensus 284 --~~--~~~~~-----~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 352 (507)
+. ..... ...++.+++.+.+-+.+|+|- +|.|..+.-.-. +......-......+|+.+.+..++..++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 11 01112 356788999999988899988 599998853211 00112222223567899999999987744
Q ss_pred EEEccCCCCeEEEEeCCCCCee-eeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee-ccccce
Q psy8285 353 ATGGGICDQTVRLWNSMNGKEK-CHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK-IHQERI 427 (507)
Q Consensus 353 ~~~~~~~d~~i~i~d~~~~~~~-~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~-~~~~~i 427 (507)
.++. -..|.+|.+....+. ..+..+ ..+.|..+++....++++ + ...+.+|+.+...+-..+. +|....
T Consensus 188 Fv~T---t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca-~--~e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 188 FVAT---TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA-G--SEFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred EEEe---cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe-c--CceEEEEcCCCcceeeeecCCCeEEE
Confidence 4444 578999998744433 335555 478888888776656653 3 5689999988777766676 665443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.8e-05 Score=69.31 Aligned_cols=143 Identities=13% Similarity=0.091 Sum_probs=78.3
Q ss_pred ccEEEEEe--eCCEEEEEe--cCC---eEEEEECCCCCcCceeeecCCCce---EEEEEc-CCCCEEEEEe--C--CcEE
Q psy8285 252 HQVIAMCW--NGNLLSCGT--IGG---NILHYDVRTHSDYPTAITREGDVV---CGLKWS-PNGRYLASGS--N--NTVK 316 (507)
Q Consensus 252 ~~v~~~~~--~~~~l~~~~--~dg---~i~i~d~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~l~~~~--d--~~i~ 316 (507)
.-+..+.| +++.|+..- ++. .+.++|..++.............| ....|. +++..++..+ + ..|.
T Consensus 184 ~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly 263 (353)
T PF00930_consen 184 YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLY 263 (353)
T ss_dssp EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEE
T ss_pred cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEE
Confidence 34667777 444243332 222 366677766542222222222222 245554 6776655554 4 4566
Q ss_pred EEEcCCCCCCCCeeeecCCCCCeeE-EEEccCCCcEEEEEccC--CCCeEEEEeCCCCCeeeeeecCCCe-EEEEECCCC
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLSAVKA-IAWCPWEPTLLATGGGI--CDQTVRLWNSMNGKEKCHVKTDSQV-TSILWSEQY 392 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~i-~~~~~s~~~ 392 (507)
+++...+ ....+....-.|.. +.++++++.++.++.+. ....+...++..+.....+...... ..+.|||++
T Consensus 264 ~~~~~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg 339 (353)
T PF00930_consen 264 LYDLDGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDG 339 (353)
T ss_dssp EEETTSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTS
T ss_pred EEccccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCC
Confidence 6666654 34455545556644 77889888888877642 2346666677723444555444322 699999999
Q ss_pred CeEEEE
Q psy8285 393 RELVTS 398 (507)
Q Consensus 393 ~~l~~~ 398 (507)
++++..
T Consensus 340 ~y~v~~ 345 (353)
T PF00930_consen 340 KYYVDT 345 (353)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 999875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-05 Score=77.04 Aligned_cols=180 Identities=14% Similarity=0.180 Sum_probs=124.3
Q ss_pred ccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCee
Q psy8285 252 HQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQV 330 (507)
Q Consensus 252 ~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~ 330 (507)
..+.|+++.++.|+.|+.+|.|++++..... .....|... ..+|.++++|+ ||+|.|-.+-+. +...
T Consensus 40 D~is~~av~~~~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~---~~~~ 107 (846)
T KOG2066|consen 40 DAISCCAVHDKFFALGTHRGAVYLTTCQGNP---KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTD---DEIT 107 (846)
T ss_pred hHHHHHHhhcceeeeccccceEEEEecCCcc---ccccccccc------ccCCceEEEecCCCcEEEeeccCC---ccce
Confidence 4566777789999999999999999987532 333344433 56899999999 599999988776 4444
Q ss_pred eecCCCCCeeEEEEccC----CCcEEEEEccCCCCeEEEEeCC---CCCeeeeeecCCCeEEEEECCCCCeEEEEeccCC
Q psy8285 331 NNQCHLSAVKAIAWCPW----EPTLLATGGGICDQTVRLWNSM---NGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQD 403 (507)
Q Consensus 331 ~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~d~~i~i~d~~---~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d 403 (507)
++. ...++.+++++|+ ....+++|+. -| +.++.-+ ....+..-...+.|.++.|. |.++|- .+ |
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~--ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAW--an-d 178 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGM--AG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAW--AN-D 178 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCc--ce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEE--ec-C
Confidence 443 5578999999998 2345666652 44 7666532 22223223345899999995 788888 44 4
Q ss_pred CeEEEEeCCCccEEEEeeccccce------eEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 404 CSLKMWEYPRLHLIEELKIHQERI------LSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 404 ~~i~v~d~~~~~~~~~~~~~~~~i------~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
--|+|||+.+.+.+..++.....+ ..+.|.++.+ |+.|= .-+|+|..++
T Consensus 179 ~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 179 DGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGW-GDSVKICSIK 233 (846)
T ss_pred CCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEec-CCeEEEEEEe
Confidence 459999999998888776433333 3467776655 44343 3479999998
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00021 Score=72.55 Aligned_cols=209 Identities=11% Similarity=0.158 Sum_probs=132.8
Q ss_pred cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcC----C
Q psy8285 250 HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFR----Q 322 (507)
Q Consensus 250 ~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~----~ 322 (507)
....|.++.| +++.++.+...|.|.+-|..+.. ......-...|.+++|+||++.++..+. +++.+-+-. .
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 3457899999 78889999999999999887654 4445556778999999999999888875 555443320 0
Q ss_pred C----------------CCCCCeeeecCC---------------------CCCeeEEEEccCCCcEEEEEccC-CC-CeE
Q psy8285 323 L----------------DAKRPQVNNQCH---------------------LSAVKAIAWCPWEPTLLATGGGI-CD-QTV 363 (507)
Q Consensus 323 ~----------------~~~~~~~~~~~~---------------------~~~v~~~~~~~~~~~~~~~~~~~-~d-~~i 363 (507)
. ...+.-..+.+. ...=+.+.|--||.++.++.-.. .+ +.|
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 0 000111111110 11224589999996555533211 13 799
Q ss_pred EEEeCCCCCeeeeee-cCCCeEEEEECCCCCeEEEEe-ccCCCeEEEEeCCC---ccEEEEeeccccceeEEEECCCCCE
Q psy8285 364 RLWNSMNGKEKCHVK-TDSQVTSILWSEQYRELVTSH-GKQDCSLKMWEYPR---LHLIEELKIHQERILSAVLSPDQTC 438 (507)
Q Consensus 364 ~i~d~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~~~-g~~d~~i~v~d~~~---~~~~~~~~~~~~~i~~~~~s~~~~~ 438 (507)
++||-. |..-..-. ..+.-.+++|-|.|..+++.- -..|+.|.+|.-.. ++....+.....++..++|+.++..
T Consensus 225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdi 303 (1265)
T KOG1920|consen 225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDI 303 (1265)
T ss_pred EEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCc
Confidence 999965 44322222 224567899999999998852 22355799998432 2222222333445899999999999
Q ss_pred EEE---EeCCCcEEEEecCCCCcccc
Q psy8285 439 VAA---ASADETISIWNCFPRDKKRK 461 (507)
Q Consensus 439 l~s---~~~dg~i~iw~~~~~~~~~~ 461 (507)
|+. ......|++|-+.+-.-..+
T Consensus 304 LAv~~~~~e~~~v~lwt~~NyhWYLK 329 (1265)
T KOG1920|consen 304 LAVVTSNLENSLVQLWTTGNYHWYLK 329 (1265)
T ss_pred eeeeecccccceEEEEEecCeEEEEE
Confidence 987 44445599999987654333
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.0013 Score=62.06 Aligned_cols=116 Identities=15% Similarity=0.105 Sum_probs=82.4
Q ss_pred CCeeEEEEccCCCcEEEEEccC--CCC----eEEEEeCCCCCe----eeeeecCCCeEEEEECCCCCeEEEEeccCCCeE
Q psy8285 337 SAVKAIAWCPWEPTLLATGGGI--CDQ----TVRLWNSMNGKE----KCHVKTDSQVTSILWSEQYRELVTSHGKQDCSL 406 (507)
Q Consensus 337 ~~v~~~~~~~~~~~~~~~~~~~--~d~----~i~i~d~~~~~~----~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i 406 (507)
....++.|+-..++.+.+-..+ .+| .-.+|+...++. +..+...+.+.+++++|+...++. |..||+|
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvl--GC~DgSi 283 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVL--GCEDGSI 283 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEE--EecCCeE
Confidence 3445777876544444433211 122 245677765543 223455678999999999999999 8899999
Q ss_pred EEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 407 KMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 407 ~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
.+||...+... +....-..+.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 99998765332 2233455788999999999999999999999999743
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=2e-07 Score=90.00 Aligned_cols=197 Identities=16% Similarity=0.177 Sum_probs=145.5
Q ss_pred eeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC---CcEE
Q psy8285 242 RLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN---NTVK 316 (507)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d---~~i~ 316 (507)
+..+.+..|....+|++| +.+.|+.|+..|.|++|++.++. .......|..+|+-+.-+.||..+++.+. --..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~-~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS-MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc-ccccccccccccccccccCCcceeeeeccccCchHH
Confidence 345567778889999999 67899999999999999999987 66778899999999999999998777662 3578
Q ss_pred EEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-----CCeEEEEECCC
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-----SQVTSILWSEQ 391 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~i~~~~~s~~ 391 (507)
+|++... ..+.+.+. .-.++.|+.....-++ |.. .....+||+.++.++.++-.. ..-+...|+|+
T Consensus 1171 LW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~r~~-gt~--~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~ 1241 (1516)
T KOG1832|consen 1171 LWDASST--GGPRHSFD----EDKAVKFSNSLQFRAL-GTE--ADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPC 1241 (1516)
T ss_pred Hhccccc--cCcccccc----ccceeehhhhHHHHHh-ccc--ccceEEEecccCcHHHHhcCcchhhhhhccccccCCC
Confidence 9998752 24444443 3357888875433333 322 567899999999877763221 23477899999
Q ss_pred CCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccc
Q psy8285 392 YRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRK 461 (507)
Q Consensus 392 ~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 461 (507)
...++- || .+||++..+.++.|..... -..-.|+|.|..++.-+ -|||+++-+.+..
T Consensus 1242 D~LIln-----dG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1242 DTLILN-----DG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS-----EIWDMRTFKLLHS 1298 (1516)
T ss_pred cceEee-----Cc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec-----hhhhhHHHHHHhc
Confidence 998876 55 5899998888877765442 23346999998887665 4899988766554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00014 Score=68.90 Aligned_cols=221 Identities=15% Similarity=0.203 Sum_probs=116.0
Q ss_pred cceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 166 FYTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 166 ~~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.+...+.++|++ +++++.+|.-.|+.......... +.-...+|.+.++ +|+- ...+.|.|+.--+.+..
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~--------G~g~~~vw~~~n~-yAv~-~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF--------GSGLSFVWSSRNR-YAVL-ESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE--------EE-SEEEE-TSSE-EEEE--TTS-EEEEETTEE-TT
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc--------CceeEEEEecCcc-EEEE-ECCCeEEEEEcCccccc
Confidence 345679999988 88889999999998544333221 2346788998554 5555 56888999743233332
Q ss_pred EEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCC-
Q psy8285 245 QKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQL- 323 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~- 323 (507)
..++.. ..+..+-. |.+|...+. +.|.+||+.+++ ....+.. .+|..+.|++++.+++..++..+.+++.+..
T Consensus 103 k~i~~~-~~~~~If~-G~LL~~~~~-~~i~~yDw~~~~-~i~~i~v--~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~ 176 (443)
T PF04053_consen 103 KSIKLP-FSVEKIFG-GNLLGVKSS-DFICFYDWETGK-LIRRIDV--SAVKYVIWSDDGELVALVTKDSIYILKYNLEA 176 (443)
T ss_dssp -----S-S-EEEEE--SSSEEEEET-TEEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHH
T ss_pred eEEcCC-cccceEEc-CcEEEEECC-CCEEEEEhhHcc-eeeEEec--CCCcEEEEECCCCEEEEEeCCeEEEEEecchh
Confidence 233321 12333333 777777764 489999999875 3333332 2489999999999999999888888876531
Q ss_pred -------CCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEE
Q psy8285 324 -------DAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELV 396 (507)
Q Consensus 324 -------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 396 (507)
.....+.....-...|.+..|..+ -++.+.. . .++. +..|+.-.......++.=+.+.|+.+.+.
T Consensus 177 ~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~---~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly 248 (443)
T PF04053_consen 177 VAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTS---N-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLY 248 (443)
T ss_dssp HHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-T---T-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEE
T ss_pred cccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcC---C-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEE
Confidence 000133444333578899999765 4555443 3 6666 33444322222234566666666666666
Q ss_pred EEeccCCCeEEEEeCC
Q psy8285 397 TSHGKQDCSLKMWEYP 412 (507)
Q Consensus 397 ~~~g~~d~~i~v~d~~ 412 (507)
. ...++.+..+.+.
T Consensus 249 ~--~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 249 L--IDRDGNVISYELD 262 (443)
T ss_dssp E--E-TT--EEEEE--
T ss_pred E--EECCCCEEEEEEC
Confidence 6 4567777776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.7e-05 Score=76.81 Aligned_cols=262 Identities=18% Similarity=0.217 Sum_probs=153.6
Q ss_pred eeeeCCCC-EEEEE-----cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 170 GLDWGYHD-TLAVA-----LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 170 ~~~~s~~~-~~~~~-----~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
-..|+|.. ++++. ..|.|.||- ++|++....+.+ -.+++++|+|..-.|+.+ -.-|.+.+|...+.+.
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P----~hatSLCWHpe~~vLa~g-we~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYP----VHATSLCWHPEEFVLAQG-WEMGVSDVQKTNTTET 93 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccc----eehhhhccChHHHHHhhc-cccceeEEEecCCcee
Confidence 37899987 66553 578899885 466655444432 236789999998778877 8999999999888777
Q ss_pred EEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC-ceeeecCC----CceEEEEEcCCCC------EEEEE
Q psy8285 244 IQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY-PTAITREG----DVVCGLKWSPNGR------YLASG 310 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~----~~v~~~~~~~~~~------~l~~~ 310 (507)
......|..+|..+.| +|..++++..-|.+.+|........ ...+..|. -...|...++++. ..++.
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVt 173 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVT 173 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhcc
Confidence 7777789999999999 7999999999999999988743211 11122221 1245566677642 12333
Q ss_pred eC-CcEE-EEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEE
Q psy8285 311 SN-NTVK-IWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILW 388 (507)
Q Consensus 311 ~d-~~i~-i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~ 388 (507)
+| ..+- .++.+.. ...... .|.+ .|+|..+++++- +|+|+..|- +|++....+..+.| .+-|
T Consensus 174 gDe~alD~~fnwk~~---~a~rs~-~ksg-------v~~g~~F~~~~~---~GtVyyvdq-~g~~~~V~k~dS~v-QmLf 237 (1416)
T KOG3617|consen 174 GDESALDEPFNWKES---LAERSD-EKSG-------VPKGTEFLFAGK---SGTVYYVDQ-NGRQRTVHKLDSEV-QMLF 237 (1416)
T ss_pred CchhhhcccccCccc---hhhccc-cccC-------CCCCcEEEEEcC---CceEEEEcC-CCcEEEEEEccchH-HHHH
Confidence 33 3332 3333211 001111 1111 356655666554 899888883 45544444333221 1122
Q ss_pred CCCCCeEEEE----------------------------eccCCCeEEEEeCCCc----cEEEEeeccccceeEEEECCCC
Q psy8285 389 SEQYRELVTS----------------------------HGKQDCSLKMWEYPRL----HLIEELKIHQERILSAVLSPDQ 436 (507)
Q Consensus 389 s~~~~~l~~~----------------------------~g~~d~~i~v~d~~~~----~~~~~~~~~~~~i~~~~~s~~~ 436 (507)
.+...-+.+. .|+..|.|.+=.. .| .+...+ .....+++++++..+
T Consensus 238 ~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEs-sGvLr~~eKyg~-e~ge~~~c~cY~~~~ 315 (1416)
T KOG3617|consen 238 MGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSES-SGVLRKSEKYGL-ELGEGILCMCYGEKE 315 (1416)
T ss_pred hcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccc-cccccCCcchhh-hcCCceEEEEEeccc
Confidence 2211111110 0111222211110 01 000011 123568999999999
Q ss_pred CEEEEEeCCCcEEEEecCC
Q psy8285 437 TCVAAASADETISIWNCFP 455 (507)
Q Consensus 437 ~~l~s~~~dg~i~iw~~~~ 455 (507)
..|+.|...|.+.+|.-.+
T Consensus 316 ~~l~agt~~gnv~~w~~v~ 334 (1416)
T KOG3617|consen 316 IRLWAGTKEGNVTIWLDVN 334 (1416)
T ss_pred eEEEecccCCcEEEeeecC
Confidence 9999999999999997544
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0022 Score=61.77 Aligned_cols=247 Identities=11% Similarity=0.069 Sum_probs=134.6
Q ss_pred eEEEEEccCCCeEEEEeCCCC----cEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCC-----------eE
Q psy8285 211 ISCVAWKPRTTDLAVTNTCTE----YIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGG-----------NI 273 (507)
Q Consensus 211 v~~~~~~~~~~~l~~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg-----------~i 273 (507)
+....++|+++++|.+-+..| .++++|+.+++.+...-.... ...+.| +++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 346789999999997634444 599999999977654322111 123888 556665554332 37
Q ss_pred EEEECCCCCcC-ceeeecCCCc--eEEEEEcCCCCEEEEEe----C-CcEEEEEcCCCC-CCCCeeeecCCCCCee-EEE
Q psy8285 274 LHYDVRTHSDY-PTAITREGDV--VCGLKWSPNGRYLASGS----N-NTVKIWDFRQLD-AKRPQVNNQCHLSAVK-AIA 343 (507)
Q Consensus 274 ~i~d~~~~~~~-~~~~~~~~~~--v~~~~~~~~~~~l~~~~----d-~~i~i~d~~~~~-~~~~~~~~~~~~~~v~-~~~ 343 (507)
+.|.+.+.... ...+...... ...+..++|+++++... + ..+++.|+.... .......+......+. .+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888876533 2333333322 56788999999977644 2 457888887630 1123333333333443 343
Q ss_pred EccCCCcEEEEEccCCCCeEEEEeCCCCCe---eeeeecC-CCeEEEEECCCCCeEEEEeccCCC--eEEEEeCCCccEE
Q psy8285 344 WCPWEPTLLATGGGICDQTVRLWNSMNGKE---KCHVKTD-SQVTSILWSEQYRELVTSHGKQDC--SLKMWEYPRLHLI 417 (507)
Q Consensus 344 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~--~i~v~d~~~~~~~ 417 (507)
.. .+..++.+..+...+.|.-.++..... ...+..+ ..+.-..+...+.+|+.. ...++ .|+++++..+...
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~-~~~~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLS-YRENGSSRLRVYDLDDGKES 362 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEE-EEETTEEEEEEEETT-TEEE
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEE-EEECCccEEEEEECCCCcEE
Confidence 33 343444454433467888888887763 2233333 323333333445566653 34444 6899999833333
Q ss_pred EEeec-cccceeEEEECCCCCEE-EEE-eC--CCcEEEEecCCCCccc
Q psy8285 418 EELKI-HQERILSAVLSPDQTCV-AAA-SA--DETISIWNCFPRDKKR 460 (507)
Q Consensus 418 ~~~~~-~~~~i~~~~~s~~~~~l-~s~-~~--dg~i~iw~~~~~~~~~ 460 (507)
..+.. -.+.|..+...+++..+ ++. |. -+++.-||+.+++...
T Consensus 363 ~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 363 REIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred eeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 33332 34456666666665544 322 22 3678888888876543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00074 Score=64.08 Aligned_cols=196 Identities=11% Similarity=0.060 Sum_probs=103.4
Q ss_pred cEEEEeCCCceeEEEEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCc-----CceeeecCCCceEEEEEcCCCC
Q psy8285 232 YIDLWHEQEERLIQKLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSD-----YPTAITREGDVVCGLKWSPNGR 305 (507)
Q Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~ 305 (507)
.|+||+.. |+.+..+.-..+.+.++.| +...|+.-..||.+++||+..... ......-....+....+..+|-
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi 140 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI 140 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE
Confidence 48888854 5666666655589999999 677788888999999999864320 0000011111222223333453
Q ss_pred EEEEEeCCcEEEEE-cCCCCCCCCeeeecC-------CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeee
Q psy8285 306 YLASGSNNTVKIWD-FRQLDAKRPQVNNQC-------HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHV 377 (507)
Q Consensus 306 ~l~~~~d~~i~i~d-~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 377 (507)
.+.+ .++.+.+.. .......+....... +.....-..++.+....+.... ++.+.+.+-...+. +
T Consensus 141 vvLt-~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~---g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 141 VVLT-GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLAN---GETIYIIDENSFKQ---I 213 (410)
T ss_pred EEEC-CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEec---CCEEEEEEcccccc---c
Confidence 3333 334443332 221100000001110 0000000223333333333332 45555444322211 3
Q ss_pred ecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc-ccceeEEEECCCCC
Q psy8285 378 KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH-QERILSAVLSPDQT 437 (507)
Q Consensus 378 ~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~ 437 (507)
...+++..++.||+|+++|. -..+|.+.+....-.+.+.++... ......+.|.-++.
T Consensus 214 ~~~~~i~~iavSpng~~iAl--~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 214 DSDGPIIKIAVSPNGKFIAL--FTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred cCCCCeEEEEECCCCCEEEE--EECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 34468999999999999999 567899999887666666666543 33456677765543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0036 Score=59.08 Aligned_cols=264 Identities=15% Similarity=0.125 Sum_probs=166.8
Q ss_pred EEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE-eecCccEEEEEe--eCC-
Q psy8285 187 VYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL-RTHMHQVIAMCW--NGN- 262 (507)
Q Consensus 187 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~--~~~- 262 (507)
+.+++..+......... ......+...+++..+.+.......+...+.. ....... ......-..+.. .+.
T Consensus 13 ~~v~~~~~~~~~~~~~~----~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~ 87 (381)
T COG3391 13 VSVINTGTNKVTAAISL----GRGPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNK 87 (381)
T ss_pred eEEEeecccEEEEEeec----CCCCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCe
Confidence 66666666555544443 22566778888887666662333345555544 2222221 111122223333 444
Q ss_pred EEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe----CCcEEEEEcCCCCCCCCeeeecCCCCC
Q psy8285 263 LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS----NNTVKIWDFRQLDAKRPQVNNQCHLSA 338 (507)
Q Consensus 263 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~ 338 (507)
..+....+..|.+.|..+.........+. ....++++|+++.+.++. ++.+.+.|..+. +.......-..+
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---~~~~~~~vG~~P 162 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---KVTATIPVGNTP 162 (381)
T ss_pred EEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC---eEEEEEecCCCc
Confidence 55555566899999977655322222222 567799999998877765 277778887766 555554333334
Q ss_pred eeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee-----eeecCCCeEEEEECCCCCeEEEEe-ccCCCeEEEEeCC
Q psy8285 339 VKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC-----HVKTDSQVTSILWSEQYRELVTSH-GKQDCSLKMWEYP 412 (507)
Q Consensus 339 v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-----~~~~~~~i~~~~~s~~~~~l~~~~-g~~d~~i~v~d~~ 412 (507)
..++++|+|..++++... ++.|.+.|........ ..........+.++|+|.++.+.. ++.++.+...|..
T Consensus 163 -~~~a~~p~g~~vyv~~~~--~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~ 239 (381)
T COG3391 163 -TGVAVDPDGNKVYVTNSD--DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA 239 (381)
T ss_pred -ceEEECCCCCeEEEEecC--CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCC
Confidence 899999999888887754 8999999977666553 123334567899999999877742 1123689999998
Q ss_pred CccEEEE-eeccccceeEEEECCCCCEEEEEeCC-CcEEEEecCCCCccccee
Q psy8285 413 RLHLIEE-LKIHQERILSAVLSPDQTCVAAASAD-ETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 413 ~~~~~~~-~~~~~~~i~~~~~s~~~~~l~s~~~d-g~i~iw~~~~~~~~~~~~ 463 (507)
++..... .......-..+..+|+|..+.+.... +.+.+-|..+........
T Consensus 240 ~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 240 TGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred CceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 8777665 22211145678899999998887444 788888888766655433
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.7e-07 Score=85.23 Aligned_cols=202 Identities=19% Similarity=0.321 Sum_probs=133.5
Q ss_pred ccccceeeeeeCCCC---EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCC-eEEEEe---CCCCcEE
Q psy8285 163 INDFYTSGLDWGYHD---TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTT-DLAVTN---TCTEYID 234 (507)
Q Consensus 163 ~~~~~i~~~~~s~~~---~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~---~~dg~i~ 234 (507)
.+..++.|++|+-+. ++++| .+|.|.+-......-......++ +..++++++|++-.. .||++- -.|..+.
T Consensus 54 sdtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~-~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 54 SDTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPG-YARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred ccCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceeccc-ccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 344567788887643 56554 78999998876654432333444 788999999998654 444430 2356799
Q ss_pred EEeCCCc--eeE--EEEee-cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC-CCCE
Q psy8285 235 LWHEQEE--RLI--QKLRT-HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP-NGRY 306 (507)
Q Consensus 235 iwd~~~~--~~~--~~~~~-~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 306 (507)
|||+.++ .+. ..+.+ ......+++| +.+++.+|.....+.++|++... .....-....+..+...| .+.+
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~--~~~~svnTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL--DSVSSVNTKYVQGITVDPFSPNY 210 (783)
T ss_pred ceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh--hhhhhhhhhhcccceecCCCCCc
Confidence 9999876 221 12222 3344568888 67888899888899999998532 122222334566777888 7788
Q ss_pred EEEEeCCcEEEEE-cCCCCCCCCeeeecCCC----CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC
Q psy8285 307 LASGSNNTVKIWD-FRQLDAKRPQVNNQCHL----SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN 370 (507)
Q Consensus 307 l~~~~d~~i~i~d-~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 370 (507)
+++-.|+.|.+|| .++- ..++..+.... ..+..++|+|...-++++... ..++|+++|+..
T Consensus 211 ~cs~~dg~iAiwD~~rni--enpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R-dS~tIrlydi~~ 276 (783)
T KOG1008|consen 211 FCSNSDGDIAIWDTYRNI--ENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR-DSITIRLYDICV 276 (783)
T ss_pred eeccccCceeeccchhhh--ccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc-CcceEEEecccc
Confidence 9888899999999 3332 13333333222 248999999987666666542 468999999853
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0026 Score=60.46 Aligned_cols=195 Identities=12% Similarity=0.073 Sum_probs=105.3
Q ss_pred eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce------eEEEEeecCccEEEEEe
Q psy8285 186 SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER------LIQKLRTHMHQVIAMCW 259 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~ 259 (507)
.|.+|+.. |+........ .+.+.++.|+.+...+++ ..||.+++||+.... .+....-....+....+
T Consensus 62 ~I~iys~s-G~ll~~i~w~---~~~iv~~~wt~~e~LvvV--~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWD---SGRIVGMGWTDDEELVVV--QSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCC-CCEeEEEEEC---CCCEEEEEECCCCeEEEE--EcCCEEEEEeCCCceeechhhhccccCccccccccccc
Confidence 59999874 5555556663 378999999986655554 599999999986333 01111111222222233
Q ss_pred eCCEEEEEecCCeEEEEECCCCCcCceeeec----------CCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCC
Q psy8285 260 NGNLLSCGTIGGNILHYDVRTHSDYPTAITR----------EGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRP 328 (507)
Q Consensus 260 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~ 328 (507)
.++-++.-..++.+.+..--........+.. +........++.+....+... ++.+.+.+-... ..
T Consensus 136 ~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~---~~ 212 (410)
T PF04841_consen 136 YKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF---KQ 212 (410)
T ss_pred CCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc---cc
Confidence 2122333444555544432221101111100 000000023444444444444 355554443321 11
Q ss_pred eeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC--CCeEEEEECCCCCeEE
Q psy8285 329 QVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD--SQVTSILWSEQYRELV 396 (507)
Q Consensus 329 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~ 396 (507)
+. ..+++..++.||+++.+..... +|.+.+.+..-.+....+... .....+.|+-++..++
T Consensus 213 ---i~-~~~~i~~iavSpng~~iAl~t~---~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l 275 (410)
T PF04841_consen 213 ---ID-SDGPIIKIAVSPNGKFIALFTD---SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVL 275 (410)
T ss_pred ---cc-CCCCeEEEEECCCCCEEEEEEC---CCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEE
Confidence 22 3468999999999976666554 899999887666666666555 5677888876544333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.0022 Score=57.81 Aligned_cols=224 Identities=13% Similarity=0.122 Sum_probs=131.4
Q ss_pred CCEEEEEcCCeEEEEECC-CCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE--------
Q psy8285 176 HDTLAVALDTSVYTWNTK-TNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK-------- 246 (507)
Q Consensus 176 ~~~~~~~~~~~i~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~-------- 246 (507)
+.++.|+.+| +++++.. .....+.. +...|..+...|+-+.|++- .|+.+.++++........
T Consensus 8 ~~L~vGt~~G-l~~~~~~~~~~~~~i~-----~~~~I~ql~vl~~~~~llvL--sd~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSDPSKPTRIL-----KLSSITQLSVLPELNLLLVL--SDGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred CEEEEEECCC-EEEEEecCCccceeEe-----ecceEEEEEEecccCEEEEE--cCCccEEEEchhhccccccccccccc
Confidence 3466666666 9999983 33333333 33459999999988888776 569999999876543331
Q ss_pred ------EeecCccEEEEE----ee-CCEEEEEecCCeEEEEECCCCCc---CceeeecCCCceEEEEEcCCCCEEEEEeC
Q psy8285 247 ------LRTHMHQVIAMC----WN-GNLLSCGTIGGNILHYDVRTHSD---YPTAITREGDVVCGLKWSPNGRYLASGSN 312 (507)
Q Consensus 247 ------~~~~~~~v~~~~----~~-~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~d 312 (507)
.......+..++ .. ...|+++. ...|.+|....... ....-......+..++|. ++.++.|..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeC
Confidence 111233445555 13 34454444 55888888776321 111222345678889998 567888877
Q ss_pred CcEEEEEcCCCCCCCCeeeecC----------CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee--eeecC
Q psy8285 313 NTVKIWDFRQLDAKRPQVNNQC----------HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC--HVKTD 380 (507)
Q Consensus 313 ~~i~i~d~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~~ 380 (507)
....+.|+.++.. ..+..... ...++..+... ++ .++.+. +..-.+.|. .|++.+ .+.=.
T Consensus 157 ~~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-e~Ll~~----~~~g~fv~~-~G~~~r~~~i~W~ 228 (275)
T PF00780_consen 157 KGFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQLS-DN-EFLLCY----DNIGVFVNK-NGEPSRKSTIQWS 228 (275)
T ss_pred CceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEeC-Cc-eEEEEe----cceEEEEcC-CCCcCcccEEEcC
Confidence 7789999986522 11111111 11233333433 34 344432 444444454 454433 33333
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH 423 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~ 423 (507)
..+.++++. ..||++. . ++.|.||++.+++.++.+...
T Consensus 229 ~~p~~~~~~--~pyli~~--~-~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 229 SAPQSVAYS--SPYLIAF--S-SNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred CchhEEEEE--CCEEEEE--C-CCEEEEEECcCCcEEEEEECC
Confidence 456666663 4678773 3 466999999999998888743
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.001 Score=61.48 Aligned_cols=213 Identities=14% Similarity=0.129 Sum_probs=123.2
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEcc-------CCCeEEEEeC--------CC-CcEEEEeCCCc----eeE
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKP-------RTTDLAVTNT--------CT-EYIDLWHEQEE----RLI 244 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~--------~d-g~i~iwd~~~~----~~~ 244 (507)
..|++.|..+.+....+.++ ....+.+++... ...++++|.+ .. |.|.++++... ..+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~--~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELE--PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL 79 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEE--TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE
T ss_pred cEEEEEeCCCCeEEEEEECC--CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE
Confidence 46889999888887777776 455566554432 2467777632 12 89999999884 222
Q ss_pred EEE--eecCccEEEEEeeCCEEEEEecCCeEEEEECCCCC-cCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEc
Q psy8285 245 QKL--RTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHS-DYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDF 320 (507)
Q Consensus 245 ~~~--~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~ 320 (507)
..+ ....++|++++.-+..|+++. .+.|.+|++...+ ............+.++... +++++.|. ...+.++..
T Consensus 80 ~~i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 80 KLIHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 222 246788999988444455554 5899999998876 2222233233456666554 55888888 488888766
Q ss_pred CCCCCCCCeeeec--CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC-------CC----eeeeeecCCCeEEE-
Q psy8285 321 RQLDAKRPQVNNQ--CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-------GK----EKCHVKTDSQVTSI- 386 (507)
Q Consensus 321 ~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-------~~----~~~~~~~~~~i~~~- 386 (507)
+... ..+..+. .....++++.+-+++..++++.. +|.+.++.... +. ....+..+..++++
T Consensus 157 ~~~~--~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~---~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~ 231 (321)
T PF03178_consen 157 DEEN--NKLILVARDYQPRWVTAAEFLVDEDTIIVGDK---DGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFR 231 (321)
T ss_dssp ETTT--E-EEEEEEESS-BEEEEEEEE-SSSEEEEEET---TSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEE
T ss_pred EccC--CEEEEEEecCCCccEEEEEEecCCcEEEEEcC---CCeEEEEEECCCCcccccccccceeEEEEECCCccceEE
Confidence 5421 2222222 23456888989877655555443 89999987652 12 22333444667777
Q ss_pred --EECCC--CC------eEEEEeccCCCeEEEE
Q psy8285 387 --LWSEQ--YR------ELVTSHGKQDCSLKMW 409 (507)
Q Consensus 387 --~~s~~--~~------~l~~~~g~~d~~i~v~ 409 (507)
++.|. +. .++. ++.+|.|.+.
T Consensus 232 ~~~l~~~~~~~~~~~~~~i~~--~T~~G~Ig~l 262 (321)
T PF03178_consen 232 RGSLIPRSGSSESPNRPQILY--GTVDGSIGVL 262 (321)
T ss_dssp E--SS--SSSS-TTEEEEEEE--EETTS-EEEE
T ss_pred EEEeeecCCCCcccccceEEE--EecCCEEEEE
Confidence 55552 22 2555 5678888743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00032 Score=65.63 Aligned_cols=237 Identities=17% Similarity=0.200 Sum_probs=132.2
Q ss_pred ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce-------------------------------------------eEEE
Q psy8285 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER-------------------------------------------LIQK 246 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~-------------------------------------------~~~~ 246 (507)
.|+.+.|+++...|+++ ...|.|.||.....+ +...
T Consensus 3 ~v~~vs~a~~t~Elav~-~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVG-LESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEE-ETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEE-ccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 47889999998888888 888998888543211 1112
Q ss_pred EeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCce-eeec------CCCceEEEEEcC-----CC---CEEEEE
Q psy8285 247 LRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPT-AITR------EGDVVCGLKWSP-----NG---RYLASG 310 (507)
Q Consensus 247 ~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~------~~~~v~~~~~~~-----~~---~~l~~~ 310 (507)
+....++|++++. |=.+++.|..+|.+.|.|++....... .+.. ....++++.|.- |+ -.+++|
T Consensus 82 ~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp E---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2234677888888 778999999999999999987642211 1111 234677888863 33 357777
Q ss_pred eC-CcEEEEEcCCCCCCC----CeeeecCCCCCeeEEE-EccC--------------------CCcEEEEEccCCCCeEE
Q psy8285 311 SN-NTVKIWDFRQLDAKR----PQVNNQCHLSAVKAIA-WCPW--------------------EPTLLATGGGICDQTVR 364 (507)
Q Consensus 311 ~d-~~i~i~d~~~~~~~~----~~~~~~~~~~~v~~~~-~~~~--------------------~~~~~~~~~~~~d~~i~ 364 (507)
.+ |.+.+|.+.-..... .......+.+++..+. ++.+ -+.++++++ +..++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS---e~~ir 238 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS---ESDIR 238 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE----SSEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc---ccceE
Confidence 76 999999875210001 1111123556665555 3221 012555555 89999
Q ss_pred EEeCCCCCeeeeeecC-CCeEEEEEC-----CCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccc----cceeEEEECC
Q psy8285 365 LWNSMNGKEKCHVKTD-SQVTSILWS-----EQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQ----ERILSAVLSP 434 (507)
Q Consensus 365 i~d~~~~~~~~~~~~~-~~i~~~~~s-----~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~----~~i~~~~~s~ 434 (507)
++...+.+..+..... .....+.+- ..+..|++ -..+|.|++|.+...+.+..++-+. ..+....+++
T Consensus 239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~--l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~ 316 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVC--LFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR 316 (395)
T ss_dssp EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEE--EETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred EEeCCCCcccceeeccccccceEEEEeecccCCceEEEE--EECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence 9999888876655422 123334442 24555666 5679999999999999988776532 3456678899
Q ss_pred CCCEEEEEeCCCcEEEEec
Q psy8285 435 DQTCVAAASADETISIWNC 453 (507)
Q Consensus 435 ~~~~l~s~~~dg~i~iw~~ 453 (507)
+|..++-.+.. .+.++.+
T Consensus 317 ~Gdi~~~~gps-E~~l~sv 334 (395)
T PF08596_consen 317 NGDIFYWTGPS-EIQLFSV 334 (395)
T ss_dssp TS-EEEE-SSS-EEEEEEE
T ss_pred CCCEEEEeCcc-cEEEEEE
Confidence 99977666543 3444444
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00026 Score=69.20 Aligned_cols=202 Identities=11% Similarity=0.074 Sum_probs=131.6
Q ss_pred cEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCc-eEEEEEcCCCCEEEEEe-C-C----cEEEEEcCCCCC
Q psy8285 253 QVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDV-VCGLKWSPNGRYLASGS-N-N----TVKIWDFRQLDA 325 (507)
Q Consensus 253 ~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~-d-~----~i~i~d~~~~~~ 325 (507)
.+.+++-++..++.|+.+|.|.+++-.- .....+..+... |..+....+..+|++.+ | + .+++||++..+.
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~--~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSF--QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccc--eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 6777777889999999999998887543 223455555555 44443334445677665 4 4 699999986522
Q ss_pred ---CCCe--eeecC-----CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC-----CCeeeeeecCCCeEEEEECC
Q psy8285 326 ---KRPQ--VNNQC-----HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-----GKEKCHVKTDSQVTSILWSE 390 (507)
Q Consensus 326 ---~~~~--~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~i~~~~~s~ 390 (507)
+.++ ..... ...++.+++.+.+- ..+++|-. +|.|..+.-.- .+......+..+|+.+.+..
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~--nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFT--NGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEec--CcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 2233 11222 34578889998874 56666655 99999885321 12223334457999999999
Q ss_pred CCCeEEEEeccCCCeEEEEeCCCccE-EEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccce
Q psy8285 391 QYRELVTSHGKQDCSLKMWEYPRLHL-IEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKA 462 (507)
Q Consensus 391 ~~~~l~~~~g~~d~~i~v~d~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 462 (507)
+++.++. ......|.+|.+....+ ...+..|...+++-.+++....+++++. ..+.+|+.....+....
T Consensus 182 d~~s~lF--v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 182 DGKSVLF--VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAF 251 (933)
T ss_pred CCceeEE--EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeee
Confidence 9988322 12356899999885443 4447778888999999886664555554 36899998765544443
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0043 Score=58.51 Aligned_cols=220 Identities=14% Similarity=0.130 Sum_probs=150.4
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEec---CCeEEEEECCCCCc
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTI---GGNILHYDVRTHSD 283 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~---dg~i~i~d~~~~~~ 283 (507)
..-..++.++.+..+++....++.|.+.|..+.+......... ....+.+ +++.+..+.. ++.+.+.|..+...
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 3456788889998777763557899999988777766655332 3334444 6766666555 68888888887763
Q ss_pred CceeeecCCCceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCee-e---ecCCCCCeeEEEEccCCCcEEEEEcc
Q psy8285 284 YPTAITREGDVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQV-N---NQCHLSAVKAIAWCPWEPTLLATGGG 357 (507)
Q Consensus 284 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~-~---~~~~~~~v~~~~~~~~~~~~~~~~~~ 357 (507)
... ......+ ..++++|+|+.++... ++.|.+.|.... .... . ...-......+.++|++.++.+....
T Consensus 153 ~~~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~---~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 153 TAT-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN---SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EEE-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCc---ceeccccccccccCCCCceEEECCCCCEEEEEecc
Confidence 333 3333334 7899999999888777 499999997764 2221 0 11223345689999999888887765
Q ss_pred CCCCeEEEEeCCCCCeeee-eecCC-CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecccc---ceeEEEE
Q psy8285 358 ICDQTVRLWNSMNGKEKCH-VKTDS-QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQE---RILSAVL 432 (507)
Q Consensus 358 ~~d~~i~i~d~~~~~~~~~-~~~~~-~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~---~i~~~~~ 432 (507)
+.++.+...|..++..... ..... ....+..+|+|+.+.+. -...+.+.+.|..+............ .+..+++
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~-~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~ 306 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVA-NSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAI 306 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEE-ecCCCeEEEEeCCCCceeeeecccccccccceeccc
Confidence 3347999999988876665 22223 56788999999999985 24468999999988877776654332 3445555
Q ss_pred CCC
Q psy8285 433 SPD 435 (507)
Q Consensus 433 s~~ 435 (507)
.+.
T Consensus 307 ~~~ 309 (381)
T COG3391 307 SPL 309 (381)
T ss_pred eee
Confidence 543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00043 Score=65.67 Aligned_cols=223 Identities=12% Similarity=0.082 Sum_probs=121.9
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCc
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYP 285 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~ 285 (507)
.......+.++|+|+.++++ .+|...|+.....+.... +.-..+.| ..+.+|+-...+.|.++.--+.+ ..
T Consensus 31 ~~~~p~~ls~npngr~v~V~--g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~-~~ 102 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVC--GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNE-VV 102 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEE--ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE--TT
T ss_pred CCcCCeeEEECCCCCEEEEE--cCCEEEEEEccCCccccc-----CceeEEEEecCccEEEEECCCeEEEEEcCccc-cc
Confidence 34557899999999999986 788899988554443322 22345666 45667788778889996322222 11
Q ss_pred eeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEE
Q psy8285 286 TAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRL 365 (507)
Q Consensus 286 ~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i 365 (507)
..+.. ...+..+-. |.+|...+++.|.+||+.++ +.+..+.. .+|..+.|++++..++..+ +..+.+
T Consensus 103 k~i~~-~~~~~~If~---G~LL~~~~~~~i~~yDw~~~---~~i~~i~v--~~vk~V~Ws~~g~~val~t----~~~i~i 169 (443)
T PF04053_consen 103 KSIKL-PFSVEKIFG---GNLLGVKSSDFICFYDWETG---KLIRRIDV--SAVKYVIWSDDGELVALVT----KDSIYI 169 (443)
T ss_dssp ------SS-EEEEE----SSSEEEEETTEEEEE-TTT-----EEEEESS---E-EEEEE-TTSSEEEEE-----S-SEEE
T ss_pred eEEcC-CcccceEEc---CcEEEEECCCCEEEEEhhHc---ceeeEEec--CCCcEEEEECCCCEEEEEe----CCeEEE
Confidence 12221 112333322 88888888789999999987 77777752 3489999999986555544 567777
Q ss_pred EeCCCC-----------Ceeeeeec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEEC
Q psy8285 366 WNSMNG-----------KEKCHVKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLS 433 (507)
Q Consensus 366 ~d~~~~-----------~~~~~~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s 433 (507)
++.... .....+.. ...|.+.+|..+ .++.+ + .+.|+- +..|+. ..+..-..++.=+.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYt--T-~~~lkY--l~~Ge~-~~i~~ld~~~yllgy~ 241 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYT--T-SNHLKY--LVNGET-GIIAHLDKPLYLLGYL 241 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE----TTEEEE--EETTEE-EEEEE-SS--EEEEEE
T ss_pred EEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEE--c-CCeEEE--EEcCCc-ceEEEcCCceEEEEEE
Confidence 764433 02333333 567888999876 44442 2 225555 333332 2233224566777788
Q ss_pred CCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 434 PDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 434 ~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
+..+.+.....|+.|..+.+.....
T Consensus 242 ~~~~~ly~~Dr~~~v~~~~ld~~~~ 266 (443)
T PF04053_consen 242 PKENRLYLIDRDGNVISYELDLSEL 266 (443)
T ss_dssp TTTTEEEEE-TT--EEEEE--HHHH
T ss_pred ccCCEEEEEECCCCEEEEEECHHHH
Confidence 8778899999999999998875443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0024 Score=53.74 Aligned_cols=99 Identities=7% Similarity=-0.055 Sum_probs=63.0
Q ss_pred CEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceE-EEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEE
Q psy8285 177 DTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYIS-CVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVI 255 (507)
Q Consensus 177 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 255 (507)
-++.++..|.+++.+.++|+....+...+ .|. .....+++..+..+ +.|++.+..|..+..++...+.......
T Consensus 65 fVV~GCy~g~lYfl~~~tGs~~w~f~~~~----~vk~~a~~d~~~glIycg-shd~~~yalD~~~~~cVykskcgG~~f~ 139 (354)
T KOG4649|consen 65 FVVLGCYSGGLYFLCVKTGSQIWNFVILE----TVKVRAQCDFDGGLIYCG-SHDGNFYALDPKTYGCVYKSKCGGGTFV 139 (354)
T ss_pred EEEEEEccCcEEEEEecchhheeeeeehh----hhccceEEcCCCceEEEe-cCCCcEEEecccccceEEecccCCceec
Confidence 36777899999999999997665555432 222 23345678888888 9999999999999888777553322222
Q ss_pred --EEEeeCCEEEEEecCCeEEEEECCC
Q psy8285 256 --AMCWNGNLLSCGTIGGNILHYDVRT 280 (507)
Q Consensus 256 --~~~~~~~~l~~~~~dg~i~i~d~~~ 280 (507)
+++.-...|..+...|.+.--..+.
T Consensus 140 sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 140 SPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred cceecCCCceEEEEeccceEEEEccCC
Confidence 2333233344444455554444433
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0015 Score=63.92 Aligned_cols=234 Identities=10% Similarity=0.022 Sum_probs=135.1
Q ss_pred CCEEEEEcCCeEEEEECCCCceeEEEecCCCCC---Cce-EEEEEccCCCeEEEEe--------CCCCcEEEEeCCCcee
Q psy8285 176 HDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDN---AYI-SCVAWKPRTTDLAVTN--------TCTEYIDLWHEQEERL 243 (507)
Q Consensus 176 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~---~~v-~~~~~~~~~~~l~~~~--------~~dg~i~iwd~~~~~~ 243 (507)
+.+++++.++.|+-+|.++|+..-...... +. ..+ ....+. +..++++. ..+|.+..+|..+++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~-~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNND-QVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCC-CcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 347777789999999999999877766543 21 001 111222 24455541 1367899999999998
Q ss_pred EEEEeecCc--------------------cEE-EEEe--eCCEEEEEecCC------------------eEEEEECCCCC
Q psy8285 244 IQKLRTHMH--------------------QVI-AMCW--NGNLLSCGTIGG------------------NILHYDVRTHS 282 (507)
Q Consensus 244 ~~~~~~~~~--------------------~v~-~~~~--~~~~l~~~~~dg------------------~i~i~d~~~~~ 282 (507)
+........ .+. .... .+..++.++.++ .|.-+|.++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 877654211 011 1233 356777776665 68888998887
Q ss_pred cCceeeecCC-C----ceEEEEEc----CCCC---EEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCC
Q psy8285 283 DYPTAITREG-D----VVCGLKWS----PNGR---YLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEP 349 (507)
Q Consensus 283 ~~~~~~~~~~-~----~v~~~~~~----~~~~---~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 349 (507)
..-.....+. . ......+. -++. .++.++ +|.+...|.+++ +.+...... ...+..+| +
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG---~~~W~~~~~---~~~~~~~~-~- 339 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTG---KLISARPEV---EQPMAYDP-G- 339 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCC---cEeeEeEee---ccccccCC-c-
Confidence 3322211111 0 00000111 1333 455565 699999999998 554443211 11233334 2
Q ss_pred cEEEEEc---------------cCCCCeEEEEeCCCCCeeeeeecC---------CCeEEEEECCCCCeEEEEeccCCCe
Q psy8285 350 TLLATGG---------------GICDQTVRLWNSMNGKEKCHVKTD---------SQVTSILWSEQYRELVTSHGKQDCS 405 (507)
Q Consensus 350 ~~~~~~~---------------~~~d~~i~i~d~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~~~~g~~d~~ 405 (507)
.+++... ...++.+.-.|+.+|+.+...... .....-...-.+..|++ ++.||.
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~--g~~dG~ 417 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA--GAADGY 417 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE--ECCCCe
Confidence 3333110 113678999999999987766544 11111011124567777 778999
Q ss_pred EEEEeCCCccEEEEeec
Q psy8285 406 LKMWEYPRLHLIEELKI 422 (507)
Q Consensus 406 i~v~d~~~~~~~~~~~~ 422 (507)
|+.+|.++++.+.+.+.
T Consensus 418 l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 418 FRAFDATTGKELWKFRT 434 (488)
T ss_pred EEEEECCCCceeeEEEC
Confidence 99999999999988764
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.8e-07 Score=83.14 Aligned_cols=196 Identities=18% Similarity=0.332 Sum_probs=125.3
Q ss_pred cEEEEEe----eCCEEEEEecCCeEEEEECCCCCcC-ceeeecCCCceEEEEEcC-CCCEEEEEe-----CCcEEEEEcC
Q psy8285 253 QVIAMCW----NGNLLSCGTIGGNILHYDVRTHSDY-PTAITREGDVVCGLKWSP-NGRYLASGS-----NNTVKIWDFR 321 (507)
Q Consensus 253 ~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~-----d~~i~i~d~~ 321 (507)
.+.|+++ +...+++|..+|.|.+-..+..... .....++....++++|++ |.++||+|- |..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 3455555 3457889999999999888765432 445667788899999998 567777775 3689999998
Q ss_pred CCCC-CCCeeeec-CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe-eeeeecCCCeEEEEECC-CCCeEEE
Q psy8285 322 QLDA-KRPQVNNQ-CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE-KCHVKTDSQVTSILWSE-QYRELVT 397 (507)
Q Consensus 322 ~~~~-~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~i~~~~~s~-~~~~l~~ 397 (507)
+.-. ++....+. +......+++|..+. .++.+|.. .+.+.++|++.... ...+. ...+..+..+| ...|++.
T Consensus 138 s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~--sr~~~ifdlRqs~~~~~svn-Tk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMT--SRSVHIFDLRQSLDSVSSVN-TKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccCCCccccccccccccCccccccccCc-chhhcccc--cchhhhhhhhhhhhhhhhhh-hhhcccceecCCCCCceec
Confidence 7511 11111122 134456688888666 45555543 78999999974321 11111 12456677788 6778876
Q ss_pred EeccCCCeEEEEe-CCCc-cEEEEeeccc----cceeEEEECCCCC-EEEEEeC-CCcEEEEecCC
Q psy8285 398 SHGKQDCSLKMWE-YPRL-HLIEELKIHQ----ERILSAVLSPDQT-CVAAASA-DETISIWNCFP 455 (507)
Q Consensus 398 ~~g~~d~~i~v~d-~~~~-~~~~~~~~~~----~~i~~~~~s~~~~-~l~s~~~-dg~i~iw~~~~ 455 (507)
..||.|.+|| .++- .++..+.... ..+..++|.|... ++++.+. .++|+.+++..
T Consensus 214 ---~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 ---NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ---cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 3499999999 3332 2222222222 2489999999532 4555554 47899999863
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00083 Score=64.39 Aligned_cols=276 Identities=12% Similarity=0.098 Sum_probs=152.8
Q ss_pred ccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 165 DFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 165 ~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
....+|++-+.+.+..+++-|.+++|+-..++.. ..+..+ ..+.+..+..+++..++|++ +..|.|.++.++....-
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~-~~~~~~~~~vs~~e~lvAag-t~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEG-ATGITCVRSVSSVEYLVAAG-TASGRVSVFQLNKELPR 111 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhh-cccccC-ccceEEEEEecchhHhhhhh-cCCceEEeehhhccCCC
Confidence 3456677766666777789999999998776654 344444 45566777788877777776 99999999988764321
Q ss_pred EE-----E-eecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCC---cCceeeecCCCceEEEEEcCCCCEEEEEeCC
Q psy8285 245 QK-----L-RTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHS---DYPTAITREGDVVCGLKWSPNGRYLASGSNN 313 (507)
Q Consensus 245 ~~-----~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~ 313 (507)
.. . ..|...|++++| |+..+++|...|+|..-.++... .....+......|-.+.+.. +.+|++..-
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q-~~LLVStl~- 189 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ-SYLLVSTLT- 189 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc-ceehHhhhh-
Confidence 11 1 237889999999 79999999999999988887621 12233344556676666652 333333222
Q ss_pred cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccC----CCcEEEEEccCCCCeEEEEeCC-CCCeeeeeecC--------
Q psy8285 314 TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW----EPTLLATGGGICDQTVRLWNSM-NGKEKCHVKTD-------- 380 (507)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~-------- 380 (507)
.-.+++.+.... +.+-.-....-.-...+|-|. .+-.++++ ---.|+|..+ .|+.+++....
T Consensus 190 r~~Lc~tE~eti-~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca----RPG~RlWead~~G~V~~Thqfk~ala~~p~ 264 (726)
T KOG3621|consen 190 RCILCQTEAETI-TQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA----RPGLRLWEADFAGEVIKTHQFKDALARPPA 264 (726)
T ss_pred hhheeecchhHH-HHhcCCCcCCccccceEEeeccccCCCceEEEe----cCCCceEEeecceeEEEeeehhhhhccCCC
Confidence 233445544311 111111101111233444443 22233333 3345677654 23333222110
Q ss_pred ----------------------CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCE
Q psy8285 381 ----------------------SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC 438 (507)
Q Consensus 381 ----------------------~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 438 (507)
-....+.+-.++..|+. + +-.|+|+|..+.+.+.-.. ....|.+++- .++-
T Consensus 265 p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~---t-e~Giyv~d~~~~~v~l~se-~~~DI~dVs~--~~ne 337 (726)
T KOG3621|consen 265 PEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAW---T-EVGIYVFDSNNSQVYLWSE-GGHDILDVSH--CGNE 337 (726)
T ss_pred CcccCCCcCCccccCCCCCccccccceeEEeecceEEEe---e-cceEEEEEeccceEEEeec-CCCceeEEee--cCce
Confidence 01111222222223333 2 3338888877655443322 2344655544 5556
Q ss_pred EEEEeCCCcEEEEecCCCC
Q psy8285 439 VAAASADETISIWNCFPRD 457 (507)
Q Consensus 439 l~s~~~dg~i~iw~~~~~~ 457 (507)
|+.-..|+.+++..+.+..
T Consensus 338 iFvL~~d~~l~~~sv~s~q 356 (726)
T KOG3621|consen 338 IFVLNLDRGLKVESVASRQ 356 (726)
T ss_pred EEEEecCCceeEEEeehhH
Confidence 6666777777777776543
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00012 Score=68.78 Aligned_cols=92 Identities=21% Similarity=0.250 Sum_probs=67.3
Q ss_pred EEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCe
Q psy8285 315 VKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRE 394 (507)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~ 394 (507)
-.+|++...+......+-......+.+.+++|+...++..+. ||.|.+||...+.... .+..-.++.++|+|+|..
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~---DgSiiLyD~~~~~t~~-~ka~~~P~~iaWHp~gai 313 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCE---DGSIILYDTTRGVTLL-AKAEFIPTLIAWHPDGAI 313 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEec---CCeEEEEEcCCCeeee-eeecccceEEEEcCCCcE
Confidence 356666543211111222246778999999999977777665 9999999987664332 244456889999999999
Q ss_pred EEEEeccCCCeEEEEeCC
Q psy8285 395 LVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 395 l~~~~g~~d~~i~v~d~~ 412 (507)
+++ |++.|.+.+||+.
T Consensus 314 ~~V--~s~qGelQ~FD~A 329 (545)
T PF11768_consen 314 FVV--GSEQGELQCFDMA 329 (545)
T ss_pred EEE--EcCCceEEEEEee
Confidence 999 8899999999985
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0016 Score=60.93 Aligned_cols=184 Identities=11% Similarity=0.090 Sum_probs=102.5
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe--e------cCccEEEEEe-------eC---CEEEEEe
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR--T------HMHQVIAMCW-------NG---NLLSCGT 268 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~--~------~~~~v~~~~~-------~~---~~l~~~~ 268 (507)
..++|++++.|.-| +++++ ..+|.+.|.|++....+..-. . ....++++.| |+ -.+++|+
T Consensus 85 ~~g~vtal~~S~iG-Fvaig-y~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 85 KQGPVTALKNSDIG-FVAIG-YESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp -S-SEEEEEE-BTS-EEEEE-ETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred cCCcEeEEecCCCc-EEEEE-ecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 46789999998554 88888 999999999998777665532 1 2345778888 22 3788999
Q ss_pred cCCeEEEEECCC-C-Cc----CceeeecCCCceEEEE-EcCC---------------------CCEEEEEeCCcEEEEEc
Q psy8285 269 IGGNILHYDVRT-H-SD----YPTAITREGDVVCGLK-WSPN---------------------GRYLASGSNNTVKIWDF 320 (507)
Q Consensus 269 ~dg~i~i~d~~~-~-~~----~~~~~~~~~~~v~~~~-~~~~---------------------~~~l~~~~d~~i~i~d~ 320 (507)
..|.+.+|.+.- . .. .......+.+.|..+. ++.+ ..+++++++..++++..
T Consensus 163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~ 242 (395)
T PF08596_consen 163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP 242 (395)
T ss_dssp TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence 999999998752 1 10 0111124556665554 3222 12677777899999988
Q ss_pred CCCCCCCCeeeecCCCCCeeEEEEc-----cCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC-----CeEEEEECC
Q psy8285 321 RQLDAKRPQVNNQCHLSAVKAIAWC-----PWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS-----QVTSILWSE 390 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----~i~~~~~s~ 390 (507)
.+. +..............+.+- ..+..|++... +|.+++|.+..-+.+..+.... .+....+++
T Consensus 243 ~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~---~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~ 316 (395)
T PF08596_consen 243 PKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN---NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR 316 (395)
T ss_dssp T------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET---TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred CCC---cccceeeccccccceEEEEeecccCCceEEEEEEC---CCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence 765 4444333222233344442 23323444443 9999999999998888776542 244566788
Q ss_pred CCCeEEEE
Q psy8285 391 QYRELVTS 398 (507)
Q Consensus 391 ~~~~l~~~ 398 (507)
+|..++..
T Consensus 317 ~Gdi~~~~ 324 (395)
T PF08596_consen 317 NGDIFYWT 324 (395)
T ss_dssp TS-EEEE-
T ss_pred CCCEEEEe
Confidence 88877663
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.015 Score=57.18 Aligned_cols=277 Identities=13% Similarity=0.064 Sum_probs=153.6
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceE----------EEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYIS----------CVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~----------~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~ 247 (507)
+++++.++.|+-+|..+|+..-...... . ..+. .+++. +..++++ +.++.+.-+|..+|+.+...
T Consensus 72 vyv~s~~g~v~AlDa~TGk~lW~~~~~~-~-~~~~~~~~~~~~~rg~av~--~~~v~v~-t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 72 MYVTTSYSRVYALDAKTGKELWKYDPKL-P-DDVIPVMCCDVVNRGVALY--DGKVFFG-TLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred EEEECCCCcEEEEECCCCceeeEecCCC-C-cccccccccccccccceEE--CCEEEEE-cCCCEEEEEECCCCCEEeec
Confidence 5566678899999999998776655432 1 1111 11222 3466777 78999999999999988765
Q ss_pred eec--C--ccEEE-EEeeCCEEEEEec------CCeEEEEECCCCCcCceeeec--C-----------------------
Q psy8285 248 RTH--M--HQVIA-MCWNGNLLSCGTI------GGNILHYDVRTHSDYPTAITR--E----------------------- 291 (507)
Q Consensus 248 ~~~--~--~~v~~-~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~--~----------------------- 291 (507)
... . ..+.+ ....+..++.+.. +|.|..+|.++++..-..... .
T Consensus 147 ~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred ccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 431 1 11111 1112334555432 688999999887632111100 0
Q ss_pred -----CCce-EEEEEcCCCCEEEEEe-C-----C-----------cEEEEEcCCCCCCCCeeeecCCCC---------Ce
Q psy8285 292 -----GDVV-CGLKWSPNGRYLASGS-N-----N-----------TVKIWDFRQLDAKRPQVNNQCHLS---------AV 339 (507)
Q Consensus 292 -----~~~v-~~~~~~~~~~~l~~~~-d-----~-----------~i~i~d~~~~~~~~~~~~~~~~~~---------~v 339 (507)
...+ ..+++.|...+++.+. + + .|.-.|++++ +..-.++.... ..
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG---~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTG---KIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccC---CEEEeeeCCCCCCccccCCCCc
Confidence 0011 1335666555555543 1 1 4555566666 33333322111 11
Q ss_pred eEEEEccCCC--cEEEEEccCCCCeEEEEeCCCCCeeee--------eec----CC------------------------
Q psy8285 340 KAIAWCPWEP--TLLATGGGICDQTVRLWNSMNGKEKCH--------VKT----DS------------------------ 381 (507)
Q Consensus 340 ~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~--------~~~----~~------------------------ 381 (507)
.-+....+|+ .+++.+.. +|.+++.|-++|+.+.. +.. ..
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K--~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~P 381 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADR--NGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCP 381 (527)
T ss_pred EEEEeccCCcEEEEEEEeCC--CceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECC
Confidence 1122223554 46666654 99999999999987521 100 00
Q ss_pred ------CeEEEEECCCCCeEEEEecc-------------------------------CCCeEEEEeCCCccEEEEeeccc
Q psy8285 382 ------QVTSILWSEQYRELVTSHGK-------------------------------QDCSLKMWEYPRLHLIEELKIHQ 424 (507)
Q Consensus 382 ------~i~~~~~s~~~~~l~~~~g~-------------------------------~d~~i~v~d~~~~~~~~~~~~~~ 424 (507)
.-..++++|+..++++-... .-|.|.-+|+.+++.+...+...
T Consensus 382 g~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~ 461 (527)
T TIGR03075 382 GFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDF 461 (527)
T ss_pred CCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCC
Confidence 00125667766666552111 12457778888887777665322
Q ss_pred cceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeec
Q psy8285 425 ERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQV 465 (507)
Q Consensus 425 ~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 465 (507)
....+. ..-.+..++.++.||.++.+|..+++++-+.+..
T Consensus 462 p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 462 PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 111111 1124557777888999999999999998876543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0054 Score=51.72 Aligned_cols=146 Identities=13% Similarity=0.057 Sum_probs=93.8
Q ss_pred ccCCC-eEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCc
Q psy8285 217 KPRTT-DLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDV 294 (507)
Q Consensus 217 ~~~~~-~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 294 (507)
.++.+ +++.+ +..+.+.--|..+|+.+..-. -..++.+-+. -|++++.|...|.+++.+.++++... .+.....-
T Consensus 19 ~~dskT~v~ig-SHs~~~~avd~~sG~~~We~i-lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w-~f~~~~~v 95 (354)
T KOG4649|consen 19 CNDSKTLVVIG-SHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIW-NFVILETV 95 (354)
T ss_pred ecCCceEEEEe-cCCceEEEecCCCCcEEeehh-hCceeeeeeEEECCEEEEEEccCcEEEEEecchhhee-eeeehhhh
Confidence 34444 45555 899999999999988765432 2233333333 58889999999999999999986433 33222222
Q ss_pred eEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC
Q psy8285 295 VCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG 371 (507)
Q Consensus 295 v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 371 (507)
-......+++.++..++ |++.+..|.++. .++...+...+...+.+..|-...++++.. .|.+.--.....
T Consensus 96 k~~a~~d~~~glIycgshd~~~yalD~~~~---~cVykskcgG~~f~sP~i~~g~~sly~a~t---~G~vlavt~~~~ 167 (354)
T KOG4649|consen 96 KVRAQCDFDGGLIYCGSHDGNFYALDPKTY---GCVYKSKCGGGTFVSPVIAPGDGSLYAAIT---AGAVLAVTKNPY 167 (354)
T ss_pred ccceEEcCCCceEEEecCCCcEEEeccccc---ceEEecccCCceeccceecCCCceEEEEec---cceEEEEccCCC
Confidence 22345677899999999 799999999986 666665544444455666663335555444 455544444433
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.008 Score=54.20 Aligned_cols=224 Identities=12% Similarity=0.088 Sum_probs=127.0
Q ss_pred cCCCeEEEEeCCCCcEEEEeCCC-ceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCcee-------
Q psy8285 218 PRTTDLAVTNTCTEYIDLWHEQE-ERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTA------- 287 (507)
Q Consensus 218 ~~~~~l~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~------- 287 (507)
..++.|++| +.+| +.+++... .+...... ...|..+.. +-+.|++-+ |+.++++++.........
T Consensus 5 ~~~~~L~vG-t~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVG-TEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEE-ECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence 356788888 8888 99999833 23322222 223777777 334444444 599999998865422210
Q ss_pred ------eecCCCceEEEE---EcCCCCEEEEEeCCcEEEEEcCCCC-CC-CCeeeecCCCCCeeEEEEccCCCcEEEEEc
Q psy8285 288 ------ITREGDVVCGLK---WSPNGRYLASGSNNTVKIWDFRQLD-AK-RPQVNNQCHLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 288 ------~~~~~~~v~~~~---~~~~~~~l~~~~d~~i~i~d~~~~~-~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
.......+..++ -......|+++....|.+|...... .. ...+.+. -...+..++|.+ ..++.+.
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~---~~i~v~~ 155 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG---NKICVGT 155 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC---CEEEEEe
Confidence 111222344343 1223455666667899999887642 22 3444444 457888999984 3444444
Q ss_pred cCCCCeEEEEeCCCCCeeeeeecC-------------CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEE--Eee
Q psy8285 357 GICDQTVRLWNSMNGKEKCHVKTD-------------SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIE--ELK 421 (507)
Q Consensus 357 ~~~d~~i~i~d~~~~~~~~~~~~~-------------~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~--~~~ 421 (507)
.+...+.|+.++.....+... .++..+.. +++.+|++ . +..-.+.| ..|++.. .+.
T Consensus 156 ---~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~--~--~~~g~fv~-~~G~~~r~~~i~ 226 (275)
T PF00780_consen 156 ---SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC--Y--DNIGVFVN-KNGEPSRKSTIQ 226 (275)
T ss_pred ---CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE--e--cceEEEEc-CCCCcCcccEEE
Confidence 567889999877654443211 12333333 34566665 2 33333334 3444332 111
Q ss_pred ccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccccee
Q psy8285 422 IHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 422 ~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 463 (507)
=.....++++ ...+|+..+.+ .|.||++.+++..+.+.
T Consensus 227 -W~~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 227 -WSSAPQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIP 264 (275)
T ss_pred -cCCchhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEE
Confidence 1223445555 34577776665 59999999998776654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0038 Score=57.68 Aligned_cols=211 Identities=16% Similarity=0.191 Sum_probs=119.9
Q ss_pred CcEEEEeCCCceeEEEEee-cCccEEEEEe---e------CCEEEEEec----------CCeEEEEECCCC-----CcCc
Q psy8285 231 EYIDLWHEQEERLIQKLRT-HMHQVIAMCW---N------GNLLSCGTI----------GGNILHYDVRTH-----SDYP 285 (507)
Q Consensus 231 g~i~iwd~~~~~~~~~~~~-~~~~v~~~~~---~------~~~l~~~~~----------dg~i~i~d~~~~-----~~~~ 285 (507)
..|++.|..+.+.+..+.- ....+.+++. . ..+|+.|+. .|.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3588889888877766553 3334454444 2 357777753 288999999884 1111
Q ss_pred eeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCC--CCCeeEEEEccCCCcEEEEEccCCCCeE
Q psy8285 286 TAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCH--LSAVKAIAWCPWEPTLLATGGGICDQTV 363 (507)
Q Consensus 286 ~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~d~~i 363 (507)
.......++|++++-- ++ .|+++..+.|.+|++... +.+.....+ ...+.++... ++.+++ +.. ...+
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~---~~l~~~~~~~~~~~i~sl~~~--~~~I~v-gD~--~~sv 151 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNS---KTLLKKAFYDSPFYITSLSVF--KNYILV-GDA--MKSV 151 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEETTEEEEEEEETT---SSEEEEEEE-BSSSEEEEEEE--TTEEEE-EES--SSSE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEeecCEEEEEEccCc---ccchhhheecceEEEEEEecc--ccEEEE-EEc--ccCE
Confidence 2223457889888766 33 477777799999999986 323222222 2355555554 435554 432 5666
Q ss_pred EEEeCCC-CCeeeeeec---CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC-------cc-EEE-Eeecc-ccceeE
Q psy8285 364 RLWNSMN-GKEKCHVKT---DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR-------LH-LIE-ELKIH-QERILS 429 (507)
Q Consensus 364 ~i~d~~~-~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~-------~~-~~~-~~~~~-~~~i~~ 429 (507)
.++..+. .+.+..+.. ...++++.+-+++..+++ +..+|.+.++.... +. .+. ...-| ...|++
T Consensus 152 ~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~--~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~ 229 (321)
T PF03178_consen 152 SLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIV--GDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNS 229 (321)
T ss_dssp EEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEE--EETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEE
T ss_pred EEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEE--EcCCCeEEEEEECCCCcccccccccceeEEEEECCCccce
Confidence 6653332 222333322 246888888867677777 78899999998752 22 222 11112 345776
Q ss_pred E---EECCC--C------CEEEEEeCCCcEEEEec
Q psy8285 430 A---VLSPD--Q------TCVAAASADETISIWNC 453 (507)
Q Consensus 430 ~---~~s~~--~------~~l~s~~~dg~i~iw~~ 453 (507)
+ .+.|. + ..++.++.+|.|...-.
T Consensus 230 ~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~p 264 (321)
T PF03178_consen 230 FRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLIP 264 (321)
T ss_dssp EEE--SS--SSSS-TTEEEEEEEEETTS-EEEEEE
T ss_pred EEEEEeeecCCCCcccccceEEEEecCCEEEEEEe
Confidence 6 55552 2 24888889999884433
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00019 Score=68.53 Aligned_cols=158 Identities=14% Similarity=0.135 Sum_probs=103.8
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEE-Ee--eCCEEEEEecCCeEEEEECCCCCc
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAM-CW--NGNLLSCGTIGGNILHYDVRTHSD 283 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~-~~--~~~~l~~~~~dg~i~i~d~~~~~~ 283 (507)
+...|.--++...+++++.| +..|.+++|+-..++....-.+-...++++ +. +..++|+|+..|.|.++.+.....
T Consensus 32 ~~~~v~lTc~dst~~~l~~G-sS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMG-SSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEe-cccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 44555555667778999999 999999999977765443333223333332 22 678889999999999998887432
Q ss_pred Cceee-----ecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCC-CCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEc
Q psy8285 284 YPTAI-----TREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQ-LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 284 ~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
..... ..|+..|++++|++++..+++|.+ |+|.+-.+.. .........+......|..+.... .+++++..
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl 188 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTL 188 (726)
T ss_pred CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhh
Confidence 21111 236788999999999999999996 9999888876 211123334444566777777753 24555432
Q ss_pred cCCCCeEEEEeCCCC
Q psy8285 357 GICDQTVRLWNSMNG 371 (507)
Q Consensus 357 ~~~d~~i~i~d~~~~ 371 (507)
-...+++++.+
T Consensus 189 ----~r~~Lc~tE~e 199 (726)
T KOG3621|consen 189 ----TRCILCQTEAE 199 (726)
T ss_pred ----hhhheeecchh
Confidence 23445555443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0036 Score=54.01 Aligned_cols=206 Identities=12% Similarity=0.125 Sum_probs=123.9
Q ss_pred EEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee-cCccEEEEEe--eCCE
Q psy8285 187 VYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT-HMHQVIAMCW--NGNL 263 (507)
Q Consensus 187 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~--~~~~ 263 (507)
..+|...-.-........| ....+.++.|+|+.+.|++. .....-.|+=..+|+.+.++.- .-...-.+.+ ++.+
T Consensus 65 ~~~~l~~y~~~i~akpi~g-~~~nvS~LTynp~~rtLFav-~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~f 142 (316)
T COG3204 65 IARYLLEYRARIDAKPILG-ETANVSSLTYNPDTRTLFAV-TNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQF 142 (316)
T ss_pred hhhccCCceEEEecccccc-ccccccceeeCCCcceEEEe-cCCCceEEEEecCCceEEEecccccCChhHeEEecCCEE
Confidence 4455443322222222344 45569999999999999998 6777777777778888887753 2223345677 5566
Q ss_pred EEEEecCCeEEEEECCCCCcCc---------eeeecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeeeec
Q psy8285 264 LSCGTIGGNILHYDVRTHSDYP---------TAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQ 333 (507)
Q Consensus 264 l~~~~~dg~i~i~d~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~ 333 (507)
.++--+++.+.++.+....... ............++|.|..+.|..+-+ .-+.||........-......
T Consensus 143 vi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~ 222 (316)
T COG3204 143 VIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASL 222 (316)
T ss_pred EEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccccc
Confidence 6666677888888776543111 111111456788999999988888885 777777665431111111111
Q ss_pred CC-------CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC----------CCeEEEEECCCCCeEE
Q psy8285 334 CH-------LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD----------SQVTSILWSEQYRELV 396 (507)
Q Consensus 334 ~~-------~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~ 396 (507)
.+ -..+.++.|++....+++-+.+ ++.+.-.|.. |.++..+... .+...++..++|...+
T Consensus 223 ~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~E--Sr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYI 299 (316)
T COG3204 223 DPTADRDLFVLDVSGLEFNAITNSLLVLSDE--SRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYI 299 (316)
T ss_pred CcccccceEeeccccceecCCCCcEEEEecC--CceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEE
Confidence 11 2357788898877788887765 7888777764 4433333211 1234555555555444
Q ss_pred E
Q psy8285 397 T 397 (507)
Q Consensus 397 ~ 397 (507)
+
T Consensus 300 v 300 (316)
T COG3204 300 V 300 (316)
T ss_pred E
Confidence 4
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0071 Score=54.53 Aligned_cols=217 Identities=12% Similarity=0.058 Sum_probs=129.1
Q ss_pred EEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe-e-CCEEEEEecCCeEEEEECCCCCcCceeee-
Q psy8285 213 CVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW-N-GNLLSCGTIGGNILHYDVRTHSDYPTAIT- 289 (507)
Q Consensus 213 ~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 289 (507)
...|.++...|+-+.-..+.|.-|+..+++... +. +...+.++.. + +..|+++.. -+.+++.+++.. ...+.
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~-~t~~~~ 103 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGK-ITLLAE 103 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCce-eEEecc
Confidence 345677777666654677888889887654322 22 2223334433 3 444544432 345556544331 11111
Q ss_pred ---c-CCCceEEEEEcCCCCEEEEEeC------------CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEE
Q psy8285 290 ---R-EGDVVCGLKWSPNGRYLASGSN------------NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLA 353 (507)
Q Consensus 290 ---~-~~~~v~~~~~~~~~~~l~~~~d------------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 353 (507)
+ .....+.+...|+|.+.++... |.++.+|. .+ ........+-..-+.|+||||++.+++
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g---~~~~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DG---GVVRLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CC---CEEEeecCcEEecCceEECCCCCEEEE
Confidence 1 1234567788899887665322 33444443 23 344444444556689999999988888
Q ss_pred EEccCCCCeEEEEeCCC--CC----e-eeeee-cCCCeEEEEECCCCCeEEEEeccCCC-eEEEEeCCCccEEEEeeccc
Q psy8285 354 TGGGICDQTVRLWNSMN--GK----E-KCHVK-TDSQVTSILWSEQYRELVTSHGKQDC-SLKMWEYPRLHLIEELKIHQ 424 (507)
Q Consensus 354 ~~~~~~d~~i~i~d~~~--~~----~-~~~~~-~~~~i~~~~~s~~~~~l~~~~g~~d~-~i~v~d~~~~~~~~~~~~~~ 424 (507)
+-+. .+.|.-|++.. +. . ...+. ..+..-.++...+|.+.++ +..+| .|.+|+.. ++++..+.-+.
T Consensus 180 aDT~--~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~--a~~~g~~v~~~~pd-G~l~~~i~lP~ 254 (307)
T COG3386 180 ADTP--ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVA--AVWGGGRVVRFNPD-GKLLGEIKLPV 254 (307)
T ss_pred EeCC--CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEe--cccCCceEEEECCC-CcEEEEEECCC
Confidence 7663 78888888752 21 1 11111 1245667788888888865 33444 99999987 99999888776
Q ss_pred cceeEEEEC-CCCCEEEEEe
Q psy8285 425 ERILSAVLS-PDQTCVAAAS 443 (507)
Q Consensus 425 ~~i~~~~~s-~~~~~l~s~~ 443 (507)
..+++++|- |+.+.|+..+
T Consensus 255 ~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 255 KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCccceEeCCCcCEEEEEe
Confidence 778888885 4555554444
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0011 Score=66.49 Aligned_cols=135 Identities=13% Similarity=0.150 Sum_probs=96.1
Q ss_pred cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEcc-----CCCeEEEEeCCCCcEEEEeCCCce--eEEE-E--eecCc
Q psy8285 183 LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKP-----RTTDLAVTNTCTEYIDLWHEQEER--LIQK-L--RTHMH 252 (507)
Q Consensus 183 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~dg~i~iwd~~~~~--~~~~-~--~~~~~ 252 (507)
....|+-.|++.|+...-..+. ...+|..++-.. .....++| -.+..+..||.+-.. ++.. . .....
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~--~~~~v~~~~p~~K~aqlt~e~tflG-ls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVH--DDIPVVDIAPDSKFAQLTNEQTFLG-LSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCceEEEecCCCcEEEEeecC--CCcceeEecccccccccCCCceEEE-ECCCceEEeccCCCCCceeeccccccccCC
Confidence 4578888999999988877763 233355443321 12344556 678899999987532 2211 1 12344
Q ss_pred cEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcC
Q psy8285 253 QVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFR 321 (507)
Q Consensus 253 ~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~ 321 (507)
...|++- ...+||+|+.+|.|++||--. ......+.+...+|..+..+.||+++++.++..+.+++..
T Consensus 579 ~Fs~~aTt~~G~iavgs~~G~IRLyd~~g-~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~ 647 (794)
T PF08553_consen 579 NFSCFATTEDGYIAVGSNKGDIRLYDRLG-KRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL 647 (794)
T ss_pred CceEEEecCCceEEEEeCCCcEEeecccc-hhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence 5677777 467999999999999999543 3456667788899999999999999999998888888863
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.026 Score=54.34 Aligned_cols=259 Identities=12% Similarity=0.051 Sum_probs=139.7
Q ss_pred hhhcCCCccccc---ceeeeeeCCCC-EEEEE--cCC----eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEE
Q psy8285 155 RILEAPSIINDF---YTSGLDWGYHD-TLAVA--LDT----SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLA 224 (507)
Q Consensus 155 ~~~~~~~~~~~~---~i~~~~~s~~~-~~~~~--~~~----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 224 (507)
.+++...+..+. .+..+.+||++ .++.+ .+| .++++|+.+++...-. +. ......+.|.++++.++
T Consensus 110 vllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~---~~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 110 VLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IE---NPKFSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EE---EEESEEEEECTTSSEEE
T ss_pred EEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-cc---ccccceEEEeCCCCEEE
Confidence 344444443333 34568899998 55543 333 5999999999765422 11 11223499999988887
Q ss_pred EEeCC----------CCcEEEEeCCCcee--EEEEeecCcc--EEEEEe--eCCEEEEEecC----CeEEEEECCCC---
Q psy8285 225 VTNTC----------TEYIDLWHEQEERL--IQKLRTHMHQ--VIAMCW--NGNLLSCGTIG----GNILHYDVRTH--- 281 (507)
Q Consensus 225 ~~~~~----------dg~i~iwd~~~~~~--~~~~~~~~~~--v~~~~~--~~~~l~~~~~d----g~i~i~d~~~~--- 281 (507)
..... ...|+.|.+.+... ...+...... ...+.. ++++|+..... ..+.+.++...
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~ 265 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSP 265 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTS
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCC
Confidence 76222 22378888776533 2344443333 345555 67776654332 34788888764
Q ss_pred CcCceeeecCCCceEEEEEcCCCCEEEEEe-C---CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEcc
Q psy8285 282 SDYPTAITREGDVVCGLKWSPNGRYLASGS-N---NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGG 357 (507)
Q Consensus 282 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d---~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 357 (507)
......+......+....-+..+.+++... + +.|...++...........+..+...+.--.+...+.++++....
T Consensus 266 ~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~ 345 (414)
T PF02897_consen 266 DAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRE 345 (414)
T ss_dssp S-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEE
T ss_pred cCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEE
Confidence 223344444444443333333455555444 2 667777777652111122444455543333444455577776654
Q ss_pred CCCCeEEEEeCCCCCeeeeeecC--CCeEEEEECCCCCeEEEEec--cCCCeEEEEeCCCccEE
Q psy8285 358 ICDQTVRLWNSMNGKEKCHVKTD--SQVTSILWSEQYRELVTSHG--KQDCSLKMWEYPRLHLI 417 (507)
Q Consensus 358 ~~d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~g--~~d~~i~v~d~~~~~~~ 417 (507)
.....|+++++..+.....+... +.+..+...+++..+..... ..-+.++.||+.+++..
T Consensus 346 ~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 346 NGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp TTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 23457899999844444444433 45667776777776655322 23467888898887653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.013 Score=52.90 Aligned_cols=215 Identities=16% Similarity=0.105 Sum_probs=125.4
Q ss_pred eeeCCCC--EEEE-EcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE
Q psy8285 171 LDWGYHD--TLAV-ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 171 ~~~s~~~--~~~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~ 247 (507)
..|.++. ++-+ -..+.|.-|+..+++.. .+. ..+.+.++..-..+..|+++ +..+.+++..++..+..+
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~----~p~~~~~~~~~d~~g~Lv~~---~~g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP----SPGGFSSGALIDAGGRLIAC---EHGVRLLDPDTGGKITLL 101 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE----CCCCcccceeecCCCeEEEE---ccccEEEeccCCceeEEe
Confidence 4455654 3333 37889999999877653 333 33445666665566677766 444667776655553333
Q ss_pred eecC-----ccEEEEEe--eCCEEEEEec-----------CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEE
Q psy8285 248 RTHM-----HQVIAMCW--NGNLLSCGTI-----------GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 248 ~~~~-----~~v~~~~~--~~~~l~~~~~-----------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 309 (507)
..-. ...+.... +|.+-+.... -|.++.+|.. +. ..+....+-..-+.++||||++.++.
T Consensus 102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~-g~-~~~l~~~~~~~~NGla~SpDg~tly~ 179 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD-GG-VVRLLDDDLTIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-CC-EEEeecCcEEecCceEECCCCCEEEE
Confidence 2111 12223333 3444433322 1334444432 22 34444444455678999999998888
Q ss_pred Ee-C-CcEEEEEcCC--CCCC--CCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC-CeEEEEeCCCCCeeeeeecC-C
Q psy8285 310 GS-N-NTVKIWDFRQ--LDAK--RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD-QTVRLWNSMNGKEKCHVKTD-S 381 (507)
Q Consensus 310 ~~-d-~~i~i~d~~~--~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~~~~~~~~~~~-~ 381 (507)
+. . +.|+-|++.. +... ..........+..-.++...+|. +.+++.. + +.|..|+.. ++.+..+..+ .
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~-lw~~a~~--~g~~v~~~~pd-G~l~~~i~lP~~ 255 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN-LWVAAVW--GGGRVVRFNPD-GKLLGEIKLPVK 255 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC-EEEeccc--CCceEEEECCC-CcEEEEEECCCC
Confidence 77 3 8888888762 2111 11222223456667788888884 4433331 3 399999987 9999988887 7
Q ss_pred CeEEEEEC-CCCCeEEEEe
Q psy8285 382 QVTSILWS-EQYRELVTSH 399 (507)
Q Consensus 382 ~i~~~~~s-~~~~~l~~~~ 399 (507)
.+++++|- |+.+.|++++
T Consensus 256 ~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 256 RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCccceEeCCCcCEEEEEe
Confidence 78888884 4556666643
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.017 Score=50.26 Aligned_cols=198 Identities=13% Similarity=0.181 Sum_probs=109.4
Q ss_pred EEeecCccEEEEEee---CCEEEEEecCCeEEEEECCCCCcCceeee-cCCCceEEEEEcCCCCEEEEEe-CCcEEEEEc
Q psy8285 246 KLRTHMHQVIAMCWN---GNLLSCGTIGGNILHYDVRTHSDYPTAIT-REGDVVCGLKWSPNGRYLASGS-NNTVKIWDF 320 (507)
Q Consensus 246 ~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~ 320 (507)
.+.+-...+..++|+ +.++++....+.|..++.. ++ ....+. ........+++..++.++++.- ++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~-vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK-VLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC-EEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 344555669999993 5577778888888888875 33 333332 2245678899988887766654 489999998
Q ss_pred CCCCCCCCe---eee-----cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC---CCeeeee-----e----cC
Q psy8285 321 RQLDAKRPQ---VNN-----QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN---GKEKCHV-----K----TD 380 (507)
Q Consensus 321 ~~~~~~~~~---~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---~~~~~~~-----~----~~ 380 (507)
......... ..+ ..+...+-.++|+|.+..++++-. ..-..+|.+.. ...+... . .-
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE---~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE---RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE---SSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC---CCChhhEEEccccCccceeecccccccccccee
Confidence 543211111 111 124456899999999888887654 44455555543 2211111 1 11
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccc---------cceeEEEECCCCCEEEEEeCCCcEEEE
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQ---------ERILSAVLSPDQTCVAAASADETISIW 451 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~s~~~dg~i~iw 451 (507)
..+.+++++|....|++. ..+...|..+| .+|+.+..+.-.. ..--.|+|.++|+. +..+.-+..++|
T Consensus 171 ~d~S~l~~~p~t~~lliL-S~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L-YIvsEpNlfy~f 247 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLIL-SDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL-YIVSEPNLFYRF 247 (248)
T ss_dssp S---EEEEETTTTEEEEE-ETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--E-EEEETTTEEEEE
T ss_pred ccccceEEcCCCCeEEEE-ECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCE-EEEcCCceEEEe
Confidence 458899999987776665 56788999999 6777666553211 23578999999864 445566666554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0021 Score=64.62 Aligned_cols=140 Identities=12% Similarity=0.134 Sum_probs=100.2
Q ss_pred CeEEEEeCCCCcEEEEeCCCceeEEEEeecCcc-EEEEEee-------CCEEEEEecCCeEEEEECCCCCcCcee----e
Q psy8285 221 TDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQ-VIAMCWN-------GNLLSCGTIGGNILHYDVRTHSDYPTA----I 288 (507)
Q Consensus 221 ~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~-------~~~l~~~~~dg~i~i~d~~~~~~~~~~----~ 288 (507)
..|+........|+-.|+..|+.+.....+... |..++.+ +...+.|-.+..+..||.+-....... .
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 344443234578999999999999999887654 7777662 445667777889999999865421111 1
Q ss_pred ecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEe
Q psy8285 289 TREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWN 367 (507)
Q Consensus 289 ~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d 367 (507)
........|++-+.+| +||+|+ +|.|++||--.. +....+.+-..+|..|..+.||+++++++ +..+.+++
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~---~AKT~lp~lG~pI~~iDvt~DGkwilaTc----~tyLlLi~ 645 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGK---RAKTALPGLGDPIIGIDVTADGKWILATC----KTYLLLID 645 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCCcEEeecccch---hhhhcCCCCCCCeeEEEecCCCcEEEEee----cceEEEEE
Confidence 1234557788877777 566677 699999995332 44455666789999999999999999887 67788887
Q ss_pred C
Q psy8285 368 S 368 (507)
Q Consensus 368 ~ 368 (507)
.
T Consensus 646 t 646 (794)
T PF08553_consen 646 T 646 (794)
T ss_pred E
Confidence 5
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00011 Score=71.46 Aligned_cols=112 Identities=16% Similarity=0.213 Sum_probs=89.9
Q ss_pred eEEEEccCCCcEEEEE-ccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEE
Q psy8285 340 KAIAWCPWEPTLLATG-GGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIE 418 (507)
Q Consensus 340 ~~~~~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~ 418 (507)
+-..|+|..+.+.+.. +....|.|.||- .+|++......+-.+++++|+|..-.|+. |-+-|.+.+|...+.+.-.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~--gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQ--GWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhh--ccccceeEEEecCCceeee
Confidence 4467888776443322 112367888884 67887776666666788999999888888 8889999999988777666
Q ss_pred EeeccccceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 419 ELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 419 ~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
....|..+|..+.|||+|..|+++..-|.|.+|.+.
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 667899999999999999999999999999999987
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00017 Score=41.97 Aligned_cols=39 Identities=38% Similarity=0.595 Sum_probs=34.3
Q ss_pred ccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 414 LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 414 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
++++..+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778889999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.05 Score=49.89 Aligned_cols=225 Identities=13% Similarity=0.075 Sum_probs=112.4
Q ss_pred EEEccCCCeEEEEeCCCC--cEEEEeCCCceeEEEEeecCc-c-EEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeee
Q psy8285 214 VAWKPRTTDLAVTNTCTE--YIDLWHEQEERLIQKLRTHMH-Q-VIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAIT 289 (507)
Q Consensus 214 ~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~-~-v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 289 (507)
=+|.++|+.|+.++..+| .+.+.|+.+++..+.-.+... . -..++-+++.++-......|.-.|+++.+ ......
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e-~~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE-ERVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc-EEEEEE
Confidence 367888988887745555 577778888876665443211 1 13344466776665556788889999876 334444
Q ss_pred cCCCceEEEEE--cCCCCEEEEEe----CC-------------------cEEEEEcCCCCCCCCeeeecCCCCCeeEEEE
Q psy8285 290 REGDVVCGLKW--SPNGRYLASGS----NN-------------------TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAW 344 (507)
Q Consensus 290 ~~~~~v~~~~~--~~~~~~l~~~~----d~-------------------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 344 (507)
.....+-...| +.|+..++..- |. .|...|+.++ + ...+......+..+.|
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG---~-~~~v~~~~~wlgH~~f 195 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG---E-RKVVFEDTDWLGHVQF 195 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT------EEEEEEESS-EEEEEE
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC---c-eeEEEecCccccCccc
Confidence 44555544555 34566654432 11 2445566655 2 3333335667889999
Q ss_pred ccCCCcEEEEEcc-CCCC-eEEEEeCCC-CCeeeeeecC---CCeEEEEECCCCCeEEEEe---ccCCCeEEEEeCCCcc
Q psy8285 345 CPWEPTLLATGGG-ICDQ-TVRLWNSMN-GKEKCHVKTD---SQVTSILWSEQYRELVTSH---GKQDCSLKMWEYPRLH 415 (507)
Q Consensus 345 ~~~~~~~~~~~~~-~~d~-~i~i~d~~~-~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~---g~~d~~i~v~d~~~~~ 415 (507)
+|....+++-|-+ ..+. .-|||-+++ +.....+..+ ..+..=-|.|||..|.... +..+..|.-+|..+++
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 9998888887642 1222 125554432 2323333222 2355567999999887632 3335568888888876
Q ss_pred EEEEeeccccceeEEEECCCCCEEEEEeCC
Q psy8285 416 LIEELKIHQERILSAVLSPDQTCVAAASAD 445 (507)
Q Consensus 416 ~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d 445 (507)
...... ......+.-++||++++-=+.|
T Consensus 276 ~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 276 RRRLME--MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred ceEEEe--CCceeeeEEcCCCCEEEecCCC
Confidence 543222 2234566778899887754443
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00043 Score=65.41 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=76.7
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecccccee-EEEECCCCCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERIL-SAVLSPDQTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
..+..+.|+|.-..+|. +..+|.|.+..+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++-|+.++..+
T Consensus 21 ~~i~~~ewnP~~dLiA~--~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIAT--RTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhhe--eccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 46888999999999999 7899999999887 888888887777777 9999999999999999999999999998877
Q ss_pred cc--eeecCCCcceEEe
Q psy8285 460 RK--ARQVGSGSSLEFA 474 (507)
Q Consensus 460 ~~--~~~~~~~~~~~~~ 474 (507)
.. ......+...-|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 76 4444455555554
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.12 Score=50.99 Aligned_cols=194 Identities=13% Similarity=0.097 Sum_probs=108.5
Q ss_pred CCeEEEEeCCCCcEEEEeCCCceeEEEEeecC-ccE----------EEEEeeCCEEEEEecCCeEEEEECCCCCcCceee
Q psy8285 220 TTDLAVTNTCTEYIDLWHEQEERLIQKLRTHM-HQV----------IAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAI 288 (507)
Q Consensus 220 ~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v----------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 288 (507)
+..++++ +.++.|.-+|..+++.+..+.... ..+ ..++..+..++.++.++.+..+|.++++..-...
T Consensus 69 ~g~vyv~-s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 69 DGVMYVT-TSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CCEEEEE-CCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 4567777 778899999999998887765311 111 1134455677788889999999999887432221
Q ss_pred ec-CC--CceEEEEEcCCCCEEEEEe------CCcEEEEEcCCCCCCCCeeeecCC------------------------
Q psy8285 289 TR-EG--DVVCGLKWSPNGRYLASGS------NNTVKIWDFRQLDAKRPQVNNQCH------------------------ 335 (507)
Q Consensus 289 ~~-~~--~~v~~~~~~~~~~~l~~~~------d~~i~i~d~~~~~~~~~~~~~~~~------------------------ 335 (507)
.. +. ..+.+--.--++..++..+ ++.|.-+|.++++..-........
T Consensus 148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~ 227 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDA 227 (527)
T ss_pred cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCc
Confidence 11 11 0111100011444443322 367888888877221111111100
Q ss_pred ----CCCee-EEEEccCCCcEEEEEccC---C-------C----CeEEEEeCCCCCeeeeeecC----------CCeEEE
Q psy8285 336 ----LSAVK-AIAWCPWEPTLLATGGGI---C-------D----QTVRLWNSMNGKEKCHVKTD----------SQVTSI 386 (507)
Q Consensus 336 ----~~~v~-~~~~~~~~~~~~~~~~~~---~-------d----~~i~i~d~~~~~~~~~~~~~----------~~i~~~ 386 (507)
.+.+. .+++.|... ++..+.+. . | ..|.-.|+++|+....++.. ....-+
T Consensus 228 ~~~gg~~~W~~~s~D~~~~-lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~ 306 (527)
T TIGR03075 228 WKTGGGATWGTGSYDPETN-LIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF 306 (527)
T ss_pred cccCCCCccCceeEcCCCC-eEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence 11111 345666543 33333321 0 1 26778899999987766541 122223
Q ss_pred EECCCCC---eEEEEeccCCCeEEEEeCCCccEE
Q psy8285 387 LWSEQYR---ELVTSHGKQDCSLKMWEYPRLHLI 417 (507)
Q Consensus 387 ~~s~~~~---~l~~~~g~~d~~i~v~d~~~~~~~ 417 (507)
.+..+|+ .++. +..+|.++++|-.+++++
T Consensus 307 d~~~~G~~~~~v~~--~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 307 DLKKDGKPRKLLAH--ADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EeccCCcEEEEEEE--eCCCceEEEEECCCCcee
Confidence 3335666 4555 789999999999999886
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0075 Score=59.83 Aligned_cols=150 Identities=9% Similarity=0.053 Sum_probs=90.3
Q ss_pred CceEEEEEcCCCCEEEEEe-------C--CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEcc------
Q psy8285 293 DVVCGLKWSPNGRYLASGS-------N--NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGG------ 357 (507)
Q Consensus 293 ~~v~~~~~~~~~~~l~~~~-------d--~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------ 357 (507)
..+.+.+++|||+.++... | ..+.+++.... . ..+. .....+...|+|+|..+.+...+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~----~-~~lt-~g~~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV----A-VQVL-EGHSLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc----c-eeee-cCCCCCCceECCCCCceEEEecCcceEEE
Confidence 4677899999999877654 3 35566564221 1 2222 12347889999998766665421
Q ss_pred ---CCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEE---EeCCCcc-EE---EEeec-cccc
Q psy8285 358 ---ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKM---WEYPRLH-LI---EELKI-HQER 426 (507)
Q Consensus 358 ---~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v---~d~~~~~-~~---~~~~~-~~~~ 426 (507)
...+.+.+.++..++... .....|..+.|||||..++... ++.|++ -....++ .+ ..+.. -...
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~---~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII---GGKVYLAVVEQTEDGQYALTNPREVGPGLGDT 498 (591)
T ss_pred eccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE---CCEEEEEEEEeCCCCceeecccEEeecccCCc
Confidence 012344444555444333 3345799999999999999853 577777 4434443 11 11222 2233
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 427 ILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 427 i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
+.++.|..++.++ .+..++.-.+|.+.
T Consensus 499 ~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 499 AVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred cccceEecCCEEE-EEecCCCCceEEEe
Confidence 6889999998855 55555555566654
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.081 Score=47.53 Aligned_cols=231 Identities=13% Similarity=0.119 Sum_probs=109.0
Q ss_pred cceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 166 FYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 166 ~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
+.++.+.+..+..++++..+.| +.....|+.-....+...-......+....++..++++ ..|.|+.=. ..++.-+
T Consensus 62 ~~l~~I~f~~~~g~ivG~~g~l-l~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~--~~G~iy~T~-DgG~tW~ 137 (302)
T PF14870_consen 62 YHLNSISFDGNEGWIVGEPGLL-LHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAG--DRGAIYRTT-DGGKTWQ 137 (302)
T ss_dssp -EEEEEEEETTEEEEEEETTEE-EEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEE--TT--EEEES-STTSSEE
T ss_pred eeEEEEEecCCceEEEcCCceE-EEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc--CCCcEEEeC-CCCCCee
Confidence 4466777776655556666543 33334444333322211012333444444444334433 455544322 2333222
Q ss_pred -EEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcC-
Q psy8285 246 -KLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFR- 321 (507)
Q Consensus 246 -~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~- 321 (507)
....-...+..+.- ++++++++.......-||.-... -..........|..+.|.|++.+.+.+..+.|+.=+..
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPD 216 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TT
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCC
Confidence 23334456666665 67777777655555677755322 12222334678999999999988777756888887722
Q ss_pred CCC-CCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec----CCCeEEEEECCCCCeEE
Q psy8285 322 QLD-AKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT----DSQVTSILWSEQYRELV 396 (507)
Q Consensus 322 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~ 396 (507)
..+ -.+.+.......-.+..++|.+++ .+.++++ .|.+ +.....|+.-..... ...+..+.|.++.+-++
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg---~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~ 291 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPN-EIWAVGG---SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV 291 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS--EEEEES---TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE
T ss_pred CccccccccCCcccCceeeEEEEecCCC-CEEEEeC---CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE
Confidence 110 001111122233347899999876 6777775 6654 445566665444432 35688899987777777
Q ss_pred EEeccCCCeEEEE
Q psy8285 397 TSHGKQDCSLKMW 409 (507)
Q Consensus 397 ~~~g~~d~~i~v~ 409 (507)
. | .+|.|--|
T Consensus 292 l--G-~~G~ll~~ 301 (302)
T PF14870_consen 292 L--G-QDGVLLRY 301 (302)
T ss_dssp E----STTEEEEE
T ss_pred E--C-CCcEEEEe
Confidence 7 4 57776544
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.17 Score=51.30 Aligned_cols=214 Identities=13% Similarity=0.076 Sum_probs=125.5
Q ss_pred eEEEEECCCCceeEEEecCCC-CCCceEEEEEccC-CCeEEEEeC---------CCCcEEEEeCCCceeEEEEee--cCc
Q psy8285 186 SVYTWNTKTNKTQLLVEYPTY-DNAYISCVAWKPR-TTDLAVTNT---------CTEYIDLWHEQEERLIQKLRT--HMH 252 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~---------~dg~i~iwd~~~~~~~~~~~~--~~~ 252 (507)
.++++|.++.+.....++... ..-.|.++.|..| +.++++|.+ ..|.|.++....++.++.... -.+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 467777777766655555420 1123445558877 677777621 257888888776444433332 234
Q ss_pred cEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCee
Q psy8285 253 QVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQV 330 (507)
Q Consensus 253 ~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~ 330 (507)
.+.++.- +|+++|.-+ ..|++|++.+.+ ..+....+..++..+...-.+..+++|.- +.+.+...+..+. ....
T Consensus 831 av~aL~~fngkllA~In--~~vrLye~t~~~-eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg-~f~e 906 (1096)
T KOG1897|consen 831 AVYALVEFNGKLLAGIN--QSVRLYEWTTER-ELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEG-NFEE 906 (1096)
T ss_pred ceeehhhhCCeEEEecC--cEEEEEEccccc-eehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCC-ceEE
Confidence 4555543 888887664 689999998874 34455567778888888889999999983 7776665554311 1111
Q ss_pred e-ecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC-------------------CCeeeeeecCCCeEE--EEE
Q psy8285 331 N-NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-------------------GKEKCHVKTDSQVTS--ILW 388 (507)
Q Consensus 331 ~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-------------------~~~~~~~~~~~~i~~--~~~ 388 (507)
. -.-+..+.+++.+-.+. .++.+-. ++.+.+....+ |+.+..+.+..-+.+ -..
T Consensus 907 vArD~~p~Wmtaveil~~d-~ylgae~---~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~ 982 (1096)
T KOG1897|consen 907 VARDYNPNWMTAVEILDDD-TYLGAEN---SGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSM 982 (1096)
T ss_pred eehhhCccceeeEEEecCc-eEEeecc---cccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeeccccc
Confidence 1 12366778888887655 3443332 66666654432 112222222222333 133
Q ss_pred CCCCCeEEEEeccCCCeEEEE
Q psy8285 389 SEQYRELVTSHGKQDCSLKMW 409 (507)
Q Consensus 389 s~~~~~l~~~~g~~d~~i~v~ 409 (507)
+|-+..++. |..+|.|-+.
T Consensus 983 ~~~~~~vlf--gTv~GsIG~i 1001 (1096)
T KOG1897|consen 983 IPLEPKVLF--GTVNGSIGII 1001 (1096)
T ss_pred cCCCCcEEE--EEccceEEEE
Confidence 455666777 6778887654
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.083 Score=45.81 Aligned_cols=182 Identities=15% Similarity=0.095 Sum_probs=112.0
Q ss_pred ccceeeeeeCCCC-EEE-EE--cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC
Q psy8285 165 DFYTSGLDWGYHD-TLA-VA--LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 165 ~~~i~~~~~s~~~-~~~-~~--~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
..+...+.+..++ ++- .| ....|+.+|+.+++......++. .---..++...+ +....+ -.++...+||..+
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~--~~FgEGit~~~d-~l~qLT-Wk~~~~f~yd~~t 119 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP--RYFGEGITILGD-KLYQLT-WKEGTGFVYDPNT 119 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT--T--EEEEEEETT-EEEEEE-SSSSEEEEEETTT
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc--cccceeEEEECC-EEEEEE-ecCCeEEEEcccc
Confidence 3456778885555 433 33 34489999999999888877753 333345555533 344445 7999999999999
Q ss_pred ceeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeee--cCC---CceEEEEEcCCCCEEEEEe-CCc
Q psy8285 241 ERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAIT--REG---DVVCGLKWSPNGRYLASGS-NNT 314 (507)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~---~~v~~~~~~~~~~~l~~~~-d~~ 314 (507)
.+.+.++.- ...=+.++.+++.|+.......++.+|..+.+. ...+. ... ..++.+.|. +|...|-.- ...
T Consensus 120 l~~~~~~~y-~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~-~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~ 196 (264)
T PF05096_consen 120 LKKIGTFPY-PGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKE-VRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDR 196 (264)
T ss_dssp TEEEEEEE--SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SE-EEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSE
T ss_pred ceEEEEEec-CCcceEEEcCCCEEEEECCccceEEECCcccce-EEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCe
Confidence 999888863 456788889888888888888999999887652 22221 122 235566665 454444333 356
Q ss_pred EEEEEcCCCCCCCCeeeec---------------CCCCCeeEEEEccCCCcEEEEEc
Q psy8285 315 VKIWDFRQLDAKRPQVNNQ---------------CHLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
|...|..++ +....+. ....-.+.|++.|....++++|-
T Consensus 197 I~~Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 197 IVRIDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEEeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 666676666 3222110 11345789999999999999874
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.016 Score=54.17 Aligned_cols=136 Identities=13% Similarity=0.189 Sum_probs=98.8
Q ss_pred EEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCC-------eEEEEeCCCCcEEEEeCCCce--eEEEEeecC
Q psy8285 181 VALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTT-------DLAVTNTCTEYIDLWHEQEER--LIQKLRTHM 251 (507)
Q Consensus 181 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~~dg~i~iwd~~~~~--~~~~~~~~~ 251 (507)
+.....++-.|++.|+......+ +.. |.-+.+.|+.+ .-++| -.+..|.-||++-.. .+...++|.
T Consensus 352 ~~~~~~l~klDIE~GKIVeEWk~---~~d-i~mv~~t~d~K~~Ql~~e~TlvG-Ls~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 352 GGEQDKLYKLDIERGKIVEEWKF---EDD-INMVDITPDFKFAQLTSEQTLVG-LSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred CCCcCcceeeecccceeeeEeec---cCC-cceeeccCCcchhcccccccEEe-ecCCceEEecccccCcceeeeeeccc
Confidence 34567788889999998877776 333 77777877652 22344 578889999987432 222223222
Q ss_pred ----ccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCC
Q psy8285 252 ----HQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQ 322 (507)
Q Consensus 252 ----~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~ 322 (507)
....|++- ...++++|+.+|.|++||- .+......+++...+|..+..+.+|++|+..++..+.+.++.-
T Consensus 427 y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~~ 501 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTLI 501 (644)
T ss_pred cccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEec
Confidence 23445555 5678999999999999998 4444667788899999999999999999999988888887653
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0012 Score=62.51 Aligned_cols=93 Identities=18% Similarity=0.300 Sum_probs=76.7
Q ss_pred CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEE-EEEe--eCCEEEEEecCCeEEEEECCCCCcC
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVI-AMCW--NGNLLSCGTIGGNILHYDVRTHSDY 284 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 284 (507)
...+.-+.|+|.-..+|++ ..+|.|.+..++ .+.+.++..+...++ +++| ||+.||.|-.||+|++.|+.++...
T Consensus 20 ~~~i~~~ewnP~~dLiA~~-t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATR-TEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhhee-ccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 3457889999999999999 999999999988 777888887777777 9999 8999999999999999999988744
Q ss_pred ceeeecCCCceEEEEEcC
Q psy8285 285 PTAITREGDVVCGLKWSP 302 (507)
Q Consensus 285 ~~~~~~~~~~v~~~~~~~ 302 (507)
..........|.++-|.+
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 443344556777777763
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.053 Score=53.99 Aligned_cols=173 Identities=12% Similarity=0.040 Sum_probs=94.8
Q ss_pred CCceEEEEEccCCCeEEEEeC-----CCC--cEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEec---------
Q psy8285 208 NAYISCVAWKPRTTDLAVTNT-----CTE--YIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTI--------- 269 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~-----~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~--------- 269 (507)
...+...+++|+|+.++.... .|. .|.+++. .+.. ..+.. ......-.| +++.|.+...
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEec
Confidence 346889999999999988721 243 4555554 2222 33322 123566666 5565555532
Q ss_pred ---CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEE---EEcCCCC-CCCCeeeec-CCCCCeeE
Q psy8285 270 ---GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKI---WDFRQLD-AKRPQVNNQ-CHLSAVKA 341 (507)
Q Consensus 270 ---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i---~d~~~~~-~~~~~~~~~-~~~~~v~~ 341 (507)
.+.+.+.+++.++ ... .....|..+.|||||..++...++.|++ -....+. .......+. .-...+..
T Consensus 426 ~~~~gql~~~~vd~ge-~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 426 DPATGQLARTPVDASA-VAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred cCCCceEEEEeccCch-hhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 2344444555443 111 3356799999999999998877787777 3333331 000111122 22334688
Q ss_pred EEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec---CCCeEEEEECC
Q psy8285 342 IAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT---DSQVTSILWSE 390 (507)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---~~~i~~~~~s~ 390 (507)
+.|.+++. |++... ..+..+...++..... ..+.. ...+..++-++
T Consensus 502 l~W~~~~~-L~V~~~-~~~~~v~~v~vDG~~~-~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 502 LDWRTGDS-LVVGRS-DPEHPVWYVNLDGSNS-DALPSRNLSAPVVAVAASP 550 (591)
T ss_pred ceEecCCE-EEEEec-CCCCceEEEecCCccc-cccCCCCccCceEEEecCC
Confidence 99999885 554332 2244555555543332 22222 24566676665
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00017 Score=41.96 Aligned_cols=33 Identities=30% Similarity=0.534 Sum_probs=28.6
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWN 37 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd 37 (507)
+.+|...|.+++|+|++.. +++++ .|+.+++||
T Consensus 8 ~~~~~~~i~~~~~~~~~~~-~~~~~--~d~~~~~~~ 40 (40)
T smart00320 8 LKGHTGPVTSVAFSPDGKY-LASAS--DDGTIKLWD 40 (40)
T ss_pred EEecCCceeEEEECCCCCE-EEEec--CCCeEEEcC
Confidence 4578999999999998875 77777 799999997
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.096 Score=45.21 Aligned_cols=197 Identities=14% Similarity=0.123 Sum_probs=119.0
Q ss_pred CCEEEEEecCCe-EEEEECCCCCcCceeeecCCCc--eEEEEEcCCCCEEEEEe---C---CcEEEEEcCCCCCCCCeee
Q psy8285 261 GNLLSCGTIGGN-ILHYDVRTHSDYPTAITREGDV--VCGLKWSPNGRYLASGS---N---NTVKIWDFRQLDAKRPQVN 331 (507)
Q Consensus 261 ~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~---d---~~i~i~d~~~~~~~~~~~~ 331 (507)
..-++.+-.-|+ ..++|....+.+.. +...++. .-.-.|||||++|+..- | |.|-+||.+.. .+.+-.
T Consensus 80 ~ravafARrPGtf~~vfD~~~~~~pv~-~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE 156 (366)
T COG3490 80 PRAVAFARRPGTFAMVFDPNGAQEPVT-LVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGE 156 (366)
T ss_pred cceEEEEecCCceEEEECCCCCcCcEE-EecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecc
Confidence 445555555554 45788877664332 2222111 11236999999988753 2 78999999854 466777
Q ss_pred ecCCCCCeeEEEEccCCCcEEEEEcc---------------CCCCeEEEEeCCCCCeeeeeecC-----CCeEEEEECCC
Q psy8285 332 NQCHLSAVKAIAWCPWEPTLLATGGG---------------ICDQTVRLWNSMNGKEKCHVKTD-----SQVTSILWSEQ 391 (507)
Q Consensus 332 ~~~~~~~v~~~~~~~~~~~~~~~~~~---------------~~d~~i~i~d~~~~~~~~~~~~~-----~~i~~~~~s~~ 391 (507)
+..|.-....+.|.+||+.+++..++ +|.-.+.+.|..+|+.+.+.... -.+..++..+|
T Consensus 157 ~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~d 236 (366)
T COG3490 157 FSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRD 236 (366)
T ss_pred cccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCC
Confidence 88888888899999999766665431 23345566666666655433222 36788888888
Q ss_pred CCeEEEEeccCCC-----eEEEEeCCCccEEEEeec-------cccceeEEEECCCCCEEEEEeC-CCcEEEEecCCCCc
Q psy8285 392 YRELVTSHGKQDC-----SLKMWEYPRLHLIEELKI-------HQERILSAVLSPDQTCVAAASA-DETISIWNCFPRDK 458 (507)
Q Consensus 392 ~~~l~~~~g~~d~-----~i~v~d~~~~~~~~~~~~-------~~~~i~~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~~ 458 (507)
|..++.+ ...| --.+=-...++++.-+.. ....|-+++.+.+..+++..+- -+...+||..++..
T Consensus 237 gtvwfgc--Qy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~v 314 (366)
T COG3490 237 GTVWFGC--QYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAV 314 (366)
T ss_pred CcEEEEE--EeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcE
Confidence 8777652 1111 111111123344443321 2244677888876666655544 45678899999987
Q ss_pred ccce
Q psy8285 459 KRKA 462 (507)
Q Consensus 459 ~~~~ 462 (507)
....
T Consensus 315 v~~a 318 (366)
T COG3490 315 VSEA 318 (366)
T ss_pred Eecc
Confidence 6653
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.044 Score=40.25 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=68.3
Q ss_pred eeEEEEc---cCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc
Q psy8285 339 VKAIAWC---PWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 339 v~~~~~~---~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~ 415 (507)
|+++++. .+|..-|++++. |..|++|+- .+.+..+.....+++++-...++ ++. +..+|+|-+|+- .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~--D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~-F~Y--~l~NGTVGvY~~--~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSD--DFEIRVFKG--DEIVAEITETDKVTSLCSLGGGR-FAY--ALANGTVGVYDR--SQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecC--CcEEEEEeC--CcEEEEEecccceEEEEEcCCCE-EEE--EecCCEEEEEeC--cc
Confidence 4455544 455556666654 999999984 47788888888899998887744 555 678999999985 34
Q ss_pred EEEEeeccccceeEEEEC-CCC---CEEEEEeCCCcEE
Q psy8285 416 LIEELKIHQERILSAVLS-PDQ---TCVAAASADETIS 449 (507)
Q Consensus 416 ~~~~~~~~~~~i~~~~~s-~~~---~~l~s~~~dg~i~ 449 (507)
.+...+.... +.++.+. .++ .-|++|-.+|.|-
T Consensus 73 RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4555554333 5555543 332 3688888888764
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.075 Score=49.25 Aligned_cols=196 Identities=10% Similarity=0.073 Sum_probs=90.3
Q ss_pred CCEEEEEe-cCCeEEEEECCCCCcCce---eeec-------CCCceEEEEEcCCCCEEEEEe-----C--CcEEEEEcCC
Q psy8285 261 GNLLSCGT-IGGNILHYDVRTHSDYPT---AITR-------EGDVVCGLKWSPNGRYLASGS-----N--NTVKIWDFRQ 322 (507)
Q Consensus 261 ~~~l~~~~-~dg~i~i~d~~~~~~~~~---~~~~-------~~~~v~~~~~~~~~~~l~~~~-----d--~~i~i~d~~~ 322 (507)
.++|+..+ ..+.|+|.|+.+...... .+.. .-..-..+-.-|+|++++++- + |.+.++|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 34455544 567788888775432221 1111 001223344557888887752 1 5678888776
Q ss_pred CCCCCCeeeecCC---CCCeeEEEEccCCCcEEEEEc-----------------cCCCCeEEEEeCCCCCeeeeeecCC-
Q psy8285 323 LDAKRPQVNNQCH---LSAVKAIAWCPWEPTLLATGG-----------------GICDQTVRLWNSMNGKEKCHVKTDS- 381 (507)
Q Consensus 323 ~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~-----------------~~~d~~i~i~d~~~~~~~~~~~~~~- 381 (507)
. ......+.. ..--+.+-|.|..+.++++.- +.+..++.+||+.+.+.++++....
T Consensus 167 f---~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 167 F---EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp -----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred c---cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 5 444444332 234567888887654444431 1235789999999999999988762
Q ss_pred --CeEEEEE--CCCCCeEEEEeccCCCeEEEEeC-CCc----cEEEEeecc-----------------ccceeEEEECCC
Q psy8285 382 --QVTSILW--SEQYRELVTSHGKQDCSLKMWEY-PRL----HLIEELKIH-----------------QERILSAVLSPD 435 (507)
Q Consensus 382 --~i~~~~~--s~~~~~l~~~~g~~d~~i~v~d~-~~~----~~~~~~~~~-----------------~~~i~~~~~s~~ 435 (507)
-...+.| .|+..+=+++++ -.++|..|-- ..+ +.+..+... ..-|+.|..|.|
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~a-Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD 322 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCA-LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD 322 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE---EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred CCceEEEEecCCCCccceEEEEe-ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence 2445555 455666665433 3344444432 333 222222211 234799999999
Q ss_pred CCEEEEEe-CCCcEEEEecCCCCccc
Q psy8285 436 QTCVAAAS-ADETISIWNCFPRDKKR 460 (507)
Q Consensus 436 ~~~l~s~~-~dg~i~iw~~~~~~~~~ 460 (507)
.++|..+. .+|.|+.||+......+
T Consensus 323 DrfLYvs~W~~GdvrqYDISDP~~Pk 348 (461)
T PF05694_consen 323 DRFLYVSNWLHGDVRQYDISDPFNPK 348 (461)
T ss_dssp S-EEEEEETTTTEEEEEE-SSTTS-E
T ss_pred CCEEEEEcccCCcEEEEecCCCCCCc
Confidence 99997665 58999999998755433
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.23 Score=46.74 Aligned_cols=83 Identities=18% Similarity=0.086 Sum_probs=54.9
Q ss_pred CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC--CeEEEEECCC-----------------CCeEE
Q psy8285 336 LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS--QVTSILWSEQ-----------------YRELV 396 (507)
Q Consensus 336 ~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~i~~~~~s~~-----------------~~~l~ 396 (507)
...+.++..+|.+ .++++... =|.|.++|+.++..++.+++-. .+.-+..... ..+|+
T Consensus 307 ~R~~~~i~~sP~~-~laA~tDs--lGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 307 KREGESICLSPSG-RLAAVTDS--LGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred CceEEEEEECCCC-CEEEEEcC--CCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 3457889999997 56655543 7999999999998888777642 1111111111 12333
Q ss_pred EEeccCCCeEEEEeCCCccEEEEeec
Q psy8285 397 TSHGKQDCSLKMWEYPRLHLIEELKI 422 (507)
Q Consensus 397 ~~~g~~d~~i~v~d~~~~~~~~~~~~ 422 (507)
.- .-.-|.|.||.++++..+..+..
T Consensus 384 Iy-aprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 384 IY-APRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EE-eccCCeEEEEecCCCCEEEEEEe
Confidence 32 56788999999998888777653
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.16 Score=44.07 Aligned_cols=269 Identities=11% Similarity=0.009 Sum_probs=145.5
Q ss_pred eeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce---eEEEE
Q psy8285 171 LDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER---LIQKL 247 (507)
Q Consensus 171 ~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~---~~~~~ 247 (507)
+.++.+....+-.+..++|.|+.+.........-. ..+--.++.. .|++..++ ..+.-+.+.|+.+.. .....
T Consensus 92 v~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~ln-t~gyaygv~v--sGn~aYVa-dlddgfLivdvsdpssP~lagry 167 (370)
T COG5276 92 VRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLN-TDGYAYGVYV--SGNYAYVA-DLDDGFLIVDVSDPSSPQLAGRY 167 (370)
T ss_pred eEecccEEEEEcCCCceEEEeccCCCCcceecccc-CCceEEEEEe--cCCEEEEe-eccCcEEEEECCCCCCceeeeee
Confidence 55566665555677789999998865443332211 2233444444 47888888 666777788887643 33344
Q ss_pred eecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCC-ceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCC
Q psy8285 248 RTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGD-VVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAK 326 (507)
Q Consensus 248 ~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~ 326 (507)
.........++.+|++-..+..|+-+.+.|+.....+...-.-..+ .++++..+++..+++... .-+.+-|....+..
T Consensus 168 a~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~-egvlivd~s~~ssp 246 (370)
T COG5276 168 ALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD-EGVLIVDVSGPSSP 246 (370)
T ss_pred ccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc-cceEEEecCCCCCc
Confidence 4444445677778999999999999999999987644433332333 678888887655555444 44566677665322
Q ss_pred CCeeeecCCCCCeeEE-EEccCCCcEEEEEccCCCCeEEEEeCCCCCeee---eeecCC-CeEEEEECCCCCeEEEEecc
Q psy8285 327 RPQVNNQCHLSAVKAI-AWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC---HVKTDS-QVTSILWSEQYRELVTSHGK 401 (507)
Q Consensus 327 ~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~---~~~~~~-~i~~~~~s~~~~~l~~~~g~ 401 (507)
..+-..+ ...+ .++ .+.-.+++..+..+ +.-+.+-|+.+..... .+...+ ....+..+ +.++.. ..
T Consensus 247 ~~~gsye-t~~p-~~~s~v~Vs~~~~Yvadg---a~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yi--ad 317 (370)
T COG5276 247 TVFGSYE-TSNP-VSISTVPVSGEYAYVADG---AKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYI--AD 317 (370)
T ss_pred eEeeccc-cCCc-ccccceecccceeeeecc---ccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEe--cc
Confidence 2222222 2222 222 12222334444333 6666666665432111 111111 22222222 333433 22
Q ss_pred CCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 402 QDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 402 ~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
.+ ...+-+....+..-...+-...+.+.+.+-+.+.+.+...++-+.||+..
T Consensus 318 kn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 318 KN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred CC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 22 33444443332222222222223444444456678888889999999853
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.18 Score=43.74 Aligned_cols=177 Identities=10% Similarity=0.065 Sum_probs=106.7
Q ss_pred EEEEe-e-CCEEEEEecCC--eEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCee
Q psy8285 255 IAMCW-N-GNLLSCGTIGG--NILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQV 330 (507)
Q Consensus 255 ~~~~~-~-~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~ 330 (507)
..+.| + +.++-+.+.-| .|+.+|+.+++...........--..++...|.-+.++--++...+||..+. +.+.
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl---~~~~ 124 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTL---KKIG 124 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTT---EEEE
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccc---eEEE
Confidence 45777 4 55666666666 6889999988633232222233334555554433333334699999999876 6666
Q ss_pred eecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC------CCeEEEEECCCCCeEEEEeccCCC
Q psy8285 331 NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD------SQVTSILWSEQYRELVTSHGKQDC 404 (507)
Q Consensus 331 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------~~i~~~~~s~~~~~l~~~~g~~d~ 404 (507)
++. ..+.=+.++ .++..++.+.+ ...++++|..+.+....+... ..++-+.|- +|...|= --...
T Consensus 125 ~~~-y~~EGWGLt--~dg~~Li~SDG---S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyAN--VW~td 195 (264)
T PF05096_consen 125 TFP-YPGEGWGLT--SDGKRLIMSDG---SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYAN--VWQTD 195 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE-S---SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEE--ETTSS
T ss_pred EEe-cCCcceEEE--cCCCEEEEECC---ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEE--eCCCC
Confidence 665 334556676 46778888776 889999999888877766432 346667775 4443333 34566
Q ss_pred eEEEEeCCCccEEEEeec------------c---ccceeEEEECCCCCEEEEEe
Q psy8285 405 SLKMWEYPRLHLIEELKI------------H---QERILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 405 ~i~v~d~~~~~~~~~~~~------------~---~~~i~~~~~s~~~~~l~s~~ 443 (507)
.|...|..+|+.+..+.- + ..-.+.|+|.|....|...+
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 788889999988776521 1 24578999998766555444
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.076 Score=39.04 Aligned_cols=93 Identities=11% Similarity=0.174 Sum_probs=62.5
Q ss_pred eeeCCCC---EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE
Q psy8285 171 LDWGYHD---TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 171 ~~~s~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~ 247 (507)
.++..++ +++++.|..|++|+-. +....++ ..+.|+++.-... .+++.+ ..+|+|-+|+-. ..+...
T Consensus 8 ~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~----e~~~v~~L~~~~~-~~F~Y~-l~NGTVGvY~~~--~RlWRi 77 (111)
T PF14783_consen 8 FDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT----ETDKVTSLCSLGG-GRFAYA-LANGTVGVYDRS--QRLWRI 77 (111)
T ss_pred EecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe----cccceEEEEEcCC-CEEEEE-ecCCEEEEEeCc--ceeeee
Confidence 3444443 9999999999999854 3333333 4567888888776 567777 899999999853 333444
Q ss_pred eecCccEEEEEe-e-----CCEEEEEecCCeEE
Q psy8285 248 RTHMHQVIAMCW-N-----GNLLSCGTIGGNIL 274 (507)
Q Consensus 248 ~~~~~~v~~~~~-~-----~~~l~~~~~dg~i~ 274 (507)
+... .+.++.+ | -..|++|-.+|.|-
T Consensus 78 KSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 78 KSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 4333 3566665 3 23688888888774
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.17 Score=44.74 Aligned_cols=144 Identities=15% Similarity=0.067 Sum_probs=87.6
Q ss_pred ceEEEEEcCCCCEEEEEe--C--CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEe-C
Q psy8285 294 VVCGLKWSPNGRYLASGS--N--NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWN-S 368 (507)
Q Consensus 294 ~v~~~~~~~~~~~l~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d-~ 368 (507)
.+.+.+++++++.++... + ..++++.... ...... ....+....|++++ .+.+...+ +...+++. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~-----~~~~~~-~g~~l~~PS~d~~g-~~W~v~~~--~~~~~~~~~~ 95 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG-----PVRPVL-TGGSLTRPSWDPDG-WVWTVDDG--SGGVRVVRDS 95 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC-----cceeec-cCCccccccccCCC-CEEEEEcC--CCceEEEEec
Confidence 678899999999887766 4 4455554432 222221 23478889999996 55555443 55556653 3
Q ss_pred CCCCee-eeeecC--C-CeEEEEECCCCCeEEEEe-ccCCCeEEEEeCC---Cc------cEEEEeeccccceeEEEECC
Q psy8285 369 MNGKEK-CHVKTD--S-QVTSILWSEQYRELVTSH-GKQDCSLKMWEYP---RL------HLIEELKIHQERILSAVLSP 434 (507)
Q Consensus 369 ~~~~~~-~~~~~~--~-~i~~~~~s~~~~~l~~~~-g~~d~~i~v~d~~---~~------~~~~~~~~~~~~i~~~~~s~ 434 (507)
.+++.. ..+... . .|..+.+||||..++... ...++.|.+--+. .+ .++.........+.++.|.+
T Consensus 96 ~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 96 ASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred CCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 333322 222222 2 899999999999998853 1234667766442 22 11122223346789999999
Q ss_pred CCCEEEEEeCCC
Q psy8285 435 DQTCVAAASADE 446 (507)
Q Consensus 435 ~~~~l~s~~~dg 446 (507)
++.+++.+...+
T Consensus 176 ~~~L~V~~~~~~ 187 (253)
T PF10647_consen 176 DSTLVVLGRSAG 187 (253)
T ss_pred CCEEEEEeCCCC
Confidence 998777665443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.21 Score=43.23 Aligned_cols=236 Identities=11% Similarity=0.042 Sum_probs=136.4
Q ss_pred ceEEEEEccCCCeEEEEeCCCCc-EEEEeCCCceeEEEEeecCcc----EEEEEeeCCEEEEEecC-----CeEEEEECC
Q psy8285 210 YISCVAWKPRTTDLAVTNTCTEY-IDLWHEQEERLIQKLRTHMHQ----VIAMCWNGNLLSCGTIG-----GNILHYDVR 279 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~----v~~~~~~~~~l~~~~~d-----g~i~i~d~~ 279 (507)
....|+|+|..+.-++-+-.-|+ ..++|.+..+...++...+++ --.++.||.+|...-.| |.|-|||.+
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 45678888876544333245554 678898887776665432222 12334478888776543 789999998
Q ss_pred CCCcCceeeecCCCceEEEEEcCCCCEEEEEeCC-------------------cEEEEEcCCCCCCCCeeeec--CCCCC
Q psy8285 280 THSDYPTAITREGDVVCGLKWSPNGRYLASGSNN-------------------TVKIWDFRQLDAKRPQVNNQ--CHLSA 338 (507)
Q Consensus 280 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~-------------------~i~i~d~~~~~~~~~~~~~~--~~~~~ 338 (507)
..-.....+..|.-.-..+.+.+||+.++.++.| .+.+.|..+++..+ ..++. .+...
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie-kh~Lp~~l~~lS 227 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE-KHTLPASLRQLS 227 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh-hccCchhhhhcc
Confidence 6554555677777778889999999998876521 12223323321111 01111 24456
Q ss_pred eeEEEEccCCCcEEEEEcc---CCCCeEEEEeCCCCCeeeeeecC--------CCeEEEEECCCCCeEEEEeccCCCeEE
Q psy8285 339 VKAIAWCPWEPTLLATGGG---ICDQTVRLWNSMNGKEKCHVKTD--------SQVTSILWSEQYRELVTSHGKQDCSLK 407 (507)
Q Consensus 339 v~~~~~~~~~~~~~~~~~~---~~d~~i~i~d~~~~~~~~~~~~~--------~~i~~~~~s~~~~~l~~~~g~~d~~i~ 407 (507)
+..++..+||. +++.+.- ..|.--.+=-...++++..+... ..+-+++.+.+...++.+ .-..+...
T Consensus 228 iRHld~g~dgt-vwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lT-SP~GN~~v 305 (366)
T COG3490 228 IRHLDIGRDGT-VWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALT-SPRGNRAV 305 (366)
T ss_pred eeeeeeCCCCc-EEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEe-cCCCCeEE
Confidence 78888888774 3332210 00111111122334444444322 357788888877777775 34566789
Q ss_pred EEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 408 MWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 408 v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
+||..++..+..-.- .....++- ...=++..+.+|.+.++.
T Consensus 306 i~da~tG~vv~~a~l--~daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 306 IWDAATGAVVSEAAL--PDAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EEEcCCCcEEecccc--ccccccee--ccCceEEecCCceEEecc
Confidence 999999988754331 11222332 333356667788888874
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.25 Score=43.61 Aligned_cols=154 Identities=14% Similarity=0.153 Sum_probs=88.1
Q ss_pred ceEEEEEccCCCeEEEEeCCCC--cEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEE-CCCCCcC
Q psy8285 210 YISCVAWKPRTTDLAVTNTCTE--YIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYD-VRTHSDY 284 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d-~~~~~~~ 284 (507)
.+.+.+++++++.+++....++ .++++. .+....... ....+...+| ++...+....+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 6899999999998888732233 455554 333333222 2236667777 555665655555556553 2333222
Q ss_pred ceeeecC--CCceEEEEEcCCCCEEEEEe----CCcEEEEEcCCCCCC------CCeeeecCCCCCeeEEEEccCCCcEE
Q psy8285 285 PTAITRE--GDVVCGLKWSPNGRYLASGS----NNTVKIWDFRQLDAK------RPQVNNQCHLSAVKAIAWCPWEPTLL 352 (507)
Q Consensus 285 ~~~~~~~--~~~v~~~~~~~~~~~l~~~~----d~~i~i~d~~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~ 352 (507)
....... ...|..+.+||||..++... ++.|.+--+...... .+..........+..+.|.+++. |+
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~-L~ 180 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST-LV 180 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE-EE
Confidence 2222211 12899999999999887765 477877765533221 12222223356889999999884 54
Q ss_pred EEEccCCCCeEEE-EeC
Q psy8285 353 ATGGGICDQTVRL-WNS 368 (507)
Q Consensus 353 ~~~~~~~d~~i~i-~d~ 368 (507)
+.+.. .+..+.. ...
T Consensus 181 V~~~~-~~~~~~~~v~~ 196 (253)
T PF10647_consen 181 VLGRS-AGGPVVRLVSV 196 (253)
T ss_pred EEeCC-CCCceeEEEEc
Confidence 44432 2443433 443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.027 Score=52.71 Aligned_cols=145 Identities=10% Similarity=0.144 Sum_probs=98.4
Q ss_pred EccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--e-------CCEEEEEecCCeEEEEECCCCCc-Cc
Q psy8285 216 WKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--N-------GNLLSCGTIGGNILHYDVRTHSD-YP 285 (507)
Q Consensus 216 ~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~-------~~~l~~~~~dg~i~i~d~~~~~~-~~ 285 (507)
...+...|+..+.....++-.|+..|+.+.....+.. |.-+.+ + ...-+.|-.+..|.-||++-... ..
T Consensus 341 ~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 341 HRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred hccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 3344555665545666788889999999999887776 443443 1 22334566788899999985442 11
Q ss_pred eeeecC----CCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC
Q psy8285 286 TAITRE----GDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD 360 (507)
Q Consensus 286 ~~~~~~----~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d 360 (507)
.....| +....|.+-..+| ++++|+ +|.|++||--.. +....+++-..+|..+..+.+|+.+++++ +
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~---~AKTAlPgLG~~I~hVdvtadGKwil~Tc----~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGR---RAKTALPGLGDAIKHVDVTADGKWILATC----K 491 (644)
T ss_pred eeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhh---hhhhcccccCCceeeEEeeccCcEEEEec----c
Confidence 122222 3345666666565 677777 699999997433 44455677888999999999999888877 6
Q ss_pred CeEEEEeCC
Q psy8285 361 QTVRLWNSM 369 (507)
Q Consensus 361 ~~i~i~d~~ 369 (507)
..+.+.++.
T Consensus 492 tyLlLi~t~ 500 (644)
T KOG2395|consen 492 TYLLLIDTL 500 (644)
T ss_pred cEEEEEEEe
Confidence 777777754
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.64 Score=47.49 Aligned_cols=267 Identities=10% Similarity=0.104 Sum_probs=148.1
Q ss_pred EEEEEcCCeEEEE--ECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEE
Q psy8285 178 TLAVALDTSVYTW--NTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVI 255 (507)
Q Consensus 178 ~~~~~~~~~i~iw--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 255 (507)
++++..||.+.-+ |..++.........- ...++.=-.|+..++.-+.+ ..|.-..+|-.+ ++....-- .-..+.
T Consensus 598 LlvalgdG~l~~fv~d~~tg~lsd~Kk~~l-Gt~P~~Lr~f~sk~~t~vfa-~sdrP~viY~~n-~kLv~spl-s~kev~ 673 (1096)
T KOG1897|consen 598 LLVALGDGALLYFVLDINTGQLSDRKKVTL-GTQPISLRTFSSKSRTAVFA-LSDRPTVIYSSN-GKLVYSPL-SLKEVN 673 (1096)
T ss_pred EEEEcCCceEEEEEEEcccceEcccccccc-CCCCcEEEEEeeCCceEEEE-eCCCCEEEEecC-CcEEEecc-chHHhh
Confidence 6666688887655 444554433221111 45666666776665544444 466666666543 33322111 111222
Q ss_pred EEE-ee----CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC---------------CcE
Q psy8285 256 AMC-WN----GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN---------------NTV 315 (507)
Q Consensus 256 ~~~-~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d---------------~~i 315 (507)
.++ |+ +..++.+. .+.+.+..++.-++.......-....+.+++.+....+++.++ ..+
T Consensus 674 ~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l 752 (1096)
T KOG1897|consen 674 HMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFL 752 (1096)
T ss_pred hhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEE
Confidence 222 21 34455554 4566676666433222111233344555666664444444331 235
Q ss_pred EEEEcCCCCCCCCeeeec--C--CCCCeeEEEEccCCCcEEEEEcc--------CCCCeEEEEeCCCCCeee---eeecC
Q psy8285 316 KIWDFRQLDAKRPQVNNQ--C--HLSAVKAIAWCPWEPTLLATGGG--------ICDQTVRLWNSMNGKEKC---HVKTD 380 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~--~--~~~~v~~~~~~~~~~~~~~~~~~--------~~d~~i~i~d~~~~~~~~---~~~~~ 380 (507)
+++|-++. +.+...+ . ....+.+..|..|.+..+++|.+ ...|.|.+|....++.+. .....
T Consensus 753 ~vlD~nTf---~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~ 829 (1096)
T KOG1897|consen 753 RVLDQNTF---EVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK 829 (1096)
T ss_pred EEecCCce---eEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec
Confidence 56665543 2221111 0 11235556688775566666642 125788888876633333 33333
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
+.+.++..- +|+++|. -+..|++|++.+.+.++.-..+..++..+...-.|..++.|.--+++.+-.....+
T Consensus 830 Gav~aL~~f-ngkllA~----In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 830 GAVYALVEF-NGKLLAG----INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred cceeehhhh-CCeEEEe----cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 555554432 5677766 35689999999987777777788899999998899999999988888877666544
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.13 Score=47.84 Aligned_cols=172 Identities=9% Similarity=0.050 Sum_probs=84.7
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCC--------------------CCcEEEEeCCCcee
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTC--------------------TEYIDLWHEQEERL 243 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--------------------dg~i~iwd~~~~~~ 243 (507)
-|.+.++|-++.+.....+........-..+-|.|..+.++++ .. ..++.+||+.+.+.
T Consensus 156 ~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSS-eWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 156 PGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISS-EWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp --EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE--B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred CCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEe-ccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 3578888888777665555432134445677888887777775 32 45799999999999
Q ss_pred EEEEeecCc--cEEEEEe--e---CCEEEEEecCCeEEEEEC-CCCCcC---ceee-----------------ecCCCce
Q psy8285 244 IQKLRTHMH--QVIAMCW--N---GNLLSCGTIGGNILHYDV-RTHSDY---PTAI-----------------TREGDVV 295 (507)
Q Consensus 244 ~~~~~~~~~--~v~~~~~--~---~~~l~~~~~dg~i~i~d~-~~~~~~---~~~~-----------------~~~~~~v 295 (507)
++++.-... ....+.| + ..-++.+--..+|..|-- +.++-. ...+ ..-..-|
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 998875432 3556777 2 223333334445544433 222100 0000 0113457
Q ss_pred EEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCeeeec----------------CCCCCeeEEEEccCCCcEEEEEc
Q psy8285 296 CGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQVNNQ----------------CHLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 296 ~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
+.+..|.|.++|...+ .|.|+.||+......+...+.. .-.+...-+..|-||+++.++.+
T Consensus 315 tDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 315 TDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp --EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred EeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 8999999999999998 5999999999874444333221 01223467888889988888764
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.77 Score=47.16 Aligned_cols=240 Identities=10% Similarity=0.012 Sum_probs=121.3
Q ss_pred CceEEEEEccCCCeEEEEeCCCC----cEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecC------CeEEEE
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTE----YIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIG------GNILHY 276 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d------g~i~i~ 276 (507)
-.+..+.|+|++++|+.+.+.+| .+++.|+.+++.+........ ..++| |++.|+....+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 34677899999999998744444 688999988764322211211 45788 66655554432 367888
Q ss_pred ECCCCCc-CceeeecCCCceE-EEEEcCCCCEEEEEe----CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCc
Q psy8285 277 DVRTHSD-YPTAITREGDVVC-GLKWSPNGRYLASGS----NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPT 350 (507)
Q Consensus 277 d~~~~~~-~~~~~~~~~~~v~-~~~~~~~~~~l~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 350 (507)
++.+... ....+........ ....+.++++++..+ ++.+.+++...... .....+....+....+. +..+ .
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~-~ 281 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADA-EPFVFLPRRKDHEYSLD-HYQH-R 281 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCC-CceEEEECCCCCEEEEE-eCCC-E
Confidence 8887732 2223332223333 333444888765543 27899998543211 22222221222223332 2223 4
Q ss_pred EEEEEc-cCCCCeEEEEeCCC-CCeeeeeecC--CCeEEEEECCCCCeEEEEeccCCCeE--EEEeCCCccEEEEee-cc
Q psy8285 351 LLATGG-GICDQTVRLWNSMN-GKEKCHVKTD--SQVTSILWSEQYRELVTSHGKQDCSL--KMWEYPRLHLIEELK-IH 423 (507)
Q Consensus 351 ~~~~~~-~~~d~~i~i~d~~~-~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~g~~d~~i--~v~d~~~~~~~~~~~-~~ 423 (507)
+++... +.....|...++.. ++....+... ..+..+.+. +++|+.. ...++.- .+++...+ .+..+. ..
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~-~~~~g~~~l~~~~~~~~-~~~~l~~~~ 357 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVE-ERQRGLTSLRQINRKTR-EVIGIAFDD 357 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEE-EEeCCEEEEEEEcCCCC-ceEEecCCC
Confidence 444332 21233455555552 2222233332 357777777 4455543 4566654 44554333 333333 22
Q ss_pred ccceeEEEEC--CCCC-EEEEEeC---CCcEEEEecCCCC
Q psy8285 424 QERILSAVLS--PDQT-CVAAASA---DETISIWNCFPRD 457 (507)
Q Consensus 424 ~~~i~~~~~s--~~~~-~l~s~~~---dg~i~iw~~~~~~ 457 (507)
...+..+.++ +++. ++++.++ -+.+..+|+.+++
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 358 PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 2223334444 3433 4444332 3678888887654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.088 Score=52.51 Aligned_cols=218 Identities=10% Similarity=0.106 Sum_probs=105.1
Q ss_pred cEEEEeCCCceeEE--EEeecCccEEEEEeeCCEEEEEecC------CeEEEEECCCCCcC-ceeeecCCCceEEEEEcC
Q psy8285 232 YIDLWHEQEERLIQ--KLRTHMHQVIAMCWNGNLLSCGTIG------GNILHYDVRTHSDY-PTAITREGDVVCGLKWSP 302 (507)
Q Consensus 232 ~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~ 302 (507)
.+..||..+.+-.. .+............++...+.|+.+ ..+..||..+.... ...+....... +++ .-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EE
Confidence 56778887764322 1211111122333477888888754 34778888765311 11111111111 222 22
Q ss_pred CCCEEEEEe-C-----CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC-----------------
Q psy8285 303 NGRYLASGS-N-----NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC----------------- 359 (507)
Q Consensus 303 ~~~~l~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----------------- 359 (507)
++++.+.|+ + ..+..||..+..- ..+..+.........+.. + ..+++.|+...
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W-~~~~~mp~~r~~~~~~~~--~-g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKW-KMLPDMPIALSSYGMCVL--D-QYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeE-EECCCCCcccccccEEEE--C-CEEEEEeCCCcccccccccccccccccc
Confidence 577777776 3 2488899876411 111111111111112222 3 36777775311
Q ss_pred ----CCeEEEEeCCCCCee--eeeecCCCeEEEEECCCCCeEEEEeccCC------CeEEEEeCCC---ccEEEEeeccc
Q psy8285 360 ----DQTVRLWNSMNGKEK--CHVKTDSQVTSILWSEQYRELVTSHGKQD------CSLKMWEYPR---LHLIEELKIHQ 424 (507)
Q Consensus 360 ----d~~i~i~d~~~~~~~--~~~~~~~~i~~~~~s~~~~~l~~~~g~~d------~~i~v~d~~~---~~~~~~~~~~~ 424 (507)
-..+..||..+.+-. ..+.....-.+++ .-+++..++ |+.+ ..+..||..+ .+.+..+....
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~--GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVV--CDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEE--eCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 135778887765422 2221111111111 224554455 4332 2467898775 34444444333
Q ss_pred cceeEEEECCCCCEEEEEeCCC--cEEEEecCCCCccc
Q psy8285 425 ERILSAVLSPDQTCVAAASADE--TISIWNCFPRDKKR 460 (507)
Q Consensus 425 ~~i~~~~~s~~~~~l~s~~~dg--~i~iw~~~~~~~~~ 460 (507)
.....+.+ +++..++|+.|+ .+..||..+.+-..
T Consensus 504 ~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 504 SALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred ccceeEEE--CCEEEEEeeecceeehhhcCcccccccc
Confidence 33333333 778888899888 66667766655443
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.025 Score=57.50 Aligned_cols=93 Identities=12% Similarity=0.175 Sum_probs=70.8
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAM 257 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 257 (507)
+++++..|.+-..|... ...+...... ..++|++++|+.+|..++.| -.+|.|.+||+.+++.++.+..|..+...+
T Consensus 102 ivi~Ts~ghvl~~d~~~-nL~~~~~ne~-v~~~Vtsvafn~dg~~l~~G-~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTG-NLGPLHQNER-VQGPVTSVAFNQDGSLLLAG-LGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred EEEEcCchhhhhhhhhc-ccchhhcCCc-cCCcceeeEecCCCceeccc-cCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 45556778888888754 2222233333 57899999999999999998 999999999999999999998888777666
Q ss_pred Ee-----eCCEEEEEecCCeE
Q psy8285 258 CW-----NGNLLSCGTIGGNI 273 (507)
Q Consensus 258 ~~-----~~~~l~~~~~dg~i 273 (507)
-+ ++..+.++...|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gsf 199 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGSF 199 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCce
Confidence 55 35568888888863
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.25 Score=49.33 Aligned_cols=181 Identities=16% Similarity=0.129 Sum_probs=99.6
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC------CcEEEEeCCCceeEE--EEeecCccEEE
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT------EYIDLWHEQEERLIQ--KLRTHMHQVIA 256 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~ 256 (507)
..+..||..+++......++. ...-.+++... +...++| +.| ..+..||..+.+-.. .+.........
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~--~r~~~~~~~~~-~~lYv~G-G~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v 376 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPS--PRCRVGVAVLN-GKLYVVG-GYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGV 376 (571)
T ss_pred ceeEEecCCcCcEeecCCCCc--ccccccEEEEC-CEEEEEc-cccCCCcccceEEEecCCCCceeccCCccCcccccee
Confidence 478899999988777766653 33344555543 4445555 677 367888887766332 22223333344
Q ss_pred EEeeCCEEEEEecCCe-----EEEEECCCCCcCceeeecCCCceEEEE-EcCCCCEEEEEe-C------CcEEEEEcCCC
Q psy8285 257 MCWNGNLLSCGTIGGN-----ILHYDVRTHSDYPTAITREGDVVCGLK-WSPNGRYLASGS-N------NTVKIWDFRQL 323 (507)
Q Consensus 257 ~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~-d------~~i~i~d~~~~ 323 (507)
...+|.+.|+|+.||. +..||..+.+-. ............. -.-+|++.++|+ + ..+..||..+.
T Consensus 377 ~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~--~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 377 AVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT--PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred EEECCEEEEEeccccccccccEEEecCCCCccc--ccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC
Confidence 4458999999999974 778888876521 1111111222222 122677777776 3 35788988875
Q ss_pred CCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC---CCeEEEEeCCCCCeee
Q psy8285 324 DAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC---DQTVRLWNSMNGKEKC 375 (507)
Q Consensus 324 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~ 375 (507)
.. ..+..+........ ++.- +..+++.|+-+. ..++..||..+.+-..
T Consensus 455 ~W-~~~~~M~~~R~~~g-~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 455 TW-TLIAPMNTRRSGFG-VAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred ce-eecCCcccccccce-EEEE--CCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 21 11111111111111 2222 336777776311 1247788887766433
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.13 Score=51.35 Aligned_cols=216 Identities=7% Similarity=-0.025 Sum_probs=106.0
Q ss_pred eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC------CcEEEEeCCCceeEE--EEeecCccEEEE
Q psy8285 186 SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT------EYIDLWHEQEERLIQ--KLRTHMHQVIAM 257 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~~ 257 (507)
.+..||..+++......++. .... .+++. -++...++| +.+ ..+..||..+..-.. .+..........
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~-~r~~-~~~a~-l~~~IYviG-G~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPN-HIIN-YASAI-VDNEIIIAG-GYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCeEEECCCCCc-cccc-eEEEE-ECCEEEEEc-CCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE
Confidence 57789998887766555532 2111 22222 245555566 432 347788987764321 111122223344
Q ss_pred EeeCCEEEEEecCC-----eEEEEECCCCCcCc-eeeecCCCceEEEEEcCCCCEEEEEe-C------------------
Q psy8285 258 CWNGNLLSCGTIGG-----NILHYDVRTHSDYP-TAITREGDVVCGLKWSPNGRYLASGS-N------------------ 312 (507)
Q Consensus 258 ~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-d------------------ 312 (507)
..+++..+.|+.++ .+..||..+.+-.. ..+.........+. -++++.+.|+ +
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccc
Confidence 55888888888764 47889988653111 11111111111122 2577777766 3
Q ss_pred -----CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC----CCeEEEEeCCC-CC--eeeeeecC
Q psy8285 313 -----NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC----DQTVRLWNSMN-GK--EKCHVKTD 380 (507)
Q Consensus 313 -----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----d~~i~i~d~~~-~~--~~~~~~~~ 380 (507)
..+..||.++..- ..+..+....... +++.. ++ .+++.|+.+. ...+..||..+ .+ .+..+...
T Consensus 427 ~~~~~~~ve~YDP~td~W-~~v~~m~~~r~~~-~~~~~-~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~ 502 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIW-ETLPNFWTGTIRP-GVVSH-KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR 502 (557)
T ss_pred cccccceEEEECCCCCeE-eecCCCCcccccC-cEEEE-CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc
Confidence 2477788776421 1111111111111 12221 33 6777775311 12467899886 43 22333322
Q ss_pred C-CeEEEEECCCCCeEEEEeccCCC--eEEEEeCCCcc
Q psy8285 381 S-QVTSILWSEQYRELVTSHGKQDC--SLKMWEYPRLH 415 (507)
Q Consensus 381 ~-~i~~~~~s~~~~~l~~~~g~~d~--~i~v~d~~~~~ 415 (507)
. ....+.+ +++..++ |+.++ .+..||..+.+
T Consensus 503 r~~~~~~~~--~~~iyv~--Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 503 LSALHTILH--DNTIMML--HCYESYMLQDTFNVYTYE 536 (557)
T ss_pred cccceeEEE--CCEEEEE--eeecceeehhhcCccccc
Confidence 1 1222222 5555555 66677 66777766543
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0029 Score=52.43 Aligned_cols=142 Identities=14% Similarity=0.123 Sum_probs=80.8
Q ss_pred EEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC-CeeeeeecC-CCe
Q psy8285 306 YLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG-KEKCHVKTD-SQV 383 (507)
Q Consensus 306 ~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~-~~i 383 (507)
++++..++.|.-++++..... ...-.-+.....-+.+ + .-++++.. +|.|.+|..... ......... ..+
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s--~rse~~~~e~~~v~~~---~-~~~~vG~~--dg~v~~~n~n~~g~~~d~~~s~~e~i 104 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKES--CRSERFIDEGQRVVTA---S-AKLMVGTS--DGAVYVFNWNLEGAHSDRVCSGEESI 104 (238)
T ss_pred hccccCCcccccchhhhhhhh--hhhhhhhhcceeeccc---C-ceEEeecc--cceEEEecCCccchHHHhhhcccccc
Confidence 344455688888877753110 0111111111111222 2 23444444 999999987521 111111111 222
Q ss_pred E-EEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccc-cceeEEEECCCCCEEEEE--eCCCcEEEEecCCCC
Q psy8285 384 T-SILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQ-ERILSAVLSPDQTCVAAA--SADETISIWNCFPRD 457 (507)
Q Consensus 384 ~-~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~s~--~~dg~i~iw~~~~~~ 457 (507)
. .+.--.++.+..+ +..+|.|+.|++.-.+.+.....|. .++..+..+..+++++.+ |.|..++.|++..-.
T Consensus 105 ~~~Ip~~~~~~~~c~--~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 105 DLGIPNGRDSSLGCV--GAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred eeccccccccceeEE--eccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 2 2222334445556 7899999999998888877777676 566666666677777777 788888888887543
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.32 Score=40.88 Aligned_cols=134 Identities=11% Similarity=0.128 Sum_probs=87.4
Q ss_pred CCceEEEEEcCCCCEEEEEe-C-C--------cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC
Q psy8285 292 GDVVCGLKWSPNGRYLASGS-N-N--------TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ 361 (507)
Q Consensus 292 ~~~v~~~~~~~~~~~l~~~~-d-~--------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~ 361 (507)
+.+.+.-..+|+|++++... | + .++.|-.. ..+..+...-+--+.++|+.+.+.+....+ .+-
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-----h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs--ln~ 180 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-----HQVELIWNCVGISNGLAWDSDAKKFYYIDS--LNY 180 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-----CCceeeehhccCCccccccccCcEEEEEcc--Cce
Confidence 34566677889999955432 3 2 23333222 222222223334467899988877777765 488
Q ss_pred eEEEEe--CCCCC-----eeeeeecC-----CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeE
Q psy8285 362 TVRLWN--SMNGK-----EKCHVKTD-----SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILS 429 (507)
Q Consensus 362 ~i~i~d--~~~~~-----~~~~~~~~-----~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~ 429 (507)
+|.-|| ..+|. .+..++.. -..-.+++..+|+..++ .-..++|..+|..+|+.+.+++-....|++
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va--~~ng~~V~~~dp~tGK~L~eiklPt~qits 258 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVA--TFNGGTVQKVDPTTGKILLEIKLPTPQITS 258 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEE--EecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence 887787 55553 23333221 12344566677887777 456789999999999999999988899999
Q ss_pred EEECC
Q psy8285 430 AVLSP 434 (507)
Q Consensus 430 ~~~s~ 434 (507)
++|--
T Consensus 259 ccFgG 263 (310)
T KOG4499|consen 259 CCFGG 263 (310)
T ss_pred EEecC
Confidence 99964
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=1.3 Score=45.55 Aligned_cols=236 Identities=10% Similarity=0.005 Sum_probs=120.6
Q ss_pred cceeeeeeCCCC-EEEEEcC------CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC-----CcE
Q psy8285 166 FYTSGLDWGYHD-TLAVALD------TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT-----EYI 233 (507)
Q Consensus 166 ~~i~~~~~s~~~-~~~~~~~------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~i 233 (507)
+.+..+.||||+ +++.+.| -.|++.|+.+++.... .+. .. . ..++|.+|++.|+.+...+ ..|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~i~--~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v 201 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-LLD--NV-E-PSFVWANDSWTFYYVRKHPVTLLPYQV 201 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-ccc--Cc-c-eEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence 457889999998 6665532 2688999988763211 111 11 1 5699999998877762222 367
Q ss_pred EEEeCCCc--eeEEEEeecCccEEEEEe---eCCEEEEEecC---CeEEEEECCCCCc-CceeeecCCCceEEEEEcCCC
Q psy8285 234 DLWHEQEE--RLIQKLRTHMHQVIAMCW---NGNLLSCGTIG---GNILHYDVRTHSD-YPTAITREGDVVCGLKWSPNG 304 (507)
Q Consensus 234 ~iwd~~~~--~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d---g~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~ 304 (507)
+.+++.++ +....+........-..+ ++++++..+.. +.+.+++...... ....+.........+. +..+
T Consensus 202 ~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 280 (686)
T PRK10115 202 WRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQH 280 (686)
T ss_pred EEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCC
Confidence 88888877 333344433333331122 66665554433 4688888543211 1222222222223332 3333
Q ss_pred CEEEEEe-C-CcEEEE--EcCCCCCCCCeeeecCC-C-CCeeEEEEccCCCcEEEEEccCCCCe--EEEEeCCCCCeeee
Q psy8285 305 RYLASGS-N-NTVKIW--DFRQLDAKRPQVNNQCH-L-SAVKAIAWCPWEPTLLATGGGICDQT--VRLWNSMNGKEKCH 376 (507)
Q Consensus 305 ~~l~~~~-d-~~i~i~--d~~~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~~~~~~~~~d~~--i~i~d~~~~~~~~~ 376 (507)
.+++... + ...+|. ++... .....+..+ . ..+..+.+. ++.++++... ++. +.+++...+ .+..
T Consensus 281 ~ly~~tn~~~~~~~l~~~~~~~~---~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~--~g~~~l~~~~~~~~-~~~~ 352 (686)
T PRK10115 281 RFYLRSNRHGKNFGLYRTRVRDE---QQWEELIPPRENIMLEGFTLF--TDWLVVEERQ--RGLTSLRQINRKTR-EVIG 352 (686)
T ss_pred EEEEEEcCCCCCceEEEecCCCc---ccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe--CCEEEEEEEcCCCC-ceEE
Confidence 4444333 2 333444 44321 222333334 2 367778887 3467666654 554 555565433 3333
Q ss_pred ee--cCCCeEEEEEC--CCCCeEEEE--eccCCCeEEEEeCCCcc
Q psy8285 377 VK--TDSQVTSILWS--EQYRELVTS--HGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 377 ~~--~~~~i~~~~~s--~~~~~l~~~--~g~~d~~i~v~d~~~~~ 415 (507)
+. ....+..+.++ +++..++.. +-..-+.+..+|..+++
T Consensus 353 l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 353 IAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred ecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 33 12233334444 444434332 12345688899987764
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.21 Score=47.82 Aligned_cols=150 Identities=19% Similarity=0.381 Sum_probs=88.0
Q ss_pred CccEEEEEe-eCCEEEEEe---cCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCC-----CEEEEEeCCcEEEEEcC
Q psy8285 251 MHQVIAMCW-NGNLLSCGT---IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNG-----RYLASGSNNTVKIWDFR 321 (507)
Q Consensus 251 ~~~v~~~~~-~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~d~~i~i~d~~ 321 (507)
-.++..++| ||+.++-.. .+|.+++=| ....+.-..|..+.|.|-+ .+||+-....|.+|.+.
T Consensus 19 iHPvhGlaWTDGkqVvLT~L~l~~gE~kfGd--------s~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDLQLHNGEPKFGD--------SKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred hccccceEecCCCEEEEEeeeeeCCccccCC--------ccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 357889999 787665443 223322211 1122344568999999843 46666667999999986
Q ss_pred CC--CCCCCeeeecCC-----CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC--CCeeeeeecCCCeEEEEECCCC
Q psy8285 322 QL--DAKRPQVNNQCH-----LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN--GKEKCHVKTDSQVTSILWSEQY 392 (507)
Q Consensus 322 ~~--~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~~~~~~~~~~i~~~~~s~~~ 392 (507)
.. +..+.+.....+ .--...+.|+|...-+.+-.. ...-.+++++. .+....++..+.|.|.+|.+||
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~---~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG 167 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA---RDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDG 167 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec---CceeEeeeeeeCCceEEEeccCCceEEEEEecCcC
Confidence 32 111222211111 112346789998754433333 33334455543 3344456667899999999999
Q ss_pred CeEEEEeccCCCeEEEEeCC
Q psy8285 393 RELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 393 ~~l~~~~g~~d~~i~v~d~~ 412 (507)
+.|+++.|+ .=.-+|||-.
T Consensus 168 ~RLVVAvGS-sLHSyiWd~~ 186 (671)
T PF15390_consen 168 QRLVVAVGS-SLHSYIWDSA 186 (671)
T ss_pred CEEEEEeCC-eEEEEEecCc
Confidence 999987544 3356788743
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.83 Score=42.27 Aligned_cols=233 Identities=14% Similarity=0.114 Sum_probs=117.2
Q ss_pred ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee---EEEEe----ecCccEEEEEeeC-----CEEEEEecC-------
Q psy8285 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL---IQKLR----THMHQVIAMCWNG-----NLLSCGTIG------- 270 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~---~~~~~----~~~~~v~~~~~~~-----~~l~~~~~d------- 270 (507)
..+.|+|.|+|+.+++- ..|.|++++ ..+.. +..+. ........++++. .+|......
T Consensus 3 ~P~~~a~~pdG~l~v~e--~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAE--RSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTSCEEEEE--TTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCCcEEEEe--CCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 35789999998776654 699999999 44443 22221 2445678888843 444444331
Q ss_pred --CeEEEEECCCCC-------cCceeeec---CCCceEEEEEcCCCCEEEEEeC-Cc-----------EEEEEcCCCCCC
Q psy8285 271 --GNILHYDVRTHS-------DYPTAITR---EGDVVCGLKWSPNGRYLASGSN-NT-----------VKIWDFRQLDAK 326 (507)
Q Consensus 271 --g~i~i~d~~~~~-------~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~d-~~-----------i~i~d~~~~~~~ 326 (507)
..|.-|...... ........ ....-..+.|.|||.+.++.++ +. =+|+.+......
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~ 159 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcC
Confidence 234445444331 01111121 2234567999999987776654 22 122222211000
Q ss_pred ------------CCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC----------------------
Q psy8285 327 ------------RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK---------------------- 372 (507)
Q Consensus 327 ------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---------------------- 372 (507)
....--.++. ....++|+|....++++-.+ .+..=.|--+..+.
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G-~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNG-PDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE--SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccC-CCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 0000111222 34589999984466665433 12222222222211
Q ss_pred -------eeeeeecCCCeEEEEECCC-------CCeEEEEeccCCCeEEEEeCCCccEEE---E-eeccccceeEEEECC
Q psy8285 373 -------EKCHVKTDSQVTSILWSEQ-------YRELVTSHGKQDCSLKMWEYPRLHLIE---E-LKIHQERILSAVLSP 434 (507)
Q Consensus 373 -------~~~~~~~~~~i~~~~~s~~-------~~~l~~~~g~~d~~i~v~d~~~~~~~~---~-~~~~~~~i~~~~~s~ 434 (507)
+...+..+..+..+.|... |.++++ .-..+.|....+.....+. . +.....++..+++.|
T Consensus 238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p 315 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVA--DYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP 315 (331)
T ss_dssp S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEE--ETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred CCCCcCccceeecCccccCceEEECCccCccccCcEEEe--cCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence 2222333445666666543 445555 4446678887776443322 2 223444799999999
Q ss_pred CCCEEEEEeCCCcEE
Q psy8285 435 DQTCVAAASADETIS 449 (507)
Q Consensus 435 ~~~~l~s~~~dg~i~ 449 (507)
||.++++.+.+|.|+
T Consensus 316 DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDSDGKIY 330 (331)
T ss_dssp TSEEEEEE-TTTTEE
T ss_pred CCeEEEEECCCCeEe
Confidence 999988888888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.016 Score=35.29 Aligned_cols=30 Identities=13% Similarity=0.287 Sum_probs=28.0
Q ss_pred ccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 424 QERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 424 ~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
...|..++|+|...+||.++.+|.|.++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 456899999999999999999999999998
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.74 Score=46.04 Aligned_cols=226 Identities=16% Similarity=0.176 Sum_probs=113.4
Q ss_pred CCeEEEEeCCC------CcEEEEeCCCceeEEE--EeecCccEEEEEeeCCEEEEEecC-C-----eEEEEECCCCCcCc
Q psy8285 220 TTDLAVTNTCT------EYIDLWHEQEERLIQK--LRTHMHQVIAMCWNGNLLSCGTIG-G-----NILHYDVRTHSDYP 285 (507)
Q Consensus 220 ~~~l~~~~~~d------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~d-g-----~i~i~d~~~~~~~~ 285 (507)
+..+++| +.+ ..+..||..+++.... +............++.+.++|+.+ | .+..||.++.+-..
T Consensus 285 ~~l~~vG-G~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~ 363 (571)
T KOG4441|consen 285 GKLVAVG-GYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP 363 (571)
T ss_pred CeEEEEC-CCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec
Confidence 4455555 444 4688899887643322 222222233333378889999988 3 57788888765211
Q ss_pred -eeeecCCCceEEEEEcCCCCEEEEEe-C-----CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccC
Q psy8285 286 -TAITREGDVVCGLKWSPNGRYLASGS-N-----NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGI 358 (507)
Q Consensus 286 -~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 358 (507)
..+........ ++. -+|.+.++|+ | ..+..||.++..- ..+.. ............-+..++++|+..
T Consensus 364 ~a~M~~~R~~~~-v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W-~~va~---m~~~r~~~gv~~~~g~iYi~GG~~ 437 (571)
T KOG4441|consen 364 VAPMNTKRSDFG-VAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKW-TPVAP---MLTRRSGHGVAVLGGKLYIIGGGD 437 (571)
T ss_pred cCCccCccccce-eEE-ECCEEEEEeccccccccccEEEecCCCCcc-cccCC---CCcceeeeEEEEECCEEEEEcCcC
Confidence 11111111111 111 2567777776 4 3588888876521 11111 111233333333344777777632
Q ss_pred CC----CeEEEEeCCCCCeee--eeecCCCeEEEEECCCCCeEEEEeccCCC-----eEEEEeCCCcc--EEEEeecccc
Q psy8285 359 CD----QTVRLWNSMNGKEKC--HVKTDSQVTSILWSEQYRELVTSHGKQDC-----SLKMWEYPRLH--LIEELKIHQE 425 (507)
Q Consensus 359 ~d----~~i~i~d~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~g~~d~-----~i~v~d~~~~~--~~~~~~~~~~ 425 (507)
.. .++..||..+++-.. .+.....-..++. -++...++ |+.|+ +|..||..+.+ .+..+.....
T Consensus 438 ~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvv--GG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs 514 (571)
T KOG4441|consen 438 GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVV--GGFDGTSALSSVERYDPETNQWTMVAPMTSPRS 514 (571)
T ss_pred CCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEE--CCccCCCccceEEEEcCCCCceeEcccCccccc
Confidence 11 468889988765322 2222211112222 24445555 55555 37778876643 2322332233
Q ss_pred ceeEEEECCCCCEEEEEeCCC-----cEEEEecCCCC
Q psy8285 426 RILSAVLSPDQTCVAAASADE-----TISIWNCFPRD 457 (507)
Q Consensus 426 ~i~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~~ 457 (507)
.+....+ ++...+.|+.|| +|..||..+.+
T Consensus 515 ~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 515 AVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred cccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence 2222222 566777888775 45666655443
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.014 Score=59.18 Aligned_cols=98 Identities=13% Similarity=0.270 Sum_probs=70.3
Q ss_pred EEEEEccCCCCeEEEEeCCCCCe--eeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecccccee
Q psy8285 351 LLATGGGICDQTVRLWNSMNGKE--KCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERIL 428 (507)
Q Consensus 351 ~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~ 428 (507)
.++.++. .|.+...|....-. .+-....+++++++|+.+|+.++. |-.+|.|.+||+..++.++.+..|..+.+
T Consensus 101 ~ivi~Ts--~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~--G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 101 PIVIGTS--HGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLA--GLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eEEEEcC--chhhhhhhhhcccchhhcCCccCCcceeeEecCCCceecc--ccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 3444442 67788888765321 222233478999999999999999 88999999999999999998887766655
Q ss_pred EE---EECCCCCEEEEEeCCCcEEEEecC
Q psy8285 429 SA---VLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 429 ~~---~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
++ .+..++..++++..-|. +|++.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 44 34445567777777776 66654
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.019 Score=34.97 Aligned_cols=34 Identities=15% Similarity=0.356 Sum_probs=29.5
Q ss_pred CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE
Q psy8285 380 DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL 416 (507)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~ 416 (507)
...|..++|+|....||. ++.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~--~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIAL--GTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEE--EECCCeEEEEEC-CCcC
Confidence 357999999999999999 889999999998 5544
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.39 Score=42.01 Aligned_cols=116 Identities=13% Similarity=0.128 Sum_probs=85.9
Q ss_pred CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC--CCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 335 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD--SQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 335 ~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
-...+.++.|+|+.+.++++.. ...-.++=...|+.+.++.-. .....+.+..+|++.++ --.++.+.++.+.
T Consensus 84 ~~~nvS~LTynp~~rtLFav~n---~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~--dER~~~l~~~~vd 158 (316)
T COG3204 84 ETANVSSLTYNPDTRTLFAVTN---KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIV--DERDRALYLFTVD 158 (316)
T ss_pred ccccccceeeCCCcceEEEecC---CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEE--ehhcceEEEEEEc
Confidence 3455999999999988888876 566666666788888887654 56778888888998888 6778888888776
Q ss_pred CccEEEEee---------cc-ccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 413 RLHLIEELK---------IH-QERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 413 ~~~~~~~~~---------~~-~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
....+..+. .+ ....-.++|+|....|..+-+-.=+.||.+..
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 543222111 12 44577899999988888888777777777763
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.24 Score=46.55 Aligned_cols=144 Identities=14% Similarity=0.134 Sum_probs=92.4
Q ss_pred ccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--------eCCEEEEEecCCeEEEEECCCCCcCceee
Q psy8285 217 KPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--------NGNLLSCGTIGGNILHYDVRTHSDYPTAI 288 (507)
Q Consensus 217 ~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 288 (507)
..+...|+..+.....++-.|+..|+.+.....|..-+..... +...| .|-.+..|.-.|.+-...... .
T Consensus 476 ~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~-v 553 (776)
T COG5167 476 DNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIK-V 553 (776)
T ss_pred cCCcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceE-EeecccceEEecccccCCcee-e
Confidence 3445555555466667888899999999988877776433222 23334 455566666667665432111 2
Q ss_pred ecCCCceEEEEEcC----CCCEEEEEeC-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeE
Q psy8285 289 TREGDVVCGLKWSP----NGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTV 363 (507)
Q Consensus 289 ~~~~~~v~~~~~~~----~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i 363 (507)
...+..++.-.|+. ...++|+++. |.|++||.-.. +....+++....|..+..+.+|..+++++ ...+
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~---rAKtalP~lG~aIk~idvta~Gk~ilaTC----k~yl 626 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGK---RAKTALPGLGDAIKHIDVTANGKHILATC----KNYL 626 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcc---hhhhcCcccccceeeeEeecCCcEEEEee----cceE
Confidence 22222222223332 3458888886 99999997654 44445666778899999999999999988 5678
Q ss_pred EEEeCC
Q psy8285 364 RLWNSM 369 (507)
Q Consensus 364 ~i~d~~ 369 (507)
.+.|++
T Consensus 627 lL~d~~ 632 (776)
T COG5167 627 LLTDVP 632 (776)
T ss_pred EEEecc
Confidence 888865
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.5 Score=41.51 Aligned_cols=268 Identities=13% Similarity=0.161 Sum_probs=148.1
Q ss_pred EEEEEcCCeEEEEECCCCcee---EEEecCCCCCCceEEEEEcc-----CCCeEEEEeCCCCcEEEEeCCC--c------
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQ---LLVEYPTYDNAYISCVAWKP-----RTTDLAVTNTCTEYIDLWHEQE--E------ 241 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~---~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~dg~i~iwd~~~--~------ 241 (507)
++.++..|.++||++...+.. .+.+.. -..+|..++.-+ +...||+- .-..+.||.+.. +
T Consensus 40 IivGS~~G~LrIy~P~~~~~~~~~lllE~~--l~~PILqv~~G~F~s~~~~~~LaVL--hP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 40 IIVGSYSGILRIYDPSGNEFQPEDLLLETQ--LKDPILQVECGKFVSGSEDLQLAVL--HPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred EEEeccccEEEEEccCCCCCCCccEEEEEe--cCCcEEEEEeccccCCCCcceEEEe--cCCEEEEEEEEecCCCcccCc
Confidence 788889999999999765422 222222 456787776642 22345544 677888887731 1
Q ss_pred -eeEEEEeecCccEEEEEe--------e-CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe
Q psy8285 242 -RLIQKLRTHMHQVIAMCW--------N-GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS 311 (507)
Q Consensus 242 -~~~~~~~~~~~~v~~~~~--------~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 311 (507)
-.+..+..|.-.-.+..+ . ..+|.+-+.||.+.+|+-+... ...+....--.-.+.|.+....+++++
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--f~~~lp~~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--FSRFLPDFLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--EEEEcCCCCCCcCeEEeecCCEEEEec
Confidence 123333444433333222 2 4688999999999999977532 112211122223467888777777777
Q ss_pred -CCcEEEEEcCCCC--------------------CCCCeeeecCCCCCeeEE---EEccCCCcEEEEEccCCCCeEEEEe
Q psy8285 312 -NNTVKIWDFRQLD--------------------AKRPQVNNQCHLSAVKAI---AWCPWEPTLLATGGGICDQTVRLWN 367 (507)
Q Consensus 312 -d~~i~i~d~~~~~--------------------~~~~~~~~~~~~~~v~~~---~~~~~~~~~~~~~~~~~d~~i~i~d 367 (507)
+..+..|...... ...+-.++. -...+..+ .++.....+++.+ .+++.+.+
T Consensus 194 ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg----er~Lf~l~ 268 (418)
T PF14727_consen 194 SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG----ERSLFCLK 268 (418)
T ss_pred CceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe----cceEEEEc
Confidence 4788888764320 001111111 11223333 3333333455544 67888887
Q ss_pred CCCCCeeeeeecCCCeEEEE-E------CCCCC-eEEEEeccCCCeEEEEeCCCccEEEEeeccccce--eEEEECCCCC
Q psy8285 368 SMNGKEKCHVKTDSQVTSIL-W------SEQYR-ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERI--LSAVLSPDQT 437 (507)
Q Consensus 368 ~~~~~~~~~~~~~~~i~~~~-~------s~~~~-~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i--~~~~~s~~~~ 437 (507)
. +|+.....+......+++ + .|..+ .+++ ++.++.+.||.=. +.+..-+....+| .-..|..-..
T Consensus 269 ~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV--~t~t~~LlVy~d~--~L~WsA~l~~~PVal~v~~~~~~~G 343 (418)
T PF14727_consen 269 D-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLV--GTHTGTLLVYEDT--TLVWSAQLPHVPVALSVANFNGLKG 343 (418)
T ss_pred C-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEE--EecCCeEEEEeCC--eEEEecCCCCCCEEEEecccCCCCc
Confidence 5 566555555443322222 2 22222 3555 6789999998633 3444433333333 2223333456
Q ss_pred EEEEEeCCCcEEEEecCCCCcccc
Q psy8285 438 CVAAASADETISIWNCFPRDKKRK 461 (507)
Q Consensus 438 ~l~s~~~dg~i~iw~~~~~~~~~~ 461 (507)
.|++-+.+|.+.+-=+.+......
T Consensus 344 ~IV~Ls~~G~L~v~YLGTdPs~~~ 367 (418)
T PF14727_consen 344 LIVSLSDEGQLSVSYLGTDPSLFQ 367 (418)
T ss_pred eEEEEcCCCcEEEEEeCCCCcccc
Confidence 888999999999987776654443
|
|
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.65 Score=46.00 Aligned_cols=183 Identities=13% Similarity=0.079 Sum_probs=97.9
Q ss_pred CCcEEEEeCCCceeEEEEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCc--eeeecCCCceEEEEEcCCCCE
Q psy8285 230 TEYIDLWHEQEERLIQKLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYP--TAITREGDVVCGLKWSPNGRY 306 (507)
Q Consensus 230 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~ 306 (507)
.-.|+||+.. |..+..+.-...++..+.| +...|++...+|++.+|++-...... .-.......|..+.+..+|-.
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence 4468888864 5565555544458889999 67788999999999999987543211 111223334555555556655
Q ss_pred EEEEeCCcEEEEEcCCCCCCCCeeeecC---CCCCeeEEEEccCCC--cEEE-EEccCCCC-eEEEEeCCCCCeeeeeec
Q psy8285 307 LASGSNNTVKIWDFRQLDAKRPQVNNQC---HLSAVKAIAWCPWEP--TLLA-TGGGICDQ-TVRLWNSMNGKEKCHVKT 379 (507)
Q Consensus 307 l~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~--~~~~-~~~~~~d~-~i~i~d~~~~~~~~~~~~ 379 (507)
+.+.++..+.+-+.... ....+.. ..-+-.|-...+++. .++. .... .+ .+..-+....+.......
T Consensus 142 vlt~~g~v~~i~~~~~~----~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~--v~~~~~q~~~~~~q~~~~~~~ 215 (829)
T KOG2280|consen 142 VLTVSGQVILINGVEEP----KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVA--VGLHICQVEESRVQLHALSWP 215 (829)
T ss_pred EEecCCcEEEEcCCCcc----hhhhCCCCCCccCCCcceeEecCCCcceeEEeechh--hhhcccceecccccccccCCC
Confidence 55554444444444332 1111111 111112222222221 1111 1100 00 011111111222222222
Q ss_pred CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee
Q psy8285 380 DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK 421 (507)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~ 421 (507)
++.+..+..||+.++|+. -...|.|.+-+....+.+.++.
T Consensus 216 ~~~~~ki~VS~n~~~laL--yt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLAL--YTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CceEEEEEEcCCcceEEE--EecCCcEEEEecchhhhhhccC
Confidence 367889999999999998 6689999999887766666554
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=1.5 Score=40.62 Aligned_cols=268 Identities=9% Similarity=0.047 Sum_probs=131.5
Q ss_pred ceeeeeeCC-CCEEEEEcCCeEEEEECCCCc-eeEEE-ecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 167 YTSGLDWGY-HDTLAVALDTSVYTWNTKTNK-TQLLV-EYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 167 ~i~~~~~s~-~~~~~~~~~~~i~iw~~~~~~-~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
.+..+.|.. +..++++.++.|..=. +.|+ ..+.. ..+. ....+.++.|.++ ..++ + +..|.|..- ...++.
T Consensus 47 ~l~~v~F~d~~~g~avG~~G~il~T~-DgG~tW~~~~~~~~~-~~~~l~~v~~~~~-~~~~-~-G~~g~i~~S-~DgG~t 120 (334)
T PRK13684 47 NLLDIAFTDPNHGWLVGSNRTLLETN-DGGETWEERSLDLPE-ENFRLISISFKGD-EGWI-V-GQPSLLLHT-TDGGKN 120 (334)
T ss_pred ceEEEEEeCCCcEEEEECCCEEEEEc-CCCCCceECccCCcc-cccceeeeEEcCC-cEEE-e-CCCceEEEE-CCCCCC
Confidence 455577754 3456666666554321 2232 22211 1111 2345778888653 3333 3 355543332 122222
Q ss_pred EEEEe---ecC-ccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8285 244 IQKLR---THM-HQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWD 319 (507)
Q Consensus 244 ~~~~~---~~~-~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d 319 (507)
-..+. ... ........++..+..++..|.|..=+ +.++.=..........+.++.+.|++.+++++..|.+..-
T Consensus 121 W~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~G~i~~s- 198 (334)
T PRK13684 121 WTRIPLSEKLPGSPYLITALGPGTAEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVSSRGNFYST- 198 (334)
T ss_pred CeEccCCcCCCCCceEEEEECCCcceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEeCCceEEEE-
Confidence 22221 011 11222222333333444455543322 1222111112223457889999999988888777766532
Q ss_pred cCCCCCCCCeee-ecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec-----CCCeEEEEECCCCC
Q psy8285 320 FRQLDAKRPQVN-NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT-----DSQVTSILWSEQYR 393 (507)
Q Consensus 320 ~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~i~~~~~s~~~~ 393 (507)
.+.+. +.... .......++.+.+.|+++ +++++. .|.+++=....++.-..... ...+..+.+.|++.
T Consensus 199 ~~~gg--~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~---~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~ 272 (334)
T PRK13684 199 WEPGQ--TAWTPHQRNSSRRLQSMGFQPDGN-LWMLAR---GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE 272 (334)
T ss_pred cCCCC--CeEEEeeCCCcccceeeeEcCCCC-EEEEec---CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC
Confidence 11110 11111 122446788999999874 555554 67665433444433222111 13478899999888
Q ss_pred eEEEEeccCCCeEEEEeCCCccEEEEee---ccccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 394 ELVTSHGKQDCSLKMWEYPRLHLIEELK---IHQERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
.+++ | .+|.+. .....++.-.... .-....+.+.|..+++.++ .+..|.|..|+-
T Consensus 273 ~~~~--G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 273 IWAG--G-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred EEEE--c-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 7766 4 466554 3344443333322 1223577788776665544 666788877763
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.023 Score=33.43 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=27.1
Q ss_pred cceeeeeeccCcc--eeeeccccccccceeeecccCC
Q psy8285 7 SAVKAIAWCPWEP--TLLATGGGICDQTVRLWNSMNG 41 (507)
Q Consensus 7 ~~V~~l~fsp~g~--~llasg~~~~d~~i~iWd~~~g 41 (507)
++|.+++|||++. -||+-.. .-+.|-|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E--~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAE--HQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEc--cCCeEEEEEcccC
Confidence 5799999998644 5788887 7899999999864
|
It contains a characteristic DLL sequence motif. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.2 Score=44.54 Aligned_cols=189 Identities=12% Similarity=0.087 Sum_probs=86.6
Q ss_pred EEEeeCCEEEEEecCC------eEEEEECCCCCcCceeeec---CCCceEEEEEcCCCCEEEEEe-C-----CcEEEEEc
Q psy8285 256 AMCWNGNLLSCGTIGG------NILHYDVRTHSDYPTAITR---EGDVVCGLKWSPNGRYLASGS-N-----NTVKIWDF 320 (507)
Q Consensus 256 ~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~ 320 (507)
++..++..++.|+.++ .+..||..+.+- ..... .......+. -++++++.|+ + ..+..||.
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W--~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~ 365 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSW--NKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKP 365 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCCCee--eECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcC
Confidence 3444677777777543 467788776542 11111 111112222 2566777766 2 35778888
Q ss_pred CCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC----CeEEEEeCCCCCeee--eeecCCCeEEEEECCCCCe
Q psy8285 321 RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD----QTVRLWNSMNGKEKC--HVKTDSQVTSILWSEQYRE 394 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d----~~i~i~d~~~~~~~~--~~~~~~~i~~~~~s~~~~~ 394 (507)
.+..- .....+....... +++. -+..+++.|+...+ ..+..||..+++-.. .+.....-.++ ...+++.
T Consensus 366 ~~~~W-~~~~~lp~~r~~~-~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~-~~~~~~i 440 (534)
T PHA03098 366 GESKW-REEPPLIFPRYNP-CVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCA-IYHDGKI 440 (534)
T ss_pred CCCce-eeCCCcCcCCccc-eEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceE-EEECCEE
Confidence 76421 1111111111111 1222 23367776652112 468889987654222 11111111112 2224454
Q ss_pred EEEEeccCC--------CeEEEEeCCCcc--EEEEeeccccceeEEEECCCCCEEEEEeCC-----CcEEEEecCCCC
Q psy8285 395 LVTSHGKQD--------CSLKMWEYPRLH--LIEELKIHQERILSAVLSPDQTCVAAASAD-----ETISIWNCFPRD 457 (507)
Q Consensus 395 l~~~~g~~d--------~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~~~ 457 (507)
++. |+.+ ..+.+||..+.+ .+..+.........+.+ +++.++.|+.+ ..+.+||..+..
T Consensus 441 yv~--GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 441 YVI--GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEE--CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 454 4332 238888887643 22222211111112222 56666667654 357777766543
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.27 Score=50.86 Aligned_cols=146 Identities=16% Similarity=0.121 Sum_probs=87.8
Q ss_pred CCceEEEEEccCCCeEEEEe-CCCCcEEEEeCCCceeEE-----EEee------cCccEEEEEee---CCEEEEEecCCe
Q psy8285 208 NAYISCVAWKPRTTDLAVTN-TCTEYIDLWHEQEERLIQ-----KLRT------HMHQVIAMCWN---GNLLSCGTIGGN 272 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~-~~dg~i~iwd~~~~~~~~-----~~~~------~~~~v~~~~~~---~~~l~~~~~dg~ 272 (507)
.-++..+...+|+...++.. +.+-.|..||+.+...-. .+.. ...-..++.|+ ....+....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 34566677777876655542 333478899987542211 1111 12233456664 345667778898
Q ss_pred EEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeeeecC-CCCCeeEEEEccCCCc
Q psy8285 273 ILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQC-HLSAVKAIAWCPWEPT 350 (507)
Q Consensus 273 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~ 350 (507)
|++..+......... .......++++|+|.|+.++.|.+ |++.-|...-. ....+..... ....|.++.|-.....
T Consensus 180 l~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeE
Confidence 888877653322222 234567899999999999999995 99988876532 0011111111 2467999999876655
Q ss_pred EEEEE
Q psy8285 351 LLATG 355 (507)
Q Consensus 351 ~~~~~ 355 (507)
+++.+
T Consensus 258 lvvy~ 262 (1405)
T KOG3630|consen 258 LVVYG 262 (1405)
T ss_pred EEEec
Confidence 55544
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.047 Score=45.51 Aligned_cols=133 Identities=8% Similarity=0.035 Sum_probs=71.8
Q ss_pred CCCCcEEEEeCCCceeEEEE-eecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEE-EEcCCCC
Q psy8285 228 TCTEYIDLWHEQEERLIQKL-RTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGL-KWSPNGR 305 (507)
Q Consensus 228 ~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~-~~~~~~~ 305 (507)
+.+|.|+-+++...+....- ..+... ..+.--+..+++|+.+|.|++|..................|-++ .-..++.
T Consensus 37 sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~ 115 (238)
T KOG2444|consen 37 SADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSS 115 (238)
T ss_pred cCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccc
Confidence 67888888877653322111 112111 22222466788999999999999884332222222222333322 2223444
Q ss_pred EEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee
Q psy8285 306 YLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC 375 (507)
Q Consensus 306 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 375 (507)
+..++. ++.|+.|++... +.+-....|.. - ++..++++++ ++.+.+|++.....+.
T Consensus 116 ~~c~~~~dg~ir~~n~~p~---k~~g~~g~h~~-------~-~~e~~ivv~s---d~~i~~a~~S~d~~~k 172 (238)
T KOG2444|consen 116 LGCVGAQDGRIRACNIKPN---KVLGYVGQHNF-------E-SGEELIVVGS---DEFLKIADTSHDRVLK 172 (238)
T ss_pred eeEEeccCCceeeeccccC---ceeeeeccccC-------C-CcceeEEecC---CceEEeeccccchhhh
Confidence 666666 799999998765 44443333442 2 2335555555 6666666655544433
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.32 E-value=2.1 Score=38.67 Aligned_cols=266 Identities=11% Similarity=0.097 Sum_probs=121.1
Q ss_pred ceeeeeeCCC-CEEEEEcCCeEEEEECCC-CceeEEEecCC--CCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 167 YTSGLDWGYH-DTLAVALDTSVYTWNTKT-NKTQLLVEYPT--YDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 167 ~i~~~~~s~~-~~~~~~~~~~i~iw~~~~-~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
.+..|.|..+ .-++++..+.| +...+ |+.-....... ...-...++.|..+ .-++++ ..+. .+.-...++
T Consensus 18 ~l~dV~F~d~~~G~~VG~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG--~~g~-ll~T~DgG~ 91 (302)
T PF14870_consen 18 PLLDVAFVDPNHGWAVGAYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG--EPGL-LLHTTDGGK 91 (302)
T ss_dssp -EEEEEESSSS-EEEEETTTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE--ETTE-EEEESSTTS
T ss_pred ceEEEEEecCCEEEEEecCCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc--CCce-EEEecCCCC
Confidence 4556777643 35556666654 33333 33212211111 01234677888643 334443 4453 333334444
Q ss_pred eEEEEe---ecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcE-EE
Q psy8285 243 LIQKLR---THMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTV-KI 317 (507)
Q Consensus 243 ~~~~~~---~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i-~i 317 (507)
.-..+. .-......+.. +......++..|.|+.= .+.+..=..........+..+.-++||++++++..|.+ .-
T Consensus 92 tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s 170 (302)
T PF14870_consen 92 TWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSS 170 (302)
T ss_dssp S-EE----TT-SS-EEEEEEEETTEEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEE
T ss_pred CcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEE
Confidence 433332 12223333333 55555555556655432 22222112233445577888999999999999987655 46
Q ss_pred EEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeC-CCCCeee----eeecC-CCeEEEEECCC
Q psy8285 318 WDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNS-MNGKEKC----HVKTD-SQVTSILWSEQ 391 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~-~~~~~~~----~~~~~-~~i~~~~~s~~ 391 (507)
||.-.. .-..........|..|.|.|++ .+.+.+. .+.|++=+. ...+.-. .+... -.+..++|.++
T Consensus 171 ~~~G~~---~w~~~~r~~~~riq~~gf~~~~-~lw~~~~---Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 171 WDPGQT---TWQPHNRNSSRRIQSMGFSPDG-NLWMLAR---GGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp E-TT-S---S-EEEE--SSS-EEEEEE-TTS--EEEEET---TTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred ecCCCc---cceEEccCccceehhceecCCC-CEEEEeC---CcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 665432 1222223356789999999997 4555554 788888872 2222111 11112 34899999999
Q ss_pred CCeEEEEeccCCCeEEEEeCCCccEEEEee---ccccceeEEEECCCCCEEEEEeCCCcEEEE
Q psy8285 392 YRELVTSHGKQDCSLKMWEYPRLHLIEELK---IHQERILSAVLSPDQTCVAAASADETISIW 451 (507)
Q Consensus 392 ~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw 451 (507)
+...++ |. .|.+. .....|+-=...+ .-....+.+.|.++.+ -...+.+|.|.-|
T Consensus 244 ~~~wa~--gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 244 NEIWAV--GG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-GFVLGQDGVLLRY 301 (302)
T ss_dssp S-EEEE--ES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTE-EEEE-STTEEEEE
T ss_pred CCEEEE--eC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCCc-eEEECCCcEEEEe
Confidence 888877 43 44333 3344444333222 2245678888876644 4445668877655
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.32 Score=50.33 Aligned_cols=143 Identities=17% Similarity=0.204 Sum_probs=89.5
Q ss_pred ceEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCCCCC-----Cee---eecCCCCCeeEEEEccCCCcEEEEEccCCCCe
Q psy8285 294 VVCGLKWSPNGRYLASGS--N-NTVKIWDFRQLDAKR-----PQV---NNQCHLSAVKAIAWCPWEPTLLATGGGICDQT 362 (507)
Q Consensus 294 ~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~~~~~-----~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~ 362 (507)
.+..+...+|+...++.. + -.|..||++...... ++. .......-..++.|+|.-....+.... |+.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~--dls 179 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLS--DLS 179 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcc--ccc
Confidence 445556667776655544 3 578899987642111 111 111123345678888865433343333 888
Q ss_pred EEEEeCCCCC-eeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec----cccceeEEEECCCCC
Q psy8285 363 VRLWNSMNGK-EKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI----HQERILSAVLSPDQT 437 (507)
Q Consensus 363 i~i~d~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~ 437 (507)
|++..+.... ....+......++++|+|.|+.+++ |..+|++.-|.. .++....+.. ....|.+|.|-....
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~i--G~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFI--GRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeE--ecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEeccee
Confidence 8888765433 2333444567899999999999999 899999999874 3443333322 246799999987776
Q ss_pred EEEE
Q psy8285 438 CVAA 441 (507)
Q Consensus 438 ~l~s 441 (507)
++++
T Consensus 257 flvv 260 (1405)
T KOG3630|consen 257 FLVV 260 (1405)
T ss_pred EEEE
Confidence 6654
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.26 E-value=2 Score=38.06 Aligned_cols=217 Identities=14% Similarity=0.134 Sum_probs=126.3
Q ss_pred ceEEEEEccCCCeEEEEeCCCCcEEEEeCC------Cc-eeEEEEee-----cCccEEEEEee--------------CCE
Q psy8285 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQ------EE-RLIQKLRT-----HMHQVIAMCWN--------------GNL 263 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~------~~-~~~~~~~~-----~~~~v~~~~~~--------------~~~ 263 (507)
.-..|+++|.+..-++. ...+...+||.. .. .++..+.. .....+.+.|+ ...
T Consensus 24 N~WGia~~p~~~~WVad-ngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVAN-TGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEec-CCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 45789999998777776 778899999986 11 22333331 12345666662 124
Q ss_pred EEEEecCCeEEEEECCCCCc----Cceeee-cCCCce-EEEEEcC--CCCEEEEEe--CCcEEEEEcCCCCCCCCeeeec
Q psy8285 264 LSCGTIGGNILHYDVRTHSD----YPTAIT-REGDVV-CGLKWSP--NGRYLASGS--NNTVKIWDFRQLDAKRPQVNNQ 333 (507)
Q Consensus 264 l~~~~~dg~i~i~d~~~~~~----~~~~~~-~~~~~v-~~~~~~~--~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~ 333 (507)
++.+++||+|.-|...-... ....+. .....| ..+++.. .+.+|..+. .++|.+||-.-. ++..-.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~----~~~~~g 178 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR----PPPLPG 178 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc----cccCCC
Confidence 67889999999998654332 111121 112333 3455553 367777777 499999986542 111100
Q ss_pred CCCCCeeEEEEccC-----CCcEEEEEc-----------cCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECC----
Q psy8285 334 CHLSAVKAIAWCPW-----EPTLLATGG-----------GICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSE---- 390 (507)
Q Consensus 334 ~~~~~v~~~~~~~~-----~~~~~~~~~-----------~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~---- 390 (507)
....+-.-.-|.|. +.+++++-. +.--|.|-+||+ .++.++.+... ...+.++..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 01111000011111 123333221 001468999996 67777777554 3456777755
Q ss_pred --CCCeEEEEeccCCCeEEEEeCCCccEEEEeecccc------ceeEEEECC
Q psy8285 391 --QYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQE------RILSAVLSP 434 (507)
Q Consensus 391 --~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~------~i~~~~~s~ 434 (507)
.+..|+- ..-||+|..||..+++.+-.+....+ .++.+.|..
T Consensus 258 ~~sg~lLVG--NFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 258 SLSGALLVG--NFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCCCeEEe--ecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 3566665 56699999999999988877765332 367788865
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=2.5 Score=39.16 Aligned_cols=152 Identities=13% Similarity=0.105 Sum_probs=84.3
Q ss_pred CccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCe
Q psy8285 251 MHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQ 329 (507)
Q Consensus 251 ~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~ 329 (507)
...+.++.+ .+..++..+..|.+..-.-..++.-..........++++.+.++++.++++..|.+.+=....+...+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~ 251 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKP 251 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccc
Confidence 445677777 2334445555666553211111111112223456788999999999888877777653333333221211
Q ss_pred eee-cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec----CCCeEEEEECCCCCeEEEEeccCCC
Q psy8285 330 VNN-QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT----DSQVTSILWSEQYRELVTSHGKQDC 404 (507)
Q Consensus 330 ~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~g~~d~ 404 (507)
... ......+..+.+.|++ .+++++. +|.+. .....++.-..... ......+.|..+++.+++ | ..|
T Consensus 252 ~~~~~~~~~~l~~v~~~~~~-~~~~~G~---~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~--G-~~G 323 (334)
T PRK13684 252 IIPEITNGYGYLDLAYRTPG-EIWAGGG---NGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL--G-QRG 323 (334)
T ss_pred cCCccccccceeeEEEcCCC-CEEEEcC---CCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE--C-CCc
Confidence 111 1122357888999876 5666665 67655 34455554333321 135778888877777776 4 578
Q ss_pred eEEEEe
Q psy8285 405 SLKMWE 410 (507)
Q Consensus 405 ~i~v~d 410 (507)
.|-.++
T Consensus 324 ~il~~~ 329 (334)
T PRK13684 324 VLLRYV 329 (334)
T ss_pred eEEEec
Confidence 777665
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.22 E-value=1 Score=44.85 Aligned_cols=112 Identities=13% Similarity=0.203 Sum_probs=71.7
Q ss_pred CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe-ecCccEEEEEe----eCCEEEEEecCCeEEEEECCC--
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR-THMHQVIAMCW----NGNLLSCGTIGGNILHYDVRT-- 280 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~-- 280 (507)
-..++-+.-+.-++..++- +....+.|||...+....... ...+.|.++.| +++.+++.+....|.+|.-..
T Consensus 29 i~~~~li~gss~~k~a~V~-~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVD-SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCCcceEeecccCcEEEEE-CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 3445555555544444443 666789999999876443322 35788999999 688888888888888875421
Q ss_pred ---CCc---Ccee--eecCC-CceEEEEEcCCCCEEEEEeCCcEEEEEcC
Q psy8285 281 ---HSD---YPTA--ITREG-DVVCGLKWSPNGRYLASGSNNTVKIWDFR 321 (507)
Q Consensus 281 ---~~~---~~~~--~~~~~-~~v~~~~~~~~~~~l~~~~d~~i~i~d~~ 321 (507)
... +... +..+. .+|.+..|.++|.+++ |+.+.+.|+|-.
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk~ 156 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDKW 156 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEE-EeCCEEEEECCC
Confidence 110 1111 22333 5788999999886554 445788888743
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.22 E-value=4.5 Score=41.94 Aligned_cols=224 Identities=13% Similarity=0.046 Sum_probs=118.0
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCC------ceEEEEEc----------------cCCCeEEEEeCCCCcEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA------YISCVAWK----------------PRTTDLAVTNTCTEYIDL 235 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~------~v~~~~~~----------------~~~~~l~~~~~~dg~i~i 235 (507)
++.++.++.|.-.|..+|+.+-.++... ... ....+.+. ..+.+++.+ +.|+.+.-
T Consensus 197 lYv~t~~~~V~ALDa~TGk~lW~~d~~~-~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~-T~Dg~LiA 274 (764)
T TIGR03074 197 LYLCTPHNKVIALDAATGKEKWKFDPKL-KTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILP-TSDARLIA 274 (764)
T ss_pred EEEECCCCeEEEEECCCCcEEEEEcCCC-CcccccccccccceEEecCCcccccccccccccccCCEEEEe-cCCCeEEE
Confidence 6666778889999999988776665432 111 01222222 123477777 88999999
Q ss_pred EeCCCceeEEEEeecCccE----------------EE-EEeeCCEEEEEec----------CCeEEEEECCCCCcCceee
Q psy8285 236 WHEQEERLIQKLRTHMHQV----------------IA-MCWNGNLLSCGTI----------GGNILHYDVRTHSDYPTAI 288 (507)
Q Consensus 236 wd~~~~~~~~~~~~~~~~v----------------~~-~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~ 288 (507)
.|..+|+....+.. .+.+ ++ -...+..+++|+. +|.|+-+|.++++..-...
T Consensus 275 LDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 275 LDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99999998876532 1111 00 1113455666643 6889999999987433222
Q ss_pred ecCCCceEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEE
Q psy8285 289 TREGDVVCGLKWSPNGRYLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLW 366 (507)
Q Consensus 289 ~~~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~ 366 (507)
...... .. ..+.+.....++ + -...-+|.+.+ .+..-.+... ..+....+.... +.+.+.|.-.
T Consensus 354 ~g~p~~-~~--~~~~g~~~~~gg~n~W~~~s~D~~~g----lvy~ptGn~~----pd~~g~~r~~~~---n~y~~slvAL 419 (764)
T TIGR03074 354 PGNPDP-TA--PPAPGETYTRNTPNSWSVASYDEKLG----LVYLPMGNQT----PDQWGGDRTPAD---EKYSSSLVAL 419 (764)
T ss_pred cCCCCc-cc--CCCCCCEeccCCCCccCceEEcCCCC----eEEEeCCCcc----ccccCCccccCc---ccccceEEEE
Confidence 211111 00 011333222222 2 13334444433 1111111111 111010000000 1125667778
Q ss_pred eCCCCCeeeeeec-CC---------CeEEEEECC-CCC---eEEEEeccCCCeEEEEeCCCccEEEEe
Q psy8285 367 NSMNGKEKCHVKT-DS---------QVTSILWSE-QYR---ELVTSHGKQDCSLKMWEYPRLHLIEEL 420 (507)
Q Consensus 367 d~~~~~~~~~~~~-~~---------~i~~~~~s~-~~~---~l~~~~g~~d~~i~v~d~~~~~~~~~~ 420 (507)
|.++|+....++. +. ...-+.+.. +|+ .++. +..+|.++++|.++++++...
T Consensus 420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~--~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVA--PTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred eCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEE--ECCCCEEEEEECCCCCEEeec
Confidence 8888887776654 11 122222322 553 5555 889999999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=95.17 E-value=1.7 Score=36.73 Aligned_cols=95 Identities=18% Similarity=0.161 Sum_probs=60.7
Q ss_pred ceEEEEEcCCCCEEEEEe--CCcEEEEE--cCCCCCC--CCeeeecC----CCCCeeEEEEccCCCcEEEEEccCCCCeE
Q psy8285 294 VVCGLKWSPNGRYLASGS--NNTVKIWD--FRQLDAK--RPQVNNQC----HLSAVKAIAWCPWEPTLLATGGGICDQTV 363 (507)
Q Consensus 294 ~v~~~~~~~~~~~l~~~~--d~~i~i~d--~~~~~~~--~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~d~~i 363 (507)
.-+.++|+.+.+.+.... +-+|.-|| ..++... +.+..++. .....-.++...+|..++++-. .++|
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n---g~~V 235 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN---GGTV 235 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec---CcEE
Confidence 345788988887776655 46776677 4444221 22222221 1111234555666754555544 7899
Q ss_pred EEEeCCCCCeeeeeecC-CCeEEEEECCC
Q psy8285 364 RLWNSMNGKEKCHVKTD-SQVTSILWSEQ 391 (507)
Q Consensus 364 ~i~d~~~~~~~~~~~~~-~~i~~~~~s~~ 391 (507)
.-.|..+|+.+..+..+ ..+++++|--.
T Consensus 236 ~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 99999999999999887 68999999643
|
|
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=95.05 E-value=3 Score=38.98 Aligned_cols=141 Identities=16% Similarity=0.204 Sum_probs=91.2
Q ss_pred EEEEEcCCeEEEEECCCCc--eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE----EEEeecC
Q psy8285 178 TLAVALDTSVYTWNTKTNK--TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI----QKLRTHM 251 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~----~~~~~~~ 251 (507)
.+.+...|.+.=|-..... ....+... ..++|.++.|++|.+.||+- -.+.+|.+++....+.. .+.+...
T Consensus 36 qlfavrSggatgvvvkgpndDVpiSfdm~--d~G~I~SIkFSlDnkilAVQ-R~~~~v~f~nf~~d~~~l~~~~~ck~k~ 112 (657)
T KOG2377|consen 36 QLFAVRSGGATGVVVKGPNDDVPISFDMD--DKGEIKSIKFSLDNKILAVQ-RTSKTVDFCNFIPDNSQLEYTQECKTKN 112 (657)
T ss_pred eEEEEecCCeeEEEEeCCCCCCCceeeec--CCCceeEEEeccCcceEEEE-ecCceEEEEecCCCchhhHHHHHhccCc
Confidence 4444445555556554432 22233332 56799999999999999998 89999999998543332 2233455
Q ss_pred ccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--C-CcEEEEEcCC
Q psy8285 252 HQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--N-NTVKIWDFRQ 322 (507)
Q Consensus 252 ~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~ 322 (507)
..|..+.| +..-+|.....| +-+|.........+....++..|.-..|.++.+.+.-++ . +.+.=+.+++
T Consensus 113 ~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 113 ANILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred ceeEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 66899999 566777776544 566666554444566677888888889999887654433 2 4444444443
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=3.3 Score=39.23 Aligned_cols=141 Identities=7% Similarity=-0.007 Sum_probs=83.6
Q ss_pred eeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce-----eE
Q psy8285 171 LDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER-----LI 244 (507)
Q Consensus 171 ~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~-----~~ 244 (507)
+.-++++ +++++..|.+..=.-.....-+....+ ....++.+.|.+++..++++ ..|.+.. ....++ ..
T Consensus 244 v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~--~~~~l~~v~~~~dg~l~l~g--~~G~l~~-S~d~G~~~~~~~f 318 (398)
T PLN00033 244 VNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRA--SARRIQNMGWRADGGLWLLT--RGGGLYV-SKGTGLTEEDFDF 318 (398)
T ss_pred EEEcCCCCEEEEECCccEEEecCCCCcceEEecCC--CccceeeeeEcCCCCEEEEe--CCceEEE-ecCCCCcccccce
Confidence 4556776 778887776554222222211222222 45678999999998888766 5666544 333333 12
Q ss_pred EEEee--cCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceee---ecCCCceEEEEEcCCCCEEEEEeCCcEEEE
Q psy8285 245 QKLRT--HMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAI---TREGDVVCGLKWSPNGRYLASGSNNTVKIW 318 (507)
Q Consensus 245 ~~~~~--~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~ 318 (507)
..... ....+.++.| +.+.++.++..|.+....- .++ .-... ..-...++.+.|.++++.+++|.+|.|.-|
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D-~G~-tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTD-GGK-SWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCC-CCc-ceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 22221 2235888888 5566667777887766542 222 11121 223456889999988899999988887655
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.3 Score=41.79 Aligned_cols=145 Identities=10% Similarity=0.031 Sum_probs=80.8
Q ss_pred ceEEEEEcCCCCEEEEEe------------CC-cEEEEEcCCCC-CCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC
Q psy8285 294 VVCGLKWSPNGRYLASGS------------NN-TVKIWDFRQLD-AKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC 359 (507)
Q Consensus 294 ~v~~~~~~~~~~~l~~~~------------d~-~i~i~d~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 359 (507)
....++|.++|+++++-. .+ .|.+++-.++. .......+.........+++.+++ ++++..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~--- 89 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATP--- 89 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCC---
Confidence 345688999999877742 13 67777654332 112233343334456889999887 555442
Q ss_pred CCeEEEEeCCCC-----Ceee---eeec-----CCCeEEEEECCCCCeEEEEeccC------------------CCeEEE
Q psy8285 360 DQTVRLWNSMNG-----KEKC---HVKT-----DSQVTSILWSEQYRELVTSHGKQ------------------DCSLKM 408 (507)
Q Consensus 360 d~~i~i~d~~~~-----~~~~---~~~~-----~~~i~~~~~s~~~~~l~~~~g~~------------------d~~i~v 408 (507)
....++.|.... +... .+.. +.....+.|.|||.+.++. |+. .|.|.-
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~-G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNH-GNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEec-ccCCCceeccCCCccCcccccCceEEE
Confidence 333334454321 2111 1211 2347789999999876653 321 144566
Q ss_pred EeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCC
Q psy8285 409 WEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASAD 445 (507)
Q Consensus 409 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d 445 (507)
++..+++. ..+...-.....++|+++|+++++-..+
T Consensus 169 ~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 169 YNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EecCCCeE-EEEecCcCCCccceECCCCCEEEEccCC
Confidence 66554433 2232222335689999999887764433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.28 Score=42.07 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=54.2
Q ss_pred ccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCcee------ee-------cCCCceEEEEEcCCCCEEEEEeCCcEEEE
Q psy8285 252 HQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTA------IT-------REGDVVCGLKWSPNGRYLASGSNNTVKIW 318 (507)
Q Consensus 252 ~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~~l~~~~d~~i~i~ 318 (507)
.++..+..+++++++.+.+|.+++||+.+.+..... +. .....|..+.++.+|.-+++-++|..+.|
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y 92 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSY 92 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEe
Confidence 345556668999999999999999999987632221 22 34567888888988988888888888999
Q ss_pred EcCCC
Q psy8285 319 DFRQL 323 (507)
Q Consensus 319 d~~~~ 323 (507)
+..-+
T Consensus 93 ~~~L~ 97 (219)
T PF07569_consen 93 SPDLG 97 (219)
T ss_pred ccccc
Confidence 87653
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.31 Score=47.98 Aligned_cols=102 Identities=14% Similarity=0.126 Sum_probs=65.7
Q ss_pred EeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCC
Q psy8285 366 WNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASAD 445 (507)
Q Consensus 366 ~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d 445 (507)
.|+-.|+....+.+.+.|--+..+..+..|+. -...-.+.++|+.+.+....+ +-.+-+.|-|-...++.-+.|
T Consensus 323 vdli~g~~~~~inh~~~vdwielne~~~kllf--rdkk~kl~l~di~s~qksmil----nfcsymqwvp~sdvivaqn~d 396 (1636)
T KOG3616|consen 323 VDLIGGQNEGFINHEGAVDWIELNERAHKLLF--RDKKLKLHLVDIESCQKSMIL----NFCSYMQWVPGSDVIVAQNGD 396 (1636)
T ss_pred eecccCcccccccccccccceeccchhhhhhc--ccccceeEEEEcccchHHHHH----HHhhhheeccCcceEEecCCC
Confidence 56666777667777777777777777777777 455557888888764332211 123457899988888877777
Q ss_pred CcEEEEecCCCCcccceeecCCCcceEE
Q psy8285 446 ETISIWNCFPRDKKRKARQVGSGSSLEF 473 (507)
Q Consensus 446 g~i~iw~~~~~~~~~~~~~~~~~~~~~~ 473 (507)
....-|++.-++.+...+..+.+..+.-
T Consensus 397 nl~iwyn~d~peqvt~~kikgdv~~l~r 424 (1636)
T KOG3616|consen 397 NLCIWYNIDAPEQVTMFKIKGDVEALER 424 (1636)
T ss_pred ceEEEecCCcchhheeeEecccchhhhc
Confidence 5444456666666665555555544433
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.16 Score=41.83 Aligned_cols=72 Identities=28% Similarity=0.396 Sum_probs=47.7
Q ss_pred eeeeeeCCCCEEEEEcCCeEEEEECCCCc--------------------eeE-----EE-------ecCC------CCCC
Q psy8285 168 TSGLDWGYHDTLAVALDTSVYTWNTKTNK--------------------TQL-----LV-------EYPT------YDNA 209 (507)
Q Consensus 168 i~~~~~s~~~~~~~~~~~~i~iw~~~~~~--------------------~~~-----~~-------~~~~------~~~~ 209 (507)
.++++||.||.+|+..+..|.|.+..+.. ... .. ..+. ....
T Consensus 7 ~~~l~WS~Dg~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~~ 86 (173)
T PF12657_consen 7 PNALAWSEDGQLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISSS 86 (173)
T ss_pred CcCeeECCCCCEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceeccccccccccccc
Confidence 45799999999999999999999433221 000 00 0000 0113
Q ss_pred ceEEEEEccCC------CeEEEEeCCCCcEEEEeCCC
Q psy8285 210 YISCVAWKPRT------TDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 210 ~v~~~~~~~~~------~~l~~~~~~dg~i~iwd~~~ 240 (507)
.+..++|||.| ..|++. +.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavL-Ts~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVL-TSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEE-cCCCeEEEEecCC
Confidence 78899999964 456666 8999999998653
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.82 E-value=4.2 Score=39.52 Aligned_cols=149 Identities=11% Similarity=0.195 Sum_probs=85.1
Q ss_pred CceEEEEEccCCCeEEEEe--CCCCcEEEEeCCCceeEEEEeecCccEEEEEe------eCCEEEEEecCCeEEEEECCC
Q psy8285 209 AYISCVAWKPRTTDLAVTN--TCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW------NGNLLSCGTIGGNILHYDVRT 280 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~------~~~~l~~~~~dg~i~i~d~~~ 280 (507)
.++..++|. ||+.++... -.+|.+++=| .+.+ +.-..|..++| +...+.+......|.+|.+.-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 468889997 566655541 1233333322 1222 33345788888 232455555678999999863
Q ss_pred CCc----C-ceeeecCCC----ceEEEEEcCCCCEEEEEeCCcE-EEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCc
Q psy8285 281 HSD----Y-PTAITREGD----VVCGLKWSPNGRYLASGSNNTV-KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPT 350 (507)
Q Consensus 281 ~~~----~-~~~~~~~~~----~v~~~~~~~~~~~l~~~~d~~i-~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 350 (507)
... . ....-.... --..+.|+|....|++-....+ .+++++... ..++.-....+.|.|.+|.+||.+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~--srVkaDi~~~G~IhCACWT~DG~R 169 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDS--SRVKADIKTSGLIHCACWTKDGQR 169 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCC--ceEEEeccCCceEEEEEecCcCCE
Confidence 210 1 111111111 1245779999988887663223 345555431 233333346788999999999988
Q ss_pred EEEEEccCCCCeEEEEeCC
Q psy8285 351 LLATGGGICDQTVRLWNSM 369 (507)
Q Consensus 351 ~~~~~~~~~d~~i~i~d~~ 369 (507)
++++-+. .=.-++||-.
T Consensus 170 LVVAvGS--sLHSyiWd~~ 186 (671)
T PF15390_consen 170 LVVAVGS--SLHSYIWDSA 186 (671)
T ss_pred EEEEeCC--eEEEEEecCc
Confidence 8776653 4456788854
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=94.77 E-value=1.4 Score=33.74 Aligned_cols=116 Identities=14% Similarity=0.135 Sum_probs=73.5
Q ss_pred EEEcCCCCEEEEEeC-CcEEEEEcCCCC-----CCCCeeeecCCCCCeeEEEEcc----CCCcEEEEEccCCCCeEEEEe
Q psy8285 298 LKWSPNGRYLASGSN-NTVKIWDFRQLD-----AKRPQVNNQCHLSAVKAIAWCP----WEPTLLATGGGICDQTVRLWN 367 (507)
Q Consensus 298 ~~~~~~~~~l~~~~d-~~i~i~d~~~~~-----~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~d~~i~i~d 367 (507)
-.|......|+.++. ++|.|++..... ....+..+. -...|++++-.+ ++..+|..++ ...+..||
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt---~t~llaYD 79 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT---QTSLLAYD 79 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec---cceEEEEE
Confidence 356555666777774 999999876542 112233332 456677776554 3456788887 88999999
Q ss_pred CCCCCeeeeeecCCCeEEEEEC---C-CCCeEEEEeccCCCeEEEEeCCCccEEEEe
Q psy8285 368 SMNGKEKCHVKTDSQVTSILWS---E-QYRELVTSHGKQDCSLKMWEYPRLHLIEEL 420 (507)
Q Consensus 368 ~~~~~~~~~~~~~~~i~~~~~s---~-~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~ 420 (507)
+....-+...+.+..+.++.+- . +.+.+++ | .+..|.-||....+...+.
T Consensus 80 V~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~iv--G-Gncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 80 VENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIV--G-GNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cccCchhhhhhCccceeEEEEEecCCCCCcEEEE--C-ceEEEEEeCCCCcEEEEEe
Confidence 9988766655555666666652 2 3344554 3 3677888886655554443
|
|
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=94.59 E-value=4.7 Score=40.34 Aligned_cols=194 Identities=9% Similarity=0.094 Sum_probs=96.8
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE--E--eecCccEEEEEee
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK--L--RTHMHQVIAMCWN 260 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~--~--~~~~~~v~~~~~~ 260 (507)
-.|+|++.. |........ ....+-.+.|+.+...|++ ..+|++++|++.. +.+.. . ......|..+.+-
T Consensus 64 ~~I~If~~s-G~lL~~~~w---~~~~lI~mgWs~~eeLI~v--~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f 136 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILW---KHGELIGMGWSDDEELICV--QKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFF 136 (829)
T ss_pred eeEEEEecc-ccchHHHHh---cCCCeeeecccCCceEEEE--eccceEEEeecch-hhhcccccccccccCceeEEEEe
Confidence 358888874 454444443 2347889999988766665 5999999999763 22222 1 1223334444442
Q ss_pred CCEEEEEecCCeEEEE-ECCCCCcCceeeec---CCCceEEEEEcCCCCE--EEEEeC-C-cEEEEEcCCCCCCCCeeee
Q psy8285 261 GNLLSCGTIGGNILHY-DVRTHSDYPTAITR---EGDVVCGLKWSPNGRY--LASGSN-N-TVKIWDFRQLDAKRPQVNN 332 (507)
Q Consensus 261 ~~~l~~~~~dg~i~i~-d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~--l~~~~d-~-~i~i~d~~~~~~~~~~~~~ 332 (507)
.+-++.-..+|.+.+- +..... ...+.. ....-.|-...++++. +.-.-+ - -..++..... ......+
T Consensus 137 ~~GVavlt~~g~v~~i~~~~~~~--~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~--~~q~~~~ 212 (829)
T KOG2280|consen 137 HNGVAVLTVSGQVILINGVEEPK--LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES--RVQLHAL 212 (829)
T ss_pred cCceEEEecCCcEEEEcCCCcch--hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecc--ccccccc
Confidence 2333344444554433 222211 111111 1111122222222211 111111 0 0111111111 0112222
Q ss_pred cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec--CCCeEEEEECCCC
Q psy8285 333 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT--DSQVTSILWSEQY 392 (507)
Q Consensus 333 ~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~i~~~~~s~~~ 392 (507)
......+..+..||+.+++..-.. .|.|.+-+....+....+.. +.....++|.-+.
T Consensus 213 ~~~~~~~~ki~VS~n~~~laLyt~---~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 213 SWPNSSVVKISVSPNRRFLALYTE---TGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred CCCCceEEEEEEcCCcceEEEEec---CCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 222456788999998877766554 89999998888777776653 3444567776554
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.56 E-value=2.3 Score=35.30 Aligned_cols=180 Identities=13% Similarity=0.120 Sum_probs=96.9
Q ss_pred eeeeCCCCEE-EEE--cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 170 GLDWGYHDTL-AVA--LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 170 ~~~~s~~~~~-~~~--~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
.+..-.+.++ +.+ ....|++||+.+++......+.. ..+..=-...-+.++..-.-.+|.-..+|..+.+++..
T Consensus 50 GL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~---~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~ 126 (262)
T COG3823 50 GLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP---DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGR 126 (262)
T ss_pred ceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCC---ccccccceeeccceEEEEEeccceeEEEChHHhhhhcc
Confidence 3444334433 333 45689999999998766655531 11211111112333332226899999999998888777
Q ss_pred EeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceee-ecCCCc---eEEEEEcCCCCEEEEE---------e-C
Q psy8285 247 LRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAI-TREGDV---VCGLKWSPNGRYLASG---------S-N 312 (507)
Q Consensus 247 ~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~---v~~~~~~~~~~~l~~~---------~-d 312 (507)
+. .++.-+.++.|+..|+.+....+++.-|..+........ .....+ ++.+.|- ||...|-. . +
T Consensus 127 ~~-y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 127 FS-YEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPD 204 (262)
T ss_pred cc-cCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCC
Confidence 65 455667888887778777766777777766543221111 111111 2233332 33332221 1 2
Q ss_pred -CcEEEE-EcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEc
Q psy8285 313 -NTVKIW-DFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 313 -~~i~i~-d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
|.|.-| |+... ...+..-..+..-.+.+++.|++.+++.+|-
T Consensus 205 sGrV~~widlS~L--~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 205 SGRVVAWIDLSGL--LKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred CCcEEEEEEccCC--chhcCccccccccccceeecCcCCeEEEecC
Confidence 333322 33321 1111222234556788999999888888763
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.063 Score=31.84 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=32.5
Q ss_pred cCcceeeeccccccccceeeecccCCcceeeeecCcccceeec
Q psy8285 16 PWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILW 58 (507)
Q Consensus 16 p~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~~~~~v~~~~~ 58 (507)
|++++|+++.. .+++|.++|..+++.+.++..+.....++|
T Consensus 1 pd~~~lyv~~~--~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNS--GSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeC--CCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 68888888876 689999999999999888876555555554
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.24 Score=29.22 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=25.8
Q ss_pred CCeeEEEEccCCC--cEEEEEccCCCCeEEEEeCCCC
Q psy8285 337 SAVKAIAWCPWEP--TLLATGGGICDQTVRLWNSMNG 371 (507)
Q Consensus 337 ~~v~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~ 371 (507)
+.+.+++|+|... .+++.+.. .+.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~--~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEH--QGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEcc--CCeEEEEEcccC
Confidence 4688999998665 57776654 899999999853
|
It contains a characteristic DLL sequence motif. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.36 E-value=2.8 Score=42.38 Aligned_cols=107 Identities=21% Similarity=0.283 Sum_probs=66.7
Q ss_pred eCCEEEEEecCCeEEEEECCCC-----------Cc-------CceeeecCCCceEEEEEc--CCCCEEEEEeC-CcEEEE
Q psy8285 260 NGNLLSCGTIGGNILHYDVRTH-----------SD-------YPTAITREGDVVCGLKWS--PNGRYLASGSN-NTVKIW 318 (507)
Q Consensus 260 ~~~~l~~~~~dg~i~i~d~~~~-----------~~-------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~d-~~i~i~ 318 (507)
+...|+.+..||.|.+|...+- .. ...........+++++++ ...++||++++ ..|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 5678999999999999976310 00 011122234578899998 78888888886 777777
Q ss_pred EcCCCCCCCCeeeecCCCCCeeEEEEccCC--Cc---EEEEEccCCCCeEEEEeC
Q psy8285 319 DFRQLDAKRPQVNNQCHLSAVKAIAWCPWE--PT---LLATGGGICDQTVRLWNS 368 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~---~~~~~~~~~d~~i~i~d~ 368 (507)
-............-..+...|.+++|-++. .. .+++++ ..|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d--I~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATD--ISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEe--ccCcEEEEEE
Confidence 655421111111112266778899998754 11 343333 3888888777
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=94.26 E-value=1.7 Score=40.53 Aligned_cols=141 Identities=13% Similarity=0.178 Sum_probs=89.2
Q ss_pred EEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee
Q psy8285 296 CGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC 375 (507)
Q Consensus 296 ~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 375 (507)
+.+-|...++.+++...|.+.=|-....+..-++..-....++|.++.|++|. +++++-.. +.+|.+++....+...
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDn-kilAVQR~--~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDN-KILAVQRT--SKTVDFCNFIPDNSQL 102 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCc-ceEEEEec--CceEEEEecCCCchhh
Confidence 44556555555555545666677666543334444445567899999999998 55555543 9999999975444322
Q ss_pred ee----ecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC-ccEEEEeeccccceeEEEECCCCCEEEEEe
Q psy8285 376 HV----KTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR-LHLIEELKIHQERILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 376 ~~----~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 443 (507)
.. +.. ..|....|+.. ..+|.. . +.-+.+|-... .+.++..+.|.-.|+-..|.++-+.+.-++
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s-~e~A~i--~-~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSS-TEIAFI--T-DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHHHhccCcceeEEEEEecC-eeEEEE--e-cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 22 222 35899999977 445542 2 44467776543 344555667788888889999877554443
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.18 E-value=2.1 Score=42.72 Aligned_cols=110 Identities=10% Similarity=0.222 Sum_probs=71.7
Q ss_pred CeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeee--cCCCeEEEEEC--CCCCeEEEEeccCCCeEEEEeCC-
Q psy8285 338 AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK--TDSQVTSILWS--EQYRELVTSHGKQDCSLKMWEYP- 412 (507)
Q Consensus 338 ~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~i~~~~~s--~~~~~l~~~~g~~d~~i~v~d~~- 412 (507)
...-+.-+.-+ .+.++.+. ...+.|||.+.+.....-. .+..|..+.|. |+++.+++ -+..+.|.+|--.
T Consensus 31 ~~~li~gss~~-k~a~V~~~--~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLa--VGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 31 NPSLISGSSIK-KIAVVDSS--RSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILA--VGFPHHVLLYTQLR 105 (631)
T ss_pred CcceEeecccC-cEEEEECC--CCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEE--EEcCcEEEEEEccc
Confidence 33444444444 44444432 6789999999887665443 36789999885 78888888 4567788887531
Q ss_pred --------CccEEEEe--eccc-cceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 413 --------RLHLIEEL--KIHQ-ERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 413 --------~~~~~~~~--~~~~-~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
+..++..+ ..|+ .+|.+..|.++|.+++.++ +.+.|++-.
T Consensus 106 ~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 106 YDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred hhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 22334433 3343 5799999999997766554 468887654
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=94.09 E-value=2.1 Score=32.88 Aligned_cols=106 Identities=20% Similarity=0.195 Sum_probs=68.3
Q ss_pred EEEEccCCCeEEEEeCCCCcEEEEeCCCce--------eEEEEeecCccEEEEEe-------eCCEEEEEecCCeEEEEE
Q psy8285 213 CVAWKPRTTDLAVTNTCTEYIDLWHEQEER--------LIQKLRTHMHQVIAMCW-------NGNLLSCGTIGGNILHYD 277 (507)
Q Consensus 213 ~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~-------~~~~l~~~~~dg~i~i~d 277 (507)
.-.|....+.|+++ +..|+|.|++..... .+..+ .-...|++++- ..+.|+.|+ ...+..||
T Consensus 3 iGkfDG~~pcL~~a-T~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYD 79 (136)
T PF14781_consen 3 IGKFDGVHPCLACA-TTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD 79 (136)
T ss_pred EEEeCCCceeEEEE-ecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence 34566667778888 889999999876432 22233 24556777755 245677776 56799999
Q ss_pred CCCCCcCceeeecCCCceEEEEEcC----CCCEEEEEeCCcEEEEEcCCC
Q psy8285 278 VRTHSDYPTAITREGDVVCGLKWSP----NGRYLASGSNNTVKIWDFRQL 323 (507)
Q Consensus 278 ~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~d~~i~i~d~~~~ 323 (507)
+..... ...+.-.+.++++.+-. +..++++|++..|.-||.+..
T Consensus 80 V~~N~d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 80 VENNSD--LFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred cccCch--hhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 987652 23334456677776632 455677777777777776543
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=93.95 E-value=3.3 Score=34.79 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=68.1
Q ss_pred EEEeeC-CEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-C---C---cEEEE-EcCCC-CC
Q psy8285 256 AMCWNG-NLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-N---N---TVKIW-DFRQL-DA 325 (507)
Q Consensus 256 ~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d---~---~i~i~-d~~~~-~~ 325 (507)
.++-.+ +.|+.+.....|.+|++.............-+.|..+.++..|.++++-- + . .+++| +.+.. ..
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~ 101 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEE 101 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhccc
Confidence 333334 55555566788999999954433333334457899999999999999865 2 3 45665 22211 00
Q ss_pred CCCee-eecC---------------------CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC
Q psy8285 326 KRPQV-NNQC---------------------HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG 371 (507)
Q Consensus 326 ~~~~~-~~~~---------------------~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 371 (507)
..++. .+-+ -..++.+++..|-...+++.. ++.+.+|.+...
T Consensus 102 ~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~----~~~l~lf~l~~~ 165 (215)
T PF14761_consen 102 NSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC----GNKLVLFTLKYQ 165 (215)
T ss_pred CCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc----CCEEEEEEEEEE
Confidence 01111 1111 234677888888777777744 688999987543
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.34 Score=28.59 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=31.3
Q ss_pred cCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEE
Q psy8285 346 PWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILW 388 (507)
Q Consensus 346 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~ 388 (507)
|++++++++..+ +++|.++|..+++.+..+........++|
T Consensus 1 pd~~~lyv~~~~--~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSG--SNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCC--CCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 577778887765 89999999999988888776555555554
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=93.89 E-value=9.3 Score=39.74 Aligned_cols=228 Identities=10% Similarity=-0.009 Sum_probs=116.8
Q ss_pred CCeEEEEeCCCCcEEEEeCCCceeEEEEeecCcc--------EEEEEe------------------eCCEEEEEecCCeE
Q psy8285 220 TTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQ--------VIAMCW------------------NGNLLSCGTIGGNI 273 (507)
Q Consensus 220 ~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~------------------~~~~l~~~~~dg~i 273 (507)
+..++++ +.++.|.-.|..+|+.+..+...... ...+++ .+..++.++.|+.+
T Consensus 194 gg~lYv~-t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLC-TPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEE-CCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 4577777 78889999999999888776532211 112222 23478888889999
Q ss_pred EEEECCCCCcCceeeecCCCce-------------EEEEEcC--CCCEEEEEe-----------CCcEEEEEcCCCCCCC
Q psy8285 274 LHYDVRTHSDYPTAITREGDVV-------------CGLKWSP--NGRYLASGS-----------NNTVKIWDFRQLDAKR 327 (507)
Q Consensus 274 ~i~d~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~-----------d~~i~i~d~~~~~~~~ 327 (507)
.-.|.++++.+. .+. ..+.+ ..+.-.| .+..+++|+ +|.|+-+|.+++ +
T Consensus 273 iALDA~TGk~~W-~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG---k 347 (764)
T TIGR03074 273 IALDADTGKLCE-DFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTG---A 347 (764)
T ss_pred EEEECCCCCEEE-Eec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCC---c
Confidence 999999887332 211 11111 0011112 123444442 377999999998 5
Q ss_pred CeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEE
Q psy8285 328 PQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLK 407 (507)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~ 407 (507)
.+-.+..-....... -+.+ .....+++ ..-...-+|.+.+....-..... ..+....+.... ....++|.
T Consensus 348 l~W~~~~g~p~~~~~--~~~g-~~~~~gg~-n~W~~~s~D~~~glvy~ptGn~~----pd~~g~~r~~~~--n~y~~slv 417 (764)
T TIGR03074 348 LVWAWDPGNPDPTAP--PAPG-ETYTRNTP-NSWSVASYDEKLGLVYLPMGNQT----PDQWGGDRTPAD--EKYSSSLV 417 (764)
T ss_pred EeeEEecCCCCcccC--CCCC-CEeccCCC-CccCceEEcCCCCeEEEeCCCcc----ccccCCccccCc--ccccceEE
Confidence 554443110000100 0122 22222211 01133344444433322111100 001011110101 12245677
Q ss_pred EEeCCCccEEEEeeccccceeE---------EEECC-CCC---EEEEEeCCCcEEEEecCCCCccccee
Q psy8285 408 MWEYPRLHLIEELKIHQERILS---------AVLSP-DQT---CVAAASADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 408 v~d~~~~~~~~~~~~~~~~i~~---------~~~s~-~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~ 463 (507)
-.|.++++....++.....+++ +.+.. +|+ .++.++.+|.+++.|-.+++.+...+
T Consensus 418 ALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 418 ALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 7888888888777642211111 12222 553 78889999999999999998876543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=93.88 E-value=5 Score=40.64 Aligned_cols=146 Identities=11% Similarity=0.108 Sum_probs=87.7
Q ss_pred CCEEEEEeCCcEEEEEcCCCCCCC---Ceeeec----------------CCCCCeeEEEEccC-CCcEEEEEccCCCCeE
Q psy8285 304 GRYLASGSNNTVKIWDFRQLDAKR---PQVNNQ----------------CHLSAVKAIAWCPW-EPTLLATGGGICDQTV 363 (507)
Q Consensus 304 ~~~l~~~~d~~i~i~d~~~~~~~~---~~~~~~----------------~~~~~v~~~~~~~~-~~~~~~~~~~~~d~~i 363 (507)
..+++++..+.|.||+++...... +...+. .....|+.|....- +..+++.+.. ||.|
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~D--dG~V 126 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTD--DGDV 126 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEec--CCeE
Confidence 667778888999999886542111 000000 01123444444332 2345555544 9999
Q ss_pred EEEeCCC-------C-------------CeeeeeecCCCeEEEEEC--CCCCeEEEEeccCCCeEEEEeCCCc--cEEE-
Q psy8285 364 RLWNSMN-------G-------------KEKCHVKTDSQVTSILWS--EQYRELVTSHGKQDCSLKMWEYPRL--HLIE- 418 (507)
Q Consensus 364 ~i~d~~~-------~-------------~~~~~~~~~~~i~~~~~s--~~~~~l~~~~g~~d~~i~v~d~~~~--~~~~- 418 (507)
.+|.+++ . ++...+..+...++++++ ...++||+ ++....|.||-.... +...
T Consensus 127 ~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV--SsNs~~VTVFaf~l~~~r~~~~ 204 (717)
T PF08728_consen 127 LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV--SSNSQEVTVFAFALVDERFYHV 204 (717)
T ss_pred EEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE--ecCCceEEEEEEeccccccccc
Confidence 9997531 0 122333445678999998 78888888 666677777655432 1111
Q ss_pred EeeccccceeEEEECCCC---C---EEEEEeCCCcEEEEec
Q psy8285 419 ELKIHQERILSAVLSPDQ---T---CVAAASADETISIWNC 453 (507)
Q Consensus 419 ~~~~~~~~i~~~~~s~~~---~---~l~s~~~dg~i~iw~~ 453 (507)
.-..|...|.+|+|-++. . .|++++-.|.+.+|++
T Consensus 205 ~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 205 PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 011256678899997743 2 7888899999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=4.6 Score=40.50 Aligned_cols=177 Identities=10% Similarity=0.088 Sum_probs=85.3
Q ss_pred eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC-----CcEEEEeCCCceeEEE--EeecCccEEEEE
Q psy8285 186 SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT-----EYIDLWHEQEERLIQK--LRTHMHQVIAMC 258 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~~~v~~~~ 258 (507)
.+..||..+.+......++. .......+.+ ++...+.| +.+ ..+..||..+.+-... +...........
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~-~R~~~~~~~~--~~~lyv~G-G~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~ 387 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIY-PRKNPGVTVF--NNRIYVIG-GIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN 387 (534)
T ss_pred cEEEEeCCCCeeeECCCCCc-ccccceEEEE--CCEEEEEe-CCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE
Confidence 57889988887765544432 2222222222 45566666 544 3577888876543221 111111222333
Q ss_pred eeCCEEEEEecC------CeEEEEECCCCCcCc-eeeecCCCceEEEEEcCCCCEEEEEe-C--C------cEEEEEcCC
Q psy8285 259 WNGNLLSCGTIG------GNILHYDVRTHSDYP-TAITREGDVVCGLKWSPNGRYLASGS-N--N------TVKIWDFRQ 322 (507)
Q Consensus 259 ~~~~~l~~~~~d------g~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-d--~------~i~i~d~~~ 322 (507)
.+++..+.|+.+ ..+..||..+.+-.. ..+...... .++. ..++++++.|+ + + .+.+||..+
T Consensus 388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 388 VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEE-EECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 477777777732 357889987654111 111111111 1222 23566666665 2 1 288889876
Q ss_pred CCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC---CCeEEEEeCCCCC
Q psy8285 323 LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC---DQTVRLWNSMNGK 372 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~ 372 (507)
..-. .+............+.+ ++ .+++.|+... ...+.+||..+.+
T Consensus 466 ~~W~-~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 466 NKWT-ELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred Ccee-eCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCCCE
Confidence 5211 11111111111112222 33 6777665311 2467788876654
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.71 E-value=3 Score=42.82 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=19.2
Q ss_pred CCeeEEEEccCCCcEEEEEccCCCCeEEEEeC
Q psy8285 337 SAVKAIAWCPWEPTLLATGGGICDQTVRLWNS 368 (507)
Q Consensus 337 ~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~ 368 (507)
-.|..+..+|+|..++.+| ...|.|..+
T Consensus 85 f~v~~i~~n~~g~~lal~G----~~~v~V~~L 112 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVG----PRGVVVLEL 112 (717)
T ss_pred eeEEEEEECCCCCEEEEEc----CCcEEEEEe
Confidence 4688899999996666555 455555555
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=4.4 Score=39.87 Aligned_cols=175 Identities=11% Similarity=-0.021 Sum_probs=84.0
Q ss_pred eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC--CcEEEEeCCCceeEE--EEeecCccEEEEEeeC
Q psy8285 186 SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT--EYIDLWHEQEERLIQ--KLRTHMHQVIAMCWNG 261 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d--g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~ 261 (507)
.+..||..+++......++. .......+. -++...++| +.+ ..+..||..+.+-.. .+............++
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~-~r~~~~~v~--~~~~iYviG-G~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g 363 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNS-PRLYASGVP--ANNKLYVVG-GLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINN 363 (480)
T ss_pred eEEEEECCCCEEEECCCCCc-hhhcceEEE--ECCEEEEEC-CcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECC
Confidence 57789988877665555432 222222222 355555666 443 468888876553322 1221122223344578
Q ss_pred CEEEEEecCC---eEEEEECCCCCcCce-eeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCC
Q psy8285 262 NLLSCGTIGG---NILHYDVRTHSDYPT-AITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLS 337 (507)
Q Consensus 262 ~~l~~~~~dg---~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 337 (507)
+..+.|+.++ .+..||.++..-... .+....... +++ .-++++.+.| |.+.+||.++..- ..+..+.....
T Consensus 364 ~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~G--G~~e~ydp~~~~W-~~~~~m~~~r~ 438 (480)
T PHA02790 364 VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVG--RNAEFYCESSNTW-TLIDDPIYPRD 438 (480)
T ss_pred EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEEC--CceEEecCCCCcE-eEcCCCCCCcc
Confidence 8888887654 467888876531110 011111111 121 2356666666 4567888876421 11111211112
Q ss_pred CeeEEEEccCCCcEEEEEccCC---CCeEEEEeCCCCC
Q psy8285 338 AVKAIAWCPWEPTLLATGGGIC---DQTVRLWNSMNGK 372 (507)
Q Consensus 338 ~v~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~ 372 (507)
....+.+ ++ .+++.|+... -..+..||..+++
T Consensus 439 ~~~~~v~--~~-~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 439 NPELIIV--DN-KLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred ccEEEEE--CC-EEEEECCcCCCcccceEEEEECCCCe
Confidence 2222222 33 6777775311 1346666665543
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.30 E-value=1.9 Score=40.90 Aligned_cols=135 Identities=13% Similarity=0.148 Sum_probs=86.4
Q ss_pred EEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCC-------eEEEEeCCCCcEEEEeCC-CceeEEEEee---
Q psy8285 181 VALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTT-------DLAVTNTCTEYIDLWHEQ-EERLIQKLRT--- 249 (507)
Q Consensus 181 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~~dg~i~iwd~~-~~~~~~~~~~--- 249 (507)
++....++-.|++.|+......+ +.. + -+.|.|..+ .-++| -.+..|.-.|.+ .+..+...+.
T Consensus 486 g~~~~kLykmDIErGkvveeW~~---~dd-v-vVqy~p~~kf~qmt~eqtlvG-lS~~svFrIDPR~~gNKi~v~esKdY 559 (776)
T COG5167 486 GGERDKLYKMDIERGKVVEEWDL---KDD-V-VVQYNPYFKFQQMTDEQTLVG-LSDYSVFRIDPRARGNKIKVVESKDY 559 (776)
T ss_pred CCCcccceeeecccceeeeEeec---CCc-c-eeecCCchhHHhcCccceEEe-ecccceEEecccccCCceeeeeehhc
Confidence 34556777778888887766665 333 3 566777531 22334 344445444544 2322222221
Q ss_pred -cCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCC
Q psy8285 250 -HMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQ 322 (507)
Q Consensus 250 -~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~ 322 (507)
......+..- ...++|+++..|.|++||--... ....+.+....|..+..+.+|+++++.+...+.+-|++-
T Consensus 560 ~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r-AKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 560 KTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPI 633 (776)
T ss_pred cccccccccccccCceEEEecCCCceeeehhhcch-hhhcCcccccceeeeEeecCCcEEEEeecceEEEEeccc
Confidence 1111222222 57799999999999999965443 456677888899999999999999988888888888764
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.28 E-value=4.5 Score=38.17 Aligned_cols=124 Identities=14% Similarity=0.104 Sum_probs=63.7
Q ss_pred eEEEEECCCCC-c--CceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEE-EcCCCC----CCCCee-eecC----CCCC
Q psy8285 272 NILHYDVRTHS-D--YPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIW-DFRQLD----AKRPQV-NNQC----HLSA 338 (507)
Q Consensus 272 ~i~i~d~~~~~-~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~-d~~~~~----~~~~~~-~~~~----~~~~ 338 (507)
.|.+++-..+. . ....+...-...+.+++.+++ +++ +....|..+ |..... ..+.+. .+.. +...
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~ 125 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHS 125 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccc
Confidence 66666543321 1 122333333456789999988 444 443445444 443211 111121 1221 1344
Q ss_pred eeEEEEccCCCcEEEEEccC----------------CCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEE
Q psy8285 339 VKAIAWCPWEPTLLATGGGI----------------CDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVT 397 (507)
Q Consensus 339 v~~~~~~~~~~~~~~~~~~~----------------~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (507)
...+.|.|||..+++.++.+ ..+.|.-++...++....-........++|+|+|+.+++
T Consensus 126 ~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 126 LNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred ccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEE
Confidence 77899999985444433210 014456666555443322222345678999999988776
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.20 E-value=5.6 Score=35.06 Aligned_cols=155 Identities=10% Similarity=0.004 Sum_probs=103.8
Q ss_pred cCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCC-CceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCC
Q psy8285 250 HMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREG-DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKR 327 (507)
Q Consensus 250 ~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~ 327 (507)
-..-+..+.+.+++...+..+.-++|.|+.+...+...-.-.. +.-+++.. .|++..++. +.-+.+.|+.+...+.
T Consensus 85 ~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 85 ARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 3455677778899999999999999999998875443322222 33444444 578888887 7667788998876555
Q ss_pred CeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee---eeecCCCeEEEEECCCCCeEEEEeccCCC
Q psy8285 328 PQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC---HVKTDSQVTSILWSEQYRELVTSHGKQDC 404 (507)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~---~~~~~~~i~~~~~s~~~~~l~~~~g~~d~ 404 (507)
..-+..........++.| |++-+++.- |+-+.+.|+.+..... .......+.++..+++.-+++. . +.
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~---d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vv--y--~e 233 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWR---DGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVV--Y--DE 233 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEe---CCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEE--c--cc
Confidence 555555555555667776 434555444 8889999987764333 3333347888999988888777 3 33
Q ss_pred eEEEEeCCCcc
Q psy8285 405 SLKMWEYPRLH 415 (507)
Q Consensus 405 ~i~v~d~~~~~ 415 (507)
-+.+-|..+.+
T Consensus 234 gvlivd~s~~s 244 (370)
T COG5276 234 GVLIVDVSGPS 244 (370)
T ss_pred ceEEEecCCCC
Confidence 46666766554
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.92 Score=38.93 Aligned_cols=63 Identities=17% Similarity=0.104 Sum_probs=44.9
Q ss_pred ccCCCcEEEEEccCCCCeEEEEeCCCCCeeeee---------------ecCCCeEEEEECCCCCeEEEEeccCCCeEEEE
Q psy8285 345 CPWEPTLLATGGGICDQTVRLWNSMNGKEKCHV---------------KTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409 (507)
Q Consensus 345 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~---------------~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~ 409 (507)
...+.++++... +|.+++||+.+++.+..- .....|..+.++.+|.-+++. .+|..+.|
T Consensus 19 ~~~~~~Ll~iT~---~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l---sng~~y~y 92 (219)
T PF07569_consen 19 ECNGSYLLAITS---SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL---SNGDSYSY 92 (219)
T ss_pred EeCCCEEEEEeC---CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE---eCCCEEEe
Confidence 345667777776 999999999988754322 122568888888888877773 36778888
Q ss_pred eCCC
Q psy8285 410 EYPR 413 (507)
Q Consensus 410 d~~~ 413 (507)
+..-
T Consensus 93 ~~~L 96 (219)
T PF07569_consen 93 SPDL 96 (219)
T ss_pred cccc
Confidence 8643
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=92.73 E-value=1.9 Score=40.85 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=54.8
Q ss_pred eecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEc---cC----------------
Q psy8285 288 ITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWC---PW---------------- 347 (507)
Q Consensus 288 ~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~---~~---------------- 347 (507)
+......+.++..+|++++.|+..+ |.|.++|+..+ ..++.+++-.+.- +.|- ..
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~---~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARG---IVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSR 377 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCC---hhhhhhccCccce--EEEEEeecccccccccccccCCCCc
Confidence 3445566889999999888777655 99999999988 5555555543321 1111 00
Q ss_pred -CCcEEEEEccCCCCeEEEEeCCCCCeeeeeec
Q psy8285 348 -EPTLLATGGGICDQTVRLWNSMNGKEKCHVKT 379 (507)
Q Consensus 348 -~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 379 (507)
...|++-.- .-|.|.||.++.|..+..+..
T Consensus 378 ~~l~LvIyap--rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 378 FALFLVIYAP--RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ceEEEEEEec--cCCeEEEEecCCCCEEEEEEe
Confidence 112223232 278999999998887766654
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.24 E-value=9 Score=37.72 Aligned_cols=182 Identities=10% Similarity=0.012 Sum_probs=81.2
Q ss_pred eCCEEEEEecCC-----eEEEEECCCCCcC-ceeeecCCCceEEEEEcCCCCEEEEEe-C--CcEEEEEcCCCCCCCCee
Q psy8285 260 NGNLLSCGTIGG-----NILHYDVRTHSDY-PTAITREGDVVCGLKWSPNGRYLASGS-N--NTVKIWDFRQLDAKRPQV 330 (507)
Q Consensus 260 ~~~~l~~~~~dg-----~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-d--~~i~i~d~~~~~~~~~~~ 330 (507)
++.+++.|+.++ .+..||..+..-. ...+....... +++ .-++.+.+.|+ + ..+..||.....- ..+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W-~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAW-VNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeE-EECC
Confidence 556667776543 4667887765311 11111111111 122 23677777776 3 5688888765311 1111
Q ss_pred eecCCCCCeeEEEEccCCCcEEEEEccCC-CCeEEEEeCCCCCeee--eeecCCCeEEEEECCCCCeEEEEeccCCCeEE
Q psy8285 331 NNQCHLSAVKAIAWCPWEPTLLATGGGIC-DQTVRLWNSMNGKEKC--HVKTDSQVTSILWSEQYRELVTSHGKQDCSLK 407 (507)
Q Consensus 331 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~--~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~ 407 (507)
.+............ + ..+++.|+... ...+..||.++.+-.. .+.....-.++ ..-+++..+. | |.+.
T Consensus 348 ~l~~~r~~~~~~~~--~-g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~-~~~~~~IYv~--G---G~~e 418 (480)
T PHA02790 348 SLLKPRCNPAVASI--N-NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCA-LVFGRRLFLV--G---RNAE 418 (480)
T ss_pred CCCCCCcccEEEEE--C-CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceE-EEECCEEEEE--C---CceE
Confidence 11111111112222 3 37777776311 2457788877654222 11111111111 2234555555 4 3567
Q ss_pred EEeCCCc--cEEEEeeccccceeEEEECCCCCEEEEEeCC-----CcEEEEecCC
Q psy8285 408 MWEYPRL--HLIEELKIHQERILSAVLSPDQTCVAAASAD-----ETISIWNCFP 455 (507)
Q Consensus 408 v~d~~~~--~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~ 455 (507)
+||..+. +.+..+.........+. -+++..+.|+.+ ..+..||..+
T Consensus 419 ~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 419 FYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCC
Confidence 8887654 23333322122222222 266677777654 2355555443
|
|
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.022 Score=52.78 Aligned_cols=140 Identities=18% Similarity=0.236 Sum_probs=96.9
Q ss_pred EEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee
Q psy8285 297 GLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC 375 (507)
Q Consensus 297 ~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 375 (507)
...|-|.+.-++.++ +..+..||-... ...... ..+....++|..++..+++.+.. .+.+.+||+.+.....
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq----~~le~n-~tg~aldm~wDkegdvlavlAek--~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQ----VILELN-PTGKALDMAWDKEGDVLAVLAEK--TGPIYLWDVNSEYTQQ 111 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcc----eecccC-CchhHhhhhhccccchhhhhhhc--CCCeeechhhhhhHHH
Confidence 356777665566665 788888886542 222222 34556688898888877776654 8899999997654322
Q ss_pred -eeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCC
Q psy8285 376 -HVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE 446 (507)
Q Consensus 376 -~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg 446 (507)
...+...-.-+.|++.+..++. |...|.+.|++..+.+.+...-.|..++++++|.+.+.. +.++.|.
T Consensus 112 LE~gg~~s~sll~wsKg~~el~i--g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~v-il~dcd~ 180 (615)
T KOG2247|consen 112 LESGGTSSKSLLAWSKGTPELVI--GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYV-ILCDCDN 180 (615)
T ss_pred HhccCcchHHHHhhccCCccccc--cccccceEEEeccchhhhhhhcccccceeEEEeccccee-eecCcHH
Confidence 1222222233789999999999 888999999998887776666558999999999987654 3444443
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=92.03 E-value=2.9 Score=36.37 Aligned_cols=134 Identities=13% Similarity=0.160 Sum_probs=72.4
Q ss_pred eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCC--cEEEEeCCCceeEEEEeecCccEE-------E
Q psy8285 186 SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTE--YIDLWHEQEERLIQKLRTHMHQVI-------A 256 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~-------~ 256 (507)
.-.+||+.+++...+... .+-.+.+-.+.+||+.|.++|..+| .+++++..+............... .
T Consensus 47 ~s~~yD~~tn~~rpl~v~---td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~ 123 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQ---TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTA 123 (243)
T ss_pred EEEEEecCCCcEEeccCC---CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccc
Confidence 345799998887654332 3445556678899999999866565 588887654110001111111111 1
Q ss_pred EEe-eCCEEEEEecCCe-EEEEECCCCCcCcee---eec----C-CCceEEEEEcCCCCEEEEEeCCcEEEEEcCCC
Q psy8285 257 MCW-NGNLLSCGTIGGN-ILHYDVRTHSDYPTA---ITR----E-GDVVCGLKWSPNGRYLASGSNNTVKIWDFRQL 323 (507)
Q Consensus 257 ~~~-~~~~l~~~~~dg~-i~i~d~~~~~~~~~~---~~~----~-~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~ 323 (507)
... ||+.|+.|+.... ...|.-......... +.. . ..----+...|+|++++.+..+ -.|||....
T Consensus 124 ~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-s~i~d~~~n 199 (243)
T PF07250_consen 124 TTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-SIIYDYKTN 199 (243)
T ss_pred eECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC-cEEEeCCCC
Confidence 111 8999999887743 334443221111111 110 0 1111235567899999888853 346688765
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=91.69 E-value=18 Score=37.36 Aligned_cols=79 Identities=10% Similarity=0.107 Sum_probs=53.2
Q ss_pred CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC----------ceeE---EEE--------eecCccEEEEEe-----eC
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE----------ERLI---QKL--------RTHMHQVIAMCW-----NG 261 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~----------~~~~---~~~--------~~~~~~v~~~~~-----~~ 261 (507)
.-.|..+.++|+|.+++.. +..| |.|..+.. ++.. +.+ ..+...|..+.| ++
T Consensus 84 ~f~v~~i~~n~~g~~lal~-G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALV-GPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred ceeEEEEEECCCCCEEEEE-cCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 4468899999999999998 5655 44433321 1111 111 123457888999 47
Q ss_pred CEEEEEecCCeEEEEECCCCCcCceee
Q psy8285 262 NLLSCGTIGGNILHYDVRTHSDYPTAI 288 (507)
Q Consensus 262 ~~l~~~~~dg~i~i~d~~~~~~~~~~~ 288 (507)
..|+.-+.|+++++||+.....+...+
T Consensus 162 ~~l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred CeEEEEecCCEEEEEecCCCCCCeEEE
Confidence 899999999999999998665444433
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=90.25 E-value=7.3 Score=37.31 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=10.8
Q ss_pred CeeEEEEccCCCcEEEEEc
Q psy8285 338 AVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 338 ~v~~~~~~~~~~~~~~~~~ 356 (507)
.|..+..++.|..++.+|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~ 123 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGI 123 (741)
T ss_pred EEEEEEecCCCceEEEecC
Confidence 3555666666655555554
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.19 E-value=1.1 Score=41.57 Aligned_cols=165 Identities=13% Similarity=0.086 Sum_probs=91.8
Q ss_pred eecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeee-cCCCC----Cee-EEEEccCCCcEEEEEccCCCC
Q psy8285 288 ITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNN-QCHLS----AVK-AIAWCPWEPTLLATGGGICDQ 361 (507)
Q Consensus 288 ~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~----~v~-~~~~~~~~~~~~~~~~~~~d~ 361 (507)
+......+..+-..|||+.+..-+..++.++++.+... ....+ ....+ .|+ .+..-..|..+++... ||
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l--~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~---dG 290 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSL--QIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE---DG 290 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecCCeEEEEeeccccc--chhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC---CC
Confidence 44445667788899999999887778888888876411 11111 11111 122 1111223444555443 88
Q ss_pred eEEEE-eCCCCCe-----eeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECC
Q psy8285 362 TVRLW-NSMNGKE-----KCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSP 434 (507)
Q Consensus 362 ~i~i~-d~~~~~~-----~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~ 434 (507)
-|.-| |.+.+.. ++.++.. .++..+.-..+.+-++. -+.+|.+.++.....+.+.. ..-...+.-+++||
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~--l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp 367 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYS--LYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSP 367 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEE--EcCCCceeeeecccCcceeh-hhhhcCcceeeeCc
Confidence 87766 5544321 1111111 23333322223344444 46788888877544433322 22223566789999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCCcccc
Q psy8285 435 DQTCVAAASADETISIWNCFPRDKKRK 461 (507)
Q Consensus 435 ~~~~l~s~~~dg~i~iw~~~~~~~~~~ 461 (507)
.+.+|++- +.|.++++.+++..+.-.
T Consensus 368 ~~~~Ll~e-~~gki~~~~l~Nr~Peis 393 (733)
T COG4590 368 NQAYLLSE-DQGKIRLAQLENRNPEIS 393 (733)
T ss_pred ccchheee-cCCceEEEEecCCCCCcc
Confidence 99988754 357899999988766543
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=90.09 E-value=11 Score=31.91 Aligned_cols=149 Identities=11% Similarity=0.102 Sum_probs=83.8
Q ss_pred EEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC---eEEEE---eCC--
Q psy8285 298 LKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ---TVRLW---NSM-- 369 (507)
Q Consensus 298 ~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~---~i~i~---d~~-- 369 (507)
++-.+.+.++++++...|.+|++.. +..+.+..+. .-+.|..+.++..|+++++.-...... .+|+| ...
T Consensus 23 ~c~~g~d~Lfva~~g~~Vev~~l~~-~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~ 100 (215)
T PF14761_consen 23 VCCGGPDALFVAASGCKVEVYDLEQ-EECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE 100 (215)
T ss_pred eeccCCceEEEEcCCCEEEEEEccc-CCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence 3333433444444468899999983 3335666665 458899999999998888776543334 56664 322
Q ss_pred CCCeee-----------------------eeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE-EE-----Ee
Q psy8285 370 NGKEKC-----------------------HVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL-IE-----EL 420 (507)
Q Consensus 370 ~~~~~~-----------------------~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~-~~-----~~ 420 (507)
..+++. .+.....+.+++-.|-..-|++ |+ ++.+.+|.+..... .. .+
T Consensus 101 ~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV--g~-~~~l~lf~l~~~~~~~~~~~~lDF 177 (215)
T PF14761_consen 101 ENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV--GC-GNKLVLFTLKYQTIQSEKFSFLDF 177 (215)
T ss_pred cCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE--Ec-CCEEEEEEEEEEEEecccccEEec
Confidence 111111 1111235677787777666666 33 67899998754332 11 11
Q ss_pred e----cc-cc-ceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 421 K----IH-QE-RILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 421 ~----~~-~~-~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
. .| .+ ....+++ -+.++|..+. -.+++.++.
T Consensus 178 e~~l~~~~~~~~p~~v~i--c~~yiA~~s~-~ev~Vlkl~ 214 (215)
T PF14761_consen 178 ERSLIDHIDNFKPTQVAI--CEGYIAVMSD-LEVLVLKLE 214 (215)
T ss_pred hhhhhheecCceEEEEEE--EeeEEEEecC-CEEEEEEEe
Confidence 1 11 11 1233444 3457776654 467777653
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=90.08 E-value=12 Score=32.70 Aligned_cols=240 Identities=11% Similarity=-0.034 Sum_probs=139.0
Q ss_pred CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCc
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYP 285 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~ 285 (507)
...-..++-.|||..-+++ ...+.|--.|..+++....--+....-..+.. |+..-++-+.. -|.-.|-++.+...
T Consensus 61 G~ap~dvapapdG~VWft~-qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTA-QGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred CCCccccccCCCCceEEec-CccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE
Confidence 3455677888899888887 77888888888888776554443333334443 44443333322 44445554443211
Q ss_pred ee--eecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecC-CCCCeeEEEEccCCCcEEEEEccCCCCe
Q psy8285 286 TA--ITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQC-HLSAVKAIAWCPWEPTLLATGGGICDQT 362 (507)
Q Consensus 286 ~~--~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~d~~ 362 (507)
.. ............|.+.|++-.++..|.---.|... ..+..+.. .....+.|+..|+|+-.+++-. +..
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~----~~i~vfpaPqG~gpyGi~atpdGsvwyasla---gna 211 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR----NVISVFPAPQGGGPYGICATPDGSVWYASLA---GNA 211 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccccceecCccc----CceeeeccCCCCCCcceEECCCCcEEEEecc---ccc
Confidence 11 12234457788899999988887632221222222 22333322 2345678899999976666544 677
Q ss_pred EEEEeCCCCCeeeeeec---CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc-EEEEeeccccceeEEEECCCCCE
Q psy8285 363 VRLWNSMNGKEKCHVKT---DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH-LIEELKIHQERILSAVLSPDQTC 438 (507)
Q Consensus 363 i~i~d~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~s~~~~~ 438 (507)
|-..|..++.....-.. +.....+--+|.|+.-++ -...+.++.||-.... ....+.+....-.++.....++.
T Consensus 212 iaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wit--twg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grV 289 (353)
T COG4257 212 IARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWIT--TWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRV 289 (353)
T ss_pred eEEcccccCCcceecCCCcccccccccccCccCcEEEe--ccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcE
Confidence 77778776632221111 133455666778887777 4567788888865432 12234444444566667666766
Q ss_pred EEEEeCCCcEEEEecCCCCc
Q psy8285 439 VAAASADETISIWNCFPRDK 458 (507)
Q Consensus 439 l~s~~~dg~i~iw~~~~~~~ 458 (507)
..+--..|.|.-+|-++...
T Consensus 290 W~sea~agai~rfdpeta~f 309 (353)
T COG4257 290 WLSEADAGAIGRFDPETARF 309 (353)
T ss_pred EeeccccCceeecCcccceE
Confidence 66555556777777665443
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=90.00 E-value=5.4 Score=28.38 Aligned_cols=39 Identities=3% Similarity=-0.051 Sum_probs=31.3
Q ss_pred CCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEE
Q psy8285 360 DQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTS 398 (507)
Q Consensus 360 d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 398 (507)
+|.+.-||..+++....+..-.-.+.+++++|+.+++++
T Consensus 36 ~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp -EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred CcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence 788999999998876666666778999999999998884
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.037 Score=51.38 Aligned_cols=137 Identities=10% Similarity=0.141 Sum_probs=93.3
Q ss_pred CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE
Q psy8285 337 SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL 416 (507)
Q Consensus 337 ~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~ 416 (507)
.......|-|.+..+++++. +..+..|| +.++........+....++|..++..+++. .-..+.+.+||+.+..-
T Consensus 35 v~pi~~~w~~e~~nlavaca---~tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavl-Aek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACA---NTIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVL-AEKTGPIYLWDVNSEYT 109 (615)
T ss_pred cccceeeEecCCCceehhhh---hhHHHhhh-hhcceecccCCchhHhhhhhccccchhhhh-hhcCCCeeechhhhhhH
Confidence 34446778888888877776 88888898 455555555555667788999988887775 56788999999875321
Q ss_pred E-EEeec-cccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccccee-ecCCCcceEEeeccCcc
Q psy8285 417 I-EELKI-HQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR-QVGSGSSLEFAILKQPV 480 (507)
Q Consensus 417 ~-~~~~~-~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 480 (507)
. .++.+ |.... +.|++....++.+...|.+.|++..+.....+.. ....+..+.+.+....+
T Consensus 110 qqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 110 QQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI 174 (615)
T ss_pred HHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence 1 11111 22222 7899988888888899999999988766655443 44445556665555443
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=89.81 E-value=16 Score=33.42 Aligned_cols=229 Identities=11% Similarity=0.052 Sum_probs=117.0
Q ss_pred EEEEEcCCeEEEEECCC--CceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee------------
Q psy8285 178 TLAVALDTSVYTWNTKT--NKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL------------ 243 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~------------ 243 (507)
.+..|.+..+++.+... .+..++. +...|+++...+..+.|++-++....++.+++..-..
T Consensus 15 ~lL~GTe~Gly~~~~~~~~~~~~kl~-----~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 15 WLLVGTEEGLYVLNISDQPGTLEKLI-----GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred EEEEEeCCceEEEEcccCCCCeEEec-----CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 45555555577777654 3344443 5668999999998888877634555699999843221
Q ss_pred ---EEEEeecCccEEEEEe-eCC--EEEEEecCCeEEEEECCCCCcCceeee-------cCCCceEEEEEcCC--CCEEE
Q psy8285 244 ---IQKLRTHMHQVIAMCW-NGN--LLSCGTIGGNILHYDVRTHSDYPTAIT-------REGDVVCGLKWSPN--GRYLA 308 (507)
Q Consensus 244 ---~~~~~~~~~~v~~~~~-~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~--~~~l~ 308 (507)
....-.+......+.. .++ .++++....+|.++............. ....++..+..+++ ...+.
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 0111123333333333 222 334444456777765543211111111 11223333333333 45677
Q ss_pred EEeC-CcEEEEEcCC--CCCCCCeee--ecCCC-CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCee--eeeecC
Q psy8285 309 SGSN-NTVKIWDFRQ--LDAKRPQVN--NQCHL-SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK--CHVKTD 380 (507)
Q Consensus 309 ~~~d-~~i~i~d~~~--~~~~~~~~~--~~~~~-~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~~ 380 (507)
.|++ +...++++.. .+....... ..... .++..... +++ .++.+- |....+.|....+.. ..+.-.
T Consensus 170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~-e~Llc~----~~~~v~Vn~~G~~~~r~~~l~w~ 243 (302)
T smart00036 170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRD-EFLLCY----DEFGVFVNLYGKRRSRNPILHWE 243 (302)
T ss_pred EEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCC-eEEEEE----CcEEEEEeCCCCccccceEEEcC
Confidence 7775 3566666643 111111000 11111 33333333 344 344433 556666665431222 223334
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI 422 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~ 422 (507)
..+.++++. ..+|++. .+..|.|+++.+++.++++..
T Consensus 244 ~~p~~~~~~--~pyll~~---~~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 244 FMPESFAYH--SPYLLAF---HDNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred CcccEEEEE--CCEEEEE---cCCcEEEEECCCCceEEEEec
Confidence 556677776 4677763 366799999999998888863
|
Unpublished observations. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=89.77 E-value=2.9 Score=34.43 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=26.3
Q ss_pred cceeEEEECCCC------CEEEEEeCCCcEEEEecCCC
Q psy8285 425 ERILSAVLSPDQ------TCVAAASADETISIWNCFPR 456 (507)
Q Consensus 425 ~~i~~~~~s~~~------~~l~s~~~dg~i~iw~~~~~ 456 (507)
..+.+++|||.| ..|++.+.++.|.||.-...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 378999999943 36788999999999997754
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=89.44 E-value=1.6 Score=25.12 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=21.8
Q ss_pred CCCCeeEEEEccCCCcEEEEEccCCC--CeEEEE
Q psy8285 335 HLSAVKAIAWCPWEPTLLATGGGICD--QTVRLW 366 (507)
Q Consensus 335 ~~~~v~~~~~~~~~~~~~~~~~~~~d--~~i~i~ 366 (507)
....-....|+|||+.++.++.. + |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~--~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNR--NDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEEC--T--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecC--CCCCCcCEE
Confidence 45567889999999999888765 4 555555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >KOG1900|consensus | Back alignment and domain information |
|---|
Probab=89.32 E-value=12 Score=40.20 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=91.5
Q ss_pred EEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe---e--------CCEEEEEecCCeEEEEECCC
Q psy8285 212 SCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW---N--------GNLLSCGTIGGNILHYDVRT 280 (507)
Q Consensus 212 ~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~--------~~~l~~~~~dg~i~i~d~~~ 280 (507)
..|-+-|.=.+.-.+ .|..+.+|+.+++.....+.+-...|..+.. . ...|+.++ --.|.++-+.-
T Consensus 82 ~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~ 158 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSF 158 (1311)
T ss_pred eeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEe
Confidence 344444543333333 5999999999998877777777777777665 1 23444444 34555554432
Q ss_pred CCc--Cce------eeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEc--CCC---C-C-------------CCCeeeec
Q psy8285 281 HSD--YPT------AITREGDVVCGLKWSPNGRYLASGSNNTVKIWDF--RQL---D-A-------------KRPQVNNQ 333 (507)
Q Consensus 281 ~~~--~~~------~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~--~~~---~-~-------------~~~~~~~~ 333 (507)
.+. ... .+......|.|+....+|+.+.+|.||.++=.-. ..+ . . ...+..+.
T Consensus 159 ~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~ 238 (1311)
T KOG1900|consen 159 DEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP 238 (1311)
T ss_pred ccccCcccccccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC
Confidence 211 111 1223356788999889999999999885432222 211 0 0 00111222
Q ss_pred -CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC
Q psy8285 334 -CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN 370 (507)
Q Consensus 334 -~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 370 (507)
.+..+|..+..... +.++.+-++ .++|++||+..
T Consensus 239 ~~~~dpI~qi~ID~S-R~IlY~lse--k~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 239 GSSKDPIRQITIDNS-RNILYVLSE--KGTVSAYDIGG 273 (1311)
T ss_pred CCCCCcceeeEeccc-cceeeeecc--CceEEEEEccC
Confidence 46678999999764 456655544 89999999976
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=89.30 E-value=12 Score=32.64 Aligned_cols=142 Identities=13% Similarity=0.200 Sum_probs=76.0
Q ss_pred EEEEECCCCCcCceeeec-CCCceEEEEEcCCCCEEEEEeC----CcEEEEEcCCCCCCCCeeee---cCCCCCeeEEEE
Q psy8285 273 ILHYDVRTHSDYPTAITR-EGDVVCGLKWSPNGRYLASGSN----NTVKIWDFRQLDAKRPQVNN---QCHLSAVKAIAW 344 (507)
Q Consensus 273 i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~d----~~i~i~d~~~~~~~~~~~~~---~~~~~~v~~~~~ 344 (507)
-.+||+.+.+ .+.+.- ......+-.+.+||+++.+|++ ..+++++............. ......-....-
T Consensus 48 s~~yD~~tn~--~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 48 SVEYDPNTNT--FRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEecCCCc--EEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 3478888765 222222 2222333457789999999983 56888886541000011100 112223344555
Q ss_pred ccCCCcEEEEEccCCCCeEEEEeCCCC-C-eee--eee------cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc
Q psy8285 345 CPWEPTLLATGGGICDQTVRLWNSMNG-K-EKC--HVK------TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 345 ~~~~~~~~~~~~~~~d~~i~i~d~~~~-~-~~~--~~~------~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~ 414 (507)
-|||+.+++.|.. ..+..+|.-... . ... .+. .....-.+...|+|+.++. +.. .-.|||..+.
T Consensus 126 L~DG~vlIvGG~~--~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~--an~--~s~i~d~~~n 199 (243)
T PF07250_consen 126 LPDGRVLIVGGSN--NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIF--ANR--GSIIYDYKTN 199 (243)
T ss_pred CCCCCEEEEeCcC--CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEE--EcC--CcEEEeCCCC
Confidence 6788655554442 455666665321 1 111 111 0122346777899999988 433 4567788887
Q ss_pred cEEEEeec
Q psy8285 415 HLIEELKI 422 (507)
Q Consensus 415 ~~~~~~~~ 422 (507)
+.++.+..
T Consensus 200 ~v~~~lP~ 207 (243)
T PF07250_consen 200 TVVRTLPD 207 (243)
T ss_pred eEEeeCCC
Confidence 77666653
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=88.99 E-value=15 Score=32.19 Aligned_cols=184 Identities=12% Similarity=0.070 Sum_probs=105.5
Q ss_pred eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCe
Q psy8285 260 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAV 339 (507)
Q Consensus 260 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v 339 (507)
||..-+++...+.|--.|..+++. ...-.+....-..+..-|||..-++-+..-|.-.|.++....+-....+......
T Consensus 72 dG~VWft~qg~gaiGhLdP~tGev-~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nl 150 (353)
T COG4257 72 DGAVWFTAQGTGAIGHLDPATGEV-ETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANL 150 (353)
T ss_pred CCceEEecCccccceecCCCCCce-EEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCcc
Confidence 566666777677777777777762 2233334445566777888876665443355555655431111111122234567
Q ss_pred eEEEEccCCCcEEEEEccCC-------CCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 340 KAIAWCPWEPTLLATGGGIC-------DQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
....|.+.| ++..++..-. .+.|++|+... ......++..|+|..-++ .-.++.|-..|..
T Consensus 151 et~vfD~~G-~lWFt~q~G~yGrLdPa~~~i~vfpaPq---------G~gpyGi~atpdGsvwya--slagnaiaridp~ 218 (353)
T COG4257 151 ETAVFDPWG-NLWFTGQIGAYGRLDPARNVISVFPAPQ---------GGGPYGICATPDGSVWYA--SLAGNAIARIDPF 218 (353)
T ss_pred cceeeCCCc-cEEEeeccccceecCcccCceeeeccCC---------CCCCcceEECCCCcEEEE--eccccceEEcccc
Confidence 788899988 4555554101 12334444321 235678889999998887 4566777777766
Q ss_pred CccE--EEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 413 RLHL--IEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 413 ~~~~--~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
++.. +..-......-+.+--+|.|+.-++....+.+..+|....
T Consensus 219 ~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 219 AGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred cCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence 6522 1111121223445556778888888777777777776543
|
|
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=88.41 E-value=0.74 Score=46.61 Aligned_cols=184 Identities=11% Similarity=0.074 Sum_probs=100.3
Q ss_pred cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCC-CeEEEEeCCCCcEEEEeCC--CceeEEEE-----eecCccE
Q psy8285 183 LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRT-TDLAVTNTCTEYIDLWHEQ--EERLIQKL-----RTHMHQV 254 (507)
Q Consensus 183 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~dg~i~iwd~~--~~~~~~~~-----~~~~~~v 254 (507)
..+.+++-+...... ...-.+| ..+.+-.+.|.... ..+. -.-|.+.|||+. .|+....+ ......+
T Consensus 109 ~~~~vrvaN~~~sm~-~~~l~kg-f~G~v~dl~fah~~~pk~~---~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~ 183 (1283)
T KOG1916|consen 109 MENGVRVANQEPSMR-HNELAKG-FPGGVGDLQFAHTKCPKGR---RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDP 183 (1283)
T ss_pred hhhhhhhccCcchhH-HHHHHhc-CCCCcccccccccCChHHH---HHhhhhheeehHhhccccccceEEeecCcCCCCc
Confidence 445566655544321 0011222 45667777774321 2222 234578888765 34332222 2223333
Q ss_pred EEEEe-----eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEE-----------EcCCCCEEEEEe-CCcEEE
Q psy8285 255 IAMCW-----NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLK-----------WSPNGRYLASGS-NNTVKI 317 (507)
Q Consensus 255 ~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~-d~~i~i 317 (507)
.-+.| +.-++..+..++.+++..+++.. ...+..|...+..++ .+|||+.++.+. ||.++.
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF 261 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence 44555 56677788888999988877643 344555665554433 689999999887 788888
Q ss_pred EEcCCC--CCCCCeeeecCCCC-CeeEEEEccCC-------Cc-EEEEEccCCCCeEEEEeCCCCCee
Q psy8285 318 WDFRQL--DAKRPQVNNQCHLS-AVKAIAWCPWE-------PT-LLATGGGICDQTVRLWNSMNGKEK 374 (507)
Q Consensus 318 ~d~~~~--~~~~~~~~~~~~~~-~v~~~~~~~~~-------~~-~~~~~~~~~d~~i~i~d~~~~~~~ 374 (507)
|.+.-. ...+++..++.|.+ +-.|.-++.+. .+ +++++. .-+..+++|.....+|+
T Consensus 262 ~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Ittt-d~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 262 YQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTT-DVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecc-cCCcceeEeeccchhhh
Confidence 865321 22356666777763 33333333221 11 222222 23667888887776665
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=88.09 E-value=50 Score=37.07 Aligned_cols=66 Identities=11% Similarity=0.016 Sum_probs=45.4
Q ss_pred CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEE-eeccccceeEEEECCCCCEEEEEeCCCcEEE
Q psy8285 380 DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEE-LKIHQERILSAVLSPDQTCVAAASADETISI 450 (507)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~i 450 (507)
+..|..++.-.+.++++. .+.|.+..+. ..+.++.. ..+-.+.|.+++.....+ |.+...+|.++-
T Consensus 702 ~~~i~a~Avv~~~~fval---d~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~n-L~Alt~~G~Lf~ 768 (1774)
T PF11725_consen 702 DRVITAFAVVNDNKFVAL---DDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQN-LYALTSTGELFR 768 (1774)
T ss_pred cCcceeEEEEcCCceEEe---ccCCcccccc-CCCCCccCCCCCCCcchhheeeccccc-eeEecCCCceee
Confidence 356888888877777766 5788999888 55554322 233467899999988755 555666776654
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=87.84 E-value=31 Score=34.33 Aligned_cols=243 Identities=12% Similarity=0.062 Sum_probs=112.7
Q ss_pred EEEEEcCCeEEEEECCCCce-eEEEecCCCC-CCceEEEEEccCC-CeEEEEeCCC--CcEEEEeCCCceeEEEEeecCc
Q psy8285 178 TLAVALDTSVYTWNTKTNKT-QLLVEYPTYD-NAYISCVAWKPRT-TDLAVTNTCT--EYIDLWHEQEERLIQKLRTHMH 252 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~-~~~~~~~~~~-~~~v~~~~~~~~~-~~l~~~~~~d--g~i~iwd~~~~~~~~~~~~~~~ 252 (507)
++.+..+|.++...+..... .....+. . ....+++.+..++ .+|+++ +.- +.+.-|....-+.+..+. .-+
T Consensus 225 ~lL~~e~G~l~~l~l~~~~~~i~i~~~g--~~~~~~s~l~~l~~g~d~lf~g-s~~gds~l~~~~~~~l~~~~~~~-N~~ 300 (504)
T PF10433_consen 225 ILLQDEDGDLYLLTLDNDGGSISITYLG--TLCSIASSLTYLKNGGDYLFVG-SEFGDSQLLQISLSNLEVLDSLP-NWG 300 (504)
T ss_dssp EEEEETTSEEEEEEEEEEEEEEEEEEEE--E--S-ESEEEEESTT--EEEEE-ESSS-EEEEEEESESEEEEEEE-----
T ss_pred EEEEeCCCeEEEEEEEECCCeEEEEEcC--CcCChhheEEEEcCCCEEEEEE-EecCCcEEEEEeCCCcEEEEecc-CcC
Confidence 77778999999888765431 1222221 2 3445677776665 355555 444 445555533334444443 567
Q ss_pred cEEEEEe-e-----CC------EEEEEe---cCCeEEEEECCCCCc-CceeeecC--CCceEEEEEcC-CCCEEEEEeCC
Q psy8285 253 QVIAMCW-N-----GN------LLSCGT---IGGNILHYDVRTHSD-YPTAITRE--GDVVCGLKWSP-NGRYLASGSNN 313 (507)
Q Consensus 253 ~v~~~~~-~-----~~------~l~~~~---~dg~i~i~d~~~~~~-~~~~~~~~--~~~v~~~~~~~-~~~~l~~~~d~ 313 (507)
+|.+++. + .. .|++++ .+|.+++..-.-+-. ........ -..++.+.... +..+++.+...
T Consensus 301 Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~ 380 (504)
T PF10433_consen 301 PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPN 380 (504)
T ss_dssp SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESS
T ss_pred CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCC
Confidence 8888887 1 11 555554 457787764321111 01111111 22334443322 24566666644
Q ss_pred cEEEEEcCCCCCCCCeee-----ecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC--CCeEEE
Q psy8285 314 TVKIWDFRQLDAKRPQVN-----NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD--SQVTSI 386 (507)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--~~i~~~ 386 (507)
.-+++.+...+....+.. +......+.+-.+. ++ .++= -. ...|++.+...++....+... ..|.+.
T Consensus 381 ~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~~-~ivQ-Vt---~~~i~l~~~~~~~~~~~w~~~~~~~I~~a 454 (504)
T PF10433_consen 381 ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-DG-RIVQ-VT---PKGIRLIDLEDGKLTQEWKPPAGSIIVAA 454 (504)
T ss_dssp EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET-TT-EEEE-EE---SSEEEEEESSSTSEEEEEE-TTS---SEE
T ss_pred ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-CC-eEEE-Ee---cCeEEEEECCCCeEEEEEeCCCCCeEEEE
Confidence 555565541100122211 11112223222222 22 3332 22 577999998888777666443 456665
Q ss_pred EECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee-----ccccceeEEEECC
Q psy8285 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK-----IHQERILSAVLSP 434 (507)
Q Consensus 387 ~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~-----~~~~~i~~~~~s~ 434 (507)
+.. +.+++. ...++.+..+.+.......... .....|.++..+|
T Consensus 455 ~~~--~~~v~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 455 SIN--DPQVLV--ALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EES--SSEEEE--EE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEC--CCEEEE--EEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 554 345555 3457888888887665543322 1356677777665
|
... |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.31 E-value=16 Score=30.57 Aligned_cols=149 Identities=7% Similarity=0.016 Sum_probs=76.4
Q ss_pred CCCEEEEEe---CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec
Q psy8285 303 NGRYLASGS---NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT 379 (507)
Q Consensus 303 ~~~~l~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~ 379 (507)
+|.++.+.+ ...|+.||++++ +.+..-.-....+..--...-+..+....-. ++.-..+|.++.+++..+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~g---q~~~s~~l~~~~~FgEGit~~gd~~y~LTw~--egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTG---QEIFSEKLAPDTVFGEGITKLGDYFYQLTWK--EGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCc---eEEEEeecCCccccccceeeccceEEEEEec--cceeEEEChHHhhhhccccc
Confidence 456666655 278999999987 3333221111111111111112233333222 88889999999998888877
Q ss_pred CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc--c---cceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 380 DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH--Q---ERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~--~---~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
+++-..++- |++.|+. +.....++.-|-++.....++... . ..++.+.|- ||...|-.=.+..|..-+..
T Consensus 130 ~GeGWgLt~--d~~~Lim--sdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~ 204 (262)
T COG3823 130 EGEGWGLTS--DDKNLIM--SDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPD 204 (262)
T ss_pred CCcceeeec--CCcceEe--eCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCC
Confidence 766666654 4555666 333445666665554443333211 1 123334442 44444433334445555555
Q ss_pred CCCcccc
Q psy8285 455 PRDKKRK 461 (507)
Q Consensus 455 ~~~~~~~ 461 (507)
+++...-
T Consensus 205 sGrV~~w 211 (262)
T COG3823 205 SGRVVAW 211 (262)
T ss_pred CCcEEEE
Confidence 5554443
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=87.18 E-value=16 Score=32.81 Aligned_cols=92 Identities=14% Similarity=0.208 Sum_probs=56.9
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEe-----CCCCcEEEEeCCCceeEEEEee-----cCcc
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTN-----TCTEYIDLWHEQEERLIQKLRT-----HMHQ 253 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~~dg~i~iwd~~~~~~~~~~~~-----~~~~ 253 (507)
...|++||..+.+....-.- -.+.|+++.|..+.+.++.+. .....+..||..+..- ..+.. -.++
T Consensus 15 C~~lC~yd~~~~qW~~~g~~---i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgp 90 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG---ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGP 90 (281)
T ss_pred CCEEEEEECCCCEeecCCCC---ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCc
Confidence 55799999988776554332 567899999986655555541 1456788999887643 22322 2467
Q ss_pred EEEEEe---eCC-EEEEEe-cCC--eEEEEECC
Q psy8285 254 VIAMCW---NGN-LLSCGT-IGG--NILHYDVR 279 (507)
Q Consensus 254 v~~~~~---~~~-~l~~~~-~dg--~i~i~d~~ 279 (507)
+..+.+ |.. ..+.|. .++ .|..||-.
T Consensus 91 v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred EEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 888887 444 333433 233 35555543
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=87.03 E-value=25 Score=32.50 Aligned_cols=158 Identities=14% Similarity=0.146 Sum_probs=87.0
Q ss_pred CceEEEEEcCCCCEEEEEeC-Cc------EEEEEcCCC-CCCCCe-----eeecCCCC--------CeeEEEEccCCCcE
Q psy8285 293 DVVCGLKWSPNGRYLASGSN-NT------VKIWDFRQL-DAKRPQ-----VNNQCHLS--------AVKAIAWCPWEPTL 351 (507)
Q Consensus 293 ~~v~~~~~~~~~~~l~~~~d-~~------i~i~d~~~~-~~~~~~-----~~~~~~~~--------~v~~~~~~~~~~~~ 351 (507)
+.+..+.+.+++..+++.+| +. +..+++... .....+ ..+....+ ..-+|++.+++ .+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g-~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG-SF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC-CE
Confidence 45778888865555555554 66 666665541 000111 11111111 34478886666 55
Q ss_pred EEEEccCCC------CeEEEEeCCCCCeeeee----------------ecCCCeEEEEECCCCCeEEEEecc---CCC--
Q psy8285 352 LATGGGICD------QTVRLWNSMNGKEKCHV----------------KTDSQVTSILWSEQYRELVTSHGK---QDC-- 404 (507)
Q Consensus 352 ~~~~~~~~d------~~i~i~d~~~~~~~~~~----------------~~~~~i~~~~~s~~~~~l~~~~g~---~d~-- 404 (507)
+++..+ + ..|.-++.. |+....+ ..+..+-+++++|+|+.|+++.-+ .|+
T Consensus 99 ~is~E~--~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 99 WISSEG--GRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred EEEeCC--ccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 555544 6 788888866 6554433 122458899999999966664211 121
Q ss_pred -------eEEE--EeCCC-ccEEEE----eec-----cccceeEEEECCCCCEEEEEe-----CCCcEEEEecC
Q psy8285 405 -------SLKM--WEYPR-LHLIEE----LKI-----HQERILSAVLSPDQTCVAAAS-----ADETISIWNCF 454 (507)
Q Consensus 405 -------~i~v--~d~~~-~~~~~~----~~~-----~~~~i~~~~~s~~~~~l~s~~-----~dg~i~iw~~~ 454 (507)
.+++ ||..+ ++.... +.. ....|..+.+-+++++|+.-= ....++|+.+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 1444 45444 322222 221 346788999999998776421 24456666554
|
|
| >KOG1900|consensus | Back alignment and domain information |
|---|
Probab=86.93 E-value=16 Score=39.50 Aligned_cols=149 Identities=12% Similarity=0.163 Sum_probs=90.9
Q ss_pred EEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEE--------EccCCCcEEEEEccCCCCeEEEEe
Q psy8285 296 CGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIA--------WCPWEPTLLATGGGICDQTVRLWN 367 (507)
Q Consensus 296 ~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~~~~d~~i~i~d 367 (507)
+.+-+-|.=+..-..-|+.+.+|+.+++ .....+.+-...|..+. |.|.=+++++.+. --.|.++-
T Consensus 82 ~~mGiFpeI~RaWiTiDn~L~lWny~~~---~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT---~~ei~ilg 155 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWITIDNNLFLWNYESD---NELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT---PVEIVILG 155 (1311)
T ss_pred eeeccchhhcceEEEeCCeEEEEEcCCC---CccccccchhhhheeeeeecCCCCcchhhhheeEEecc---cceEEEEE
Confidence 3344445444555556799999999986 33444443334444433 3334446666665 55666654
Q ss_pred CCC----CCee-----eeeec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeC----CCc---c-E-------------
Q psy8285 368 SMN----GKEK-----CHVKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEY----PRL---H-L------------- 416 (507)
Q Consensus 368 ~~~----~~~~-----~~~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~----~~~---~-~------------- 416 (507)
+.- +..- ..+.. +..+.++....+|+.+++ | .|| .+|.+ ..+ + +
T Consensus 156 V~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~--G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~l 230 (1311)
T KOG1900|consen 156 VSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFA--G-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSL 230 (1311)
T ss_pred EEeccccCcccccccceeeecCCceEEEEEeccCCcEEEe--e-cCC--CEEEEEEeccCchhhcccccccCchhHHHHh
Confidence 322 2111 12222 346888888888888887 4 466 44443 110 0 0
Q ss_pred ---EEEee-ccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 417 ---IEELK-IHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 417 ---~~~~~-~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
+..+. .+..+|..+........+.+-+..|+|.+|++..
T Consensus 231 vPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 231 VPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 11223 4577899999998888999999999999999987
|
|
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=86.59 E-value=46 Score=35.01 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=49.2
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEe----ec---------------cccceeEEEECCCCCEEEE
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEEL----KI---------------HQERILSAVLSPDQTCVAA 441 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~----~~---------------~~~~i~~~~~s~~~~~l~s 441 (507)
..|.++....-+.+++. ...||+|.++|-.+.+.+... .. .-..+..++|||.+.-++.
T Consensus 260 ~~V~si~~~~~~~~v~~--~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~ 337 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAF--AFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQ 337 (753)
T ss_pred CeEEEEEecccCcEEEE--EEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEE
Confidence 45777777777888888 679999999998877555443 10 0112345889999999999
Q ss_pred EeCCCcEE
Q psy8285 442 ASADETIS 449 (507)
Q Consensus 442 ~~~dg~i~ 449 (507)
-..+|.+.
T Consensus 338 ~~~~~~~~ 345 (753)
T PF11635_consen 338 IDEDGKTK 345 (753)
T ss_pred EecCCCce
Confidence 99999866
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >KOG1983|consensus | Back alignment and domain information |
|---|
Probab=86.39 E-value=34 Score=37.08 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=27.1
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
.....++|+|....++.+ +..|.|++|-...-+
T Consensus 36 ~~~~~~afD~~q~llai~-t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIG-TRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCcceeeccccceEEEE-EecccEEEecccceE
Confidence 356788999999999999 999999999755433
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=85.71 E-value=45 Score=34.15 Aligned_cols=216 Identities=13% Similarity=0.182 Sum_probs=104.8
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee------cCccEEEEEee--CCEEEEEecCCeEEEEEC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT------HMHQVIAMCWN--GNLLSCGTIGGNILHYDV 278 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~ 278 (507)
-...|...+||.|.+.+++. ..+..|.+++-. ..++....- .-+.-..+-|. ...+---+ -.- .+
T Consensus 111 v~nGIvaa~wS~DE~~~cvv-t~~r~il~~~k~-fd~ise~~L~~~dl~ef~khi~VgWgkketqfrgk~--~ra---ql 183 (1243)
T COG5290 111 VSNGIVAASWSADEKTWCVV-TSTREILLFDKY-FDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKG--ARA---QL 183 (1243)
T ss_pred ccCceEEEeeccCCceEEEE-EcCceEEEEecc-ccccchhhcchhHHHHhccceEeeecccchhccccc--hhh---hc
Confidence 56779999999999877777 678888888732 122211110 00111233331 11110000 000 11
Q ss_pred CCCCcCcee----eecCCCceEEEEEcCCCCEEEEEe-C----CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCC
Q psy8285 279 RTHSDYPTA----ITREGDVVCGLKWSPNGRYLASGS-N----NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEP 349 (507)
Q Consensus 279 ~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~-d----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 349 (507)
+....+... +..-...-.-+.|--|..+.+++. + ..+++|..+.. .-..-....+.-..+.|-|+|.
T Consensus 184 rdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~----lds~sep~~g~e~~LSWkpqgS 259 (1243)
T COG5290 184 RDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQ----LDSASEPVTGMEHQLSWKPQGS 259 (1243)
T ss_pred cCCCCcccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeeccccc----cccccCCcccchhccccccCCc
Confidence 111111110 000011112356666777777765 2 34666654321 1111111223334689999997
Q ss_pred cEEEEEccC--CCCeEEEEeC---CCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccc
Q psy8285 350 TLLATGGGI--CDQTVRLWNS---MNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQ 424 (507)
Q Consensus 350 ~~~~~~~~~--~d~~i~i~d~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~ 424 (507)
.+...++.. ....|.++.- +.|+.-...........++|+-....+++ ...+.+++|-..+..-.......-
T Consensus 260 ~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav---~~~n~~~lwttkNyhWYLK~e~~i 336 (1243)
T COG5290 260 KYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAV---AEGNLLKLWTTKNYHWYLKVERQI 336 (1243)
T ss_pred eeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHH---hhcceEEEEEccceEEEEEEeecC
Confidence 766666311 1224555552 22232222222345677788877777776 356789999877643222222223
Q ss_pred cceeEEEECCCC
Q psy8285 425 ERILSAVLSPDQ 436 (507)
Q Consensus 425 ~~i~~~~~s~~~ 436 (507)
..+.-+.|+|..
T Consensus 337 p~~s~vkwhpe~ 348 (1243)
T COG5290 337 PGISYVKWHPEE 348 (1243)
T ss_pred CCcceeeecccc
Confidence 446667888853
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=85.62 E-value=30 Score=32.06 Aligned_cols=232 Identities=14% Similarity=0.120 Sum_probs=114.4
Q ss_pred eeeeeCCCC-EEEEEcCCeEEEEECCCCce-eEEEec---CCCCCCceEEEEEccC---CCeEEEEeCCC--------Cc
Q psy8285 169 SGLDWGYHD-TLAVALDTSVYTWNTKTNKT-QLLVEY---PTYDNAYISCVAWKPR---TTDLAVTNTCT--------EY 232 (507)
Q Consensus 169 ~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~-~~~~~~---~~~~~~~v~~~~~~~~---~~~l~~~~~~d--------g~ 232 (507)
..|+|.||+ ++++-..|.|++++ .++.. ..+... ..........++++|+ ..+|.+..+.. ..
T Consensus 5 ~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~ 83 (331)
T PF07995_consen 5 RSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNR 83 (331)
T ss_dssp EEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEE
T ss_pred eEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCccee
Confidence 368999998 77777899999999 44443 222222 1115667899999995 34555441321 23
Q ss_pred EEEEeCCCc-------eeE-EEEee---cCccEEEEEe--eCCEEEEEecC-------------CeEEEEECCCCC----
Q psy8285 233 IDLWHEQEE-------RLI-QKLRT---HMHQVIAMCW--NGNLLSCGTIG-------------GNILHYDVRTHS---- 282 (507)
Q Consensus 233 i~iwd~~~~-------~~~-~~~~~---~~~~v~~~~~--~~~~l~~~~~d-------------g~i~i~d~~~~~---- 282 (507)
|.-|..... +.+ ..+.. .......|.| |+.+.++.+.. |.|.-.+....-
T Consensus 84 v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dn 163 (331)
T PF07995_consen 84 VVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADN 163 (331)
T ss_dssp EEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTS
T ss_pred eEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCCCC
Confidence 444444332 111 12222 2233455777 67655555432 334444443210
Q ss_pred --------cCceeeecCCCceEEEEEcCC-CCEEEEEe--CCcEEEEEcCCCC--------------------------C
Q psy8285 283 --------DYPTAITREGDVVCGLKWSPN-GRYLASGS--NNTVKIWDFRQLD--------------------------A 325 (507)
Q Consensus 283 --------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~--d~~i~i~d~~~~~--------------------------~ 325 (507)
.......++.. ...++|+|. |+++++-. +..=.|.-++.+. .
T Consensus 164 P~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~ 242 (331)
T PF07995_consen 164 PFVGDDGADSEIYAYGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGF 242 (331)
T ss_dssp TTTTSTTSTTTEEEE--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS
T ss_pred ccccCCCceEEEEEeCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCc
Confidence 01111223333 457999998 76665533 3322333333321 0
Q ss_pred CCCeeeecCCCCCeeEEEEccCCC------cEEEEEccCCCCeEEEEeCCCCCeee---eeecC--CCeEEEEECCCCCe
Q psy8285 326 KRPQVNNQCHLSAVKAIAWCPWEP------TLLATGGGICDQTVRLWNSMNGKEKC---HVKTD--SQVTSILWSEQYRE 394 (507)
Q Consensus 326 ~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~~~~d~~i~i~d~~~~~~~~---~~~~~--~~i~~~~~s~~~~~ 394 (507)
..+...+. +...+..+.|..... .++++.-+ .+.|....+..+..+. .+-.. ..+..+++.|||.+
T Consensus 243 ~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 243 VPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYG--GGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp ---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETT--TTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred Cccceeec-CccccCceEEECCccCccccCcEEEecCC--CCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeE
Confidence 01233333 334566677764321 35554443 6778777776443222 11122 37899999999988
Q ss_pred EEEEeccCCCeEE
Q psy8285 395 LVTSHGKQDCSLK 407 (507)
Q Consensus 395 l~~~~g~~d~~i~ 407 (507)
.++ -..+|.|+
T Consensus 320 yv~--~d~~G~iy 330 (331)
T PF07995_consen 320 YVS--DDSDGKIY 330 (331)
T ss_dssp EEE--E-TTTTEE
T ss_pred EEE--ECCCCeEe
Confidence 887 34566664
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=85.62 E-value=4 Score=23.43 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=22.2
Q ss_pred CCCceEEEEEccCCCeEEEEeCCC--CcEEEE
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCT--EYIDLW 236 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~d--g~i~iw 236 (507)
....-....|+|||+.|+.++..+ |...||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 455678899999999999885566 666665
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=85.22 E-value=54 Score=34.61 Aligned_cols=158 Identities=9% Similarity=0.074 Sum_probs=95.6
Q ss_pred CCCceEEEEEc---c----CCCeEEEEeCCCCcEEEEeCCCc---------------eeEEEEee---cCccEEEEEe--
Q psy8285 207 DNAYISCVAWK---P----RTTDLAVTNTCTEYIDLWHEQEE---------------RLIQKLRT---HMHQVIAMCW-- 259 (507)
Q Consensus 207 ~~~~v~~~~~~---~----~~~~l~~~~~~dg~i~iwd~~~~---------------~~~~~~~~---~~~~v~~~~~-- 259 (507)
...+|..|+|. . ..++|++- ....+.|+...-. .++..+.. ...+..+++|
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vr--t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVR--TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEE--cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 34567777776 2 12355543 5666777762111 22333332 3345667888
Q ss_pred -eCCEEEEEecCCeEEEEECCCCCc----CceeeecCC----------CceEEEEEcCCCCEEEEEeCCcEEEEEcCCCC
Q psy8285 260 -NGNLLSCGTIGGNILHYDVRTHSD----YPTAITREG----------DVVCGLKWSPNGRYLASGSNNTVKIWDFRQLD 324 (507)
Q Consensus 260 -~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~ 324 (507)
+...||.....|...||++..... ......... ..-..+.|.++.+.|+.++...+.++|++...
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNW 235 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCC
Confidence 567999999999999999922110 111111111 22346889889889999998999999999863
Q ss_pred CCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC
Q psy8285 325 AKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN 370 (507)
Q Consensus 325 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 370 (507)
....+ ........|..+.-+|.....+..-. ...|...++..
T Consensus 236 ~~~~l-~~~~~~~~IlDv~~~~~~~~~~FiLT---s~eiiw~~~~~ 277 (765)
T PF10214_consen 236 QTEYL-VTAKTWSWILDVKRSPDNPSHVFILT---SKEIIWLDVKS 277 (765)
T ss_pred ccchh-ccCCChhheeeEEecCCccceEEEEe---cCeEEEEEccC
Confidence 32222 22235567888888887333322222 56888888876
|
These proteins are found in fungi. |
| >KOG1896|consensus | Back alignment and domain information |
|---|
Probab=85.13 E-value=60 Score=35.07 Aligned_cols=177 Identities=14% Similarity=0.122 Sum_probs=93.8
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCceEEEEEcc---------CCCeEEEEe--------CCCCcEEEEeCCC-----c
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKP---------RTTDLAVTN--------TCTEYIDLWHEQE-----E 241 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------~~~~l~~~~--------~~dg~i~iwd~~~-----~ 241 (507)
...|.+.++.+.+....++++ ...-+.+++... ...+|++|. ...|.+.|+|+-. +
T Consensus 1003 ~f~i~LisP~sw~vi~~iefq--~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepg 1080 (1366)
T KOG1896|consen 1003 QFSIQLISPESWEVIDKIEFQ--ENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPG 1080 (1366)
T ss_pred cceeEEecCCccccccccccC--ccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCC
Confidence 345666666666555445554 344455555421 135777762 1358899999742 2
Q ss_pred e-----eEEEE--eecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcC-ceeeecCCCceEEEEEcCCCCEEEEEe-
Q psy8285 242 R-----LIQKL--RTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDY-PTAITREGDVVCGLKWSPNGRYLASGS- 311 (507)
Q Consensus 242 ~-----~~~~~--~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~- 311 (507)
+ .++.+ +...++|..++- +|.++.+-+ -.|.+|++...... ...+.. -++.-....-=.++|+.|.
T Consensus 1081 kP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~G--qKI~v~~l~r~~~ligVaFiD--~~~yv~s~~~vknlIl~gDV 1156 (1366)
T KOG1896|consen 1081 KPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQG--QKIIVRKLDRDSELIGVAFID--LPLYVHSMKVVKNLILAGDV 1156 (1366)
T ss_pred CCcccceeeeeehhhcccceEEEEEeccEEEEccC--cEEEEEEeccCCcceeeEEec--cceeEEehhhhhhheehhhh
Confidence 2 22222 235677877777 565554433 57999999443322 222222 2222222223345666665
Q ss_pred CCcEEEEEcCCCCCCCCeeeec--CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC
Q psy8285 312 NNTVKIWDFRQLDAKRPQVNNQ--CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM 369 (507)
Q Consensus 312 d~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~ 369 (507)
-..|.+.-.... ...+..+. ...-.++++.|--+|..+-...+ ..++.|++|-..
T Consensus 1157 ~ksisfl~fqee--p~rlsL~srd~~~l~v~s~EFLVdg~~L~flvs-Da~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1157 MKSISFLGFQEE--PYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVS-DADRNIHVYMYA 1213 (1366)
T ss_pred hhceEEEEEccC--ceEEEEeecCCchhhceeeeeEEcCCeeEEEEE-cCCCcEEEEEeC
Confidence 366777666542 11222221 12335788888888876643332 238888887543
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=84.13 E-value=47 Score=33.02 Aligned_cols=229 Identities=9% Similarity=0.023 Sum_probs=110.3
Q ss_pred ccCCCeEEEEeCCCCcEEEEeCCCcee--EEEEeec-CccEEEEEe-eCC--EEEEEecCCeEEEEECCCCCcCceeeec
Q psy8285 217 KPRTTDLAVTNTCTEYIDLWHEQEERL--IQKLRTH-MHQVIAMCW-NGN--LLSCGTIGGNILHYDVRTHSDYPTAITR 290 (507)
Q Consensus 217 ~~~~~~l~~~~~~dg~i~iwd~~~~~~--~~~~~~~-~~~v~~~~~-~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 290 (507)
..++..++.+ ..+|.+....+..... ....-+. .....++.+ +.. +|+.|+.-|.=.++.+............
T Consensus 219 ~~~~~~~lL~-~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~ 297 (504)
T PF10433_consen 219 DKDGDRILLQ-DEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP 297 (504)
T ss_dssp STTSSEEEEE-ETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred cCCCCEEEEE-eCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc
Confidence 4456677777 8999999887765441 1111122 445566777 555 8888887766445444432211222223
Q ss_pred CCCceEEEEEcCC----CC------EEEEE-e---CCcEEEEEcCCCCCCC-CeeeecCC--CCCeeEEEEccC-CCcEE
Q psy8285 291 EGDVVCGLKWSPN----GR------YLASG-S---NNTVKIWDFRQLDAKR-PQVNNQCH--LSAVKAIAWCPW-EPTLL 352 (507)
Q Consensus 291 ~~~~v~~~~~~~~----~~------~l~~~-~---d~~i~i~d~~~~~~~~-~~~~~~~~--~~~v~~~~~~~~-~~~~~ 352 (507)
.-++|.++++.+. .. .++++ + +|.+++..-.-+ .. .......- -..++.+..... +.+++
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~--~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIG--IEGLELASSELPGVTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBE--EE--EEEEEEESTEEEEEEE-SSSSSBSEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCC--ceeeeeeccCCCCceEEEEeeecCCCceEEE
Confidence 4567888887532 11 34443 3 388888754322 01 01111111 223444443321 33444
Q ss_pred EEEccCCCCeEEEEeCC---CCCeeeee-----ecCC-CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec-
Q psy8285 353 ATGGGICDQTVRLWNSM---NGKEKCHV-----KTDS-QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI- 422 (507)
Q Consensus 353 ~~~~~~~d~~i~i~d~~---~~~~~~~~-----~~~~-~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~- 422 (507)
.+. ...-+++.+. ..+.+..+ .... .+.+-.+. +..++=. ....|++.+....+.......
T Consensus 376 ~S~----~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQV---t~~~i~l~~~~~~~~~~~w~~~ 446 (504)
T PF10433_consen 376 LSF----PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQV---TPKGIRLIDLEDGKLTQEWKPP 446 (504)
T ss_dssp EEE----SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEE---ESSEEEEEESSSTSEEEEEE-T
T ss_pred EEc----CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEE---ecCeEEEEECCCCeEEEEEeCC
Confidence 443 3344455543 33433222 1111 23333332 3333332 255688998877777666543
Q ss_pred cccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 423 HQERILSAVLSPDQTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 423 ~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
....|.+.+.+ +.+++.+-.++.+..+.+......
T Consensus 447 ~~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~ 481 (504)
T PF10433_consen 447 AGSIIVAASIN--DPQVLVALSGGELVYFELDDNKIS 481 (504)
T ss_dssp TS---SEEEES--SSEEEEEE-TTEEEEEEEETTEEE
T ss_pred CCCeEEEEEEC--CCEEEEEEeCCcEEEEEEECCcee
Confidence 23446555553 356777777888999998776554
|
... |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=83.38 E-value=40 Score=31.65 Aligned_cols=187 Identities=12% Similarity=0.151 Sum_probs=0.0
Q ss_pred CEEEEEecCCeEEEEECCCCCcCceeeecCC----CceEEEEEcCCCCEEEEEeCCc-----EEEEEcCCCCCCCCeeee
Q psy8285 262 NLLSCGTIGGNILHYDVRTHSDYPTAITREG----DVVCGLKWSPNGRYLASGSNNT-----VKIWDFRQLDAKRPQVNN 332 (507)
Q Consensus 262 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~d~~-----i~i~d~~~~~~~~~~~~~ 332 (507)
.+++....++-+.+||+.... ...+.... .-...+.+.-..--|+.+++.. |++|.+... ...+..+
T Consensus 69 SlIigTdK~~GL~VYdL~Gk~--lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~--~g~L~~v 144 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLDGKE--LQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPD--TGELTDV 144 (381)
T ss_dssp -EEEEEETTTEEEEEETTS-E--EEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETT--TTEEEE-
T ss_pred ceEEEEeCCCCEEEEcCCCcE--EEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCC--CCcceEc
Q ss_pred cCCCCCe---------eEEEEcc-CCCcEEEEEccCCCCeEEEEeCC-------CCCeeeeeecCCCeEEEEECCCCCeE
Q psy8285 333 QCHLSAV---------KAIAWCP-WEPTLLATGGGICDQTVRLWNSM-------NGKEKCHVKTDSQVTSILWSEQYREL 395 (507)
Q Consensus 333 ~~~~~~v---------~~~~~~~-~~~~~~~~~~~~~d~~i~i~d~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l 395 (507)
.....++ .|+--+| +|...+..... +|.+..|.+. +++.++.+...+++..|.......+|
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k--~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGK--DGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEET--TSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecC--CceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Q ss_pred EEEeccCCCeEEEEeCC-----CccEEEEeec--cccceeEEEE----CCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 396 VTSHGKQDCSLKMWEYP-----RLHLIEELKI--HQERILSAVL----SPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d~~-----~~~~~~~~~~--~~~~i~~~~~----s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
+. +-++--|.-|+.. .++.+....+ ....|-.|+. .-.|-+|+|.=.+++..+|+....
T Consensus 223 Yv--gEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YV--GEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EE--EETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EE--ecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG1896|consensus | Back alignment and domain information |
|---|
Probab=83.04 E-value=74 Score=34.46 Aligned_cols=139 Identities=13% Similarity=0.107 Sum_probs=76.5
Q ss_pred CcEEEEEcCC--CCCCCCe-----e--eecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC-CCeeeeeecCCC
Q psy8285 313 NTVKIWDFRQ--LDAKRPQ-----V--NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-GKEKCHVKTDSQ 382 (507)
Q Consensus 313 ~~i~i~d~~~--~~~~~~~-----~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~ 382 (507)
|.++|+|+-. ++..++. + ..+...++|..++=- +| +++. +. ...|.+|++.. ...+-.--..-+
T Consensus 1065 Gr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV-~G-~l~~-~~---GqKI~v~~l~r~~~ligVaFiD~~ 1138 (1366)
T KOG1896|consen 1065 GRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV-RG-HLLS-SQ---GQKIIVRKLDRDSELIGVAFIDLP 1138 (1366)
T ss_pred ccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe-cc-EEEE-cc---CcEEEEEEeccCCcceeeEEeccc
Confidence 7899999743 0001111 1 112355677666543 45 4444 33 57899999943 333221111223
Q ss_pred eEEEEECCCCCeEEEEeccCCCeEEEEeCCCc-cEEEEeec--cccceeEEEECCCCC--EEEEEeCCCcEEEEecCCCC
Q psy8285 383 VTSILWSEQYRELVTSHGKQDCSLKMWEYPRL-HLIEELKI--HQERILSAVLSPDQT--CVAAASADETISIWNCFPRD 457 (507)
Q Consensus 383 i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~-~~~~~~~~--~~~~i~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~~ 457 (507)
+.-.+..--+++|++ |.--..|.+.-.... ..+..+.. ..-.+.++.|--||. .++++..|+.|++|-..+..
T Consensus 1139 ~yv~s~~~vknlIl~--gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1139 LYVHSMKVVKNLILA--GDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPEN 1216 (1366)
T ss_pred eeEEehhhhhhheeh--hhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCC
Confidence 333333334566776 555566666555432 22222221 223477888877776 46788899999999988765
Q ss_pred cc
Q psy8285 458 KK 459 (507)
Q Consensus 458 ~~ 459 (507)
+.
T Consensus 1217 ~e 1218 (1366)
T KOG1896|consen 1217 IE 1218 (1366)
T ss_pred cc
Confidence 54
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=82.93 E-value=41 Score=31.41 Aligned_cols=26 Identities=31% Similarity=0.626 Sum_probs=16.6
Q ss_pred EEeeCCEEEEEecC-----------CeEEEEECCCCC
Q psy8285 257 MCWNGNLLSCGTIG-----------GNILHYDVRTHS 282 (507)
Q Consensus 257 ~~~~~~~l~~~~~d-----------g~i~i~d~~~~~ 282 (507)
+..++++.+.|+.+ ..+..||..+..
T Consensus 60 ~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~ 96 (346)
T TIGR03547 60 AAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS 96 (346)
T ss_pred EEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence 34477777777753 246778877654
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=82.87 E-value=68 Score=33.91 Aligned_cols=160 Identities=17% Similarity=0.230 Sum_probs=98.4
Q ss_pred cCCCceEEEEEc---C----CCCEEEEEeCCcEEEEEcCCC------C------CCCCeeeecC---CCCCeeEEEEccC
Q psy8285 290 REGDVVCGLKWS---P----NGRYLASGSNNTVKIWDFRQL------D------AKRPQVNNQC---HLSAVKAIAWCPW 347 (507)
Q Consensus 290 ~~~~~v~~~~~~---~----~~~~l~~~~d~~i~i~d~~~~------~------~~~~~~~~~~---~~~~v~~~~~~~~ 347 (507)
....+|..++|. . ..++|++-....+.|+...-. . ...++..+.. ...+...++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 567789999998 2 235777777777888872211 0 0122333321 2346778999997
Q ss_pred CCcEEEEEccCCCCeEEEEeCCCCC-----ee-------eee-ec---CCCeEEEEECCCCCeEEEEeccCCCeEEEEeC
Q psy8285 348 EPTLLATGGGICDQTVRLWNSMNGK-----EK-------CHV-KT---DSQVTSILWSEQYRELVTSHGKQDCSLKMWEY 411 (507)
Q Consensus 348 ~~~~~~~~~~~~d~~i~i~d~~~~~-----~~-------~~~-~~---~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~ 411 (507)
...-++.-.. .|...|||+.... .. ..+ .. ......+.|.++...|++. ....+.++|+
T Consensus 157 ~~~q~AiVD~--~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~---~r~~l~~~d~ 231 (765)
T PF10214_consen 157 DQRQFAIVDE--KGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC---NRSKLMLIDF 231 (765)
T ss_pred ccceEEEEec--cCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE---cCCceEEEEC
Confidence 7666666554 8999999992111 01 111 00 1234588898888888873 3668999999
Q ss_pred CCccEEEEe--eccccceeEEEECCC--CCEEEEEeCCCcEEEEecCCC
Q psy8285 412 PRLHLIEEL--KIHQERILSAVLSPD--QTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 412 ~~~~~~~~~--~~~~~~i~~~~~s~~--~~~l~s~~~dg~i~iw~~~~~ 456 (507)
.+......+ ......|.++.-+|+ +..++..+ ..|...++.+.
T Consensus 232 ~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~~ 278 (765)
T PF10214_consen 232 ESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKSS 278 (765)
T ss_pred CCCCccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccCC
Confidence 887653312 224567889988887 33333322 46778888774
|
These proteins are found in fungi. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=82.76 E-value=45 Score=31.79 Aligned_cols=143 Identities=13% Similarity=0.130 Sum_probs=83.0
Q ss_pred eEEEEEcCCCCEEEEEeCCcEEE-EEcCCCCCCCC-eeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC
Q psy8285 295 VCGLKWSPNGRYLASGSNNTVKI-WDFRQLDAKRP-QVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 372 (507)
Q Consensus 295 v~~~~~~~~~~~l~~~~d~~i~i-~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 372 (507)
...+..++|+.+++.+..|.+.. ||-.. .. ..........++.+.+.+++. +++++. .|.+. +....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~----~~W~~~~~~~~~~l~~v~~~~dg~-l~l~g~---~G~l~-~S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ----PYWQPHNRASARRIQNMGWRADGG-LWLLTR---GGGLY-VSKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCC----cceEEecCCCccceeeeeEcCCCC-EEEEeC---CceEE-EecCCCC
Confidence 44566778888888888765543 33211 10 111122345688999998885 555544 56643 3334443
Q ss_pred -----eeeeeecC---CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee---ccccceeEEEECCCCCEEEE
Q psy8285 373 -----EKCHVKTD---SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK---IHQERILSAVLSPDQTCVAA 441 (507)
Q Consensus 373 -----~~~~~~~~---~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~s 441 (507)
........ ..+..+.+.+++..+++ | ..|.+..-. ..++.-...+ .-....+.+.|.++++-++
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~--G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~- 386 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA--G-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFV- 386 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEE--E-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEE-
Confidence 22222222 35889999999888877 4 567666553 3443322222 2245678999977766555
Q ss_pred EeCCCcEEEE
Q psy8285 442 ASADETISIW 451 (507)
Q Consensus 442 ~~~dg~i~iw 451 (507)
.+.+|.|.-|
T Consensus 387 ~G~~G~il~~ 396 (398)
T PLN00033 387 LGNDGVLLRY 396 (398)
T ss_pred EeCCcEEEEe
Confidence 5567776655
|
|
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=81.96 E-value=36 Score=32.92 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=16.9
Q ss_pred ceEEEEEcCCCCEEEEEe-CCcEEEE
Q psy8285 294 VVCGLKWSPNGRYLASGS-NNTVKIW 318 (507)
Q Consensus 294 ~v~~~~~~~~~~~l~~~~-d~~i~i~ 318 (507)
.|..+..++.|..++-.+ +|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 466777888888877666 5655443
|
|
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=81.74 E-value=0.71 Score=46.74 Aligned_cols=69 Identities=19% Similarity=0.334 Sum_probs=48.0
Q ss_pred eEEEEEC---CCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEE-----------ECCCCCEEEEEeCCCcE
Q psy8285 383 VTSILWS---EQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV-----------LSPDQTCVAAASADETI 448 (507)
Q Consensus 383 i~~~~~s---~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~-----------~s~~~~~l~s~~~dg~i 448 (507)
+.-+.|. ++.-++.. +..++.|++.+..+... ..+.+|...+..++ .||||..++.++.||.+
T Consensus 183 ~~~V~wcp~~~~~~~ic~--~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v 259 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICY--GLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSV 259 (1283)
T ss_pred cceeeecccccccceeee--ccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcc
Confidence 3444444 45556666 77888888877655332 34455766555433 58999999999999999
Q ss_pred EEEecC
Q psy8285 449 SIWNCF 454 (507)
Q Consensus 449 ~iw~~~ 454 (507)
++|.+.
T Consensus 260 ~f~Qiy 265 (1283)
T KOG1916|consen 260 GFYQIY 265 (1283)
T ss_pred ceeeee
Confidence 999876
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=81.31 E-value=32 Score=30.84 Aligned_cols=113 Identities=12% Similarity=0.192 Sum_probs=66.0
Q ss_pred CeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe------C-CcEEEEEcCCCCCCCCeeeecC-----CCCC
Q psy8285 271 GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS------N-NTVKIWDFRQLDAKRPQVNNQC-----HLSA 338 (507)
Q Consensus 271 g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------d-~~i~i~d~~~~~~~~~~~~~~~-----~~~~ 338 (507)
..|++||..+.+- ...-.+-.+.|+.+.|..+.+++++|. . ..+..||..+. ....+.. -.++
T Consensus 16 ~~lC~yd~~~~qW-~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~----~w~~~~~~~s~~ipgp 90 (281)
T PF12768_consen 16 PGLCLYDTDNSQW-SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ----TWSSLGGGSSNSIPGP 90 (281)
T ss_pred CEEEEEECCCCEe-ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC----eeeecCCcccccCCCc
Confidence 4689999887541 222233567899999997778888775 1 45788888874 2323332 2467
Q ss_pred eeEEEEcc-CCCcEEEEEc-cCCCCeEEEEeCCCCCeeee--eecCCCeEEEEE
Q psy8285 339 VKAIAWCP-WEPTLLATGG-GICDQTVRLWNSMNGKEKCH--VKTDSQVTSILW 388 (507)
Q Consensus 339 v~~~~~~~-~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~--~~~~~~i~~~~~ 388 (507)
|..+.+.. ++..+++.|. ...+..|..||-.+...+.. +.....|..+.+
T Consensus 91 v~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~ 144 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV 144 (281)
T ss_pred EEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence 88887753 3445665543 11144577777555444333 222234555544
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=81.23 E-value=15 Score=35.50 Aligned_cols=144 Identities=14% Similarity=0.219 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEEeCCcEEEEEc-------CCCCCCCCeeee-cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEe
Q psy8285 296 CGLKWSPNGRYLASGSNNTVKIWDF-------RQLDAKRPQVNN-QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWN 367 (507)
Q Consensus 296 ~~~~~~~~~~~l~~~~d~~i~i~d~-------~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d 367 (507)
..+...|.-.+.....|..+++|+. ... .....+ .+....+.++ .++... .|.|++|+
T Consensus 29 ~~~gi~~e~g~Aw~~~d~~l~vW~Y~~~~~s~~~~---~~~~~~~~~~~~~i~~v--------~lv~p~---~G~v~f~~ 94 (422)
T PF08801_consen 29 CSMGIFPEIGRAWIVVDNRLYVWNYSSTQSSPNDG---SDFPLFDDGSSSSIPGV--------GLVKPK---TGRVVFWE 94 (422)
T ss_dssp -EEEEE-TTSEEEEEETTEEEEEE--SS--GG--E---EEEE-----------SE--------EEEE-T---T-EEEEES
T ss_pred eEEEEEcccCEEEEEECCEEEEEeccCCCCCcCcc---cccceecCCCCCCCceE--------EEEEcC---CCCEEecc
Q ss_pred -----------------------CCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCC-------------CeEEEEeC
Q psy8285 368 -----------------------SMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQD-------------CSLKMWEY 411 (507)
Q Consensus 368 -----------------------~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d-------------~~i~v~d~ 411 (507)
+..++.......-.....+.-..+|+.+.. +..| +.......
T Consensus 95 ~I~~~l~~~t~~~i~l~gv~~~~l~~~e~~~~~~~~~~~~~I~~ts~GRif~~--~~~~~~g~~~l~y~~~~~~~~~i~~ 172 (422)
T PF08801_consen 95 SISHLLVLATPSQISLLGVSYSELLSGELSTSLTNVEPSGFIVSTSTGRIFFL--GIRDSNGKYELSYQQLSGRCSKINH 172 (422)
T ss_dssp -TT-TT--EEEE------------------EEEEEEETTTEEEEETT--EEEE--EE-TTS-EEEEE-TT----------
T ss_pred cchhhhhcCccccccccccceeeecCCceEEECCCCceEEEEEECCCCeEEEE--eCCCCCCcEEEEEEcCcCCcccccc
Q ss_pred CCccEEEEeecc----ccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 412 PRLHLIEELKIH----QERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 412 ~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
..+.....+..- ...|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 173 ~~~~~~~~~~p~~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 173 TSSSIFSSLLPSFSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -------------------EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred ccCceeccccCCcccchhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=80.17 E-value=54 Score=30.98 Aligned_cols=102 Identities=11% Similarity=0.025 Sum_probs=61.9
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCc-cEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMH-QVIA 256 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~ 256 (507)
+++...+|.|.-.|..++...-.....+ ....+..-.+..+|+ ++++ +.+|.+..+|..+++.+........ .+..
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~~-~~~~~~~~~~~~~G~-i~~g-~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLLG-AVAQLSGPILGSDGK-IYVG-SWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCcC-cceeccCceEEeCCe-EEEe-cccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 5555688888888888887543333211 112233333333665 6666 7899999999988988887776551 1111
Q ss_pred EEe-eCCEEEEEecCCeEEEEECCCCC
Q psy8285 257 MCW-NGNLLSCGTIGGNILHYDVRTHS 282 (507)
Q Consensus 257 ~~~-~~~~l~~~~~dg~i~i~d~~~~~ 282 (507)
-.. ....+...+.++.+...+..++.
T Consensus 148 ~~v~~~~~v~~~s~~g~~~al~~~tG~ 174 (370)
T COG1520 148 PPVVGDGTVYVGTDDGHLYALNADTGT 174 (370)
T ss_pred CcEEcCcEEEEecCCCeEEEEEccCCc
Confidence 111 33344444467888888877665
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=80.14 E-value=72 Score=32.42 Aligned_cols=206 Identities=9% Similarity=-0.035 Sum_probs=0.0
Q ss_pred eeeeeeCCCCEEEEEcC------CeEEEEECCCCceeEEEecCCCC---------------------CCceEEEEEccCC
Q psy8285 168 TSGLDWGYHDTLAVALD------TSVYTWNTKTNKTQLLVEYPTYD---------------------NAYISCVAWKPRT 220 (507)
Q Consensus 168 i~~~~~s~~~~~~~~~~------~~i~iw~~~~~~~~~~~~~~~~~---------------------~~~v~~~~~~~~~ 220 (507)
|-+...+|..++.+..- ..++++-+..++...+..+.. . .+.|..+.|.+++
T Consensus 63 iwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~-~~~~~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~ 141 (670)
T PF10395_consen 63 IWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIER-KVGSTEDGTVNSETTNEFELKLDDKVVGIKFSSDG 141 (670)
T ss_pred eEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEc-cCccccccccCccccceEEEEcccceEEEEEecCC
Q ss_pred CeEEEEeCCCCcEEEEeC---------CCceeEEEEeecCccEEEEEe--eCCEEEEEec-CCe---EEEEECCCCCcCc
Q psy8285 221 TDLAVTNTCTEYIDLWHE---------QEERLIQKLRTHMHQVIAMCW--NGNLLSCGTI-GGN---ILHYDVRTHSDYP 285 (507)
Q Consensus 221 ~~l~~~~~~dg~i~iwd~---------~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-dg~---i~i~d~~~~~~~~ 285 (507)
+.+++. ..+|.|.+||. .....-..-..+..-|..... ...++++.+. .+. .+++.+.......
T Consensus 142 ~~I~vv-l~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~ 220 (670)
T PF10395_consen 142 KIIYVV-LENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSYKLISLSNESSSI 220 (670)
T ss_pred CEEEEE-EcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEEEEEEeccCCcce
Q ss_pred eeee---cCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCC-eeEEEEccCCCcEEEEEccCCCC
Q psy8285 286 TAIT---REGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSA-VKAIAWCPWEPTLLATGGGICDQ 361 (507)
Q Consensus 286 ~~~~---~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~d~ 361 (507)
..+. .+........|..+...|.--.+++|.+|++...+..+.+.....-... -..+.+.|-...-+..+. +.
T Consensus 221 ~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~s~nRvLLs~---~n 297 (670)
T PF10395_consen 221 FELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPPSPNRVLLSV---NN 297 (670)
T ss_pred EEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCCceEEEEEEechhhccccccceEeecCCCCeEEEEc---CC
Q ss_pred eEEEEeCCCCCeeeeee
Q psy8285 362 TVRLWNSMNGKEKCHVK 378 (507)
Q Consensus 362 ~i~i~d~~~~~~~~~~~ 378 (507)
.|++.|+.-...+..+.
T Consensus 298 kIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 298 KIYLLDLKFESILSEFE 314 (670)
T ss_pred EEEEEeehhhhhhhhhh
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 507 | ||||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 4e-71 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 5e-69 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 2e-65 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 3e-56 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 1e-10 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-09 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 9e-10 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 2e-07 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 5e-05 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-07 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 5e-05 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 2e-07 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 3e-05 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 2e-07 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 4e-05 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 2e-07 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 3e-05 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 2e-07 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 4e-05 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 3e-07 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 4e-05 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 3e-07 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 4e-05 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 3e-07 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 4e-05 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 3e-07 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 3e-05 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-07 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 4e-05 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 3e-07 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 4e-05 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 3e-07 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-05 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 5e-07 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 4e-05 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-06 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 4e-05 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 2e-06 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-05 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-06 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-05 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 5e-06 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 6e-06 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-04 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 7e-06 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 7e-06 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 1e-05 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-05 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-05 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 4e-05 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 4e-05 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 9e-05 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 2e-04 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 2e-04 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 2e-04 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 2e-04 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 2e-04 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 3e-04 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 5e-04 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 5e-04 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 8e-04 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 8e-04 |
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 507 | |||
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.98 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.98 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.97 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.96 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.95 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.95 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.94 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.94 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.94 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.94 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.94 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.93 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.93 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.93 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.93 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.93 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.92 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.91 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.91 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.91 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.9 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.9 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.89 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.89 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.88 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.88 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.88 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.87 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.87 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.87 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.87 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.85 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.85 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.84 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.83 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.83 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.83 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.83 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.82 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.8 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.8 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.78 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.78 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.78 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.75 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.75 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.73 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.73 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.72 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.71 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.71 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.71 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.7 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.7 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.69 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.68 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.68 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.66 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.66 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.66 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.65 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.65 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.65 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.65 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.64 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.62 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.62 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.62 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.61 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.59 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.59 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.57 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.57 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.57 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.56 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.55 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.55 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.54 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.52 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.5 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.48 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.47 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.44 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.43 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.43 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.42 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.41 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.4 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.36 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.36 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.35 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.35 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.33 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.33 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.33 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.31 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.3 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.3 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.28 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.27 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.25 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.24 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.24 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.22 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.2 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.18 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.15 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 99.14 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 99.13 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.1 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.1 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.09 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.09 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.09 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.05 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 99.05 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.03 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.03 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 99.0 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.99 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.98 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.96 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.95 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.94 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.93 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.93 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.93 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.92 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.9 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.88 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.85 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.84 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.81 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.81 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.8 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.78 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.78 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.75 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.73 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.72 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.72 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.71 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.7 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.68 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.66 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 98.64 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.64 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.64 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.63 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.6 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.51 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.5 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.49 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.48 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.47 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.45 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.44 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.42 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.41 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.4 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.39 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.35 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.33 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.3 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.28 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.22 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.17 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.12 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.08 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.07 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.06 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.02 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.85 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.84 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.83 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.79 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.59 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.42 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.42 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.37 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.34 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.28 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.27 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.24 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.24 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.23 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 97.21 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.19 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.13 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.03 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.02 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 96.99 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.88 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.73 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.73 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.66 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.58 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.55 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.54 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.5 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.48 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.34 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 96.29 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.28 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.2 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.15 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.95 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.94 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.72 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 95.52 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.48 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 95.14 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.01 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 94.86 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 94.75 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 94.65 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.24 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 93.75 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 93.73 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 92.45 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 92.22 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 87.6 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 86.28 | |
| 1suu_A | 312 | DNA gyrase subunit A; topoisomerase,DNA gyrase, be | 81.13 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 80.26 |
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-52 Score=397.53 Aligned_cols=380 Identities=37% Similarity=0.706 Sum_probs=291.5
Q ss_pred cCCccccccccccccccccC---chhHHHHHHhhhhhhcccccccccceeEecCCC-CCcccccccC-------------
Q psy8285 80 RSSYDSLCSHYLLQQANDET---ISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRT-VSPTQFLRTL------------- 142 (507)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------- 142 (507)
+..++++++.+.+.+..... ......+ ++.+...+.+.+....+++.|.+++ ..+.+....+
T Consensus 4 r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (420)
T 4gga_A 4 RSAAQMEVASFLLSKENQPENSQTPTKKEH-QKAWALNLNGFDVEEAKILRLSGKPQNAPEGYQNRLKVLYSQKATPGSS 82 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCchhhhhccccccCCcccccCcchHHH-HHHHHhhccccccccceEEeccCCCCCCCcccccCcceecccccCCCCc
Confidence 34566777777776544331 1122333 4455555566565666888887765 2333222211
Q ss_pred CCCCccccCCchhhhcCCCcccccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCe
Q psy8285 143 GKLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTD 222 (507)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 222 (507)
.+..|.++..|++++++|.+.++||++.|+||++++||++.|+.|+|||..+++....+.+.+ |...|++++|+|+|++
T Consensus 83 ~~~~r~i~~~p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~-~~~~V~sv~fspdg~~ 161 (420)
T 4gga_A 83 RKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQ-PGEYISSVAWIKEGNY 161 (420)
T ss_dssp ---CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCS-TTCCEEEEEECTTSSE
T ss_pred cCCCcccCCCCceEEECCCCcccccceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecC-CCCcEEEEEECCCCCE
Confidence 255688999999999999999999999999999999999999999999999999998888877 8899999999999999
Q ss_pred EEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC
Q psy8285 223 LAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP 302 (507)
Q Consensus 223 l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 302 (507)
|+++ +.||.|++||+.+++.+..+.+|...+.++++++..|++++.|+.+++||..........+.+|...+..+.++|
T Consensus 162 lasg-s~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~ 240 (420)
T 4gga_A 162 LAVG-TSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 240 (420)
T ss_dssp EEEE-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred EEEE-ECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC
Confidence 9999 999999999999999999999999999999999999999999999999999987766778889999999999999
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCCC-CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC
Q psy8285 303 NGRYLASGS-NNTVKIWDFRQLDA-KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380 (507)
Q Consensus 303 ~~~~l~~~~-d~~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 380 (507)
+++++++++ |+.+++|+...+.. ...+.....|...|.+++|+|++..++++++++.|++|++||+.++++...+..+
T Consensus 241 ~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~ 320 (420)
T 4gga_A 241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 320 (420)
T ss_dssp TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS
T ss_pred CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc
Confidence 999999999 69999999987632 2345667779999999999999999998887778999999999999999999999
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccc
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKR 460 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 460 (507)
..+.++.|+|+++.+++++|..|+.|+|||+.+++++.++.+|.+.|++++|+|||++|+||+.|++|+|||+.+..+.+
T Consensus 321 ~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 321 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC-
T ss_pred cceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccc
Confidence 99999999999999998767789999999999999999999999999999999999999999999999999998876655
Q ss_pred ce
Q psy8285 461 KA 462 (507)
Q Consensus 461 ~~ 462 (507)
+.
T Consensus 401 ~~ 402 (420)
T 4gga_A 401 RR 402 (420)
T ss_dssp --
T ss_pred hh
Confidence 43
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-48 Score=393.48 Aligned_cols=388 Identities=13% Similarity=0.173 Sum_probs=299.1
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcc--eeeee-cCcccceeeccccccccccCCccC-CceeE
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE--KCHVK-TDSQVTSILWSEQYRESSRSKMVN-TDRYV 77 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~--~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~-~~~~~ 77 (507)
|.||.+.|++++|||||++ ||||+ .|++|+|||+.+++. ..++. |...|.+++|+|+++.+.+..... ....+
T Consensus 55 ~~~h~~~v~~~~~spdg~~-lasg~--~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v 131 (611)
T 1nr0_A 55 YTEHSHQTTVAKTSPSGYY-CASGD--VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV 131 (611)
T ss_dssp ECCCSSCEEEEEECTTSSE-EEEEE--TTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred ecCCCCceEEEEECCCCcE-EEEEe--CCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEE
Confidence 5799999999999999997 99999 899999999976654 34455 788999999999987655322110 00111
Q ss_pred eecCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhh
Q psy8285 78 VDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERIL 157 (507)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (507)
.. |+... +...+
T Consensus 132 ~~----------wd~~~----------------------------------------------------------~~~~l 143 (611)
T 1nr0_A 132 FL----------FDTGT----------------------------------------------------------SNGNL 143 (611)
T ss_dssp EE----------TTTCC----------------------------------------------------------BCBCC
T ss_pred EE----------eeCCC----------------------------------------------------------Cccee
Confidence 11 11000 00000
Q ss_pred cCCCcccccceeeeeeCCCC---EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEE
Q psy8285 158 EAPSIINDFYTSGLDWGYHD---TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYID 234 (507)
Q Consensus 158 ~~~~~~~~~~i~~~~~s~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~ 234 (507)
..+...|.+++|+|++ +++++.|+.|++||..+++... .+.+ |...|.+++|+|++++|+++ +.|++|+
T Consensus 144 ----~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~--~l~~-H~~~V~~v~fspdg~~las~-s~D~~i~ 215 (611)
T 1nr0_A 144 ----TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS--TFGE-HTKFVHSVRYNPDGSLFAST-GGDGTIV 215 (611)
T ss_dssp ----CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE--EECC-CSSCEEEEEECTTSSEEEEE-ETTSCEE
T ss_pred ----cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee--eecc-ccCceEEEEECCCCCEEEEE-ECCCcEE
Confidence 0122358899999985 6677899999999988776544 4455 99999999999999999999 9999999
Q ss_pred EEeCCCceeEEEEe-------ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC---------------------
Q psy8285 235 LWHEQEERLIQKLR-------THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY--------------------- 284 (507)
Q Consensus 235 iwd~~~~~~~~~~~-------~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~--------------------- 284 (507)
+||+.+++.+..+. +|...|.+++| ++++|++++.|++|++||+++++..
T Consensus 216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 295 (611)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS
T ss_pred EEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCC
Confidence 99999999888884 79999999999 7899999999999999999875421
Q ss_pred ---------------------ceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeee-cCCCCCeeE
Q psy8285 285 ---------------------PTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNN-QCHLSAVKA 341 (507)
Q Consensus 285 ---------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~ 341 (507)
...+.+|...|.+++|+|++++|++++ |+.|++||+.++ .....+ ..|...|.+
T Consensus 296 ~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~---~~~~~~~~~h~~~v~~ 372 (611)
T 1nr0_A 296 ALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG---ISNRVFPDVHATMITG 372 (611)
T ss_dssp CEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEECSSCSCSSCEEE
T ss_pred EEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC---ceeeecccCCcceEEE
Confidence 123457889999999999999999999 699999999987 444443 568999999
Q ss_pred EEEccCCCcEEEEEccCCCCeEEEEeCCCCCee-----------------------------------------eeeecC
Q psy8285 342 IAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK-----------------------------------------CHVKTD 380 (507)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~-----------------------------------------~~~~~~ 380 (507)
++|++++ .+++.+. |+.+++|++..+... ..+...
T Consensus 373 ~~~s~~~-~l~s~s~---d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~ 448 (611)
T 1nr0_A 373 IKTTSKG-DLFTVSW---DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS 448 (611)
T ss_dssp EEECTTS-CEEEEET---TTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECS
T ss_pred EEECCCC-cEEEEEc---CCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecC
Confidence 9999876 5655444 999999997653211 111223
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE--EEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCC-CC
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL--IEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFP-RD 457 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~-~~ 457 (507)
..+.+++|+|+|++|++ |+.|+.|++||+.+++. +.. .+|...|++++|+|||++|++++.|++|++|++.+ .+
T Consensus 449 ~~v~~va~spdg~~las--gs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~ 525 (611)
T 1nr0_A 449 YNSSCVALSNDKQFVAV--GGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE 525 (611)
T ss_dssp SCEEEEEECTTSCEEEE--EETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE
T ss_pred CCceEEEEeCCCCEEEE--eCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc
Confidence 46789999999999999 88999999999987643 334 67999999999999999999999999999999987 44
Q ss_pred cccc--ee-ecCCCcceEEeeccC
Q psy8285 458 KKRK--AR-QVGSGSSLEFAILKQ 478 (507)
Q Consensus 458 ~~~~--~~-~~~~~~~~~~~~~~~ 478 (507)
.... .. +...+.++.|+++..
T Consensus 526 ~~~~~~~~~H~~~V~~v~fspdg~ 549 (611)
T 1nr0_A 526 LAHTNSWTFHTAKVACVSWSPDNV 549 (611)
T ss_dssp ESCCCCCCCCSSCEEEEEECTTSS
T ss_pred eeeeeeeeecccceeEEEECCCCC
Confidence 3332 12 445566777777654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-47 Score=351.39 Aligned_cols=313 Identities=41% Similarity=0.763 Sum_probs=286.0
Q ss_pred CCCccccCCchhhhcCCCcccccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeE
Q psy8285 144 KLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDL 223 (507)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 223 (507)
+..|++|..|++++++|.+.+++|+++|+||++++||++.|++|+|||+.+++..+.+...+ |...|++++|+|++++|
T Consensus 4 ~~~r~~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~-~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 4 KTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQ-PGEYISSVAWIKEGNYL 82 (318)
T ss_dssp --CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCS-TTCCEEEEEECTTSSEE
T ss_pred CCCcccCCCCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecC-CCCeEEEEEECCCCCEE
Confidence 34789999999999999999999999999999999999999999999999999988888877 89999999999999999
Q ss_pred EEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCC
Q psy8285 224 AVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN 303 (507)
Q Consensus 224 ~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 303 (507)
+++ +.||.|++||+.+++.+..+.+|...+.++++++..+++++.++.+.+|+..........+.+|...+..+.++++
T Consensus 83 ~sg-s~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (318)
T 4ggc_A 83 AVG-TSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 161 (318)
T ss_dssp EEE-ETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT
T ss_pred EEE-ECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC
Confidence 999 9999999999999999999999999999999999999999999999999999877667788899999999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCCC-CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC
Q psy8285 304 GRYLASGS-NNTVKIWDFRQLDA-KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS 381 (507)
Q Consensus 304 ~~~l~~~~-d~~i~i~d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 381 (507)
++++++++ |+.|++||+++++. .........+.+.|.++.++|++..++..++++.++.|++||..............
T Consensus 162 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~ 241 (318)
T 4ggc_A 162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS 241 (318)
T ss_dssp SSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS
T ss_pred CCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee
Confidence 99999999 69999999987632 22345556688899999999999888877666679999999999999888888888
Q ss_pred CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
.+..+.|+|+++.+++++|+.|+.|++||+++++++.++.+|.+.|++++|+|++++|++|+.||+|+|||+.+.++
T Consensus 242 ~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~dP 318 (318)
T 4ggc_A 242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 318 (318)
T ss_dssp CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCCC
T ss_pred eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCC
Confidence 99999999999999887677899999999999999999999999999999999999999999999999999987543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=383.90 Aligned_cols=440 Identities=21% Similarity=0.333 Sum_probs=313.8
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|+||++.|+||+|||||++ ||||+ .|++|+||| .+++++.++. |...|.+++|+|+++.+.+.. .|..+.+
T Consensus 12 L~GH~~~V~~~a~spdg~~-las~~--~d~~v~iWd-~~~~~~~~l~gh~~~V~~l~fspdg~~las~~---~d~~i~v- 83 (577)
T 2ymu_A 12 LEAHSSSVRGVAFSPDGQT-IASAS--DDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS---DDKTVKL- 83 (577)
T ss_dssp ECCCSSCEEEEEECTTSSC-EEEEE--TTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSEEEEEE---TTSCEEE-
T ss_pred ECCCCCcEEEEEECCCCCE-EEEEe--CCCEEEEEE-CCCCEEEEEeCCCCCEEEEEECCCCCEEEEEe---CCCEEEE-
Confidence 7899999999999999997 89988 899999999 4788999988 889999999999998766532 2333333
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhc------ccccccccceeEecCCC----CCccccccc--CCCCCcc
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLL------HGFEIDRKKVLNQSKRT----VSPTQFLRT--LGKLPRK 148 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~ 148 (507)
|++............. .-..+.+.. .+...+..++|...... ......... ..+..+.
T Consensus 84 ---------Wd~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 153 (577)
T 2ymu_A 84 ---------WNRNGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 153 (577)
T ss_dssp ---------EETTSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred ---------EECCCCEEEEEECCCC-CEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCcc
Confidence 2221110000000000 000000000 01111111222211110 000000000 0000000
Q ss_pred c-cCCchh---hhc------CCCcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEE
Q psy8285 149 V-KAKPER---ILE------APSIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAW 216 (507)
Q Consensus 149 ~-~~~~~~---~~~------~~~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~ 216 (507)
+ ...... ... .........+.++.++|++ +++++.|+.|++|+.. ++..... .+ |...|.+++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~--~~-~~~~v~~~~~ 229 (577)
T 2ymu_A 154 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL--TG-HSSSVRGVAF 229 (577)
T ss_dssp EEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEE--EC-CSSCEEEEEE
T ss_pred ceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC-CcEEEEE--ec-CCCCEEEEEE
Confidence 0 000000 000 0001123347789999987 6777899999999964 4444333 34 8899999999
Q ss_pred ccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCc
Q psy8285 217 KPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDV 294 (507)
Q Consensus 217 ~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 294 (507)
+|++++|+++ +.|+.|++||. +++.+..+.+|...|.+++| +++.|++++.|+.|++||.... ....+.+|...
T Consensus 230 s~dg~~l~~~-~~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~--~~~~~~~h~~~ 305 (577)
T 2ymu_A 230 SPDGQTIASA-SDDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSS 305 (577)
T ss_dssp CTTSSCEEEE-ETTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEECCCSSC
T ss_pred CCCCCEEEEE-eCCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc--EEEEEecCCCC
Confidence 9999999999 89999999996 46788889999999999999 7899999999999999997642 46677889999
Q ss_pred eEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe
Q psy8285 295 VCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE 373 (507)
Q Consensus 295 v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 373 (507)
|.+++|+|+++++++++ |+.|++||... ..+..+.+|...+.+++|+|++..++ +++. |+.+++||. +++.
T Consensus 306 v~~~~~~~~~~~l~t~~~d~~i~~w~~~~----~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~~--dg~v~~~~~-~~~~ 377 (577)
T 2ymu_A 306 VWGVAFSPDGQTIASASDDKTVKLWNRNG----QHLQTLTGHSSSVWGVAFSPDGQTIA-SASD--DKTVKLWNR-NGQL 377 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTS----CEEEEECCCSSCEEEEEECTTSSEEE-EEET--TSEEEEEET-TCCE
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCC----CeeEEEeCCCCCEEEEEECCCCCEEE-EEeC--CCEEEEEcC-CCCE
Confidence 99999999999999999 69999999875 46777888999999999999996554 4444 999999995 5677
Q ss_pred eeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 374 KCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 374 ~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
+..+..+ ..|.+++|+|++++|++ ++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++|+
T Consensus 378 ~~~~~~~~~~v~~~~~s~dg~~l~~--~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~ 454 (577)
T 2ymu_A 378 LQTLTGHSSSVRGVAFSPDGQTIAS--ASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN 454 (577)
T ss_dssp EEEEECCSSCEEEEEECTTSSCEEE--EETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEecCCCCCeEEEEECCCCCEEEE--EeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 7777766 78999999999999999 789999999995 6788889999999999999999999999999999999999
Q ss_pred cCCCCcccceeecCCCcceEEeeccC
Q psy8285 453 CFPRDKKRKARQVGSGSSLEFAILKQ 478 (507)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (507)
+..........+...+..+.|+++..
T Consensus 455 ~~~~~~~~~~~~~~~v~~~~~spd~~ 480 (577)
T 2ymu_A 455 RNGQLLQTLTGHSSSVRGVAFSPDGQ 480 (577)
T ss_dssp TTSCEEEEEECCSSCEEEEEECTTSC
T ss_pred CCCCEEEEEcCCCCCEEEEEEcCCCC
Confidence 75433322233445556667766544
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=383.53 Aligned_cols=374 Identities=15% Similarity=0.161 Sum_probs=287.5
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|.||.+.|++++|+|+++++|+||+ .|++|+|||..+++++.++. |...|.+++|+|+++.+.+.
T Consensus 143 l~gh~~~v~~v~f~p~~~~~l~s~s--~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~------------ 208 (611)
T 1nr0_A 143 LTGQARAMNSVDFKPSRPFRIISGS--DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST------------ 208 (611)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEEEE--TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE------------
T ss_pred ecCCCCCceEEEECCCCCeEEEEEe--CCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE------------
Confidence 6799999999999999987799998 89999999999999998888 88899999999988765432
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
..|..++.|++.... .+..+.. . ...
T Consensus 209 -s~D~~i~lwd~~~g~---------------------------~~~~~~~---------------------~-----~~~ 234 (611)
T 1nr0_A 209 -GGDGTIVLYNGVDGT---------------------------KTGVFED---------------------D-----SLK 234 (611)
T ss_dssp -ETTSCEEEEETTTCC---------------------------EEEECBC---------------------T-----TSS
T ss_pred -ECCCcEEEEECCCCc---------------------------Eeeeecc---------------------c-----ccc
Confidence 122233333322110 0000000 0 000
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEE-------------------------------------
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLV------------------------------------- 201 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~------------------------------------- 201 (507)
...+...|.+++|+|++ +++++.|+.|++||+.+++....+
T Consensus 235 ~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~ 314 (611)
T 1nr0_A 235 NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG 314 (611)
T ss_dssp SCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT
T ss_pred ccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC
Confidence 01123357788999887 666778899999998876644322
Q ss_pred ----ecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE-eecCccEEEEEe-eCCEEEEEecCCeEEE
Q psy8285 202 ----EYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL-RTHMHQVIAMCW-NGNLLSCGTIGGNILH 275 (507)
Q Consensus 202 ----~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~-~~~~l~~~~~dg~i~i 275 (507)
.+.+ |...|.+++|+|++++|+++ +.|+.|++||+.+++....+ ..|...|.+++| .+..+++++.|+.+++
T Consensus 315 ~~~~~~~g-h~~~v~~l~~spdg~~l~s~-s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~ 392 (611)
T 1nr0_A 315 SIDQVRYG-HNKAITALSSSADGKTLFSA-DAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV 392 (611)
T ss_dssp EEEEEECC-CSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred CcceEEcC-CCCCEEEEEEeCCCCEEEEE-eCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEE
Confidence 2345 88999999999999999999 99999999999998877665 569999999999 5668899999999999
Q ss_pred EECCCCCcCc---------------------------------------eeeecCCCceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 276 YDVRTHSDYP---------------------------------------TAITREGDVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 276 ~d~~~~~~~~---------------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
|++....... .....|...+.+++|+||+++|++|+ |+.|
T Consensus 393 w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v 472 (611)
T 1nr0_A 393 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKV 472 (611)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEE
T ss_pred eecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeE
Confidence 9987532110 00012456688999999999999999 6999
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC-CCeeee--ee-cCCCeEEEEECCC
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-GKEKCH--VK-TDSQVTSILWSEQ 391 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~--~~-~~~~i~~~~~s~~ 391 (507)
++||+..... ..... .+|...|++++|+|+++.+++ ++. |++|++||+.+ ++.... +. +...|.+++|+|+
T Consensus 473 ~lwd~~~~~~-~~~~~-~~h~~~v~~v~fspdg~~las-~s~--d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspd 547 (611)
T 1nr0_A 473 HVYKLSGASV-SEVKT-IVHPAEITSVAFSNNGAFLVA-TDQ--SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD 547 (611)
T ss_dssp EEEEEETTEE-EEEEE-EECSSCEEEEEECTTSSEEEE-EET--TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT
T ss_pred EEEEccCCce-eeeec-cCCCCceEEEEECCCCCEEEE-EcC--CCCEEEEEcCCCCceeeeeeeeecccceeEEEECCC
Confidence 9999986410 11233 569999999999999965554 444 99999999987 555443 33 3478999999999
Q ss_pred CCeEEEEeccCCCeEEEEeCCCcc-EE-EEeecc-ccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 392 YRELVTSHGKQDCSLKMWEYPRLH-LI-EELKIH-QERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 392 ~~~l~~~~g~~d~~i~v~d~~~~~-~~-~~~~~~-~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
|++|++ ++.|+.|++||+.+++ .+ ..+.+| ...|++++|+|+++ |++++.|++|++|++
T Consensus 548 g~~las--gs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 548 NVRLAT--GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp SSEEEE--EETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred CCEEEE--EECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 999999 8899999999998765 33 567789 89999999999998 999999999999997
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=357.76 Aligned_cols=373 Identities=31% Similarity=0.608 Sum_probs=289.2
Q ss_pred ceeEeecCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCccc-------ccccC----
Q psy8285 74 DRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQ-------FLRTL---- 142 (507)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~---- 142 (507)
|||+|.+. +++...|.+..... ...| +..++.++.. +. ..|++.|...+..... .....
T Consensus 1 ~~~~~~~~--~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~-~~-~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (401)
T 4aez_A 1 DRFIPSRP--NTANAFVNSISSDV-----PFDY-SESVAEACGF-DL-NTRVLAFKLDAPEAKKPVDLRTQHNRPQRPVV 70 (401)
T ss_dssp ----------------------------------------------C-CEEEEEECSCCCCCCCCCC-------------
T ss_pred CCcCCCch--hhhHHHHhhcCCcc-----hHHH-HHHHHHHcCC-Cc-cCcEEeeCCCCCCCcCcccchhhcccccCCcc
Confidence 57888876 77777777765521 1234 4444444422 21 4588888776521110 00011
Q ss_pred CCCCccccCCchhhhcCCCcccccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCe
Q psy8285 143 GKLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTD 222 (507)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 222 (507)
.+..|.++..|.++++.+...+++++.+++|+++.+++++.|+.|++|++.+++........ |...|.+++|+|++++
T Consensus 71 ~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~--~~~~v~~v~~s~~~~~ 148 (401)
T 4aez_A 71 TPAKRRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETD--ESTYVASVKWSHDGSF 148 (401)
T ss_dssp ----CCCCCSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECC--TTCCEEEEEECTTSSE
T ss_pred ccccCcCCCCcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecC--CCCCEEEEEECCCCCE
Confidence 13468889999999999999999999999999988999999999999999999887776654 7889999999999999
Q ss_pred EEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC
Q psy8285 223 LAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP 302 (507)
Q Consensus 223 l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 302 (507)
|+++ +.||.|++||+.+++.+..+..|...|.+++|+++.|++++.||.|++||++........+..|...|.+++|+|
T Consensus 149 l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 227 (401)
T 4aez_A 149 LSVG-LGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS 227 (401)
T ss_dssp EEEE-ETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred EEEE-CCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC
Confidence 9999 899999999999999999999999999999999999999999999999999966656778889999999999999
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC
Q psy8285 303 NGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS 381 (507)
Q Consensus 303 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 381 (507)
++++|++++ |+.|++||++++ .....+..|...|.+++|+|++..++++++++.|+.|++||+++++++..+..+.
T Consensus 228 ~~~~l~s~~~d~~v~iwd~~~~---~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~ 304 (401)
T 4aez_A 228 DGLQLASGGNDNVVQIWDARSS---IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS 304 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTCS---SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS
T ss_pred CCCEEEEEeCCCeEEEccCCCC---CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 999999999 699999999987 7788888899999999999999999999875569999999999999999998888
Q ss_pred CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEE--EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLI--EELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
.+.+++|+|+++++++++|+.||.|++||+.+++.. ..+.+|...|.+++|+|++++|++++.||.|++|++.+++..
T Consensus 305 ~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 305 QVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp CEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred cEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence 999999999999999976668999999999986544 456789999999999999999999999999999999988776
Q ss_pred cce
Q psy8285 460 RKA 462 (507)
Q Consensus 460 ~~~ 462 (507)
...
T Consensus 385 ~~~ 387 (401)
T 4aez_A 385 KRP 387 (401)
T ss_dssp ---
T ss_pred ccc
Confidence 653
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-46 Score=375.71 Aligned_cols=354 Identities=23% Similarity=0.399 Sum_probs=291.2
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
+.+|.+.|++++|+|+|++ |++++ .|+.|++||. +++++..+. +...|.++.|+|+++.+.+..
T Consensus 217 ~~~~~~~v~~~~~s~dg~~-l~~~~--~d~~i~~w~~-~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~----------- 281 (577)
T 2ymu_A 217 LTGHSSSVRGVAFSPDGQT-IASAS--DDKTVKLWNR-NGQLLQTLTGHSSSVNGVAFRPDGQTIASAS----------- 281 (577)
T ss_dssp EECCSSCEEEEEECTTSSC-EEEEE--TTSCEEEECT-TSCEEEEECCCSSCEEEEEECTTSSEEEEEE-----------
T ss_pred EecCCCCEEEEEECCCCCE-EEEEe--CCCEEEEEeC-CCCEEEEEecCCCCEEEEEEcCCCCEEEEEe-----------
Confidence 4689999999999999997 88887 7999999995 567777776 788999999998876544321
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
.+..++.|..... ....+.
T Consensus 282 --~d~~i~~w~~~~~---------------------------------------------------------~~~~~~-- 300 (577)
T 2ymu_A 282 --DDKTVKLWNRNGQ---------------------------------------------------------LLQTLT-- 300 (577)
T ss_dssp --TTSCEEEEETTSC---------------------------------------------------------EEEEEC--
T ss_pred --CCCEEEEEeCCCc---------------------------------------------------------EEEEEe--
Confidence 1111122211100 000000
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
.....|.+++|+|++ +++++.|+.|++|+....... .+.+ |...+.+++|+|++++|+++ +.||.|++||.
T Consensus 301 --~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~---~~~~-~~~~v~~~~~s~~g~~l~~~-~~dg~v~~~~~ 373 (577)
T 2ymu_A 301 --GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ---TLTG-HSSSVWGVAFSPDGQTIASA-SDDKTVKLWNR 373 (577)
T ss_dssp --CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE---EECC-CSSCEEEEEECTTSSEEEEE-ETTSEEEEEET
T ss_pred --cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE---EEeC-CCCCEEEEEECCCCCEEEEE-eCCCEEEEEcC
Confidence 012346789999987 666789999999998665433 3344 88999999999999999999 99999999995
Q ss_pred CCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 239 QEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
+++.+..+..|...|.+++| ++++|++++.|+.|++||... .....+..|...|.+++|+|++++|++++ |+.|
T Consensus 374 -~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v 450 (577)
T 2ymu_A 374 -NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV 450 (577)
T ss_dssp -TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred -CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC--CEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEE
Confidence 56888889999999999999 789999999999999999653 24677889999999999999999999999 6999
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCe
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRE 394 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~ 394 (507)
++||... +.+..+.+|...|.+++|+|+++.++ +++. |+.|++||. +++++..+..+ ..|++++|+|++++
T Consensus 451 ~~w~~~~----~~~~~~~~~~~~v~~~~~spd~~~la-s~~~--d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~ 522 (577)
T 2ymu_A 451 KLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQTIA-SASD--DKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT 522 (577)
T ss_dssp EEEETTS----CEEEEEECCSSCEEEEEECTTSCEEE-EEET--TSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred EEEECCC----CEEEEEcCCCCCEEEEEEcCCCCEEE-EEeC--CCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCE
Confidence 9999754 67788889999999999999996554 4443 999999995 67888888877 78999999999999
Q ss_pred EEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 395 LVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 395 l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
|++ ++.|+.|++||. +++++..+.+|...|++++|+||+++|++++.|++|++||
T Consensus 523 l~s--~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 523 IAS--ASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEE--EETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEE--EECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999 789999999995 6889999999999999999999999999999999999997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-44 Score=329.14 Aligned_cols=279 Identities=18% Similarity=0.346 Sum_probs=252.4
Q ss_pred cccceeeeeeCCC----C--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEe
Q psy8285 164 NDFYTSGLDWGYH----D--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWH 237 (507)
Q Consensus 164 ~~~~i~~~~~s~~----~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd 237 (507)
+...|.+++|+|+ + +++++.|+.|++|+..+++......+.+ |...|.+++|+|++..++++ +.|+.|++||
T Consensus 31 H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~g-h~~~v~~~~~~~~~~~l~s~-s~D~~i~lWd 108 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEG-HQLGVVSVDISHTLPIAASS-SLDAHIRLWD 108 (321)
T ss_dssp SSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECSSSSEEEEE-ETTSEEEEEE
T ss_pred CCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeecc-CCCCEEEEEECCCCCEEEEE-eCCCcEEEEE
Confidence 3456889999874 2 7778899999999998877666667778 99999999999999999999 9999999999
Q ss_pred CCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCc
Q psy8285 238 EQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNT 314 (507)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~ 314 (507)
+.+++.+..+..+...+.+++| ++++|++++.+|.|++|++++++ ....+..+...+.+++|+|++++|++++ |+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~-~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~ 187 (321)
T 3ow8_A 109 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK-KEYSLDTRGKFILSIAYSPDGKYLASGAIDGI 187 (321)
T ss_dssp TTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS-EEEEEECSSSCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc-eeEEecCCCceEEEEEECCCCCEEEEEcCCCe
Confidence 9999999999999999999999 78999999999999999999876 4566778888999999999999999999 699
Q ss_pred EEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCC
Q psy8285 315 VKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYR 393 (507)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~ 393 (507)
|++||++++ +.+..+.+|..+|.+++|+|++. ++++++. |+.|++||+++++....+..+ ..|.+++|+|+++
T Consensus 188 i~iwd~~~~---~~~~~~~~h~~~v~~l~~spd~~-~l~s~s~--dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~ 261 (321)
T 3ow8_A 188 INIFDIATG---KLLHTLEGHAMPIRSLTFSPDSQ-LLVTASD--DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 261 (321)
T ss_dssp EEEEETTTT---EEEEEECCCSSCCCEEEECTTSC-EEEEECT--TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred EEEEECCCC---cEEEEEcccCCceeEEEEcCCCC-EEEEEcC--CCeEEEEECCCcceeEEEcCCCCceEEEEECCCCC
Confidence 999999987 78888899999999999999985 5555554 999999999999998888877 6799999999999
Q ss_pred eEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
+|++ ++.|+.|++||+.+++++..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 262 ~l~s--~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 262 HFVS--SSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEE--EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEE--EeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 9999 889999999999999999999999999999999999999999999999999996
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-43 Score=326.47 Aligned_cols=275 Identities=22% Similarity=0.349 Sum_probs=246.3
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE- 241 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~- 241 (507)
...|.+++|+|++ +++++.|+.|++||..+++....... |...|.+++|+|++++|+++ +.|+.+++|++.+.
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~s~-~~d~~v~iw~~~~~~ 130 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL---RSSWVMTCAYAPSGNYVACG-GLDNICSIYNLKTRE 130 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC---SSSCEEEEEECTTSSEEEEE-ETTCEEEEEETTTCS
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec---CCccEEEEEECCCCCEEEEE-eCCCeEEEEECccCC
Confidence 3458899999987 67778999999999998887665554 88899999999999999999 89999999999865
Q ss_pred ---eeEEEEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEE
Q psy8285 242 ---RLIQKLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVK 316 (507)
Q Consensus 242 ---~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~ 316 (507)
+....+.+|...|.++.| ++..+++++.|+.|++||+++++ ....+.+|...|.+++|+|+++++++++ |+.|+
T Consensus 131 ~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~ 209 (340)
T 1got_B 131 GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209 (340)
T ss_dssp BSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCc-EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 456678889999999999 56779999999999999999876 5667888999999999999999999999 69999
Q ss_pred EEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECCCCC
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSEQYR 393 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~~~~ 393 (507)
+||++++ .....+.+|...|.+++|+|++..+ ++++. |++|++||+++++.+..+... ..+.+++|+|+++
T Consensus 210 ~wd~~~~---~~~~~~~~h~~~v~~v~~~p~~~~l-~s~s~--d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 283 (340)
T 1got_B 210 LWDVREG---MCRQTFTGHESDINAICFFPNGNAF-ATGSD--DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp EEETTTC---SEEEEECCCSSCEEEEEECTTSSEE-EEEET--TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred EEECCCC---eeEEEEcCCcCCEEEEEEcCCCCEE-EEEcC--CCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence 9999987 7888899999999999999998554 45544 999999999999888777654 3699999999999
Q ss_pred eEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
+|++ |+.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.|+.|++||
T Consensus 284 ~l~~--g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 284 LLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEE--ECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999 88999999999999999999999999999999999999999999999999996
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=338.73 Aligned_cols=278 Identities=19% Similarity=0.340 Sum_probs=252.6
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
...|++++|+|++ +++++.|+.|++||+.+++....+. + |...|.+++|+|++++|+++ +.|++|++||+.+++
T Consensus 108 ~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~--~-h~~~V~~v~~~~~~~~l~sg-s~D~~i~iwd~~~~~ 183 (410)
T 1vyh_C 108 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK--G-HTDSVQDISFDHSGKLLASC-SADMTIKLWDFQGFE 183 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC--C-CSSCEEEEEECTTSSEEEEE-ETTSCCCEEETTSSC
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe--c-cCCcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCc
Confidence 4468999999987 7777899999999999988765544 4 99999999999999999999 999999999999999
Q ss_pred eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8285 243 LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d 319 (507)
++..+.+|...|.+++| ++++|++++.|+.|++||++++. ....+.+|...|.++.|+|+++++++++ |+.|++||
T Consensus 184 ~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 184 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 99999999999999999 68999999999999999999876 5677889999999999999999999999 69999999
Q ss_pred cCCCCCCCCeeeecCCCCCeeEEEEccCC-------------------CcEEEEEccCCCCeEEEEeCCCCCeeeeeecC
Q psy8285 320 FRQLDAKRPQVNNQCHLSAVKAIAWCPWE-------------------PTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 380 (507)
++++ .....+..|...|.+++|+|++ ..++++++. |+.|++||+++++++..+..+
T Consensus 263 ~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~--D~~i~iwd~~~~~~~~~~~~h 337 (410)
T 1vyh_C 263 VATK---ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR--DKTIKMWDVSTGMCLMTLVGH 337 (410)
T ss_dssp TTTC---CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET--TSEEEEEETTTTEEEEEEECC
T ss_pred CCCC---ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC--CCeEEEEECCCCceEEEEECC
Confidence 9987 7788888999999999999973 235666665 999999999999999988877
Q ss_pred -CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 381 -SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 381 -~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
..|.+++|+|++++|++ ++.|+.|++||+.+++++..+.+|...|++++|+|++.+|++|+.||+|++|+++
T Consensus 338 ~~~v~~v~~~~~g~~l~s--~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 338 DNWVRGVLFHSGGKFILS--CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSCEEEEEECSSSSCEEE--EETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CCcEEEEEEcCCCCEEEE--EeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 67999999999999999 8899999999999999999999999999999999999999999999999999863
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-44 Score=390.22 Aligned_cols=424 Identities=16% Similarity=0.228 Sum_probs=314.1
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
+.+|.+.|++++|||+|++ |++|+ .|++|+|||+.+++++.++. |...|.+++|+|+++.+.+.. .+..+.+
T Consensus 611 ~~~h~~~v~~~~~s~~~~~-l~s~~--~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~---~d~~v~v- 683 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQR-IASCG--ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS---ADKKVKI- 683 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSE-EEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSEEEE-
T ss_pred EecccccEEEEEECCCCCE-EEEEe--CCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEe---CCCeEEE-
Confidence 4689999999999999997 88888 89999999999999999988 889999999999987665432 2233333
Q ss_pred CCcccccccccccccccc--------Cch--hHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCcccc
Q psy8285 81 SSYDSLCSHYLLQQANDE--------TIS--YREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVK 150 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (507)
|++...... .+. .+.. .........+...+..++|......
T Consensus 684 ---------wd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~sg~~d~~v~vwd~~~~~------------------ 734 (1249)
T 3sfz_A 684 ---------WDSATGKLVHTYDEHSEQVNCCHFTN--KSNHLLLATGSNDFFLKLWDLNQKE------------------ 734 (1249)
T ss_dssp ---------EETTTCCEEEEEECCSSCEEEEEECS--SSSCCEEEEEETTSCEEEEETTSSS------------------
T ss_pred ---------EECCCCceEEEEcCCCCcEEEEEEec--CCCceEEEEEeCCCeEEEEECCCcc------------------
Confidence 332221100 000 0000 0000001111112233444433211
Q ss_pred CCchhhhcCCCcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCce-------------------------------
Q psy8285 151 AKPERILEAPSIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKT------------------------------- 197 (507)
Q Consensus 151 ~~~~~~~~~~~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~------------------------------- 197 (507)
....+. .....|.+++|+|++ +++++.|+.|++||+.+++.
T Consensus 735 --~~~~~~----~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 808 (1249)
T 3sfz_A 735 --CRNTMF----GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA 808 (1249)
T ss_dssp --EEEEEC----CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT
T ss_pred --hhheec----CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC
Confidence 000000 112235556666655 44455566666666554432
Q ss_pred -----------------------eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccE
Q psy8285 198 -----------------------QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQV 254 (507)
Q Consensus 198 -----------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 254 (507)
..... .+ |...|.+++|+|+++.++++ +.+|.|++||+.++..+..+.+|...|
T Consensus 809 dg~~l~~~~~~~v~~~d~~~~~~~~~~~-~~-~~~~v~~~~~sp~~~~l~~~-~~dg~v~vwd~~~~~~~~~~~~h~~~v 885 (1249)
T 3sfz_A 809 DGDKIIVAAKNKVLLFDIHTSGLLAEIH-TG-HHSTIQYCDFSPYDHLAVIA-LSQYCVELWNIDSRLKVADCRGHLSWV 885 (1249)
T ss_dssp TSSEEEEEETTEEEEEETTTCCEEEEEE-CS-SSSCCCEEEECSSTTEEEEE-CSSSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCEEEEEcCCcEEEEEecCCCceeEEc-CC-CCCceEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCceeeecCCCccce
Confidence 22221 13 78899999999999999999 999999999999999999999999999
Q ss_pred EEEEe--eCCEEEEEecCCeEEEEECCCC---------------------------------------------------
Q psy8285 255 IAMCW--NGNLLSCGTIGGNILHYDVRTH--------------------------------------------------- 281 (507)
Q Consensus 255 ~~~~~--~~~~l~~~~~dg~i~i~d~~~~--------------------------------------------------- 281 (507)
.+++| +++.|++++.||.|++|++.+.
T Consensus 886 ~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 965 (1249)
T 3sfz_A 886 HGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVS 965 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEE
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEE
Confidence 99999 6889999999999999985320
Q ss_pred ---------------------------CcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeec
Q psy8285 282 ---------------------------SDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQ 333 (507)
Q Consensus 282 ---------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~ 333 (507)
......+.+|...|.+++|+|+++++++++ |+.|++||+.++ . .....
T Consensus 966 ~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~---~-~~~~~ 1041 (1249)
T 3sfz_A 966 CCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG---D-YVFLQ 1041 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTT---E-EECCB
T ss_pred EEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC---c-eEEEe
Confidence 012233456888899999999999999998 699999999886 3 33456
Q ss_pred CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 334 CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 334 ~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
.|...+.++.|+|++ .+++.+. |+.|++||+.+++....+..+ ..+.+++|+|+++++++ ++.|+.|++||+.
T Consensus 1042 ~~~~~v~~~~~~~~~-~l~~~~~---dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s--~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A 1042 AHQETVKDFRLLQDS-RLLSWSF---DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSS--TSADKTAKIWSFD 1115 (1249)
T ss_dssp CCSSCEEEEEECSSS-EEEEEES---SSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEE--ECCSSCCCEECSS
T ss_pred cCCCcEEEEEEcCCC-cEEEEEC---CCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEE--EcCCCcEEEEECC
Confidence 799999999999976 5555444 999999999999999888876 78999999999999999 8899999999999
Q ss_pred CccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccce----------eecCCCcceEEeeccCcc
Q psy8285 413 RLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKA----------RQVGSGSSLEFAILKQPV 480 (507)
Q Consensus 413 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 480 (507)
+++++..+.+|...|++++|+|++++|++++.||.|++||+.+++..... .....+..+.|+++...+
T Consensus 1116 ~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l 1193 (1249)
T 3sfz_A 1116 LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTL 1193 (1249)
T ss_dssp SSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCE
T ss_pred CcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEE
Confidence 99999999999999999999999999999999999999999988876654 234556777887766543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=339.46 Aligned_cols=280 Identities=20% Similarity=0.334 Sum_probs=245.2
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|.||.++|++++|+|++++ |+||+ .|++|+|||+.+++++.++. |...|.
T Consensus 104 l~gh~~~V~~~~~~p~~~~-l~s~s--~Dg~i~vwd~~~~~~~~~l~~h~~~V~-------------------------- 154 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSV-MVSAS--EDATIKVWDYETGDFERTLKGHTDSVQ-------------------------- 154 (410)
T ss_dssp EECCSSCEEEEEECSSSSE-EEEEE--SSSCEEEEETTTCCCCEEECCCSSCEE--------------------------
T ss_pred ecccCCcEEEEEEcCCCCE-EEEEe--CCCeEEEEECCCCcEEEEEeccCCcEE--------------------------
Confidence 5799999999999999986 88888 89999999999998777665 444444
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 155 -------------------------------------------------------------------------------- 154 (410)
T 1vyh_C 155 -------------------------------------------------------------------------------- 154 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
+++|+|++ +++++.|+.|++||+.+++... .+.+ |...|.+++|+|++++|+++ +.|+.|++||+
T Consensus 155 ---------~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~--~~~~-h~~~V~~v~~~p~~~~l~s~-s~D~~i~~wd~ 221 (410)
T 1vyh_C 155 ---------DISFDHSGKLLASCSADMTIKLWDFQGFECIR--TMHG-HDHNVSSVSIMPNGDHIVSA-SRDKTIKMWEV 221 (410)
T ss_dssp ---------EEEECTTSSEEEEEETTSCCCEEETTSSCEEE--CCCC-CSSCEEEEEECSSSSEEEEE-ETTSEEEEEET
T ss_pred ---------EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE--EEcC-CCCCEEEEEEeCCCCEEEEE-eCCCeEEEEEC
Confidence 45555554 6677899999999998877544 4455 99999999999999999999 99999999999
Q ss_pred CCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCC-------------
Q psy8285 239 QEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN------------- 303 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~------------- 303 (507)
.+++++..+.+|...|.++.| ++.+|++++.|+.|++||+++.+ ....+..|...|.+++|+|+
T Consensus 222 ~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 300 (410)
T 1vyh_C 222 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSE 300 (410)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred CCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-eeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence 999999999999999999999 68999999999999999999875 56678889999999999996
Q ss_pred -------CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee
Q psy8285 304 -------GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC 375 (507)
Q Consensus 304 -------~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 375 (507)
+.+|++|+ |+.|++||++++ .++..+.+|...|.+++|+|++..+++.+. |+.|++||+.+++++.
T Consensus 301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~---D~~i~vwd~~~~~~~~ 374 (410)
T 1vyh_C 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVGHDNWVRGVLFHSGGKFILSCAD---DKTLRVWDYKNKRCMK 374 (410)
T ss_dssp -------CCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSSSSCEEEEET---TTEEEEECCTTSCCCE
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEEECCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCceEE
Confidence 67899999 699999999988 788889999999999999999976665544 9999999999999999
Q ss_pred eeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 376 HVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 376 ~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
.+..+ ..|++++|+|++++|++ |+.|+.|++|+++
T Consensus 375 ~~~~h~~~v~~l~~~~~~~~l~s--gs~D~~i~vW~~r 410 (410)
T 1vyh_C 375 TLNAHEHFVTSLDFHKTAPYVVT--GSVDQTVKVWECR 410 (410)
T ss_dssp EEECCSSCEEEEEECSSSSCEEE--EETTSEEEEEC--
T ss_pred EEcCCCCcEEEEEEcCCCCEEEE--EeCCCcEEEEeCC
Confidence 88877 68999999999999999 8899999999863
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-43 Score=335.77 Aligned_cols=273 Identities=15% Similarity=0.218 Sum_probs=240.0
Q ss_pred ceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 167 YTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.|.+++|+|++ +++++.++.|++|+ .+++....+ .+ |...|.+++|+|++++|+++ +.||.|++||+.+++.+
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~--~~-~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVL--NF-HRAPIVSVKWNKDGTHIISM-DVENVTILWNVISGTVM 184 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEE--CC-CCSCEEEEEECTTSSEEEEE-ETTCCEEEEETTTTEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeec--cC-CCccEEEEEECCCCCEEEEE-ecCCeEEEEECCCCcEE
Confidence 47789999987 66677999999999 455544443 34 89999999999999999999 89999999999999999
Q ss_pred EEEeecCcc---------------EEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEE
Q psy8285 245 QKLRTHMHQ---------------VIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLA 308 (507)
Q Consensus 245 ~~~~~~~~~---------------v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 308 (507)
..+..+... +.++.| .+..+++++.+|.|++||+++.+ ....+..|...|.+++|+|++++|+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~ 263 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT-PTGKLIGHHGPISVLEFNDTNKLLL 263 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS-CSEEECCCSSCEEEEEEETTTTEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc-eeeeeccCCCceEEEEECCCCCEEE
Confidence 988877776 888888 57789999999999999999875 6667788999999999999999999
Q ss_pred EEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEE
Q psy8285 309 SGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSI 386 (507)
Q Consensus 309 ~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~ 386 (507)
+++ |+.|++||++.+ +....+..|...+.+++|+|++ ++++++. |+.|++||+++++.+..+..+ ..+.++
T Consensus 264 ~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~i~~~ 336 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNG---NSQNCFYGHSQSIVSASWVGDD--KVISCSM--DGSVRLWSLKQNTLLALSIVDGVPIFAG 336 (425)
T ss_dssp EEETTSCEEEECSSSB---SCSEEECCCSSCEEEEEEETTT--EEEEEET--TSEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred EEcCCCEEEEEECCCC---ccceEecCCCccEEEEEECCCC--EEEEEeC--CCcEEEEECCCCcEeEecccCCccEEEE
Confidence 999 699999999987 7778888899999999999998 4444443 999999999999998888875 789999
Q ss_pred EECCCCCeEEEEeccCCCeEEEEeCCCcc--------------------EEEEeecccc--ceeEEEECCCCCEEEEEeC
Q psy8285 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLH--------------------LIEELKIHQE--RILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 387 ~~s~~~~~l~~~~g~~d~~i~v~d~~~~~--------------------~~~~~~~~~~--~i~~~~~s~~~~~l~s~~~ 444 (507)
+|+|++++|++ ++.||.|++||+.+++ ++..+..|.. .|++++|+|++++|++++.
T Consensus 337 ~~s~~~~~l~~--~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 414 (425)
T 1r5m_A 337 RISQDGQKYAV--AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYS 414 (425)
T ss_dssp EECTTSSEEEE--EETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEES
T ss_pred EEcCCCCEEEE--EECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEec
Confidence 99999999999 7889999999999888 8899999976 9999999999999999999
Q ss_pred CCcEEEEecC
Q psy8285 445 DETISIWNCF 454 (507)
Q Consensus 445 dg~i~iw~~~ 454 (507)
||.|++|++.
T Consensus 415 dg~i~iw~~~ 424 (425)
T 1r5m_A 415 LQEGSVVAIP 424 (425)
T ss_dssp SSCCEEEECC
T ss_pred CceEEEEeec
Confidence 9999999985
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-43 Score=325.66 Aligned_cols=240 Identities=18% Similarity=0.244 Sum_probs=202.1
Q ss_pred ceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEE--ecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 167 YTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLV--EYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
.|.+++|+|++ +++++.||.|+|||+.+++..... ...+ |...|++++|+|++++|+++ +.|+.|++||+.+++.
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~-H~~~V~~v~~spdg~~l~sg-s~d~~i~iwd~~~~~~ 161 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYE-HDDIVSTVSVLSSGTQAVSG-SKDICIKVWDLAQQVV 161 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEEC-CSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEE
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccC-CCCCEEEEEECCCCCEEEEE-eCCCeEEEEECCCCcE
Confidence 37789999988 778889999999999988755433 3445 99999999999999999999 9999999999999999
Q ss_pred EEEEeecCccEEEEEe--eC-CEEEEEecCCeEEEEECCCCCcCceee--ecCCCceEEEEEcCC-CCEEEEEe-CCcEE
Q psy8285 244 IQKLRTHMHQVIAMCW--NG-NLLSCGTIGGNILHYDVRTHSDYPTAI--TREGDVVCGLKWSPN-GRYLASGS-NNTVK 316 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~~~-d~~i~ 316 (507)
+..+.+|...|.+++| ++ .+|++++.|+.|++||+++++ ....+ ..+...+.+++|+|+ +++|++|+ |+.|+
T Consensus 162 ~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~ 240 (344)
T 4gqb_B 162 LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-PASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS 240 (344)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-CEEECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc-eeeeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence 9999999999999999 34 589999999999999999876 33333 345667999999995 56888888 69999
Q ss_pred EEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEE
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELV 396 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 396 (507)
+||++++ +++..+.+|...|++++|+|++..++++++. |++|++||+++++......+...|++++|+|+++.++
T Consensus 241 ~wd~~~~---~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~--D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~ll 315 (344)
T 4gqb_B 241 LVDTKST---SCVLSSAVHSQCVTGLVFSPHSVPFLASLSE--DCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLL 315 (344)
T ss_dssp EEESCC-----CCEEEECCSSCEEEEEECSSSSCCEEEEET--TSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEE
T ss_pred EEECCCC---cEEEEEcCCCCCEEEEEEccCCCeEEEEEeC--CCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEE
Confidence 9999988 7888999999999999999999778887775 9999999999988766544457899999999998766
Q ss_pred EEeccCCCeEEEEeCCCcc
Q psy8285 397 TSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 397 ~~~g~~d~~i~v~d~~~~~ 415 (507)
++ ++.|+.|++|++.+..
T Consensus 316 as-~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 316 TT-VGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EE-EETTSCEEEEECCC--
T ss_pred EE-EcCCCeEEEEECCCCC
Confidence 44 7899999999998653
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=364.77 Aligned_cols=386 Identities=12% Similarity=0.077 Sum_probs=275.5
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeeecCcccceeeccccccccccCCccCCceeEeecC
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRESSRSKMVNTDRYVVDRS 81 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 81 (507)
+.||.+.|+||+|+|+|++ ||+|+ .|++|+|||..+++++..+.+...|.+++|++ ++.+.+.
T Consensus 13 ~~gh~~~V~~lafspdg~~-lAsgs--~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~------------- 75 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNL-LAIAT--VTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVI------------- 75 (902)
T ss_dssp EEECSSCEEEEEEETTTTE-EEEEE--TTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEE-------------
T ss_pred ccCCCCCcEEEEECCCCCE-EEEEe--CCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEE-------------
Confidence 3589999999999999986 99998 89999999999988887777888999999998 5433321
Q ss_pred CccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCCC
Q psy8285 82 SYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPS 161 (507)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (507)
..|..++.|++... +. ...+.
T Consensus 76 s~D~~v~lWd~~~~----------------------------~~----------------------------~~~~~--- 96 (902)
T 2oaj_A 76 NAKDTVYVLSLYSQ----------------------------KV----------------------------LTTVF--- 96 (902)
T ss_dssp ETTCEEEEEETTTC----------------------------SE----------------------------EEEEE---
T ss_pred ECcCeEEEEECCCC----------------------------cE----------------------------EEEEc---
Confidence 12223333332221 00 00000
Q ss_pred cccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEE---------EecCCCCCCceEEEEEccCC-CeEEEEeCC
Q psy8285 162 IINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLL---------VEYPTYDNAYISCVAWKPRT-TDLAVTNTC 229 (507)
Q Consensus 162 ~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~ 229 (507)
....|.+++|+|++ +++++.|+.|++||+.+++.... ....+ |...|.+++|+|++ ..++++ +.
T Consensus 97 --~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~-h~~~V~sl~~sp~~~~~l~~g-~~ 172 (902)
T 2oaj_A 97 --VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAA-RLSPIVSIQWNPRDIGTVLIS-YE 172 (902)
T ss_dssp --CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSS-CCCCCCEEEEETTEEEEEEEE-CS
T ss_pred --CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccccccccc-CCCCeEEEEEccCCCCEEEEE-eC
Confidence 11247889999987 66677999999999998875321 22355 88999999999975 577777 99
Q ss_pred CCcEEEEeCCCceeEEEEeec------------------CccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCce-ee
Q psy8285 230 TEYIDLWHEQEERLIQKLRTH------------------MHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPT-AI 288 (507)
Q Consensus 230 dg~i~iwd~~~~~~~~~~~~~------------------~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~ 288 (507)
||.| +||+++++.+..+..| ...|.+++| ++++|++++.||.|++||+++++.... .+
T Consensus 173 dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l 251 (902)
T 2oaj_A 173 YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTV 251 (902)
T ss_dssp SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECS
T ss_pred CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEee
Confidence 9999 9999999998888765 477999999 789999999999999999988652211 11
Q ss_pred ---e-------------cCCCceEEEEEc----CCC-CEEEEEe-C-----CcEEEEEc---------------------
Q psy8285 289 ---T-------------REGDVVCGLKWS----PNG-RYLASGS-N-----NTVKIWDF--------------------- 320 (507)
Q Consensus 289 ---~-------------~~~~~v~~~~~~----~~~-~~l~~~~-d-----~~i~i~d~--------------------- 320 (507)
. .|...|.+++|+ |++ .++++|+ + ..+.+|++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~ 331 (902)
T 2oaj_A 252 FETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANP 331 (902)
T ss_dssp SCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSC
T ss_pred cccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCc
Confidence 1 134578999995 443 4566664 2 15666652
Q ss_pred --------------------------------------------------CCCCCCCC----eeeecCCCCCeeE-----
Q psy8285 321 --------------------------------------------------RQLDAKRP----QVNNQCHLSAVKA----- 341 (507)
Q Consensus 321 --------------------------------------------------~~~~~~~~----~~~~~~~~~~v~~----- 341 (507)
.++..... ...+..|...|++
T Consensus 332 ~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~ 411 (902)
T 2oaj_A 332 KQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAAS 411 (902)
T ss_dssp SEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEE
T ss_pred cceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEE
Confidence 11100000 0001112233444
Q ss_pred -----------------------------EEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee--ee----------ecC
Q psy8285 342 -----------------------------IAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC--HV----------KTD 380 (507)
Q Consensus 342 -----------------------------~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~----------~~~ 380 (507)
++|+|++ .++++++. |++|++||+.+++... .+ .+.
T Consensus 412 ~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg-~~laSgs~--DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~ 488 (902)
T 2oaj_A 412 VPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG-TAFITGHS--NGSVRIYDASHGDIQDNASFEVNLSRTLNKAKE 488 (902)
T ss_dssp EEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE-EEEEEEET--TSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSS
T ss_pred cCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC-cEEEEecC--CCcEEEEECCCccccCCceEEeechhhcCCCCC
Confidence 4456766 56666665 9999999998875321 11 223
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc---------------------------------------------c
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL---------------------------------------------H 415 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~---------------------------------------------~ 415 (507)
..|.+++|+|++++||+ |+.||+|+|||+.++ +
T Consensus 489 ~~V~svafspdg~~LAs--gs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 566 (902)
T 2oaj_A 489 LAVDKISFAAETLELAV--SIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFM 566 (902)
T ss_dssp CCEEEEEEETTTTEEEE--EETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEE
T ss_pred CceeEEEecCCCCeEEE--EecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccc
Confidence 68999999999999999 889999999998765 2
Q ss_pred EEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccc-----e--eecCCCcceEEe
Q psy8285 416 LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRK-----A--RQVGSGSSLEFA 474 (507)
Q Consensus 416 ~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~-----~--~~~~~~~~~~~~ 474 (507)
++..+.+|.+.|++++||||| +||+|+.|++|++||+.++..+.. . .+...+.+++|+
T Consensus 567 ~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs 631 (902)
T 2oaj_A 567 PSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFV 631 (902)
T ss_dssp EEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEE
T ss_pred eeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEE
Confidence 467788899999999999999 999999999999999987655421 1 123346778888
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-42 Score=319.33 Aligned_cols=232 Identities=18% Similarity=0.323 Sum_probs=206.8
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
|.+++|++++ +++++.|+.|++||+.+++....+.. +...+.+++|+|++++|+++ +.+|.|++||+.+++...
T Consensus 83 v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~---~~~~~~~~~~spdg~~l~~g-~~dg~v~i~~~~~~~~~~ 158 (321)
T 3ow8_A 83 VVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDA---GPVDAWTLAFSPDSQYLATG-THVGKVNIFGVESGKKEY 158 (321)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC---CTTCCCCEEECTTSSEEEEE-CTTSEEEEEETTTCSEEE
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeC---CCccEEEEEECCCCCEEEEE-cCCCcEEEEEcCCCceeE
Confidence 4456777765 66678999999999999887665554 77889999999999999999 999999999999999999
Q ss_pred EEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q psy8285 246 KLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQ 322 (507)
Q Consensus 246 ~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~ 322 (507)
.+..|...+.+++| ++++|++++.|+.|++||+++++ ....+.+|...|.+++|+|++++|++++ |+.|++||++.
T Consensus 159 ~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~ 237 (321)
T 3ow8_A 159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK-LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH 237 (321)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT
T ss_pred EecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc-EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC
Confidence 99999999999999 78999999999999999999875 5667888999999999999999999999 69999999998
Q ss_pred CCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEecc
Q psy8285 323 LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGK 401 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~ 401 (507)
+ .....+.+|...|.+++|+|++..+++ ++. |++|++||+++++++..+..+ ..|.+++|+|++++|++ ++
T Consensus 238 ~---~~~~~~~~h~~~v~~~~~sp~~~~l~s-~s~--D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s--~~ 309 (321)
T 3ow8_A 238 A---NLAGTLSGHASWVLNVAFCPDDTHFVS-SSS--DKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVS--VG 309 (321)
T ss_dssp C---CEEEEECCCSSCEEEEEECTTSSEEEE-EET--TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE--EE
T ss_pred c---ceeEEEcCCCCceEEEEECCCCCEEEE-EeC--CCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEE--Ee
Confidence 7 778888999999999999999965554 443 999999999999999988766 78999999999999999 78
Q ss_pred CCCeEEEEeCC
Q psy8285 402 QDCSLKMWEYP 412 (507)
Q Consensus 402 ~d~~i~v~d~~ 412 (507)
.|+.|++||.+
T Consensus 310 ~d~~i~vwd~p 320 (321)
T 3ow8_A 310 DDQEIHIYDCP 320 (321)
T ss_dssp TTCCEEEEECC
T ss_pred CCCeEEEEeCC
Confidence 99999999964
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-43 Score=328.18 Aligned_cols=241 Identities=14% Similarity=0.219 Sum_probs=199.4
Q ss_pred eeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEE--EecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 168 TSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLL--VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
|.+++|+|++ +++++.|+.|++||+.+++.... ....+ |...|++++|+|++++|+++ +.|+.|++||+.+++.+
T Consensus 97 V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~l~sg-s~dg~v~iwd~~~~~~~ 174 (357)
T 4g56_B 97 VTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYE-HDDIVKTLSVFSDGTQAVSG-GKDFSVKVWDLSQKAVL 174 (357)
T ss_dssp EEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECC-CSSCEEEEEECSSSSEEEEE-ETTSCEEEEETTTTEEE
T ss_pred EEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCC-CCCCEEEEEECCCCCEEEEE-eCCCeEEEEECCCCcEE
Confidence 6678999987 88889999999999988765432 23345 89999999999999999999 99999999999999999
Q ss_pred EEEeecCccEEEEEe--e-CCEEEEEecCCeEEEEECCCCCcCce-eeecCCCceEEEEEcCCC-CEEEEEe-CCcEEEE
Q psy8285 245 QKLRTHMHQVIAMCW--N-GNLLSCGTIGGNILHYDVRTHSDYPT-AITREGDVVCGLKWSPNG-RYLASGS-NNTVKIW 318 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~ 318 (507)
..+.+|...|.+++| + ..++++++.|+.|++||+++++.... ....+...+.+++|+|++ .+|++|+ |+.|++|
T Consensus 175 ~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~w 254 (357)
T 4g56_B 175 KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLV 254 (357)
T ss_dssp EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEE
T ss_pred EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEE
Confidence 999999999999999 3 35899999999999999998763322 234567789999999974 6788888 6999999
Q ss_pred EcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECC-CCCeEEE
Q psy8285 319 DFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSE-QYRELVT 397 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~ 397 (507)
|++++ +.+..+.+|...|++++|+|++..++++++. |++|++||+++++++..+.+...|++++|+| ++++|++
T Consensus 255 d~~~~---~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~--D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s 329 (357)
T 4g56_B 255 NIKNP---DSAQTSAVHSQNITGLAYSYHSSPFLASISE--DCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTT 329 (357)
T ss_dssp ESSCG---GGCEEECCCSSCEEEEEECSSSSCCEEEEET--TSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEE
T ss_pred ECCCC---cEeEEEeccceeEEEEEEcCCCCCEEEEEeC--CCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEE
Confidence 99987 7888889999999999999999888887775 9999999999999888877668999999998 7888888
Q ss_pred EeccCCCeEEEEeCCCccEE
Q psy8285 398 SHGKQDCSLKMWEYPRLHLI 417 (507)
Q Consensus 398 ~~g~~d~~i~v~d~~~~~~~ 417 (507)
++.|+.|++|++.+....
T Consensus 330 --~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 330 --VGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp --EETTSCEEEEECC-----
T ss_pred --EcCCCeEEEEECCCCCcc
Confidence 789999999999764433
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=320.97 Aligned_cols=278 Identities=17% Similarity=0.198 Sum_probs=227.7
Q ss_pred cceeeeeeCCCC-EEEEEcCCeEEEEECCC------------CceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCc
Q psy8285 166 FYTSGLDWGYHD-TLAVALDTSVYTWNTKT------------NKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEY 232 (507)
Q Consensus 166 ~~i~~~~~s~~~-~~~~~~~~~i~iw~~~~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~ 232 (507)
..|.+++|+||| +++++.|+.+++||... +....... +...|.+++|+|++ .|+++ +.||.
T Consensus 31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~s~d~-~l~~~-s~dg~ 104 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQ----TEAGVADLTWVGER-GILVA-SDSGA 104 (344)
T ss_dssp SEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEE----ESSCEEEEEEETTT-EEEEE-ETTSE
T ss_pred CCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeec----cCCCEEEEEEeCCC-eEEEE-ECCCE
Confidence 358899999999 77777788888886321 01111111 56789999999985 67777 89999
Q ss_pred EEEEeCCCceeEEE----EeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC-
Q psy8285 233 IDLWHEQEERLIQK----LRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR- 305 (507)
Q Consensus 233 i~iwd~~~~~~~~~----~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 305 (507)
|+|||+.+++.+.. ..+|...|.+++| ++++|++|+.|++|++||+++++ ....+.+|...|.+++|+|++.
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~-~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV-VLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECSSCTT
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCcCCceEEEEecCCCCC
Confidence 99999998865443 4479999999999 79999999999999999999876 6778889999999999999885
Q ss_pred EEEEEe-CCcEEEEEcCCCCCCCCeeeec--CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-C
Q psy8285 306 YLASGS-NNTVKIWDFRQLDAKRPQVNNQ--CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-S 381 (507)
Q Consensus 306 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~ 381 (507)
+|++++ |++|++||++++ ++...+. .+...+.+++|+|++..++++++. |+.|++||+++++++..+..+ .
T Consensus 184 ~l~s~s~D~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~--dg~v~~wd~~~~~~~~~~~~h~~ 258 (344)
T 4gqb_B 184 VFLSCSEDNRILLWDTRCP---KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE--NGTVSLVDTKSTSCVLSSAVHSQ 258 (344)
T ss_dssp EEEEEETTSCEEEEETTSS---SCEEECC----CCCEEEEEECSSCTTEEEEEET--TSEEEEEESCC--CCEEEECCSS
T ss_pred ceeeecccccccccccccc---ceeeeeecceeeccceeeeecCCCCcceEEecc--CCcEEEEECCCCcEEEEEcCCCC
Confidence 788888 699999999987 5665553 356679999999988888888875 999999999999999999877 6
Q ss_pred CeEEEEECCCCC-eEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCC-EEEEEeCCCcEEEEecCCCCc
Q psy8285 382 QVTSILWSEQYR-ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT-CVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 382 ~i~~~~~s~~~~-~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~ 458 (507)
.|++++|+|++. +|++ |+.|+.|+|||+.+++.+ .+.+|.+.|++++|+|+++ +|++++.|++|++|++.+...
T Consensus 259 ~v~~v~fsp~g~~~las--gs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 259 CVTGLVFSPHSVPFLAS--LSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp CEEEEEECSSSSCCEEE--EETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred CEEEEEEccCCCeEEEE--EeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 899999999985 6777 889999999999988755 5788999999999999986 567899999999999986543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-42 Score=319.37 Aligned_cols=279 Identities=18% Similarity=0.323 Sum_probs=236.4
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|+||.+.|++++|+||+++ |+||+ .|++|+|||+.+++++..+. +...
T Consensus 51 l~gH~~~v~~~~~s~d~~~-l~s~s--~Dg~v~iWd~~~~~~~~~~~~~~~~---------------------------- 99 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRL-LLSAS--QDGKLIIWDSYTTNKVHAIPLRSSW---------------------------- 99 (340)
T ss_dssp ECCCSSCEEEEEECTTSSE-EEEEE--TTTEEEEEETTTCCEEEEEECSSSC----------------------------
T ss_pred ecCCCCceEEEEECCCCCE-EEEEe--CCCcEEEEECCCCCcceEeecCCcc----------------------------
Confidence 6799999999999999987 88888 89999999999988766554 2222
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 100 -------------------------------------------------------------------------------- 99 (340)
T 1got_B 100 -------------------------------------------------------------------------------- 99 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCce--eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEE
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKT--QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLW 236 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iw 236 (507)
|.+++|+|++ +++++.|+.|++|++.+++. .....+.+ |...|.++.|++++. ++++ +.|+.|++|
T Consensus 100 -------v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~-l~s~-s~d~~i~~w 169 (340)
T 1got_B 100 -------VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG-HTGYLSCCRFLDDNQ-IVTS-SGDTTCALW 169 (340)
T ss_dssp -------EEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEEC-CSSCEEEEEEEETTE-EEEE-ETTSCEEEE
T ss_pred -------EEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecC-CCccEEEEEECCCCc-EEEE-ECCCcEEEE
Confidence 3346666665 66678999999999987542 33344556 999999999998875 7777 899999999
Q ss_pred eCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CC
Q psy8285 237 HEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NN 313 (507)
Q Consensus 237 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~ 313 (507)
|+.+++.+..+.+|...|.+++| ++++|++++.|+.|++||++++. ....+.+|...|.+++|+|++++|++++ |+
T Consensus 170 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~ 248 (340)
T 1got_B 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAFATGSDDA 248 (340)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCe-eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCC
Confidence 99999999999999999999999 68899999999999999999875 5667888999999999999999999999 69
Q ss_pred cEEEEEcCCCCCCCCeeeec--CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECC
Q psy8285 314 TVKIWDFRQLDAKRPQVNNQ--CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSE 390 (507)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~ 390 (507)
.|++||++.+ +.+..+. .+...|.+++|+|++..++ +++. |+.|++||+.+++.+..+..+ ..|.+++|+|
T Consensus 249 ~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~g~~--d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~ 322 (340)
T 1got_B 249 TCRLFDLRAD---QELMTYSHDNIICGITSVSFSKSGRLLL-AGYD--DFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322 (340)
T ss_dssp CEEEEETTTT---EEEEEECCTTCCSCEEEEEECTTSSEEE-EEET--TSEEEEEETTTCCEEEEEECCSSCEEEEEECT
T ss_pred cEEEEECCCC---cEEEEEccCCcccceEEEEECCCCCEEE-EECC--CCeEEEEEcccCcEeeEeecCCCcEEEEEEcC
Confidence 9999999876 4454443 2335799999999996554 4444 999999999999998888877 7899999999
Q ss_pred CCCeEEEEeccCCCeEEEEe
Q psy8285 391 QYRELVTSHGKQDCSLKMWE 410 (507)
Q Consensus 391 ~~~~l~~~~g~~d~~i~v~d 410 (507)
++++|++ |+.|+.|++||
T Consensus 323 dg~~l~s--~s~D~~i~iWd 340 (340)
T 1got_B 323 DGMAVAT--GSWDSFLKIWN 340 (340)
T ss_dssp TSSCEEE--EETTSCEEEEC
T ss_pred CCCEEEE--EcCCccEEecC
Confidence 9999999 88999999997
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=315.95 Aligned_cols=275 Identities=20% Similarity=0.319 Sum_probs=244.2
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE- 241 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~- 241 (507)
...|.+++|+|++ +++++.|+.|++||..+++....... |...|.+++|+|++..++++ +.|+.+++|++...
T Consensus 64 ~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~---~~~~v~~~~~sp~g~~lasg-~~d~~i~v~~~~~~~ 139 (354)
T 2pbi_B 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM---PCTWVMACAYAPSGCAIACG-GLDNKCSVYPLTFDK 139 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSSCCCEEEECTTSSEEEEE-STTSEEEEEECCCCT
T ss_pred CCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec---CCCCEEEEEECCCCCEEEEe-eCCCCEEEEEEeccc
Confidence 3458999999987 77788999999999998887666655 77889999999999999999 99999999998643
Q ss_pred -----eeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC--CCCEEEEEe-
Q psy8285 242 -----RLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP--NGRYLASGS- 311 (507)
Q Consensus 242 -----~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~- 311 (507)
.....+..|...|.+++| ++..|++++.|++|++||+++++ ....+.+|...|.+++|+| ++++|++++
T Consensus 140 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~ 218 (354)
T 2pbi_B 140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-LLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218 (354)
T ss_dssp TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECCCSSCCEEEEEET
T ss_pred cccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeC
Confidence 345677789999999999 67899999999999999999876 5677889999999999987 568999999
Q ss_pred CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEE
Q psy8285 312 NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILW 388 (507)
Q Consensus 312 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~ 388 (507)
|+.|++||++++ +++..+..|...|.+++|+|++. ++++++. |++|++||++.++.+..+..+ ..+.+++|
T Consensus 219 Dg~v~~wd~~~~---~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~--D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 292 (354)
T 2pbi_B 219 DKKAMVWDMRSG---QCVQAFETHESDVNSVRYYPSGD-AFASGSD--DATCRLYDLRADREVAIYSKESIIFGASSVDF 292 (354)
T ss_dssp TSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS-EEEEEET--TSCEEEEETTTTEEEEEECCTTCCSCEEEEEE
T ss_pred CCeEEEEECCCC---cEEEEecCCCCCeEEEEEeCCCC-EEEEEeC--CCeEEEEECCCCcEEEEEcCCCcccceeEEEE
Confidence 799999999988 78888899999999999999985 4555554 999999999998877766544 36899999
Q ss_pred CCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 389 SEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 389 s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
+|++++|++ |+.|+.|++||+.+++.+..+.+|...|++++|+|++++|++++.|+.|++|+
T Consensus 293 s~~g~~l~~--g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 293 SLSGRLLFA--GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp CTTSSEEEE--EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred eCCCCEEEE--EECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999 88999999999999999999999999999999999999999999999999996
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=344.22 Aligned_cols=390 Identities=13% Similarity=0.127 Sum_probs=289.8
Q ss_pred Ccccccc-eeeeeecc--CcceeeeccccccccceeeecccCC--------cceeeee-cCcccceeeccccccccccCC
Q psy8285 2 NQCHLSA-VKAIAWCP--WEPTLLATGGGICDQTVRLWNSMNG--------KEKCHVK-TDSQVTSILWSEQYRESSRSK 69 (507)
Q Consensus 2 l~gH~~~-V~~l~fsp--~g~~llasg~~~~d~~i~iWd~~~g--------~~~~~~~-~~~~v~~~~~s~~~~~~~~~~ 69 (507)
|.+|.+. |++++|+| ++++ |++|+ .|++|+|||+.++ +++..+. +...|.+++|+|+++.+....
T Consensus 59 ~~~h~~~~v~~~~~sp~~~~~~-l~s~~--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 135 (615)
T 1pgu_A 59 FTGHGSSVVTTVKFSPIKGSQY-LCSGD--ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG 135 (615)
T ss_dssp ECTTTTSCEEEEEECSSTTCCE-EEEEE--TTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EecCCCceEEEEEECcCCCCCE-EEEec--CCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEec
Confidence 5789999 99999999 9987 88888 8999999999865 6666676 788999999999887654322
Q ss_pred ccCCceeEeecCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccc
Q psy8285 70 MVNTDRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKV 149 (507)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (507)
... +. .. .++.++..
T Consensus 136 ~~~-~~--------~~--------------------------------------~v~~~d~~------------------ 150 (615)
T 1pgu_A 136 EGR-DN--------FG--------------------------------------VFISWDSG------------------ 150 (615)
T ss_dssp CCS-SC--------SE--------------------------------------EEEETTTC------------------
T ss_pred cCC-CC--------cc--------------------------------------EEEEEECC------------------
Confidence 110 00 00 11111100
Q ss_pred cCCchhhhcCCCcccccceeeeeeCCCC---EEEEEcCCeEEEEECCCCceeEEEecCCCCCC---ceEEEEEccC-CCe
Q psy8285 150 KAKPERILEAPSIINDFYTSGLDWGYHD---TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA---YISCVAWKPR-TTD 222 (507)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~ 222 (507)
.+...+. .....|.+++|+|++ +++++.|+.|++||..+++....+. + |.. .|.+++|+|+ +++
T Consensus 151 --~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~--~-~~~~~~~v~~~~~~~~~~~~ 221 (615)
T 1pgu_A 151 --NSLGEVS----GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR--T-HHKQGSFVRDVEFSPDSGEF 221 (615)
T ss_dssp --CEEEECC----SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC--S-SSCTTCCEEEEEECSTTCCE
T ss_pred --Ccceeee----cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec--c-cCCCCceEEEEEECCCCCCE
Confidence 0000000 123357889999986 6667799999999998887655544 4 777 8999999999 999
Q ss_pred EEEEeCCCCcEEEEeCCCceeEEEE-e---ecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecC----CC
Q psy8285 223 LAVTNTCTEYIDLWHEQEERLIQKL-R---THMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITRE----GD 293 (507)
Q Consensus 223 l~~~~~~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~ 293 (507)
|+++ +.||.|++||+.+++.+..+ . .|...|.+++| ++++|++++.|+.|++||+++.+ ....+..+ ..
T Consensus 222 l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~ 299 (615)
T 1pgu_A 222 VITV-GSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSK-CVQKWTLDKQQLGN 299 (615)
T ss_dssp EEEE-ETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTE-EEEEEECCTTCGGG
T ss_pred EEEE-eCCCeEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCc-EEEEEcCCCCcccC
Confidence 9998 89999999999999999998 6 89999999999 89999999999999999999865 44445544 36
Q ss_pred ceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccC-------------------------
Q psy8285 294 VVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW------------------------- 347 (507)
Q Consensus 294 ~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------------- 347 (507)
.+.++.|. +++++++++ |+.|++||++.+ +.+..+.+|...|.+++| |+
T Consensus 300 ~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~---~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~ 374 (615)
T 1pgu_A 300 QQVGVVAT-GNGRIISLSLDGTLNFYELGHD---EVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNL 374 (615)
T ss_dssp CEEEEEEE-ETTEEEEEETTSCEEEEETTEE---EEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSC
T ss_pred ceeEEEeC-CCCeEEEEECCCCEEEEECCCC---cEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCc
Confidence 77888886 888999988 699999999875 455555555444444444 32
Q ss_pred --------CCcEEEEEc---------------------------------------------------------------
Q psy8285 348 --------EPTLLATGG--------------------------------------------------------------- 356 (507)
Q Consensus 348 --------~~~~~~~~~--------------------------------------------------------------- 356 (507)
+..+++.+.
T Consensus 375 v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (615)
T 1pgu_A 375 IVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSL 454 (615)
T ss_dssp EEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred eEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEE
Confidence 333333222
Q ss_pred -------cCC-CCeEEEEeCCCCCee-eeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec-ccc
Q psy8285 357 -------GIC-DQTVRLWNSMNGKEK-CHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI-HQE 425 (507)
Q Consensus 357 -------~~~-d~~i~i~d~~~~~~~-~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~-~~~ 425 (507)
+.. |+.|++||+.+++.. ..+..+ ..+.+++|+|++++|++ ++.|+.|++||+.+++++..+.+ |..
T Consensus 455 ~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~h~~ 532 (615)
T 1pgu_A 455 SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA--GDVMGKILLYDLQSREVKTSRWAFRTS 532 (615)
T ss_dssp CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEECCSCCCSS
T ss_pred cCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEE--cCCCCeEEEeeCCCCcceeEeecCCCC
Confidence 001 344444444443332 223333 67999999999999999 88999999999999999999988 999
Q ss_pred ceeEEEECC----------CCCEEEEEeCCCcEEEEecCCC-Cccccee-ecCCCcceEEeecc
Q psy8285 426 RILSAVLSP----------DQTCVAAASADETISIWNCFPR-DKKRKAR-QVGSGSSLEFAILK 477 (507)
Q Consensus 426 ~i~~~~~s~----------~~~~l~s~~~dg~i~iw~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 477 (507)
.|++++|+| ++++|++++.||.|++|++.++ +....+. +...+..+.|.++.
T Consensus 533 ~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 596 (615)
T 1pgu_A 533 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS 596 (615)
T ss_dssp CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT
T ss_pred ceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCC
Confidence 999999999 9999999999999999999987 4444332 34556667777654
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-43 Score=337.10 Aligned_cols=279 Identities=15% Similarity=0.268 Sum_probs=227.2
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCC--ceeEEEecCCCCCCceEEEEEccC-CCeEEEEeCCCCcEEEEeCCCce
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTN--KTQLLVEYPTYDNAYISCVAWKPR-TTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
|.+++|+|++ +++++.|+.|++|++.+. .......+.+ |...|.+++|+|+ +.+|+++ +.||.|++||+.+++
T Consensus 70 v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~-~~dg~v~iwd~~~~~ 147 (416)
T 2pm9_A 70 FNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSN-HSSSVKTVKFNAKQDNVLASG-GNNGEIFIWDMNKCT 147 (416)
T ss_dssp EEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCC-SSSCCCEEEECSSSTTBEEEE-CSSSCEEBCBTTTTS
T ss_pred eEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccC-CccceEEEEEcCCCCCEEEEE-cCCCeEEEEECCCCc
Confidence 5567888876 666678999999999872 1123445555 9999999999998 7888888 999999999999876
Q ss_pred ------eEE---EEeecCccEEEEEe--e-CCEEEEEecCCeEEEEECCCCCcCceeeecC------CCceEEEEEcCCC
Q psy8285 243 ------LIQ---KLRTHMHQVIAMCW--N-GNLLSCGTIGGNILHYDVRTHSDYPTAITRE------GDVVCGLKWSPNG 304 (507)
Q Consensus 243 ------~~~---~~~~~~~~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~v~~~~~~~~~ 304 (507)
... ....|...|.+++| + +.+|++++.|+.|++||+++.+ ....+..+ ...+.+++|+|++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (416)
T 2pm9_A 148 ESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK-EVIHLSYTSPNSGIKQQLSVVEWHPKN 226 (416)
T ss_dssp SCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE-EEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred cccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC-cceEEeccccccccCCceEEEEECCCC
Confidence 332 23578999999999 4 6799999999999999999875 34445444 7889999999997
Q ss_pred -CEEEEEe-CC---cEEEEEcCCCCCCCCeeeec-CCCCCeeEEEEcc-CCCcEEEEEccCCCCeEEEEeCCCCCeeeee
Q psy8285 305 -RYLASGS-NN---TVKIWDFRQLDAKRPQVNNQ-CHLSAVKAIAWCP-WEPTLLATGGGICDQTVRLWNSMNGKEKCHV 377 (507)
Q Consensus 305 -~~l~~~~-d~---~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 377 (507)
.++++++ |+ .|++||++.+. .+...+. +|...|.+++|+| ++. ++++++. |+.|++||+++++++..+
T Consensus 227 ~~~l~~~~~d~~~~~i~~~d~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~-~l~s~~~--dg~v~~wd~~~~~~~~~~ 301 (416)
T 2pm9_A 227 STRVATATGSDNDPSILIWDLRNAN--TPLQTLNQGHQKGILSLDWCHQDEH-LLLSSGR--DNTVLLWNPESAEQLSQF 301 (416)
T ss_dssp TTEEEEEECCSSSCCCCEEETTSTT--SCSBCCCSCCSSCEEEEEECSSCSS-CEEEEES--SSEEEEECSSSCCEEEEE
T ss_pred CCEEEEEECCCCCceEEEEeCCCCC--CCcEEeecCccCceeEEEeCCCCCC-eEEEEeC--CCCEEEeeCCCCccceee
Confidence 6888888 47 99999999752 4556666 7999999999999 664 5555544 999999999999999988
Q ss_pred ecC-CCeEEEEECCCC-CeEEEEeccCCCeEEEEeCCCccEEEEeec---------------------------------
Q psy8285 378 KTD-SQVTSILWSEQY-RELVTSHGKQDCSLKMWEYPRLHLIEELKI--------------------------------- 422 (507)
Q Consensus 378 ~~~-~~i~~~~~s~~~-~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~--------------------------------- 422 (507)
..+ ..+.+++|+|++ .+|++ ++.|+.|++||+.+.+.......
T Consensus 302 ~~~~~~v~~~~~s~~~~~~l~s--~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (416)
T 2pm9_A 302 PARGNWCFKTKFAPEAPDLFAC--ASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAP 379 (416)
T ss_dssp ECSSSCCCCEEECTTCTTEEEE--CCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCC
T ss_pred cCCCCceEEEEECCCCCCEEEE--EecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCC
Confidence 876 689999999999 78888 88999999999987654322211
Q ss_pred --cccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 423 --HQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 423 --~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
|..++.+++|+|+|++|++++.|+.|+||++.++
T Consensus 380 ~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 380 TWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp STTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 5677889999999999999999999999999864
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=310.30 Aligned_cols=281 Identities=20% Similarity=0.296 Sum_probs=235.6
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|++|.+.|++|+|+|+|++ |++|+ .|++|+|||+.+++++..+. +...|.++.|+
T Consensus 9 ~~~h~~~V~~~~fsp~~~~-l~s~~--~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~--------------------- 64 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPW-VLTTL--YSGRVELWNYETQVEVRSIQVTETPVRAGKFI--------------------- 64 (304)
T ss_dssp EEEECSCEEEEEECSSSSE-EEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---------------------
T ss_pred ecCCCCceEEEEECCCCCE-EEEEc--CCCcEEEEECCCCceeEEeeccCCcEEEEEEe---------------------
Confidence 6799999999999999997 88888 79999999999998877665 44444444443
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 65 -------------------------------------------------------------------------------- 64 (304)
T 2ynn_A 65 -------------------------------------------------------------------------------- 64 (304)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
|++ +++++.|+.|++||+.+++....+. + |...|.+++|+|++++|+++ +.|++|++||+
T Consensus 65 --------------~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~--~-h~~~v~~~~~~~~~~~l~sg-s~D~~v~lWd~ 126 (304)
T 2ynn_A 65 --------------ARKNWIIVGSDDFRIRVFNYNTGEKVVDFE--A-HPDYIRSIAVHPTKPYVLSG-SDDLTVKLWNW 126 (304)
T ss_dssp --------------GGGTEEEEEETTSEEEEEETTTCCEEEEEE--C-CSSCEEEEEECSSSSEEEEE-ETTSCEEEEEG
T ss_pred --------------CCCCEEEEECCCCEEEEEECCCCcEEEEEe--C-CCCcEEEEEEcCCCCEEEEE-CCCCeEEEEEC
Confidence 433 6778899999999999988765544 4 99999999999999999999 99999999999
Q ss_pred CCc-eeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC--CCCEEEEEe-
Q psy8285 239 QEE-RLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP--NGRYLASGS- 311 (507)
Q Consensus 239 ~~~-~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~- 311 (507)
.++ .....+.+|...|.+++| ++..|++++.|+.|++||++...........+...+..+.|+| ++++|++++
T Consensus 127 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~ 206 (304)
T 2ynn_A 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (304)
T ss_dssp GGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET
T ss_pred CCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC
Confidence 887 556778899999999999 4679999999999999999887644444556778899999987 778999999
Q ss_pred CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECC
Q psy8285 312 NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSE 390 (507)
Q Consensus 312 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~ 390 (507)
|+.|++||++++ +++..+.+|...|.+++|+|+++ ++++++. |++|++||+++++.+..+..+ ..+.+++|+|
T Consensus 207 D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~--Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 207 DLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPTLP-IIISGSE--DGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp TSEEEEEETTTT---EEEEEEECCSSCEEEEEECSSSS-EEEEEET--TSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred CCeEEEEeCCCC---ccceeeCCCCCCEEEEEECCCCC-EEEEEcC--CCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence 699999999987 78889999999999999999985 5555554 999999999999999998876 6899999999
Q ss_pred CCC--eEEEEeccCCCeEEEEeCCC
Q psy8285 391 QYR--ELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 391 ~~~--~l~~~~g~~d~~i~v~d~~~ 413 (507)
++. ++++ |+ ++.+.+|++.+
T Consensus 281 ~~~~~~~as--g~-~~g~~~~~~~~ 302 (304)
T 2ynn_A 281 TGRKNYIAS--GF-DNGFTVLSLGN 302 (304)
T ss_dssp TCGGGCEEE--EE-TTEEEEEECC-
T ss_pred CCCceEEEE--ec-CCceEEEEecc
Confidence 886 3555 55 55577887754
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=310.70 Aligned_cols=274 Identities=17% Similarity=0.240 Sum_probs=232.4
Q ss_pred eeeeeeCCCC-EEEEEcCCeEEEEECCCCce---eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce-
Q psy8285 168 TSGLDWGYHD-TLAVALDTSVYTWNTKTNKT---QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER- 242 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~- 242 (507)
|.+++|+|++ +++++.|+.|++|++.+++. .......+ |...|.+++|+|++++|+++ +.||.|++||+.+++
T Consensus 54 v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~ 131 (337)
T 1gxr_A 54 VCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLN-RDNYIRSCKLLPDGCTLIVG-GEASTLSIWDLAAPTP 131 (337)
T ss_dssp CCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSC-TTSBEEEEEECTTSSEEEEE-ESSSEEEEEECCCC--
T ss_pred eEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccC-CCCcEEEEEEcCCCCEEEEE-cCCCcEEEEECCCCCc
Confidence 4456677766 56655699999999987653 22333334 88999999999999999999 899999999999877
Q ss_pred -eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEE
Q psy8285 243 -LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIW 318 (507)
Q Consensus 243 -~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~ 318 (507)
....+..|...+.+++| ++++|++++.||.|++||+++.+ ....+..|...+.+++|+|+++++++++ |+.|++|
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~ 210 (337)
T 1gxr_A 132 RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210 (337)
T ss_dssp EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEE
Confidence 56677889999999999 68899999999999999999875 5667778999999999999999999999 6999999
Q ss_pred EcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEE
Q psy8285 319 DFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTS 398 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 398 (507)
|++++ +.+..+. +...+.+++|+|++..+++.+. ++.|++||+++++......+...+.+++|+|++++|++
T Consensus 211 d~~~~---~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~---~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~- 282 (337)
T 1gxr_A 211 DLREG---RQLQQHD-FTSQIFSLGYCPTGEWLAVGME---SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVS- 282 (337)
T ss_dssp ETTTT---EEEEEEE-CSSCEEEEEECTTSSEEEEEET---TSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEE-
T ss_pred ECCCC---ceEeeec-CCCceEEEEECCCCCEEEEEcC---CCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEE-
Confidence 99987 5555554 7889999999999966655443 99999999999887655555588999999999999999
Q ss_pred eccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 399 HGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 399 ~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|++.
T Consensus 283 -~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 283 -TGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp -EETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred -ecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 788999999999999887554 478899999999999999999999999999973
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-41 Score=306.60 Aligned_cols=279 Identities=15% Similarity=0.254 Sum_probs=241.5
Q ss_pred cceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 166 FYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 166 ~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
..|.+++|+|++ +++++.|+.|++||+.+++....+.. |..+|.+++|+|++++|+++ +.|+.|++||+.+++.
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~-s~d~~i~vwd~~~~~~ 89 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV---TETPVRAGKFIARKNWIIVG-SDDFRIRVFNYNTGEK 89 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC---CSSCEEEEEEEGGGTEEEEE-ETTSEEEEEETTTCCE
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeec---cCCcEEEEEEeCCCCEEEEE-CCCCEEEEEECCCCcE
Confidence 348899999998 77778999999999998887655554 88999999999999999999 9999999999999999
Q ss_pred EEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC-CCCEEEEEe-CCcEEEEE
Q psy8285 244 IQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP-NGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d 319 (507)
+..+.+|...|.+++| ++++|++++.|++|++||+++.......+.+|...|.+++|+| ++.+|++++ |+.|++||
T Consensus 90 ~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd 169 (304)
T 2ynn_A 90 VVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169 (304)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred EEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 9999999999999999 6889999999999999999887555667889999999999999 678999999 79999999
Q ss_pred cCCCCCCCCeeee-cCCCCCeeEEEEccCC-CcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEE
Q psy8285 320 FRQLDAKRPQVNN-QCHLSAVKAIAWCPWE-PTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELV 396 (507)
Q Consensus 320 ~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~ 396 (507)
++.. .+...+ ..|...+..+.|+|.. ..++++++. |++|++||+++++++..+..+ ..+.+++|+|++++|+
T Consensus 170 ~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~--D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~ 244 (304)
T 2ynn_A 170 LGQS---TPNFTLTTGQERGVNYVDYYPLPDKPYMITASD--DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244 (304)
T ss_dssp TTCS---SCSEEEECCCTTCEEEEEECCSTTCCEEEEEET--TSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEE
T ss_pred CCCC---CccceeccCCcCcEEEEEEEEcCCCCEEEEEcC--CCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEE
Confidence 9876 333333 4566889999998732 245666654 999999999999999999877 7899999999999999
Q ss_pred EEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCC--EEEEEeCCCcEEEEecCCC
Q psy8285 397 TSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT--CVAAASADETISIWNCFPR 456 (507)
Q Consensus 397 ~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~ 456 (507)
+ |+.||.|++||+.+++.+..+..|...+.+++|+|++. ++++|+.| .+.+|++...
T Consensus 245 s--~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~~ 303 (304)
T 2ynn_A 245 S--GSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGND 303 (304)
T ss_dssp E--EETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC--
T ss_pred E--EcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEeccC
Confidence 9 88999999999999999999999999999999999875 57777655 5788887653
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-41 Score=309.32 Aligned_cols=279 Identities=16% Similarity=0.288 Sum_probs=241.2
Q ss_pred ccceeeeeeCCCC---EEEEEcCCeEEEEECCCCce---eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 165 DFYTSGLDWGYHD---TLAVALDTSVYTWNTKTNKT---QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 165 ~~~i~~~~~s~~~---~~~~~~~~~i~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
...|.+++|+|++ +++++.|+.|++|++..... .....+.+ |...|.+++|+|++++|+++ +.|++|++||+
T Consensus 17 ~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~dg~~l~s~-s~D~~v~~wd~ 94 (319)
T 3frx_A 17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG-HSHIVQDCTLTADGAYALSA-SWDKTLRLWDV 94 (319)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEE-ETTSEEEEEET
T ss_pred cceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeC-CcccEEEEEECCCCCEEEEE-eCCCEEEEEEC
Confidence 4458899999853 77788999999999864321 23445666 99999999999999999999 99999999999
Q ss_pred CCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCC------CCEEEEE
Q psy8285 239 QEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN------GRYLASG 310 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~ 310 (507)
.+++.+..+.+|...|.+++| ++.+|++++.|+.|++||++.. ....+.+|...|.++.|+|. +..++++
T Consensus 95 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~ 172 (319)
T 3frx_A 95 ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ--CLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172 (319)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECCC------CCEEEEE
T ss_pred CCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eEEEEeccCCcEEEEEEccCCCCCCCccEEEEE
Confidence 999999999999999999999 6889999999999999999753 46677889999999999985 4478888
Q ss_pred e-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEEC
Q psy8285 311 S-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWS 389 (507)
Q Consensus 311 ~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s 389 (507)
+ |+.|++||++.. +....+.+|...|.+++|+|++.. +++++. |+.|++||+.+++++..+..+..+.+++|+
T Consensus 173 ~~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~sp~g~~-l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s 246 (319)
T 3frx_A 173 GNDKMVKAWNLNQF---QIEADFIGHNSNINTLTASPDGTL-IASAGK--DGEIMLWNLAAKKAMYTLSAQDEVFSLAFS 246 (319)
T ss_dssp ETTSCEEEEETTTT---EEEEEECCCCSCEEEEEECTTSSE-EEEEET--TCEEEEEETTTTEEEEEEECCSCEEEEEEC
T ss_pred eCCCEEEEEECCcc---hhheeecCCCCcEEEEEEcCCCCE-EEEEeC--CCeEEEEECCCCcEEEEecCCCcEEEEEEc
Confidence 8 699999999987 677788899999999999999954 455544 999999999999999999888899999999
Q ss_pred CCCCeEEEEeccCCCeEEEEeCCCccEEEEee--------ccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 390 EQYRELVTSHGKQDCSLKMWEYPRLHLIEELK--------IHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 390 ~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~--------~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
|++.++++ +. ++.+++|++.....+..+. .|...+.+++|+|||++|++|+.||.|++|++.+.
T Consensus 247 p~~~~la~--~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 247 PNRYWLAA--AT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SSSSEEEE--EE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CCCCEEEE--Ec-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 99999988 44 4569999998877766654 34567899999999999999999999999998764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=316.24 Aligned_cols=280 Identities=18% Similarity=0.314 Sum_probs=234.2
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|+||.+.|+||+|+|++++ |+||+ .|++|+|||..+++....+. +...
T Consensus 60 l~gH~~~V~~~~~s~d~~~-l~s~s--~Dg~v~vWd~~~~~~~~~~~~~~~~---------------------------- 108 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRR-IVSSS--QDGKVIVWDSFTTNKEHAVTMPCTW---------------------------- 108 (354)
T ss_dssp EECCSSCEEEEEECTTSSE-EEEEE--TTSEEEEEETTTCCEEEEEECSSSC----------------------------
T ss_pred ecCCCCeEEEEEECCCCCE-EEEEe--CCCeEEEEECCCCCcceEEecCCCC----------------------------
Confidence 6799999999999999986 89998 89999999998887655433 1111
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 109 -------------------------------------------------------------------------------- 108 (354)
T 2pbi_B 109 -------------------------------------------------------------------------------- 108 (354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCc----eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEE
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNK----TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYID 234 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~ 234 (507)
+.+++|+|++ +++++.|+.+++|++.... ......+.+ |...|.+++|+|++..|+++ +.|++|+
T Consensus 109 -------v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~t~-s~D~~v~ 179 (354)
T 2pbi_B 109 -------VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAM-HTNYLSACSFTNSDMQILTA-SGDGTCA 179 (354)
T ss_dssp -------CCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEE-CSSCEEEEEECSSSSEEEEE-ETTSEEE
T ss_pred -------EEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeec-cCCcEEEEEEeCCCCEEEEE-eCCCcEE
Confidence 3356777776 5666799999999986532 111222334 89999999999999999999 9999999
Q ss_pred EEeCCCceeEEEEeecCccEEEEEe----eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEE
Q psy8285 235 LWHEQEERLIQKLRTHMHQVIAMCW----NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASG 310 (507)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 310 (507)
+||+.+++.+..+.+|...|.+++| ++++|++++.||.|++||+++++ ....+..|...|.+++|+|++++|+++
T Consensus 180 lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~-~~~~~~~h~~~v~~v~~~p~~~~l~s~ 258 (354)
T 2pbi_B 180 LWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ-CVQAFETHESDVNSVRYYPSGDAFASG 258 (354)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCeEEEEEeCCCCEEEEE
Confidence 9999999999999999999999988 36899999999999999999876 566788899999999999999999999
Q ss_pred e-CCcEEEEEcCCCCCCCCeeeecC--CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEE
Q psy8285 311 S-NNTVKIWDFRQLDAKRPQVNNQC--HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSI 386 (507)
Q Consensus 311 ~-d~~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~ 386 (507)
+ |++|++||++.. ..+..+.. +...+.+++|+|++..+ ++++. |+.|++||+.+++.+..+..+ ..|.++
T Consensus 259 s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~~~~~s~~g~~l-~~g~~--d~~i~vwd~~~~~~~~~l~~h~~~v~~l 332 (354)
T 2pbi_B 259 SDDATCRLYDLRAD---REVAIYSKESIIFGASSVDFSLSGRLL-FAGYN--DYTINVWDVLKGSRVSILFGHENRVSTL 332 (354)
T ss_dssp ETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEECTTSSEE-EEEET--TSCEEEEETTTCSEEEEECCCSSCEEEE
T ss_pred eCCCeEEEEECCCC---cEEEEEcCCCcccceeEEEEeCCCCEE-EEEEC--CCcEEEEECCCCceEEEEECCCCcEEEE
Confidence 9 699999999876 44444432 33578999999999554 44544 999999999999988888776 789999
Q ss_pred EECCCCCeEEEEeccCCCeEEEEe
Q psy8285 387 LWSEQYRELVTSHGKQDCSLKMWE 410 (507)
Q Consensus 387 ~~s~~~~~l~~~~g~~d~~i~v~d 410 (507)
+|+|++++|++ |+.|+.|++|+
T Consensus 333 ~~spdg~~l~s--gs~D~~v~vW~ 354 (354)
T 2pbi_B 333 RVSPDGTAFCS--GSWDHTLRVWA 354 (354)
T ss_dssp EECTTSSCEEE--EETTSEEEEEC
T ss_pred EECCCCCEEEE--EcCCCCEEecC
Confidence 99999999999 88999999996
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=327.31 Aligned_cols=286 Identities=18% Similarity=0.312 Sum_probs=235.6
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|+||.+.|++++|+|+|++ |+||+ .|++|+|||+.+++++.++. |...|.
T Consensus 62 l~gH~~~V~~~~~sp~~~~-l~s~s--~D~~v~iWd~~~~~~~~~~~~h~~~v~-------------------------- 112 (380)
T 3iz6_a 62 LQGHSGKVYSLDWTPEKNW-IVSAS--QDGRLIVWNALTSQKTHAIKLHCPWVM-------------------------- 112 (380)
T ss_dssp ECCCSSCEEEEEECTTSSC-EEEEE--TTSEEEEEETTTTEEEEEEECCCTTCC--------------------------
T ss_pred ccccccEEEEEEEcCCCCE-EEEEe--CCCeEEEEECCCCccceEEecCCCCEE--------------------------
Confidence 6899999999999999987 88998 89999999999998776655 333333
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 113 -------------------------------------------------------------------------------- 112 (380)
T 3iz6_a 113 -------------------------------------------------------------------------------- 112 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCc-----eeEEEecCCCCCCceEEEEEccCC-CeEEEEeCCCCc
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNK-----TQLLVEYPTYDNAYISCVAWKPRT-TDLAVTNTCTEY 232 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~dg~ 232 (507)
+++|+|++ +++++.|+.+++|++.+.. ......+.+ |.+.|.++.|+|++ ..|+++ +.|++
T Consensus 113 ---------~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~g-h~~~v~~~~~~~~~~~~l~s~-s~D~~ 181 (380)
T 3iz6_a 113 ---------ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTG-HKGYASSCQYVPDQETRLITG-SGDQT 181 (380)
T ss_dssp ---------CCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCC-CSSCCCCCBCCSSSSSCEEEE-CTTSC
T ss_pred ---------EEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccC-CCcceEEEEEecCCCCEEEEE-CCCCc
Confidence 35555655 5666799999999987532 112233456 99999999999975 467777 99999
Q ss_pred EEEEeCCCceeEEEE-----eecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCC
Q psy8285 233 IDLWHEQEERLIQKL-----RTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNG 304 (507)
Q Consensus 233 i~iwd~~~~~~~~~~-----~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 304 (507)
|++||+.+++.+..+ .+|...|.+++| ++++|++|+.|+.|++||++........+.+|...|.+++|+|++
T Consensus 182 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~ 261 (380)
T 3iz6_a 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261 (380)
T ss_dssp EEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS
T ss_pred EEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC
Confidence 999999999988877 578999999999 578999999999999999986555777888999999999999999
Q ss_pred CEEEEEe-CCcEEEEEcCCCCCCCCeeeecCC-------CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeee
Q psy8285 305 RYLASGS-NNTVKIWDFRQLDAKRPQVNNQCH-------LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH 376 (507)
Q Consensus 305 ~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 376 (507)
++|++++ |++|++||++++ ..+..+..+ ...|++++|+|++..+ ++++. |+.|++||+..++.+..
T Consensus 262 ~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l-~~g~~--dg~i~vwd~~~~~~~~~ 335 (380)
T 3iz6_a 262 QRFGTGSDDGTCRLFDMRTG---HQLQVYNREPDRNDNELPIVTSVAFSISGRLL-FAGYS--NGDCYVWDTLLAEMVLN 335 (380)
T ss_dssp SEEEEECSSSCEEEEETTTT---EEEEEECCCCSSSCCSSCSCSEEEECSSSSEE-EEECT--TSCEEEEETTTCCEEEE
T ss_pred CeEEEEcCCCeEEEEECCCC---cEEEEecccccccccccCceEEEEECCCCCEE-EEEEC--CCCEEEEECCCCceEEE
Confidence 9999999 699999999987 555544432 2348999999999654 45544 99999999999988776
Q ss_pred e----ecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc
Q psy8285 377 V----KTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 377 ~----~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~ 415 (507)
+ ..+ ..|.+++|+|+|++|++ |+.|+.|++|++...+
T Consensus 336 ~~~~~~~h~~~v~~l~~s~dg~~l~s--gs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 336 LGTLQNSHEGRISCLGLSSDGSALCT--GSWDKNLKIWAFSGHR 377 (380)
T ss_dssp ECCSCSSCCCCCCEEEECSSSSEEEE--ECTTSCEEEEECCSSS
T ss_pred EecccCCCCCceEEEEECCCCCEEEE--eeCCCCEEEEecCCCc
Confidence 6 333 68999999999999999 8999999999987654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-42 Score=375.48 Aligned_cols=443 Identities=15% Similarity=0.191 Sum_probs=314.9
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
+.+|.+.|++++|+|+|++ |++|+ .|++|+|||+.+++++.++. |...|.++.|+++........ .
T Consensus 653 ~~~h~~~v~~~~~s~~~~~-l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s-g--------- 719 (1249)
T 3sfz_A 653 IKAHEDEVLCCAFSSDDSY-IATCS--ADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLAT-G--------- 719 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSE-EEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEE-E---------
T ss_pred eccCCCCEEEEEEecCCCE-EEEEe--CCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEE-E---------
Confidence 5689999999999999997 88888 79999999999999999988 889999999998654322111 1
Q ss_pred CCcccccccccccccccc--------Cch--hHHHHHHhhhhhhcccccccccceeEecCCCCCc-----------cccc
Q psy8285 81 SSYDSLCSHYLLQQANDE--------TIS--YREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSP-----------TQFL 139 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 139 (507)
..|..+..|++...... .+. .+... .. ....+...+..++|......... ....
T Consensus 720 -~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~-~~---~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 794 (1249)
T 3sfz_A 720 -SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD-DE---LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP 794 (1249)
T ss_dssp -ETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSS-TT---EEEEEESSSEEEEEEGGGTEEEEEEECCCCC-------
T ss_pred -eCCCeEEEEECCCcchhheecCCCCCEEEEEEecC-CC---EEEEEECCCeEEEEeCCCCcccceecccccccccCCcc
Confidence 12222333332221100 000 00000 00 11112222345666554321000 0000
Q ss_pred ccCCCCCccccCCchh------------hhcCC--------CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCce
Q psy8285 140 RTLGKLPRKVKAKPER------------ILEAP--------SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKT 197 (507)
Q Consensus 140 ~~~~~~~~~~~~~~~~------------~~~~~--------~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~ 197 (507)
.........+...|.. +++.. .......+.+++|+|++ +++++.++.|++|++.++..
T Consensus 795 ~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~ 874 (1249)
T 3sfz_A 795 EDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK 874 (1249)
T ss_dssp -CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEE
T ss_pred ccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCce
Confidence 0000000000000000 00000 00223457889999987 55667999999999998876
Q ss_pred eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC--------------------------------------
Q psy8285 198 QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ-------------------------------------- 239 (507)
Q Consensus 198 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~-------------------------------------- 239 (507)
.... .+ |...|.+++|+|+++.++++ +.||.|++||+.
T Consensus 875 ~~~~--~~-h~~~v~~v~~spdg~~l~s~-s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 950 (1249)
T 3sfz_A 875 VADC--RG-HLSWVHGVMFSPDGSSFLTA-SDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950 (1249)
T ss_dssp EEEE--CC-CSSCEEEEEECTTSSEEEEE-ETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEE
T ss_pred eeec--CC-CccceEEEEECCCCCEEEEE-eCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEe
Confidence 5444 44 88899999999999888888 888888888743
Q ss_pred -----------------------------------------CceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEE
Q psy8285 240 -----------------------------------------EERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHY 276 (507)
Q Consensus 240 -----------------------------------------~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~ 276 (507)
+++....+.+|...|.+++| ++++|++++.||.|++|
T Consensus 951 ~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vw 1030 (1249)
T 3sfz_A 951 GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030 (1249)
T ss_dssp ESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEE
T ss_pred cCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 22333445568888999999 78899999999999999
Q ss_pred ECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEc
Q psy8285 277 DVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 277 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
|+.+++ ......|...+.+++|+|++.+++.+.|+.|++||+.++ +....+.+|...|.+++|+|++..+++.+.
T Consensus 1031 d~~~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~ 1105 (1249)
T 3sfz_A 1031 NWQTGD--YVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG---RIERDFTCHQGTVLSCAISSDATKFSSTSA 1105 (1249)
T ss_dssp ETTTTE--EECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTT---CCCEEEECCSSCCCCEEECSSSSSCEEECC
T ss_pred ECCCCc--eEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCC---ceeEEEcccCCcEEEEEECCCCCEEEEEcC
Confidence 999875 335668899999999999876555555899999999988 788888899999999999999976655443
Q ss_pred cCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEe---------eccccc
Q psy8285 357 GICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEEL---------KIHQER 426 (507)
Q Consensus 357 ~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~---------~~~~~~ 426 (507)
|++|++||+.+++++..+..+ ..|++++|+|++++|++ ++.||.|++||+.+++.+..+ ..|.+.
T Consensus 1106 ---d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 1180 (1249)
T 3sfz_A 1106 ---DKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLAT--GDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW 1180 (1249)
T ss_dssp ---SSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEE--EETTSCCCEEESSSSCCCCCCCCCC-------CCSC
T ss_pred ---CCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEE--EeCCCEEEEEECCCCceEEEeccccccccccccCce
Confidence 999999999999998888876 68999999999999999 889999999999998877665 578899
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEecCCCCccccee-ecCCCcceEEeeccC
Q psy8285 427 ILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR-QVGSGSSLEFAILKQ 478 (507)
Q Consensus 427 i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 478 (507)
|++++|+||+++|++++ |.|++||+.+++...... ....+..+.|+++..
T Consensus 1181 v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~ 1231 (1249)
T 3sfz_A 1181 VTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFR 1231 (1249)
T ss_dssp CCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSC
T ss_pred EEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeeccCCcccEEEECCCCC
Confidence 99999999999999886 899999999988877654 334456666766543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=318.68 Aligned_cols=283 Identities=15% Similarity=0.219 Sum_probs=224.5
Q ss_pred ccceeeeeeCCCC-EE-EEEc------CCeEEEEECCCCceeEE--EecCCCCCCceEEEEEccCCCeEEEEeCCCCcEE
Q psy8285 165 DFYTSGLDWGYHD-TL-AVAL------DTSVYTWNTKTNKTQLL--VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYID 234 (507)
Q Consensus 165 ~~~i~~~~~s~~~-~~-~~~~------~~~i~iw~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~ 234 (507)
...|++++||||| +| +++. |+.|++|+..++..... ....+ |...|.+++|+|++.+ +++ +.||+|+
T Consensus 42 ~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~s~d~~~-l~~-s~dg~v~ 118 (357)
T 4g56_B 42 EVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQ-TEAGVTDVAWVSEKGI-LVA-SDSGAVE 118 (357)
T ss_dssp CSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEE-CSSCEEEEEEETTTEE-EEE-ETTSCEE
T ss_pred cCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCC-CCCCEEEEEEcCCCCE-EEE-ECCCEEE
Confidence 4468999999999 44 4454 67899999877654221 11223 7889999999999855 455 6899999
Q ss_pred EEeCCCceeEE----EEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC-EE
Q psy8285 235 LWHEQEERLIQ----KLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR-YL 307 (507)
Q Consensus 235 iwd~~~~~~~~----~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l 307 (507)
|||+.+++... ...+|...|.+++| ++++|++++.|+.|++||+++++ ....+..|...|++++|+|++. ++
T Consensus 119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 119 LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA-VLKSYNAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTCSSCE
T ss_pred EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEccCCCcee
Confidence 99998876543 34479999999999 78999999999999999999875 6677889999999999999875 67
Q ss_pred EEEe-CCcEEEEEcCCCCCCCCeee--ecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCe
Q psy8285 308 ASGS-NNTVKIWDFRQLDAKRPQVN--NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQV 383 (507)
Q Consensus 308 ~~~~-d~~i~i~d~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i 383 (507)
++++ |+.|++||++++ ++... ...+...+.+++|+|++..++++++. |+.|++||+++++++..+..+ ..|
T Consensus 198 ~s~~~dg~v~~wd~~~~---~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~--d~~i~~wd~~~~~~~~~~~~~~~~v 272 (357)
T 4g56_B 198 LSCGEDGRILLWDTRKP---KPATRIDFCASDTIPTSVTWHPEKDDTFACGDE--TGNVSLVNIKNPDSAQTSAVHSQNI 272 (357)
T ss_dssp EEEETTSCEEECCTTSS---SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES--SSCEEEEESSCGGGCEEECCCSSCE
T ss_pred eeeccCCceEEEECCCC---ceeeeeeeccccccccchhhhhcccceEEEeec--ccceeEEECCCCcEeEEEeccceeE
Confidence 7777 699999999987 44333 34467789999999998888888875 999999999999999888876 689
Q ss_pred EEEEECCCCC-eEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECC-CCCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 384 TSILWSEQYR-ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSP-DQTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 384 ~~~~~s~~~~-~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
++++|+|++. +|++ |+.|+.|+|||+++++.+..+ +|...|++++|+| ++++|++++.||+|++|++....+.
T Consensus 273 ~~l~~sp~~~~~las--gs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 273 TGLAYSYHSSPFLAS--ISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp EEEEECSSSSCCEEE--EETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred EEEEEcCCCCCEEEE--EeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 9999999985 6777 889999999999998887655 7999999999998 7999999999999999999765443
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=311.30 Aligned_cols=241 Identities=17% Similarity=0.315 Sum_probs=211.2
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY 284 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 284 (507)
|...|.+++|+|++++|+++ +.|+.|++|+............+...+..+.+ ++..|++++.|+.+++||+......
T Consensus 85 h~~~V~~~~~s~dg~~l~s~-~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~ 163 (340)
T 4aow_A 85 HSHFVSDVVISSDGQFALSG-SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY 163 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE
T ss_pred CCCCEEEEEECCCCCEEEEE-cccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceE
Confidence 88999999999999999999 99999999999999988888888888888888 6889999999999999999876645
Q ss_pred ceeeecCCCceEEEEEcCCC--CEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC
Q psy8285 285 PTAITREGDVVCGLKWSPNG--RYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ 361 (507)
Q Consensus 285 ~~~~~~~~~~v~~~~~~~~~--~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~ 361 (507)
......|...+..++|++++ .++++++ |+.|++||++++ +....+.+|...|++++|+|+++. +++++. |+
T Consensus 164 ~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~---~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~--Dg 237 (340)
T 4aow_A 164 TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC---KLKTNHIGHTGYLNTVTVSPDGSL-CASGGK--DG 237 (340)
T ss_dssp EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSE-EEEEET--TC
T ss_pred EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC---ceeeEecCCCCcEEEEEECCCCCE-EEEEeC--CC
Confidence 55667889999999999865 4677777 699999999987 788888899999999999999854 455544 99
Q ss_pred eEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee---------ccccceeEEEE
Q psy8285 362 TVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK---------IHQERILSAVL 432 (507)
Q Consensus 362 ~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~---------~~~~~i~~~~~ 432 (507)
.|++||+++.+++..+..+..+.+++|+|++.++++ +.|+.|++||++++..+..+. +|...|++++|
T Consensus 238 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 314 (340)
T 4aow_A 238 QAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA---ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAW 314 (340)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEE---EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEE
T ss_pred eEEEEEeccCceeeeecCCceEEeeecCCCCceeec---cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEE
Confidence 999999999999999998899999999998876654 469999999999887766553 57889999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 433 SPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 433 s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
+|++++|++|+.||.|+|||+.+++
T Consensus 315 s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 315 SADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp CTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 9999999999999999999999875
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=322.47 Aligned_cols=281 Identities=20% Similarity=0.311 Sum_probs=241.4
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
...|.+++|+|++ +++++.|+.|++||..+++....+.. |...|.+++|+|++++|+++ +.|+.+++||+.+..
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~---h~~~v~~~~~s~~g~~las~-~~d~~v~iw~~~~~~ 141 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL---HCPWVMECAFAPNGQSVACG-GLDSACSIFNLSSQA 141 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC---CCTTCCCCEECTTSSEEEEC-CSSSCCEEEECCCCS
T ss_pred ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec---CCCCEEEEEECCCCCEEEEe-eCCCcEEEEECCCCc
Confidence 4468999999987 77888999999999999887665554 88999999999999999999 999999999987532
Q ss_pred -------eEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceee-----ecCCCceEEEEEcC-CCCE
Q psy8285 243 -------LIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAI-----TREGDVVCGLKWSP-NGRY 306 (507)
Q Consensus 243 -------~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~ 306 (507)
....+.+|...+.++.| ++..|++++.|++|++||+++++. ...+ .+|...|.+++|++ ++++
T Consensus 142 ~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 220 (380)
T 3iz6_a 142 DRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLNANM 220 (380)
T ss_dssp SCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-EEEECCCSSSSCCSCEEEEEECSSSCCE
T ss_pred cccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-EEEeecccCCCCccCeEEEEeecCCCCE
Confidence 34457789999999999 356899999999999999998762 3333 57889999999987 8899
Q ss_pred EEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-----
Q psy8285 307 LASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD----- 380 (507)
Q Consensus 307 l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----- 380 (507)
|++|+ |+.|++||++.. ...+..+.+|...|.+++|+|++. ++++++. |++|++||+++++++..+..+
T Consensus 221 l~sgs~D~~v~~wd~~~~--~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~--D~~i~lwd~~~~~~~~~~~~~~~~~~ 295 (380)
T 3iz6_a 221 FISGSCDTTVRLWDLRIT--SRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSD--DGTCRLFDMRTGHQLQVYNREPDRND 295 (380)
T ss_dssp EEEEETTSCEEEEETTTT--CCCCEEECCCSSCCCEEEECTTSS-EEEEECS--SSCEEEEETTTTEEEEEECCCCSSSC
T ss_pred EEEEECCCeEEEEECCCC--CcceEEECCcCCCeEEEEEecCCC-eEEEEcC--CCeEEEEECCCCcEEEEecccccccc
Confidence 99999 799999999843 156778889999999999999985 5555554 999999999999988776543
Q ss_pred ---CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEe----eccccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 381 ---SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEEL----KIHQERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 381 ---~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~----~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
..+.+++|+|+|++|++ |+.||.|++||+.+++.+..+ .+|.+.|++++|+|+|++|++|+.|++|++|++
T Consensus 296 ~~~~~v~~~~~s~~g~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 296 NELPIVTSVAFSISGRLLFA--GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp CSSCSCSEEEECSSSSEEEE--ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred cccCceEEEEECCCCCEEEE--EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 23889999999999999 889999999999999888777 679999999999999999999999999999999
Q ss_pred CCCC
Q psy8285 454 FPRD 457 (507)
Q Consensus 454 ~~~~ 457 (507)
...+
T Consensus 374 ~~~~ 377 (380)
T 3iz6_a 374 SGHR 377 (380)
T ss_dssp CSSS
T ss_pred CCCc
Confidence 8654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-41 Score=312.54 Aligned_cols=287 Identities=20% Similarity=0.325 Sum_probs=232.5
Q ss_pred ceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEe-cCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc--
Q psy8285 167 YTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVE-YPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE-- 241 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~-- 241 (507)
.+.+++|+|++ +++++.|+.|++|++.+++...... ..+ |...|.+++|+|++++|+++ +.|+.+++||+.++
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~-s~D~~v~iw~~~~~~~ 95 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEG-HQRTVRKVAWSPCGNYLASA-SFDATTCIWKKNQDDF 95 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSS-CSSCEEEEEECTTSSEEEEE-ETTSCEEEEEECCC-E
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccc-cCCcEEEEEECCCCCEEEEE-ECCCcEEEEEccCCCe
Confidence 47789999998 6677899999999998876543333 355 99999999999999999999 99999999998876
Q ss_pred eeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc--CceeeecCCCceEEEEEcCCCCEEEEEe-CCcEE
Q psy8285 242 RLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD--YPTAITREGDVVCGLKWSPNGRYLASGS-NNTVK 316 (507)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~ 316 (507)
+.+..+.+|...|.+++| ++++|++++.|+.|++||++.... ....+..|...|.+++|+|++++|++++ |+.|+
T Consensus 96 ~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~ 175 (345)
T 3fm0_A 96 ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK 175 (345)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEE
T ss_pred EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEE
Confidence 457788899999999999 689999999999999999987642 2446678999999999999999999999 69999
Q ss_pred EEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC---------------Ceeeeeec--
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG---------------KEKCHVKT-- 379 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---------------~~~~~~~~-- 379 (507)
+||.+.+. ..+...+.+|...|++++|+|++..+ ++++. |++|++||.... +++..+..
T Consensus 176 ~w~~~~~~-~~~~~~~~~h~~~v~~l~~sp~g~~l-~s~s~--D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 251 (345)
T 3fm0_A 176 LYREEEDD-WVCCATLEGHESTVWSLAFDPSGQRL-ASCSD--DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFH 251 (345)
T ss_dssp EEEEETTE-EEEEEEECCCSSCEEEEEECTTSSEE-EEEET--TSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSC
T ss_pred EEEecCCC-EEEEEEecCCCCceEEEEECCCCCEE-EEEeC--CCeEEEeccccCCCCccceeeccCCccceeEEecCCC
Confidence 99998651 12346778899999999999999554 55544 999999996332 12223332
Q ss_pred CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc---------EEEEeeccccceeEEEECCCC-CEEEEEeCCCcEE
Q psy8285 380 DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH---------LIEELKIHQERILSAVLSPDQ-TCVAAASADETIS 449 (507)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~---------~~~~~~~~~~~i~~~~~s~~~-~~l~s~~~dg~i~ 449 (507)
...|.+++|+|++..|++ ++.|+.|++|+..... ......+|...|++++|+|++ .+|++++.||+|+
T Consensus 252 ~~~v~~v~~~~~~~~l~s--~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~ 329 (345)
T 3fm0_A 252 SRTIYDIAWCQLTGALAT--ACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVA 329 (345)
T ss_dssp SSCEEEEEECTTTCCEEE--EETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred CCcEEEEEEecCCCEEEE--EeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEE
Confidence 367999999999999999 7889999999986542 122345799999999999987 5999999999999
Q ss_pred EEecCCCCcccc
Q psy8285 450 IWNCFPRDKKRK 461 (507)
Q Consensus 450 iw~~~~~~~~~~ 461 (507)
+|++.++++...
T Consensus 330 ~W~~~~~~~~~~ 341 (345)
T 3fm0_A 330 FWKYQRPEGLHH 341 (345)
T ss_dssp EEEECC------
T ss_pred EEEecCCCCccc
Confidence 999998776554
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=352.31 Aligned_cols=384 Identities=13% Similarity=0.076 Sum_probs=267.2
Q ss_pred ccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeeecCcccceeeccccccccccCCccCCceeEeecCCc
Q psy8285 4 CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRESSRSKMVNTDRYVVDRSSY 83 (507)
Q Consensus 4 gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 83 (507)
.|...|++|+|+| |++ |++++ .|++|+|||+.+++++.++.+...|.++.|+|+++.+.+.. .
T Consensus 56 ~~~~~V~~l~fsp-g~~-L~S~s--~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs-------------~ 118 (902)
T 2oaj_A 56 EDRSAIKEMRFVK-GIY-LVVIN--AKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGL-------------Q 118 (902)
T ss_dssp SSCCCEEEEEEET-TTE-EEEEE--TTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEE-------------T
T ss_pred CCCCCEEEEEEcC-CCE-EEEEE--CcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEc-------------C
Confidence 5888999999999 785 88888 89999999999999999998888999999999887654421 2
Q ss_pred cccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCCCcc
Q psy8285 84 DSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSII 163 (507)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (507)
|..++.|++... .+..+. ++.. ...... ...
T Consensus 119 dg~V~lwd~~~~----------------------------~~~~~~-------------------i~~~-~~~~~~-~~~ 149 (902)
T 2oaj_A 119 NGSMIVYDIDRD----------------------------QLSSFK-------------------LDNL-QKSSFF-PAA 149 (902)
T ss_dssp TSCEEEEETTTT----------------------------EEEEEE-------------------ECCH-HHHHTC-SSS
T ss_pred CCcEEEEECCCC----------------------------ccccce-------------------eccc-cccccc-ccc
Confidence 233333433221 000000 0000 000000 001
Q ss_pred cccceeeeeeCCCC---EEEEEcCCeEEEEECCCCceeEEEecC---------------CCCCCceEEEEEccCCCeEEE
Q psy8285 164 NDFYTSGLDWGYHD---TLAVALDTSVYTWNTKTNKTQLLVEYP---------------TYDNAYISCVAWKPRTTDLAV 225 (507)
Q Consensus 164 ~~~~i~~~~~s~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~ 225 (507)
....|.+++|+|++ +++++.|+.| +||+.+++....+... ..|...|.+++|+|+|++|++
T Consensus 150 h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 228 (902)
T 2oaj_A 150 RLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIIT 228 (902)
T ss_dssp CCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEE
T ss_pred CCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEE
Confidence 12347889999963 5666689999 9999998876655432 013578999999999999999
Q ss_pred EeCCCCcEEEEeCCCceeEEE--Ee---e-------------cCccEEEEEe----e---CCEEEEEecC----------
Q psy8285 226 TNTCTEYIDLWHEQEERLIQK--LR---T-------------HMHQVIAMCW----N---GNLLSCGTIG---------- 270 (507)
Q Consensus 226 ~~~~dg~i~iwd~~~~~~~~~--~~---~-------------~~~~v~~~~~----~---~~~l~~~~~d---------- 270 (507)
+ +.||.|++||+.+++++.. +. . |...|.+++| + +.+|++|+.+
T Consensus 229 g-s~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~ 307 (902)
T 2oaj_A 229 I-HEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTM 307 (902)
T ss_dssp E-ETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEE
T ss_pred E-ECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEE
Confidence 9 9999999999998877653 21 1 2346888887 1 1345555433
Q ss_pred ------------------------------------------------------------------CeEEEEECCCCCcC
Q psy8285 271 ------------------------------------------------------------------GNILHYDVRTHSDY 284 (507)
Q Consensus 271 ------------------------------------------------------------------g~i~i~d~~~~~~~ 284 (507)
+.|++||+.++...
T Consensus 308 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~ 387 (902)
T 2oaj_A 308 IDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFT 387 (902)
T ss_dssp EEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEE
T ss_pred EecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcc
Confidence 33444444332100
Q ss_pred ce------ee----------------------------------ecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q psy8285 285 PT------AI----------------------------------TREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQL 323 (507)
Q Consensus 285 ~~------~~----------------------------------~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~ 323 (507)
.. .+ .+|...+.+++|+|++++|++|+ |++|++||+..+
T Consensus 388 ~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g 467 (902)
T 2oaj_A 388 DKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHG 467 (902)
T ss_dssp CCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCC
T ss_pred cccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCc
Confidence 00 01 12222333445578999999999 799999999886
Q ss_pred CCCC-Ceee--e-----cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC-----------------------
Q psy8285 324 DAKR-PQVN--N-----QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK----------------------- 372 (507)
Q Consensus 324 ~~~~-~~~~--~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~----------------------- 372 (507)
.... .... + .+|...|.+++|+|+++ ++++++. |++|++||+.+++
T Consensus 468 ~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~-~LAsgs~--DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (902)
T 2oaj_A 468 DIQDNASFEVNLSRTLNKAKELAVDKISFAAETL-ELAVSIE--TGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLN 544 (902)
T ss_dssp TTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTT-EEEEEET--TSCEEEEEEEECCC---------------CCSCCGG
T ss_pred cccCCceEEeechhhcCCCCCCceeEEEecCCCC-eEEEEec--CcEEEEEEecCccccCccccCCCcccceeeeecccc
Confidence 2211 1111 1 17889999999999995 5555554 9999999997663
Q ss_pred ----------------------eeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEE-----Eee-cc
Q psy8285 373 ----------------------EKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIE-----ELK-IH 423 (507)
Q Consensus 373 ----------------------~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~-----~~~-~~ 423 (507)
++..+..+ ..|++++|+|+| +||+ |+.|+.|++||+++...+. .+. +|
T Consensus 545 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAs--gs~D~tv~lwd~~~~~~~~~~~~~~~~~gh 621 (902)
T 2oaj_A 545 NTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGI--AYAAGSLMLIDRRGPAIIYMENIREISGAQ 621 (902)
T ss_dssp GSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEE--EETTSEEEEEETTTTEEEEEEEGGGTCSSC
T ss_pred CCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEE--EeCCCcEEEEECCCCeEEEEeehhHhcccc
Confidence 24555545 789999999999 9988 8899999999998877654 233 88
Q ss_pred ccceeEEEEC-----CCC---CEEEEEeCCCcEEEEec---CCCCcccc
Q psy8285 424 QERILSAVLS-----PDQ---TCVAAASADETISIWNC---FPRDKKRK 461 (507)
Q Consensus 424 ~~~i~~~~~s-----~~~---~~l~s~~~dg~i~iw~~---~~~~~~~~ 461 (507)
...|++++|+ ||| ++|++++.|++|++||+ .+++....
T Consensus 622 ~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~ 670 (902)
T 2oaj_A 622 SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQ 670 (902)
T ss_dssp CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEE
T ss_pred ccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEE
Confidence 9999999999 885 89999999999999999 55554443
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=307.80 Aligned_cols=231 Identities=13% Similarity=0.227 Sum_probs=196.3
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
|.+++|+|++ +++++.|+.|++||+.+++....+. + |...|.+++|+|++.+|+++ +.|+.|++||++ ++.+.
T Consensus 68 v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~--~-h~~~v~~~~~~~~~~~l~s~-s~D~~i~vwd~~-~~~~~ 142 (319)
T 3frx_A 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--G-HKSDVMSVDIDKKASMIISG-SRDKTIKVWTIK-GQCLA 142 (319)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--C-CSSCEEEEEECTTSCEEEEE-ETTSCEEEEETT-SCEEE
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEc--c-CCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECC-CCeEE
Confidence 5567788876 6778899999999999988765544 4 99999999999999999999 999999999986 46778
Q ss_pred EEeecCccEEEEEee--------CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEE
Q psy8285 246 KLRTHMHQVIAMCWN--------GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVK 316 (507)
Q Consensus 246 ~~~~~~~~v~~~~~~--------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~ 316 (507)
.+.+|...+.++.|. +..|++++.|+.|++||+++.+ ....+.+|...|.+++|+|++++|++++ |+.|+
T Consensus 143 ~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~ 221 (319)
T 3frx_A 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-IEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221 (319)
T ss_dssp EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE-EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 888999999999992 3489999999999999998865 5567788999999999999999999999 69999
Q ss_pred EEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec---------CCCeEEEE
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT---------DSQVTSIL 387 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---------~~~i~~~~ 387 (507)
+||++.+ +.+..+. +...|.+++|+|++ .+++++. +..+++|++..+..+..+.. ...+.+++
T Consensus 222 iwd~~~~---~~~~~~~-~~~~v~~~~~sp~~-~~la~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 293 (319)
T 3frx_A 222 LWNLAAK---KAMYTLS-AQDEVFSLAFSPNR-YWLAAAT---ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLA 293 (319)
T ss_dssp EEETTTT---EEEEEEE-CCSCEEEEEECSSS-SEEEEEE---TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEE
T ss_pred EEECCCC---cEEEEec-CCCcEEEEEEcCCC-CEEEEEc---CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEE
Confidence 9999987 6666666 45689999999998 4555565 67799999988776655532 24689999
Q ss_pred ECCCCCeEEEEeccCCCeEEEEeCCCc
Q psy8285 388 WSEQYRELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 388 ~s~~~~~l~~~~g~~d~~i~v~d~~~~ 414 (507)
|+|+|++|++ |+.|+.|++||+.++
T Consensus 294 ~spdg~~l~s--g~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 294 WSADGQTLFA--GYTDNVIRVWQVMTA 318 (319)
T ss_dssp ECTTSSEEEE--EETTSCEEEEEEEEC
T ss_pred ECCCCCEEEE--eecCceEEEEEEeec
Confidence 9999999999 889999999998653
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-40 Score=311.95 Aligned_cols=281 Identities=19% Similarity=0.315 Sum_probs=235.5
Q ss_pred ccceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCC---------------CCCCceEEEEEccCCCeEEEEeC
Q psy8285 165 DFYTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPT---------------YDNAYISCVAWKPRTTDLAVTNT 228 (507)
Q Consensus 165 ~~~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~ 228 (507)
...|.+++|+|++ +++.+.++.+++|++.+++....+.... .+...|.+++|+|++++|+++ +
T Consensus 64 ~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~-~ 142 (393)
T 1erj_A 64 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG-A 142 (393)
T ss_dssp SSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE-E
T ss_pred CCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE-c
Confidence 4468899999998 7777888999999999988765443210 022349999999999999999 9
Q ss_pred CCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC-CCC
Q psy8285 229 CTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP-NGR 305 (507)
Q Consensus 229 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 305 (507)
.|+.|++||+.+++.+..+.+|...|.+++| ++++|++++.|+.|++||+++++ .... ..+...+.+++|+| +++
T Consensus 143 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~-~~~~-~~~~~~v~~~~~~~~~~~ 220 (393)
T 1erj_A 143 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-CSLT-LSIEDGVTTVAVSPGDGK 220 (393)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEE-EECSSCEEEEEECSTTCC
T ss_pred CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe-eEEE-EEcCCCcEEEEEECCCCC
Confidence 9999999999999999999999999999999 68999999999999999999875 2333 34667899999999 899
Q ss_pred EEEEEe-CCcEEEEEcCCCCCCCCeeee-------cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC-----
Q psy8285 306 YLASGS-NNTVKIWDFRQLDAKRPQVNN-------QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK----- 372 (507)
Q Consensus 306 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~----- 372 (507)
+|++++ |+.|++||++++ ..+..+ .+|...|.+++|+|++..+ ++++. |+.|++||+++..
T Consensus 221 ~l~~~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l-~s~s~--d~~v~~wd~~~~~~~~~~ 294 (393)
T 1erj_A 221 YIAAGSLDRAVRVWDSETG---FLVERLDSENESGTGHKDSVYSVVFTRDGQSV-VSGSL--DRSVKLWNLQNANNKSDS 294 (393)
T ss_dssp EEEEEETTSCEEEEETTTC---CEEEEEC------CCCSSCEEEEEECTTSSEE-EEEET--TSEEEEEEC---------
T ss_pred EEEEEcCCCcEEEEECCCC---cEEEeecccccCCCCCCCCEEEEEECCCCCEE-EEEeC--CCEEEEEECCCCCCcccc
Confidence 999999 699999999887 444444 5689999999999999655 45544 9999999997642
Q ss_pred -------eeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECC------CCCE
Q psy8285 373 -------EKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSP------DQTC 438 (507)
Q Consensus 373 -------~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~------~~~~ 438 (507)
+...+..+ ..|.+++|+|++++|++ |+.|+.|++||..+++++..+.+|...|.+++|++ ++++
T Consensus 295 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s--gs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~ 372 (393)
T 1erj_A 295 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS--GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 372 (393)
T ss_dssp ------CEEEEEECCSSCEEEEEECGGGCEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEE
T ss_pred cCCCCCcceEEEecccCcEEEEEECCCCCEEEE--EeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCE
Confidence 34445555 67999999999999999 88999999999999999999999999999999986 6789
Q ss_pred EEEEeCCCcEEEEecCCC
Q psy8285 439 VAAASADETISIWNCFPR 456 (507)
Q Consensus 439 l~s~~~dg~i~iw~~~~~ 456 (507)
|++|+.||+|++|++...
T Consensus 373 l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 373 FATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEETTSEEEEEEEEEC
T ss_pred EEEECCCCcEEECccccc
Confidence 999999999999998654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=310.03 Aligned_cols=246 Identities=19% Similarity=0.388 Sum_probs=194.5
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc---e
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE---R 242 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~---~ 242 (507)
|.+++|+|++ +++++.|+.+++|+...+.......+.+ |...|.+++|+|++++|+++ +.|+.|++||+.++ +
T Consensus 64 v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s~-s~D~~v~iwd~~~~~~~~ 141 (345)
T 3fm0_A 64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEG-HENEVKSVAWAPSGNLLATC-SRDKSVWVWEVDEEDEYE 141 (345)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECC-CSSCEEEEEECTTSSEEEEE-ETTSCEEEEEECTTSCEE
T ss_pred EEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccC-CCCCceEEEEeCCCCEEEEE-ECCCeEEEEECCCCCCeE
Confidence 5678888877 6677899999999998887666677777 99999999999999999999 99999999999876 3
Q ss_pred eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc-CceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEE
Q psy8285 243 LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD-YPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIW 318 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~ 318 (507)
.+..+..|...|.+++| ++++|++++.|+.|++||.+..+. ....+.+|...|.+++|+|++++|++++ |++|++|
T Consensus 142 ~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW 221 (345)
T 3fm0_A 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221 (345)
T ss_dssp EEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEe
Confidence 46677889999999999 688999999999999999987542 3456788999999999999999999999 6999999
Q ss_pred EcCCCCCCC------------CeeeecC-CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe----ee-----e
Q psy8285 319 DFRQLDAKR------------PQVNNQC-HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE----KC-----H 376 (507)
Q Consensus 319 d~~~~~~~~------------~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~----~~-----~ 376 (507)
|........ ++..+.+ |...|++++|+|++..+++.+. |+.|++|+...+.. .. .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~ 298 (345)
T 3fm0_A 222 RQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG---DDAIRVFQEDPNSDPQQPTFSLTAHL 298 (345)
T ss_dssp EEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET---TSCEEEEEECTTSCTTSCCEEEEEEE
T ss_pred ccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC---CCeEEEEEeCCCCCcceeeEEEEeee
Confidence 975432111 1223333 8889999999999976665554 99999999876531 11 1
Q ss_pred eecC-CCeEEEEECCCCC-eEEEEeccCCCeEEEEeCCCccEEEEe
Q psy8285 377 VKTD-SQVTSILWSEQYR-ELVTSHGKQDCSLKMWEYPRLHLIEEL 420 (507)
Q Consensus 377 ~~~~-~~i~~~~~s~~~~-~l~~~~g~~d~~i~v~d~~~~~~~~~~ 420 (507)
...| ..|.+++|+|++. +|++ ++.||.|++|++.+.+.+..+
T Consensus 299 ~~~h~~~V~~v~~~p~~~~~laS--~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 299 HQAHSQDVNCVAWNPKEPGLLAS--CSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp TTSSSSCEEEEEECSSSTTEEEE--EETTSCEEEEEECC-------
T ss_pred cccccCcEeEeEEeCCCceEEEE--cCCCCcEEEEEecCCCCcccc
Confidence 1233 6899999999985 7777 889999999999988766544
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=298.39 Aligned_cols=277 Identities=19% Similarity=0.343 Sum_probs=241.0
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
...|.+++|+|++ +++++.|+.|++|+..+++....+. + |...|.+++|+|++++|+++ +.|+.|++||+.+++
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--~-h~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~ 98 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS--G-HKLGISDVAWSSDSNLLVSA-SDDKTLKIWDVSSGK 98 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--C-CSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCC
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc--c-CCCceEEEEEcCCCCEEEEE-CCCCEEEEEECCCCc
Confidence 4468899999987 6677899999999999888765544 4 89999999999999999999 999999999999999
Q ss_pred eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8285 243 LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d 319 (507)
.+..+.+|...|.+++| ++++|++++.|+.|++||+++++ ....+..|...|.+++|+|+++++++++ |+.|++||
T Consensus 99 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd 177 (312)
T 4ery_A 99 CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177 (312)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 99999999999999999 68899999999999999999875 5667788999999999999999999999 69999999
Q ss_pred cCCCCCCCCeeee-cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC-C---eEEEEECCCCCe
Q psy8285 320 FRQLDAKRPQVNN-QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS-Q---VTSILWSEQYRE 394 (507)
Q Consensus 320 ~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~---i~~~~~s~~~~~ 394 (507)
++++ +.+..+ ..+...+..++|+|+++.+++.+. |+.|++||+++++++..+..+. . +......+++.+
T Consensus 178 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (312)
T 4ery_A 178 TASG---QCLKTLIDDDNPPVSFVKFSPNGKYILAATL---DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW 251 (312)
T ss_dssp TTTC---CEEEEECCSSCCCEEEEEECTTSSEEEEEET---TTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCE
T ss_pred CCCC---ceeeEEeccCCCceEEEEECCCCCEEEEEcC---CCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcE
Confidence 9987 555554 346678999999999966665544 9999999999999888887652 2 233334467888
Q ss_pred EEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEe--CCCcEEEEecC
Q psy8285 395 LVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAAS--ADETISIWNCF 454 (507)
Q Consensus 395 l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~--~dg~i~iw~~~ 454 (507)
|++ |+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++ .|+.|++|+..
T Consensus 252 l~s--g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 252 IVS--GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEE--CCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEE--ECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 888 89999999999999999999999999999999999999999987 69999999864
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=333.39 Aligned_cols=387 Identities=11% Similarity=0.132 Sum_probs=286.8
Q ss_pred cccccceeeeeeccCcceeeeccccccccceeeecccCC----cceeeee-cCcc-cceeeccc--cccccccCCccCCc
Q psy8285 3 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG----KEKCHVK-TDSQ-VTSILWSE--QYRESSRSKMVNTD 74 (507)
Q Consensus 3 ~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g----~~~~~~~-~~~~-v~~~~~s~--~~~~~~~~~~~~~~ 74 (507)
..|.+.|++++|||+|++ |++++ |+.|+|||+.++ +++..+. |... |.+++|+| +++.+.+.
T Consensus 15 ~~~~~~v~~~~~spdg~~-l~~~~---~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~------ 84 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNA-IAYPC---GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG------ 84 (615)
T ss_dssp CCCTTCCCCCEEETTTTE-EEEEE---TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEE------
T ss_pred CCccCceeEEEECCCCCE-EEEec---CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEe------
Confidence 579999999999999997 77776 789999999999 8888888 7788 99999999 87755432
Q ss_pred eeEeecCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCch
Q psy8285 75 RYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPE 154 (507)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (507)
..|..+..|++...... .. ... ..+..+
T Consensus 85 -------~~dg~v~vw~~~~~~~~------------~~--~~~-----~~~~~~-------------------------- 112 (615)
T 1pgu_A 85 -------DESGKVIVWGWTFDKES------------NS--VEV-----NVKSEF-------------------------- 112 (615)
T ss_dssp -------ETTSEEEEEEEEEEGGG------------TE--EEE-----EEEEEE--------------------------
T ss_pred -------cCCCEEEEEeCCCCccc------------cc--ccc-----cccchh--------------------------
Confidence 12233344443211000 00 000 000000
Q ss_pred hhhcCCCcccccceeeeeeCCCC--EEEEEcC----CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCC-eEEEEe
Q psy8285 155 RILEAPSIINDFYTSGLDWGYHD--TLAVALD----TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTT-DLAVTN 227 (507)
Q Consensus 155 ~~~~~~~~~~~~~i~~~~~s~~~--~~~~~~~----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 227 (507)
. .....|.+++|+|++ +++++.+ +.|++|| .++.. ..+.+ |...|.+++|+|+++ .++++
T Consensus 113 ---~----~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~--~~~~~-~~~~v~~~~~~~~~~~~l~~~- 179 (615)
T 1pgu_A 113 ---Q----VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSL--GEVSG-HSQRINACHLKQSRPMRSMTV- 179 (615)
T ss_dssp ---E----CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEE--EECCS-CSSCEEEEEECSSSSCEEEEE-
T ss_pred ---h----cccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcc--eeeec-CCccEEEEEECCCCCcEEEEE-
Confidence 0 012347889999998 5555555 6888888 34433 34455 999999999999998 57777
Q ss_pred CCCCcEEEEeCCCceeEEEEeecCc---cEEEEEe--e-CCEEEEEecCCeEEEEECCCCCcCceee-e---cCCCceEE
Q psy8285 228 TCTEYIDLWHEQEERLIQKLRTHMH---QVIAMCW--N-GNLLSCGTIGGNILHYDVRTHSDYPTAI-T---REGDVVCG 297 (507)
Q Consensus 228 ~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~---~~~~~v~~ 297 (507)
+.|+.|++||+.+++.+..+..|.. .|.+++| + +++|++++.|+.|++||+++++ ....+ . .|...|.+
T Consensus 180 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~v~~ 258 (615)
T 1pgu_A 180 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE-FLKYIEDDQEPVQGGIFA 258 (615)
T ss_dssp ETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC-EEEECCBTTBCCCSCEEE
T ss_pred eCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC-EeEEecccccccCCceEE
Confidence 9999999999999999999999999 9999999 5 8899999999999999999876 44445 5 89999999
Q ss_pred EEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCC----CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC
Q psy8285 298 LKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCH----LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 372 (507)
Q Consensus 298 ~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 372 (507)
++|+ ++++|++++ |+.|++||++++ +.+..+..+ ...+.++.|. ++..+++ ++. |+.|++||+.+++
T Consensus 259 ~~~~-~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~-~~~--~g~i~~~d~~~~~ 330 (615)
T 1pgu_A 259 LSWL-DSQKFATVGADATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVAT-GNGRIIS-LSL--DGTLNFYELGHDE 330 (615)
T ss_dssp EEES-SSSEEEEEETTSEEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEE-ETTEEEE-EET--TSCEEEEETTEEE
T ss_pred EEEc-CCCEEEEEcCCCcEEEEECCCC---cEEEEEcCCCCcccCceeEEEeC-CCCeEEE-EEC--CCCEEEEECCCCc
Confidence 9999 999999999 699999999987 666666655 3678888886 5645554 443 9999999998776
Q ss_pred eeeeeecC-CCeEEEE---------------------------------EC-----------------------------
Q psy8285 373 EKCHVKTD-SQVTSIL---------------------------------WS----------------------------- 389 (507)
Q Consensus 373 ~~~~~~~~-~~i~~~~---------------------------------~s----------------------------- 389 (507)
++..+..+ ..+.+++ |+
T Consensus 331 ~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~ 410 (615)
T 1pgu_A 331 VLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPK 410 (615)
T ss_dssp EEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEE
T ss_pred EEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCce
Confidence 66555433 2333333 31
Q ss_pred -----CC--------------------------------------CCeEEEEeccC-CCeEEEEeCCCccEE-EEeeccc
Q psy8285 390 -----EQ--------------------------------------YRELVTSHGKQ-DCSLKMWEYPRLHLI-EELKIHQ 424 (507)
Q Consensus 390 -----~~--------------------------------------~~~l~~~~g~~-d~~i~v~d~~~~~~~-~~~~~~~ 424 (507)
|+ ++++++ ++. |+.|++||+.+++.. ..+.+|.
T Consensus 411 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~d~~i~~~~~~~~~~~~~~~~~~~ 488 (615)
T 1pgu_A 411 VASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAV--GLEEGNTIQVFKLSDLEVSFDLKTPLR 488 (615)
T ss_dssp EEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEE--EETTTSCEEEEETTEEEEEEECSSCCS
T ss_pred EEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEE--eecCCCeEEEEECCCccccccccCCcc
Confidence 11 333444 444 677777777666554 5667799
Q ss_pred cceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccccee--ecCCCcceEEee
Q psy8285 425 ERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR--QVGSGSSLEFAI 475 (507)
Q Consensus 425 ~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~ 475 (507)
..|++++|+|++++|++++.||.|++|++.+++...... +...+..+.|++
T Consensus 489 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp 541 (615)
T 1pgu_A 489 AKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKP 541 (615)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECC
T ss_pred CceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcC
Confidence 999999999999999999999999999999988877655 555667777777
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-40 Score=301.65 Aligned_cols=284 Identities=19% Similarity=0.373 Sum_probs=237.7
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|.||.+.|++++|+|+|++ |++|+ .|+.|+|||..+++....+. |...
T Consensus 19 ~~gh~~~v~~~~~s~~~~~-l~s~~--~dg~i~iw~~~~~~~~~~~~~h~~~---------------------------- 67 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEW-LASSS--ADKLIKIWGAYDGKFEKTISGHKLG---------------------------- 67 (312)
T ss_dssp ECCCSSCEEEEEECTTSSE-EEEEE--TTSCEEEEETTTCCEEEEECCCSSC----------------------------
T ss_pred EcccCCcEEEEEECCCCCE-EEEee--CCCeEEEEeCCCcccchhhccCCCc----------------------------
Confidence 6799999999999999997 88888 89999999999888665443 2222
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 68 -------------------------------------------------------------------------------- 67 (312)
T 4ery_A 68 -------------------------------------------------------------------------------- 67 (312)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
|.+++|+|++ +++++.|+.|++||+.+++....+. + |...|.+++|+|++++|+++ +.|+.|++||+
T Consensus 68 -------v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~s~-~~d~~i~iwd~ 136 (312)
T 4ery_A 68 -------ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK--G-HSNYVFCCNFNPQSNLIVSG-SFDESVRIWDV 136 (312)
T ss_dssp -------EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--C-CSSCEEEEEECSSSSEEEEE-ETTSCEEEEET
T ss_pred -------eEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEc--C-CCCCEEEEEEcCCCCEEEEE-eCCCcEEEEEC
Confidence 3456677765 6677899999999999988765554 3 88999999999999999999 99999999999
Q ss_pred CCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 239 QEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
.+++.+..+..|..+|.+++| ++++|++++.||.|++||+++.+........+...+..++|+|++++|++++ |+.|
T Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 216 (312)
T 4ery_A 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTL 216 (312)
T ss_dssp TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEE
T ss_pred CCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeE
Confidence 999999999999999999999 6889999999999999999987644444456677899999999999999999 6999
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCee--EEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCC
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVK--AIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQY 392 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~ 392 (507)
++||++++ +.+..+.+|..... ...+++.+..++++++. |+.|++||+.+++.+..+..+ ..+.+++|+|++
T Consensus 217 ~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~--dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~ 291 (312)
T 4ery_A 217 KLWDYSKG---KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE--DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTE 291 (312)
T ss_dssp EEEETTTT---EEEEEECSSCCSSSCCCEEEECSSSCEEEECCT--TSCEEEEETTTCCEEEEECCCSSCEEEEEECSSS
T ss_pred EEEECCCC---cEEEEEEecCCceEEEEEEEEeCCCcEEEEECC--CCEEEEEECCCchhhhhhhccCCcEEEEeecCcC
Confidence 99999987 67777777766543 33455444466777665 999999999999999988877 689999999999
Q ss_pred CeEEEEeccCCCeEEEEeCC
Q psy8285 393 RELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 393 ~~l~~~~g~~d~~i~v~d~~ 412 (507)
+++++++.+.|+.|++|+..
T Consensus 292 ~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 292 NIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SEEEEEECTTTCCEEEEECC
T ss_pred CceEEEEccCCccEEEecCC
Confidence 99998533479999999864
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=313.81 Aligned_cols=265 Identities=16% Similarity=0.280 Sum_probs=231.4
Q ss_pred eeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeec
Q psy8285 171 LDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTH 250 (507)
Q Consensus 171 ~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~ 250 (507)
++|+++.+++++.|+.|++||+.+++....+. + |...|.++.|+ ++.++++ +.||.|++||+.+++.+..+.+|
T Consensus 165 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--~-h~~~v~~~~~~--~~~l~s~-s~dg~i~~wd~~~~~~~~~~~~~ 238 (445)
T 2ovr_B 165 SQMRDNIIISGSTDRTLKVWNAETGECIHTLY--G-HTSTVRCMHLH--EKRVVSG-SRDATLRVWDIETGQCLHVLMGH 238 (445)
T ss_dssp EEEETTEEEEEETTSCEEEEETTTTEEEEEEC--C-CSSCEEEEEEE--TTEEEEE-ETTSEEEEEESSSCCEEEEEECC
T ss_pred EEecCCEEEEEeCCCeEEEEECCcCcEEEEEC--C-CCCcEEEEEec--CCEEEEE-eCCCEEEEEECCCCcEEEEEcCC
Confidence 44444447888899999999999987665544 4 89999999996 5678888 99999999999999999999999
Q ss_pred CccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCe
Q psy8285 251 MHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQ 329 (507)
Q Consensus 251 ~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~ 329 (507)
...+.+++|+++.+++++.||.|++||+++.+ ....+..|...|.+++| +++++++++ |+.|++||++++ +.+
T Consensus 239 ~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---~~~ 312 (445)
T 2ovr_B 239 VAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCI 312 (445)
T ss_dssp SSCEEEEEECSSCEEEEETTSCEEEEEGGGTE-EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEE
T ss_pred cccEEEEEECCCEEEEEcCCCEEEEEECCCCc-EeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---CEE
Confidence 99999999999999999999999999998875 56677889999999999 788999998 699999999988 788
Q ss_pred eeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec----CCCeEEEEECCCCCeEEEEeccCCCe
Q psy8285 330 VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT----DSQVTSILWSEQYRELVTSHGKQDCS 405 (507)
Q Consensus 330 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~~~g~~d~~ 405 (507)
..+.+|...+.++.+++ . ++++++. |+.|++||+++++++..+.. ...+.+++|+ ++++++ |+.||.
T Consensus 313 ~~~~~~~~~v~~~~~~~--~-~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s--~~~dg~ 383 (445)
T 2ovr_B 313 HTLTGHQSLTSGMELKD--N-ILVSGNA--DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVIT--SSDDGT 383 (445)
T ss_dssp EEECCCCSCEEEEEEET--T-EEEEEET--TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEE--EETTSE
T ss_pred EEEcCCcccEEEEEEeC--C-EEEEEeC--CCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEE--EeCCCe
Confidence 88889999999988853 3 5555554 99999999999999988874 3679999996 578888 789999
Q ss_pred EEEEeCCCccEEEEe-----eccccceeEEEECCCCCEEEEEeCCCc----EEEEecCCC
Q psy8285 406 LKMWEYPRLHLIEEL-----KIHQERILSAVLSPDQTCVAAASADET----ISIWNCFPR 456 (507)
Q Consensus 406 i~v~d~~~~~~~~~~-----~~~~~~i~~~~~s~~~~~l~s~~~dg~----i~iw~~~~~ 456 (507)
|++||+.+++.+..+ ..|.+.|++++|+|++.++++++.||+ |.+||+...
T Consensus 384 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 384 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 999999999998888 468889999999999999999999998 999999764
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=319.17 Aligned_cols=271 Identities=11% Similarity=0.143 Sum_probs=220.7
Q ss_pred eeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee
Q psy8285 172 DWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT 249 (507)
Q Consensus 172 ~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~ 249 (507)
.|++++ +++++.|+.|++||+.+++.... +.+ |...|.+++|+|++++|+++ +.|+.|++||+.+++.+..+.+
T Consensus 104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~-h~~~v~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~ 179 (420)
T 3vl1_A 104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREI--DQA-HVSEITKLKFFPSGEALISS-SQDMQLKIWSVKDGSNPRTLIG 179 (420)
T ss_dssp EECSSSCEEEEEETTSCEEEECTTSCEEEEE--TTS-SSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCCCEEEEC
T ss_pred EEecCCCEEEEEECCCCEEEEeCCCcceeee--ccc-ccCccEEEEECCCCCEEEEE-eCCCeEEEEeCCCCcCceEEcC
Confidence 455555 66677999999999988776543 344 99999999999999999999 9999999999999999999999
Q ss_pred cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeec---CCCceE---------------------EEEEcCC
Q psy8285 250 HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITR---EGDVVC---------------------GLKWSPN 303 (507)
Q Consensus 250 ~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~v~---------------------~~~~~~~ 303 (507)
|...|.+++| ++++|++++.|+.|++||+++++ ....+.. +...+. +++|+|+
T Consensus 180 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 258 (420)
T 3vl1_A 180 HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT-TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY 258 (420)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE-EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc-eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCC
Confidence 9999999999 68899999999999999999875 3334432 333444 4555789
Q ss_pred CCEEEEEe-CCcEEEEEcCCCCCCCCeeee-cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe-eeeeec-
Q psy8285 304 GRYLASGS-NNTVKIWDFRQLDAKRPQVNN-QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE-KCHVKT- 379 (507)
Q Consensus 304 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~- 379 (507)
+++|++++ |+.|++||++++ +....+ ..|...|.+++|+|++..++++++. |+.|++||+++++. +..+..
T Consensus 259 ~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~ 333 (420)
T 3vl1_A 259 GKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYE--NGMLAQWDLRSPECPVGEFLIN 333 (420)
T ss_dssp TEEEEEEETTSCEEEEETTTC---CEEEEECCTTSSCEEEEEECSSCTTEEEEEET--TSEEEEEETTCTTSCSEEEEES
T ss_pred CCEEEEEcCCCeEEEEECCCC---ceeEEcccccCCCceeEEEeCCCCCEEEEEeC--CCeEEEEEcCCCcCchhhhhcc
Confidence 99999999 699999999987 555444 4578899999999999757777665 99999999998754 666664
Q ss_pred C-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc---------cEEEEeeccccceeEEEECCCCC---EEEEEeCCC
Q psy8285 380 D-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL---------HLIEELKIHQERILSAVLSPDQT---CVAAASADE 446 (507)
Q Consensus 380 ~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~---------~~~~~~~~~~~~i~~~~~s~~~~---~l~s~~~dg 446 (507)
+ ..+.++.+ +++++|++ ++.|+.|++|++... .....+..|...|.+++|+|+++ .+++++.+|
T Consensus 334 ~~~~v~~~~~-~~~~~l~s--~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g 410 (420)
T 3vl1_A 334 EGTPINNVYF-AAGALFVS--SGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN 410 (420)
T ss_dssp TTSCEEEEEE-ETTEEEEE--ETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTT
T ss_pred CCCCceEEEe-CCCCEEEE--ecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCc
Confidence 3 56777755 57888888 889999999998763 22234557888999999999999 788888899
Q ss_pred cEEEEecCC
Q psy8285 447 TISIWNCFP 455 (507)
Q Consensus 447 ~i~iw~~~~ 455 (507)
.+.+|++.+
T Consensus 411 ~~~~~~~~~ 419 (420)
T 3vl1_A 411 FCALYNLSN 419 (420)
T ss_dssp EEEEEESCC
T ss_pred eEEEEeccC
Confidence 999999875
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=300.84 Aligned_cols=277 Identities=14% Similarity=0.220 Sum_probs=229.8
Q ss_pred cceeeeee-----CC-CC--EEEEEcCCeEEEEECCCCc-----eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCc
Q psy8285 166 FYTSGLDW-----GY-HD--TLAVALDTSVYTWNTKTNK-----TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEY 232 (507)
Q Consensus 166 ~~i~~~~~-----s~-~~--~~~~~~~~~i~iw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~ 232 (507)
..|.+++| ++ ++ +++++.|+.|++||+.+.+ ......+.+ |...|.+++|+|++.+++++ +.|++
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~~l~s~-s~D~~ 99 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG-HNHFVSDLALSQENCFAISS-SWDKT 99 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC-CSSCEEEEEECSSTTEEEEE-ETTSE
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhcc-CCCceEEEEECCCCCEEEEE-cCCCc
Confidence 45888988 65 55 7778899999999997643 223445666 99999999999999999999 99999
Q ss_pred EEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceee---ecCCCceEEEEEcCCC---
Q psy8285 233 IDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAI---TREGDVVCGLKWSPNG--- 304 (507)
Q Consensus 233 i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~--- 304 (507)
|++||+.+++.+..+.+|...|.+++| ++++|++++.|+.|++||+.... .... ..|...|.+++|+|++
T Consensus 100 v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~ 177 (343)
T 2xzm_R 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC--KFSSAEKENHSDWVSCVRYSPIMKSA 177 (343)
T ss_dssp EEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE--EEECCTTTSCSSCEEEEEECCCCCSC
T ss_pred EEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc--eeeeecccCCCceeeeeeeccccccc
Confidence 999999999999999999999999999 68899999999999999997432 2222 3688899999999987
Q ss_pred -------CEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC-CCCeee
Q psy8285 305 -------RYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM-NGKEKC 375 (507)
Q Consensus 305 -------~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~ 375 (507)
.++++++ |+.|++||.+. .....+.+|...|.+++|+|+++.+ ++++. |+.|++||+. ...+..
T Consensus 178 ~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~h~~~v~~~~~s~~g~~l-~sgs~--dg~v~iwd~~~~~~~~~ 250 (343)
T 2xzm_R 178 NKVQPFAPYFASVGWDGRLKVWNTNF----QIRYTFKAHESNVNHLSISPNGKYI-ATGGK--DKKLLIWDILNLTYPQR 250 (343)
T ss_dssp SCCCSSCCEEEEEETTSEEEEEETTT----EEEEEEECCSSCEEEEEECTTSSEE-EEEET--TCEEEEEESSCCSSCSE
T ss_pred cccCCCCCEEEEEcCCCEEEEEcCCC----ceeEEEcCccccceEEEECCCCCEE-EEEcC--CCeEEEEECCCCcccce
Confidence 6899998 69999999543 5667788899999999999999654 55544 9999999994 445555
Q ss_pred eeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEE--Eee-----------ccccceeEEEECCCCCEEEEE
Q psy8285 376 HVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIE--ELK-----------IHQERILSAVLSPDQTCVAAA 442 (507)
Q Consensus 376 ~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~--~~~-----------~~~~~i~~~~~s~~~~~l~s~ 442 (507)
.+.....+.+++|+|+++++++ + .|+.|++||+.+++... .+. +|...|.+++|+|+|++|++|
T Consensus 251 ~~~~~~~v~~v~~sp~~~~la~--~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg 327 (343)
T 2xzm_R 251 EFDAGSTINQIAFNPKLQWVAV--G-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAG 327 (343)
T ss_dssp EEECSSCEEEEEECSSSCEEEE--E-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEE
T ss_pred eecCCCcEEEEEECCCCCEEEE--E-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEe
Confidence 5656678999999999988876 4 47889999998765433 333 677889999999999999999
Q ss_pred eCCCcEEEEecCCC
Q psy8285 443 SADETISIWNCFPR 456 (507)
Q Consensus 443 ~~dg~i~iw~~~~~ 456 (507)
+.||.|++|++.++
T Consensus 328 ~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 328 FTDGVIRTFSFETS 341 (343)
T ss_dssp ETTSEEEEEEEEEE
T ss_pred cCCceEEEEEEEcc
Confidence 99999999998754
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=297.86 Aligned_cols=282 Identities=20% Similarity=0.279 Sum_probs=220.9
Q ss_pred cceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEec--CCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC---
Q psy8285 166 FYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEY--PTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE--- 240 (507)
Q Consensus 166 ~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~--- 240 (507)
..|.+++|+|+.+++++.|+.|++|++..+.......+ .+ |...|.+++|+|++++|+++ +.|+.|++||+..
T Consensus 15 ~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~-h~~~v~~v~~sp~~~~las~-s~D~~v~iw~~~~~~~ 92 (330)
T 2hes_X 15 EKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETA-HKKAIRSVAWRPHTSLLAAG-SFDSTVSIWAKEESAD 92 (330)
T ss_dssp SCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTC-CCSCEEEEEECTTSSEEEEE-ETTSCEEEEEC-----
T ss_pred CceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCC-ccCCEEEEEECCCCCEEEEE-eCCCcEEEEEcccCcC
Confidence 35788999999677778999999999987643333323 33 88999999999999999999 9999999999853
Q ss_pred ----ceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCC---cCceeeecCCCceEEEEEcCCCCEEEEEe
Q psy8285 241 ----ERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHS---DYPTAITREGDVVCGLKWSPNGRYLASGS 311 (507)
Q Consensus 241 ----~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 311 (507)
.+.+..+.+|...|.+++| ++++|++++.|+.|++||++... .....+.+|...|.+++|+|++++|++++
T Consensus 93 ~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s 172 (330)
T 2hes_X 93 RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSS 172 (330)
T ss_dssp --CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEc
Confidence 3567788899999999999 68999999999999999995432 23456778999999999999999999999
Q ss_pred -CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCC-cEEEEEccCCCCeEEEEeCCCC--------Ceeeeee--c
Q psy8285 312 -NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEP-TLLATGGGICDQTVRLWNSMNG--------KEKCHVK--T 379 (507)
Q Consensus 312 -d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~--------~~~~~~~--~ 379 (507)
|++|++||...+. .+++..+.+|...|.+++|+|++. .++++++. |++|++||++.+ .+...+. +
T Consensus 173 ~D~~i~iW~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~--D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h 249 (330)
T 2hes_X 173 YDDTVRIWKDYDDD-WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD--DSTVRVWKYMGDDEDDQQEWVCEAILPDVH 249 (330)
T ss_dssp TTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCSSSSCEEEEEET--TSCEEEEEEEEECTTSCEEEEEEEECCSCC
T ss_pred CCCeEEEEECCCCC-eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC--CCeEEEEEecCCCccccceeEEeeeccccc
Confidence 6999999987531 135677889999999999999832 45666654 999999998754 2333443 3
Q ss_pred CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc--EEEE-eecccc-ceeEEEECC--CCCEEEEEeCCCcEEEEec
Q psy8285 380 DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH--LIEE-LKIHQE-RILSAVLSP--DQTCVAAASADETISIWNC 453 (507)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~--~~~~-~~~~~~-~i~~~~~s~--~~~~l~s~~~dg~i~iw~~ 453 (507)
...|.+++|++++ +|++ ++.||.|++||..+++ .+.. +.+|.. .|.+++|+| ++++|++++.||.|++|++
T Consensus 250 ~~~v~~v~~s~~~-~l~s--~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 250 KRQVYNVAWGFNG-LIAS--VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp SSCEEEEEECTTS-CEEE--EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred ccceEEEEEcCCC-EEEE--EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 3689999999765 7777 7789999999998763 3333 356876 899999999 7899999999999999998
Q ss_pred CC
Q psy8285 454 FP 455 (507)
Q Consensus 454 ~~ 455 (507)
.+
T Consensus 327 ~~ 328 (330)
T 2hes_X 327 EK 328 (330)
T ss_dssp --
T ss_pred cc
Confidence 65
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-39 Score=305.03 Aligned_cols=238 Identities=19% Similarity=0.384 Sum_probs=198.3
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
..+|.+++|+|++ +++++.|+.|++||+.+++....+ .+ |...|.+++|+|++++|+++ +.|+.|++||+.+++
T Consensus 123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~--~~-h~~~v~~~~~~p~~~~l~s~-s~d~~v~iwd~~~~~ 198 (393)
T 1erj_A 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL--QG-HEQDIYSLDYFPSGDKLVSG-SGDRTVRIWDLRTGQ 198 (393)
T ss_dssp CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--CC-CSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTE
T ss_pred ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE--cc-CCCCEEEEEEcCCCCEEEEe-cCCCcEEEEECCCCe
Confidence 3457889999987 666789999999999988765544 45 99999999999999999999 999999999999998
Q ss_pred eEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceee-------ecCCCceEEEEEcCCCCEEEEEe-
Q psy8285 243 LIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAI-------TREGDVVCGLKWSPNGRYLASGS- 311 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~- 311 (507)
....+. +...+.+++| ++++|++++.|+.|++||++++. ....+ .+|...|.+++|+|++++|++++
T Consensus 199 ~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 276 (393)
T 1erj_A 199 CSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 276 (393)
T ss_dssp EEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC------CCCSSCEEEEEECTTSSEEEEEET
T ss_pred eEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc-EEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC
Confidence 877775 5677888888 57899999999999999998865 22222 57889999999999999999999
Q ss_pred CCcEEEEEcCCCCC---------CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-C
Q psy8285 312 NNTVKIWDFRQLDA---------KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-S 381 (507)
Q Consensus 312 d~~i~i~d~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~ 381 (507)
|+.|++||++.... ..+...+.+|...|.+++|+|++..++ +++. |+.|++||+.+++++..+..| .
T Consensus 277 d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-sgs~--D~~v~iwd~~~~~~~~~l~~h~~ 353 (393)
T 1erj_A 277 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL-SGSK--DRGVLFWDKKSGNPLLMLQGHRN 353 (393)
T ss_dssp TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEE-EEET--TSEEEEEETTTCCEEEEEECCSS
T ss_pred CCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEE-EEeC--CCeEEEEECCCCeEEEEECCCCC
Confidence 69999999986421 133456778999999999999986554 5544 999999999999999988877 6
Q ss_pred CeEEEEECC------CCCeEEEEeccCCCeEEEEeCCC
Q psy8285 382 QVTSILWSE------QYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 382 ~i~~~~~s~------~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
.|.+++|++ ++++|++ |+.||.|++|++..
T Consensus 354 ~v~~v~~~~~~~~~p~~~~l~s--gs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 354 SVISVAVANGSSLGPEYNVFAT--GSGDCKARIWKYKK 389 (393)
T ss_dssp CEEEEEECSSCTTCTTCEEEEE--EETTSEEEEEEEEE
T ss_pred CEEEEEecCCcCcCCCCCEEEE--ECCCCcEEECcccc
Confidence 899999886 6788888 88999999999754
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=300.59 Aligned_cols=232 Identities=21% Similarity=0.346 Sum_probs=188.2
Q ss_pred ceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 167 YTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.|.+++|+|++ +++++.|+.|++||+.+++....+. + |...|.+++|+|++++|+++ +.|+.|++||+... ..
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~--~-h~~~v~~v~~sp~~~~l~s~-~~d~~i~~wd~~~~-~~ 152 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV--G-HQSEVYSVAFSPDNRQILSA-GAEREIKLWNILGE-CK 152 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEE--C-CCSCEEEEEECSSTTEEEEE-ETTSCEEEEESSSC-EE
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEc--C-CCCcEEEEEECCCCCEEEEE-cCCCEEEEEeccCC-ce
Confidence 36678888877 6677899999999999988665544 4 99999999999999999999 89999999999843 33
Q ss_pred EEEe---ecCccEEEEEee--C----------CEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEE
Q psy8285 245 QKLR---THMHQVIAMCWN--G----------NLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 245 ~~~~---~~~~~v~~~~~~--~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 309 (507)
.... .|...|.+++|+ + .+|++++.|+.|++||... .....+..|...|.+++|+|++++|++
T Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~s 230 (343)
T 2xzm_R 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESNVNHLSISPNGKYIAT 230 (343)
T ss_dssp EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCccccceEEEECCCCCEEEE
Confidence 3333 688899999993 2 6899999999999999543 345677889999999999999999999
Q ss_pred Ee-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee--eee--------
Q psy8285 310 GS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC--HVK-------- 378 (507)
Q Consensus 310 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~-------- 378 (507)
++ |+.|++||++... .....+ .+...|.+++|+|++ .+++++. |+.|++||+.+++... .+.
T Consensus 231 gs~dg~v~iwd~~~~~--~~~~~~-~~~~~v~~v~~sp~~-~~la~~~---d~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 303 (343)
T 2xzm_R 231 GGKDKKLLIWDILNLT--YPQREF-DAGSTINQIAFNPKL-QWVAVGT---DQGVKIFNLMTQSKAPVCTIEAEPITKAE 303 (343)
T ss_dssp EETTCEEEEEESSCCS--SCSEEE-ECSSCEEEEEECSSS-CEEEEEE---SSCEEEEESSSCCSCSEEECCCCSGGGBT
T ss_pred EcCCCeEEEEECCCCc--ccceee-cCCCcEEEEEECCCC-CEEEEEC---CCCEEEEEeCCCCCCceEEeecCcchhhh
Confidence 99 6999999995441 233333 355679999999998 5666665 8899999998876543 332
Q ss_pred ---cC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc
Q psy8285 379 ---TD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 379 ---~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~ 414 (507)
.+ ..+.+++|+|+|++|++ |+.||.|++|++.++
T Consensus 304 ~~~~~~~~v~~~~~sp~g~~l~s--g~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 304 GQKGKNPQCTSLAWNALGKKLFA--GFTDGVIRTFSFETS 341 (343)
T ss_dssp TBCCSCCCEEEEEECSSSCCEEE--EETTSEEEEEEEEEE
T ss_pred hhcCCCCceEEEEECCCCCeEEE--ecCCceEEEEEEEcc
Confidence 22 57999999999999999 889999999998654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=332.60 Aligned_cols=342 Identities=19% Similarity=0.247 Sum_probs=273.8
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|++|.+.|++++|||+|++ ||+|+ .|+.|+|||+.+++++.++. +...|.++.
T Consensus 9 ~~~h~~~v~~i~~sp~~~~-la~~~--~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~----------------------- 62 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPW-VLTTL--YSGRVEIWNYETQVEVRSIQVTETPVRAGK----------------------- 62 (814)
T ss_dssp EEEECSCEEEEEECSSSSE-EEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEE-----------------------
T ss_pred eecCCCceEEEEECCCCCE-EEEEe--CCCEEEEEECCCCceEEEEecCCCcEEEEE-----------------------
Confidence 6799999999999999997 78887 79999999999998877665 444444444
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 63 -------------------------------------------------------------------------------- 62 (814)
T 3mkq_A 63 -------------------------------------------------------------------------------- 62 (814)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
|+|++ +++++.|+.|++||+.+++...... + |...|++++|+|++++|+++ +.||.|++||+
T Consensus 63 ------------~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~--~-~~~~v~~~~~s~~~~~l~~~-~~dg~i~vw~~ 126 (814)
T 3mkq_A 63 ------------FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE--A-HPDYIRSIAVHPTKPYVLSG-SDDLTVKLWNW 126 (814)
T ss_dssp ------------EEGGGTEEEEEETTSEEEEEETTTCCEEEEEE--C-CSSCEEEEEECSSSSEEEEE-ETTSEEEEEEG
T ss_pred ------------EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe--c-CCCCEEEEEEeCCCCEEEEE-cCCCEEEEEEC
Confidence 44444 6667799999999999988766554 3 88999999999999999999 99999999999
Q ss_pred CCc-eeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC--CCCEEEEEe-
Q psy8285 239 QEE-RLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP--NGRYLASGS- 311 (507)
Q Consensus 239 ~~~-~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~- 311 (507)
.++ .....+.+|...|.+++| +++.|++++.||.|++||+.+..........+...+.+++|+| +++++++++
T Consensus 127 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~ 206 (814)
T 3mkq_A 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206 (814)
T ss_dssp GGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred CCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence 987 777888899999999999 4679999999999999999887644444444558899999999 999999999
Q ss_pred CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECC
Q psy8285 312 NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSE 390 (507)
Q Consensus 312 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~ 390 (507)
|+.|++||++++ +.+..+.+|...|.+++|+|+++.+++ ++. |+.|++||+.+++.+..+..+ ..+.+++|+|
T Consensus 207 dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~--dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~ 280 (814)
T 3mkq_A 207 DLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHPTLPIIIS-GSE--DGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (814)
T ss_dssp TSEEEEEETTTT---EEEEEEECCSSCEEEEEECSSSSEEEE-EET--TSCEEEEETTTCSEEEEECCSSSSEEEEEECT
T ss_pred CCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEE-EeC--CCeEEEEECCCCcEEEEeecCCCcEEEEEEcc
Confidence 599999999987 778888889999999999999965554 443 999999999999998888776 7899999999
Q ss_pred CCCeE-EEEeccCCCeEEEEeCCCccEEEE-------------------------------------------eeccccc
Q psy8285 391 QYREL-VTSHGKQDCSLKMWEYPRLHLIEE-------------------------------------------LKIHQER 426 (507)
Q Consensus 391 ~~~~l-~~~~g~~d~~i~v~d~~~~~~~~~-------------------------------------------~~~~~~~ 426 (507)
+++.+ ++ .+.++.+.+|++........ +..+...
T Consensus 281 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (814)
T 3mkq_A 281 TGRKNYIA--SGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVF 358 (814)
T ss_dssp TCGGGEEE--EEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSC
T ss_pred CCCceEEE--EEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccC
Confidence 99853 33 23477788888754322111 1223446
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecCCCcceEEeeccC
Q psy8285 427 ILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAILKQ 478 (507)
Q Consensus 427 i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (507)
+.+++|+|+|+++++++ |+.+.+|++...... ..+.+..+.|+++..
T Consensus 359 ~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~----~~~~i~~~~~spdg~ 405 (814)
T 3mkq_A 359 PQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNK----AFGKCQDFVWGPDSN 405 (814)
T ss_dssp CSEEEECTTSSEEEEEE-TTEEEEEETTTTEEE----EEEECSEEEECTTSS
T ss_pred CceeEECCCCCEEEEec-CCEEEEEECcccccc----CCCceEEEEEeCCCC
Confidence 78999999999999988 899999997543221 223344555555443
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=310.25 Aligned_cols=267 Identities=17% Similarity=0.271 Sum_probs=225.5
Q ss_pred eeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEc--cCCCeEEEEeCCCCcEEEEeCCCcee--
Q psy8285 169 SGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWK--PRTTDLAVTNTCTEYIDLWHEQEERL-- 243 (507)
Q Consensus 169 ~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~~dg~i~iwd~~~~~~-- 243 (507)
.+++|++++ +++++.|+.|++||+.+++....+ .+ |...|.+++|+ +++.+++++ +.||.|++||+.++..
T Consensus 166 ~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~--~~-h~~~v~~l~~~~~~~~~~l~s~-s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 166 WALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVF--EG-HNSTVRCLDIVEYKNIKYIVTG-SRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp EEEEECSTTEEEEEETTSCEEEEETTTTEEEEEE--CC-CSSCEEEEEEEESSSCEEEEEE-ETTSCEEEEECCCCCCC-
T ss_pred EEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEE--CC-CCCccEEEEEecCCCCCEEEEE-cCCCcEEEeeCCCCcccc
Confidence 345555655 677889999999999998865554 44 89999999998 467888888 9999999999987652
Q ss_pred ---------------------EEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC
Q psy8285 244 ---------------------IQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP 302 (507)
Q Consensus 244 ---------------------~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 302 (507)
+..+.+|...+.++..+++++++++.|+.|++||+++.+ ....+.+|...|.+++|+|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~ 320 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRIYSTIYDH 320 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEEET
T ss_pred cccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEecCCCCCEEEEEEcC
Confidence 556778999999999999999999999999999999875 5667788999999999999
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC
Q psy8285 303 NGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS 381 (507)
Q Consensus 303 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 381 (507)
+++++++++ |+.|++||++++ +.+..+.+|...|.++.|++ ..+++++. |+.|++||+.+++.........
T Consensus 321 ~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~~---~~l~s~s~--dg~v~vwd~~~~~~~~~~~~~~ 392 (464)
T 3v7d_B 321 ERKRCISASMDTTIRIWDLENG---ELMYTLQGHTALVGLLRLSD---KFLVSAAA--DGSIRGWDANDYSRKFSYHHTN 392 (464)
T ss_dssp TTTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEECS---SEEEEEET--TSEEEEEETTTCCEEEEEECTT
T ss_pred CCCEEEEEeCCCcEEEEECCCC---cEEEEEeCCCCcEEEEEEcC---CEEEEEeC--CCcEEEEECCCCceeeeecCCC
Confidence 999999999 699999999988 78889999999999999984 35555554 9999999999998887777777
Q ss_pred CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEE-eeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEE-LKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
.+..++|+|+++++++ |+ ||.|++||+.+++.+.. +..|...|.+++|+ +..++++++.||.+.+|-
T Consensus 393 ~~~~~~~~~~~~~l~~--~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 393 LSAITTFYVSDNILVS--GS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp CCCEEEEEECSSEEEE--EE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CccEEEEEeCCCEEEE--ec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 8888999999999998 66 89999999999999886 66789999999997 344555666777655543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-38 Score=295.10 Aligned_cols=285 Identities=13% Similarity=0.149 Sum_probs=249.3
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
...|.+++|+|++ +++++.|+.|++||+.+++....+. + |...|.+++|+|++++|+++ +.||.|++||+.+++
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~-h~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~ 107 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD--G-HTGTIWSIDVDCFTKYCVTG-SADYSIKLWDVSNGQ 107 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC--C-CSSCEEEEEECTTSSEEEEE-ETTTEEEEEETTTCC
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh--h-cCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCc
Confidence 4458899999987 6666789999999999888765544 4 89999999999999999999 899999999999999
Q ss_pred eEEEEeecCccEEEEEe--eCCEEEEEecC-----CeEEEEECCCCCc----------CceeeecCCC--ceEEEEEcCC
Q psy8285 243 LIQKLRTHMHQVIAMCW--NGNLLSCGTIG-----GNILHYDVRTHSD----------YPTAITREGD--VVCGLKWSPN 303 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~d-----g~i~i~d~~~~~~----------~~~~~~~~~~--~v~~~~~~~~ 303 (507)
.+..+. +...+.+++| +++++++++.+ +.|.+||+..... ....+..|.. .+.+++|+|+
T Consensus 108 ~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (369)
T 3zwl_B 108 CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTK 186 (369)
T ss_dssp EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGG
T ss_pred EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCC
Confidence 988887 8899999999 78999999998 9999999987642 2334445555 8999999999
Q ss_pred CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCC
Q psy8285 304 GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQ 382 (507)
Q Consensus 304 ~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 382 (507)
+++|++++ |+.|++||+++. ...+..+..|...|.+++|+|++..+++.+. |+.|++||+++++.+..+.....
T Consensus 187 ~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~ 261 (369)
T 3zwl_B 187 GKYIIAGHKDGKISKYDVSNN--YEYVDSIDLHEKSISDMQFSPDLTYFITSSR---DTNSFLVDVSTLQVLKKYETDCP 261 (369)
T ss_dssp GCEEEEEETTSEEEEEETTTT--TEEEEEEECCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTCCEEEEEECSSC
T ss_pred CCEEEEEcCCCEEEEEECCCC--cEeEEEEecCCCceeEEEECCCCCEEEEecC---CceEEEEECCCCceeeeecCCCC
Confidence 99999998 699999999872 1677788889999999999999866655444 99999999999999999998889
Q ss_pred eEEEEECCCCCeEEEEeccCCC--------------eEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcE
Q psy8285 383 VTSILWSEQYRELVTSHGKQDC--------------SLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETI 448 (507)
Q Consensus 383 i~~~~~s~~~~~l~~~~g~~d~--------------~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i 448 (507)
+..++|+|+++++++ ++.++ .+++||..+++++..+.+|...|++++|+|++++|++++.||.|
T Consensus 262 ~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v 339 (369)
T 3zwl_B 262 LNTAVITPLKEFIIL--GGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFI 339 (369)
T ss_dssp EEEEEECSSSSEEEE--EECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred ceeEEecCCCceEEE--eecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeE
Confidence 999999999999999 55666 89999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCcccc
Q psy8285 449 SIWNCFPRDKKRK 461 (507)
Q Consensus 449 ~iw~~~~~~~~~~ 461 (507)
++|++.++.....
T Consensus 340 ~iw~~~~~~~~~~ 352 (369)
T 3zwl_B 340 RLHHFEKSYFDFK 352 (369)
T ss_dssp EEEEECHHHHTCC
T ss_pred EEEECccccchhH
Confidence 9999987654443
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-40 Score=320.11 Aligned_cols=263 Identities=9% Similarity=0.077 Sum_probs=196.7
Q ss_pred EEEEEcCCeEEEEECCCCcee---------EEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce-eEEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQ---------LLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER-LIQKL 247 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~-~~~~~ 247 (507)
+++++.|+.|++||+.+++.. ....+.+ |...|++++|++++ .|+++ +.||+|++||+.+++ +...+
T Consensus 228 LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~-h~~~v~sv~~s~~~-~lasg-s~DgtV~lWD~~~~~~~~~~~ 304 (524)
T 2j04_B 228 LSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL-ADSLITTFDFLSPT-TVVCG-FKNGFVAEFDLTDPEVPSFYD 304 (524)
T ss_dssp EEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC-TTTCEEEEEESSSS-EEEEE-ETTSEEEEEETTBCSSCSEEE
T ss_pred EEEEecCCeEEEEEcCCCccccccceeecCceEEEEc-CCCCEEEEEecCCC-eEEEE-eCCCEEEEEECCCCCCceEEe
Confidence 555789999999999876421 1234556 88999999999864 78888 999999999999763 45668
Q ss_pred eecCccEEEE--Ee--eC-CEEEEEecCCeEEEEECCCCCcCceeeecCCC--ceEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8285 248 RTHMHQVIAM--CW--NG-NLLSCGTIGGNILHYDVRTHSDYPTAITREGD--VVCGLKWSPNGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 248 ~~~~~~v~~~--~~--~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~-d~~i~i~d 319 (507)
.+|...|.++ .| ++ .+|++++.|++|++||+++.+ ....+.+|.. .|.+++|+|+++.+++++ |++|++||
T Consensus 305 ~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~-~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd 383 (524)
T 2j04_B 305 QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA-TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVP 383 (524)
T ss_dssp ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH-HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEE
T ss_pred ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC-cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEE
Confidence 8999999999 45 45 799999999999999998765 3334444442 478999999999999988 59999999
Q ss_pred cCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec----C--CCeEEEEECCCCC
Q psy8285 320 FRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT----D--SQVTSILWSEQYR 393 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~--~~i~~~~~s~~~~ 393 (507)
++.+ ..+..+.+|.+.|++++|+|+++.++ +++. |++|++||+..+ .+..... . ..+.+++|+|+++
T Consensus 384 ~~~~---~~~~~l~gH~~~V~sva~Sp~g~~l~-Sgs~--Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~ 456 (524)
T 2j04_B 384 SRAA---FAVHPLVSRETTITAIGVSRLHPMVL-AGSA--DGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDD 456 (524)
T ss_dssp TTCT---TCCEEEEECSSCEEEEECCSSCCBCE-EEET--TTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSC
T ss_pred Cccc---ccceeeecCCCceEEEEeCCCCCeEE-EEEC--CCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCC
Confidence 9987 66677888999999999999997555 4444 999999998654 3322211 1 2467999999998
Q ss_pred eEEEEeccCCCeEEEEeCC-CccEEEEeeccccceeEEEECCCCC---EEEEEeCCCcEEEEecCCC
Q psy8285 394 ELVTSHGKQDCSLKMWEYP-RLHLIEELKIHQERILSAVLSPDQT---CVAAASADETISIWNCFPR 456 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~-~~~~~~~~~~~~~~i~~~~~s~~~~---~l~s~~~dg~i~iw~~~~~ 456 (507)
.+.. .. ...+|+.. ++..+..+.+|...|.+++|+|+++ ++++|+.||.|+||++.-.
T Consensus 457 ~~~~---~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 457 KYRI---DS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp EEEE---CC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred eEEc---cC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 5543 22 23344433 4677888999999999999999954 9999999999999998643
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=309.71 Aligned_cols=286 Identities=16% Similarity=0.315 Sum_probs=242.9
Q ss_pred ceeeeeeCCCC--EEEE-----------EcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcE
Q psy8285 167 YTSGLDWGYHD--TLAV-----------ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYI 233 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~-----------~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i 233 (507)
.+.+++|+|++ +++. +.|+.|++|++.+++..+...... |...|.+++|+|++++|+++ +.||.|
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~-~~dg~v 91 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ-VDSKFNDLDWSHNNKIIAGA-LDNGSL 91 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCC-CSSCEEEEEECSSSSCEEEE-ESSSCE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEe-cCCceEEEEECCCCCeEEEE-ccCCeE
Confidence 46789999986 4554 478899999998876432222223 78899999999999999999 899999
Q ss_pred EEEeCCC----ceeEEEEeecCccEEEEEe--e-CCEEEEEecCCeEEEEECCCCC------cCc--eeeecCCCceEEE
Q psy8285 234 DLWHEQE----ERLIQKLRTHMHQVIAMCW--N-GNLLSCGTIGGNILHYDVRTHS------DYP--TAITREGDVVCGL 298 (507)
Q Consensus 234 ~iwd~~~----~~~~~~~~~~~~~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~------~~~--~~~~~~~~~v~~~ 298 (507)
++||+.+ .+.+..+..|...|.+++| + +++|++++.|+.|++||+++.+ ... .....|...|.++
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence 9999987 4578888899999999999 4 7899999999999999999865 221 2245788899999
Q ss_pred EEcCC-CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCC------CCCeeEEEEccCCCcEEEEEccCCCC---eEEEEe
Q psy8285 299 KWSPN-GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCH------LSAVKAIAWCPWEPTLLATGGGICDQ---TVRLWN 367 (507)
Q Consensus 299 ~~~~~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~d~---~i~i~d 367 (507)
+|+|+ +.++++++ |+.|++||++.+ +.+..+..+ ...+.+++|+|++..++++++. |+ .|++||
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--d~~~~~i~~~d 246 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAK---KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATG--SDNDPSILIWD 246 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTT---EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEEC--CSSSCCCCEEE
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCC---CcceEEeccccccccCCceEEEEECCCCCCEEEEEEC--CCCCceEEEEe
Confidence 99999 78899988 699999999987 666666655 7889999999998777777765 77 999999
Q ss_pred CCCC-Ceeeeee-cC-CCeEEEEECC-CCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCC-CEEEEE
Q psy8285 368 SMNG-KEKCHVK-TD-SQVTSILWSE-QYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQ-TCVAAA 442 (507)
Q Consensus 368 ~~~~-~~~~~~~-~~-~~i~~~~~s~-~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~s~ 442 (507)
++++ +++..+. .+ ..+.+++|+| ++++|++ ++.|+.|++||+++++++..+.+|...|.+++|+|++ .+|+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s--~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~ 324 (416)
T 2pm9_A 247 LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLS--SGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACA 324 (416)
T ss_dssp TTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEE--EESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEEC
T ss_pred CCCCCCCcEEeecCccCceeEEEeCCCCCCeEEE--EeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEE
Confidence 9986 5666676 44 7899999999 8999999 7899999999999999999999999999999999998 899999
Q ss_pred eCCCcEEEEecCCCCcccc
Q psy8285 443 SADETISIWNCFPRDKKRK 461 (507)
Q Consensus 443 ~~dg~i~iw~~~~~~~~~~ 461 (507)
+.|+.|++|++.+......
T Consensus 325 ~~d~~i~iw~~~~~~~~~~ 343 (416)
T 2pm9_A 325 SFDNKIEVQTLQNLTNTLD 343 (416)
T ss_dssp CSSSEEEEEESCCCCCSSC
T ss_pred ecCCcEEEEEccCCCCCcc
Confidence 9999999999988765443
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-38 Score=290.55 Aligned_cols=238 Identities=19% Similarity=0.339 Sum_probs=180.9
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCc-----eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNK-----TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
|.+++|+|++ +++++.|+.|++|+..... ......+.+ |...|.+++|+|++++|+++ +.|+.|++||+..
T Consensus 61 v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~sp~g~~las~-s~D~~v~iwd~~~ 138 (330)
T 2hes_X 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEG-HENEVKGVAWSNDGYYLATC-SRDKSVWIWETDE 138 (330)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEE-ETTSCEEEEECCT
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcC-CCCcEEEEEECCCCCEEEEE-eCCCEEEEEeccC
Confidence 5678888877 6667799999999985421 223445566 99999999999999999999 9999999999943
Q ss_pred ----ceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCC-cCceeeecCCCceEEEEEcCC--CCEEEEEe
Q psy8285 241 ----ERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHS-DYPTAITREGDVVCGLKWSPN--GRYLASGS 311 (507)
Q Consensus 241 ----~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~ 311 (507)
.+++..+.+|...|.+++| ++.+|++++.|+.|++||..+.. .....+.+|...|.+++|+|+ +.+|++++
T Consensus 139 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 218 (330)
T 2hes_X 139 SGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS 218 (330)
T ss_dssp TCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE
T ss_pred CCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe
Confidence 2567788899999999999 68899999999999999987652 245677899999999999998 67899998
Q ss_pred -CCcEEEEEcCCCCCC-----CCeeeecC-CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC--eeeee-ecC-
Q psy8285 312 -NNTVKIWDFRQLDAK-----RPQVNNQC-HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK--EKCHV-KTD- 380 (507)
Q Consensus 312 -d~~i~i~d~~~~~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~-~~~- 380 (507)
|++|++||++..... .....+.. |...|.+++|++++ .+ ++++. |+.|++||..+++ ..... ..+
T Consensus 219 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l-~s~~~--dg~v~iw~~~~~~~~~~~~~~~~h~ 294 (330)
T 2hes_X 219 DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LI-ASVGA--DGVLAVYEEVDGEWKVFAKRALCHG 294 (330)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CE-EEEET--TSCEEEEEEETTEEEEEEEESCTTT
T ss_pred CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EE-EEEeC--CCEEEEEEcCCCceEEEeccccccc
Confidence 699999999764211 12233333 88999999999765 44 45544 9999999998774 23222 334
Q ss_pred C-CeEEEEECC--CCCeEEEEeccCCCeEEEEeCCC
Q psy8285 381 S-QVTSILWSE--QYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 381 ~-~i~~~~~s~--~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
. .+.+++|+| ++++|++ |+.||.|++||+..
T Consensus 295 ~~~v~~v~~~~~~~~~~las--~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 295 VYEINVVKWLELNGKTILAT--GGDDGIVNFWSLEK 328 (330)
T ss_dssp TSCEEEEEEC-----CCEEE--EETTSEEEEEEC--
T ss_pred cceEEEEEEecCCCceEEEE--ecCCCcEEEEEecc
Confidence 3 799999999 6888998 88999999999864
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-38 Score=297.76 Aligned_cols=281 Identities=15% Similarity=0.192 Sum_probs=241.5
Q ss_pred ccceeeeeeCCCCEEEEEcCCeEEEEECCCCc----eeEEEecCCCCCCceEEEEEccC----C---CeEEEEeCCCCcE
Q psy8285 165 DFYTSGLDWGYHDTLAVALDTSVYTWNTKTNK----TQLLVEYPTYDNAYISCVAWKPR----T---TDLAVTNTCTEYI 233 (507)
Q Consensus 165 ~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~----~---~~l~~~~~~dg~i 233 (507)
...|.+++|+|+.+++++.|+.|++|++.+++ ......+.+ |...|.+++|+|+ + ++|+++ +.||.|
T Consensus 16 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~s~-~~dg~i 93 (397)
T 1sq9_A 16 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATT-SFSGDL 93 (397)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEE-ETTSCE
T ss_pred hcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEec-CCCcEEEEEEecccccCCccccEEEEE-cCCCCE
Confidence 44688999999558888899999999999887 112233334 8999999999999 8 899998 899999
Q ss_pred EEEeCCCcee-----EEEEeec-----CccEEEEEee------CCE-EEEEecCCeEEEEECCC------CCcCce----
Q psy8285 234 DLWHEQEERL-----IQKLRTH-----MHQVIAMCWN------GNL-LSCGTIGGNILHYDVRT------HSDYPT---- 286 (507)
Q Consensus 234 ~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~------~~~-l~~~~~dg~i~i~d~~~------~~~~~~---- 286 (507)
++||+.+++. +..+..| ...|.+++|. ++. |++++.||.|++||+++ .+ ...
T Consensus 94 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~ 172 (397)
T 1sq9_A 94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL-TLNWSPT 172 (397)
T ss_dssp EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT-TTCCCCE
T ss_pred EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc-eeeccCc
Confidence 9999998876 8888888 5899999997 778 99999999999999987 44 233
Q ss_pred -ee-------ecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecC---C---CCCeeEEEEccCCCcE
Q psy8285 287 -AI-------TREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQC---H---LSAVKAIAWCPWEPTL 351 (507)
Q Consensus 287 -~~-------~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~ 351 (507)
.+ ..|...|.+++|+|++ ++++++ |+.|++||++++ +.+..+.. | ...|.+++|+|++..+
T Consensus 173 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l 248 (397)
T 1sq9_A 173 LELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL---RPLYNFESQHSMINNSNSIRSVKFSPQGSLL 248 (397)
T ss_dssp EEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT---EEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred ceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC---ceeEEEeccccccccCCccceEEECCCCCEE
Confidence 44 4478899999999999 999988 699999999987 77788887 8 9999999999998655
Q ss_pred EEEEccCCC---CeEEEEeCCCCCeeeeeec-------------C-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc
Q psy8285 352 LATGGGICD---QTVRLWNSMNGKEKCHVKT-------------D-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 352 ~~~~~~~~d---~~i~i~d~~~~~~~~~~~~-------------~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~ 414 (507)
++.+. | +.|++||+++++.+..+.. + ..+.+++|+|++++|++ ++.|+.|++||+.++
T Consensus 249 ~~~~~---d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 249 AIAHD---SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS--AGWDGKLRFWDVKTK 323 (397)
T ss_dssp EEEEE---ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE--EETTSEEEEEETTTT
T ss_pred EEEec---CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE--EeCCCeEEEEEcCCC
Confidence 55443 8 9999999999999888875 4 78999999999999999 789999999999999
Q ss_pred cEEEEee------cc---------------ccceeEEEECCCC----------CEEEEEeCCCcEEEEecCCCC
Q psy8285 415 HLIEELK------IH---------------QERILSAVLSPDQ----------TCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 415 ~~~~~~~------~~---------------~~~i~~~~~s~~~----------~~l~s~~~dg~i~iw~~~~~~ 457 (507)
+++..+. +| ...|++++|+|++ ++|++++.||.|++|++.+++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 324 ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 9999999 88 8999999999998 799999999999999998753
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=316.64 Aligned_cols=279 Identities=18% Similarity=0.305 Sum_probs=236.3
Q ss_pred ccceeeeeeCCCC---EEEEEcCCeEEEEECCCCce---eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 165 DFYTSGLDWGYHD---TLAVALDTSVYTWNTKTNKT---QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 165 ~~~i~~~~~s~~~---~~~~~~~~~i~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
...|.+++|+|++ +++++.|+.|++|++.+... .....+.+ |...|.+++|+|++++|+++ +.||.|++||+
T Consensus 382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~~g~~l~sg-s~Dg~v~vwd~ 459 (694)
T 3dm0_A 382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG-HSHFVEDVVLSSDGQFALSG-SWDGELRLWDL 459 (694)
T ss_dssp SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEEC-CSSCEEEEEECTTSSEEEEE-ETTSEEEEEET
T ss_pred CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecC-CCCcEEEEEECCCCCEEEEE-eCCCcEEEEEC
Confidence 4458999999864 66788999999999976432 22344556 99999999999999999999 99999999999
Q ss_pred CCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC--ceeeecCCCceEEEEEcCCC--CEEEEEe-
Q psy8285 239 QEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY--PTAITREGDVVCGLKWSPNG--RYLASGS- 311 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~--~~l~~~~- 311 (507)
.+++.+..+.+|...|.+++| ++++|++++.|++|++||....... .....+|...|.+++|+|++ ..+++++
T Consensus 460 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~ 539 (694)
T 3dm0_A 460 AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW 539 (694)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred CCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC
Confidence 999999999999999999999 6889999999999999998654311 11124688899999999987 5788888
Q ss_pred CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCC
Q psy8285 312 NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQ 391 (507)
Q Consensus 312 d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~ 391 (507)
|+.|++||++.. +....+.+|.+.|++++|+|++. ++++++. |+.|++||+++++.+..+..+..+.+++|+|+
T Consensus 540 d~~v~vwd~~~~---~~~~~~~~h~~~v~~v~~spdg~-~l~sg~~--Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~ 613 (694)
T 3dm0_A 540 DKTVKVWNLSNC---KLRSTLAGHTGYVSTVAVSPDGS-LCASGGK--DGVVLLWDLAEGKKLYSLEANSVIHALCFSPN 613 (694)
T ss_dssp TSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSS-EEEEEET--TSBCEEEETTTTEEEECCBCSSCEEEEEECSS
T ss_pred CCeEEEEECCCC---cEEEEEcCCCCCEEEEEEeCCCC-EEEEEeC--CCeEEEEECCCCceEEEecCCCcEEEEEEcCC
Confidence 699999999987 77888899999999999999985 5555554 99999999999999988888889999999999
Q ss_pred CCeEEEEeccCCCeEEEEeCCCccEEEEeeccc-------------------cceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 392 YRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQ-------------------ERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 392 ~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~-------------------~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
+.++++ + .++.|++||+.+++.+..+..+. ..+++++|+|+|++|++|+.||.|++|+
T Consensus 614 ~~~l~~--~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~ 690 (694)
T 3dm0_A 614 RYWLCA--A-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWG 690 (694)
T ss_dssp SSEEEE--E-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CcEEEE--E-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEe
Confidence 988887 4 36679999999998887765321 1378899999999999999999999999
Q ss_pred cC
Q psy8285 453 CF 454 (507)
Q Consensus 453 ~~ 454 (507)
+.
T Consensus 691 i~ 692 (694)
T 3dm0_A 691 IG 692 (694)
T ss_dssp C-
T ss_pred cc
Confidence 85
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-37 Score=290.88 Aligned_cols=277 Identities=16% Similarity=0.186 Sum_probs=229.7
Q ss_pred ccceeeeeeCCCC---EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEcc-CCCeEEEEeCCCCcEEEEeCCC
Q psy8285 165 DFYTSGLDWGYHD---TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKP-RTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 165 ~~~i~~~~~s~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
...|.+++|+|++ +++++.|+.|++||+.+++........+ |...|.+++|+| ++.+|+++ +.|+.|++||+.+
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~ 150 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMG-PGDAITGMKFNQFNTNQLFVS-SIRGATTLRDFSG 150 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCS-TTCBEEEEEEETTEEEEEEEE-ETTTEEEEEETTS
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCC-cCCceeEEEeCCCCCCEEEEE-eCCCEEEEEECCC
Confidence 3458899999986 6667799999999999988887777666 999999999999 67888888 9999999999986
Q ss_pred ceeEEEEee---cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC-EEEEEe-CC
Q psy8285 241 ERLIQKLRT---HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR-YLASGS-NN 313 (507)
Q Consensus 241 ~~~~~~~~~---~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~ 313 (507)
+.+..+.. |...|.+++| ++++|++++.|+.|++||++. .....+..|...|.+++|+|+++ ++++++ |+
T Consensus 151 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~ 227 (383)
T 3ei3_B 151 -SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG--HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDA 227 (383)
T ss_dssp -CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS--CEEEEEECSSSCEEEEEECSSCTTEEEEEETTS
T ss_pred -CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC--CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCC
Confidence 55555554 3478999999 689999999999999999953 35677888999999999999999 899988 69
Q ss_pred cEEEEEcCCCCCC-CCeeeecCCCCCeeEEEEcc-CCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-----------
Q psy8285 314 TVKIWDFRQLDAK-RPQVNNQCHLSAVKAIAWCP-WEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD----------- 380 (507)
Q Consensus 314 ~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----------- 380 (507)
.|++||+++.... ..+..+ +|...|.+++|+| ++..+++ ++. |+.|++||+++++....+..+
T Consensus 228 ~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~-~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 303 (383)
T 3ei3_B 228 TVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLT-TDQ--RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPI 303 (383)
T ss_dssp EEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEE-EES--SSEEEEEETTBTTSCSEEEECCBCCCTTSCCC
T ss_pred EEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEE-EcC--CCcEEEEECCCCccccccccccccccccccce
Confidence 9999999985332 334444 6999999999999 8865554 443 999999999988776655432
Q ss_pred -------CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec--cccceeEEEECCCCCEEEEEeCCCcEEEE
Q psy8285 381 -------SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI--HQERILSAVLSPDQTCVAAASADETISIW 451 (507)
Q Consensus 381 -------~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~s~~~dg~i~iw 451 (507)
..+..++|+|++++ + ++.|+.|++||+.+++.+..+.+ |...+..++|+|++++|++++ |+.|++|
T Consensus 304 ~~~~~p~~~~~~~~~s~dg~~--s--~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw 378 (383)
T 3ei3_B 304 KATWHPMYDLIVAGRYPDDQL--L--LNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIW 378 (383)
T ss_dssp CCEECSSSSEEEEECBCCTTT--C--TTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEE
T ss_pred EEeccCCCCceEEEecCCccc--c--cCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEE
Confidence 24555777788777 4 78999999999999999999987 456788889999999999997 9999999
Q ss_pred ecCC
Q psy8285 452 NCFP 455 (507)
Q Consensus 452 ~~~~ 455 (507)
|+.+
T Consensus 379 ~~~~ 382 (383)
T 3ei3_B 379 NRED 382 (383)
T ss_dssp ECC-
T ss_pred ecCC
Confidence 9875
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=328.71 Aligned_cols=380 Identities=13% Similarity=0.174 Sum_probs=293.8
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
+.+|.+.|++++|+|+|++ |++|+ .|+.|+|||+.+++++.++. |...|.+++|+|+++.+.+.
T Consensus 51 ~~~~~~~v~~~~~s~~~~~-l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~------------ 115 (814)
T 3mkq_A 51 IQVTETPVRAGKFIARKNW-IIVGS--DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG------------ 115 (814)
T ss_dssp EECCSSCEEEEEEEGGGTE-EEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEE------------
T ss_pred EecCCCcEEEEEEeCCCCE-EEEEe--CCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEE------------
Confidence 4689999999999999997 88887 79999999999999999988 88899999999988754432
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
..+..+..|.+... . .. ...+.
T Consensus 116 -~~dg~i~vw~~~~~-------------~--------------~~----------------------------~~~~~-- 137 (814)
T 3mkq_A 116 -SDDLTVKLWNWENN-------------W--------------AL----------------------------EQTFE-- 137 (814)
T ss_dssp -ETTSEEEEEEGGGT-------------S--------------EE----------------------------EEEEE--
T ss_pred -cCCCEEEEEECCCC-------------c--------------eE----------------------------EEEEc--
Confidence 11222333332211 0 00 00000
Q ss_pred CcccccceeeeeeCC-CC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEcc--CCCeEEEEeCCCCcEEE
Q psy8285 161 SIINDFYTSGLDWGY-HD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKP--RTTDLAVTNTCTEYIDL 235 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~-~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~dg~i~i 235 (507)
.....+.+++|+| ++ +++++.|+.|++||+.+++........ +...+.+++|+| ++++++++ +.||.|++
T Consensus 138 --~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~~ 212 (814)
T 3mkq_A 138 --GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG--QERGVNYVDYYPLPDKPYMITA-SDDLTIKI 212 (814)
T ss_dssp --CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC--CTTCCCEEEECCSTTCCEEEEE-CTTSEEEE
T ss_pred --CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC--CCCCEEEEEEEECCCCCEEEEE-eCCCEEEE
Confidence 1123477899999 55 667789999999999887765554432 558899999999 89999999 99999999
Q ss_pred EeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC--EEEEEe
Q psy8285 236 WHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR--YLASGS 311 (507)
Q Consensus 236 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~ 311 (507)
||+.+++.+..+..|...|.+++| ++.+|++++.||.|++||+.+.+ ....+..+...+.+++|+|+++ +++++.
T Consensus 213 ~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 291 (814)
T 3mkq_A 213 WDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK-VEKTLNVGLERSWCIATHPTGRKNYIASGF 291 (814)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS-EEEEECCSSSSEEEEEECTTCGGGEEEEEE
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-EEEEeecCCCcEEEEEEccCCCceEEEEEe
Confidence 999999999999999999999999 68899999999999999999876 5667778889999999999987 577777
Q ss_pred CCcEEEEEcCCCCCC----------------------------------------CCeeeecCCCCCeeEEEEccCCCcE
Q psy8285 312 NNTVKIWDFRQLDAK----------------------------------------RPQVNNQCHLSAVKAIAWCPWEPTL 351 (507)
Q Consensus 312 d~~i~i~d~~~~~~~----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~ 351 (507)
++.+.+|++...... ........+...+.+++|+|+++ +
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~ 370 (814)
T 3mkq_A 292 DNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGR-F 370 (814)
T ss_dssp TTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSS-E
T ss_pred CCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCC-E
Confidence 888999987643100 00011233455689999999995 5
Q ss_pred EEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEE
Q psy8285 352 LATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 431 (507)
Q Consensus 352 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~ 431 (507)
+++++ ++.+.+|++....... .+.+.+++|+|+++++++ ++.++.|++|+ .+.+|...+.++.
T Consensus 371 la~~~---~~~~~i~~~~~~~~~~----~~~i~~~~~spdg~~la~--~~~~g~v~l~~--------~~~~~~~~v~~~~ 433 (814)
T 3mkq_A 371 VTVVG---DGEYVIYTALAWRNKA----FGKCQDFVWGPDSNSYAL--IDETGQIKYYK--------NFKEVTSWSVPMH 433 (814)
T ss_dssp EEEEE---TTEEEEEETTTTEEEE----EEECSEEEECTTSSCEEE--ECTTCCEEEEE--------TTEECTTCCCCCS
T ss_pred EEEec---CCEEEEEECccccccC----CCceEEEEEeCCCCeEEE--EeCCCcEEEEE--------CCCCccceEEcCC
Confidence 55565 8999999986543322 246789999999999999 78899999996 3456888899999
Q ss_pred ECCCC---CEEEEEeCCCcEEEEecCCCCcccceeecCCCcceEEeeccCcc
Q psy8285 432 LSPDQ---TCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAILKQPV 480 (507)
Q Consensus 432 ~s~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (507)
|+|++ .+|++++.|+.|++||+.+++.......... .+.|+++...+
T Consensus 434 ~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~--~v~~s~dg~~l 483 (814)
T 3mkq_A 434 SAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK--DVIWSDNGELV 483 (814)
T ss_dssp SCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE--EEEECTTSSEE
T ss_pred cCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC--EEEEcCCCCEE
Confidence 99998 6889999999999999998887766543332 66777665443
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-38 Score=303.46 Aligned_cols=287 Identities=16% Similarity=0.215 Sum_probs=224.9
Q ss_pred ccceeeeeeCCCC---EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEcc-CCCeEEEEeCCCCcEEEEeCCC
Q psy8285 165 DFYTSGLDWGYHD---TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKP-RTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 165 ~~~i~~~~~s~~~---~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
+..|++|+|+|.+ +++++.||.|+|||+.+++......+.+ |.+.|++++|+| ++.+|+++ +.||+|++||+++
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~g-H~~~V~~l~f~p~~~~~l~s~-s~D~~v~iwd~~~ 196 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIG-AGGSITGLKFNPLNTNQFYAS-SMEGTTRLQDFKG 196 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCS-SSCCCCEEEECSSCTTEEEEE-CSSSCEEEEETTS
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccC-CCCCEEEEEEeCCCCCEEEEE-eCCCEEEEeeccC
Confidence 3459999999843 5566799999999999888777777777 999999999998 57888888 9999999999987
Q ss_pred ceeEEEEee--cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC-EEEEEe-CCc
Q psy8285 241 ERLIQKLRT--HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR-YLASGS-NNT 314 (507)
Q Consensus 241 ~~~~~~~~~--~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-d~~ 314 (507)
+........ +...+.+++| ++.+|++|+.||.|++||++.. ....+..|...|.+++|+|+++ ++++++ |+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~ 274 (435)
T 4e54_B 197 NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVDQT 274 (435)
T ss_dssp CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB
T ss_pred CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEecCcce
Confidence 654443333 3345677888 7899999999999999999764 3566788999999999999886 677887 699
Q ss_pred EEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC-------CeEEEE
Q psy8285 315 VKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS-------QVTSIL 387 (507)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-------~i~~~~ 387 (507)
|++||++.......+....+|...|++++|+|++..+++.+ . |+.|++||+.+++....+..+. .+..+.
T Consensus 275 v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~-~--D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (435)
T 4e54_B 275 VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD-Q--KSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAA 351 (435)
T ss_dssp CCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE-S--SSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCE
T ss_pred eeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc-C--CCEEEEEECCCCccceEEecccccccccceeEEEE
Confidence 99999998754455555567999999999999996555544 3 9999999999988766554321 234456
Q ss_pred ECCCCCeEEEEe----------ccCCCeEEEEeCCCccEEEEee-ccccceeEE-EECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 388 WSEQYRELVTSH----------GKQDCSLKMWEYPRLHLIEELK-IHQERILSA-VLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 388 ~s~~~~~l~~~~----------g~~d~~i~v~d~~~~~~~~~~~-~~~~~i~~~-~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
|+|++..++++. +..++.|++||..+++.+..+. +|...|.++ +|+|+|++|++|+ |+.|+||++++
T Consensus 352 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 352 WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 666666666531 2345689999999999988864 678888887 6999999999876 78999999998
Q ss_pred CCcc
Q psy8285 456 RDKK 459 (507)
Q Consensus 456 ~~~~ 459 (507)
++..
T Consensus 431 gk~r 434 (435)
T 4e54_B 431 ARTR 434 (435)
T ss_dssp ----
T ss_pred Ceee
Confidence 7653
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=280.35 Aligned_cols=278 Identities=14% Similarity=0.149 Sum_probs=238.2
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE- 241 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~- 241 (507)
...|.+++| +++ +++++.|+.|++||+.+++....... |...|.+++|+|++++|+++ +.||.|++|++...
T Consensus 18 ~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~~~~~~~ 92 (313)
T 3odt_A 18 DQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYT---GQGFLNSVCYDSEKELLLFG-GKDTMINGVPLFATS 92 (313)
T ss_dssp SSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEE---CSSCEEEEEEETTTTEEEEE-ETTSCEEEEETTCCT
T ss_pred CCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeec---CCccEEEEEECCCCCEEEEe-cCCCeEEEEEeeecC
Confidence 345888999 654 77778999999999988876665554 88999999999999999999 99999999998754
Q ss_pred --eeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcC-CCCEEEEEe-CCcEEE
Q psy8285 242 --RLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP-NGRYLASGS-NNTVKI 317 (507)
Q Consensus 242 --~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i 317 (507)
+.+..+..|...|.+++|+++.+++++.|+.|++|| .. .....+..|...+.+++|+| +++++++++ |+.|++
T Consensus 93 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 169 (313)
T 3odt_A 93 GEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EG-SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKL 169 (313)
T ss_dssp TSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TT-EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred CCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CC-cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEE
Confidence 567778889999999999999999999999999999 22 35667788999999999998 899999999 699999
Q ss_pred EEcCCCCCCCCeeeecC-CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeE
Q psy8285 318 WDFRQLDAKRPQVNNQC-HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYREL 395 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l 395 (507)
||.. .....+.. |...+.+++|+|++. +++ ++. |+.|++||+++++++..+..+ ..+.+++|+|++ .+
T Consensus 170 ~d~~-----~~~~~~~~~~~~~i~~~~~~~~~~-~~~-~~~--dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l 239 (313)
T 3odt_A 170 WQND-----KVIKTFSGIHNDVVRHLAVVDDGH-FIS-CSN--DGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DI 239 (313)
T ss_dssp EETT-----EEEEEECSSCSSCEEEEEEEETTE-EEE-EET--TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CE
T ss_pred EecC-----ceEEEEeccCcccEEEEEEcCCCe-EEE-ccC--CCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CE
Confidence 9943 45556665 889999999999985 544 443 999999999999999988866 789999999999 57
Q ss_pred EEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccccee
Q psy8285 396 VTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 463 (507)
++ ++.||.|++||+.+++++..+..|...|.+++|+|+++ +++++.||.|++|++.+++......
T Consensus 240 ~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 240 VS--CGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp EE--EETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC---
T ss_pred EE--EecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhh
Confidence 77 77899999999999999999999999999999999998 6679999999999999877665543
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=291.53 Aligned_cols=287 Identities=15% Similarity=0.274 Sum_probs=242.1
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|.+|++.|++|+|+|+|++ |++|+ .|+.|+|||+.+++++..+. |...|
T Consensus 28 l~~h~~~v~~~~~s~~~~~-l~~~~--~dg~i~vwd~~~~~~~~~~~~h~~~v--------------------------- 77 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDL-LFSCS--KDSSASVWYSLNGERLGTLDGHTGTI--------------------------- 77 (369)
T ss_dssp EECCSSCEEEEEECTTSCE-EEEEE--SSSCEEEEETTTCCEEEEECCCSSCE---------------------------
T ss_pred EEEeeceEEEEEEcCCCCE-EEEEe--CCCEEEEEeCCCchhhhhhhhcCCcE---------------------------
Confidence 6899999999999999997 78887 79999999999998776654 33333
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 78 -------------------------------------------------------------------------------- 77 (369)
T 3zwl_B 78 -------------------------------------------------------------------------------- 77 (369)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC-----CcE
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT-----EYI 233 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~i 233 (507)
.+++|+|++ +++++.|+.|++||+.+++...... +...+.+++|+|++++++++ +.+ |.|
T Consensus 78 --------~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~-~~~~~~~~g~i 144 (369)
T 3zwl_B 78 --------WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK----SPVPVKRVEFSPCGNYFLAI-LDNVMKNPGSI 144 (369)
T ss_dssp --------EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE----CSSCEEEEEECTTSSEEEEE-ECCBTTBCCEE
T ss_pred --------EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee----cCCCeEEEEEccCCCEEEEe-cCCccCCCCEE
Confidence 345566654 6677899999999999998877766 67789999999999999998 777 999
Q ss_pred EEEeCCCce-----------eEEEEeecCc--cEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEE
Q psy8285 234 DLWHEQEER-----------LIQKLRTHMH--QVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGL 298 (507)
Q Consensus 234 ~iwd~~~~~-----------~~~~~~~~~~--~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 298 (507)
++||+.... ....+..|.. .+.+++| ++++|++++.||.|++||+++.......+..|...|.++
T Consensus 145 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 224 (369)
T 3zwl_B 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM 224 (369)
T ss_dssp EEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE
T ss_pred EEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE
Confidence 999987653 3344555666 8999999 688999999999999999998555677788899999999
Q ss_pred EEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC--------------eE
Q psy8285 299 KWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ--------------TV 363 (507)
Q Consensus 299 ~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~--------------~i 363 (507)
+|+|++++|++++ |+.|++||++++ +.+..+. +...+..++|+|++..+++.+. ++ .+
T Consensus 225 ~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~i 297 (369)
T 3zwl_B 225 QFSPDLTYFITSSRDTNSFLVDVSTL---QVLKKYE-TDCPLNTAVITPLKEFIILGGG---QEAKDVTTTSANEGKFEA 297 (369)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTC---CEEEEEE-CSSCEEEEEECSSSSEEEEEEC---CC-------------CEE
T ss_pred EECCCCCEEEEecCCceEEEEECCCC---ceeeeec-CCCCceeEEecCCCceEEEeec---CCCceEEEEecCCCccee
Confidence 9999999999998 699999999987 6666666 7889999999999976666554 55 89
Q ss_pred EEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEe
Q psy8285 364 RLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEEL 420 (507)
Q Consensus 364 ~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~ 420 (507)
++||..+++.+..+..+ ..|.+++|+|++++|++ ++.||.|++|++..+.....+
T Consensus 298 ~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 298 RFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYAS--GGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE--EETTSEEEEEEECHHHHTCCC
T ss_pred EEEecCCCcchhheecccCcEEEEEECCCCCEEEE--EcCCCeEEEEECccccchhHH
Confidence 99999999999988876 78999999999999999 789999999999876544333
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=291.49 Aligned_cols=282 Identities=16% Similarity=0.235 Sum_probs=233.9
Q ss_pred ccceeeeeeCCCC--EEEEE-c---CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccC---CCeEEEEeCCCCcEEE
Q psy8285 165 DFYTSGLDWGYHD--TLAVA-L---DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR---TTDLAVTNTCTEYIDL 235 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~-~---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~~dg~i~i 235 (507)
...|.+++|+|++ +++++ . |+.|++|++.+++........ |...|.+++|+|+ +.+|+++ +.||.|++
T Consensus 18 ~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~-~~dg~i~i 94 (357)
T 3i2n_A 18 NYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIE--KAKPIKCGTFGATSLQQRYLATG-DFGGNLHI 94 (357)
T ss_dssp SSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEE--ESSCEEEEECTTCCTTTCCEEEE-ETTSCEEE
T ss_pred CCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeec--ccCcEEEEEEcCCCCCCceEEEe-cCCCeEEE
Confidence 4468899999987 55555 3 899999999998876555443 8899999999999 6899998 99999999
Q ss_pred EeCCCce-eEEEEeecCccEEEEEe--------eCCEEEEEecCCeEEEEECCCCCcCceeeecCCC----ceEEEE---
Q psy8285 236 WHEQEER-LIQKLRTHMHQVIAMCW--------NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGD----VVCGLK--- 299 (507)
Q Consensus 236 wd~~~~~-~~~~~~~~~~~v~~~~~--------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~v~~~~--- 299 (507)
||+.+++ .+..+.+|...|.++.| ++++|++++.||.|++||+++.......+..+.. .+.+++
T Consensus 95 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 174 (357)
T 3i2n_A 95 WNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGN 174 (357)
T ss_dssp ECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEEC
T ss_pred EeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEe
Confidence 9999988 88899999999999965 5789999999999999999987655666655544 788888
Q ss_pred -EcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEcc---CCCcEEEEEccCCCCeEEEEeCCCCCee
Q psy8285 300 -WSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCP---WEPTLLATGGGICDQTVRLWNSMNGKEK 374 (507)
Q Consensus 300 -~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~d~~i~i~d~~~~~~~ 374 (507)
|+|+++++++++ |+.|++||++++ +. .....|...|.+++|+| ++..+++.+. |+.|++||+++++..
T Consensus 175 ~~~~~~~~l~~~~~d~~i~i~d~~~~---~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~ 247 (357)
T 3i2n_A 175 AYNQEERVVCAGYDNGDIKLFDLRNM---AL-RWETNIKNGVCSLEFDRKDISMNKLVATSL---EGKFHVFDMRTQHPT 247 (357)
T ss_dssp CCC-CCCEEEEEETTSEEEEEETTTT---EE-EEEEECSSCEEEEEESCSSSSCCEEEEEES---TTEEEEEEEEEEETT
T ss_pred ccCCCCCEEEEEccCCeEEEEECccC---ce-eeecCCCCceEEEEcCCCCCCCCEEEEECC---CCeEEEEeCcCCCcc
Confidence 788999999999 599999999986 33 44456889999999999 7765555443 999999999887766
Q ss_pred eeee-----cC-CCeEEEEECCCCC-eEEEEeccCCCeEEEEeCCCc-------------------cEEEEeecccccee
Q psy8285 375 CHVK-----TD-SQVTSILWSEQYR-ELVTSHGKQDCSLKMWEYPRL-------------------HLIEELKIHQERIL 428 (507)
Q Consensus 375 ~~~~-----~~-~~i~~~~~s~~~~-~l~~~~g~~d~~i~v~d~~~~-------------------~~~~~~~~~~~~i~ 428 (507)
..+. .+ ..+.+++|+|+++ ++++ ++.||.|++||++++ +.+..+.+|...|+
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~ 325 (357)
T 3i2n_A 248 KGFASVSEKAHKSTVWQVRHLPQNRELFLT--AGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPIS 325 (357)
T ss_dssp TEEEEEEEECCSSCEEEEEEETTEEEEEEE--EETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEE
T ss_pred cceeeeccCCCcCCEEEEEECCCCCcEEEE--EeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCee
Confidence 5553 44 7899999999999 6777 789999999998753 46777889999999
Q ss_pred EEEECCCCCEEE-EEeCCCcEEEEecCCCCc
Q psy8285 429 SAVLSPDQTCVA-AASADETISIWNCFPRDK 458 (507)
Q Consensus 429 ~~~~s~~~~~l~-s~~~dg~i~iw~~~~~~~ 458 (507)
+++|+|++++|+ +++.||.|++|++.+.+.
T Consensus 326 ~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 326 SLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred EEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 999999999998 899999999999987653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=292.90 Aligned_cols=286 Identities=15% Similarity=0.210 Sum_probs=236.8
Q ss_pred cceeeeeeCCCC-EE-EEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 166 FYTSGLDWGYHD-TL-AVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 166 ~~i~~~~~s~~~-~~-~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
..|.+++|+|++ ++ +++.++.|++|++.+++......+.+ |...|.+++|+|++++|+++ +.||.|++||+.+++.
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTC-GTDRNAYVWTLKGRTW 86 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEE-ETTSCEEEEEEETTEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEEE-cCCCeEEEEECCCCee
Confidence 357899999998 44 45589999999999887444555555 99999999999999999999 8999999999988875
Q ss_pred EEEE--eecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc---CceeeecCCCceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 244 IQKL--RTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD---YPTAITREGDVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 244 ~~~~--~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
...+ ..|...|.+++| ++++|++++.|+.|++||++.... .......|...|.+++|+|++++|++++ |+.|
T Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 166 (372)
T 1k8k_C 87 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 166 (372)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCE
Confidence 5544 568999999999 688999999999999999987652 2233356889999999999999999999 6999
Q ss_pred EEEEcCCC---------------CCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC
Q psy8285 316 KIWDFRQL---------------DAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380 (507)
Q Consensus 316 ~i~d~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 380 (507)
++||++.. ...+.+..+..|...|.+++|+|++..+++.+ . |+.|++||+++++++..+..+
T Consensus 167 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~--d~~i~i~d~~~~~~~~~~~~~ 243 (372)
T 1k8k_C 167 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-H--DSTVCLADADKKMAVATLASE 243 (372)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-T--TTEEEEEEGGGTTEEEEEECS
T ss_pred EEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe-C--CCEEEEEECCCCceeEEEccC
Confidence 99996521 01266777778999999999999986555544 3 999999999999999988877
Q ss_pred -CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC--cc--------------------------------EE------EE
Q psy8285 381 -SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR--LH--------------------------------LI------EE 419 (507)
Q Consensus 381 -~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~--~~--------------------------------~~------~~ 419 (507)
..+.+++|+|+++++++ | .|+.|++|++.+ ++ .. ..
T Consensus 244 ~~~v~~~~~~~~~~~l~~--~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (372)
T 1k8k_C 244 TLPLLAVTFITESSLVAA--G-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG 320 (372)
T ss_dssp SCCEEEEEEEETTEEEEE--E-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CC
T ss_pred CCCeEEEEEecCCCEEEE--E-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccc
Confidence 58999999999998887 6 799999999987 32 10 23
Q ss_pred e-eccccceeEEEEC-CCC---CEEEEEeCCCcEEEEecCCCCcc
Q psy8285 420 L-KIHQERILSAVLS-PDQ---TCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 420 ~-~~~~~~i~~~~~s-~~~---~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
+ .+|...|++++|. ++| .+|++++.||.|++|++.+.+..
T Consensus 321 ~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 321 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp CSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred ccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 3 4899999999976 566 99999999999999999876544
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-37 Score=314.24 Aligned_cols=230 Identities=16% Similarity=0.275 Sum_probs=192.8
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
|.+++|+|++ +++++.|+.|++||+.+++....+. + |...|.+++|+|++++|+++ +.|++|++||........
T Consensus 433 v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~--~-h~~~v~~~~~s~~~~~l~s~-s~D~~i~iwd~~~~~~~~ 508 (694)
T 3dm0_A 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV--G-HTKDVLSVAFSLDNRQIVSA-SRDRTIKLWNTLGECKYT 508 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--C-CSSCEEEEEECTTSSCEEEE-ETTSCEEEECTTSCEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEe--C-CCCCEEEEEEeCCCCEEEEE-eCCCEEEEEECCCCccee
Confidence 5678888877 6677899999999999887665544 4 99999999999999999999 999999999987654433
Q ss_pred EE---eecCccEEEEEee--C--CEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEE
Q psy8285 246 KL---RTHMHQVIAMCWN--G--NLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKI 317 (507)
Q Consensus 246 ~~---~~~~~~v~~~~~~--~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i 317 (507)
.. .+|...|.+++|+ + ..|++++.|+.|++||+++.+ ....+.+|...|++++|+|++++|++++ |+.|++
T Consensus 509 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~i 587 (694)
T 3dm0_A 509 ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLL 587 (694)
T ss_dssp ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEE
T ss_pred eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc-EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 32 3588899999993 2 589999999999999999875 5667889999999999999999999999 699999
Q ss_pred EEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-----------------
Q psy8285 318 WDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD----------------- 380 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----------------- 380 (507)
||++++ +.+..+. +...+.+++|+|++ .+++++. ++.|++||+++++.+..+..+
T Consensus 588 wd~~~~---~~~~~~~-~~~~v~~~~~sp~~-~~l~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (694)
T 3dm0_A 588 WDLAEG---KKLYSLE-ANSVIHALCFSPNR-YWLCAAT---EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATK 659 (694)
T ss_dssp EETTTT---EEEECCB-CSSCEEEEEECSSS-SEEEEEE---TTEEEEEETTTTEEEEEECCCCC---------------
T ss_pred EECCCC---ceEEEec-CCCcEEEEEEcCCC-cEEEEEc---CCCEEEEECCCCCChhhhccccccccccccccccccCC
Confidence 999987 5666655 45689999999987 5666665 788999999999877765422
Q ss_pred ---CCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 381 ---SQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 381 ---~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
..+++++|+|+|++|++ |+.||.|++|++.
T Consensus 660 ~~~~~~~~l~~spdg~~l~s--gs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 660 RKVIYCTSLNWSADGSTLFS--GYTDGVIRVWGIG 692 (694)
T ss_dssp -CCCCEEEEEECTTSSEEEE--EETTSEEEEEEC-
T ss_pred ceeEEeeeEEEcCCCCEEEE--EcCCCeEEEEecc
Confidence 13688999999999999 8899999999985
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=291.31 Aligned_cols=286 Identities=15% Similarity=0.274 Sum_probs=228.4
Q ss_pred CcccccceeeeeeccCcceeeecccccc---ccceeeecccCCcceeee--ecCcccceeeccccccccccCCccCCcee
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGIC---DQTVRLWNSMNGKEKCHV--KTDSQVTSILWSEQYRESSRSKMVNTDRY 76 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~---d~~i~iWd~~~g~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~~~~ 76 (507)
+++|.+.|++++|+|++++++++|+ . |+.|+|||+.+++..... .+...|.+
T Consensus 14 ~~~h~~~v~~~~~~p~~~~l~~~~s--~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~--------------------- 70 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSAKFVTMGN--FARGTGVIQLYEIQHGDLKLLREIEKAKPIKC--------------------- 70 (357)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEEC----CCCEEEEEEEECSSSEEEEEEEEESSCEEE---------------------
T ss_pred ccCCCCceEEEEEcCCCceEEEecC--ccCCCcEEEEEeCCCCcccceeeecccCcEEE---------------------
Confidence 3689999999999999988888887 6 999999999988764432 23334444
Q ss_pred EeecCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhh
Q psy8285 77 VVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERI 156 (507)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (507)
T Consensus 71 -------------------------------------------------------------------------------- 70 (357)
T 3i2n_A 71 -------------------------------------------------------------------------------- 70 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCcccccceeeeeeCCC----C-EEEEEcCCeEEEEECCCCc-eeEEEecCCCCCCceEEEEE------ccCCCeEE
Q psy8285 157 LEAPSIINDFYTSGLDWGYH----D-TLAVALDTSVYTWNTKTNK-TQLLVEYPTYDNAYISCVAW------KPRTTDLA 224 (507)
Q Consensus 157 ~~~~~~~~~~~i~~~~~s~~----~-~~~~~~~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~------~~~~~~l~ 224 (507)
++|+|+ . +++++.|+.|++||+.+++ .... +.+ |...|.++.| +|++++|+
T Consensus 71 --------------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~-~~~~v~~~~~~~~~~~s~~~~~l~ 133 (357)
T 3i2n_A 71 --------------GTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS--VKG-HKEIINAIDGIGGLGIGEGAPEIV 133 (357)
T ss_dssp --------------EECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE--ECC-CSSCEEEEEEESGGGCC-CCCEEE
T ss_pred --------------EEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE--EEe-cccceEEEeeccccccCCCccEEE
Confidence 445444 2 6777899999999999877 4433 344 8999999955 68899999
Q ss_pred EEeCCCCcEEEEeCCCce-eEEEEeecCc----cEEEEE----e--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCC
Q psy8285 225 VTNTCTEYIDLWHEQEER-LIQKLRTHMH----QVIAMC----W--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGD 293 (507)
Q Consensus 225 ~~~~~dg~i~iwd~~~~~-~~~~~~~~~~----~v~~~~----~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 293 (507)
++ +.||.|++||+.+++ .+..+..|.. .+.++. | ++++|++++.||.|++||+++.+ ......|..
T Consensus 134 ~~-~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~ 210 (357)
T 3i2n_A 134 TG-SRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA--LRWETNIKN 210 (357)
T ss_dssp EE-ETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE--EEEEEECSS
T ss_pred EE-eCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc--eeeecCCCC
Confidence 99 999999999999887 6777766554 788988 3 78999999999999999999876 345567889
Q ss_pred ceEEEEEcC---CCCEEEEEe-CCcEEEEEcCCCCCCCCeeee-----cCCCCCeeEEEEccCCCcEEEEEccCCCCeEE
Q psy8285 294 VVCGLKWSP---NGRYLASGS-NNTVKIWDFRQLDAKRPQVNN-----QCHLSAVKAIAWCPWEPTLLATGGGICDQTVR 364 (507)
Q Consensus 294 ~v~~~~~~~---~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~ 364 (507)
.|.+++|+| +++++++++ |+.|++||++.+ +....+ ..|...|++++|+|++..++++++. |+.|+
T Consensus 211 ~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~ 285 (357)
T 3i2n_A 211 GVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ---HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGG--AGGLH 285 (357)
T ss_dssp CEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE---ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEET--TSEEE
T ss_pred ceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC---CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeC--CCcEE
Confidence 999999999 999999999 699999999886 333333 3899999999999999757777765 99999
Q ss_pred EEeCCCCC-------------------eeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE
Q psy8285 365 LWNSMNGK-------------------EKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL 416 (507)
Q Consensus 365 i~d~~~~~-------------------~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~ 416 (507)
+||++.+. .+..+..+ ..|.+++|+|++++|+++ ++.|+.|++||+.+.+.
T Consensus 286 iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s-~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 286 LWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVC-SSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEE-EETTSEEEEEEECC---
T ss_pred EeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEE-ecCCCcEEEEECCCccc
Confidence 99997653 34455555 689999999999999833 78899999999987654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-37 Score=289.74 Aligned_cols=281 Identities=14% Similarity=0.205 Sum_probs=222.4
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee---cCcccceeeccccccccccCCccCCceeEe
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK---TDSQVTSILWSEQYRESSRSKMVNTDRYVV 78 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~---~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~ 78 (507)
|.+|.+.|++++|+|+++.+|++|+ .|+.|+|||+.+++....+. +..
T Consensus 69 ~~~h~~~v~~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~h~~--------------------------- 119 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTHPTTVAVGS--KGGDIILWDYDVQNKTSFIQGMGPGD--------------------------- 119 (383)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEE--BTSCEEEEETTSTTCEEEECCCSTTC---------------------------
T ss_pred ccCCCCCEEEEEECCCCCCEEEEEc--CCCeEEEEeCCCcccceeeecCCcCC---------------------------
Confidence 5689999999999999944599998 89999999999887655432 222
Q ss_pred ecCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhc
Q psy8285 79 DRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILE 158 (507)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (507)
T Consensus 120 -------------------------------------------------------------------------------- 119 (383)
T 3ei3_B 120 -------------------------------------------------------------------------------- 119 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccccceeeeeeCC-CC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEE
Q psy8285 159 APSIINDFYTSGLDWGY-HD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDL 235 (507)
Q Consensus 159 ~~~~~~~~~i~~~~~s~-~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~i 235 (507)
.|.+++|+| ++ +++++.|+.|++||+.+..........+ +...|.+++|+|++++|+++ +.|+.|++
T Consensus 120 --------~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~d~~i~i 189 (383)
T 3ei3_B 120 --------AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDS-WDYWYCCVDVSVSRQMLATG-DSTGRLLL 189 (383)
T ss_dssp --------BEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCC-SSCCEEEEEEETTTTEEEEE-ETTSEEEE
T ss_pred --------ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCC-CCCCeEEEEECCCCCEEEEE-CCCCCEEE
Confidence 244566777 33 6677899999999998755444444333 56889999999999999999 99999999
Q ss_pred EeCCCceeEEEEeecCccEEEEEe--eCC-EEEEEecCCeEEEEECCCCCc--CceeeecCCCceEEEEEcC-CCCEEEE
Q psy8285 236 WHEQEERLIQKLRTHMHQVIAMCW--NGN-LLSCGTIGGNILHYDVRTHSD--YPTAITREGDVVCGLKWSP-NGRYLAS 309 (507)
Q Consensus 236 wd~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~ 309 (507)
||+ +++.+..+..|...|.+++| +++ +|++++.|+.|++||+++.+. .......|...|.+++|+| ++++|++
T Consensus 190 ~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~ 268 (383)
T 3ei3_B 190 LGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLT 268 (383)
T ss_dssp EET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEE
T ss_pred EEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEE
Confidence 999 57888899999999999999 466 999999999999999997431 1223337899999999999 9999999
Q ss_pred Ee-CCcEEEEEcCCCCCCCCeeeecCC-------C----------CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC
Q psy8285 310 GS-NNTVKIWDFRQLDAKRPQVNNQCH-------L----------SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG 371 (507)
Q Consensus 310 ~~-d~~i~i~d~~~~~~~~~~~~~~~~-------~----------~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 371 (507)
++ |+.|++||++++ .....+..| . ..+..++|+|++.. +++ .|+.|++||+.++
T Consensus 269 ~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~---s~s--~d~~i~iwd~~~~ 340 (383)
T 3ei3_B 269 TDQRNEIRVYSSYDW---SKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL---LLN--DKRTIDIYDANSG 340 (383)
T ss_dssp EESSSEEEEEETTBT---TSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT---CTT--CCCCEEEEETTTC
T ss_pred EcCCCcEEEEECCCC---ccccccccccccccccccceEEeccCCCCceEEEecCCccc---ccC--CCCeEEEEecCCC
Confidence 99 699999999987 343333322 2 23444666666644 333 4999999999999
Q ss_pred CeeeeeecC---CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 372 KEKCHVKTD---SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 372 ~~~~~~~~~---~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
+++..+..+ ..+..++|+|++++|++ ++ |+.|++||+++
T Consensus 341 ~~~~~l~~~~~~~~~~~~~~s~~g~~l~s--~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 341 GLVHQLRDPNAAGIISLNKFSPTGDVLAS--GM-GFNILIWNRED 382 (383)
T ss_dssp CEEEEECBTTBCSCCCEEEECTTSSEEEE--EE-TTEEEEEECC-
T ss_pred ceeeeecCCCCCceEEEEEEecCccEEEE--ec-CCcEEEEecCC
Confidence 999988753 45777799999999998 65 89999999864
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-37 Score=285.96 Aligned_cols=297 Identities=13% Similarity=0.168 Sum_probs=245.4
Q ss_pred ceeeeeeCCCC-EEEE-EcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee-
Q psy8285 167 YTSGLDWGYHD-TLAV-ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL- 243 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~- 243 (507)
.+.+++|+|++ +++. ..++.+..|...... ......+ |...|.+++|+|++++++++ + ||.|++||+.+++.
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-h~~~v~~~~~~~~~~~l~~~-~-dg~i~iw~~~~~~~~ 85 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHA--RQINTLN-HGEVVCAVTISNPTRHVYTG-G-KGCVKVWDISHPGNK 85 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEE--EEEEEEC-CSSCCCEEEECSSSSEEEEE-C-BSEEEEEETTSTTCC
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCcc--ccceecc-CCCceEEEEEecCCcEEEEc-C-CCeEEEEECCCCCce
Confidence 36789999998 5544 345556555443322 2222224 89999999999999999998 6 99999999987653
Q ss_pred --EEEEe--ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc-CceeeecCCCceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 244 --IQKLR--THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD-YPTAITREGDVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 244 --~~~~~--~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
+..+. .|...+.+++| ++++|++++.|+.|++||+++.+. ....+..|...+.+++|+|+++++++++ |+.|
T Consensus 86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v 165 (337)
T 1gxr_A 86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165 (337)
T ss_dssp SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence 33333 68999999999 688999999999999999988652 3445677889999999999999999998 6999
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeE
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYREL 395 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l 395 (507)
++||++++ +.+..+..|...+.+++|+|++..+++.+. |+.|++||+++++.+..+.....+.+++|+|+++++
T Consensus 166 ~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l 239 (337)
T 1gxr_A 166 AVWDLHNQ---TLVRQFQGHTDGASCIDISNDGTKLWTGGL---DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWL 239 (337)
T ss_dssp EEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEET---TSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEE
T ss_pred EEEeCCCC---ceeeeeecccCceEEEEECCCCCEEEEEec---CCcEEEEECCCCceEeeecCCCceEEEEECCCCCEE
Confidence 99999987 778888889999999999999865555443 999999999999999888888899999999999999
Q ss_pred EEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecCCCcceEEee
Q psy8285 396 VTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAI 475 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 475 (507)
++ ++.++.|++||+.+++.. .+..|...|.+++|+|++++|++++.||.|++|++.+++..........+..+.|.+
T Consensus 240 ~~--~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~ 316 (337)
T 1gxr_A 240 AV--GMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV 316 (337)
T ss_dssp EE--EETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECT
T ss_pred EE--EcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECC
Confidence 99 788999999999987754 567899999999999999999999999999999999988876655555666666665
Q ss_pred cc
Q psy8285 476 LK 477 (507)
Q Consensus 476 ~~ 477 (507)
+.
T Consensus 317 ~~ 318 (337)
T 1gxr_A 317 DD 318 (337)
T ss_dssp TS
T ss_pred CC
Confidence 43
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=292.30 Aligned_cols=279 Identities=14% Similarity=0.282 Sum_probs=232.8
Q ss_pred ceeeeeeCCCC---EEEEEcCCeEEEEEC----CCCc------eeEEEec--CCC-----CCCceEEEEEccCCCeEEEE
Q psy8285 167 YTSGLDWGYHD---TLAVALDTSVYTWNT----KTNK------TQLLVEY--PTY-----DNAYISCVAWKPRTTDLAVT 226 (507)
Q Consensus 167 ~i~~~~~s~~~---~~~~~~~~~i~iw~~----~~~~------~~~~~~~--~~~-----~~~~v~~~~~~~~~~~l~~~ 226 (507)
.|.+++|+|++ +++++.|+.|++|++ .+++ ....... .+. |...|++++|+|++++|+++
T Consensus 47 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 126 (425)
T 1r5m_A 47 NIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTG 126 (425)
T ss_dssp CCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEE
T ss_pred ceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEE
Confidence 57899999985 455678999999999 8877 2333221 110 46699999999999999999
Q ss_pred eCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCc----------
Q psy8285 227 NTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDV---------- 294 (507)
Q Consensus 227 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------- 294 (507)
+.||.|++|| .+++.+..+..|...|.+++| ++++|++++.|+.|++||+.+++ ....+..+...
T Consensus 127 -~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~ 203 (425)
T 1r5m_A 127 -VENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT-VMQHFELKETGGSSINAENHS 203 (425)
T ss_dssp -ETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE-EEEEECCC-------------
T ss_pred -eCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc-EEEEeeccccCccceeecccc
Confidence 8999999999 677888899999999999999 68899999999999999998875 44555555555
Q ss_pred -----eEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC
Q psy8285 295 -----VCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM 369 (507)
Q Consensus 295 -----v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~ 369 (507)
+.+++|+|++.+++.+.++.|++||++.+ +.+..+..|...|.+++|+|++..+++.+ . |+.|++||++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~--d~~i~i~d~~ 277 (425)
T 1r5m_A 204 GDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK---TPTGKLIGHHGPISVLEFNDTNKLLLSAS-D--DGTLRIWHGG 277 (425)
T ss_dssp --CCCBSCCEEEETTEEEEECGGGCEEEEETTCS---SCSEEECCCSSCEEEEEEETTTTEEEEEE-T--TSCEEEECSS
T ss_pred CCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC---ceeeeeccCCCceEEEEECCCCCEEEEEc-C--CCEEEEEECC
Confidence 88999999876444444799999999987 77778888999999999999986555544 3 9999999999
Q ss_pred CCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcE
Q psy8285 370 NGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETI 448 (507)
Q Consensus 370 ~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i 448 (507)
+++.+..+..+ ..+.+++|+|++ ++++ ++.|+.|++||+++++.+..+..|...|.+++|+|++++|++++.||.|
T Consensus 278 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 354 (425)
T 1r5m_A 278 NGNSQNCFYGHSQSIVSASWVGDD-KVIS--CSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQV 354 (425)
T ss_dssp SBSCSEEECCCSSCEEEEEEETTT-EEEE--EETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCccceEecCCCccEEEEEECCCC-EEEE--EeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeE
Confidence 99988888755 789999999999 7777 7889999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCC
Q psy8285 449 SIWNCFPRD 457 (507)
Q Consensus 449 ~iw~~~~~~ 457 (507)
++|++.+.+
T Consensus 355 ~i~~~~~~~ 363 (425)
T 1r5m_A 355 NVYDLKKLN 363 (425)
T ss_dssp EEEECHHHH
T ss_pred EEEECCCCc
Confidence 999998766
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=288.58 Aligned_cols=273 Identities=16% Similarity=0.299 Sum_probs=190.4
Q ss_pred ceeeeeeCC-CC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCC---CeEEEEeCCCCcEEEEeCCC
Q psy8285 167 YTSGLDWGY-HD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRT---TDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 167 ~i~~~~~s~-~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~dg~i~iwd~~~ 240 (507)
.|.+++|+| ++ +++++.|+.|++||+.+++...... +...+.++.|+|.+ .+++++ +.+|.|++||+.+
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~d~~~ 175 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN----FEETVYSHHMSPVSTKHCLVAVG-TRGPKVQLCDLKS 175 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECSSCSSCCEEEEE-ESSSSEEEEESSS
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----CCCceeeeEeecCCCCCcEEEEE-cCCCeEEEEeCCC
Confidence 477899998 44 7777889999999999998877776 56789999999855 478888 9999999999999
Q ss_pred ceeEEEEeecCccEEEEEe--eCC-EEEEEecCCeEEEEECCCCCcCceee---------------ecCCCceEEEEEcC
Q psy8285 241 ERLIQKLRTHMHQVIAMCW--NGN-LLSCGTIGGNILHYDVRTHSDYPTAI---------------TREGDVVCGLKWSP 302 (507)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~---------------~~~~~~v~~~~~~~ 302 (507)
++.+..+..|...|.+++| +++ +|++++.||.|++||++........+ ..|...|.+++|+|
T Consensus 176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 9999999999999999999 455 69999999999999998765333333 57888999999999
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCC-----CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeee
Q psy8285 303 NGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCH-----LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH 376 (507)
Q Consensus 303 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 376 (507)
++++|++++ |+.|++||++++. .......+ ...+........+..+++++. ++.|++||+.+++++..
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~v~d~~~~~~~~~ 329 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGE---NTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY---GSTIAVYTVYSGEQITM 329 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCC---BCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE---TTEEEEEETTTCCEEEE
T ss_pred CCCEEEEecCCCeEEEEECCCCc---cceeccccccccccccceeEEecCCCceEEEEec---CCEEEEEECcCCcceee
Confidence 999999999 6999999999873 22222111 112222222233445666655 99999999999999999
Q ss_pred eecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECC-CCCEEEEEeCCCcEEEEecC
Q psy8285 377 VKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSP-DQTCVAAASADETISIWNCF 454 (507)
Q Consensus 377 ~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~~dg~i~iw~~~ 454 (507)
+..+ ..|.+++|+|++++|++ ++.||.|++||+.+++++.....+... ..+.+ ....+.+.+.++.+++|+..
T Consensus 330 ~~~~~~~v~~~~~s~~~~~l~s--~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 330 LKGHYKTVDCCVFQSNFQELYS--GSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ECCCSSCEEEEEEETTTTEEEE--EETTSCEEEEEECC------------------------------------------
T ss_pred eccCCCeEEEEEEcCCCCEEEE--ECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeecccCccCceeecCCc
Confidence 9876 78999999999999999 889999999999998887665543322 23444 33455667788999999865
Q ss_pred C
Q psy8285 455 P 455 (507)
Q Consensus 455 ~ 455 (507)
.
T Consensus 405 ~ 405 (408)
T 4a11_B 405 Q 405 (408)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-37 Score=290.23 Aligned_cols=278 Identities=16% Similarity=0.254 Sum_probs=231.0
Q ss_pred ccceeeeeeCCC----C--EEEEEcCCeEEEEECCCCceeEEEe---cCCCCCCceEEEEEccC----CCeEEEEeCCCC
Q psy8285 165 DFYTSGLDWGYH----D--TLAVALDTSVYTWNTKTNKTQLLVE---YPTYDNAYISCVAWKPR----TTDLAVTNTCTE 231 (507)
Q Consensus 165 ~~~i~~~~~s~~----~--~~~~~~~~~i~iw~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~----~~~l~~~~~~dg 231 (507)
...|.+++|+|+ . +++++.++.|++|+..+++...... ... |...|.+++|+|+ +++|+++ +.||
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~-~~dg 95 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDAD-ADENFYTCAWTYDSNTSHPLLAVA-GSRG 95 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSC-TTCCEEEEEEEECTTTCCEEEEEE-ETTC
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccC-CCCcEEEEEeccCCCCCCCEEEEe-cCCC
Confidence 446889999983 2 7777888899999999776544333 222 6688999999999 5688888 9999
Q ss_pred cEEEEeCCCceeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceee---ecCCCceEEEEEcCCCC
Q psy8285 232 YIDLWHEQEERLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAI---TREGDVVCGLKWSPNGR 305 (507)
Q Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~ 305 (507)
.|++||+.+++.+..+.+|...|.+++| ++++|++++.||.|++||+++++ ....+ ..|...|.+++|+|+++
T Consensus 96 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 174 (366)
T 3k26_A 96 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT-LVAIFGGVEGHRDEVLSADYDLLGE 174 (366)
T ss_dssp EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE-EEEEECSTTSCSSCEEEEEECTTSS
T ss_pred EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe-EEEEecccccccCceeEEEECCCCC
Confidence 9999999999999999999999999999 57899999999999999999875 34444 57999999999999999
Q ss_pred EEEEEe-CCcEEEEEcCCCCCCCCee----------------------------eecCCCCCeeEEEEccCCCcEEEEEc
Q psy8285 306 YLASGS-NNTVKIWDFRQLDAKRPQV----------------------------NNQCHLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 306 ~l~~~~-d~~i~i~d~~~~~~~~~~~----------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
+|++++ |+.|++||++++ +... ....|...|.+++|+ + .++++++
T Consensus 175 ~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~ 248 (366)
T 3k26_A 175 KIMSCGMDHSLKLWRINSK---RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKS 248 (366)
T ss_dssp EEEEEETTSCEEEEESCSH---HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEEC
T ss_pred EEEEecCCCCEEEEECCCC---ccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEe
Confidence 999999 699999999875 2222 223389999999998 4 3555655
Q ss_pred cCCCCeEEEEeCCCCCe--------------eeeeecC-CCeEEEEECCC--CCeEEEEeccCCCeEEEEeCCCcc----
Q psy8285 357 GICDQTVRLWNSMNGKE--------------KCHVKTD-SQVTSILWSEQ--YRELVTSHGKQDCSLKMWEYPRLH---- 415 (507)
Q Consensus 357 ~~~d~~i~i~d~~~~~~--------------~~~~~~~-~~i~~~~~s~~--~~~l~~~~g~~d~~i~v~d~~~~~---- 415 (507)
. |+.|++||+++++. +..+..+ ..+.+++|+|+ +++|++ ++.||.|++||+.+++
T Consensus 249 ~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~ 324 (366)
T 3k26_A 249 C--ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL--GNQVGKLYVWDLEVEDPHKA 324 (366)
T ss_dssp S--SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE--ECTTSCEEEEECCSSSGGGC
T ss_pred c--CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE--EecCCcEEEEECCCCCCccc
Confidence 4 99999999987754 4555555 67999999999 999999 8899999999999875
Q ss_pred EEEEeecc--ccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 416 LIEELKIH--QERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 416 ~~~~~~~~--~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
....+.+| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 325 ~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 325 KCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred cceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 44477777 78999999999999999999999999999853
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-36 Score=273.05 Aligned_cols=246 Identities=17% Similarity=0.332 Sum_probs=206.8
Q ss_pred cCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC--ceeEEEEeecCccEEEEEee----CCEEEEEecCCeEEEE
Q psy8285 203 YPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE--ERLIQKLRTHMHQVIAMCWN----GNLLSCGTIGGNILHY 276 (507)
Q Consensus 203 ~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~ 276 (507)
+.+ |...|.+++|+|++++|+++ +.|++|+|||+.+ .+.+..+.+|..+|.+++|. +++|++++.|++|++|
T Consensus 5 ~~~-h~~~V~~~~~s~~g~~las~-s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 5 ANA-HNEMIHDAVMDYYGKRMATC-SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp CCS-CSSCEEEEEECTTSSEEEEE-ETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred ccC-CcCceEEEEECCCCCEEEEE-eCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 455 99999999999999999999 9999999999974 46788899999999999992 7899999999999999
Q ss_pred ECCCCC-cCceeeecCCCceEEEEEcCC--CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCC----
Q psy8285 277 DVRTHS-DYPTAITREGDVVCGLKWSPN--GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWE---- 348 (507)
Q Consensus 277 d~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---- 348 (507)
|++++. .....+..|...|.+++|+|+ +.+|++++ |+.|++||++..... ....+.+|...|.+++|+|++
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT-SPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB-CCEEEECCSSCEEEEEECCCC----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce-eeeeeecccCccceEeecCCccccc
Confidence 998764 244566789999999999997 88999999 699999999875221 235667899999999999973
Q ss_pred --------CcEEEEEccCCCCeEEEEeCCCCC----eeeeeecC-CCeEEEEECCCC---CeEEEEeccCCCeEEEEeCC
Q psy8285 349 --------PTLLATGGGICDQTVRLWNSMNGK----EKCHVKTD-SQVTSILWSEQY---RELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 349 --------~~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~-~~i~~~~~s~~~---~~l~~~~g~~d~~i~v~d~~ 412 (507)
..++++++. |++|++||+++++ ....+..| ..|.+++|+|++ ++|++ ++.|+.|++||+.
T Consensus 162 ~~~~~~~~~~~l~sgs~--D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las--~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA--DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS--VSQDRTCIIWTQD 237 (297)
T ss_dssp --------CCEEEEEET--TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTSCEEEEEES
T ss_pred ccCCCCCCcceEEEEcC--CCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE--EECCCcEEEEEeC
Confidence 246666665 9999999998776 45566666 689999999995 77888 8899999999997
Q ss_pred Ccc---EEEEe--eccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 413 RLH---LIEEL--KIHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 413 ~~~---~~~~~--~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
+.. ....+ ..|...|.+++|+|++++|++++.|+.|++|+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 238 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 643 22233 46788999999999999999999999999999864
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-37 Score=295.04 Aligned_cols=276 Identities=13% Similarity=0.182 Sum_probs=227.5
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
++.++|+|++ +++++.|+.|++||..+++...... . + ..+....|+|++++|+++ +.||.|++||+.+++...
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~--~-~-~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~ 133 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK--R-A-DYTAVDTAKLQMRRFILG-TTEGDIKVLDSNFNLQRE 133 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC--S-C-CEEEEEEECSSSCEEEEE-ETTSCEEEECTTSCEEEE
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe--c-C-CceEEEEEecCCCEEEEE-ECCCCEEEEeCCCcceee
Confidence 3468899987 7788899999999998766543332 2 3 445556789999999999 999999999999999888
Q ss_pred EEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q psy8285 246 KLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQ 322 (507)
Q Consensus 246 ~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~ 322 (507)
.+..|...|.+++| ++++|++++.|+.|++||+++++ ....+.+|...|.+++|+|++++|++++ |+.|++||+++
T Consensus 134 ~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 212 (420)
T 3vl1_A 134 IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS-NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 212 (420)
T ss_dssp ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc-CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC
Confidence 88899999999999 68899999999999999999876 5677889999999999999999999999 69999999998
Q ss_pred CCCCCCeeeecC---CCCCeeEE---------------------EEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeee
Q psy8285 323 LDAKRPQVNNQC---HLSAVKAI---------------------AWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK 378 (507)
Q Consensus 323 ~~~~~~~~~~~~---~~~~v~~~---------------------~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 378 (507)
+ +.+..+.. +...+.++ +|+|++. ++++++. |+.|++||+++++.+..+.
T Consensus 213 ~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~--dg~i~i~d~~~~~~~~~~~ 286 (420)
T 3vl1_A 213 G---TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHV--SGVITVHNVFSKEQTIQLP 286 (420)
T ss_dssp T---EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEET--TSCEEEEETTTCCEEEEEC
T ss_pred C---ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcC--CCeEEEEECCCCceeEEcc
Confidence 7 55555543 34444444 4567774 4555544 9999999999998877775
Q ss_pred cC--CCeEEEEECCCCC-eEEEEeccCCCeEEEEeCCCccE-EEEeec-cccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 379 TD--SQVTSILWSEQYR-ELVTSHGKQDCSLKMWEYPRLHL-IEELKI-HQERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 379 ~~--~~i~~~~~s~~~~-~l~~~~g~~d~~i~v~d~~~~~~-~~~~~~-~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
.. ..+.+++|+|+++ +|++ |+.||.|++||+++++. +..+.. |...|.++.| +++++|++++.|+.|++|++
T Consensus 287 ~~~~~~v~~~~~~~~~~~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 287 SKFTCSCNSLTVDGNNANYIYA--GYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp CTTSSCEEEEEECSSCTTEEEE--EETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEE
T ss_pred cccCCCceeEEEeCCCCCEEEE--EeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEec
Confidence 43 6899999999999 8888 88999999999998754 677776 6677888855 57889999999999999999
Q ss_pred CCCCc
Q psy8285 454 FPRDK 458 (507)
Q Consensus 454 ~~~~~ 458 (507)
...+.
T Consensus 364 ~~~~~ 368 (420)
T 3vl1_A 364 SDPES 368 (420)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 87543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-37 Score=291.37 Aligned_cols=224 Identities=13% Similarity=0.183 Sum_probs=187.0
Q ss_pred EEEEEcCCeEEEEECCCCce-----eEEEecCCCC-----CCceEEEEEc----cCCCe-EEEEeCCCCcEEEEeCCC--
Q psy8285 178 TLAVALDTSVYTWNTKTNKT-----QLLVEYPTYD-----NAYISCVAWK----PRTTD-LAVTNTCTEYIDLWHEQE-- 240 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~-----~~~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~~dg~i~iwd~~~-- 240 (507)
+++++.|+.|++|++.+++. ..... + | ...|.+++|+ |++++ |+++ +.||.|++||+.+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDETKKVIFEKLD--L-LDSDMKKHSFWALKWGASNDRLLSHRLVAT-DVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTTCCEEEEEEC--C-SCTTGGGSCEEEEEEECCC----CEEEEEE-ETTSCEEEEEEESSS
T ss_pred EEEEcCCCCEEEEEccCCcccccccceeec--c-cccccCCCcEEEEEEeeccCCCCceEEEEE-eCCCcEEEEeCCccc
Confidence 56677999999999988774 33333 3 5 5899999999 99999 8888 8999999999998
Q ss_pred ----ceeEE-----EEe-------ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeec---C---CCceE
Q psy8285 241 ----ERLIQ-----KLR-------THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITR---E---GDVVC 296 (507)
Q Consensus 241 ----~~~~~-----~~~-------~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~---~~~v~ 296 (507)
++.+. .+. .|...+.+++| ++ .|++++.|+.|++||+++.+ ....+.. | ...|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~h~~~~~~i~ 237 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR-PLYNFESQHSMINNSNSIR 237 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE-EEEEEECCC---CCCCCEE
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc-eeEEEeccccccccCCccc
Confidence 66655 664 38889999999 57 99999999999999999865 5566777 8 89999
Q ss_pred EEEEcCCCCEEEEEe-C---CcEEEEEcCCCCCCCCeeeecC-------------CCCCeeEEEEccCCCcEEEEEccCC
Q psy8285 297 GLKWSPNGRYLASGS-N---NTVKIWDFRQLDAKRPQVNNQC-------------HLSAVKAIAWCPWEPTLLATGGGIC 359 (507)
Q Consensus 297 ~~~~~~~~~~l~~~~-d---~~i~i~d~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~~~~ 359 (507)
+++|+|++++|++++ | +.|++||++++ +.+..+.. |...|.+++|+|++..+++ ++.
T Consensus 238 ~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~-- 311 (397)
T 1sq9_A 238 SVKFSPQGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS-AGW-- 311 (397)
T ss_dssp EEEECSSTTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE-EET--
T ss_pred eEEECCCCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccCCcEEEEEECCCCCEEEE-EeC--
Confidence 999999999999998 7 89999999987 77888887 9999999999999865555 443
Q ss_pred CCeEEEEeCCCCCeeeeee------c----------------CCCeEEEEECCCC----------CeEEEEeccCCCeEE
Q psy8285 360 DQTVRLWNSMNGKEKCHVK------T----------------DSQVTSILWSEQY----------RELVTSHGKQDCSLK 407 (507)
Q Consensus 360 d~~i~i~d~~~~~~~~~~~------~----------------~~~i~~~~~s~~~----------~~l~~~~g~~d~~i~ 407 (507)
|+.|++||+++++++..+. . ...|.+++|+|++ ++|++ ++.||.|+
T Consensus 312 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s--~~~dg~i~ 389 (397)
T 1sq9_A 312 DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCC--VCLDRSIR 389 (397)
T ss_dssp TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEE--EETTTEEE
T ss_pred CCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEE--ecCCCcEE
Confidence 9999999999999998887 4 4689999999998 68888 78999999
Q ss_pred EEeCCCcc
Q psy8285 408 MWEYPRLH 415 (507)
Q Consensus 408 v~d~~~~~ 415 (507)
+||+.+++
T Consensus 390 iw~~~~g~ 397 (397)
T 1sq9_A 390 WFREAGGK 397 (397)
T ss_dssp EEEEEC--
T ss_pred EEEcCCCC
Confidence 99987753
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=297.64 Aligned_cols=241 Identities=14% Similarity=0.187 Sum_probs=182.0
Q ss_pred eeeeeeCC-CC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 168 TSGLDWGY-HD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 168 i~~~~~s~-~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
|++++|+| ++ +++++.|+.|++||++++.......... +...+.+++|+|++.+|+++ +.||.|++||+.. +.+
T Consensus 167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g-~~dg~i~~wd~~~-~~~ 243 (435)
T 4e54_B 167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDT-INIWFCSLDVSASSRMVVTG-DNVGNVILLNMDG-KEL 243 (435)
T ss_dssp CCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSS-CSCCCCCEEEETTTTEEEEE-CSSSBEEEEESSS-CBC
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCC-CCccEEEEEECCCCCEEEEE-eCCCcEeeeccCc-cee
Confidence 44566665 23 6777899999999998776555554443 56678999999999999999 9999999999864 566
Q ss_pred EEEeecCccEEEEEe--e-CCEEEEEecCCeEEEEECCCCCcC--ceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEE
Q psy8285 245 QKLRTHMHQVIAMCW--N-GNLLSCGTIGGNILHYDVRTHSDY--PTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIW 318 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~ 318 (507)
..+.+|...|.+++| + ..+|++++.|+.|++||+++.+.. .....+|...|++++|+|++++|++++ |+.|++|
T Consensus 244 ~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iw 323 (435)
T 4e54_B 244 WNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323 (435)
T ss_dssp CCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEE
T ss_pred EEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEE
Confidence 778899999999999 3 458899999999999999876532 233457899999999999999999999 7999999
Q ss_pred EcCCCCCCCCeeeecCCCC------CeeEEEEccCCCcEEEEEc---------cCCCCeEEEEeCCCCCeeeeeec-C-C
Q psy8285 319 DFRQLDAKRPQVNNQCHLS------AVKAIAWCPWEPTLLATGG---------GICDQTVRLWNSMNGKEKCHVKT-D-S 381 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~~~~~---------~~~d~~i~i~d~~~~~~~~~~~~-~-~ 381 (507)
|++++ .....+..|.. .+....|+|++..+++... +..++.|++||..+++.+..+.. + .
T Consensus 324 d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~ 400 (435)
T 4e54_B 324 SASQW---DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESS 400 (435)
T ss_dssp ESSSS---SSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCC
T ss_pred ECCCC---ccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCC
Confidence 99987 55554444432 2334566666644444321 11256899999999998887653 3 5
Q ss_pred CeEEE-EECCCCCeEEEEeccCCCeEEEEeCCCccEE
Q psy8285 382 QVTSI-LWSEQYRELVTSHGKQDCSLKMWEYPRLHLI 417 (507)
Q Consensus 382 ~i~~~-~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~ 417 (507)
.|.++ +|+|+|++|++ |+ |+.|+|||+++++..
T Consensus 401 ~v~s~~~fspdg~~las--g~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 401 GISSLNEFNPMGDTLAS--AM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CCCCEEEECTTSSCEEE--EC-SSEEEECCCC-----
T ss_pred cEEEEEEECCCCCEEEE--Ec-CCcEEEEECCcCeee
Confidence 67776 69999999988 65 789999999987653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=286.24 Aligned_cols=238 Identities=19% Similarity=0.279 Sum_probs=194.3
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee--
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL-- 243 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~-- 243 (507)
|.+++|+|++ +++++.|+.|++||+.+++........+ |...|.+++|+|++++|+++ +.|+.|++||+..++.
T Consensus 55 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~d~~v~i~d~~~~~~~~ 132 (372)
T 1k8k_C 55 VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR-INRAARCVRWAPNEKKFAVG-SGSRVISICYFEQENDWW 132 (372)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCC-CSSCEEEEEECTTSSEEEEE-ETTSSEEEEEEETTTTEE
T ss_pred ccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeec-CCCceeEEEECCCCCEEEEE-eCCCEEEEEEecCCCcce
Confidence 3445666655 6677899999999999888776666666 89999999999999999999 8999999999988763
Q ss_pred -EEEE-eecCccEEEEEe--eCCEEEEEecCCeEEEEECCC-----------------CCcCceeeecCCCceEEEEEcC
Q psy8285 244 -IQKL-RTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRT-----------------HSDYPTAITREGDVVCGLKWSP 302 (507)
Q Consensus 244 -~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~-----------------~~~~~~~~~~~~~~v~~~~~~~ 302 (507)
...+ ..|...|.+++| ++++|++++.||.|++||++. .......+..|...|.+++|+|
T Consensus 133 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 212 (372)
T 1k8k_C 133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 212 (372)
T ss_dssp EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred eeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC
Confidence 3333 468899999999 688999999999999999742 1124556668899999999999
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC--CCe------
Q psy8285 303 NGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN--GKE------ 373 (507)
Q Consensus 303 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~------ 373 (507)
++++|++++ |+.|++||++++ +.+..+..|..++.+++|+|++ .+++++. |+.|++|++.+ ++.
T Consensus 213 ~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~---d~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 213 NGSRVAWVSHDSTVCLADADKK---MAVATLASETLPLLAVTFITES-SLVAAGH---DCFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp SSSEEEEEETTTEEEEEEGGGT---TEEEEEECSSCCEEEEEEEETT-EEEEEET---TSSCEEEEEETTTTEEEECCCC
T ss_pred CCCEEEEEeCCCEEEEEECCCC---ceeEEEccCCCCeEEEEEecCC-CEEEEEe---CCeEEEEEccCcCceEEEeecc
Confidence 999999999 699999999988 7888888999999999999998 5666665 99999999987 420
Q ss_pred --------------------------e------eee-ecC-CCeEEEEEC-CCC---CeEEEEeccCCCeEEEEeCCCcc
Q psy8285 374 --------------------------K------CHV-KTD-SQVTSILWS-EQY---RELVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 374 --------------------------~------~~~-~~~-~~i~~~~~s-~~~---~~l~~~~g~~d~~i~v~d~~~~~ 415 (507)
. ..+ ..+ ..|++++|. ++| ++|++ ++.||.|++||+++++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s--~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 286 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCT--TGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEE--EETTSEEEEEEHHHHH
T ss_pred CccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEE--ecCCCceEEEEecChh
Confidence 0 222 133 689999966 666 89998 8899999999987654
Q ss_pred E
Q psy8285 416 L 416 (507)
Q Consensus 416 ~ 416 (507)
.
T Consensus 364 ~ 364 (372)
T 1k8k_C 364 S 364 (372)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-36 Score=287.77 Aligned_cols=282 Identities=16% Similarity=0.357 Sum_probs=233.1
Q ss_pred ceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 167 YTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 167 ~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
.|.++++..+.+++++.|+.|++||..+++....+. + |...|.+++| ++++|+++ +.||.|++||+.+++.+..
T Consensus 135 ~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~--~-h~~~v~~l~~--~~~~l~sg-~~dg~i~vwd~~~~~~~~~ 208 (435)
T 1p22_A 135 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT--G-HTGSVLCLQY--DERVIITG-SSDSTVRVWDVNTGEMLNT 208 (435)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEEC--C-CSSCEEEEEC--CSSEEEEE-ETTSCEEEEESSSCCEEEE
T ss_pred cEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEc--C-CCCcEEEEEE--CCCEEEEE-cCCCeEEEEECCCCcEEEE
Confidence 477788865558888999999999999888765544 4 9999999999 67899988 9999999999999999999
Q ss_pred EeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCc--eeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q psy8285 247 LRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYP--TAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQL 323 (507)
Q Consensus 247 ~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~ 323 (507)
+..|...|.+++|+++.+++++.||.|++||+++..... ..+.+|...|.+++| +++++++++ |+.|++||++++
T Consensus 209 ~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~ 286 (435)
T 1p22_A 209 LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC 286 (435)
T ss_dssp ECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC
T ss_pred EcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC
Confidence 999999999999999999999999999999999876332 567789999999999 678999998 699999999988
Q ss_pred CCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccC
Q psy8285 324 DAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQ 402 (507)
Q Consensus 324 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~ 402 (507)
+.+..+.+|...|.++.|+ + .++++++. |+.|++||+++++++..+..+ ..+.+++| ++++|++ |+.
T Consensus 287 ---~~~~~~~~~~~~v~~~~~~--~-~~l~~g~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s--g~~ 354 (435)
T 1p22_A 287 ---EFVRTLNGHKRGIACLQYR--D-RLVVSGSS--DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS--GAY 354 (435)
T ss_dssp ---CEEEEEECCSSCEEEEEEE--T-TEEEEEET--TSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEE--EET
T ss_pred ---cEEEEEcCCCCcEEEEEeC--C-CEEEEEeC--CCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEE--EeC
Confidence 7888899999999999995 3 35555554 999999999999999998876 68999999 7888998 889
Q ss_pred CCeEEEEeCCCcc---------EEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecCCCcc
Q psy8285 403 DCSLKMWEYPRLH---------LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSS 470 (507)
Q Consensus 403 d~~i~v~d~~~~~---------~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 470 (507)
||.|++||+.+++ .+..+.+|...|.+++| ++.+|++++.||.|++||+.+...........+...
T Consensus 355 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~ 429 (435)
T 1p22_A 355 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRT 429 (435)
T ss_dssp TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------------------
T ss_pred CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccc
Confidence 9999999997766 78889999999999999 788999999999999999998776655444433333
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=285.59 Aligned_cols=234 Identities=13% Similarity=0.186 Sum_probs=191.6
Q ss_pred eeeeeeCCC----C--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEcc-CCCeEEEEeCCCCcEEEEeCCC
Q psy8285 168 TSGLDWGYH----D--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKP-RTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 168 i~~~~~s~~----~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
|.+++|+|+ + +++++.|+.|++||+.+++....+. + |...|.+++|+| ++.+|+++ +.||.|++||+.+
T Consensus 72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~-~~~~i~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~ 147 (366)
T 3k26_A 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--G-HGNAINELKFHPRDPNLLLSV-SKDHALRLWNIQT 147 (366)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE--S-CCSCEEEEEECSSCTTEEEEE-ETTSCEEEEETTT
T ss_pred EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec--C-CCCcEEEEEECCCCCCEEEEE-eCCCeEEEEEeec
Confidence 445566655 3 6677899999999999888765554 4 899999999999 88899988 8999999999999
Q ss_pred ceeEEEE---eecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC---------------------------ceee
Q psy8285 241 ERLIQKL---RTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY---------------------------PTAI 288 (507)
Q Consensus 241 ~~~~~~~---~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~---------------------------~~~~ 288 (507)
++.+..+ ..|...|.+++| ++++|++++.||.|++||+++.+.. ....
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 9998888 679999999999 6889999999999999999875411 1112
Q ss_pred ecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC-----------CCCeeeecCCCCCeeEEEEccC--CCcEEEE
Q psy8285 289 TREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDA-----------KRPQVNNQCHLSAVKAIAWCPW--EPTLLAT 354 (507)
Q Consensus 289 ~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~-----------~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~ 354 (507)
..|...|.+++|+ ++++++++ |+.|++||+++... ...+..+..|...|.+++|+|+ +. ++++
T Consensus 228 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-~l~~ 304 (366)
T 3k26_A 228 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQK-MLAL 304 (366)
T ss_dssp SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSS-EEEE
T ss_pred cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCc-EEEE
Confidence 2388999999999 67899888 69999999987621 0226667789999999999999 74 5555
Q ss_pred EccCCCCeEEEEeCCCCCeee----eeecC---CCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 355 GGGICDQTVRLWNSMNGKEKC----HVKTD---SQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 355 ~~~~~d~~i~i~d~~~~~~~~----~~~~~---~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
++. |+.|++||+.++++.. .+..+ ..|.+++|+|++++|++ ++.||.|++||+.
T Consensus 305 ~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--~~~dg~i~iwd~~ 365 (366)
T 3k26_A 305 GNQ--VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIA--VCDDASIWRWDRL 365 (366)
T ss_dssp ECT--TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEE--EETTSEEEEEEC-
T ss_pred Eec--CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEE--EeCCCEEEEEEec
Confidence 554 9999999999886443 55554 68999999999999999 7899999999975
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=292.55 Aligned_cols=278 Identities=14% Similarity=0.240 Sum_probs=215.3
Q ss_pred ceeeeeeCCCC-EE-EEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce--
Q psy8285 167 YTSGLDWGYHD-TL-AVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER-- 242 (507)
Q Consensus 167 ~i~~~~~s~~~-~~-~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~-- 242 (507)
.|.+++|+|++ ++ +++.|+.|++|++.++.......+.+ |...|.+++|+|++++|+++ +.|+.|++||+.+++
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~-s~d~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSD-HDKIVTCVDWAPKSNRIVTC-SQDRNAYVYEKRPDGTW 90 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCC-CSSCEEEEEECTTTCCEEEE-ETTSSEEEC------CC
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEec-CCceEEEEEEeCCCCEEEEE-eCCCeEEEEEcCCCCce
Confidence 47889999988 44 45589999999999885455556666 99999999999999999999 899999999999877
Q ss_pred -eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc--Cceeeec-CCCceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 243 -LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD--YPTAITR-EGDVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 243 -~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
....+..|...|.+++| ++++|++++.|+.|++||+++.+. ....+.. |...|.+++|+|++++|++++ |+.|
T Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i 170 (377)
T 3dwl_C 91 KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKA 170 (377)
T ss_dssp CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCE
T ss_pred eeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEE
Confidence 66777889999999999 688999999999999999998653 3556666 999999999999999999999 6999
Q ss_pred EEEEcCCCCC---------------CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe----eee
Q psy8285 316 KIWDFRQLDA---------------KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE----KCH 376 (507)
Q Consensus 316 ~i~d~~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~----~~~ 376 (507)
++||++.... .+.+..+ .|...|.+++|+|+++.+++.+. |+.|++||+++++. +..
T Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~---d~~i~iwd~~~~~~~~~~~~~ 246 (377)
T 3dwl_C 171 YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGH---DSSVTIAYPSAPEQPPRALIT 246 (377)
T ss_dssp EEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEET---TTEEC-CEECSTTSCEEECCC
T ss_pred EEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeC---CCcEEEEECCCCCCcceeeEe
Confidence 9999963210 1234445 79999999999999976655544 99999999999987 667
Q ss_pred eecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc------------------------------EE------EE
Q psy8285 377 VKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH------------------------------LI------EE 419 (507)
Q Consensus 377 ~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~------------------------------~~------~~ 419 (507)
+..+ ..+.+++|+|++++|++ ++.++.+ +|+..... .+ ..
T Consensus 247 ~~~~~~~v~~~~~s~~~~~l~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (377)
T 3dwl_C 247 VKLSQLPLRSLLWANESAIVAA--GYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRST 323 (377)
T ss_dssp EECSSSCEEEEEEEETTEEEEE--ESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC------------
T ss_pred ecCCCCceEEEEEcCCCCEEEE--EcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccccccccc
Confidence 7766 67999999999999988 6656555 77654211 00 00
Q ss_pred e----------------eccccceeEEEECCCC-C---EEEEEeCCCcEEEEec
Q psy8285 420 L----------------KIHQERILSAVLSPDQ-T---CVAAASADETISIWNC 453 (507)
Q Consensus 420 ~----------------~~~~~~i~~~~~s~~~-~---~l~s~~~dg~i~iw~~ 453 (507)
+ ..|...|+++++.+.. . .|+|++.||.|++||+
T Consensus 324 ~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 324 FRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 1 1288999999976643 3 6999999999999985
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=272.68 Aligned_cols=280 Identities=18% Similarity=0.185 Sum_probs=229.9
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|++|.+.|++++| |++++ |++|+ .|+.|+|||+.+++....+. +...
T Consensus 14 l~~h~~~v~~~~~-~~~~~-l~s~~--~dg~v~vw~~~~~~~~~~~~~~~~~---------------------------- 61 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSK-VASVS--RDGTVRLWSKDDQWLGTVVYTGQGF---------------------------- 61 (313)
T ss_dssp ECCCSSCEEEEEE-EETTE-EEEEE--TTSEEEEEEESSSEEEEEEEECSSC----------------------------
T ss_pred hhCCCCCcEEEEe-cCCCE-EEEEE--cCCcEEEEECCCCEEEEEeecCCcc----------------------------
Confidence 6899999999999 98887 88888 89999999998887665444 3333
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 62 -------------------------------------------------------------------------------- 61 (313)
T 3odt_A 62 -------------------------------------------------------------------------------- 61 (313)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCce-eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEe
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKT-QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWH 237 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd 237 (507)
+.+++|+|++ +++++.|+.|++|++..... .....+.+ |...|.++.| ++++++++ +.||.|++||
T Consensus 62 -------v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~--~~~~l~~~-~~d~~i~~~d 130 (313)
T 3odt_A 62 -------LNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIG-HQGNVCSLSF--QDGVVISG-SWDKTAKVWK 130 (313)
T ss_dssp -------EEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECC-CSSCEEEEEE--ETTEEEEE-ETTSEEEEEE
T ss_pred -------EEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhh-cccCEEEEEe--cCCEEEEE-eCCCCEEEEc
Confidence 3345566655 66778999999999876532 22334455 8999999999 56788888 9999999999
Q ss_pred CCCceeEEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeec-CCCceEEEEEcCCCCEEEEEe-C
Q psy8285 238 EQEERLIQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITR-EGDVVCGLKWSPNGRYLASGS-N 312 (507)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-d 312 (507)
.++....+..|...+.++.| +++.+++++.|+.|++||... ....+.. |...+.+++|+|++. +++++ |
T Consensus 131 --~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~d 204 (313)
T 3odt_A 131 --EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK---VIKTFSGIHNDVVRHLAVVDDGH-FISCSND 204 (313)
T ss_dssp --TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE---EEEEECSSCSSCEEEEEEEETTE-EEEEETT
T ss_pred --CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc---eEEEEeccCcccEEEEEEcCCCe-EEEccCC
Confidence 67888889999999999998 689999999999999999432 3444555 889999999999998 66776 6
Q ss_pred CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCC
Q psy8285 313 NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQ 391 (507)
Q Consensus 313 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~ 391 (507)
+.|++||++++ +.+..+..|...|.+++|+|++ .+++.+. |+.|++||+++++++..+..+ ..+.+++|+|+
T Consensus 205 g~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~ 277 (313)
T 3odt_A 205 GLIKLVDMHTG---DVLRTYEGHESFVYCIKLLPNG-DIVSCGE---DRTVRIWSKENGSLKQVITLPAISIWSVDCMSN 277 (313)
T ss_dssp SEEEEEETTTC---CEEEEEECCSSCEEEEEECTTS-CEEEEET---TSEEEEECTTTCCEEEEEECSSSCEEEEEECTT
T ss_pred CeEEEEECCch---hhhhhhhcCCceEEEEEEecCC-CEEEEec---CCEEEEEECCCCceeEEEeccCceEEEEEEccC
Confidence 99999999987 7888888999999999999998 5655444 999999999999999988877 58999999999
Q ss_pred CCeEEEEeccCCCeEEEEeCCCccEEEEe
Q psy8285 392 YRELVTSHGKQDCSLKMWEYPRLHLIEEL 420 (507)
Q Consensus 392 ~~~l~~~~g~~d~~i~v~d~~~~~~~~~~ 420 (507)
++ +++ ++.||.|++||+.+++.+...
T Consensus 278 ~~-~~~--~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 278 GD-IIV--GSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp SC-EEE--EETTSCEEEEESCGGGCCC--
T ss_pred CC-EEE--EeCCCcEEEEeCCCCceeehh
Confidence 98 555 578999999999987665443
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=280.30 Aligned_cols=275 Identities=15% Similarity=0.198 Sum_probs=237.7
Q ss_pred eeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE
Q psy8285 168 TSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 168 i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~ 247 (507)
+.++.++++.+++++.|+.|++||+.+++....+. + |...|.+++|+|++ .++++ +.||.|++||+.+++.+..+
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~--~-h~~~V~~l~~~~~~-~l~s~-s~dg~i~vwd~~~~~~~~~~ 199 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS--G-HDGGVWALKYAHGG-ILVSG-STDRTVRVWDIKKGCCTHVF 199 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC--C-CSSCEEEEEECSTT-EEEEE-ETTSCEEEEETTTTEEEEEE
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEe--C-CCcCEEEEEEcCCC-EEEEE-eCCCCEEEEECCCCcEEEEE
Confidence 56788877668888999999999999988665544 5 99999999999988 88888 99999999999999999999
Q ss_pred eecCccEEEEEe----eCCEEEEEecCCeEEEEECCCCCcC----------------------ceeeecCCCceEEEEEc
Q psy8285 248 RTHMHQVIAMCW----NGNLLSCGTIGGNILHYDVRTHSDY----------------------PTAITREGDVVCGLKWS 301 (507)
Q Consensus 248 ~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~----------------------~~~~~~~~~~v~~~~~~ 301 (507)
.+|...|.+++| ++.++++++.|+.|++||+++.... ...+.+|...+.++ +
T Consensus 200 ~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~ 277 (464)
T 3v7d_B 200 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--S 277 (464)
T ss_dssp CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--E
T ss_pred CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--c
Confidence 999999999998 3589999999999999999876522 33566788888776 5
Q ss_pred CCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC
Q psy8285 302 PNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380 (507)
Q Consensus 302 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 380 (507)
++++++++++ |+.|++||++++ +.+..+.+|...|.+++|+|++..+++ ++. |+.|++||+++++++..+..+
T Consensus 278 ~~~~~l~~~~~d~~i~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s-g~~--dg~i~vwd~~~~~~~~~~~~h 351 (464)
T 3v7d_B 278 GHGNIVVSGSYDNTLIVWDVAQM---KCLYILSGHTDRIYSTIYDHERKRCIS-ASM--DTTIRIWDLENGELMYTLQGH 351 (464)
T ss_dssp EETTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEEETTTTEEEE-EET--TSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEEEEEeCCCeEEEEECCCC---cEEEEecCCCCCEEEEEEcCCCCEEEE-EeC--CCcEEEEECCCCcEEEEEeCC
Confidence 7789999999 699999999987 788888899999999999999865555 443 999999999999999998876
Q ss_pred -CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 381 -SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 381 -~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
..+.+++|+ ++++++ ++.||.|++||+.+++...... |...+..++|+|++++|++++ ||.|++||+.+++..
T Consensus 352 ~~~v~~~~~~--~~~l~s--~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 352 TALVGLLRLS--DKFLVS--AAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV 425 (464)
T ss_dssp SSCEEEEEEC--SSEEEE--EETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEE
T ss_pred CCcEEEEEEc--CCEEEE--EeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEE
Confidence 789999997 578888 7899999999999988766664 667788899999999999998 899999999998877
Q ss_pred cc
Q psy8285 460 RK 461 (507)
Q Consensus 460 ~~ 461 (507)
..
T Consensus 426 ~~ 427 (464)
T 3v7d_B 426 HA 427 (464)
T ss_dssp ES
T ss_pred eh
Confidence 64
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=289.90 Aligned_cols=274 Identities=16% Similarity=0.206 Sum_probs=220.0
Q ss_pred ceeeeeeCC-CC--EEEEEcCCeEEEEECCC---Ccee-EEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC
Q psy8285 167 YTSGLDWGY-HD--TLAVALDTSVYTWNTKT---NKTQ-LLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ 239 (507)
Q Consensus 167 ~i~~~~~s~-~~--~~~~~~~~~i~iw~~~~---~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~ 239 (507)
.|.+++|+| ++ +++++.|+.|++||+.+ +... ....+ + |...|.+++|+|++++|+++ +.||.|++||+.
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~l~s~-s~dg~i~vwd~~ 141 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-D-CSSTVTQITMIPNFDAFAVS-SKDGQIIVLKVN 141 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-E-CSSCEEEEEECTTSSEEEEE-ETTSEEEEEEEE
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-c-CCCCEEEEEEeCCCCEEEEE-eCCCEEEEEEec
Confidence 366777888 65 66778999999999876 4311 12222 2 88999999999999999999 999999999994
Q ss_pred ---CceeEEEEee------------cCccEEEEEe----eCCEEEEEecCCeEEEEECCCCCcCceeeec--CCCceEEE
Q psy8285 240 ---EERLIQKLRT------------HMHQVIAMCW----NGNLLSCGTIGGNILHYDVRTHSDYPTAITR--EGDVVCGL 298 (507)
Q Consensus 240 ---~~~~~~~~~~------------~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~v~~~ 298 (507)
+++....... +...+.++.+ ++.+|++++.|+.|++||+++.+ ....+.. |...|+++
T Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~h~~~v~~~ 220 (437)
T 3gre_A 142 HYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE-RLQIIENSPRHGAVSSI 220 (437)
T ss_dssp EEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC-EEEEEECCGGGCCEEEE
T ss_pred cccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe-eeEEEccCCCCCceEEE
Confidence 4444443332 4455666664 48899999999999999999876 4556666 78999999
Q ss_pred EEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeec-CCCCCeeEEEEccC---CCcEEEEEccCCCCeEEEEeCCCCCe
Q psy8285 299 KWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQ-CHLSAVKAIAWCPW---EPTLLATGGGICDQTVRLWNSMNGKE 373 (507)
Q Consensus 299 ~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~~~---~~~~~~~~~~~~d~~i~i~d~~~~~~ 373 (507)
+|+|++++|++++ |+.|++||++.+ +++..+. .|..+|.+++|+|. ...++++++. |+.|++||++++++
T Consensus 221 ~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~--dg~i~iwd~~~~~~ 295 (437)
T 3gre_A 221 CIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSS--KTFLTIWNFVKGHC 295 (437)
T ss_dssp EECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEEST--TEEEEEEETTTTEE
T ss_pred EECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceEEEEeccccCCCccEEEEEcC--CCcEEEEEcCCCcE
Confidence 9999999999999 699999999987 6777665 67889999977763 2246666665 99999999999987
Q ss_pred eeeeecC---------------------------CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec----
Q psy8285 374 KCHVKTD---------------------------SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI---- 422 (507)
Q Consensus 374 ~~~~~~~---------------------------~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~---- 422 (507)
+..+..+ ..|.+++|+ ++++|++ ++.|+.|++||+.+++.+..+.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s--~~~d~~i~~wd~~~~~~~~~~~~~~~~ 372 (437)
T 3gre_A 296 QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT--DEATSSIVMFSLNELSSSKAVISPSRF 372 (437)
T ss_dssp EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE--EGGGTEEEEEETTCGGGCEEEECC--C
T ss_pred EEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe--cCCCCeEEEEECCCcccceEEeccccc
Confidence 7766532 347888999 7788888 88999999999999887776665
Q ss_pred ---------------------------------cccceeEEEECCC--CCEEEEEeCCCcEEEEe
Q psy8285 423 ---------------------------------HQERILSAVLSPD--QTCVAAASADETISIWN 452 (507)
Q Consensus 423 ---------------------------------~~~~i~~~~~s~~--~~~l~s~~~dg~i~iw~ 452 (507)
|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 373 SDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred CceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 7889999999998 77999999999999995
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-36 Score=279.31 Aligned_cols=279 Identities=13% Similarity=0.091 Sum_probs=212.4
Q ss_pred ccceeeeeeCCCC-EEEE-Ec-------CCeEEEEECCCCce--------eEEEecCCCCCCceEEEEEccCCCeEEEE-
Q psy8285 165 DFYTSGLDWGYHD-TLAV-AL-------DTSVYTWNTKTNKT--------QLLVEYPTYDNAYISCVAWKPRTTDLAVT- 226 (507)
Q Consensus 165 ~~~i~~~~~s~~~-~~~~-~~-------~~~i~iw~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 226 (507)
.+.|.+++|+||+ ++++ |. ++.|++|++..+.. .....+.+ |...+.+++++ ++.++++
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~-~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALED-NDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCT-TSCCCCEEEEE--TTEEEEEC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccC-CCCceEEEEeC--CCEEEEEE
Confidence 4568999999998 4444 33 23599999876532 12344566 78888888775 4566654
Q ss_pred ---------eCCCCcEEEEeCCCceeE----EEEe-----ecCccEEEEEe--eCCEEEEEe--cCCeEEEEECCCCCcC
Q psy8285 227 ---------NTCTEYIDLWHEQEERLI----QKLR-----THMHQVIAMCW--NGNLLSCGT--IGGNILHYDVRTHSDY 284 (507)
Q Consensus 227 ---------~~~dg~i~iwd~~~~~~~----~~~~-----~~~~~v~~~~~--~~~~l~~~~--~dg~i~i~d~~~~~~~ 284 (507)
++.|+.+++|++...... .... .+...+.+++| ||+++++++ .|++|++||+++.+ .
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~-~ 169 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT-E 169 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE-E
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc-E
Confidence 145778999998654321 1111 23445778888 788876554 68999999999876 3
Q ss_pred ceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCe--eeecCCCCCeeEEEEccCCCcEEEEEccCCCC-
Q psy8285 285 PTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQ--VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ- 361 (507)
Q Consensus 285 ~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~- 361 (507)
...+ .|...|.+++|+|||+++++++++.+.+|+..++ ... .....|...|.+++|+|++..+++.+. |+
T Consensus 170 ~~~~-~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~---~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~---d~~ 242 (365)
T 4h5i_A 170 KFEI-ETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTG---SCIARKTDFDKNWSLSKINFIADDTVLIAASL---KKG 242 (365)
T ss_dssp EEEE-ECSSCCCEEEECTTSSEEEEECSSCEEEEETTTC---CEEEEECCCCTTEEEEEEEEEETTEEEEEEEE---SSS
T ss_pred EEEe-CCCCceEEEEEccCCceEEeccceeEEEEEeccC---cceeeeecCCCCCCEEEEEEcCCCCEEEEEec---CCc
Confidence 3333 4778899999999999999999878888888776 333 234568889999999999966655544 54
Q ss_pred ---eEEEEeCCCCCe----eeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEe-eccccceeEEEE
Q psy8285 362 ---TVRLWNSMNGKE----KCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEEL-KIHQERILSAVL 432 (507)
Q Consensus 362 ---~i~i~d~~~~~~----~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~-~~~~~~i~~~~~ 432 (507)
.+++|++..... ...+..+ ..|++++|+|+|++|++ |+.|+.|+|||+.+++++..+ .+|...|++++|
T Consensus 243 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las--gs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~f 320 (365)
T 4h5i_A 243 KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL--ASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTI 320 (365)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE--EETTSCEEEEETTTTEEEEEETTSSSSCEEEEEE
T ss_pred ceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE--EcCCCEEEEEECCCCcEEEEecCcccCCEEEEEE
Confidence 688899877653 2334444 68999999999999999 889999999999999999875 789999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 433 SPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 433 s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
+|||++|+++|.|++|+||++.+.
T Consensus 321 Spdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 321 SPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CTTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999999999999999999643
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=279.27 Aligned_cols=273 Identities=17% Similarity=0.282 Sum_probs=238.7
Q ss_pred ceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 167 YTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 167 ~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
.+.++.++.+.+++++.|+.|++||+.+++.... +.+ |...|.+++|+ ++.++++ +.||.|++||+.+++.+..
T Consensus 121 v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~--~~~-h~~~v~~~~~~--~~~l~s~-~~dg~i~vwd~~~~~~~~~ 194 (445)
T 2ovr_B 121 VITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT--LVG-HTGGVWSSQMR--DNIIISG-STDRTLKVWNAETGECIHT 194 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE--CCC-CSSCEEEEEEE--TTEEEEE-ETTSCEEEEETTTTEEEEE
T ss_pred cEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEE--EcC-CCCCEEEEEec--CCEEEEE-eCCCeEEEEECCcCcEEEE
Confidence 3567777766688889999999999998886544 445 99999999998 5688888 9999999999999999999
Q ss_pred EeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC
Q psy8285 247 LRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDA 325 (507)
Q Consensus 247 ~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~ 325 (507)
+.+|...|.++.|+++.+++++.||.|++||+++++ ....+..|...+.+++| +++++++++ |+.|++||++++
T Consensus 195 ~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~-- 269 (445)
T 2ovr_B 195 LYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ-CLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE-- 269 (445)
T ss_dssp ECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCC-EEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT--
T ss_pred ECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCc-EEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC--
Confidence 999999999999999999999999999999999876 56677889999999999 678899988 699999999987
Q ss_pred CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCC
Q psy8285 326 KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDC 404 (507)
Q Consensus 326 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~ 404 (507)
+.+..+.+|...|.++.| ++.. +++++. |+.|++||+++++++..+..+ ..+.++.+ +++++++ ++.||
T Consensus 270 -~~~~~~~~~~~~v~~~~~--~~~~-l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~--~~~dg 339 (445)
T 2ovr_B 270 -TCLHTLQGHTNRVYSLQF--DGIH-VVSGSL--DTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVS--GNADS 339 (445)
T ss_dssp -EEEEEECCCSSCEEEEEE--CSSE-EEEEET--TSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEE--EETTS
T ss_pred -cEeEEecCCCCceEEEEE--CCCE-EEEEeC--CCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEE--EeCCC
Confidence 788888899999999999 5544 445544 999999999999999888776 56777776 4678888 78999
Q ss_pred eEEEEeCCCccEEEEeec---cccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccce
Q psy8285 405 SLKMWEYPRLHLIEELKI---HQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKA 462 (507)
Q Consensus 405 ~i~v~d~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 462 (507)
.|++||+++++.+..+.. |...|.+++|+ +++|++++.||.|++||+.+++.....
T Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 340 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp CEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeee
Confidence 999999999999999886 88899999995 579999999999999999998877765
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=276.33 Aligned_cols=246 Identities=18% Similarity=0.355 Sum_probs=202.0
Q ss_pred CCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce--eEEEEeecCccEEEEEee----CCEEEEEecCCeEEEEE
Q psy8285 204 PTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER--LIQKLRTHMHQVIAMCWN----GNLLSCGTIGGNILHYD 277 (507)
Q Consensus 204 ~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d 277 (507)
.+ |.+.|++++|+|++++|+++ +.|++|++||+.+++ .+..+.+|...|.+++|. +++|++++.|++|++||
T Consensus 10 ~~-H~~~V~~v~~s~~g~~lasg-s~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 10 TS-HEDMIHDAQMDYYGTRLATC-SSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEE-ETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred cc-ccCeEEEeeEcCCCCEEEEE-eCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 34 99999999999999999999 999999999998764 467788999999999992 78999999999999999
Q ss_pred CCCCC-cCceeeecCCCceEEEEEcCC--CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCC-----
Q psy8285 278 VRTHS-DYPTAITREGDVVCGLKWSPN--GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWE----- 348 (507)
Q Consensus 278 ~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----- 348 (507)
++++. .....+.+|...|.+++|+|+ +.+|++++ |+.|++||++..........+.+|...+.+++|+|+.
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 98764 234456789999999999998 78999998 6999999998752212234566799999999999973
Q ss_pred -----------CcEEEEEccCCCCeEEEEeCCCC---CeeeeeecC-CCeEEEEECCCC----CeEEEEeccCCCeEEEE
Q psy8285 349 -----------PTLLATGGGICDQTVRLWNSMNG---KEKCHVKTD-SQVTSILWSEQY----RELVTSHGKQDCSLKMW 409 (507)
Q Consensus 349 -----------~~~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~-~~i~~~~~s~~~----~~l~~~~g~~d~~i~v~ 409 (507)
..++++++. |++|++||++.. +++..+..| ..|.+++|+|++ ++|++ ++.|+.|++|
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~--D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las--~s~D~~v~iw 243 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGC--DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS--CSQDGRVFIW 243 (316)
T ss_dssp ---CCSCCCCCCCBEECCBT--TSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEE--EETTCEEEEE
T ss_pred cccccccCccccceEEEecC--CCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEE--EcCCCeEEEE
Confidence 145666654 999999999765 355566666 689999999987 77888 8899999999
Q ss_pred eCCCcc----EEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 410 EYPRLH----LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 410 d~~~~~----~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
++.+.. ....+..|...|.+++|+|++++|++++.|+.|++|+...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 244 TCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp ECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 987631 2234567889999999999999999999999999999863
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=274.32 Aligned_cols=287 Identities=18% Similarity=0.248 Sum_probs=228.1
Q ss_pred ccceeeeeeCC-CC--EEEEEcCCeEEEEECCCCceeEEEec-----------CCCCCCceEEEEEcc-CCCeEEEEeCC
Q psy8285 165 DFYTSGLDWGY-HD--TLAVALDTSVYTWNTKTNKTQLLVEY-----------PTYDNAYISCVAWKP-RTTDLAVTNTC 229 (507)
Q Consensus 165 ~~~i~~~~~s~-~~--~~~~~~~~~i~iw~~~~~~~~~~~~~-----------~~~~~~~v~~~~~~~-~~~~l~~~~~~ 229 (507)
...|++++|+| ++ +++++.|+.|++|++.+++....... .+ |...|.+++|+| ++.+|+++ +.
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~s~-~~ 120 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDV-HRYSVETVQWYPHDTGMFTSS-SF 120 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTC-CSSCEEEEEECTTCTTCEEEE-ET
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccccccccccccc-CCCcEEEEEEccCCCcEEEEE-eC
Confidence 34588999999 76 66777999999999998765443321 23 889999999999 66788888 89
Q ss_pred CCcEEEEeCCCceeEEEEeecCccEEEEEe-----eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCC
Q psy8285 230 TEYIDLWHEQEERLIQKLRTHMHQVIAMCW-----NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNG 304 (507)
Q Consensus 230 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 304 (507)
||.|++||+.+++....+. +...+.++.+ ++.++++++.++.|++||+++++ ....+..|...|.+++|+|++
T Consensus 121 d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~~~~~~~~~v~~~~~~~~~ 198 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS-CSHILQGHRQEILAVSWSPRY 198 (408)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC-CCEEECCCCSCEEEEEECSSC
T ss_pred CCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc-eeeeecCCCCcEEEEEECCCC
Confidence 9999999999998887776 7788889888 34599999999999999999875 667788899999999999999
Q ss_pred C-EEEEEe-CCcEEEEEcCCCCCCCCeee---------------ecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEe
Q psy8285 305 R-YLASGS-NNTVKIWDFRQLDAKRPQVN---------------NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWN 367 (507)
Q Consensus 305 ~-~l~~~~-d~~i~i~d~~~~~~~~~~~~---------------~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d 367 (507)
+ ++++++ |+.|++||++... ..+.. ...|...|.+++|+|++..+++.+. |+.|++||
T Consensus 199 ~~ll~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~vwd 273 (408)
T 4a11_B 199 DYILATASADSRVKLWDVRRAS--GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT---DNRMRLWN 273 (408)
T ss_dssp TTEEEEEETTSCEEEEETTCSS--CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET---TSCEEEEE
T ss_pred CcEEEEEcCCCcEEEEECCCCC--cccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC---CCeEEEEE
Confidence 8 588888 6999999998752 12222 2568899999999999866655544 99999999
Q ss_pred CCCCCeeeeeecC------CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEE
Q psy8285 368 SMNGKEKCHVKTD------SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAA 441 (507)
Q Consensus 368 ~~~~~~~~~~~~~------~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 441 (507)
+.+++........ ..+........+..+++ ++.++.|++||+.+++++..+.+|...|++++|+|++++|++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 351 (408)
T 4a11_B 274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF--VPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYS 351 (408)
T ss_dssp TTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE--EEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred CCCCccceeccccccccccccceeEEecCCCceEEE--EecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEE
Confidence 9998766544322 12222223334455555 567899999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEecCCCCcccce
Q psy8285 442 ASADETISIWNCFPRDKKRKA 462 (507)
Q Consensus 442 ~~~dg~i~iw~~~~~~~~~~~ 462 (507)
++.||.|++|++.+.++....
T Consensus 352 ~~~dg~i~iw~~~~~~~~~~~ 372 (408)
T 4a11_B 352 GSRDCNILAWVPSLYEPVPDD 372 (408)
T ss_dssp EETTSCEEEEEECC-------
T ss_pred ECCCCeEEEEeCCCCCccCCC
Confidence 999999999999988776543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-36 Score=283.45 Aligned_cols=316 Identities=11% Similarity=0.087 Sum_probs=238.5
Q ss_pred ccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeeecCcccceeeccccccccccCCccCCceeEeecCCc
Q psy8285 4 CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRESSRSKMVNTDRYVVDRSSY 83 (507)
Q Consensus 4 gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 83 (507)
+-..+|.+|+|||||++ +||++ .|++|+ |...++++. .|...|.++.|+|++..
T Consensus 13 ~~~~~v~sv~~SpDG~~-iASas--~D~TV~--d~~~~~~l~--gh~~~v~~V~FsPdg~~------------------- 66 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTL-YLTTF--PDISIG--QPKYAKDIN--CNSKNLFHVKEFPLEFE------------------- 66 (588)
T ss_dssp CCSSSSCCEEECTTSCE-EEECS--SSEEEE--EECCCSCCS--SBGGGTEEEEEECCCCC-------------------
T ss_pred HhhccEEEEEECCCCCE-EEEEc--CCceee--cccccceec--CCCccEEEEEECCCCCc-------------------
Confidence 34688999999999996 99999 899999 766666552 38889999999987721
Q ss_pred cccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCCCcc
Q psy8285 84 DSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSII 163 (507)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (507)
..|.+... . ....+. +.
T Consensus 67 ----~~~~~~~~---------------------------------~-----------------------~~~~~~---~~ 83 (588)
T 2j04_A 67 ----NKLDFELA---------------------------------Q-----------------------QNGLLN---SQ 83 (588)
T ss_dssp ----CTTTTSCC---------------------------------C-----------------------SSCSST---TS
T ss_pred ----ceEEEEeC---------------------------------C-----------------------CceEee---cC
Confidence 11111110 0 000000 01
Q ss_pred cccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCC----CCceEEEEEccCCCeEEEEeCCCCcEEEEe
Q psy8285 164 NDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYD----NAYISCVAWKPRTTDLAVTNTCTEYIDLWH 237 (507)
Q Consensus 164 ~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd 237 (507)
..-+|.+++|||++ +++++.||.|++|+.++ ...... . + ...+.+++|+|+|++|+++ +.||+|++||
T Consensus 84 ~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~--~-~~~~~~~sv~svafSPDG~~LAsg-s~DGtVkIWd 157 (588)
T 2j04_A 84 PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD--S-KGNLSSRTYHCFEWNPIESSIVVG-NEDGELQFFS 157 (588)
T ss_dssp CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC--C-SSCSTTTCEEEEEECSSSSCEEEE-ETTSEEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc--C-CCccccccEEEEEEcCCCCEEEEE-cCCCEEEEEE
Confidence 13468899999998 66677999999999644 222222 1 2 2369999999999999999 9999999999
Q ss_pred CCCce-------eEEEE----eecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcC--ceee-ecCCCceEEEEEcCC
Q psy8285 238 EQEER-------LIQKL----RTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDY--PTAI-TREGDVVCGLKWSPN 303 (507)
Q Consensus 238 ~~~~~-------~~~~~----~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~-~~~~~~v~~~~~~~~ 303 (507)
+.+++ .+..+ .+|...|.+++|..+-+++++.|+.|++||+.+.... ...+ .+|...|.+++|+
T Consensus 158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdgLaass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-- 235 (588)
T 2j04_A 158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDVLVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-- 235 (588)
T ss_dssp CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTEEEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--
T ss_pred CCCCccccccceeeeeeecccccccccEEEEEEcCCcEEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--
Confidence 99875 35666 5677899999994222889999999999999886621 2345 4788899999999
Q ss_pred CCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEE--ccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC
Q psy8285 304 GRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAW--CPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS 381 (507)
Q Consensus 304 ~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 381 (507)
++.||++++++|++||+..+ +......+|...+..++| +|++ ..++++.+ ||+ ++|...
T Consensus 236 g~~LASa~~~tIkLWd~~~~---~~~~~~~gh~~~V~~va~~~s~d~-~~La~a~e--dG~-klw~~d------------ 296 (588)
T 2j04_A 236 DYKVVLTCPGYVHKIDLKNY---SISSLKTGSLENFHIIPLNHEKES-TILLMSNK--TSY-KVLLED------------ 296 (588)
T ss_dssp TTEEEEECSSEEEEEETTTT---EEEEEECSCCSCCCEEEETTCSSC-EEEEECSS--CEE-EEEESS------------
T ss_pred CCEEEEEeCCeEEEEECCCC---eEEEEEcCCCceEEEEEeeeCCCC-CEEEEEcC--CCC-EEEeec------------
Confidence 68999998999999999875 442333379999999999 9998 45555554 899 999976
Q ss_pred CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeC
Q psy8285 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 444 (507)
.++++|++..++. . |+.+++|+..... +..+.+ ...|.+++|||||+.+|+++.
T Consensus 297 ---~~~~spd~~l~a~--~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 297 ---ELHVTADNIIAPY--L--EKKFKKWSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp ---SEEEECCCSSHHH--H--HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred ---cEEECCCceEEEE--c--CCEEEEEECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 2669999988876 3 9999999975443 445554 677999999999999998873
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-36 Score=283.39 Aligned_cols=232 Identities=14% Similarity=0.261 Sum_probs=173.6
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCc-eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce--
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNK-TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER-- 242 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~-- 242 (507)
|.+++|+|++ +++++.|+.|++||+.+++ ......+.+ |...|.+++|+|++++|+++ +.|+.|++||+.+++
T Consensus 58 v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~ 135 (377)
T 3dwl_C 58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLR-LNRAATFVRWSPNEDKFAVG-SGARVISVCYFEQENDW 135 (377)
T ss_dssp EEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCC-CSSCEEEEECCTTSSCCEEE-ESSSCEEECCC-----C
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecc-cCCceEEEEECCCCCEEEEE-ecCCeEEEEEECCcccc
Confidence 4456777765 7777899999999999877 344455555 89999999999999999999 899999999999887
Q ss_pred -eEEEEee-cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCC-----------------cCceeeecCCCceEEEEEc
Q psy8285 243 -LIQKLRT-HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHS-----------------DYPTAITREGDVVCGLKWS 301 (507)
Q Consensus 243 -~~~~~~~-~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~-----------------~~~~~~~~~~~~v~~~~~~ 301 (507)
....+.. |...|.+++| ++++|++++.|+.|++||++... .....+ .|...|.+++|+
T Consensus 136 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s 214 (377)
T 3dwl_C 136 WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFS 214 (377)
T ss_dssp CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEEC
T ss_pred eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEEC
Confidence 4677777 9999999999 68899999999999999986322 122233 788999999999
Q ss_pred CCCCEEEEEe-CCcEEEEEcCCCCCCCC----eeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC--ee
Q psy8285 302 PNGRYLASGS-NNTVKIWDFRQLDAKRP----QVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK--EK 374 (507)
Q Consensus 302 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~ 374 (507)
|++++|++++ |+.|++||++++ .. +..+..|...|.+++|+|++ .++++++ ++.+.+|+..... ..
T Consensus 215 p~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~---~~~~~~~~~~~~~~~~~ 287 (377)
T 3dwl_C 215 PSGNALAYAGHDSSVTIAYPSAP---EQPPRALITVKLSQLPLRSLLWANES-AIVAAGY---NYSPILLQGNESGWAHT 287 (377)
T ss_dssp TTSSCEEEEETTTEEC-CEECST---TSCEEECCCEECSSSCEEEEEEEETT-EEEEEES---SSSEEEECCCC---CCS
T ss_pred CCCCEEEEEeCCCcEEEEECCCC---CCcceeeEeecCCCCceEEEEEcCCC-CEEEEEc---CCcEEEEEeCCCceEEE
Confidence 9999999999 699999999987 55 67788899999999999998 5667776 5555577765211 00
Q ss_pred ----------------------------------eeee-----------------cCCCeEEEEECCCCC----eEEEEe
Q psy8285 375 ----------------------------------CHVK-----------------TDSQVTSILWSEQYR----ELVTSH 399 (507)
Q Consensus 375 ----------------------------------~~~~-----------------~~~~i~~~~~s~~~~----~l~~~~ 399 (507)
..+. +...|+++++.+... .+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s-- 365 (377)
T 3dwl_C 288 RDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTS-- 365 (377)
T ss_dssp BCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEE--
T ss_pred eeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEe--
Confidence 0010 336789998766543 4777
Q ss_pred ccCCCeEEEEeC
Q psy8285 400 GKQDCSLKMWEY 411 (507)
Q Consensus 400 g~~d~~i~v~d~ 411 (507)
++.||.|++||+
T Consensus 366 ~g~Dg~i~iWdl 377 (377)
T 3dwl_C 366 SGTDGRVVLWTL 377 (377)
T ss_dssp EETTSEEEEECC
T ss_pred ecCCCcEEEecC
Confidence 789999999985
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=281.02 Aligned_cols=281 Identities=12% Similarity=0.214 Sum_probs=221.1
Q ss_pred cccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCce---------eEEEecCCCCC------------CceEEEEEcc
Q psy8285 162 IINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKT---------QLLVEYPTYDN------------AYISCVAWKP 218 (507)
Q Consensus 162 ~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~---------~~~~~~~~~~~------------~~v~~~~~~~ 218 (507)
+.+.-.|.+++|+|++ +++++.|+.|++|++.+++. .....+.+ |. ..|.+++|+|
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS-HEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC-CCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc-ccccccccccccccCceEEEEEcC
Confidence 3445579999999988 56667999999999987652 12334445 87 8899999999
Q ss_pred CC--CeEEEEeCCCCcEEEEeCCCceeE---------------------------------------EE-EeecCccEEE
Q psy8285 219 RT--TDLAVTNTCTEYIDLWHEQEERLI---------------------------------------QK-LRTHMHQVIA 256 (507)
Q Consensus 219 ~~--~~l~~~~~~dg~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~ 256 (507)
++ ..|+++ +.|+.|++||+.+++.. .. ..+|...|.+
T Consensus 104 ~~~~~~l~s~-s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 104 QKNAAQFLLS-TNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp CCSSSEEEEE-ECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred CCCcceEEEe-CCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 98 788888 89999999998765432 12 3579999999
Q ss_pred EEe--eCCEEEEEecCCeEEEEECCCCCcCce-------eeecCCCceEEEEEcCCC-CEEEEEe-CCcEEEEEcCCCCC
Q psy8285 257 MCW--NGNLLSCGTIGGNILHYDVRTHSDYPT-------AITREGDVVCGLKWSPNG-RYLASGS-NNTVKIWDFRQLDA 325 (507)
Q Consensus 257 ~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~~~~ 325 (507)
++| ++++|+++ .|+.|++||++....... .+..|...|.+++|+|++ ++|++++ |+.|++||++++..
T Consensus 183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 183 ISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp EEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred EEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 999 68899998 799999999985332222 356889999999999998 9999999 69999999998721
Q ss_pred -CCCeeeecCCCC------------CeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC-CCeeeeeecCCC---------
Q psy8285 326 -KRPQVNNQCHLS------------AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-GKEKCHVKTDSQ--------- 382 (507)
Q Consensus 326 -~~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~--------- 382 (507)
......+..|.. .|.+++|+|++. ++++++ ++.|++||+++ ++++..+..+..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR-YMMTRD---YLSVKVWDLNMENRPVETYQVHEYLRSKLCSLY 337 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS-EEEEEE---SSEEEEEETTCCSSCSCCEESCGGGTTTHHHHH
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCC-EEEEee---CCeEEEEeCCCCccccceeeccccccccccccc
Confidence 112677777775 899999999985 555665 59999999997 888888876643
Q ss_pred -------eEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec---------------------------------
Q psy8285 383 -------VTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI--------------------------------- 422 (507)
Q Consensus 383 -------i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~--------------------------------- 422 (507)
+..++|+|++++|++ |+.||.|++||+.+++.+. +..
T Consensus 338 ~~~~i~~~~~~~~s~~~~~l~s--~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (447)
T 3dw8_B 338 ENDCIFDKFECCWNGSDSVVMT--GSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLD 414 (447)
T ss_dssp HTSGGGCCCCEEECTTSSEEEE--ECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCC
T ss_pred cccccccceEEEECCCCCEEEE--eccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccc
Confidence 334999999999998 8899999999999887653 222
Q ss_pred cccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 423 HQERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 423 ~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
+...|..++|+|++.+|++++.++ +++|.-
T Consensus 415 ~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 415 FNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 235688999999999999998875 788864
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-35 Score=279.68 Aligned_cols=281 Identities=16% Similarity=0.209 Sum_probs=228.5
Q ss_pred eeeeeeCCCCE--EE-EEcCCeEEEEECCCCcee--EEEecCCCCCCceEEEEEcc-CCCeEEEEeCCCCcEEEEeCCCc
Q psy8285 168 TSGLDWGYHDT--LA-VALDTSVYTWNTKTNKTQ--LLVEYPTYDNAYISCVAWKP-RTTDLAVTNTCTEYIDLWHEQEE 241 (507)
Q Consensus 168 i~~~~~s~~~~--~~-~~~~~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~dg~i~iwd~~~~ 241 (507)
.+.++++|+.. ++ ++.+|.|++|++...... ....+.+ |...|.+++|+| ++++|+++ +.||.|++||+.++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p~~~~~l~s~-s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCG-HTAPVLDIAWCPHNDNVIASG-SEDCTVMVWEIPDG 114 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCC-CSSCEEEEEECTTCTTEEEEE-ETTSEEEEEECCTT
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEec-CCCCEEEEEeCCCCCCEEEEE-eCCCeEEEEEccCC
Confidence 44588888872 22 468999999998664321 2333556 999999999999 88999998 99999999999987
Q ss_pred -------eeEEEEeecCccEEEEEe--eC-CEEEEEecCCeEEEEECCCCCcCceee--ecCCCceEEEEEcCCCCEEEE
Q psy8285 242 -------RLIQKLRTHMHQVIAMCW--NG-NLLSCGTIGGNILHYDVRTHSDYPTAI--TREGDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 242 -------~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~ 309 (507)
+.+..+.+|...|.+++| ++ ++|++++.|+.|++||+++++ ....+ ..|...|.+++|+|++++|++
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 193 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDVHPDTIYSVDWSRDGALICT 193 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-EEEEECTTTCCSCEEEEEECTTSSCEEE
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-ccEEEecCCCCCceEEEEECCCCCEEEE
Confidence 567888999999999999 44 699999999999999999876 45556 679999999999999999999
Q ss_pred Ee-CCcEEEEEcCCCCCCCCeeee-cCCCCC-eeEEEEccCCCcEEEEE-ccCCCCeEEEEeCCCCCe-ee--eeecCCC
Q psy8285 310 GS-NNTVKIWDFRQLDAKRPQVNN-QCHLSA-VKAIAWCPWEPTLLATG-GGICDQTVRLWNSMNGKE-KC--HVKTDSQ 382 (507)
Q Consensus 310 ~~-d~~i~i~d~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~-~~--~~~~~~~ 382 (507)
++ |+.|++||++++ +.+..+ ..|.+. +.++.|+|++ .+++++ ..+.|+.|++||+++++. +. .+.+...
T Consensus 194 ~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 269 (402)
T 2aq5_A 194 SCRDKRVRVIEPRKG---TVVAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSG 269 (402)
T ss_dssp EETTSEEEEEETTTT---EEEEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSS
T ss_pred EecCCcEEEEeCCCC---ceeeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCc
Confidence 99 699999999987 677776 677765 8999999998 566665 111399999999998765 33 3334578
Q ss_pred eEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE-EEEeec--cccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 383 VTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL-IEELKI--HQERILSAVLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 383 i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~-~~~~~~--~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
+.+++|+|++++|+++ |+.|+.|++||+.++++ +..+.. |...|.+++|+|++.++++ .++.+++|++.+++.
T Consensus 270 v~~~~~s~~~~~l~~~-g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 270 VLLPFFDPDTNIVYLC-GKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp CEEEEEETTTTEEEEE-ETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred eeEEEEcCCCCEEEEE-EcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 9999999999999764 67899999999998874 555544 4589999999999998764 567999999987543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=287.06 Aligned_cols=284 Identities=10% Similarity=0.091 Sum_probs=209.6
Q ss_pred EEcCCeEEEEECCCCceeE--EEecCCCCCCceEEEEEccC------CCeEEEEeCCCCcEEEEeCCCcee---------
Q psy8285 181 VALDTSVYTWNTKTNKTQL--LVEYPTYDNAYISCVAWKPR------TTDLAVTNTCTEYIDLWHEQEERL--------- 243 (507)
Q Consensus 181 ~~~~~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~~dg~i~iwd~~~~~~--------- 243 (507)
++.|+.|+||++.+++... ...+.+ |.+.|.+++|+|+ +.+||++ +.||+|++||+.+++.
T Consensus 179 ~s~D~tI~iWd~~~~~~~~~~~~~l~~-~~~~V~~v~wsp~~~~~~~~~~LAs~-s~DgtvrlWd~~~~~~~~~~~~~~~ 256 (524)
T 2j04_B 179 EKHSSCIQIFKMNTSTLHCVKVQTIVH-SFGEVWDLKWHEGCHAPHLVGCLSFV-SQEGTINFLEIIDNATDVHVFKMCE 256 (524)
T ss_dssp ---CEEEEEEEEETTTCCEEEEEEEEE-CCCSEEEEEECSSCCCSSSSCEEEEE-ETTSCEEEEECCCCSSSSSEEECCC
T ss_pred CCCCceEEEEEccCCCCCceEEEEEEe-cCCcEEEEEECCCCCCCCCCceEEEE-ecCCeEEEEEcCCCccccccceeec
Confidence 3467899999998776422 222333 7788999999997 4688888 9999999999986632
Q ss_pred --EEEEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEE--EEcCCC-CEEEEEe-CCcEE
Q psy8285 244 --IQKLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGL--KWSPNG-RYLASGS-NNTVK 316 (507)
Q Consensus 244 --~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~-d~~i~ 316 (507)
...+.+|...|.+++| .+..|++|+.||+|++||++++..+...+..|...|.++ +|+|++ ++|++++ |++|+
T Consensus 257 ~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk 336 (524)
T 2j04_B 257 KPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY 336 (524)
T ss_dssp SCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred CceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence 2467789999999999 567999999999999999997755566788999999999 578887 8999999 79999
Q ss_pred EEEcCCCCCCCCeeeecCCCC--CeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCC
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLS--AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYR 393 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~ 393 (507)
+||++++ +....+.+|.. .|.+++|+|++..+ ++++. |++|++||++++.++..+..+ ..|.+++|+|+++
T Consensus 337 lWD~~~~---~~~~~~~~~~~~~~v~~v~fsp~~~~l-~s~~~--d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~ 410 (524)
T 2j04_B 337 IFNPKDI---ATTKTTVSRFRGSNLVPVVYCPQIYSY-IYSDG--ASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHP 410 (524)
T ss_dssp EECGGGH---HHHCEEEEECSCCSCCCEEEETTTTEE-EEECS--SSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCC
T ss_pred EEECCCC---CcccccccccccCcccceEeCCCcCeE-EEeCC--CCcEEEEECcccccceeeecCCCceEEEEeCCCCC
Confidence 9999986 55555555543 58899999998654 44444 999999999999987777766 7899999999999
Q ss_pred eEEEEeccCCCeEEEEeCCCccEEEEeec-----cccceeEEEECCCCCEEEEEeCCCcEEEEecC-CCCccc-ceeecC
Q psy8285 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKI-----HQERILSAVLSPDQTCVAAASADETISIWNCF-PRDKKR-KARQVG 466 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~~~~~~~~~~-----~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~-~~~~~~-~~~~~~ 466 (507)
+|++ |+.|+.|++||+... .+..+.. +...+.+++|+|+++.+. ...+ +.+|+.. ++.... ......
T Consensus 411 ~l~S--gs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~~~~~l~gh~~ 484 (524)
T 2j04_B 411 MVLA--GSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDVSKAKIDAHGI 484 (524)
T ss_dssp BCEE--EETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECCC--CCCCC-------------CCC
T ss_pred eEEE--EECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccCC--ceecccccCCcceeeecCCCc
Confidence 9999 889999999998653 2222111 112578999999998552 3222 3344332 222222 233456
Q ss_pred CCcceEEeeccC
Q psy8285 467 SGSSLEFAILKQ 478 (507)
Q Consensus 467 ~~~~~~~~~~~~ 478 (507)
.+.++.|.|+..
T Consensus 485 ~V~~Vafsp~~~ 496 (524)
T 2j04_B 485 NITCTKWNETSA 496 (524)
T ss_dssp SCCCEEECCSTT
T ss_pred eEEEEECCCCCC
Confidence 778888888653
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=260.90 Aligned_cols=303 Identities=18% Similarity=0.275 Sum_probs=236.6
Q ss_pred eEEEEECCCCceeEEEecCCCCCCceEEEEEccC-CCeEEEEeCCCCcEEEEeCCCc-----eeEEEEeecCccEEEEEe
Q psy8285 186 SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR-TTDLAVTNTCTEYIDLWHEQEE-----RLIQKLRTHMHQVIAMCW 259 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~ 259 (507)
.++++.....+.....++.| |.+.|++++|+|+ +++|+++ +.|++|+|||+.+. .+...+.+|...|.+++|
T Consensus 17 ~~~~~~~~~~~~~l~~tL~G-H~~~V~~v~~sp~~~~~l~S~-s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 17 NLYFQSMMTEQMTLRGTLKG-HNGWVTQIATTPQFPDMILSA-SRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI 94 (340)
T ss_dssp ---------CEEEEEEEECC-CSSCEEEEEECTTCTTEEEEE-ETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEE
T ss_pred cEEEEEccCCceEEEEEECC-ccCCEEEEEEeCCCCCEEEEE-cCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEE
Confidence 35555555555555566888 9999999999998 5678888 99999999998764 356778899999999999
Q ss_pred --eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCC
Q psy8285 260 --NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHL 336 (507)
Q Consensus 260 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~ 336 (507)
++++|++++.|+.|++|+..... .......+...+....+++++++|++++ |+.+++||+... ........+|.
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~--~~~~~~~~~~~ 171 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGT-TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV--CKYTVQDESHS 171 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC--EEEEECSSSCS
T ss_pred CCCCCEEEEEcccccceEEeecccc-eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCC--ceEEEEecccc
Confidence 78999999999999999998865 4556667788899999999999999999 699999998764 12344556789
Q ss_pred CCeeEEEEccCCCc-EEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc
Q psy8285 337 SAVKAIAWCPWEPT-LLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 337 ~~v~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~ 414 (507)
..+..++|++++.. ++++++. |+.|++||+++++.+..+..+ ..|.+++|+|++++|++ |+.|+.|++||+++.
T Consensus 172 ~~v~~~~~~~~~~~~~~~s~~~--d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s--~s~Dg~i~iwd~~~~ 247 (340)
T 4aow_A 172 EWVSCVRFSPNSSNPIIVSCGW--DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS--GGKDGQAMLWDLNEG 247 (340)
T ss_dssp SCEEEEEECSCSSSCEEEEEET--TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE--EETTCEEEEEETTTT
T ss_pred CcccceEEccCCCCcEEEEEcC--CCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEE--EeCCCeEEEEEeccC
Confidence 99999999987644 5555554 999999999999998888776 78999999999999999 889999999999999
Q ss_pred cEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceee----------cCCCcceEEeeccCccccce
Q psy8285 415 HLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQ----------VGSGSSLEFAILKQPVSLTA 484 (507)
Q Consensus 415 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~ 484 (507)
+++..+.. ...|..+.|+|++.+ ++++.|+.|++||+.+......... ...+.++.|.+ ++
T Consensus 248 ~~~~~~~~-~~~v~~~~~~~~~~~-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-------dg 318 (340)
T 4aow_A 248 KHLYTLDG-GDIINALCFSPNRYW-LCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-------DG 318 (340)
T ss_dssp EEEEEEEC-SSCEEEEEECSSSSE-EEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-------TS
T ss_pred ceeeeecC-CceEEeeecCCCCce-eeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-------CC
Confidence 99988875 467999999998765 5566799999999987765544321 22333444444 34
Q ss_pred eeeecccccccceeEEeeeccc
Q psy8285 485 LLRSRAVEKQQHAIAYTVFGEA 506 (507)
Q Consensus 485 ~~~~~~~~~~~~~i~~~~~g~~ 506 (507)
...+.+..+..+.+.-+++|++
T Consensus 319 ~~l~sgs~Dg~v~iW~~~tGtr 340 (340)
T 4aow_A 319 QTLFAGYTDNLVRVWQVTIGTR 340 (340)
T ss_dssp SEEEEEETTSCEEEEEEEC---
T ss_pred CEEEEEeCCCEEEEEeCCCcCC
Confidence 4556677788888888888875
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=264.63 Aligned_cols=252 Identities=16% Similarity=0.320 Sum_probs=211.3
Q ss_pred CCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc----eeEEEEeecCccEEEEEe----eCCEEEEEecCCeEEE
Q psy8285 204 PTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE----RLIQKLRTHMHQVIAMCW----NGNLLSCGTIGGNILH 275 (507)
Q Consensus 204 ~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i 275 (507)
.+ |.+.|++++|+|++++|+++ +.||.|++||+.++ +....+.+|...|.+++| ++++|++++.||.|++
T Consensus 8 ~g-H~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v 85 (351)
T 3f3f_A 8 SG-HDDLVHDVVYDFYGRHVATC-SSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL 85 (351)
T ss_dssp CC-CSSCEEEEEECSSSSEEEEE-ETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred cc-cccceeEEEEcCCCCEEEEe-eCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence 44 99999999999999999999 99999999999876 467778899999999999 3789999999999999
Q ss_pred EECCCCC--------cCceeeecCCCceEEEEEcCC--CCEEEEEe-CCcEEEEEcCCCCCCCCee----------eecC
Q psy8285 276 YDVRTHS--------DYPTAITREGDVVCGLKWSPN--GRYLASGS-NNTVKIWDFRQLDAKRPQV----------NNQC 334 (507)
Q Consensus 276 ~d~~~~~--------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~----------~~~~ 334 (507)
||++.+. .....+..|...|.+++|+|+ ++++++++ |+.|++||++++....... ....
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN 165 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC
Confidence 9998764 235566789999999999999 99999998 6999999999873322221 1125
Q ss_pred CCCCeeEEEEccC---CCcEEEEEccCCCCeEEEEeCCCCCe--eeeeecC-CCeEEEEECCCC----CeEEEEeccCCC
Q psy8285 335 HLSAVKAIAWCPW---EPTLLATGGGICDQTVRLWNSMNGKE--KCHVKTD-SQVTSILWSEQY----RELVTSHGKQDC 404 (507)
Q Consensus 335 ~~~~v~~~~~~~~---~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~-~~i~~~~~s~~~----~~l~~~~g~~d~ 404 (507)
|...+.+++|+|+ + .++++++. ++.+.+|+...++. +..+..+ ..|.+++|+|++ ++|++ ++.||
T Consensus 166 ~~~~~~~~~~~p~~~~~-~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s--~~~dg 240 (351)
T 3f3f_A 166 HLQSDFCLSWCPSRFSP-EKLAVSAL--EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT--GCKDG 240 (351)
T ss_dssp CSCCCEEEEECCCSSSC-CEEEEEET--TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE--EETTS
T ss_pred cccceeEEEeccCCCCC-cEEEEecC--CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE--EcCCC
Confidence 7889999999997 5 45555554 89998888877765 4555554 689999999998 78888 88999
Q ss_pred eEEEEeCCCc----------------------------------------------cEEEEeeccccceeEEEECCCCCE
Q psy8285 405 SLKMWEYPRL----------------------------------------------HLIEELKIHQERILSAVLSPDQTC 438 (507)
Q Consensus 405 ~i~v~d~~~~----------------------------------------------~~~~~~~~~~~~i~~~~~s~~~~~ 438 (507)
.|++||++++ +.+..+.+|...|++++|+|++++
T Consensus 241 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 320 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTI 320 (351)
T ss_dssp CEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCC
T ss_pred eEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCE
Confidence 9999999764 667778889999999999999999
Q ss_pred EEEEeCCCcEEEEecCCCCcccce
Q psy8285 439 VAAASADETISIWNCFPRDKKRKA 462 (507)
Q Consensus 439 l~s~~~dg~i~iw~~~~~~~~~~~ 462 (507)
|++++.||.|++|++.+++....+
T Consensus 321 l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 321 LSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEecCCCcEEEEecCcCcchhhe
Confidence 999999999999999987765543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=262.42 Aligned_cols=271 Identities=14% Similarity=0.131 Sum_probs=226.3
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCc----eeEEEecCCCCCCceEEEEEccCCC-eEEEEeCCCCcEEEEe
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNK----TQLLVEYPTYDNAYISCVAWKPRTT-DLAVTNTCTEYIDLWH 237 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~dg~i~iwd 237 (507)
...|.+++|+|++ +++++.|+.|++|++.+++ ..... + |...|.+++|+|+++ +|+++ +.||.|++||
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~l~~~-~~dg~i~~wd 85 (342)
T 1yfq_A 11 KDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL---R-YKHPLLCCNFIDNTDLQIYVG-TVQGEILKVD 85 (342)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE---E-CSSCEEEEEEEESSSEEEEEE-ETTSCEEEEC
T ss_pred CCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee---e-cCCceEEEEECCCCCcEEEEE-cCCCeEEEEE
Confidence 3458899999987 6677799999999998877 33222 3 889999999999999 89998 8999999999
Q ss_pred C-CCceeEEEEee--cCccEEEEEee-CCEEEEEecCCeEEEEECCC---------CCcCceeeecCCCceEEEEEcCCC
Q psy8285 238 E-QEERLIQKLRT--HMHQVIAMCWN-GNLLSCGTIGGNILHYDVRT---------HSDYPTAITREGDVVCGLKWSPNG 304 (507)
Q Consensus 238 ~-~~~~~~~~~~~--~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~~v~~~~~~~~~ 304 (507)
+ .+++. ..+.. |...|.+++|. ++.|++++.|+.|++||+++ .+ +...+. |...+.+++|+|++
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~-~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL-NSNNTK-VKNKIFTMDTNSSR 162 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES-CSSSSS-SCCCEEEEEECSSE
T ss_pred eccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCC-eeeEEe-eCCceEEEEecCCc
Confidence 9 77654 67778 99999999996 89999999999999999986 44 333343 88899999999987
Q ss_pred CEEEEEe-CCcEEEEEcCC-CCCCCCeeeecCCCCCeeEEEEcc-CCCcEEEEEccCCCCeEEEEeCCCC------Ceee
Q psy8285 305 RYLASGS-NNTVKIWDFRQ-LDAKRPQVNNQCHLSAVKAIAWCP-WEPTLLATGGGICDQTVRLWNSMNG------KEKC 375 (507)
Q Consensus 305 ~~l~~~~-d~~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~d~~i~i~d~~~~------~~~~ 375 (507)
+++++ ++.|++||++. +.. ........|...+.+++|+| ++..+++ ++. |+.|++|+++.. +...
T Consensus 163 --l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~l~~-~~~--dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 163 --LIVGMNNSQVQWFRLPLCEDD-NGTIEESGLKYQIRDVALLPKEQEGYAC-SSI--DGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp --EEEEESTTEEEEEESSCCTTC-CCEEEECSCSSCEEEEEECSGGGCEEEE-EET--TSEEEEEECCTTCCSTTCTTCE
T ss_pred --EEEEeCCCeEEEEECCccccc-cceeeecCCCCceeEEEECCCCCCEEEE-Eec--CCcEEEEEEcCCCcccccccce
Confidence 66666 69999999987 421 23334456888999999999 8865554 443 999999999887 6677
Q ss_pred eeecC-C---------CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc-ccceeEEEECCCCCEEEEEeC
Q psy8285 376 HVKTD-S---------QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH-QERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 376 ~~~~~-~---------~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~s~~~ 444 (507)
.+..+ . .+.+++|+|++++|++ ++.||.|++||+.+++.+..+.+| ...|.+++ |++++|++++.
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~ 312 (342)
T 1yfq_A 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT--AGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATS 312 (342)
T ss_dssp EEECCCCCTTCCSSCCCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEE
T ss_pred eeecccccccccccceeEEEEEEcCCCCEEEE--ecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEec
Confidence 77655 2 8999999999999999 789999999999999999999998 99999999 99999999999
Q ss_pred CCc-EEEEec
Q psy8285 445 DET-ISIWNC 453 (507)
Q Consensus 445 dg~-i~iw~~ 453 (507)
||. .+.|..
T Consensus 313 Dg~~~~~~~~ 322 (342)
T 1yfq_A 313 DDTFKTNAAI 322 (342)
T ss_dssp CTHHHHCSSS
T ss_pred CCcccccccc
Confidence 998 555553
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=268.41 Aligned_cols=252 Identities=17% Similarity=0.292 Sum_probs=198.2
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-eeE
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE-RLI 244 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~-~~~ 244 (507)
|++++|+|++ +++++.|+.|++||+.+++..... .+ |...+.++.++ +..|+++ +.|+.+++||.... ..+
T Consensus 150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~--~~-h~~~v~~~s~~--~~~l~sg-s~d~~i~~~d~~~~~~~~ 223 (420)
T 4gga_A 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM--TS-HSARVGSLSWN--SYILSSG-SRSGHIHHHDVRVAEHHV 223 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--CC-CSSCEEEEEEE--TTEEEEE-ETTSEEEEEETTSSSCEE
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE--eC-CCCceEEEeeC--CCEEEEE-eCCCceeEeeecccceee
Confidence 5567777776 666789999999999998876554 44 89999998875 5688888 99999999998864 456
Q ss_pred EEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc---CceeeecCCCceEEEEEcCCC-CEEEEEe---CCcE
Q psy8285 245 QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD---YPTAITREGDVVCGLKWSPNG-RYLASGS---NNTV 315 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~~~~---d~~i 315 (507)
..+.+|...+..+.| ++.++++++.|+.+++|+...++. .......|...|.+++|+|++ .++++++ |+.|
T Consensus 224 ~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I 303 (420)
T 4gga_A 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303 (420)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEE
T ss_pred EEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEE
Confidence 778899999999999 789999999999999999987652 345667889999999999965 4555543 6999
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCe
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRE 394 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~ 394 (507)
++||++++ .....+. +...+.++.|+|++..++++++ ..|+.|++||+.+++++..+.+| ..|.+++|+|+|++
T Consensus 304 ~iwd~~t~---~~~~~~~-~~~~v~~~~~~~~~~~lv~~sg-~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~ 378 (420)
T 4gga_A 304 RIWNVCSG---ACLSAVD-AHSQVCSILWSPHYKELISGHG-FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 378 (420)
T ss_dssp EEEETTTT---EEEEEEE-CSSCEEEEEEETTTTEEEEEEC-TTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred EEEeCCcc---ccceeec-cccceeeeeecCCCCeEEEEEe-cCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 99999987 6666666 4567899999999977766543 35899999999999999999887 78999999999999
Q ss_pred EEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEE
Q psy8285 395 LVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVL 432 (507)
Q Consensus 395 l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 432 (507)
|++ |+.|++|+|||+....+......+...+....+
T Consensus 379 l~S--~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 379 VAS--AAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp EEE--EETTTEEEEECCSCSSCC---------------
T ss_pred EEE--EecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 999 889999999999877666665555544433333
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=269.83 Aligned_cols=224 Identities=9% Similarity=0.053 Sum_probs=174.3
Q ss_pred EcCCeEEEEECCCCcee-E-E--Ee---cCCCCCCceEEEEEccCCCeEEEE-eCCCCcEEEEeCCCceeEEEEeecCcc
Q psy8285 182 ALDTSVYTWNTKTNKTQ-L-L--VE---YPTYDNAYISCVAWKPRTTDLAVT-NTCTEYIDLWHEQEERLIQKLRTHMHQ 253 (507)
Q Consensus 182 ~~~~~i~iw~~~~~~~~-~-~--~~---~~~~~~~~v~~~~~~~~~~~l~~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~ 253 (507)
+.|+.+++|++...+.. . . .. ... +...+.+++|+|||++++++ ++.|++|+|||+.+++.+..+. |...
T Consensus 101 ~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~ 178 (365)
T 4h5i_A 101 KGNKHLRKFKYDKVNDQLEFLTSVDFDASTN-ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGE 178 (365)
T ss_dssp SCCCCEEEEEEETTTTEEEEEEEECSSCCCC-TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSC
T ss_pred cCCCcEEEEEecCCCceEEEeeeeceeecCC-cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCc
Confidence 35778999987654321 1 1 11 112 45668999999999998765 2578999999999999988876 7788
Q ss_pred EEEEEe--eCCEEEEEecCCeEEEEECCCCCcC-ceeeecCCCceEEEEEcCCCCEEEEEe-CC----cEEEEEcCCCCC
Q psy8285 254 VIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY-PTAITREGDVVCGLKWSPNGRYLASGS-NN----TVKIWDFRQLDA 325 (507)
Q Consensus 254 v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~----~i~i~d~~~~~~ 325 (507)
|.+++| +++++++++.+ .+.+|+..++... ......|...|.+++|+|+++++++++ ++ .+++|++.....
T Consensus 179 V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~ 257 (365)
T 4h5i_A 179 VKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNT 257 (365)
T ss_dssp CCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEE
T ss_pred eEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccccccee
Confidence 999999 78999998855 5666666655432 234456888999999999999999988 54 578888876411
Q ss_pred -CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeee-ecC-CCeEEEEECCCCCeEEEEeccC
Q psy8285 326 -KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHV-KTD-SQVTSILWSEQYRELVTSHGKQ 402 (507)
Q Consensus 326 -~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-~~~-~~i~~~~~s~~~~~l~~~~g~~ 402 (507)
......+.+|...|++++|+|+|+ ++++++. |++|+|||+++++++..+ ..| ..|++++|+|||++|++ ++.
T Consensus 258 ~~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs~--D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS--~S~ 332 (365)
T 4h5i_A 258 SVLRSKQVTNRFKGITSMDVDMKGE-LAVLASN--DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVAS--VSA 332 (365)
T ss_dssp EEEEEEEEESSCSCEEEEEECTTSC-EEEEEET--TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEE--EET
T ss_pred cceeeeeecCCCCCeEeEEECCCCC-ceEEEcC--CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEE--EeC
Confidence 112345677999999999999995 5566654 999999999999998875 455 78999999999999999 889
Q ss_pred CCeEEEEeCCC
Q psy8285 403 DCSLKMWEYPR 413 (507)
Q Consensus 403 d~~i~v~d~~~ 413 (507)
|++|+|||++.
T Consensus 333 D~tvrvw~ip~ 343 (365)
T 4h5i_A 333 ANTIHIIKLPL 343 (365)
T ss_dssp TSEEEEEECCT
T ss_pred CCeEEEEEcCC
Confidence 99999999964
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=269.02 Aligned_cols=240 Identities=18% Similarity=0.308 Sum_probs=195.0
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC-CceeE
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ-EERLI 244 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~-~~~~~ 244 (507)
|.+++|+|++ +++++.|+.|++||+.+++....+. + |...|.+++|+ +..++++ +.||.|++||+. ....+
T Consensus 137 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~-~~~~v~~~~~~--~~~l~~~-~~dg~i~i~d~~~~~~~~ 210 (401)
T 4aez_A 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA--G-HQARVGCLSWN--RHVLSSG-SRSGAIHHHDVRIANHQI 210 (401)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC--C-CSSCEEEEEEE--TTEEEEE-ETTSEEEEEETTSSSCEE
T ss_pred EEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec--C-CCCceEEEEEC--CCEEEEE-cCCCCEEEEecccCccee
Confidence 4567777776 5666789999999999888665554 4 89999999994 5688888 999999999998 56778
Q ss_pred EEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCC-CEEEEEe---CCcEEEE
Q psy8285 245 QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNG-RYLASGS---NNTVKIW 318 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~---d~~i~i~ 318 (507)
..+..|...|.+++| ++++|++++.|+.|++||+++.. ....+..|...|.+++|+|++ .++++++ |+.|++|
T Consensus 211 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 211 GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSI-PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSS-EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred eEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCC-ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 888899999999999 68899999999999999999865 556677899999999999976 5666664 6999999
Q ss_pred EcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeee--eecC-CCeEEEEECCCCCeE
Q psy8285 319 DFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH--VKTD-SQVTSILWSEQYREL 395 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~--~~~~-~~i~~~~~s~~~~~l 395 (507)
|++++ +.+..+. +...+.+++|+|++..++++++ ..|+.|++||+.+++.... +..+ ..+.+++|+|++++|
T Consensus 290 d~~~~---~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g-~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 364 (401)
T 4aez_A 290 NAATG---ARVNTVD-AGSQVTSLIWSPHSKEIMSTHG-FPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRIL 364 (401)
T ss_dssp ETTTC---CEEEEEE-CSSCEEEEEECSSSSEEEEEEC-TTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEE
T ss_pred ECCCC---CEEEEEe-CCCcEEEEEECCCCCeEEEEee-cCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEE
Confidence 99987 6666665 6788999999999976666542 3499999999998765554 4444 689999999999999
Q ss_pred EEEeccCCCeEEEEeCCCccEEEEee
Q psy8285 396 VTSHGKQDCSLKMWEYPRLHLIEELK 421 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d~~~~~~~~~~~ 421 (507)
++ ++.||.|++||+.+++.+....
T Consensus 365 ~s--~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 365 ST--AASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp EE--ECTTSEEEEEECCC--------
T ss_pred EE--EeCCCcEEEEECCCCccccccc
Confidence 99 7899999999999988776543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=256.42 Aligned_cols=242 Identities=19% Similarity=0.331 Sum_probs=197.8
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccC--CCeEEEEeCCCCcEEEEeCCC
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR--TTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~dg~i~iwd~~~ 240 (507)
...|.+++|+|++ +++++.|+.|++|++.+........+.+ |.++|.+++|+|+ +++|+++ +.|++|++||+.+
T Consensus 9 ~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~g-H~~~V~~v~~s~~~~g~~l~s~-s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASC-SYDGKVMIWKEEN 86 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECC-CSSCEEEEEECCGGGCSEEEEE-ETTTEEEEEEBSS
T ss_pred cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEcc-ccCCeEEEEecCCCcCCEEEEE-cCCCEEEEEEcCC
Confidence 3458899999987 6677899999999997654344455666 9999999999864 7889998 9999999999988
Q ss_pred ce--eEEEEeecCccEEEEEe--e--CCEEEEEecCCeEEEEECCCCCc-CceeeecCCCceEEEEEcCC----------
Q psy8285 241 ER--LIQKLRTHMHQVIAMCW--N--GNLLSCGTIGGNILHYDVRTHSD-YPTAITREGDVVCGLKWSPN---------- 303 (507)
Q Consensus 241 ~~--~~~~~~~~~~~v~~~~~--~--~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~---------- 303 (507)
++ .+..+..|...|.+++| + +.+|++++.|+.|++||++.... ....+..|...|.+++|+|+
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 166 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---------
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCC
Confidence 74 56677889999999999 3 78999999999999999987632 24567889999999999997
Q ss_pred ---CCEEEEEe-CCcEEEEEcCCCCCC-CCeeeecCCCCCeeEEEEccCC--CcEEEEEccCCCCeEEEEeCCCCCe---
Q psy8285 304 ---GRYLASGS-NNTVKIWDFRQLDAK-RPQVNNQCHLSAVKAIAWCPWE--PTLLATGGGICDQTVRLWNSMNGKE--- 373 (507)
Q Consensus 304 ---~~~l~~~~-d~~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~--- 373 (507)
+++|++++ |+.|++||++.+... .....+.+|...|.+++|+|++ ..++++++. |++|++||+++...
T Consensus 167 ~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~--D~~v~iWd~~~~~~~~~ 244 (297)
T 2pm7_B 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ--DRTCIIWTQDNEQGPWK 244 (297)
T ss_dssp ---CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET--TSCEEEEEESSTTSCCE
T ss_pred CCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC--CCcEEEEEeCCCCCccc
Confidence 57899998 799999999876211 1456778899999999999986 467777765 99999999977531
Q ss_pred eeee---ecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 374 KCHV---KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 374 ~~~~---~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
...+ .+...+.+++|+|++++|++ ++.|+.|++|+..
T Consensus 245 ~~~~~~~~~~~~v~~~~~s~~g~~las--~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 245 KTLLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKEN 284 (297)
T ss_dssp EEESSSSCCSSCEEEEEECSSSCCEEE--EETTSCEEEEEEC
T ss_pred eeeeecccCCCcEEEEEECCCCCEEEE--EcCCCcEEEEEEC
Confidence 1222 22367999999999999999 7889999999976
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=278.66 Aligned_cols=245 Identities=12% Similarity=0.192 Sum_probs=204.7
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce-----------eEEEEeecC------------ccEEEEEe--eC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER-----------LIQKLRTHM------------HQVIAMCW--NG 261 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~------------~~v~~~~~--~~ 261 (507)
+.+.|++++|+|++++|+++ +.||.|+|||+.+++ ....+.+|. ..|.+++| ++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATG-DKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEE-ETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred ccCcEEEEEECCCCCEEEEE-cCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 57899999999999999999 999999999998876 577888998 88999999 44
Q ss_pred --CEEEEEecCCeEEEEECCCCCcC--------------------------------------c-eeeecCCCceEEEEE
Q psy8285 262 --NLLSCGTIGGNILHYDVRTHSDY--------------------------------------P-TAITREGDVVCGLKW 300 (507)
Q Consensus 262 --~~l~~~~~dg~i~i~d~~~~~~~--------------------------------------~-~~~~~~~~~v~~~~~ 300 (507)
..|++++.|+.|++||+.+.... . ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 68999999999999998753210 0 113579999999999
Q ss_pred cCCCCEEEEEeCCcEEEEEcCCCCCCCCee-------eecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe
Q psy8285 301 SPNGRYLASGSNNTVKIWDFRQLDAKRPQV-------NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE 373 (507)
Q Consensus 301 ~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 373 (507)
+|++++|+++.|+.|++||++... ..+. .+.+|...|.+++|+|++..++++++. |+.|++||+++++.
T Consensus 186 ~~~~~~l~s~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~--dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 186 NSDYETYLSADDLRINLWHLEITD--RSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS--KGTIRLCDMRASAL 261 (447)
T ss_dssp CTTSSEEEEECSSEEEEEETTEEE--EEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET--TSCEEEEETTTCSS
T ss_pred cCCCCEEEEeCCCeEEEEECCCCC--ceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC--CCeEEEEECcCCcc
Confidence 999999999977999999998431 2222 356799999999999998566666665 99999999999886
Q ss_pred ----eeeeecCC-------------CeEEEEECCCCCeEEEEeccCCCeEEEEeCCC-ccEEEEeeccccc---------
Q psy8285 374 ----KCHVKTDS-------------QVTSILWSEQYRELVTSHGKQDCSLKMWEYPR-LHLIEELKIHQER--------- 426 (507)
Q Consensus 374 ----~~~~~~~~-------------~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~-~~~~~~~~~~~~~--------- 426 (507)
...+..+. .+.+++|+|++++|++ ++. +.|++||+++ ++++..+.+|...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (447)
T 3dw8_B 262 CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT--RDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE 338 (447)
T ss_dssp SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE--EES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE--eeC-CeEEEEeCCCCccccceeecccccccccccccc
Confidence 66776663 8999999999999998 666 9999999997 8888888888642
Q ss_pred ------eeEEEECCCCCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 427 ------ILSAVLSPDQTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 427 ------i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
+..++|+|++++|++++.||.|++||+.+++..
T Consensus 339 ~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 339 NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp TSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 234999999999999999999999999987764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=271.93 Aligned_cols=242 Identities=13% Similarity=0.224 Sum_probs=186.2
Q ss_pred eeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE---EE
Q psy8285 170 GLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI---QK 246 (507)
Q Consensus 170 ~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~---~~ 246 (507)
+++|.++.+++++.||.|++||+.+++...... + |...|.+++|++ ..++++ +.||.|++||+.+++.. ..
T Consensus 178 ~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~--~-h~~~v~~l~~~~--~~l~s~-s~dg~i~vwd~~~~~~~~~~~~ 251 (435)
T 1p22_A 178 CLQYDERVIITGSSDSTVRVWDVNTGEMLNTLI--H-HCEAVLHLRFNN--GMMVTC-SKDRSIAVWDMASPTDITLRRV 251 (435)
T ss_dssp EEECCSSEEEEEETTSCEEEEESSSCCEEEEEC--C-CCSCEEEEECCT--TEEEEE-ETTSCEEEEECSSSSCCEEEEE
T ss_pred EEEECCCEEEEEcCCCeEEEEECCCCcEEEEEc--C-CCCcEEEEEEcC--CEEEEe-eCCCcEEEEeCCCCCCceeeeE
Confidence 344433337788899999999999988765544 4 899999999974 588888 99999999999987655 66
Q ss_pred EeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC
Q psy8285 247 LRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDA 325 (507)
Q Consensus 247 ~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~ 325 (507)
+.+|...|.+++|+++++++++.||.|++||+++++ ....+..|...|.++.|+ ++++++++ |+.|++||++++
T Consensus 252 ~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~-- 326 (435)
T 1p22_A 252 LVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG-- 326 (435)
T ss_dssp ECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC--
T ss_pred ecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCc-EEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC--
Confidence 778999999999999999999999999999999876 567788899999999994 67899988 699999999988
Q ss_pred CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC---------eeeeeecC-CCeEEEEECCCCCeE
Q psy8285 326 KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK---------EKCHVKTD-SQVTSILWSEQYREL 395 (507)
Q Consensus 326 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---------~~~~~~~~-~~i~~~~~s~~~~~l 395 (507)
+.+..+.+|...|.+++| ++ .++++++. |+.|++||+.+++ ++..+..+ ..|.+++| ++++|
T Consensus 327 -~~~~~~~~h~~~v~~~~~--~~-~~l~sg~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l 398 (435)
T 1p22_A 327 -ACLRVLEGHEELVRCIRF--DN-KRIVSGAY--DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQI 398 (435)
T ss_dssp -CEEEEECCCSSCEEEEEC--CS-SEEEEEET--TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCE
T ss_pred -CEEEEEeCCcCcEEEEEe--cC-CEEEEEeC--CCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEE
Confidence 888899999999999999 45 45555554 9999999997665 66677666 68999999 78889
Q ss_pred EEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEEC
Q psy8285 396 VTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLS 433 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s 433 (507)
++ ++.||.|++||+.+........ ...+...+.|.
T Consensus 399 ~s--~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 433 (435)
T 1p22_A 399 VS--SSHDDTILIWDFLNDPAAQAEP-PRSPSRTYTYI 433 (435)
T ss_dssp EE--CCSSSEEEEEC-----------------------
T ss_pred EE--EeCCCEEEEEECCCCCCcccCC-CCCCccceeee
Confidence 98 8899999999998876554433 23344555554
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-35 Score=281.38 Aligned_cols=232 Identities=14% Similarity=0.145 Sum_probs=182.3
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECC---CCceeEEEe--------cCC-CCCCceEEEE--EccCCCeEEEEeCCCC
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTK---TNKTQLLVE--------YPT-YDNAYISCVA--WKPRTTDLAVTNTCTE 231 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~---~~~~~~~~~--------~~~-~~~~~v~~~~--~~~~~~~l~~~~~~dg 231 (507)
|.+++|+|++ +++++.|+.|++||+. +++...... +.. .+...+.++. +++++.+|+++ +.||
T Consensus 114 v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~d~ 192 (437)
T 3gre_A 114 VTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL-TNLS 192 (437)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE-ETTS
T ss_pred EEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE-eCCC
Confidence 5567888865 6777899999999994 444333221 110 0345677777 56788899998 9999
Q ss_pred cEEEEeCCCceeEEEEee--cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeee-cCCCceEEEEEcC----
Q psy8285 232 YIDLWHEQEERLIQKLRT--HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAIT-REGDVVCGLKWSP---- 302 (507)
Q Consensus 232 ~i~iwd~~~~~~~~~~~~--~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~---- 302 (507)
.|++||+.+++.+..+.. |...|.+++| ++++|++++.||.|++||+++++ ....+. .|...|.+++|+|
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~s~ 271 (437)
T 3gre_A 193 RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNV-LIRSWSFGDHAPITHVEVCQFYGK 271 (437)
T ss_dssp EEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTE-EEEEEBCTTCEEEEEEEECTTTCT
T ss_pred eEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCcc-EEEEEecCCCCceEEEEeccccCC
Confidence 999999999999999988 8999999999 78999999999999999999865 444443 7788999996654
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecC--------------------------CCCCeeEEEEccCCCcEEEEE
Q psy8285 303 NGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQC--------------------------HLSAVKAIAWCPWEPTLLATG 355 (507)
Q Consensus 303 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~--------------------------~~~~v~~~~~~~~~~~~~~~~ 355 (507)
++++|++++ |+.|++||++++ +.+..+.+ |...|++++|+ ++ .+++++
T Consensus 272 ~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~ 346 (437)
T 3gre_A 272 NSVIVVGGSSKTFLTIWNFVKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTD 346 (437)
T ss_dssp TEEEEEEESTTEEEEEEETTTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEE
T ss_pred CccEEEEEcCCCcEEEEEcCCC---cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEec
Confidence 677999998 699999999876 33333332 66678899999 55 566666
Q ss_pred ccCCCCeEEEEeCCCCCeeeeeec--------------------------------------CCCeEEEEECCC--CCeE
Q psy8285 356 GGICDQTVRLWNSMNGKEKCHVKT--------------------------------------DSQVTSILWSEQ--YREL 395 (507)
Q Consensus 356 ~~~~d~~i~i~d~~~~~~~~~~~~--------------------------------------~~~i~~~~~s~~--~~~l 395 (507)
+. |+.|++||+.+++....+.. ...|.+++|+++ +.+|
T Consensus 347 ~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l 424 (437)
T 3gre_A 347 EA--TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLL 424 (437)
T ss_dssp GG--GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEE
T ss_pred CC--CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEE
Confidence 65 99999999999887766653 367999999998 6678
Q ss_pred EEEeccCCCeEEEEe
Q psy8285 396 VTSHGKQDCSLKMWE 410 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d 410 (507)
++ |+.||.|+||+
T Consensus 425 ~s--~~~dG~I~iw~ 437 (437)
T 3gre_A 425 VA--CDNSGLIGIFQ 437 (437)
T ss_dssp EE--EETTSCEEEEC
T ss_pred EE--EcCCceEEEeC
Confidence 87 88999999995
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=251.77 Aligned_cols=235 Identities=17% Similarity=0.308 Sum_probs=191.1
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-eeE
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE-RLI 244 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~-~~~ 244 (507)
|.+++|+|++ +++++.|+.|++|++++++...... + |...+.++.+ ++..++++ +.++.+++|+.... ..+
T Consensus 70 V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~--~-h~~~~~~~~~--~~~~l~s~-~~~~~~~~~~~~~~~~~~ 143 (318)
T 4ggc_A 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT--S-HSARVGSLSW--NSYILSSG-SRSGHIHHHDVRVAEHHV 143 (318)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--C-CSSCEEEEEE--ETTEEEEE-ETTSEEEEEETTSSSCEE
T ss_pred EEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEec--C-ccceEEEeec--CCCEEEEE-ecCCceEeeecCCCceeE
Confidence 4456777765 6777899999999999998766554 3 8888877655 46688888 99999999998875 456
Q ss_pred EEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc---CceeeecCCCceEEEEEcCCCCEE-E--EEe-CCcE
Q psy8285 245 QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD---YPTAITREGDVVCGLKWSPNGRYL-A--SGS-NNTV 315 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l-~--~~~-d~~i 315 (507)
..+.+|...+..+.+ ++++|++++.|+.|++||+++++. .......+...|.++.++|++..+ . +++ ++.|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i 223 (318)
T 4ggc_A 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 223 (318)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEE
T ss_pred EEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEE
Confidence 678889999999999 689999999999999999987652 234556778899999999976543 3 334 4999
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCe
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRE 394 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~ 394 (507)
++||.+.. ... ....+...+..+.|+|++..+++++ +..|+.|++||+++++++..+.+| ..|++++|+|++++
T Consensus 224 ~lwd~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~~~~s-g~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~ 298 (318)
T 4ggc_A 224 RIWNVCSG---ACL-SAVDAHSQVCSILWSPHYKELISGH-GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 298 (318)
T ss_dssp EEEETTTC---CEE-EEEECSSCEEEEEEETTTTEEEEEE-CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSC
T ss_pred EEEecccc---ccc-ccccceeeeeeeeecccccceEEEE-EcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCE
Confidence 99999875 333 3445778899999999997776654 235999999999999999999877 78999999999999
Q ss_pred EEEEeccCCCeEEEEeCCCcc
Q psy8285 395 LVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 395 l~~~~g~~d~~i~v~d~~~~~ 415 (507)
|++ ++.|+.|+|||+....
T Consensus 299 l~S--~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 299 VAS--AAADETLRLWRCFELD 317 (318)
T ss_dssp EEE--EETTTEEEEECCSCCC
T ss_pred EEE--EecCCeEEEEECCCCC
Confidence 999 8899999999997654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=261.76 Aligned_cols=275 Identities=10% Similarity=0.041 Sum_probs=226.1
Q ss_pred eeeeCCCC-EEEEE-cCCeEEEEECCCCceeEEEe---cCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 170 GLDWGYHD-TLAVA-LDTSVYTWNTKTNKTQLLVE---YPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 170 ~~~~s~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
+++|+|++ +++++ .++.|++||+.+++...... +.+ |...|.+++|+|++..++++ +.|+.|++||+.+++.+
T Consensus 127 ~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~s~-~~d~~v~~~d~~~~~~~ 204 (433)
T 3bws_A 127 SVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKK-KLGFVETISIPEHNELWVSQ-MQANAVHVFDLKTLAYK 204 (433)
T ss_dssp CCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHT-TCCEEEEEEEGGGTEEEEEE-GGGTEEEEEETTTCCEE
T ss_pred EEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccc-cCCceeEEEEcCCCEEEEEE-CCCCEEEEEECCCceEE
Confidence 57788866 44443 67789999999988765432 335 88899999999999888888 89999999999999999
Q ss_pred EEEeecCccEEEEEe--eCCEEE-EEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe---------C
Q psy8285 245 QKLRTHMHQVIAMCW--NGNLLS-CGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS---------N 312 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------d 312 (507)
..+..|...+.+++| +++.++ +++.++.|++||+++++ ....+. ....+.+++|+|+++++++++ |
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~d 282 (433)
T 3bws_A 205 ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL-EIRKTD-KIGLPRGLLLSKDGKELYIAQFSASNQESGG 282 (433)
T ss_dssp EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE-EEEECC-CCSEEEEEEECTTSSEEEEEEEESCTTCSCC
T ss_pred EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc-EEEEec-CCCCceEEEEcCCCCEEEEEECCCCccccCC
Confidence 999889999999999 567664 55579999999998765 333333 345689999999999988877 4
Q ss_pred CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCC
Q psy8285 313 NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQY 392 (507)
Q Consensus 313 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~ 392 (507)
+.|++||++++ +..... .+...+.+++|+|+++.+++++.. ++.|++||+.+++.+..+.....+.+++|+|++
T Consensus 283 g~i~~~d~~~~---~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~--~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg 356 (433)
T 3bws_A 283 GRLGIYSMDKE---KLIDTI-GPPGNKRHIVSGNTENKIYVSDMC--CSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDG 356 (433)
T ss_dssp EEEEEEETTTT---EEEEEE-EEEECEEEEEECSSTTEEEEEETT--TTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred CeEEEEECCCC---cEEeec-cCCCCcceEEECCCCCEEEEEecC--CCEEEEEECCCCcEEEEecCCCCCCeEEEcCCC
Confidence 68999999876 444443 466688999999999888888765 999999999999988888877889999999999
Q ss_pred CeEEEEeccC-------------CCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeC-CCcEEEEecCC
Q psy8285 393 RELVTSHGKQ-------------DCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA-DETISIWNCFP 455 (507)
Q Consensus 393 ~~l~~~~g~~-------------d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-dg~i~iw~~~~ 455 (507)
++++++.... ||.|++||+.+++.+..+.. ...+.+++|+|++++|++++. |+.|++|++..
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 9988842111 57999999999999888876 457899999999999988875 99999999863
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-33 Score=262.19 Aligned_cols=245 Identities=19% Similarity=0.352 Sum_probs=206.8
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC--CceeEEEEeecCccEEEEEee----CCEEEEEecCCeEEEEECCC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ--EERLIQKLRTHMHQVIAMCWN----GNLLSCGTIGGNILHYDVRT 280 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~ 280 (507)
|...|++++|+|++++|+++ +.||.|++||+. +++.+..+.+|...|.+++|. +++|++++.||.|++||+.+
T Consensus 10 h~~~v~~~~~s~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATC-SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 88 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEE-ETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET
T ss_pred CcccEEEEEEcCCCCEEEEE-ECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC
Confidence 99999999999999999999 899999999998 667778888999999999993 89999999999999999988
Q ss_pred CC-cCceeeecCCCceEEEEEcCC--CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEcc----------
Q psy8285 281 HS-DYPTAITREGDVVCGLKWSPN--GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCP---------- 346 (507)
Q Consensus 281 ~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~---------- 346 (507)
++ .....+..|...|.+++|+|+ ++++++++ |+.|++||++.... .....+..|...|.+++|+|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 167 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-TSPIIIDAHAIGVNSASWAPATIEEDGEHN 167 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-CCEEEEECCTTCEEEEEECCCC--------
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-eeeEEecCCCCceEEEEEcCcccccccccc
Confidence 64 135566778999999999999 99999999 69999999987632 33445667999999999999
Q ss_pred ---CCCcEEEEEccCCCCeEEEEeCCCCCe----eeeeecC-CCeEEEEECCC---CCeEEEEeccCCCeEEEEeCCCcc
Q psy8285 347 ---WEPTLLATGGGICDQTVRLWNSMNGKE----KCHVKTD-SQVTSILWSEQ---YRELVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 347 ---~~~~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~~~-~~i~~~~~s~~---~~~l~~~~g~~d~~i~v~d~~~~~ 415 (507)
++. ++++++. |+.|++||+++++. ...+..+ ..|.+++|+|+ +++|++ ++.||.|++||+++++
T Consensus 168 ~~~~~~-~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s--~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 168 GTKESR-KFVTGGA--DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp --CTTC-EEEEEET--TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTSCEEEEEESSTT
T ss_pred CCCCCC-EEEEEeC--CCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE--EeCCCEEEEEeCCCCC
Confidence 464 5555554 99999999987753 3444544 78999999999 888888 7899999999998864
Q ss_pred -----EEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 416 -----LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 416 -----~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
.+.....|...|++++|+|++++|++++.||.|++|++.....
T Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred ccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 2222334888999999999999999999999999999986543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=259.99 Aligned_cols=242 Identities=19% Similarity=0.340 Sum_probs=197.6
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEcc--CCCeEEEEeCCCCcEEEEeCCC
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKP--RTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
...|.+++|+|++ +++++.|+.|++||+.+++......+.+ |...|.+++|+| ++++|+++ +.|++|++||+.+
T Consensus 13 ~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~~~l~s~-s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 13 EDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRG-HEGPVWQVAWAHPMYGNILASC-SYDRKVIIWREEN 90 (316)
T ss_dssp -CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEEC-CSSCEEEEEECCGGGSSCEEEE-ETTSCEEEECCSS
T ss_pred cCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcC-CCccEEEEEeCCCCCCCEEEEE-ECCCEEEEEECCC
Confidence 4468899999987 6677899999999998876555666777 999999999986 47899998 9999999999988
Q ss_pred c--eeEEEEeecCccEEEEEe--e--CCEEEEEecCCeEEEEECCCCCc--CceeeecCCCceEEEEEcCC---------
Q psy8285 241 E--RLIQKLRTHMHQVIAMCW--N--GNLLSCGTIGGNILHYDVRTHSD--YPTAITREGDVVCGLKWSPN--------- 303 (507)
Q Consensus 241 ~--~~~~~~~~~~~~v~~~~~--~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~--------- 303 (507)
+ +....+.+|...|.+++| + +.+|++++.|+.|++||++.... ....+..|...+.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 170 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDH 170 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccccc
Confidence 7 356677889999999999 3 67999999999999999987532 13455678889999999997
Q ss_pred --------CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCC---CcEEEEEccCCCCeEEEEeCCCC
Q psy8285 304 --------GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWE---PTLLATGGGICDQTVRLWNSMNG 371 (507)
Q Consensus 304 --------~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~~~d~~i~i~d~~~~ 371 (507)
+++|++++ |+.|++||++..........+.+|...|.+++|+|++ ..++++++. |++|++||+.+.
T Consensus 171 ~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~--D~~v~iw~~~~~ 248 (316)
T 3bg1_A 171 PSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQ--DGRVFIWTCDDA 248 (316)
T ss_dssp CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEET--TCEEEEEECSST
T ss_pred ccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcC--CCeEEEEEccCc
Confidence 46899988 7999999997542223566788899999999999986 256666665 999999998763
Q ss_pred C----eeeeeec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 372 K----EKCHVKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 372 ~----~~~~~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
. ....+.. ...+.+++|+|++++|++ ++.|+.|++|+..
T Consensus 249 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~las--~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 249 SSNTWSPKLLHKFNDVVWHVSWSITANILAV--SGGDNKVTLWKES 292 (316)
T ss_dssp TCCCCBCCEEEECSSCEEEEEECTTTCCEEE--EESSSCEEEEEEC
T ss_pred cccchhhhhhhcCCCcEEEEEEcCCCCEEEE--EcCCCeEEEEEEC
Confidence 1 1223333 478999999999999999 7899999999975
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-32 Score=262.47 Aligned_cols=279 Identities=11% Similarity=0.115 Sum_probs=225.3
Q ss_pred ceeeeeeCCCC-EEEEEcCCeEEEEECCCCc---eeEEEec---------------------------------------
Q psy8285 167 YTSGLDWGYHD-TLAVALDTSVYTWNTKTNK---TQLLVEY--------------------------------------- 203 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~---~~~~~~~--------------------------------------- 203 (507)
.+++++|++++ +++++.++.|++||+.+++ .......
T Consensus 6 p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred cEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 36789999998 7888889999999999888 3332221
Q ss_pred -------------CCCCCCceEEEEEccCCCeE-EEEeCCCCcEEEEeCC--CceeEEEEe--ecCccEEEEEe--eCCE
Q psy8285 204 -------------PTYDNAYISCVAWKPRTTDL-AVTNTCTEYIDLWHEQ--EERLIQKLR--THMHQVIAMCW--NGNL 263 (507)
Q Consensus 204 -------------~~~~~~~v~~~~~~~~~~~l-~~~~~~dg~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~--~~~~ 263 (507)
++ |...|.+++|+|++++| +++ +.||.|++||+. +++.+..+. .|...|.+++| ++++
T Consensus 86 ~~~~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPP-IYSYIRNLRLTSDESRLIACA-DSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp --------------C-CCCCEEEEEECTTSSEEEEEE-GGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccCccccCCCCCCCc-cCCceEEEEEcCCCCEEEEEE-CCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 11 34479999999999997 566 899999999999 888888876 56789999999 6889
Q ss_pred EEEEecCCeEEEEECCCCCc---CceeeecCCCceEEEEEcCC---CCEEEEEe-CCcEEEEEcCCCCCCCCeee-ecCC
Q psy8285 264 LSCGTIGGNILHYDVRTHSD---YPTAITREGDVVCGLKWSPN---GRYLASGS-NNTVKIWDFRQLDAKRPQVN-NQCH 335 (507)
Q Consensus 264 l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~---~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-~~~~ 335 (507)
|++++.+|.|++|++.+... ....+.+|...|.+++|+|+ +++|++++ |+.|++||++++ ..+.. +.+|
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~---~~~~~~~~~h 240 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC---FIVDKWLFGH 240 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT---TCEEEECCCC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC---ceeeeeecCC
Confidence 99999999999999987652 22366789999999999999 99999999 699999999987 66666 5589
Q ss_pred CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec--------------------------CCCeEEEEEC
Q psy8285 336 LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT--------------------------DSQVTSILWS 389 (507)
Q Consensus 336 ~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--------------------------~~~i~~~~~s 389 (507)
...|.+++|+ ++.. +++++. |+.|++||+++++++..+.. ...+.+++|+
T Consensus 241 ~~~v~~~~~s-d~~~-l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~ 316 (450)
T 2vdu_B 241 KHFVSSICCG-KDYL-LLSAGG--DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS 316 (450)
T ss_dssp SSCEEEEEEC-STTE-EEEEES--SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC
T ss_pred CCceEEEEEC-CCCE-EEEEeC--CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe
Confidence 9999999999 7754 445544 99999999999998877752 1468999999
Q ss_pred CCCCeEEEEeccCCCeEEEEeC--CCc---cEEEEeeccccceeEEEECCCCCEEEEEeC------CCcEEEEecCCC
Q psy8285 390 EQYRELVTSHGKQDCSLKMWEY--PRL---HLIEELKIHQERILSAVLSPDQTCVAAASA------DETISIWNCFPR 456 (507)
Q Consensus 390 ~~~~~l~~~~g~~d~~i~v~d~--~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~------dg~i~iw~~~~~ 456 (507)
|++++|+++ +..++.|++|++ .++ +.+..+..| ..|.+++|+|++.++++++. +..|.+|.+...
T Consensus 317 ~~~~~l~~~-~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 317 KNLPFVAFF-VEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp SSSSEEEEE-ETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CCCCEEEEE-ECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 999999994 237999999999 555 677778877 88999999996433333332 556899988654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=257.24 Aligned_cols=281 Identities=12% Similarity=0.154 Sum_probs=221.5
Q ss_pred ccceeeeeeCCC---C--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC
Q psy8285 165 DFYTSGLDWGYH---D--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ 239 (507)
Q Consensus 165 ~~~i~~~~~s~~---~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~ 239 (507)
...|++++|+|+ + +++++.|+.|++|++.+........+.+ |...|.+++|+|++++|+++ +.||.|++||+.
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~-~~dg~v~iwd~~ 116 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM-HTGPVLDVCWSDDGSKVFTA-SCDKTAKMWDLS 116 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE-CSSCEEEEEECTTSSEEEEE-ETTSEEEEEETT
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecc-ccCCEEEEEECcCCCEEEEE-cCCCcEEEEEcC
Confidence 456899999998 4 6667789999999998733333233444 89999999999999999999 999999999999
Q ss_pred CceeEEEEeecCccEEEEEe----eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCc
Q psy8285 240 EERLIQKLRTHMHQVIAMCW----NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNT 314 (507)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~ 314 (507)
+++.+. +..|...|.+++| ++++|++++.||.|++||+++.+ ....+..+ ..+.++.+.++ .+++++ ++.
T Consensus 117 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~ 191 (368)
T 3mmy_A 117 SNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN-PMMVLQLP-ERCYCADVIYP--MAVVATAERG 191 (368)
T ss_dssp TTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS-CSEEEECS-SCEEEEEEETT--EEEEEEGGGC
T ss_pred CCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc-EEEEEecC-CCceEEEecCC--eeEEEeCCCc
Confidence 988766 5669999999999 46789999999999999999876 45555544 45666776644 566666 699
Q ss_pred EEEEEcCCCCCCCCeee-ecCCCCCeeEEEEccCCCc---EEEEEccCCCCeEEEEeCCCC---CeeeeeecCC------
Q psy8285 315 VKIWDFRQLDAKRPQVN-NQCHLSAVKAIAWCPWEPT---LLATGGGICDQTVRLWNSMNG---KEKCHVKTDS------ 381 (507)
Q Consensus 315 i~i~d~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~---~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~------ 381 (507)
+.+|+++... ..... ...+...+.++.+.++... .+++++. |+.|++||++.. +.+..+..+.
T Consensus 192 i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (368)
T 3mmy_A 192 LIVYQLENQP--SEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI--EGRVAIHYINPPNPAKDNFTFKCHRSNGTNT 267 (368)
T ss_dssp EEEEECSSSC--EEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET--TSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred EEEEEecccc--chhhhccccccCCCceEEEcccCCCCCCeEEEecC--CCcEEEEecCCCCccccceeeeeeecccccc
Confidence 9999998751 11111 1224455667776665533 2444443 999999999887 4455665553
Q ss_pred -------CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 382 -------QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 382 -------~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
.+.+++|+|++++|++ ++.||.|++||+.+++++..+.+|...|++++|+|++++|++++.|+..+.|++.
T Consensus 268 ~~~~~~~~v~~~~~sp~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 268 SAPQDIYAVNGIAFHPVHGTLAT--VGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp CCCEEECCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred cccccccceEEEEEecCCCEEEE--EccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 6999999999999999 8899999999999999999999999999999999999999999999877777765
Q ss_pred CCCc
Q psy8285 455 PRDK 458 (507)
Q Consensus 455 ~~~~ 458 (507)
+.+.
T Consensus 346 ~~~~ 349 (368)
T 3mmy_A 346 NPQK 349 (368)
T ss_dssp CTTS
T ss_pred CCCc
Confidence 5443
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-33 Score=266.33 Aligned_cols=245 Identities=20% Similarity=0.379 Sum_probs=211.3
Q ss_pred CCCceEEEEEccC-CCeEEEEeCCCCcEEEEeCCC----------ceeEEEEeecCccEEEEEe--eCC-EEEEEecCCe
Q psy8285 207 DNAYISCVAWKPR-TTDLAVTNTCTEYIDLWHEQE----------ERLIQKLRTHMHQVIAMCW--NGN-LLSCGTIGGN 272 (507)
Q Consensus 207 ~~~~v~~~~~~~~-~~~l~~~~~~dg~i~iwd~~~----------~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~ 272 (507)
|.+.|++++|+|+ +.+|+++ +.+|.|++||+.+ .+.+..+.+|...+.+++| ++. +|++++.||.
T Consensus 127 h~~~v~~l~~~p~~~~~lat~-~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATK-TPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEE-CSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred CCCcEEEEEECCCCCcEEEEE-CCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 8899999999998 5677777 9999999999986 5778888999999999999 455 9999999999
Q ss_pred EEEEECCCCCc------CceeeecCCCceEEEEEcC-CCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEE
Q psy8285 273 ILHYDVRTHSD------YPTAITREGDVVCGLKWSP-NGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAW 344 (507)
Q Consensus 273 i~i~d~~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~ 344 (507)
|++|++..... ....+..|...|.+++|+| ++.+|++++ |+.|++||++.......+..+..|...|++++|
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 285 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEE
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEe
Confidence 99999987432 1445668999999999999 678888888 699999999986444567777789999999999
Q ss_pred ccCCCcEEEEEccCCCCeEEEEeCCC-CCeeeeeecC-CCeEEEEECCCCCe-EEEEeccCCCeEEEEeCCC--------
Q psy8285 345 CPWEPTLLATGGGICDQTVRLWNSMN-GKEKCHVKTD-SQVTSILWSEQYRE-LVTSHGKQDCSLKMWEYPR-------- 413 (507)
Q Consensus 345 ~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~-~~i~~~~~s~~~~~-l~~~~g~~d~~i~v~d~~~-------- 413 (507)
+|++.+++++++. |+.|++||+++ .+++..+..+ ..+.+++|+|+++. |++ ++.|+.|++||+..
T Consensus 286 ~p~~~~~l~tg~~--dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 286 NPYSEFILATGSA--DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS--SGTDRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp CSSCTTEEEEEET--TSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE--EETTSCCEEEEGGGTTCCCCHH
T ss_pred CCCCCCEEEEEeC--CCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE--EeCCCcEEEEeCCCCccccCcc
Confidence 9999888888775 99999999998 5667777755 78999999999976 555 77899999999986
Q ss_pred ------ccEEEEeeccccceeEEEECCCCC-EEEEEeCCCcEEEEecCCC
Q psy8285 414 ------LHLIEELKIHQERILSAVLSPDQT-CVAAASADETISIWNCFPR 456 (507)
Q Consensus 414 ------~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~ 456 (507)
.+.+..+.+|...|++++|+|+++ +|++++.||.|++|++...
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 367778888999999999999999 8999999999999999754
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-33 Score=263.14 Aligned_cols=232 Identities=14% Similarity=0.211 Sum_probs=183.2
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEE--ccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAW--KPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
|.+++|+|++ +++++.|+.|++||+.+++...... |...|.+++| +|++.+|+++ +.||.|++||+.+++.
T Consensus 89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ----HDAPVKTIHWIKAPNYSCVMTG-SWDKTLKFWDTRSSNP 163 (368)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEEEECSSCEEEEEE-ETTSEEEEECSSCSSC
T ss_pred EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeecc----ccCceEEEEEEeCCCCCEEEEc-cCCCcEEEEECCCCcE
Confidence 4456777765 6677899999999999988766443 8899999999 8999999998 9999999999999998
Q ss_pred EEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceee-ecCCCceEEEEEcCCCCE----EEEEe-CCcEEE
Q psy8285 244 IQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAI-TREGDVVCGLKWSPNGRY----LASGS-NNTVKI 317 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~----l~~~~-d~~i~i 317 (507)
+..+..+. .+.++.+....+++++.++.+.+|+++......... ..+...+.++.+.++... +++++ |+.|++
T Consensus 164 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 242 (368)
T 3mmy_A 164 MMVLQLPE-RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAI 242 (368)
T ss_dssp SEEEECSS-CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred EEEEecCC-CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence 88888664 678888888899999999999999998764322222 233455666776665543 88888 699999
Q ss_pred EEcCCCCCCCCeeeecCCCC------------CeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeE
Q psy8285 318 WDFRQLDAKRPQVNNQCHLS------------AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVT 384 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~ 384 (507)
||++..........+..|.. .|.+++|+|++..+++.+. |+.|++||+.+++++..+..+ ..+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~ 319 (368)
T 3mmy_A 243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS---DGRFSFWDKDARTKLKTSEQLDQPIS 319 (368)
T ss_dssp EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET---TSCEEEEETTTTEEEEECCCCSSCEE
T ss_pred EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc---CCeEEEEECCCCcEEEEecCCCCCce
Confidence 99987632234555666665 7999999999966655544 999999999999999888876 7899
Q ss_pred EEEECCCCCeEEEEeccCCCeEEEEe
Q psy8285 385 SILWSEQYRELVTSHGKQDCSLKMWE 410 (507)
Q Consensus 385 ~~~~s~~~~~l~~~~g~~d~~i~v~d 410 (507)
+++|+|++++|++ ++.|+..+.|+
T Consensus 320 ~~~~s~~g~~l~~--~s~d~~~~~~~ 343 (368)
T 3mmy_A 320 ACCFNHNGNIFAY--ASSYDWSKGHE 343 (368)
T ss_dssp EEEECTTSSCEEE--EECCCSTTCGG
T ss_pred EEEECCCCCeEEE--Eeccccccccc
Confidence 9999999999999 66666444444
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-31 Score=251.05 Aligned_cols=277 Identities=13% Similarity=0.093 Sum_probs=215.1
Q ss_pred eeeeCCCC--EEEE-EcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 170 GLDWGYHD--TLAV-ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 170 ~~~~s~~~--~~~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
+++|+|++ ++++ +.++.|++||+.+++....... ...+.+++|+|++++|++++..++.|++||+.+++.+..
T Consensus 36 ~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~ 111 (391)
T 1l0q_A 36 GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA----GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT 111 (391)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC----CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE
Confidence 35566665 3233 3799999999999988776663 348999999999999877757789999999999998887
Q ss_pred EeecCccEEEEEe--eCCEE-EEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEE-EEe-CCcEEEEEcC
Q psy8285 247 LRTHMHQVIAMCW--NGNLL-SCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLA-SGS-NNTVKIWDFR 321 (507)
Q Consensus 247 ~~~~~~~v~~~~~--~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~ 321 (507)
+..+ ..+.+++| +++.+ ++++.++.|++||+.+++ ....+.. ...+.+++|+|+++.++ ++. ++.|++||++
T Consensus 112 ~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~ 188 (391)
T 1l0q_A 112 VKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-VINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTV 188 (391)
T ss_dssp EECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred EeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 7754 46789999 57766 688889999999998875 3444444 35679999999999885 444 5999999998
Q ss_pred CCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEecc
Q psy8285 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGK 401 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~ 401 (507)
++ +....+. +...+.+++|+|+++.+++++....++.|++||+.+++.+..+..+..+.+++|+|++++++++ ++
T Consensus 189 ~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s-~~ 263 (391)
T 1l0q_A 189 TN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVA-LS 263 (391)
T ss_dssp TT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEE-ET
T ss_pred CC---eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEE-cC
Confidence 86 5555554 5678999999999987777764112899999999999999888888889999999999988654 67
Q ss_pred CCCeEEEEeCCCccEEEEeecccccee---EEEECC------------CC----------CEEEEEeCCCcEEEEecCCC
Q psy8285 402 QDCSLKMWEYPRLHLIEELKIHQERIL---SAVLSP------------DQ----------TCVAAASADETISIWNCFPR 456 (507)
Q Consensus 402 ~d~~i~v~d~~~~~~~~~~~~~~~~i~---~~~~s~------------~~----------~~l~s~~~dg~i~iw~~~~~ 456 (507)
.|+.|++||+.+++.+..+..|..+.. .+.+.| +. ..+...+.|..+++|++.++
T Consensus 264 ~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g 343 (391)
T 1l0q_A 264 FXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDG 343 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSS
T ss_pred CCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCC
Confidence 899999999999999888876654421 122222 11 23555667889999999876
Q ss_pred Cc
Q psy8285 457 DK 458 (507)
Q Consensus 457 ~~ 458 (507)
..
T Consensus 344 ~~ 345 (391)
T 1l0q_A 344 SS 345 (391)
T ss_dssp CE
T ss_pred cc
Confidence 64
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-32 Score=253.69 Aligned_cols=242 Identities=17% Similarity=0.184 Sum_probs=207.6
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce---eEEEEeecCccEEEEEe--eCC-EEEEEecCCeEEEEEC-C
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER---LIQKLRTHMHQVIAMCW--NGN-LLSCGTIGGNILHYDV-R 279 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~i~d~-~ 279 (507)
|.+.|++++|+|++++|+++ +.||.|++||+.+++ ....+..|...|.+++| +++ +|++++.||.|++||+ .
T Consensus 10 h~~~v~~~~~s~~~~~l~~~-~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLIT-SWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEE-ETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCcEEEEEEcCCCCEEEEE-cCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence 89999999999999999999 899999999998876 34556689999999999 688 9999999999999999 7
Q ss_pred CCCcCceeeec--CCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCC---------CCCCCCeeeecCCCCCeeEEEEccC
Q psy8285 280 THSDYPTAITR--EGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQ---------LDAKRPQVNNQCHLSAVKAIAWCPW 347 (507)
Q Consensus 280 ~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~---------~~~~~~~~~~~~~~~~v~~~~~~~~ 347 (507)
+.. ...+.. |...|.+++|+| ++++++++ |+.|++||++. . +++..+. |...+.+++|+|+
T Consensus 89 ~~~--~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~-~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 89 SPS--FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKN---LNSNNTK-VKNKIFTMDTNSS 161 (342)
T ss_dssp SSS--EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEE---SCSSSSS-SCCCEEEEEECSS
T ss_pred CCc--eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccC---CeeeEEe-eCCceEEEEecCC
Confidence 764 466777 999999999999 99999998 69999999987 5 5555555 8899999999997
Q ss_pred CCcEEEEEccCCCCeEEEEeCCC-CCee---eeeecCCCeEEEEECC-CCCeEEEEeccCCCeEEEEeCCCc------cE
Q psy8285 348 EPTLLATGGGICDQTVRLWNSMN-GKEK---CHVKTDSQVTSILWSE-QYRELVTSHGKQDCSLKMWEYPRL------HL 416 (507)
Q Consensus 348 ~~~~~~~~~~~~d~~i~i~d~~~-~~~~---~~~~~~~~i~~~~~s~-~~~~l~~~~g~~d~~i~v~d~~~~------~~ 416 (507)
+ +++ ++. |+.|++||+++ +... ........+.+++|+| +++++++ ++.||.|++|+++.. +.
T Consensus 162 ~--l~~-~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~--~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 162 R--LIV-GMN--NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC--SSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp E--EEE-EES--TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEE--EETTSEEEEEECCTTCCSTTCTT
T ss_pred c--EEE-EeC--CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEE--EecCCcEEEEEEcCCCccccccc
Confidence 6 444 443 99999999988 5532 2222346899999999 9999999 788999999999887 77
Q ss_pred EEEeecccc---------ceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccccee
Q psy8285 417 IEELKIHQE---------RILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 417 ~~~~~~~~~---------~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 463 (507)
...+..|.. .|.+++|+|++++|++++.||.|++||+.+++....+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh
Confidence 888888765 99999999999999999999999999999887766544
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=261.77 Aligned_cols=239 Identities=14% Similarity=0.251 Sum_probs=193.4
Q ss_pred eeeeeeCC-CC--EEEEEcCCeEEEEECCCCce-----eEEEecCCCCCCceEEEEEccCC-CeEEEEeCCCCcEEEEeC
Q psy8285 168 TSGLDWGY-HD--TLAVALDTSVYTWNTKTNKT-----QLLVEYPTYDNAYISCVAWKPRT-TDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 168 i~~~~~s~-~~--~~~~~~~~~i~iw~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~dg~i~iwd~ 238 (507)
|.+++|+| ++ +++++.|+.|++|++.++.. .....+.+ |...|.+++|+|++ ..|+++ +.||.|++||+
T Consensus 84 V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~-~~dg~i~iwd~ 161 (402)
T 2aq5_A 84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG-HTKRVGIVAWHPTAQNVLLSA-GCDNVILVWDV 161 (402)
T ss_dssp EEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC-CSSCEEEEEECSSBTTEEEEE-ETTSCEEEEET
T ss_pred EEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC-CCCeEEEEEECcCCCCEEEEE-cCCCEEEEEEC
Confidence 56788888 55 66677999999999988742 22334445 99999999999998 577777 99999999999
Q ss_pred CCceeEEEE--eecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceee-ecCCCc-eEEEEEcCCCCEEEEE--
Q psy8285 239 QEERLIQKL--RTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAI-TREGDV-VCGLKWSPNGRYLASG-- 310 (507)
Q Consensus 239 ~~~~~~~~~--~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~-- 310 (507)
.+++.+..+ ..|...|.+++| ++++|++++.|+.|++||+++++ ....+ ..|... +.++.|+|++++|+++
T Consensus 162 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 240 (402)
T 2aq5_A 162 GTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGT-VVAEKDRPHEGTRPVHAVFVSEGKILTTGFS 240 (402)
T ss_dssp TTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE-EEEEEECSSCSSSCCEEEECSTTEEEEEEEC
T ss_pred CCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCc-eeeeeccCCCCCcceEEEEcCCCcEEEEecc
Confidence 999999999 789999999999 68999999999999999999876 34444 567665 8999999999999998
Q ss_pred -e-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe-eeee---ecCCCeE
Q psy8285 311 -S-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE-KCHV---KTDSQVT 384 (507)
Q Consensus 311 -~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~---~~~~~i~ 384 (507)
+ |+.|++||++......... ...|...+.+++|+|++..++++++. |+.|++||+.++++ +..+ .+...+.
T Consensus 241 ~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~g~~--dg~i~i~d~~~~~~~~~~l~~~~~~~~v~ 317 (402)
T 2aq5_A 241 RMSERQVALWDTKHLEEPLSLQ-ELDTSSGVLLPFFDPDTNIVYLCGKG--DSSIRYFEITSEAPFLHYLSMFSSKESQR 317 (402)
T ss_dssp TTCCEEEEEEETTBCSSCSEEE-ECCCCSSCEEEEEETTTTEEEEEETT--CSCEEEEEECSSTTCEEEEEEECCSSCCS
T ss_pred CCCCceEEEEcCccccCCceEE-eccCCCceeEEEEcCCCCEEEEEEcC--CCeEEEEEecCCCcceEeecccccCCccc
Confidence 4 6999999999863211122 22477889999999999888777765 99999999998874 3333 3347899
Q ss_pred EEEECCCCCeEEEEeccCCCeEEEEeCCCccE
Q psy8285 385 SILWSEQYRELVTSHGKQDCSLKMWEYPRLHL 416 (507)
Q Consensus 385 ~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~ 416 (507)
+++|+|++.++++ .++.+++|++.+++.
T Consensus 318 ~~~~sp~~~~~~s----~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 318 GMGYMPKRGLEVN----KCEIARFYKLHERKC 345 (402)
T ss_dssp EEEECCGGGSCGG----GTEEEEEEEEETTEE
T ss_pred ceEEeccccccee----cceeEEEEEcCCCcE
Confidence 9999999998765 356999999987543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-31 Score=246.87 Aligned_cols=279 Identities=14% Similarity=0.142 Sum_probs=216.0
Q ss_pred ccceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 165 DFYTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 165 ~~~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
...|.+++|+|++ +++++.+..+++|+..+++....... ..+..+++.++++.++++++.|+.|++||..+++.
T Consensus 19 ~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM-----RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD 93 (355)
T ss_dssp CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC-----SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred CCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec-----CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence 3458899999998 78888777899999987765544332 24788899999988876658889999999999999
Q ss_pred EEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEE--e-CCcEEEEEc
Q psy8285 244 IQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASG--S-NNTVKIWDF 320 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~-d~~i~i~d~ 320 (507)
+..+. +...|.++.++.+.++++. ++.|++||+.+.......+.. ....+++++ .+++++ + +|.|++||+
T Consensus 94 ~~~~~-~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~ 166 (355)
T 3vu4_A 94 VSRIK-VDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKL 166 (355)
T ss_dssp EEEEE-CSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEEC
T ss_pred EEEEE-CCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEEC
Confidence 88886 6779999999888777765 789999999987223333333 444566777 666664 4 599999999
Q ss_pred CCCCC------------CCC-eeeecCCCCCeeEEEEccCCCcEEEEEccCCCCe-EEEEeCCCCCeeeeee---cCCCe
Q psy8285 321 RQLDA------------KRP-QVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQT-VRLWNSMNGKEKCHVK---TDSQV 383 (507)
Q Consensus 321 ~~~~~------------~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~~~~~~~~~---~~~~i 383 (507)
+++.. ..+ +..+.+|...|.+++|+|++. ++++++. |++ |++||+++++++..+. +...|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~-~l~s~s~--d~~~v~iwd~~~~~~~~~~~~g~h~~~v 243 (355)
T 3vu4_A 167 QSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSD-MVATCSQ--DGTIIRVFKTEDGVLVREFRRGLDRADV 243 (355)
T ss_dssp CC------------------CCEEECCCSSCEEEEEECTTSS-EEEEEET--TCSEEEEEETTTCCEEEEEECTTCCSCE
T ss_pred CCCCccccccccccccccCcccEEEEccCCceEEEEECCCCC-EEEEEeC--CCCEEEEEECCCCcEEEEEEcCCCCCcE
Confidence 87520 012 677889999999999999985 5555554 998 9999999999999998 34789
Q ss_pred EEEEECCCCCeEEEEeccCCCeEEEEeCCCccE--EEEee---------------------ccccceeEEEECCCCCEEE
Q psy8285 384 TSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL--IEELK---------------------IHQERILSAVLSPDQTCVA 440 (507)
Q Consensus 384 ~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~--~~~~~---------------------~~~~~i~~~~~s~~~~~l~ 440 (507)
.+++|+|++++|++ ++.|+.|++||++.... ...+. .+......++|++++++|+
T Consensus 244 ~~~~~s~~~~~l~s--~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~ 321 (355)
T 3vu4_A 244 VDMKWSTDGSKLAV--VSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVV 321 (355)
T ss_dssp EEEEECTTSCEEEE--EETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEE
T ss_pred EEEEECCCCCEEEE--EECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEE
Confidence 99999999999999 88999999999976431 11111 1122346789999999999
Q ss_pred EEeCCCcEEEEecCCCCccc
Q psy8285 441 AASADETISIWNCFPRDKKR 460 (507)
Q Consensus 441 s~~~dg~i~iw~~~~~~~~~ 460 (507)
+++.||.+++|++.+.+...
T Consensus 322 ~~~~dg~~~~~~~~~~~~~~ 341 (355)
T 3vu4_A 322 VWPHTRMIETFKVVFDDEME 341 (355)
T ss_dssp EETTTTEEEEEEEEEETTTT
T ss_pred EEeCCCeEEEEEEEcCCCCc
Confidence 99999999999998765443
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-30 Score=247.78 Aligned_cols=271 Identities=13% Similarity=0.138 Sum_probs=222.6
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAM 257 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 257 (507)
+++++.++.|++||+.+++...... +...+.+++|+|++++++++++.++.|++||+.+++.+..+..+. .+.++
T Consensus 5 ~vs~~~d~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 5 YIANSESDNISVIDVTSNKVTATIP----VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEcCCCCEEEEEECCCCeEEEEee----cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 4555689999999999998776665 334689999999999886554799999999999999988887655 89999
Q ss_pred Ee--eCCEEEE-EecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEE-EEEe-CCcEEEEEcCCCCCCCCeeee
Q psy8285 258 CW--NGNLLSC-GTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYL-ASGS-NNTVKIWDFRQLDAKRPQVNN 332 (507)
Q Consensus 258 ~~--~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~-d~~i~i~d~~~~~~~~~~~~~ 332 (507)
+| +++.|++ +..++.|++||+.+++ ....+. +...+.+++|+|+++.+ ++++ ++.|++||++++ +.+..+
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNT-VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK---AVINTV 154 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEE
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCe-EEEEEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEE
Confidence 99 5777654 4567999999999875 333343 45578999999999987 5555 599999999887 566666
Q ss_pred cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEecc--CCCeEEEEe
Q psy8285 333 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGK--QDCSLKMWE 410 (507)
Q Consensus 333 ~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~--~d~~i~v~d 410 (507)
..+ ..+.+++|+|+++.+++++.. ++.|++||+++++....+..+..+.+++|+|++++++++ +. .++.|++||
T Consensus 155 ~~~-~~~~~~~~~~dg~~l~~~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~~~~~~v~~~d 230 (391)
T 1l0q_A 155 SVG-RSPKGIAVTPDGTKVYVANFD--SMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVT-NVDKYFNTVSMID 230 (391)
T ss_dssp ECC-SSEEEEEECTTSSEEEEEETT--TTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEE-EECSSCCEEEEEE
T ss_pred ecC-CCcceEEECCCCCEEEEEeCC--CCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEE-ecCcCCCcEEEEE
Confidence 544 567999999999888777765 899999999999988888888889999999999999984 22 689999999
Q ss_pred CCCccEEEEeeccccceeEEEECCCCCEE-EEEeCCCcEEEEecCCCCccccee
Q psy8285 411 YPRLHLIEELKIHQERILSAVLSPDQTCV-AAASADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 411 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~ 463 (507)
+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++....+.
T Consensus 231 ~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 231 TGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp TTTTEEEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCCeEEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 99999988888765 47899999999987 667889999999999887665543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=247.21 Aligned_cols=246 Identities=20% Similarity=0.317 Sum_probs=202.8
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccC--CCeEEEEeCCCCcEEEEeCCC
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR--TTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~dg~i~iwd~~~ 240 (507)
...|.+++|+|++ +++++.|+.|++|++..........+.+ |...|++++|+|+ +++|+++ +.||.|++||+.+
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~-~~dg~v~iwd~~~ 88 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASC-SYDGKVLIWKEEN 88 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEE-ETTSCEEEEEEET
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecC-CCCcEEEEEeCCCCCCCEEEEe-ccCCEEEEEEcCC
Confidence 3458899999988 5566689999999998666556666666 9999999999987 8999998 9999999999999
Q ss_pred ce--eEEEEeecCccEEEEEe--e--CCEEEEEecCCeEEEEECCCCCc-CceeeecCCCceEEEEEcC-----------
Q psy8285 241 ER--LIQKLRTHMHQVIAMCW--N--GNLLSCGTIGGNILHYDVRTHSD-YPTAITREGDVVCGLKWSP----------- 302 (507)
Q Consensus 241 ~~--~~~~~~~~~~~v~~~~~--~--~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~----------- 302 (507)
++ .+..+..|...|.+++| + +.+|++++.|+.|++||++.... ....+..|...|.+++|+|
T Consensus 89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 168 (379)
T 3jrp_A 89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 168 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---------
T ss_pred CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccC
Confidence 87 67778889999999999 4 78999999999999999998742 3445678999999999999
Q ss_pred --CCCEEEEEe-CCcEEEEEcCCCCCC-CCeeeecCCCCCeeEEEEccCC--CcEEEEEccCCCCeEEEEeCCCCCe---
Q psy8285 303 --NGRYLASGS-NNTVKIWDFRQLDAK-RPQVNNQCHLSAVKAIAWCPWE--PTLLATGGGICDQTVRLWNSMNGKE--- 373 (507)
Q Consensus 303 --~~~~l~~~~-d~~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~--- 373 (507)
+++++++++ |+.|++||++.+... .....+.+|...|.+++|+|++ ..++++++. |+.|++||+++++.
T Consensus 169 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~ 246 (379)
T 3jrp_A 169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ--DRTCIIWTQDNEQGPWK 246 (379)
T ss_dssp -CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET--TSCEEEEEESSTTSCCE
T ss_pred CCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC--CCEEEEEeCCCCCccce
Confidence 689999999 699999999876221 2345677899999999999993 356666654 99999999988742
Q ss_pred eeeee---cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE
Q psy8285 374 KCHVK---TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL 416 (507)
Q Consensus 374 ~~~~~---~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~ 416 (507)
...+. +...+.+++|+|++++|++ ++.||.|++|++.....
T Consensus 247 ~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 247 KTLLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKENLEGK 290 (379)
T ss_dssp EEESSSSCCSSCEEEEEECSSSCCEEE--EESSSSEEEEEEEETTE
T ss_pred eeeeccccCCCcEEEEEEcCCCCEEEE--ecCCCcEEEEeCCCCCc
Confidence 12222 3368999999999999999 77899999999975443
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-31 Score=245.18 Aligned_cols=224 Identities=10% Similarity=0.045 Sum_probs=168.5
Q ss_pred EEEEEcCCeEEEEE---------CCCCceeEEEecCCCCCCceEEEEEcc--CCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 178 TLAVALDTSVYTWN---------TKTNKTQLLVEYPTYDNAYISCVAWKP--RTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 178 ~~~~~~~~~i~iw~---------~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
+++++.|+.|++|+ ..+++........ |...|.+++|+| ++++++++ +.||.|++||+.+++....
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~~~~ 164 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD--SANEIIYMYGHNEVNTEYFIWA-DNRGTIGFQSYEDDSQYIV 164 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC--CSSCEEEEECCC---CCEEEEE-ETTCCEEEEESSSSCEEEE
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC--CCCCEEEEEcCCCCCCCEEEEE-eCCCcEEEEECCCCcEEEE
Confidence 55555666666665 4455544444432 778899999999 99999999 9999999999999988776
Q ss_pred Eee-cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeec-CCCceEEEEEcCCCCEEEEEeCCcEEEEEcCC
Q psy8285 247 LRT-HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITR-EGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQ 322 (507)
Q Consensus 247 ~~~-~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~ 322 (507)
... +...+.+++| ++.+|++|+.||.|++||+++++.....+.. |...|.+++|+|++++|++++++.|++||+++
T Consensus 165 ~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~ 244 (343)
T 3lrv_A 165 HSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRK 244 (343)
T ss_dssp ECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTS
T ss_pred EecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCC
Confidence 644 5568999999 7899999999999999999998754366777 99999999999999999999988999999998
Q ss_pred CCCCCCeeeecCCCCCee--EEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECC---CCCeEEE
Q psy8285 323 LDAKRPQVNNQCHLSAVK--AIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSE---QYRELVT 397 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~~ 397 (507)
......+..+..|...+. +++|+|+++++++.+++ |+.+++|++.+....... .++..+.|.| +.+.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~--d~~i~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 245 DVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE--SNSLTIYKFDKKTKNWTK---DEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp STTCBSSCCCBC-----CCEEEEECTTSSEEEEEETT--TTEEEEEEECTTTCSEEE---EEEEECCC----CCCCEEEE
T ss_pred CCcceeecccccccccccceEEEECCCCCEEEEecCC--CCcEEEEEEcccccceEe---cCceeEecCccccccceeEE
Confidence 733333333333444444 69999999766665544 899999999766543333 4577888988 8888988
Q ss_pred EeccCCCeEEEEeC
Q psy8285 398 SHGKQDCSLKMWEY 411 (507)
Q Consensus 398 ~~g~~d~~i~v~d~ 411 (507)
++.|+.+.++-.
T Consensus 320 --~~~d~~~~~~~~ 331 (343)
T 3lrv_A 320 --VCGDGGIAAILK 331 (343)
T ss_dssp --EEETTEEEEEEE
T ss_pred --EecCCceEEEEe
Confidence 678888888753
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-30 Score=241.21 Aligned_cols=249 Identities=16% Similarity=0.269 Sum_probs=201.6
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCce--eEEEecCCCCCCceEEEEEcc--CCCeEEEEeCCCCcEEEEeC
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKT--QLLVEYPTYDNAYISCVAWKP--RTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~dg~i~iwd~ 238 (507)
...|.+++|+|++ +++++.|+.|++|++.++.. .....+.+ |...|.+++|+| ++++|+++ +.||.|++||+
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~d~~~l~s~-~~dg~v~vwd~ 88 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRA-HDSSIVAIDWASPEYGRIIASA-SYDKTVKLWEE 88 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEEC-CSSCEEEEEECCGGGCSEEEEE-ETTSCEEEEEE
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceecc-CCCcEEEEEEcCCCCCCEEEEE-cCCCeEEEEec
Confidence 3458999999987 66677999999999986532 23444555 999999999999 58899998 99999999999
Q ss_pred CCc---------eeEEEEeecCccEEEEEe--e--CCEEEEEecCCeEEEEECCCCCcCcee------------eecCCC
Q psy8285 239 QEE---------RLIQKLRTHMHQVIAMCW--N--GNLLSCGTIGGNILHYDVRTHSDYPTA------------ITREGD 293 (507)
Q Consensus 239 ~~~---------~~~~~~~~~~~~v~~~~~--~--~~~l~~~~~dg~i~i~d~~~~~~~~~~------------~~~~~~ 293 (507)
.++ +.+..+..|...|.+++| + +++|++++.||.|++||+++.+..... ...+..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQ 168 (351)
T ss_dssp CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSC
T ss_pred CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCccc
Confidence 887 567888899999999999 4 889999999999999999887632211 125778
Q ss_pred ceEEEEEcCC---CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCC---cEEEEEccCCCCeEEEE
Q psy8285 294 VVCGLKWSPN---GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEP---TLLATGGGICDQTVRLW 366 (507)
Q Consensus 294 ~v~~~~~~~~---~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~d~~i~i~ 366 (507)
.+.+++|+|+ +.++++++ ++.+.+|+...+ ....+..+.+|...|++++|+|++. .++++++. |+.|++|
T Consensus 169 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~--dg~i~iw 245 (351)
T 3f3f_A 169 SDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG-KLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK--DGRIRIF 245 (351)
T ss_dssp CCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS-CEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET--TSCEEEE
T ss_pred ceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC-ceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC--CCeEEEE
Confidence 8999999997 88999998 588877766654 1223677788999999999999973 56666664 9999999
Q ss_pred eCCCC----------------------------------------------CeeeeeecC-CCeEEEEECCCCCeEEEEe
Q psy8285 367 NSMNG----------------------------------------------KEKCHVKTD-SQVTSILWSEQYRELVTSH 399 (507)
Q Consensus 367 d~~~~----------------------------------------------~~~~~~~~~-~~i~~~~~s~~~~~l~~~~ 399 (507)
|++.+ +.+..+..+ ..|++++|+|++++|++
T Consensus 246 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-- 323 (351)
T 3f3f_A 246 KITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS-- 323 (351)
T ss_dssp EEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE--
T ss_pred eCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE--
Confidence 99875 344555555 68999999999999999
Q ss_pred ccCCCeEEEEeCCCccEEEEe
Q psy8285 400 GKQDCSLKMWEYPRLHLIEEL 420 (507)
Q Consensus 400 g~~d~~i~v~d~~~~~~~~~~ 420 (507)
++.||.|++||+.+++.+..+
T Consensus 324 ~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 324 AGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp EETTSCEEEEEECTTSCEEEE
T ss_pred ecCCCcEEEEecCcCcchhhe
Confidence 889999999999987655544
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-30 Score=250.49 Aligned_cols=281 Identities=11% Similarity=0.068 Sum_probs=218.7
Q ss_pred eeeCCCC--EEEEEcCCeEEEEEC--CCCceeEEEecCCCCCCceEEEEEcc----CCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 171 LDWGYHD--TLAVALDTSVYTWNT--KTNKTQLLVEYPTYDNAYISCVAWKP----RTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 171 ~~~s~~~--~~~~~~~~~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
++++|++ +++++.++.|.+||+ .+++....+. +...+..++|+| +|+++++++..+++|.+||..+++
T Consensus 184 v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~----~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 184 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK----IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE----CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe----cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 5556665 666778899999999 7777665554 445689999999 999999984468999999999999
Q ss_pred eEEEEeec----------C-ccEEEEEe--e-CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEE
Q psy8285 243 LIQKLRTH----------M-HQVIAMCW--N-GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLA 308 (507)
Q Consensus 243 ~~~~~~~~----------~-~~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 308 (507)
++..+..+ . ..+..+.+ + +.++++...++.|.+||+.+.+........+...+.++.|+|++++++
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~ 339 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFM 339 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEE
T ss_pred cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEE
Confidence 98887642 2 26788888 3 456777778899999999876533322334566788899999999887
Q ss_pred EEe--CCcEEEEEcCCCCCCCCeeeecC----CCCCeeEEEEccCCCcEEEEEc-cCCCCeEEEEeCCC-------CCee
Q psy8285 309 SGS--NNTVKIWDFRQLDAKRPQVNNQC----HLSAVKAIAWCPWEPTLLATGG-GICDQTVRLWNSMN-------GKEK 374 (507)
Q Consensus 309 ~~~--d~~i~i~d~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~-------~~~~ 374 (507)
+++ +++|.+||..++ +.+..+.. |.+....+ ++|++..+++++. + |++|.+||+.+ .+++
T Consensus 340 va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~--d~~V~v~d~~~~~~~~~~~~~v 413 (543)
T 1nir_A 340 TAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLG--DGSISLIGTDPKNHPQYAWKKV 413 (543)
T ss_dssp EEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSS--SSEEEEEECCTTTCTTTBTSEE
T ss_pred EEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCC--CceEEEEEeCCCCCchhcCeEE
Confidence 766 499999999987 55555543 54443333 5787667777764 3 89999999998 8889
Q ss_pred eeeecC-CCeEEEEECCCCCeEEEEecc-------CCCeEEEEeCCCccEE-EEe--------eccccceeEEEECCCCC
Q psy8285 375 CHVKTD-SQVTSILWSEQYRELVTSHGK-------QDCSLKMWEYPRLHLI-EEL--------KIHQERILSAVLSPDQT 437 (507)
Q Consensus 375 ~~~~~~-~~i~~~~~s~~~~~l~~~~g~-------~d~~i~v~d~~~~~~~-~~~--------~~~~~~i~~~~~s~~~~ 437 (507)
+.+..+ ..+..++++|++++|++ ++ .+++|.+||+.+++.. ..+ ..+...+..++|+|+|+
T Consensus 414 ~~l~~~g~~~~~v~~~pdg~~l~v--~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~ 491 (543)
T 1nir_A 414 AELQGQGGGSLFIKTHPKSSHLYV--DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD 491 (543)
T ss_dssp EEEECSCSCCCCEECCTTCCEEEE--CCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSS
T ss_pred EEEEcCCCCceEEEcCCCCCcEEE--ecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCC
Confidence 999877 56788999999999999 44 2679999999998876 443 34567899999999999
Q ss_pred EEEEEe-----CCCcEEEEecCCCCccccee
Q psy8285 438 CVAAAS-----ADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 438 ~l~s~~-----~dg~i~iw~~~~~~~~~~~~ 463 (507)
.++++. .|+.|.|||..+.+.+..++
T Consensus 492 ~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 492 EVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred EEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 988663 47999999999998877655
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=273.88 Aligned_cols=247 Identities=18% Similarity=0.341 Sum_probs=207.8
Q ss_pred cCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC--CceeEEEEeecCccEEEEEe--e--CCEEEEEecCCeEEEE
Q psy8285 203 YPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ--EERLIQKLRTHMHQVIAMCW--N--GNLLSCGTIGGNILHY 276 (507)
Q Consensus 203 ~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~--~--~~~l~~~~~dg~i~i~ 276 (507)
+.+ |.+.|++++|+|++++|+++ +.||.|++||+. +++.+..+.+|..+|.+++| + +++|++++.||.|++|
T Consensus 5 l~g-H~~~V~~l~~s~dg~~latg-~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 5 ANA-HNELIHDAVLDYYGKRLATC-SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEE-ETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred ccc-CcceeEEEEECCCCCeEEEE-ECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 345 99999999999999999999 899999999998 56778888999999999999 3 8899999999999999
Q ss_pred ECCCCC-cCceeeecCCCceEEEEEcCC--CCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccC-----
Q psy8285 277 DVRTHS-DYPTAITREGDVVCGLKWSPN--GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW----- 347 (507)
Q Consensus 277 d~~~~~-~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~----- 347 (507)
|+.++. .....+..|...|.+++|+|+ ++++++++ |+.|++||++.... .....+.+|...|.+++|+|.
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~-~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-TSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC-CCCEEEECCSSCEEEEEECCCC----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC-cceeEeecCCCceEEEEecCcccccc
Confidence 998764 135566789999999999999 99999999 69999999987633 234456679999999999994
Q ss_pred --------CCcEEEEEccCCCCeEEEEeCCCCC----eeeeeecC-CCeEEEEECCC---CCeEEEEeccCCCeEEEEeC
Q psy8285 348 --------EPTLLATGGGICDQTVRLWNSMNGK----EKCHVKTD-SQVTSILWSEQ---YRELVTSHGKQDCSLKMWEY 411 (507)
Q Consensus 348 --------~~~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~-~~i~~~~~s~~---~~~l~~~~g~~d~~i~v~d~ 411 (507)
+..++ +++. |+.|++||++++. ....+..+ ..|.+++|+|+ ++++++ ++.||.|++||+
T Consensus 162 ~~~~~~~d~~~l~-sgs~--dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s--~s~Dg~I~iwd~ 236 (753)
T 3jro_A 162 GEHNGTKESRKFV-TGGA--DNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCIIWTQ 236 (753)
T ss_dssp -----CGGGCCEE-EEET--TSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EESSSCEEEEEE
T ss_pred cccccCCCCCEEE-EEEC--CCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE--EecCCEEEEecC
Confidence 54444 4444 9999999998874 44455555 78999999999 888988 789999999999
Q ss_pred CCcc-----EEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 412 PRLH-----LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 412 ~~~~-----~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
.+++ .+.....|...|++++|+|++++|++++.||.|++|++.+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 8864 333445688899999999999999999999999999998644
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-32 Score=255.11 Aligned_cols=255 Identities=11% Similarity=0.092 Sum_probs=200.3
Q ss_pred ceeeeeeCCCC-E-EEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 167 YTSGLDWGYHD-T-LAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 167 ~i~~~~~s~~~-~-~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.|.+++||||| + ++++.|++|+ |...++.. .+ |...|.+++|+|+| .++.+.+|+.+... .
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l-----~g-h~~~v~~V~FsPdg--------~~~~~~~~~~~~~~-~ 79 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI-----NC-NSKNLFHVKEFPLE--------FENKLDFELAQQNG-L 79 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEE--EECCCSCC-----SS-BGGGTEEEEEECCC--------CCCTTTTSCCCSSC-S
T ss_pred cEEEEEECCCCCEEEEEcCCceee--ccccccee-----cC-CCccEEEEEECCCC--------CcceEEEEeCCCce-E
Confidence 47789999999 4 4456888998 75555422 45 99999999999998 46666666543222 2
Q ss_pred EEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCC-----ceEEEEEcCCCCEEEEEe-CCcEE
Q psy8285 245 QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGD-----VVCGLKWSPNGRYLASGS-NNTVK 316 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~-d~~i~ 316 (507)
..+ .|...|.+++| +|+.||+++.||.|++||... ....+. |.. .+.+++|||||++|++|+ ||+|+
T Consensus 80 ~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 80 LNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp STT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred eec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 122 45788999999 799999999999999999543 344444 554 599999999999999999 69999
Q ss_pred EEEcCCCCCCC----Ceeee----cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCee---eeee-cC-CCe
Q psy8285 317 IWDFRQLDAKR----PQVNN----QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK---CHVK-TD-SQV 383 (507)
Q Consensus 317 i~d~~~~~~~~----~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~---~~~~-~~-~~i 383 (507)
+||+..+.... .+.++ .+|...|.+++|+|+| +++++. |++|++||+.+++.. ..+. .+ ..|
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~---D~tVrlWd~~~~~~~~~~~tL~~~h~~~V 229 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS---NNSVFSMTVSASSHQPVSRMIQNASRRKI 229 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET---TCCEEEECCCSSSSCCCEEEEECCCSSCC
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC---CCeEEEEECCCCccccceeeecccccCcE
Confidence 99998862211 24554 6678899999999998 555554 999999999887742 4553 44 689
Q ss_pred EEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEE--CCCCCEEEEEeCCCcEEEEecC
Q psy8285 384 TSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVL--SPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 384 ~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
.+++|+ |+.|++ ++ ++.|++||+.+++......+|...|..++| +|++..|++++.||+ ++|...
T Consensus 230 ~svaFs--g~~LAS--a~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 230 TDLKIV--DYKVVL--TC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCEEEE--TTEEEE--EC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEEE--CCEEEE--Ee-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 999999 688888 44 699999999987774444489999999999 999999999999999 999985
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-30 Score=239.10 Aligned_cols=251 Identities=10% Similarity=0.104 Sum_probs=182.3
Q ss_pred EEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEeeCCEE-EEE
Q psy8285 189 TWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLL-SCG 267 (507)
Q Consensus 189 iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l-~~~ 267 (507)
+|++.+.+... ...+ |...|.+++|+|++++|+++ +.+ .+++||+.+++.......+...+..+.++++.+ +++
T Consensus 3 i~s~~~~~~~~--~~~~-h~~~V~~v~fs~dg~~la~g-~~~-~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (355)
T 3vu4_A 3 LGSMITRNPIV--PENH-VSNPVTDYEFNQDQSCLILS-TLK-SFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVT 77 (355)
T ss_dssp -------------------CCCCCEEEECTTSSEEEEE-CSS-EEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEEC
T ss_pred cccccccCCcc--cccc-CCCceEEEEECCCCCEEEEE-cCC-EEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEE
Confidence 34444444332 2344 89999999999999999988 655 478999998776655443333334444466666 567
Q ss_pred ecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccC
Q psy8285 268 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW 347 (507)
Q Consensus 268 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 347 (507)
+.|+.|++||+.+++ ....+. +...|.+++|+++ .++++.++.|++||+.+. .+.+..+.. +...+++++
T Consensus 78 ~~d~~v~iWd~~~~~-~~~~~~-~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~--~~~~~~~~~---~~~~~~~s~- 147 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQ-DVSRIK-VDAPVKDLFLSRE--FIVVSYGDVISVFKFGNP--WKRITDDIR---FGGVCEFSN- 147 (355)
T ss_dssp SSTTEEEEEETTTTE-EEEEEE-CSSCEEEEEECSS--EEEEEETTEEEEEESSTT--CCBSSCCEE---EEEEEEEET-
T ss_pred CCccEEEEEECCCCc-EEEEEE-CCCceEEEEEcCC--EEEEEEcCEEEEEECCCC--ceeeEEecc---CCceEEEEc-
Confidence 788999999999876 334443 6778999999876 466667899999999875 123333332 445566777
Q ss_pred CCcEEEEEccCCCCeEEEEeCCCCC----------------eeeeeecC-CCeEEEEECCCCCeEEEEeccCCCe-EEEE
Q psy8285 348 EPTLLATGGGICDQTVRLWNSMNGK----------------EKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCS-LKMW 409 (507)
Q Consensus 348 ~~~~~~~~~~~~d~~i~i~d~~~~~----------------~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~-i~v~ 409 (507)
..++++ ++..||.|++||+.+++ .+..+..| ..|.+++|+|++++|++ ++.|+. |++|
T Consensus 148 -~~la~~-sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s--~s~d~~~v~iw 223 (355)
T 3vu4_A 148 -GLLVYS-NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT--CSQDGTIIRVF 223 (355)
T ss_dssp -TEEEEE-ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEE--EETTCSEEEEE
T ss_pred -cEEEEe-CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEE--EeCCCCEEEEE
Confidence 344443 22359999999999865 15666666 78999999999999999 889998 9999
Q ss_pred eCCCccEEEEee-c-cccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 410 EYPRLHLIEELK-I-HQERILSAVLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 410 d~~~~~~~~~~~-~-~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
|+++++++..+. + |...|++++|+|++++|++++.|++|++||+.....
T Consensus 224 d~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~ 274 (355)
T 3vu4_A 224 KTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD 274 (355)
T ss_dssp ETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSC
T ss_pred ECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCC
Confidence 999999999998 5 999999999999999999999999999999987643
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-31 Score=251.50 Aligned_cols=245 Identities=12% Similarity=0.055 Sum_probs=176.0
Q ss_pred EEEEEcCCeEEEEECCCCceeE---EEecCCCCCCceEEEEEcc--------CCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQL---LVEYPTYDNAYISCVAWKP--------RTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~---~~~~~~~~~~~v~~~~~~~--------~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
+++++.|++|++||..+++... ...+.| |.+.|.+++|+| ++++|+++ +.|++|+|||+.++..+..
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~g-H~~~v~~v~~~p~~~~~~~~d~~~las~-s~D~tv~~Wd~~~~~~~~~ 181 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQHVLGGKSG-HHNFVNDIDIADVYSADNRLAEQVIASV-GDDCTLIIWRLTDEGPILA 181 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECTTTS-CSSCEEEEEEEEEECTTCSEEEEEEEEE-ETTSEEEEEEEETTEEEEE
T ss_pred EEEEeCCCcEEEEECCCCccceeeeecccCC-CCCceEEEEEccccccccCCCCCEEEEE-ECCCeEEEEECCCCceeee
Confidence 5567799999999999887543 234667 999999999998 78899998 9999999999999888888
Q ss_pred EeecCccEEEEEee---CCEEEEEecCCeEEEEECCCCCcCce------------------------eeecCCCceEEEE
Q psy8285 247 LRTHMHQVIAMCWN---GNLLSCGTIGGNILHYDVRTHSDYPT------------------------AITREGDVVCGLK 299 (507)
Q Consensus 247 ~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~------------------------~~~~~~~~v~~~~ 299 (507)
+..|...+.+++|. +.+|++++.|++|++||+++++.... ...+|...+.++.
T Consensus 182 ~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~ 261 (393)
T 4gq1_A 182 GYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVR 261 (393)
T ss_dssp EEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEE
T ss_pred ecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeee
Confidence 88999999999993 45899999999999999987642111 1235677788899
Q ss_pred Ec-CCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeee
Q psy8285 300 WS-PNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHV 377 (507)
Q Consensus 300 ~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 377 (507)
|+ |+++.+++++ |+++++||+..+ +....+..|...+..+.+.|+.... ..
T Consensus 262 ~~~~dg~~l~s~s~d~~i~vwd~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~-~~----------------------- 314 (393)
T 4gq1_A 262 WIGSDGSGILAMCKSGAWLRWNLFAN---NDYNEISDSTMKLGPKNLLPNVQGI-SL----------------------- 314 (393)
T ss_dssp EETTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEE-CS-----------------------
T ss_pred eecCCCCEEEEEeCCCCEEEEECccC---CCCceEeeecCccccEEEccccccc-cc-----------------------
Confidence 87 7999999999 699999999887 5556666677777777766654211 10
Q ss_pred ecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 378 KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 378 ~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
....+..+.+.+.+..++++ |+.||.|++||+.+++++..+..|..+|++++|+|||++||+++.+| +.+|.+.
T Consensus 315 -~~~~~~~~~~~~~~~~~~~s-gs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 315 -FPSLLGACPHPRYMDYFATA-HSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp -SCCSSCCEECSSCTTEEEEE-ETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred -cCcceeEEEccCCCCEEEEE-ECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 00112222233344444443 88999999999999999888888999999999999999999999776 6667654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.4e-30 Score=248.66 Aligned_cols=258 Identities=12% Similarity=0.047 Sum_probs=206.3
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce---eEEEEee------------------------------------
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER---LIQKLRT------------------------------------ 249 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~---~~~~~~~------------------------------------ 249 (507)
.++.+++|+|+|++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~--~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI--IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSSSSEEEEE--ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE--eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 468899999999966655 68899999999888 5555543
Q ss_pred ------------------cCccEEEEEe--eCCEE-EEEecCCeEEEEECC--CCCcCceeee--cCCCceEEEEEcCCC
Q psy8285 250 ------------------HMHQVIAMCW--NGNLL-SCGTIGGNILHYDVR--THSDYPTAIT--REGDVVCGLKWSPNG 304 (507)
Q Consensus 250 ------------------~~~~v~~~~~--~~~~l-~~~~~dg~i~i~d~~--~~~~~~~~~~--~~~~~v~~~~~~~~~ 304 (507)
|...|.+++| ++++| ++++.||.|++||+. ++. ....+. .+...|++++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-VLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-CEEEEEEEECSSCEEEEEECTTS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-eeeeeecccCCCCceEEEEcCCC
Confidence 2236999999 67885 889999999999998 554 444444 677899999999999
Q ss_pred CEEEEEe-CCcEEEEEcCCCCCCC-CeeeecCCCCCeeEEEEccC---CCcEEEEEccCCCCeEEEEeCCCCCeeeeee-
Q psy8285 305 RYLASGS-NNTVKIWDFRQLDAKR-PQVNNQCHLSAVKAIAWCPW---EPTLLATGGGICDQTVRLWNSMNGKEKCHVK- 378 (507)
Q Consensus 305 ~~l~~~~-d~~i~i~d~~~~~~~~-~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~- 378 (507)
++|++++ ++.|++|++..+.... ....+.+|...|.+++|+|+ + .++++++. |+.|++||+++++.+..+.
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~--d~~i~vwd~~~~~~~~~~~~ 238 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDR--DEHIKISHYPQCFIVDKWLF 238 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEET--TSCEEEEEESCTTCEEEECC
T ss_pred CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcC--CCcEEEEECCCCceeeeeec
Confidence 9999999 5999999998874333 44467789999999999999 6 45555554 9999999999998887633
Q ss_pred cC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc-------------------------ccceeEEEE
Q psy8285 379 TD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH-------------------------QERILSAVL 432 (507)
Q Consensus 379 ~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~-------------------------~~~i~~~~~ 432 (507)
.+ ..|.+++|+ ++++|++ ++.|+.|++||+.+++++..+..+ ...|.+++|
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s--~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~ 315 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLS--AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIK 315 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEE--EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEE
T ss_pred CCCCceEEEEEC-CCCEEEE--EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEE
Confidence 44 789999999 9999999 789999999999999988887632 346899999
Q ss_pred CCCCCEEEEEe-CCCcEEEEec--CCC---CcccceeecCCCcceEEee
Q psy8285 433 SPDQTCVAAAS-ADETISIWNC--FPR---DKKRKARQVGSGSSLEFAI 475 (507)
Q Consensus 433 s~~~~~l~s~~-~dg~i~iw~~--~~~---~~~~~~~~~~~~~~~~~~~ 475 (507)
+|++++|++++ .|+.|++|++ .+. +....+.....+.++.|.+
T Consensus 316 ~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~ 364 (450)
T 2vdu_B 316 SKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHN 364 (450)
T ss_dssp CSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEET
T ss_pred eCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecC
Confidence 99999999998 8999999999 444 3333333334555666665
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-30 Score=241.92 Aligned_cols=255 Identities=11% Similarity=0.054 Sum_probs=199.7
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC---------CceeEEEEe
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ---------EERLIQKLR 248 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~---------~~~~~~~~~ 248 (507)
+++++.|+.|++||+.+++....+. ...|.++.|+|+ ++++ +.|+.|++|+.. +++.+..+.
T Consensus 51 l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~-s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 51 CMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISR-GPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEE-CSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEe-cCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 7778899999999999988765554 245778888887 7777 999999999765 444444444
Q ss_pred -ecCccEEEEEe----eCCEEEEEecCCeEEEEECCCCCcCceee-ecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcC
Q psy8285 249 -THMHQVIAMCW----NGNLLSCGTIGGNILHYDVRTHSDYPTAI-TREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR 321 (507)
Q Consensus 249 -~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~ 321 (507)
.|..+|.+++| +++++++++.||.|++||+++++. .... ..+...+.+++|+|++++|++|+ |+.|++||++
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~ 200 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLS 200 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESS
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 57788999999 468999999999999999998763 3333 34566799999999999999988 6999999999
Q ss_pred CCCCCCCe-eeecC-CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec---C-CCe--EEEEECCCCC
Q psy8285 322 QLDAKRPQ-VNNQC-HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT---D-SQV--TSILWSEQYR 393 (507)
Q Consensus 322 ~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---~-~~i--~~~~~s~~~~ 393 (507)
++ +.. ..+.. |..+|++++|+|++. ++++++ ++.|++||+++++....+.. + ..+ .+++|+|+++
T Consensus 201 ~~---~~~~~~~~~~h~~~v~~l~fs~~g~-~l~s~~---~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (343)
T 3lrv_A 201 SP---DQASSRFPVDEEAKIKEVKFADNGY-WMVVEC---DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK 273 (343)
T ss_dssp CT---TSCCEECCCCTTSCEEEEEECTTSS-EEEEEE---SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS
T ss_pred CC---CCCccEEeccCCCCEEEEEEeCCCC-EEEEEe---CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCC
Confidence 87 555 66776 999999999999985 555555 55999999999887665543 1 222 4699999999
Q ss_pred eEEEEeccC-CCeEEEEeCCCccEEEEeeccccceeEEEECC---CCCEEEEEeCCCcEEEEecCC
Q psy8285 394 ELVTSHGKQ-DCSLKMWEYPRLHLIEELKIHQERILSAVLSP---DQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 394 ~l~~~~g~~-d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~---~~~~l~s~~~dg~i~iw~~~~ 455 (507)
+|++ ++. |+.|++|++.+....... .++..+.|++ +.+.+++++.||.+.++-...
T Consensus 274 ~l~~--~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 274 NMIA--YSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEEE--EETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EEEE--ecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 9999 555 999999999766543333 5678889998 888999999999999886543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-29 Score=221.40 Aligned_cols=275 Identities=9% Similarity=0.036 Sum_probs=192.6
Q ss_pred eeeeeeCCCC----EEEEEcCCeEEEEECCCC-ceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC---CcEEEEeCC
Q psy8285 168 TSGLDWGYHD----TLAVALDTSVYTWNTKTN-KTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT---EYIDLWHEQ 239 (507)
Q Consensus 168 i~~~~~s~~~----~~~~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d---g~i~iwd~~ 239 (507)
+.++-|-..+ .+..+....|++|+..++ +..+..+..+ |..+|..+.+.|+...|+..+-.+ +.|+..-+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s 120 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHF-AEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS 120 (356)
T ss_dssp EEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEEC-CSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred EeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEec-cCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence 5667775543 455567889999999987 2344555555 888999999999765555431111 112222111
Q ss_pred Cc----eeEEEEeecCccEEEEEeeCCEEEEEe--cCCeEEEEECCCCCcCceeeecCCCceEEEEEcC---CCCEEEEE
Q psy8285 240 EE----RLIQKLRTHMHQVIAMCWNGNLLSCGT--IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP---NGRYLASG 310 (507)
Q Consensus 240 ~~----~~~~~~~~~~~~v~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~ 310 (507)
.. .......+|...+..+ -+++++.+++ .|+.|++|++.........+..|...++.++|+| ++.+|+++
T Consensus 121 pd~~~~~~~l~s~g~~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg 199 (356)
T 2w18_A 121 SDDESEKQVLLKSGNIKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT 199 (356)
T ss_dssp -----CCEEEEEEEEEEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred CCccccccEEEeCCCeEEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence 11 1222223444445443 1444454433 5999999999654445667778999999999999 78999999
Q ss_pred e-CCcEEEEEcCCCCCCCCeeeecCCC---CCeeEEEEccCCCcEE-----------EEEccCCCCeEEEEeCCCCCeee
Q psy8285 311 S-NNTVKIWDFRQLDAKRPQVNNQCHL---SAVKAIAWCPWEPTLL-----------ATGGGICDQTVRLWNSMNGKEKC 375 (507)
Q Consensus 311 ~-d~~i~i~d~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~-----------~~~~~~~d~~i~i~d~~~~~~~~ 375 (507)
+ |++|+|||++++ +.+.++.+|. ..+.+++|+|++..++ +++ +.|++|++||..+++.+.
T Consensus 200 S~D~TIkIWDl~TG---k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSG--s~D~tIklWd~~tgk~l~ 274 (356)
T 2w18_A 200 TIMNNIVIWNLKTG---QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLR--SPVFQLIVINPKTTLSVG 274 (356)
T ss_dssp ETTSEEEEEETTTC---CEEEEEECCC---CCCEEEEEEETTEEEEEEC--------------CCEEEEEEETTTTEEEE
T ss_pred cCCCcEEEEECCCC---cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeecc--CCCcEEEEEECCCCEEEE
Confidence 9 799999999998 7888887654 3677889999986543 333 459999999999998876
Q ss_pred eee-----cC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecccccee-EEEECCCCCEEEEEeCCCcE
Q psy8285 376 HVK-----TD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERIL-SAVLSPDQTCVAAASADETI 448 (507)
Q Consensus 376 ~~~-----~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~s~~~dg~i 448 (507)
.+. ++ ..+.+..++ +..+++ ++.|++|+|||+.+++.+.++.+|...+. .++|+|||++|++|+.|++|
T Consensus 275 v~~~~~p~Gh~~~~lsg~~s--g~~lAS--gS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TI 350 (356)
T 2w18_A 275 VMLYCLPPGQAGRFLEGDVK--DHCAAA--ILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNI 350 (356)
T ss_dssp EEEECCCTTCCCCEEEEEEE--TTEEEE--EETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred EEEeeccCCCcceeEccccC--CCEEEE--EcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence 552 22 234333333 667777 88999999999999999999999987655 58999999999999999999
Q ss_pred EEEec
Q psy8285 449 SIWNC 453 (507)
Q Consensus 449 ~iw~~ 453 (507)
+|||+
T Consensus 351 klWd~ 355 (356)
T 2w18_A 351 FVYHY 355 (356)
T ss_dssp EEEEE
T ss_pred EEecC
Confidence 99996
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=243.65 Aligned_cols=242 Identities=17% Similarity=0.308 Sum_probs=198.2
Q ss_pred ccceeeeeeCCC-C--EEEEEcCCeEEEEECCC--------CceeEEEecCCCCCCceEEEEEccCCC-eEEEEeCCCCc
Q psy8285 165 DFYTSGLDWGYH-D--TLAVALDTSVYTWNTKT--------NKTQLLVEYPTYDNAYISCVAWKPRTT-DLAVTNTCTEY 232 (507)
Q Consensus 165 ~~~i~~~~~s~~-~--~~~~~~~~~i~iw~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~dg~ 232 (507)
...|++++|+|+ + +++++.+|.|++|++.. +.......+.+ |...|.+++|+|++. +|+++ +.||.
T Consensus 128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~-~~dg~ 205 (430)
T 2xyi_A 128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRG-HQKEGYGLSWNPNLNGYLLSA-SDDHT 205 (430)
T ss_dssp SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEEC-CSSCCCCEEECTTSTTEEEEE-CTTSC
T ss_pred CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecC-CCCCeEEEEeCCCCCCeEEEE-eCCCe
Confidence 345888999997 3 44456899999999976 22333444455 899999999999998 88888 99999
Q ss_pred EEEEeCCCcee-------EEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCC--cCceeeecCCCceEEEEE
Q psy8285 233 IDLWHEQEERL-------IQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHS--DYPTAITREGDVVCGLKW 300 (507)
Q Consensus 233 i~iwd~~~~~~-------~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~ 300 (507)
|++||+.++.. ...+..|...|.+++| ++.+|++++.||.|++||+++.. .....+..|...|++++|
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 285 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEE
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEe
Confidence 99999987322 4566789999999999 47899999999999999999863 356677789999999999
Q ss_pred cCCCC-EEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC--------
Q psy8285 301 SPNGR-YLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-------- 370 (507)
Q Consensus 301 ~~~~~-~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-------- 370 (507)
+|+++ ++++++ |+.|++||++.. ..++..+..|...|.+++|+|+++.++++++. |+.|++||+..
T Consensus 286 ~p~~~~~l~tg~~dg~v~vwd~~~~--~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~ 361 (430)
T 2xyi_A 286 NPYSEFILATGSADKTVALWDLRNL--KLKLHSFESHKDEIFQVQWSPHNETILASSGT--DRRLHVWDLSKIGEEQSTE 361 (430)
T ss_dssp CSSCTTEEEEEETTSEEEEEETTCT--TSCSEEEECCSSCEEEEEECSSCTTEEEEEET--TSCCEEEEGGGTTCCCCHH
T ss_pred CCCCCCEEEEEeCCCeEEEEeCCCC--CCCeEEeecCCCCEEEEEECCCCCCEEEEEeC--CCcEEEEeCCCCccccCcc
Confidence 99987 688888 699999999974 15677888899999999999999888888775 99999999987
Q ss_pred ------CCeeeeeecC-CCeEEEEECCCCC-eEEEEeccCCCeEEEEeCCCc
Q psy8285 371 ------GKEKCHVKTD-SQVTSILWSEQYR-ELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 371 ------~~~~~~~~~~-~~i~~~~~s~~~~-~l~~~~g~~d~~i~v~d~~~~ 414 (507)
.+.+..+..+ ..|.+++|+|+++ ++++ ++.||.|++|++...
T Consensus 362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s--~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE--EETTSEEEEEEECHH
T ss_pred ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEE--EECCCCEEEeEcccc
Confidence 2445555555 5799999999999 5666 789999999998653
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-29 Score=239.69 Aligned_cols=282 Identities=8% Similarity=0.067 Sum_probs=221.7
Q ss_pred eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE-----EeecCccEEEEEe-
Q psy8285 186 SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK-----LRTHMHQVIAMCW- 259 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~v~~~~~- 259 (507)
.|+.+|..++.......++ ....+.+++|+|++..++++ +.++.|++||+.+++.... +.+|...+.+++|
T Consensus 102 ~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~~~~~-~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~ 178 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFK--TGFQPKSVRFIDNTRLAIPL-LEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP 178 (433)
T ss_dssp CEEECCBTTCSEEEEEEEE--CSSCBCCCEESSSSEEEEEB-TTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG
T ss_pred EEEEECCCCCcceEEEEEc--CCCCceEEEEeCCCeEEEEe-CCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc
Confidence 5555666555444444443 33456699999955555555 8889999999999988763 3468889999999
Q ss_pred -eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCeeeecCCC
Q psy8285 260 -NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQVNNQCHL 336 (507)
Q Consensus 260 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~ 336 (507)
++.++++++.|+.|++||+++.+ ....+..|...+.+++|+|+++.+++++ ++.|++||++++ +.+..+.. .
T Consensus 179 ~~~~~~~s~~~d~~v~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~---~~~~~~~~-~ 253 (433)
T 3bws_A 179 EHNELWVSQMQANAVHVFDLKTLA-YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK---LEIRKTDK-I 253 (433)
T ss_dssp GGTEEEEEEGGGTEEEEEETTTCC-EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEECCC-C
T ss_pred CCCEEEEEECCCCEEEEEECCCce-EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC---cEEEEecC-C
Confidence 68899999999999999998865 4566667888999999999999886554 599999999886 55555553 4
Q ss_pred CCeeEEEEccCCCcEEEEEccC-----CCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeC
Q psy8285 337 SAVKAIAWCPWEPTLLATGGGI-----CDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEY 411 (507)
Q Consensus 337 ~~v~~~~~~~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~ 411 (507)
..+.+++|+|+++.+++++.+. .|+.|++||+.+++.+..+.....+.+++|+|+++.++++ ++.++.|++||+
T Consensus 254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~~~~v~v~d~ 332 (433)
T 3bws_A 254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVS-DMCCSKIEVYDL 332 (433)
T ss_dssp SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEE-ETTTTEEEEEET
T ss_pred CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEE-ecCCCEEEEEEC
Confidence 5699999999997777766311 2789999999999888877666788999999999877665 678999999999
Q ss_pred CCccEEEEeeccccceeEEEECCCCCEEEEEeC---------------CCcEEEEecCCCCcccceeecCCCcceEEeec
Q psy8285 412 PRLHLIEELKIHQERILSAVLSPDQTCVAAASA---------------DETISIWNCFPRDKKRKARQVGSGSSLEFAIL 476 (507)
Q Consensus 412 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~---------------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (507)
.+++.+..+. +...+.+++|+|++++|++++. ||.|++||+.+++.............+.|.++
T Consensus 333 ~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~d 411 (433)
T 3bws_A 333 KEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPD 411 (433)
T ss_dssp TTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTT
T ss_pred CCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCC
Confidence 9998888776 6778999999999999988876 57999999998887776655444455555554
Q ss_pred c
Q psy8285 477 K 477 (507)
Q Consensus 477 ~ 477 (507)
.
T Consensus 412 g 412 (433)
T 3bws_A 412 N 412 (433)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=259.11 Aligned_cols=245 Identities=19% Similarity=0.309 Sum_probs=204.1
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccC--CCeEEEEeCCCCcEEEEeCCC
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR--TTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~~dg~i~iwd~~~ 240 (507)
...|++++|+|++ +++++.||.|++|++.++.......+.+ |...|++++|+|+ +++|+++ +.||.|++||+.+
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~-h~~~V~~l~~s~~~~~~~l~s~-s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASC-SYDGKVLIWKEEN 86 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECC-CSSCEEEEEECCTTSCSEEEEE-ETTSCEEEEEEET
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccC-CcCceEEEEecCCCCCCEEEEE-eCCCeEEEEECCC
Confidence 3458899999987 7777899999999998766666666777 9999999999988 8999999 9999999999998
Q ss_pred ce--eEEEEeecCccEEEEEe--e--CCEEEEEecCCeEEEEECCCCC-cCceeeecCCCceEEEEEcC-----------
Q psy8285 241 ER--LIQKLRTHMHQVIAMCW--N--GNLLSCGTIGGNILHYDVRTHS-DYPTAITREGDVVCGLKWSP----------- 302 (507)
Q Consensus 241 ~~--~~~~~~~~~~~v~~~~~--~--~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~----------- 302 (507)
++ .+..+..|...|.+++| + ++.+++++.||.|++||+++.. .....+..|...|.+++|+|
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~ 166 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------
T ss_pred CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccccc
Confidence 87 67778889999999999 4 8899999999999999998863 23556778999999999999
Q ss_pred --CCCEEEEEe-CCcEEEEEcCCCCCC-CCeeeecCCCCCeeEEEEccCC--CcEEEEEccCCCCeEEEEeCCCCCe---
Q psy8285 303 --NGRYLASGS-NNTVKIWDFRQLDAK-RPQVNNQCHLSAVKAIAWCPWE--PTLLATGGGICDQTVRLWNSMNGKE--- 373 (507)
Q Consensus 303 --~~~~l~~~~-d~~i~i~d~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~--- 373 (507)
+++++++++ ||.|++||++.+... .....+.+|...|++++|+|++ ..++++++. |+.|++||+++++.
T Consensus 167 ~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~--Dg~I~iwd~~~~~~~~~ 244 (753)
T 3jro_A 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ--DRTCIIWTQDNEQGPWK 244 (753)
T ss_dssp CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES--SSCEEEEEESSSSSCCB
T ss_pred CCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec--CCEEEEecCCCCCCcce
Confidence 588999998 699999999876221 3445677899999999999993 356666654 99999999988742
Q ss_pred --eeeee-cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc
Q psy8285 374 --KCHVK-TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 374 --~~~~~-~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~ 415 (507)
..... +...+.+++|+|+++++++ ++.||.|++||+..+.
T Consensus 245 ~~~~~~~~~~~~v~~l~~spdg~~l~s--~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 245 KTLLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCBSSSSCCSSCCCCEEECTTTCCEEE--ECSSSCEECCBCCSSS
T ss_pred eEEeccCCCCCceEEEEEcCCCCEEEE--EcCCCEEEEEecCCCC
Confidence 12222 3367999999999999999 7889999999998643
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-28 Score=230.48 Aligned_cols=237 Identities=11% Similarity=0.048 Sum_probs=187.9
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCC---cEEEEeCCCceeEEEEeecCccEEEEEe--
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTE---YIDLWHEQEERLIQKLRTHMHQVIAMCW-- 259 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~-- 259 (507)
+.|++||...+....+.. |...+.+++|+|+|++|+++ +.++ .|++||+.+++.. .+..|...+.+++|
T Consensus 159 ~~i~i~d~~g~~~~~l~~----~~~~v~~~~~Spdg~~la~~-s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp 232 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHR----SPQPLMSPAWSPDGSKLAYV-TFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP 232 (415)
T ss_dssp EEEEEEETTSCSCEEEEE----ESSCEEEEEECTTSSEEEEE-ECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT
T ss_pred ceEEEEcCCCCCCEEEeC----CCCcceeeEEcCCCCEEEEE-EecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC
Confidence 799999998655444333 77899999999999999998 6664 9999999988765 56678889999999
Q ss_pred eCCEEE-EEecCCe--EEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC--C--cEEEEEcCCCCCCCCeeee
Q psy8285 260 NGNLLS-CGTIGGN--ILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN--N--TVKIWDFRQLDAKRPQVNN 332 (507)
Q Consensus 260 ~~~~l~-~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--~--~i~i~d~~~~~~~~~~~~~ 332 (507)
|++.|+ +++.++. |++||+.+++ ...+..|...+.+++|+|||+.|+++++ + .|++||+.++ + ...+
T Consensus 233 dg~~la~~~~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~---~-~~~l 306 (415)
T 2hqs_A 233 DGSKLAFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG---A-PQRI 306 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTTCC--EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS---C-CEEC
T ss_pred CCCEEEEEEecCCCceEEEEECCCCC--EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC---C-EEEE
Confidence 688777 5665554 9999998865 4567778889999999999999988873 4 6788888875 3 3445
Q ss_pred cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCC---eEEEE
Q psy8285 333 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDC---SLKMW 409 (507)
Q Consensus 333 ~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~---~i~v~ 409 (507)
..+...+.+++|+|+|+.+++++....+..|++||+.+++... +..+..+.+++|+|+|++|++ ++.++ .|++|
T Consensus 307 ~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~~~~~~~~~spdg~~l~~--~s~~~~~~~l~~~ 383 (415)
T 2hqs_A 307 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSSTFLDETPSLAPNGTMVIY--SSSQGMGSVLNLV 383 (415)
T ss_dssp CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCSSSCEEEEECTTSSEEEE--EEEETTEEEEEEE
T ss_pred ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCCCCcCCeEEcCCCCEEEE--EEcCCCccEEEEE
Confidence 5577789999999999877776652113689999999888744 444458999999999999998 44555 79999
Q ss_pred eCCCccEEEEeeccccceeEEEECCCCC
Q psy8285 410 EYPRLHLIEELKIHQERILSAVLSPDQT 437 (507)
Q Consensus 410 d~~~~~~~~~~~~~~~~i~~~~~s~~~~ 437 (507)
|+. ++....+..|.+.|.+++|+|.-.
T Consensus 384 d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 384 STD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp ETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred ECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 986 556778888999999999999643
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=235.15 Aligned_cols=297 Identities=13% Similarity=0.056 Sum_probs=225.6
Q ss_pred ceeeeeeCCCC--EE-EEE----cCC----eEEEEEC--CCCceeEEEecCCCCCCceEEEEEcc--------------C
Q psy8285 167 YTSGLDWGYHD--TL-AVA----LDT----SVYTWNT--KTNKTQLLVEYPTYDNAYISCVAWKP--------------R 219 (507)
Q Consensus 167 ~i~~~~~s~~~--~~-~~~----~~~----~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~--------------~ 219 (507)
.++..+|++.+ ++ +++ .+| .+++||+ .+++......+.+ |...+..+++++ .
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKV-NKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEE-CGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEc-ChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 35668888876 34 444 467 8999999 8888664444555 777788777765 1
Q ss_pred CCeEEEEeCCC------CcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCC---eEEEEECCCCCcCceee
Q psy8285 220 TTDLAVTNTCT------EYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGG---NILHYDVRTHSDYPTAI 288 (507)
Q Consensus 220 ~~~l~~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~ 288 (507)
+..++.+ +.+ +.|++||+.. .....+..|...+.+++| +++.|++++.++ .|++||+.+++ ...+
T Consensus 143 ~~~l~~~-s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~--~~~l 218 (415)
T 2hqs_A 143 RTRIAYV-VQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQV 218 (415)
T ss_dssp TCEEEEE-EECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEE
T ss_pred CCEEEEE-EecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc--EEEe
Confidence 5566666 333 7999999974 556777889999999999 789999999875 99999999876 3456
Q ss_pred ecCCCceEEEEEcCCCCEEE-EEe-C--CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC--e
Q psy8285 289 TREGDVVCGLKWSPNGRYLA-SGS-N--NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ--T 362 (507)
Q Consensus 289 ~~~~~~v~~~~~~~~~~~l~-~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~--~ 362 (507)
..+...+.+++|+|||+.|+ +++ + ..|++||++++ ....+..|...+.+++|+|+|+.+++++.. ++ .
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~----~~~~l~~~~~~~~~~~~spdg~~l~~~s~~--~g~~~ 292 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG----QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQ--AGRPQ 292 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC----CEEECCCCSSCEEEEEECTTSSEEEEEECT--TSSCE
T ss_pred ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC----CEEeCcCCCCcccceEECCCCCEEEEEECC--CCCcE
Confidence 77888999999999999888 444 4 45999999875 345677788899999999999877776642 34 7
Q ss_pred EEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccC--CCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEE
Q psy8285 363 VRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQ--DCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVA 440 (507)
Q Consensus 363 i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~--d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 440 (507)
|.+||+.+++..........+.+++|+|+|++|+++ ... +..|++||+.+++.. .+..+. .+.+++|+|+|++|+
T Consensus 293 i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~-~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~ 369 (415)
T 2hqs_A 293 VYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV-SSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVI 369 (415)
T ss_dssp EEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEE-EECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEE
T ss_pred EEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEE-ECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEE
Confidence 888899888754433334678899999999999985 222 358999999988764 455554 899999999999999
Q ss_pred EEeCCC---cEEEEecCCCCcccceeecCCCcceEEeecc
Q psy8285 441 AASADE---TISIWNCFPRDKKRKARQVGSGSSLEFAILK 477 (507)
Q Consensus 441 s~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (507)
+++.++ .|++||+............+.+.++.|+|..
T Consensus 370 ~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 370 YSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCC
T ss_pred EEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCcccccc
Confidence 988877 7999999865554444444566677777643
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-27 Score=209.63 Aligned_cols=208 Identities=11% Similarity=0.093 Sum_probs=145.5
Q ss_pred eeeeeeCCC----CEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEE-eCCCCcEEEEeC-CCc
Q psy8285 168 TSGLDWGYH----DTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVT-NTCTEYIDLWHE-QEE 241 (507)
Q Consensus 168 i~~~~~s~~----~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~dg~i~iwd~-~~~ 241 (507)
|++++++|+ +...++....+.+|++. +++.+.++ ...|+.|++|++ .++
T Consensus 114 v~sla~spd~~~~~~~l~s~g~~~~v~~l~-------------------------~g~lv~ss~~g~d~~V~~~~~s~dG 168 (356)
T 2w18_A 114 IRALFCSSDDESEKQVLLKSGNIKAVLGLT-------------------------KRRLVSSSGTLSDQQVEVMTFAEDG 168 (356)
T ss_dssp EEEECC------CCEEEEEEEEEEEEEEET-------------------------TTEEEEEESSSTTCEEEEEEECTTS
T ss_pred eEEEEECCCccccccEEEeCCCeEEEEecC-------------------------CCcEEEecccCCCCcEEEEEECCCC
Confidence 567888888 63222222446667543 23333332 125777888887 446
Q ss_pred eeEEEEeecCccEEEEEe-----eCCEEEEEecCCeEEEEECCCCCcCceeeecCC---CceEEEEEcCCCCEE------
Q psy8285 242 RLIQKLRTHMHQVIAMCW-----NGNLLSCGTIGGNILHYDVRTHSDYPTAITREG---DVVCGLKWSPNGRYL------ 307 (507)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------ 307 (507)
+.+..+..|...+..++| ++..|++++.|++|+|||+++++ ....+.+|. ..+.+++|+|+|+++
T Consensus 169 ~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk-~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~ 247 (356)
T 2w18_A 169 GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ-LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHP 247 (356)
T ss_dssp CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC-EEEEEECCC---CCCEEEEEEETTEEEEEEC--
T ss_pred ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc-EEEEEcCCCcceeeeEEEEECCCCCEEEEeccC
Confidence 666677777776666555 46999999999999999999987 555666543 367788999999887
Q ss_pred ------EEEe-CCcEEEEEcCCCCCCCCeeee-----cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee
Q psy8285 308 ------ASGS-NNTVKIWDFRQLDAKRPQVNN-----QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC 375 (507)
Q Consensus 308 ------~~~~-d~~i~i~d~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 375 (507)
++|+ |++|++||..++ +.+..+ .+|...+.+..++ + .++++++. |++|+|||+.+++++.
T Consensus 248 ~~~w~laSGs~D~tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g-~~lASgS~--DgTIkIWDl~tGk~l~ 319 (356)
T 2w18_A 248 CAKESESLRSPVFQLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--D-HCAAAILT--SGTIAIWDLLLGQCTA 319 (356)
T ss_dssp ----------CCEEEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--T-TEEEEEET--TSCEEEEETTTCSEEE
T ss_pred CCcceeeccCCCcEEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--C-CEEEEEcC--CCcEEEEECCCCcEEE
Confidence 4566 599999999887 444433 3565555444443 4 46677664 9999999999999999
Q ss_pred eeecC-CC-eEEEEECCCCCeEEEEeccCCCeEEEEeC
Q psy8285 376 HVKTD-SQ-VTSILWSEQYRELVTSHGKQDCSLKMWEY 411 (507)
Q Consensus 376 ~~~~~-~~-i~~~~~s~~~~~l~~~~g~~d~~i~v~d~ 411 (507)
++.++ .. +..++|+|||++|++ |+.|++|+|||+
T Consensus 320 tL~gH~~~vvs~vafSPDG~~LaS--GS~D~TIklWd~ 355 (356)
T 2w18_A 320 LLPPVSDQHWSFVKWSGTDSHLLA--GQKDGNIFVYHY 355 (356)
T ss_dssp EECCC--CCCCEEEECSSSSEEEE--ECTTSCEEEEEE
T ss_pred EecCCCCCeEEEEEECCCCCEEEE--EECCCcEEEecC
Confidence 99866 34 446899999999999 899999999995
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-28 Score=256.47 Aligned_cols=385 Identities=9% Similarity=0.003 Sum_probs=257.6
Q ss_pred CcccccceeeeeeccCcceeeeccccc----cccceeeecccCCcceeeee-cCccc-------ceeeccccccccccCC
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGI----CDQTVRLWNSMNGKEKCHVK-TDSQV-------TSILWSEQYRESSRSK 69 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~----~d~~i~iWd~~~g~~~~~~~-~~~~v-------~~~~~s~~~~~~~~~~ 69 (507)
|.+|.+.|.+++|||||++ ||+++.. .+..|++||+.+|+. ..+. +...+ ..+.|||+++ +....
T Consensus 48 lt~~~~~v~~~~~SPDG~~-la~~s~~~~~~~~~~i~~~d~~~g~~-~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~~ 124 (1045)
T 1k32_A 48 IVSNLGVINNARFFPDGRK-IAIRVMRGSSLNTADLYFYNGENGEI-KRITYFSGKSTGRRMFTDVAGFDPDGN-LIIST 124 (1045)
T ss_dssp EECSSSEEEEEEECTTSSE-EEEEEEESTTCCEEEEEEEETTTTEE-EECCCCCEEEETTEECSEEEEECTTCC-EEEEE
T ss_pred eeeCCCcccCeEECCCCCE-EEEEEeeccCCCCCeEEEEECCCCCe-EEcccCCCcccccccccccccCCCCCE-EEEEE
Confidence 5679999999999999998 6655410 245899999998874 3344 56666 8899999887 22211
Q ss_pred ccCCceeEeecCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccc
Q psy8285 70 MVNTDRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKV 149 (507)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (507)
....+ .....+++.++... +. .+.+
T Consensus 125 ~~~~~--------------------------------------------~~~~~~l~~~~~~~----g~-------~~~l 149 (1045)
T 1k32_A 125 DAMQP--------------------------------------------FSSMTCLYRVENDG----IN-------FVPL 149 (1045)
T ss_dssp CTTSS--------------------------------------------STTCCEEEEEEGGG----TE-------EEEC
T ss_pred CCcCC--------------------------------------------CcccceEEEEECCC----CC-------eEEe
Confidence 00000 00001122221100 00 0000
Q ss_pred cCCchhhhcCCCcccccceeeeeeCCCCEEEEEc-------------CCeEEEEECCC-CceeEEEecCCCCCCceEEEE
Q psy8285 150 KAKPERILEAPSIINDFYTSGLDWGYHDTLAVAL-------------DTSVYTWNTKT-NKTQLLVEYPTYDNAYISCVA 215 (507)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~-------------~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~ 215 (507)
.. . ....++|+| ++++.+. +....+|.... ++...+ .+ |...+.++.
T Consensus 150 ~~-------~-------~~~~~~~sp-G~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l---~~-~~~~v~~~~ 210 (1045)
T 1k32_A 150 NL-------G-------PATHILFAD-GRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI---VD-MSTHVSSPV 210 (1045)
T ss_dssp CS-------C-------SCSEEEEET-TEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE---EC-CSSCCEEEE
T ss_pred cC-------C-------CcceeeeCC-CEEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC---cC-CCCcccceE
Confidence 00 0 011356777 6444431 23445554322 443333 34 899999999
Q ss_pred EccCCCeEEEEeCCCCcEEEEeCCC-ceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeec--
Q psy8285 216 WKPRTTDLAVTNTCTEYIDLWHEQE-ERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITR-- 290 (507)
Q Consensus 216 ~~~~~~~l~~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-- 290 (507)
|+++ ..++++ +.++.+.||.+.. +.....+..|.. +...+| +++.|+++ .++.|++|++.... ...+..
T Consensus 211 ~s~d-~l~~~~-~~dg~~~l~~~~~~g~~~~~l~~~~~-~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~--l~~l~~~~ 284 (1045)
T 1k32_A 211 IVGH-RIYFIT-DIDGFGQIYSTDLDGKDLRKHTSFTD-YYPRHLNTDGRRILFS-KGGSIYIFNPDTEK--IEKIEIGD 284 (1045)
T ss_dssp EETT-EEEEEE-CTTSSCEEEEEETTSCSCEECCCCCS-SCEEEEEESSSCEEEE-ETTEEEEECTTTCC--EEECCCCC
T ss_pred EeCC-EEEEEE-eccCceEEEEEeCCCCcceEecCCCC-cceeeEcCCCCEEEEE-eCCEEEEecCCceE--eeeeccCc
Confidence 9988 455555 7889999998653 344455554442 334455 88888887 48999999984332 223332
Q ss_pred ---------CCCceEEEEEc-CCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCC-CeeEEEEccCCCcEEEEEccCC
Q psy8285 291 ---------EGDVVCGLKWS-PNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLS-AVKAIAWCPWEPTLLATGGGIC 359 (507)
Q Consensus 291 ---------~~~~v~~~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~ 359 (507)
|...+.+++|+ |||+.|++++++.+++|++..+ ....+..|.. .+..++|+ +++.+++.+.
T Consensus 285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~--- 356 (1045)
T 1k32_A 285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGT----YVLKVPEPLRIRYVRRGGD-TKVAFIHGTR--- 356 (1045)
T ss_dssp CCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSS----BEEECSCCSCEEEEEECSS-SEEEEEEEET---
T ss_pred ccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCC----ceEEccCCCcceEEeeeEc-CCCeEEEEEC---
Confidence 23468899999 9999999999999999999875 3444566777 89999999 8866666554
Q ss_pred CCeEE-EEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCE
Q psy8285 360 DQTVR-LWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC 438 (507)
Q Consensus 360 d~~i~-i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 438 (507)
+..+. +||+.+++......+...+..++|+|||++|++ ++.++.|++||+.+++....+.+|...+.+++|+|||++
T Consensus 357 ~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~--~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~ 434 (1045)
T 1k32_A 357 EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVV--ANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRF 434 (1045)
T ss_dssp TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEE--EETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCE
T ss_pred CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEE--ECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCe
Confidence 77888 999988776544433368999999999999998 678899999999999888888789999999999999999
Q ss_pred EEEEeCCC----------cEEEEecCCCCcccceeecCCCcceEEeeccCc
Q psy8285 439 VAAASADE----------TISIWNCFPRDKKRKARQVGSGSSLEFAILKQP 479 (507)
Q Consensus 439 l~s~~~dg----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (507)
|++++.++ .|++||+.+++.............+.|+++...
T Consensus 435 la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~ 485 (1045)
T 1k32_A 435 IAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKN 485 (1045)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCE
T ss_pred EEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCE
Confidence 98887654 899999988763333223333445566666543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-25 Score=207.90 Aligned_cols=272 Identities=10% Similarity=0.042 Sum_probs=204.6
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee-EEEEeecCccEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL-IQKLRTHMHQVIA 256 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~ 256 (507)
+++.+.++.|.+||..+++....... +...+ .++|+|+++++++++..++.|.+||+.+++. ...+..+..+..+
T Consensus 13 ~v~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 88 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDTLEILNQITL---GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMAD 88 (331)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEEC---CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCC
T ss_pred EEEecCCCeEEEEeCcccceeeeEEc---cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccc
Confidence 44455889999999999988777664 45556 9999999998887746689999999999887 7777767666655
Q ss_pred EEe--eCCEEEEEecCC---eEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-C-Cc-EEEEEcCCCCCCCC
Q psy8285 257 MCW--NGNLLSCGTIGG---NILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-N-NT-VKIWDFRQLDAKRP 328 (507)
Q Consensus 257 ~~~--~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~~-i~i~d~~~~~~~~~ 328 (507)
++| ++++++++..++ .|.+||+.+++ ....+. ......+++|+|+|+++++++ + +. |.+|++........
T Consensus 89 ~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~-~~~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~ 166 (331)
T 3u4y_A 89 VDITPDDQFAVTVTGLNHPFNMQSYSFLKNK-FISTIP-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD 166 (331)
T ss_dssp EEECTTSSEEEECCCSSSSCEEEEEETTTTE-EEEEEE-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred eEECCCCCEEEEecCCCCcccEEEEECCCCC-eEEEEE-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee
Confidence 777 688888555553 89999998875 333333 345578999999998666654 4 78 99999986411111
Q ss_pred e-eeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe---eeeeecCCCeEEEEECCCCCeEEEEeccCCC
Q psy8285 329 Q-VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE---KCHVKTDSQVTSILWSEQYRELVTSHGKQDC 404 (507)
Q Consensus 329 ~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~ 404 (507)
. .........+..++|+|+++++++++.. ++.|++||+.+++. +..+.....+..++|+|+|++++++ ...++
T Consensus 167 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~--~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~~ 243 (331)
T 3u4y_A 167 TGQEFISGGTRPFNITFTPDGNFAFVANLI--GNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVL-TESTV 243 (331)
T ss_dssp EEEEEECSSSSEEEEEECTTSSEEEEEETT--TTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEE-CSSEE
T ss_pred cCCccccCCCCccceEECCCCCEEEEEeCC--CCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEE-EcCCC
Confidence 1 1222345568999999999878887765 89999999999988 7778777788899999999988775 45678
Q ss_pred eEEEEeCCCccE--EEEeecc----ccc---eeEEEECCCCCEEEEEeC-CCcEEEEecCCCCc
Q psy8285 405 SLKMWEYPRLHL--IEELKIH----QER---ILSAVLSPDQTCVAAASA-DETISIWNCFPRDK 458 (507)
Q Consensus 405 ~i~v~d~~~~~~--~~~~~~~----~~~---i~~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~~ 458 (507)
.|.+||..+++. +..+..+ ... ...++|+||+++|++++. ++.|.+|++.....
T Consensus 244 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 244 DVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred EEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 899999998876 4433322 222 355899999998866554 57999999986543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=238.80 Aligned_cols=272 Identities=9% Similarity=0.092 Sum_probs=198.1
Q ss_pred eeeeeeCCCC-EEEEEcCCeEEEEECCCC---ceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 168 TSGLDWGYHD-TLAVALDTSVYTWNTKTN---KTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~~~~~i~iw~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
+..++||||+ .++.+.++.|++||+.++ +...+ .. +...+.+++|+|||++|+++ + ++.|++||+.+++.
T Consensus 111 v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l---~~-~~~~~~~~~~SPDG~~la~~-~-~~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQL---TH-GEGFATDAKLSPKGGFVSFI-R-GRNLWVIDLASGRQ 184 (741)
T ss_dssp SCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBC---CC-SSSCEEEEEECTTSSEEEEE-E-TTEEEEEETTTTEE
T ss_pred cceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEc---cc-CCcccccccCCCCCCEEEEE-e-CCcEEEEecCCCCE
Confidence 5579999998 666666699999999988 54433 23 67789999999999999988 4 56999999998877
Q ss_pred EEEEeecCcc----------------EEEEEe--eCCEEEEEecCC---------------------------------e
Q psy8285 244 IQKLRTHMHQ----------------VIAMCW--NGNLLSCGTIGG---------------------------------N 272 (507)
Q Consensus 244 ~~~~~~~~~~----------------v~~~~~--~~~~l~~~~~dg---------------------------------~ 272 (507)
......+... +..+.| |++.|++++.|+ .
T Consensus 185 ~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~ 264 (741)
T 2ecf_A 185 MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK 264 (741)
T ss_dssp EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred EEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence 6555444332 366778 799999987765 7
Q ss_pred EEEEECCC-CCcCceeee--cCCCceEEEEEcCCCCEEEEEe------CCcEEEEEcCCCCCCCCeeeecCCCC----Ce
Q psy8285 273 ILHYDVRT-HSDYPTAIT--REGDVVCGLKWSPNGRYLASGS------NNTVKIWDFRQLDAKRPQVNNQCHLS----AV 339 (507)
Q Consensus 273 i~i~d~~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~~----~v 339 (507)
|.+||+.+ ++ ...... .+...+..++| |||+.|+++. +..|++||+.++ +....+..+.. .+
T Consensus 265 l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~~ 339 (741)
T 2ecf_A 265 LGVISPAEQAQ-TQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN---QQRVLAHETSPTWVPLH 339 (741)
T ss_dssp EEEECSSTTCC-CEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC---CEEEEEEEECSSCCCCC
T ss_pred EEEEECCCCCc-eEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC---ceEEEEEcCCCCcCCcC
Confidence 88999987 65 222222 46778999999 9999988754 267999999887 44444443332 45
Q ss_pred eEEEEccCCCcEEEEEccCCCCeEEEEeCC-CCCeeeeeecC-CCeEEE-EECCCCCeEEEEeccCCC--eEEEEeCCC-
Q psy8285 340 KAIAWCPWEPTLLATGGGICDQTVRLWNSM-NGKEKCHVKTD-SQVTSI-LWSEQYRELVTSHGKQDC--SLKMWEYPR- 413 (507)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~-~~i~~~-~~s~~~~~l~~~~g~~d~--~i~v~d~~~- 413 (507)
..++|+|||+ +++++.. ++.+++|.+. +++ ...+..+ ..+..+ .|+|+++.|+++ ++.++ .++||++..
T Consensus 340 ~~~~~spdg~-~~~~~~~--~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~-~~~~~~~~~~l~~~~~~ 414 (741)
T 2ecf_A 340 NSLRFLDDGS-ILWSSER--TGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFR-AGIESARESQIYAVPLQ 414 (741)
T ss_dssp SCCEECTTSC-EEEEECT--TSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEE-ECSSCTTCBEEEEEETT
T ss_pred CceEECCCCe-EEEEecC--CCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEE-EeCCCCceEEEEEEEcC
Confidence 6899999997 6666654 7777777654 344 5555444 567777 599999988765 45555 899999864
Q ss_pred ccEEEEeeccccceeEEEECCCCCEEEEEeCC----CcEEEEecCCC
Q psy8285 414 LHLIEELKIHQERILSAVLSPDQTCVAAASAD----ETISIWNCFPR 456 (507)
Q Consensus 414 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~ 456 (507)
+.....+.. ...+..++|+|||++|+....+ ..+.+|+....
T Consensus 415 g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 415 GGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp CCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred CCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 555566665 5668899999999988765443 46888887543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.9e-25 Score=215.39 Aligned_cols=276 Identities=10% Similarity=0.084 Sum_probs=213.6
Q ss_pred eeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC--CCceeEEEE
Q psy8285 172 DWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE--QEERLIQKL 247 (507)
Q Consensus 172 ~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~--~~~~~~~~~ 247 (507)
.++|++ +++.+.++.|.+||..+++....+... + .+..++|+|++++|+++ +.|+.|++||+ .+++.+..+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g--~--~~~~v~~spdg~~l~v~-~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG--Y--AVHISRMSASGRYLLVI-GRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECS--T--TEEEEEECTTSCEEEEE-ETTSEEEEEETTSSSCEEEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecC--c--ccceEEECCCCCEEEEE-CCCCeEEEEECcCCCCcEEEEE
Confidence 367777 334447899999999999887766542 2 28899999999999999 88899999999 888888888
Q ss_pred eecCccEEEEEe------eCCEEEEEe-cCCeEEEEECCCCCcCceeeec----------C-CCceEEEEEcCCCCEEEE
Q psy8285 248 RTHMHQVIAMCW------NGNLLSCGT-IGGNILHYDVRTHSDYPTAITR----------E-GDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 248 ~~~~~~v~~~~~------~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~----------~-~~~v~~~~~~~~~~~l~~ 309 (507)
.. ...+..++| +++++++++ .+++|.+||..+.+ +...+.. | ...+..+.++|+++.+++
T Consensus 219 ~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~-~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v 296 (543)
T 1nir_A 219 KI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 296 (543)
T ss_dssp EC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred ec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc-cceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence 74 445677777 467888887 48999999998876 3333332 2 236889999998877666
Q ss_pred Ee--CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-----CC
Q psy8285 310 GS--NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-----SQ 382 (507)
Q Consensus 310 ~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~ 382 (507)
.. ++.|.+||+.+..... +..+ .+...+..+.|+|+++++++++.. +++|.+||+.+++++..+... ..
T Consensus 297 s~~~~g~i~vvd~~~~~~l~-~~~i-~~~~~~~~~~~spdg~~l~va~~~--~~~v~v~D~~tg~l~~~i~~g~~ph~g~ 372 (543)
T 1nir_A 297 NVKETGKVLLVNYKDIDNLT-VTSI-GAAPFLHDGGWDSSHRYFMTAANN--SNKVAVIDSKDRRLSALVDVGKTPHPGR 372 (543)
T ss_dssp EETTTTEEEEEECTTSSSCE-EEEE-ECCSSCCCEEECTTSCEEEEEEGG--GTEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred EECCCCeEEEEEecCCCcce-eEEe-ccCcCccCceECCCCCEEEEEecC--CCeEEEEECCCCeEEEeeccCCCCCCCC
Confidence 55 4999999998762211 1233 356678899999999888887765 899999999999988887642 22
Q ss_pred eEEEEECCCCCeEEEEeccCCCeEEEEeCCC-------ccEEEEeeccccceeEEEECCCCCEEEEEe-------CCCcE
Q psy8285 383 VTSILWSEQYRELVTSHGKQDCSLKMWEYPR-------LHLIEELKIHQERILSAVLSPDQTCVAAAS-------ADETI 448 (507)
Q Consensus 383 i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-------~dg~i 448 (507)
...+ ++|++..++++....|++|.+||+.+ ++.++++.+|...+..++++|++++|++++ .+++|
T Consensus 373 g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v 451 (543)
T 1nir_A 373 GANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSV 451 (543)
T ss_dssp CEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCE
T ss_pred Cccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceE
Confidence 3333 57874444443123689999999988 899999999988899999999999999987 26799
Q ss_pred EEEecCCCCcc
Q psy8285 449 SIWNCFPRDKK 459 (507)
Q Consensus 449 ~iw~~~~~~~~ 459 (507)
.+||+.+.+..
T Consensus 452 ~v~d~~~~~~~ 462 (543)
T 1nir_A 452 AVFDLKNLDAK 462 (543)
T ss_dssp EEEETTCTTSC
T ss_pred EEEECCCCCCC
Confidence 99999998876
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=219.72 Aligned_cols=263 Identities=13% Similarity=0.136 Sum_probs=174.8
Q ss_pred CCceEEEEEc---cCCCeEEEEeCCCCcEEEEeCCCc-------eeEEE--EeecCccEEEEEe----------------
Q psy8285 208 NAYISCVAWK---PRTTDLAVTNTCTEYIDLWHEQEE-------RLIQK--LRTHMHQVIAMCW---------------- 259 (507)
Q Consensus 208 ~~~v~~~~~~---~~~~~l~~~~~~dg~i~iwd~~~~-------~~~~~--~~~~~~~v~~~~~---------------- 259 (507)
+....++.|. |++..++++ +.++.|.+|+.... ..... ...+..++..+.|
T Consensus 15 ~~~p~~~~w~~~~~~~~~l~a~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 15 NVRPYTTTWCSQSPSCSNLLAI-GHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp TCCEEEEEECTTSGGGTTEEEE-EESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-------
T ss_pred CCCCeEEEEeCCCCCCCCEEEE-ECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcc
Confidence 3455667773 445556665 56888999975321 11111 1123333433333
Q ss_pred ------eCCEEEEEecCCeEEEEECCCCCcC----ceeeecCCCceEEEEEcC--------CCCEEEEEe-CCcEEEEEc
Q psy8285 260 ------NGNLLSCGTIGGNILHYDVRTHSDY----PTAITREGDVVCGLKWSP--------NGRYLASGS-NNTVKIWDF 320 (507)
Q Consensus 260 ------~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~v~~~~~~~--------~~~~l~~~~-d~~i~i~d~ 320 (507)
++.+|++++.|++|++||.+.++.. ...+.+|.+.|++++|+| |+++|++++ |++|+|||+
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL 173 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence 3568999999999999999876522 234578999999999998 889999999 699999999
Q ss_pred CCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeee----------------------
Q psy8285 321 RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK---------------------- 378 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---------------------- 378 (507)
+++ .+......|..++.+++|+|++..++++++. |++|++||+++++......
T Consensus 174 ~~~---~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~--d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 248 (393)
T 4gq1_A 174 TDE---GPILAGYPLSSPGISVQFRPSNPNQLIVGER--NGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC 248 (393)
T ss_dssp ETT---EEEEEEEECSSCEEEEEEETTEEEEEEEEET--TSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred CCC---ceeeeecCCCCCcEEEEECCCCCceEEecCC--CCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence 876 6777777899999999999998777888775 9999999998876433221
Q ss_pred ---cC-CCeEEEEEC-CCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEEC------------------C-
Q psy8285 379 ---TD-SQVTSILWS-EQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLS------------------P- 434 (507)
Q Consensus 379 ---~~-~~i~~~~~s-~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s------------------~- 434 (507)
.+ ..+.++.|+ |+++.|++ ++.|+.+++||+..++....+..|...+..+.+. |
T Consensus 249 ~~~~~~~~v~~v~~~~~dg~~l~s--~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 249 HSSGIASSLANVRWIGSDGSGILA--MCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp ---CCSSSCSEEEEETTTTCEEEE--ECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred ecccccccceeeeeecCCCCEEEE--EeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 11 457788876 89999999 8899999999998887776666665544443333 3
Q ss_pred -CCCEEEEEeCCCcEEEEecCCCCccccee-ecCCCcceEEeeccC
Q psy8285 435 -DQTCVAAASADETISIWNCFPRDKKRKAR-QVGSGSSLEFAILKQ 478 (507)
Q Consensus 435 -~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 478 (507)
++.++++|+.||.|++||+.+++...... ....+.++.|+++..
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~ 372 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGS 372 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSS
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCC
Confidence 33466788899999999999887765433 334555666665543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=239.71 Aligned_cols=368 Identities=12% Similarity=0.031 Sum_probs=257.5
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccC-CcceeeeecCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-GKEKCHVKTDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~-g~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|.+|.+.|.+++|+|+ .++++++ .|+.++||.+.. +.....+.....+....|+|+++.+....
T Consensus 199 l~~~~~~v~~~~~s~d--~l~~~~~--~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~----------- 263 (1045)
T 1k32_A 199 IVDMSTHVSSPVIVGH--RIYFITD--IDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSK----------- 263 (1045)
T ss_dssp EECCSSCCEEEEEETT--EEEEEEC--TTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEE-----------
T ss_pred CcCCCCcccceEEeCC--EEEEEEe--ccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEe-----------
Confidence 3579999999999998 4566766 689999998864 55555555444566778998887554320
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
+..+..|.+... .+..+... . ....+ .
T Consensus 264 ---~~~i~~~d~~~~----------------------------~l~~l~~~--------------~--~~~~~------~ 290 (1045)
T 1k32_A 264 ---GGSIYIFNPDTE----------------------------KIEKIEIG--------------D--LESPE------D 290 (1045)
T ss_dssp ---TTEEEEECTTTC----------------------------CEEECCCC--------------C--CCBCC------S
T ss_pred ---CCEEEEecCCce----------------------------EeeeeccC--------------c--ccccc------c
Confidence 111111111000 00000000 0 00000 0
Q ss_pred CcccccceeeeeeC-CCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCC-ceEEEEEccCCCeEEEEeCCCCcEE-EE
Q psy8285 161 SIINDFYTSGLDWG-YHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA-YISCVAWKPRTTDLAVTNTCTEYID-LW 236 (507)
Q Consensus 161 ~~~~~~~i~~~~~s-~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~dg~i~-iw 236 (507)
.......+..++|| |++ .++.+.++.|++|+..+++... +.. +.. .+..++|+ +|+.|+++ +.++.+. +|
T Consensus 291 ~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~---~~~-~~~~~~~~~~~s-dg~~l~~~-s~~~~l~~~~ 364 (1045)
T 1k32_A 291 RIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK---VPE-PLRIRYVRRGGD-TKVAFIHG-TREGDFLGIY 364 (1045)
T ss_dssp EEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE---CSC-CSCEEEEEECSS-SEEEEEEE-ETTEEEEEEE
T ss_pred ccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE---ccC-CCcceEEeeeEc-CCCeEEEE-ECCCceEEEE
Confidence 00112246789999 998 5666668999999998877543 233 566 89999999 99999988 6688888 99
Q ss_pred eCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CC
Q psy8285 237 HEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NN 313 (507)
Q Consensus 237 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~ 313 (507)
|+.+++... +..|...+..++| |++.|++++.++.|++||+.+++ .......|...+.+++|+|||++|++++ ++
T Consensus 365 d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~ 442 (1045)
T 1k32_A 365 DYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIERSREAMITDFTISDNSRFIAYGFPLK 442 (1045)
T ss_dssp ETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCCEEECTTSCEEEEEEEEC
T ss_pred ECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc-eEEeccCCCCCccceEECCCCCeEEEEecCc
Confidence 988776544 3478788999999 79999999999999999999876 4445557888899999999999998876 34
Q ss_pred ----------cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC-----------
Q psy8285 314 ----------TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK----------- 372 (507)
Q Consensus 314 ----------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~----------- 372 (507)
.|++||+.++ + ...+..|...+..++|+|+|+.+++.+. ++...+|+.....
T Consensus 443 ~~~~~~~~~~~i~l~d~~~g---~-~~~l~~~~~~~~~~~~spdG~~l~~~s~---~~~~~~~~~~~~~~~~~~~~~~~~ 515 (1045)
T 1k32_A 443 HGETDGYVMQAIHVYDMEGR---K-IFAATTENSHDYAPAFDADSKNLYYLSY---RSLDPSPDRVVLNFSFEVVSKPFV 515 (1045)
T ss_dssp SSTTCSCCEEEEEEEETTTT---E-EEECSCSSSBEEEEEECTTSCEEEEEES---CCCCCEECSSSSCEECCSCBEEEE
T ss_pred cccccCCCCCeEEEEECCCC---c-EEEeeCCCcccCCceEcCCCCEEEEEec---ccCCcCcchhccccccccCceeEE
Confidence 8999999876 3 6667778888999999999987776654 4544555432211
Q ss_pred --------------------------------eeeeeecC-CCeEEEEECCCCCeEEEE-----------eccCCCeEEE
Q psy8285 373 --------------------------------EKCHVKTD-SQVTSILWSEQYRELVTS-----------HGKQDCSLKM 408 (507)
Q Consensus 373 --------------------------------~~~~~~~~-~~i~~~~~s~~~~~l~~~-----------~g~~d~~i~v 408 (507)
.+..+..+ ..+..++++|+++.+++. .......|.+
T Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~ 595 (1045)
T 1k32_A 516 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLK 595 (1045)
T ss_dssp EESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEE
T ss_pred EEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEE
Confidence 11122223 568899999999877741 1223557899
Q ss_pred EeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 409 WEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 409 ~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
||+.+++... +. ..+..++|||||++|++++.+ .|++||+.+++
T Consensus 596 ~d~~~~~~~~-l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 596 YDVKTRKVTE-VK---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EETTTCCEEE-EE---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred EECCCCcEEE-ee---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 9998877533 32 568899999999999999877 89999998876
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-25 Score=229.59 Aligned_cols=250 Identities=12% Similarity=0.105 Sum_probs=177.5
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccE---------
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQV--------- 254 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v--------- 254 (507)
++.+++||+.+++...+....+ +...+..++|+|||+.|+++ + ++.|++||+.+++.......+...+
T Consensus 90 ~~~i~~~d~~~~~~~~l~~~~~-~~~~~~~~~~SPdG~~la~~-~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v 166 (723)
T 1xfd_A 90 TGYYVLSKIPHGDPQSLDPPEV-SNAKLQYAGWGPKGQQLIFI-F-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL 166 (723)
T ss_dssp CSEEEEEESSSCCCEECCCTTC-CSCCCSBCCBCSSTTCEEEE-E-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred eeeEEEEECCCCceEeccCCcc-ccccccccEECCCCCEEEEE-E-CCeEEEEECCCCceEEEecCCCCCceECccccee
Confidence 3789999999988644444333 55568999999999999998 4 4899999999988776665544333
Q ss_pred ---------EEEEe--eCCEEEEEecCC----------------------------------eEEEEECCCCCcCceeee
Q psy8285 255 ---------IAMCW--NGNLLSCGTIGG----------------------------------NILHYDVRTHSDYPTAIT 289 (507)
Q Consensus 255 ---------~~~~~--~~~~l~~~~~dg----------------------------------~i~i~d~~~~~~~~~~~~ 289 (507)
.+++| |++.|++++.++ .|++||+.+++ ....+.
T Consensus 167 ~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~-~~~~l~ 245 (723)
T 1xfd_A 167 YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT-HDLEMM 245 (723)
T ss_dssp HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC-CCEECC
T ss_pred EEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc-eeEEee
Confidence 67888 789999887553 79999998765 233444
Q ss_pred cC------CCceEEEEEcCCCCEEEEEe-C----CcEEEEEcCCCCCCCCeeeecC-CCCCe----eEEEEccCCCcEEE
Q psy8285 290 RE------GDVVCGLKWSPNGRYLASGS-N----NTVKIWDFRQLDAKRPQVNNQC-HLSAV----KAIAWCPWEPTLLA 353 (507)
Q Consensus 290 ~~------~~~v~~~~~~~~~~~l~~~~-d----~~i~i~d~~~~~~~~~~~~~~~-~~~~v----~~~~~~~~~~~~~~ 353 (507)
.+ ...+..++|+|||+++++.. . ..|++||+.++ +....... +...+ ..++|+|||+.+++
T Consensus 246 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 322 (723)
T 1xfd_A 246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG---VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFF 322 (723)
T ss_dssp CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC---CEEEEEEEECSSCCCCCCCCCEECTTSCSEEE
T ss_pred CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC---cceEEEEeccCCEEeccCCCceEcCCCCeEEE
Confidence 33 56789999999999987764 1 57999999887 44433322 33333 37899999988877
Q ss_pred E-EccCCCC------eEEEEe-CCCCCe--eeeeec-CCCeEE-EEECCCCCeEEEEeccCC--CeEEEEeCCCcc--EE
Q psy8285 354 T-GGGICDQ------TVRLWN-SMNGKE--KCHVKT-DSQVTS-ILWSEQYRELVTSHGKQD--CSLKMWEYPRLH--LI 417 (507)
Q Consensus 354 ~-~~~~~d~------~i~i~d-~~~~~~--~~~~~~-~~~i~~-~~~s~~~~~l~~~~g~~d--~~i~v~d~~~~~--~~ 417 (507)
. +.. ++ .|.+|| ..+++. ...+.. +..+.. ++|+|+|+.|++. +..+ +.+++|++.... ..
T Consensus 323 ~~~~~--~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~-~~~~~~~~~~l~~~~~~~~~~~ 399 (723)
T 1xfd_A 323 IRAIP--QGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFL-STEDLPRRRQLYSANTVGNFNR 399 (723)
T ss_dssp EEEEC--CSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEE-ESSSCTTCCEEEEECSSTTCCC
T ss_pred EEecc--cCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEE-EcCCCCcceEEEEEeCCCCCCc
Confidence 5 433 56 577788 444441 444443 344554 6999999999874 3444 789999886432 33
Q ss_pred EEeec---cccceeEEEECCCCCEEEEEe
Q psy8285 418 EELKI---HQERILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 418 ~~~~~---~~~~i~~~~~s~~~~~l~s~~ 443 (507)
..+.. |...+..++|+|||++|+...
T Consensus 400 ~~l~~~~~~~~~~~~~~~spdg~~l~~~~ 428 (723)
T 1xfd_A 400 QCLSCDLVENCTYFSASFSHSMDFFLLKC 428 (723)
T ss_dssp BCSSTTSSSSCCCCEEEECTTSSEEEEEC
T ss_pred ceecccccCCCCeEEEEECCCCCEEEEEc
Confidence 44443 567789999999999887653
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=230.70 Aligned_cols=301 Identities=11% Similarity=0.081 Sum_probs=219.7
Q ss_pred ceeeeeeCCCC--EEEEEc-CC-----eEEEEECCCCceeEEEecCCCCC----------------------CceEEEEE
Q psy8285 167 YTSGLDWGYHD--TLAVAL-DT-----SVYTWNTKTNKTQLLVEYPTYDN----------------------AYISCVAW 216 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~-~~-----~i~iw~~~~~~~~~~~~~~~~~~----------------------~~v~~~~~ 216 (507)
.+..++||||+ +++++. ++ .|++||+.+++...+....+ +. ..+.+++|
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKV-VLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGG-TC--------------------CCEESCCCEE
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhh-cccccccccchhhhhhhhhhhccccCcceeEE
Confidence 36789999998 445555 77 89999999998877776543 32 34889999
Q ss_pred ccCCCeEEEEeCCCCcEEEEeCCCce--eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCC
Q psy8285 217 KPRTTDLAVTNTCTEYIDLWHEQEER--LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREG 292 (507)
Q Consensus 217 ~~~~~~l~~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 292 (507)
+|||++|+++ +. +.|++||+.++. ....+..+...+..++| ||+.|++++ ++.|++||+.+++ .......+.
T Consensus 117 SpDg~~l~~~-~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~-~~~~~~~~~ 192 (741)
T 2ecf_A 117 SPDAQRLLFP-LG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR-QMQLTADGS 192 (741)
T ss_dssp CTTSSEEEEE-ET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE-EEECCCCCC
T ss_pred CCCCCEEEEE-eC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC-EEEeccCCc
Confidence 9999999998 44 999999999873 44556678888999999 799999887 5699999998765 222222222
Q ss_pred Cc----------------eEEEEEcCCCCEEEEEe-CC---------------------------------cEEEEEcCC
Q psy8285 293 DV----------------VCGLKWSPNGRYLASGS-NN---------------------------------TVKIWDFRQ 322 (507)
Q Consensus 293 ~~----------------v~~~~~~~~~~~l~~~~-d~---------------------------------~i~i~d~~~ 322 (507)
.. +..++|+|||++|++++ |+ .|++||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 21 46799999999999886 44 788999887
Q ss_pred -CCCCCCeeeec--CCCCCeeEEEEccCCCcEEEEEc--cCCCCeEEEEeCCCCCeeeeeecCC-----CeEEEEECCCC
Q psy8285 323 -LDAKRPQVNNQ--CHLSAVKAIAWCPWEPTLLATGG--GICDQTVRLWNSMNGKEKCHVKTDS-----QVTSILWSEQY 392 (507)
Q Consensus 323 -~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~--~~~d~~i~i~d~~~~~~~~~~~~~~-----~i~~~~~s~~~ 392 (507)
+ +...... .|...+..++| |||+.+++... ...+..|++||+.+++....+..+. .+..++|+|||
T Consensus 273 ~~---~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg 348 (741)
T 2ecf_A 273 QA---QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDG 348 (741)
T ss_dssp TC---CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTS
T ss_pred CC---ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCC
Confidence 6 3333222 46778999999 99987776653 1236789999999998777665442 34689999999
Q ss_pred CeEEEEeccCCCeEEEEeCC-CccEEEEeeccccceeEE-EECCCCCEEEE-EeCCC--cEEEEecCC-CCcccceeecC
Q psy8285 393 RELVTSHGKQDCSLKMWEYP-RLHLIEELKIHQERILSA-VLSPDQTCVAA-ASADE--TISIWNCFP-RDKKRKARQVG 466 (507)
Q Consensus 393 ~~l~~~~g~~d~~i~v~d~~-~~~~~~~~~~~~~~i~~~-~~s~~~~~l~s-~~~dg--~i~iw~~~~-~~~~~~~~~~~ 466 (507)
+++++ ++.+|.++||.+. .++ ...+..|...+..+ .|+|+++.|+. ++.++ .+++|++.. +.....+....
T Consensus 349 ~~~~~--~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~~ 425 (741)
T 2ecf_A 349 SILWS--SERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKAP 425 (741)
T ss_dssp CEEEE--ECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCSC
T ss_pred eEEEE--ecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccCC
Confidence 97777 6778877777665 344 77788888888887 59999997765 44455 899999864 33333333333
Q ss_pred CCcceEEeeccCc
Q psy8285 467 SGSSLEFAILKQP 479 (507)
Q Consensus 467 ~~~~~~~~~~~~~ 479 (507)
....+.|+++...
T Consensus 426 ~~~~~~~spdg~~ 438 (741)
T 2ecf_A 426 GMHSASFARNASV 438 (741)
T ss_dssp SEEEEEECTTSSE
T ss_pred CceEEEECCCCCE
Confidence 3445566665543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-24 Score=200.24 Aligned_cols=265 Identities=11% Similarity=0.094 Sum_probs=187.9
Q ss_pred EcCCeEEEEECC-CCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC--Cce--eEEEEeecCccEEE
Q psy8285 182 ALDTSVYTWNTK-TNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ--EER--LIQKLRTHMHQVIA 256 (507)
Q Consensus 182 ~~~~~i~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~--~~~--~~~~~~~~~~~v~~ 256 (507)
+.++.|++|++. +++........ +...+.+++|+|++++|++++..++.|.+|++. +++ .+..+..+. .+..
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~ 88 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTH 88 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSE
T ss_pred CCCCeEEEEEECCCCcEEEeeeEe--cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcE
Confidence 479999999985 34433333332 667889999999999999883444999999997 444 334444433 6778
Q ss_pred EEe--eCCEEEEEec-CCeEEEEECCCCC--cCceeeecCCCceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCe
Q psy8285 257 MCW--NGNLLSCGTI-GGNILHYDVRTHS--DYPTAITREGDVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQ 329 (507)
Q Consensus 257 ~~~--~~~~l~~~~~-dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~ 329 (507)
++| +++.|++++. ++.|.+||+..+. ...... .....+.+++|+|+++++++++ ++.|++||+.........
T Consensus 89 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 167 (343)
T 1ri6_A 89 ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-EGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQ 167 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-CCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred EEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc-cCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeee
Confidence 888 6777766654 8899999995221 122222 3344688899999999888776 599999999872111111
Q ss_pred e--eec-CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC--CCe--eeeee---c----CCCeEEEEECCCCCeE
Q psy8285 330 V--NNQ-CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN--GKE--KCHVK---T----DSQVTSILWSEQYREL 395 (507)
Q Consensus 330 ~--~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~--~~~~~---~----~~~i~~~~~s~~~~~l 395 (507)
. ... .....+..++|+|+++.+++++.. ++.|.+||+.. ++. ...+. . ...+..++|+|++++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~--~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l 245 (343)
T 1ri6_A 168 DPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL--NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHL 245 (343)
T ss_dssp EEEEEECSTTCCEEEEEECTTSSEEEEEETT--TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEE
T ss_pred cccccccCCCCCcceEEECCCCCEEEEEeCC--CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEE
Confidence 1 222 234578899999999878777754 89999999954 432 22222 1 1356789999999998
Q ss_pred EEEeccCCCeEEEEeCC----CccEEEEeeccccceeEEEECCCCCEEEEEe-CCCcEEEEecC
Q psy8285 396 VTSHGKQDCSLKMWEYP----RLHLIEELKIHQERILSAVLSPDQTCVAAAS-ADETISIWNCF 454 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d~~----~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~dg~i~iw~~~ 454 (507)
+++ +..++.|.+||+. +.+.+..+..+.. +..++|+|++++|++++ .++.|.+|++.
T Consensus 246 ~v~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 246 YAC-DRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EEE-ETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EEE-ecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 864 5678999999998 3345555555444 88999999999888887 68999999665
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-24 Score=198.41 Aligned_cols=266 Identities=12% Similarity=0.091 Sum_probs=208.9
Q ss_pred eeeeeeCCCC--EEEEEc-------CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 168 TSGLDWGYHD--TLAVAL-------DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~-------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
+..++|+|++ +++++. ++.|.+||..+++....... ...+..++|+|+++++++++..++.|.+||.
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN----DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE----SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec----CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 4568999987 444432 66899999999988777664 3347789999999977777577899999999
Q ss_pred CCceeEEEEeecCcc---------EEEEEe--eCCEEEEEe--cCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC
Q psy8285 239 QEERLIQKLRTHMHQ---------VIAMCW--NGNLLSCGT--IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR 305 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~---------v~~~~~--~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 305 (507)
.+++.+..+..+... +.++.| +++.+++++ .++.|.+||..+.+ ....+..+...+.+++|+|+++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK-LKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE-EEEEECCCCTTCCCCEEETTTT
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc-eEEEecCCCCccceEEECCCCC
Confidence 999988887764322 677888 677777665 47889999998875 3444443555678899999999
Q ss_pred EEEEEe-CCcEEEEEcCCCCCCCCeeeecC----CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC
Q psy8285 306 YLASGS-NNTVKIWDFRQLDAKRPQVNNQC----HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380 (507)
Q Consensus 306 ~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 380 (507)
++++++ ++.|.+||+.++ +....+.. +...+..++|+|+++.++++... ++.|.+||+.+++.+..+...
T Consensus 198 ~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~v~~~d~~~~~~~~~~~~~ 272 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADN---KILSRKKLLDDGKEHFFINISLDTARQRAFITDSK--AAEVLVVDTRNGNILAKVAAP 272 (353)
T ss_dssp EEEEECTTSEEEEEETTTT---EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS--SSEEEEEETTTCCEEEEEECS
T ss_pred EEEEEcCCCeEEEEECCCC---eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC--CCEEEEEECCCCcEEEEEEcC
Confidence 998888 599999999887 55544432 45568889999999888777764 799999999999988877765
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCC
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE 446 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg 446 (507)
.. ..++|+|++++++++ ...++.|.+||..+++.+..+..+ ..+.+++|+|+|++|+.+..++
T Consensus 273 ~~-~~~~~s~dg~~l~v~-~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 273 ES-LAVLFNPARNEAYVT-HRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp SC-CCEEEETTTTEEEEE-ETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred CC-ceEEECCCCCEEEEE-ECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 43 579999999987774 457899999999999988887754 4678999999999887766553
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-25 Score=225.28 Aligned_cols=276 Identities=13% Similarity=0.112 Sum_probs=203.1
Q ss_pred ceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC-----c
Q psy8285 167 YTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE-----E 241 (507)
Q Consensus 167 ~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~-----~ 241 (507)
.+.+++||||+.++.+.++.|++||+.+++...+.. +...+.+++|+|+|++|+++ .++.|++||+.+ +
T Consensus 83 ~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l~~----~~~~~~~~~~SpdG~~la~~--~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYLFD----TNEETASLDFSPVGDRVAYV--RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp CCEEEEETTTTEEEEEETTEEEEEETTTTEEEEEEC----CTTCCTTCEECTTSSEEEEE--ETTEEEEEECBCTTSCCC
T ss_pred CceeEEECCCCeEEEEECCEEEEEECCCCceEEccC----CcccccCCcCCCCCCEEEEE--ECCeEEEEecCcccccCC
Confidence 366799999997777778999999999887665544 55678899999999999986 579999999988 7
Q ss_pred eeEEEEeecCcc--------------EEEEEe--eCCEEEEEe---------------------------------cCCe
Q psy8285 242 RLIQKLRTHMHQ--------------VIAMCW--NGNLLSCGT---------------------------------IGGN 272 (507)
Q Consensus 242 ~~~~~~~~~~~~--------------v~~~~~--~~~~l~~~~---------------------------------~dg~ 272 (507)
+.......+... +.++.| |++.|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 766544444332 367888 799999987 3467
Q ss_pred EEEEECCCCCcCceee-ecCCCceEEEEEcCCCCEEEEEe-CC-----cEEEEEcCCCCCCCCeeeec--CCCC---Cee
Q psy8285 273 ILHYDVRTHSDYPTAI-TREGDVVCGLKWSPNGRYLASGS-NN-----TVKIWDFRQLDAKRPQVNNQ--CHLS---AVK 340 (507)
Q Consensus 273 i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-d~-----~i~i~d~~~~~~~~~~~~~~--~~~~---~v~ 340 (507)
|++||+.+++...... ..+...+.+++|+|||+.|++++ ++ .|++||+.++ +....+. .+.. .+.
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g---~~~~~~~~~~~~~~~~~~~ 313 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG---RFVRTLFVETDKHYVEPLH 313 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC---CEEEEEEEEECSSCCCCCS
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC---ceeeEEEEccCCCeECccC
Confidence 9999998765211111 24667799999999999988876 44 8999999876 2332222 1222 346
Q ss_pred EEEEcc--CCCcEEEEEccCCCCeEEEEeCC-CCCeeeeeecC-CCeEE-EEECCCCCeEEEEeccCCC----eEEEEeC
Q psy8285 341 AIAWCP--WEPTLLATGGGICDQTVRLWNSM-NGKEKCHVKTD-SQVTS-ILWSEQYRELVTSHGKQDC----SLKMWEY 411 (507)
Q Consensus 341 ~~~~~~--~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~-~~i~~-~~~s~~~~~l~~~~g~~d~----~i~v~d~ 411 (507)
.+.|+| +|+ +++++.. ++.+++|++. +++.+..+..+ ..+.. ++|+|+++.|+++ +..++ .|..||+
T Consensus 314 ~~~~sp~~dg~-~l~~~~~--~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~-~~~~~~~~~~l~~~d~ 389 (706)
T 2z3z_A 314 PLTFLPGSNNQ-FIWQSRR--DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFE-STEASPLERHFYCIDI 389 (706)
T ss_dssp CCEECTTCSSE-EEEEECT--TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEE-ESSSCTTCBEEEEEET
T ss_pred CceeecCCCCE-EEEEEcc--CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEE-ecCCCCceEEEEEEEc
Confidence 789999 986 5555544 7888888775 56666666554 45666 7999999998875 44454 7778888
Q ss_pred CCccEEEEeeccccceeEEEECCCCCEEEEEeCC----CcEEEEecCCCC
Q psy8285 412 PRLHLIEELKIHQERILSAVLSPDQTCVAAASAD----ETISIWNCFPRD 457 (507)
Q Consensus 412 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~~ 457 (507)
.+++ ...+. |...+.+++|+|||++|+....+ +.|++||+.+++
T Consensus 390 ~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 390 KGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp TCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 7765 34444 66779999999999988776443 569999998775
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-25 Score=198.94 Aligned_cols=252 Identities=12% Similarity=0.091 Sum_probs=189.9
Q ss_pred EcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC-ceeEEEEeec-CccEEEEEe
Q psy8285 182 ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE-ERLIQKLRTH-MHQVIAMCW 259 (507)
Q Consensus 182 ~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~-~~~~~~~~~~-~~~v~~~~~ 259 (507)
+.++.|++||+.+++...+.. |...+.+++|+|++++|+++ + ++.|++||+.+ ++.......+ ...+.+++|
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~----~~~~v~~~~~spdg~~l~~~-~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQ----TPELFEAPNWSPDGKYLLLN-S-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGI 92 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEE----ESSCCEEEEECTTSSEEEEE-E-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEE
T ss_pred CcceeEEEEeCCCCceeeecc----CCcceEeeEECCCCCEEEEE-c-CCeEEEEeCCCCCCceEeccccccccccceEE
Confidence 468899999999988765555 67889999999999999988 4 88999999998 7776666555 367788888
Q ss_pred --eCCEEEEEec--CCeEEE--EECCCCCcCceeeecCCCceEEEEEcCCCCEEE-EEe-CCcEEEEEcCCCCCCCCeee
Q psy8285 260 --NGNLLSCGTI--GGNILH--YDVRTHSDYPTAITREGDVVCGLKWSPNGRYLA-SGS-NNTVKIWDFRQLDAKRPQVN 331 (507)
Q Consensus 260 --~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d~~i~i~d~~~~~~~~~~~~ 331 (507)
+++.|++++. ++...+ ++..+.. ...+..+ ..+..++|+|+++.|+ ++. ++.+++|+++... .....
T Consensus 93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~--~~~~~ 167 (297)
T 2ojh_A 93 SPDGALYAISDKVEFGKSAIYLLPSTGGT--PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS--GVETR 167 (297)
T ss_dssp CTTSSEEEEEECTTTSSCEEEEEETTCCC--CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT--CCEEE
T ss_pred CCCCCEEEEEEeCCCCcceEEEEECCCCc--eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCC--CcceE
Confidence 7889999883 344444 4544433 3444433 3488899999999887 454 6889999875321 34556
Q ss_pred ecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC-CCCeeeeeecC-CCeEEEEECCCCCeEEEEecc--------
Q psy8285 332 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM-NGKEKCHVKTD-SQVTSILWSEQYRELVTSHGK-------- 401 (507)
Q Consensus 332 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~-------- 401 (507)
+..+...+.++.|+|+++.+++++.. ++.+++|++. .+.....+..+ ..+..++|+|++++|++++..
T Consensus 168 ~~~~~~~~~~~~~s~dg~~l~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 168 LTHGEGRNDGPDYSPDGRWIYFNSSR--TGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp CCCSSSCEEEEEECTTSSEEEEEECT--TSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred cccCCCccccceECCCCCEEEEEecC--CCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 66688899999999999877776654 7888888875 44455555444 568899999999999884211
Q ss_pred -CCCeEEEEeCCCccE--EEEeeccccceeEEEECCCCCEEEEEeCCC
Q psy8285 402 -QDCSLKMWEYPRLHL--IEELKIHQERILSAVLSPDQTCVAAASADE 446 (507)
Q Consensus 402 -~d~~i~v~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg 446 (507)
.++.|++||+.+++. +..+.+|...+..++|+|++++|++++.+.
T Consensus 246 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 125799999988765 444557888999999999999998887653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-23 Score=191.82 Aligned_cols=233 Identities=10% Similarity=0.102 Sum_probs=168.8
Q ss_pred eeeCCCC--EEEEE-cCCeEEEEECCCCce-eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCC---cEEEEeCCCcee
Q psy8285 171 LDWGYHD--TLAVA-LDTSVYTWNTKTNKT-QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTE---YIDLWHEQEERL 243 (507)
Q Consensus 171 ~~~s~~~--~~~~~-~~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg---~i~iwd~~~~~~ 243 (507)
++|+|++ +++++ .++.|++||+.+++. ...... +..+..+++|+|++++++++ ..++ .|.+||+.+++.
T Consensus 45 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~-~~~~~~~~i~v~d~~~~~~ 120 (331)
T 3u4y_A 45 TAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE---GQSSMADVDITPDDQFAVTV-TGLNHPFNMQSYSFLKNKF 120 (331)
T ss_dssp EEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE---CSSCCCCEEECTTSSEEEEC-CCSSSSCEEEEEETTTTEE
T ss_pred EEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc---CCCCccceEECCCCCEEEEe-cCCCCcccEEEEECCCCCe
Confidence 5666665 44444 478999999998886 444443 44555559999999999955 4443 899999999998
Q ss_pred EEEEeecCccEEEEEe--eCCEEE-EEecCCe-EEEEECCCCCcCc---eeeecCCCceEEEEEcCCCCEEEEEe--CCc
Q psy8285 244 IQKLRTHMHQVIAMCW--NGNLLS-CGTIGGN-ILHYDVRTHSDYP---TAITREGDVVCGLKWSPNGRYLASGS--NNT 314 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~--~~~~l~-~~~~dg~-i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~ 314 (507)
+..+..+ ....+++| ++++++ +...++. |.+|++....... ............++|+|+++++++++ ++.
T Consensus 121 ~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~ 199 (331)
T 3u4y_A 121 ISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNS 199 (331)
T ss_dssp EEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred EEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCe
Confidence 8877654 44588888 566454 4455578 9999998644211 12223445688999999999776665 499
Q ss_pred EEEEEcCCCCCCCC---eeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe--eeeeecC--------C
Q psy8285 315 VKIWDFRQLDAKRP---QVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE--KCHVKTD--------S 381 (507)
Q Consensus 315 i~i~d~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~--------~ 381 (507)
|.+||+.++ +. +..+. ....+..++|+|+++.++++..+ ++.|.+||+.+++. +..+... .
T Consensus 200 v~v~d~~~~---~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 273 (331)
T 3u4y_A 200 IGILETQNP---ENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTES--TVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLF 273 (331)
T ss_dssp EEEEECSST---TSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSS--EEEEEEEETTTTEEEEEEEEECCCCCCCGGGT
T ss_pred EEEEECCCC---cccceeeecc-CCCCCceEEECCCCCEEEEEEcC--CCEEEEEECCCCceeeecccccccccCCCCcc
Confidence 999999887 44 55555 44677899999999877777654 88999999998876 3333221 1
Q ss_pred CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc
Q psy8285 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~ 415 (507)
....++|+|++++|+++ +..++.|.+||+....
T Consensus 274 ~~~~~~~spdg~~l~v~-~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 274 GANQMALNKTETKLFIS-ANISRELKVFTISGKV 306 (331)
T ss_dssp TCCCEEECTTSSEEEEE-ETTTTEEEEEETTSCE
T ss_pred cccceEECCCCCEEEEe-cCCCCcEEEEEecCCc
Confidence 23568999999999875 5667899999997644
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-23 Score=195.14 Aligned_cols=219 Identities=11% Similarity=0.024 Sum_probs=171.3
Q ss_pred eeeCCCC--EEEEE-cCCeEEEEECCCCceeEEEecCCCCC-------CceEEEEEccCCCeEEEEe-CCCCcEEEEeCC
Q psy8285 171 LDWGYHD--TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDN-------AYISCVAWKPRTTDLAVTN-TCTEYIDLWHEQ 239 (507)
Q Consensus 171 ~~~s~~~--~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~-~~dg~i~iwd~~ 239 (507)
++|+|++ ++++. .++.|.+||..+++......... .. ..+.+++|+|+++++++++ ..++.|.+||..
T Consensus 94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~ 172 (353)
T 3vgz_A 94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDD-RKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG 172 (353)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCC-CCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT
T ss_pred EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCC-CccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC
Confidence 4455554 33333 57899999999998877666532 11 1278999999999888873 358899999999
Q ss_pred CceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeec----CCCceEEEEEcCCCCEEEEEe-C
Q psy8285 240 EERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITR----EGDVVCGLKWSPNGRYLASGS-N 312 (507)
Q Consensus 240 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~-d 312 (507)
+++.+..+..+...+..+.| +++.+++++.++.|.+||+.+++. ...+.. +...+..++|+|+++++++++ +
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI-LSRKKLLDDGKEHFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE-EEEEECCCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE-EEEEEcCCCCCCcccceEEECCCCCEEEEEeCC
Confidence 99998888755555677777 788999999999999999998763 333332 455678899999999887776 4
Q ss_pred -CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCC
Q psy8285 313 -NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQ 391 (507)
Q Consensus 313 -~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~ 391 (507)
+.|.+||+.++ +.+..+.... ...++|+|+++.++++... ++.|.+||..+++.+..+.....+..++|+|+
T Consensus 252 ~~~v~~~d~~~~---~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~d 324 (353)
T 3vgz_A 252 AAEVLVVDTRNG---NILAKVAAPE--SLAVLFNPARNEAYVTHRQ--AGKVSVIDAKSYKVVKTFDTPTHPNSLALSAD 324 (353)
T ss_dssp SSEEEEEETTTC---CEEEEEECSS--CCCEEEETTTTEEEEEETT--TTEEEEEETTTTEEEEEEECCSEEEEEEECTT
T ss_pred CCEEEEEECCCC---cEEEEEEcCC--CceEEECCCCCEEEEEECC--CCeEEEEECCCCeEEEEEecCCCCCeEEEcCC
Confidence 99999999887 5555554333 2579999999888887754 89999999999999888888788999999999
Q ss_pred CCeEEEE
Q psy8285 392 YRELVTS 398 (507)
Q Consensus 392 ~~~l~~~ 398 (507)
|++|+++
T Consensus 325 g~~l~v~ 331 (353)
T 3vgz_A 325 GKTLYVS 331 (353)
T ss_dssp SCEEEEE
T ss_pred CCEEEEE
Confidence 9988874
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-23 Score=195.21 Aligned_cols=260 Identities=10% Similarity=0.085 Sum_probs=178.2
Q ss_pred eeeeCCCC--EEEEEcC-CeEEEEECC--CCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC---Cc
Q psy8285 170 GLDWGYHD--TLAVALD-TSVYTWNTK--TNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ---EE 241 (507)
Q Consensus 170 ~~~~s~~~--~~~~~~~-~~i~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~---~~ 241 (507)
.++|+|++ +++++.+ +.|.+|++. +++......+.. + ..+..++|+|++++|++++..++.|.+||+. ..
T Consensus 42 ~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~ 119 (343)
T 1ri6_A 42 PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL-P-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV 119 (343)
T ss_dssp CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC-S-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE
T ss_pred eEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc-C-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc
Confidence 47778876 4555554 899999997 666555544442 3 3789999999999888774568999999994 33
Q ss_pred eeEEEEeecCccEEEEEe--eCCEEEEEe-cCCeEEEEECCCCCcCce----eee-cCCCceEEEEEcCCCCEEEEEe--
Q psy8285 242 RLIQKLRTHMHQVIAMCW--NGNLLSCGT-IGGNILHYDVRTHSDYPT----AIT-REGDVVCGLKWSPNGRYLASGS-- 311 (507)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~-~dg~i~i~d~~~~~~~~~----~~~-~~~~~v~~~~~~~~~~~l~~~~-- 311 (507)
+....+..+ ..+.+++| +++.+++++ .++.|.+||+.+...... ... .....+..++|+|+++++++++
T Consensus 120 ~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~ 198 (343)
T 1ri6_A 120 GVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL 198 (343)
T ss_dssp EEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT
T ss_pred cccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC
Confidence 444444433 45777888 677777777 899999999987221211 122 2345788999999999876665
Q ss_pred CCcEEEEEcCCCCC-CCCeeeec---C---CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC--CC--CeeeeeecC
Q psy8285 312 NNTVKIWDFRQLDA-KRPQVNNQ---C---HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM--NG--KEKCHVKTD 380 (507)
Q Consensus 312 d~~i~i~d~~~~~~-~~~~~~~~---~---~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~--~~~~~~~~~ 380 (507)
++.|.+||++.... ........ . ....+..++|+|+++.++++... ++.|.+||+. ++ +.+..+...
T Consensus 199 ~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~ 276 (343)
T 1ri6_A 199 NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT--ASLITVFSVSEDGSVLSKEGFQPTE 276 (343)
T ss_dssp TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT--TTEEEEEEECTTSCCEEEEEEEECS
T ss_pred CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC--CCEEEEEEEcCCCCceEEeeeecCC
Confidence 49999999964211 11122221 1 12356789999999888877754 8999999998 33 344455555
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEEeC--CCcc--EEEEeeccccceeEEEECCCC
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEY--PRLH--LIEELKIHQERILSAVLSPDQ 436 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~--~~~~--~~~~~~~~~~~i~~~~~s~~~ 436 (507)
..+..++|+|++++|+++ +..++.|.+|++ .+++ .+..+... ....+++|.++.
T Consensus 277 ~~~~~~~~s~dg~~l~~~-~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~ 334 (343)
T 1ri6_A 277 TQPRGFNVDHSGKYLIAA-GQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHE 334 (343)
T ss_dssp SSCCCEEECTTSSEEEEE-CTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC
T ss_pred CccceEEECCCCCEEEEe-cCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEccc
Confidence 568899999999998884 446899999954 4553 34444432 345567776654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.9e-24 Score=196.63 Aligned_cols=271 Identities=13% Similarity=0.057 Sum_probs=205.7
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCC-ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee-c----C
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA-YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT-H----M 251 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~-~----~ 251 (507)
+++++.++.|++||+.+++........ +.. .+..++|+|+++++++++..++.|.+||+.+++.+..+.. + .
T Consensus 4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 4 ILAPARPDKLVVIDTEKMAVDKVITIA--DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECT--TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEEcC--CCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 567789999999999999887766643 221 4789999999988776647789999999999988877653 2 1
Q ss_pred ccEEEEEe--eCCEEEEEe------------cCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEE
Q psy8285 252 HQVIAMCW--NGNLLSCGT------------IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKI 317 (507)
Q Consensus 252 ~~v~~~~~--~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i 317 (507)
..+..++| +++.++++. .++.|.+||+.+.+ ....+. ....+.+++|+|++++++++ ++.|++
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~-~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFE-APRQITMLAWARDGSKLYGL-GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEE-CCSSCCCEEECTTSSCEEEE-SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc-EEEEEe-CCCCcceeEECCCCCEEEEe-CCeEEE
Confidence 24566777 688888886 57999999998765 333333 24567889999999988887 689999
Q ss_pred EEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC-----------------------eEEEEeCCCCCee
Q psy8285 318 WDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ-----------------------TVRLWNSMNGKEK 374 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~-----------------------~i~i~d~~~~~~~ 374 (507)
||+.++ +....+..+.. ...+.|+|++..+++++.. ++ .|.+||+.+++..
T Consensus 159 ~d~~~~---~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 232 (337)
T 1pby_B 159 MDPEAG---TLVEDKPIQSW-EAETYAQPDVLAVWNQHES--SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232 (337)
T ss_dssp EETTTT---EEEEEECSTTT-TTTTBCCCBCCCCCCCCTT--TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred EECCCC---cEeeeeecccc-CCCceeCCCccEEeeeccC--CCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence 999886 45444443321 1133789998777665432 33 4789999998875
Q ss_pred e-eeec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 375 C-HVKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 375 ~-~~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
. .+.. ...+.+++|+|+++++++ + ++.|++||+.+++.+..+..+ ..+.+++|+|++++|++++.++.|++||
T Consensus 233 ~~~~~~~~~~~~~~~~s~dg~~l~~--~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 233 MREVRIMDVFYFSTAVNPAKTRAFG--A--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEE--E--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred EeecCCCCCceeeEEECCCCCEEEE--e--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 2 1222 246889999999999998 4 789999999999888877643 4678999999999999999999999999
Q ss_pred cCCCCcccceee
Q psy8285 453 CFPRDKKRKARQ 464 (507)
Q Consensus 453 ~~~~~~~~~~~~ 464 (507)
+.+++....++.
T Consensus 308 ~~~~~~~~~~~~ 319 (337)
T 1pby_B 308 AETLEKKGQVDL 319 (337)
T ss_dssp TTTCCEEEEEEC
T ss_pred CcCCcEEEEEEc
Confidence 999887766543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-24 Score=224.31 Aligned_cols=302 Identities=12% Similarity=0.095 Sum_probs=210.3
Q ss_pred eeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCC---ceEEEEEccCCCeEEEEeCCC---------CcEE
Q psy8285 168 TSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA---YISCVAWKPRTTDLAVTNTCT---------EYID 234 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~~d---------g~i~ 234 (507)
...++|+||+ +++.+.|+.|++||+.+++...+... +.. .|.+++|+|||++|+++ +.+ +.+.
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~---~~~~~~~v~~~~~SpDg~~l~~~-~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEG---KKIESLRAIRYEISPDREYALFS-YNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECT---TTTTTTTCSEEEECTTSSEEEEE-ESCCCCSSSCCCSEEE
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEecc---ccccccccceEEECCCCCEEEEE-ecCccceeecceeeEE
Confidence 4568999998 56567899999999999987666553 333 49999999999999988 543 7899
Q ss_pred EEeCCCceeEEEEe---ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCc---------------
Q psy8285 235 LWHEQEERLIQKLR---THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDV--------------- 294 (507)
Q Consensus 235 iwd~~~~~~~~~~~---~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--------------- 294 (507)
+||+.+++. ..+. .|...+..++| ||+.|++++. +.|++||+.+++ .......+...
T Consensus 95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-~~~~~~~~~~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-AIRVVSTGKEGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp EEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-CEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred EEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-eEEEecCCCCCceECcccceeEEEEe
Confidence 999998876 3333 34444777888 7999999885 799999998865 33333333322
Q ss_pred ---eEEEEEcCCCCEEEEEe-CC----------------------------------cEEEEEcCCCCCCCCeeeecCC-
Q psy8285 295 ---VCGLKWSPNGRYLASGS-NN----------------------------------TVKIWDFRQLDAKRPQVNNQCH- 335 (507)
Q Consensus 295 ---v~~~~~~~~~~~l~~~~-d~----------------------------------~i~i~d~~~~~~~~~~~~~~~~- 335 (507)
+.+++|+|||+.|++++ ++ .|++||+.++ +....+..+
T Consensus 172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~---~~~~~l~~~~ 248 (723)
T 1xfd_A 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP---THDLEMMPPD 248 (723)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS---CCCEECCCCC
T ss_pred ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC---ceeEEeeCCc
Confidence 37899999999999887 32 7899999876 333444433
Q ss_pred -----CCCeeEEEEccCCCcEEEEEc-cCCCCeEEEEeCCCCCeeeeeecC--CCe----EEEEECCCCCeEEEEeccCC
Q psy8285 336 -----LSAVKAIAWCPWEPTLLATGG-GICDQTVRLWNSMNGKEKCHVKTD--SQV----TSILWSEQYRELVTSHGKQD 403 (507)
Q Consensus 336 -----~~~v~~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~--~~i----~~~~~s~~~~~l~~~~g~~d 403 (507)
...+..++|+|||+.+++... +..+..|++||+.+++....+..+ ..+ ..++|+|||+.|+..+...+
T Consensus 249 ~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 328 (723)
T 1xfd_A 249 DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQ 328 (723)
T ss_dssp CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECC
T ss_pred cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEeccc
Confidence 567899999999965544432 112468999999999876655432 333 37899999999887423456
Q ss_pred C------eEEEEe-CCCcc--EEEEeeccccceeE-EEECCCCCEEEEEeCC---CcEEEEecCCCCc--cccee----e
Q psy8285 404 C------SLKMWE-YPRLH--LIEELKIHQERILS-AVLSPDQTCVAAASAD---ETISIWNCFPRDK--KRKAR----Q 464 (507)
Q Consensus 404 ~------~i~v~d-~~~~~--~~~~~~~~~~~i~~-~~~s~~~~~l~s~~~d---g~i~iw~~~~~~~--~~~~~----~ 464 (507)
+ .|++|| ..+++ +...+..+...+.. ++|+|||+.|+..+.+ +.+++|++..... ...+. .
T Consensus 329 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 408 (723)
T 1xfd_A 329 GGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVE 408 (723)
T ss_dssp SSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSS
T ss_pred CCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccC
Confidence 6 577788 34444 14455544444554 6999999999766655 7899999875432 22222 1
Q ss_pred cCCCcceEEeeccCc
Q psy8285 465 VGSGSSLEFAILKQP 479 (507)
Q Consensus 465 ~~~~~~~~~~~~~~~ 479 (507)
......+.|+++...
T Consensus 409 ~~~~~~~~~spdg~~ 423 (723)
T 1xfd_A 409 NCTYFSASFSHSMDF 423 (723)
T ss_dssp SCCCCEEEECTTSSE
T ss_pred CCCeEEEEECCCCCE
Confidence 233456677776543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-23 Score=216.23 Aligned_cols=273 Identities=11% Similarity=0.109 Sum_probs=187.9
Q ss_pred eeeeCCCC-EEEEEcCCeEEEEECCC-----CceeEEEecCCCCCCc--------------eEEEEEccCCCeEEEEeC-
Q psy8285 170 GLDWGYHD-TLAVALDTSVYTWNTKT-----NKTQLLVEYPTYDNAY--------------ISCVAWKPRTTDLAVTNT- 228 (507)
Q Consensus 170 ~~~~s~~~-~~~~~~~~~i~iw~~~~-----~~~~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~~- 228 (507)
.++||||+ .++.+.++.|++|++.+ ++...+... +... +.++.|+|||++|+++ +
T Consensus 125 ~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~---~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~-~~ 200 (706)
T 2z3z_A 125 SLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTID---GTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFY-RM 200 (706)
T ss_dssp TCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSC---CBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEE-EE
T ss_pred CCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccC---CCCCeEcccchhhhhcCCCceEEECCCCCEEEEE-EE
Confidence 36778887 66667889999999988 766544332 2222 5899999999999998 5
Q ss_pred --------------------------------CCCcEEEEeCCCceeEEEEe--ecCccEEEEEe--eCCEEEEEecCC-
Q psy8285 229 --------------------------------CTEYIDLWHEQEERLIQKLR--THMHQVIAMCW--NGNLLSCGTIGG- 271 (507)
Q Consensus 229 --------------------------------~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~--~~~~l~~~~~dg- 271 (507)
.+..|++||+.+++...... .|...+..++| |++.|++++.++
T Consensus 201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 280 (706)
T 2z3z_A 201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA 280 (706)
T ss_dssp ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT
T ss_pred CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC
Confidence 44689999999887655443 46677899999 788899887775
Q ss_pred ----eEEEEECCCCCcCceeee-cCCC---ceEEEEEcC--CCCEEEEEe-CCcEEEEEcC-CCCCCCCeeeecCCCCCe
Q psy8285 272 ----NILHYDVRTHSDYPTAIT-REGD---VVCGLKWSP--NGRYLASGS-NNTVKIWDFR-QLDAKRPQVNNQCHLSAV 339 (507)
Q Consensus 272 ----~i~i~d~~~~~~~~~~~~-~~~~---~v~~~~~~~--~~~~l~~~~-d~~i~i~d~~-~~~~~~~~~~~~~~~~~v 339 (507)
.|++||+.+++....... .+.. .+.+++|+| ||+++++++ ++.+++|++. .+ ..+..+..+...+
T Consensus 281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~---~~~~~l~~~~~~v 357 (706)
T 2z3z_A 281 QNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG---RLIRQVTKGEWEV 357 (706)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS---CEEEECCCSSSCE
T ss_pred CCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC---CEEEecCCCCeEE
Confidence 899999998732222221 2222 246789999 999888887 5888898876 33 5566677777778
Q ss_pred eE-EEEccCCCcEEEEEccCCCC----eEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCC--CeEEEEeCC
Q psy8285 340 KA-IAWCPWEPTLLATGGGICDQ----TVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQD--CSLKMWEYP 412 (507)
Q Consensus 340 ~~-~~~~~~~~~~~~~~~~~~d~----~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d--~~i~v~d~~ 412 (507)
.. ++|+|+++.+++++.. ++ .|..||+.+++ ...+.....+.+++|+|+|++++....+.+ +.|++||+.
T Consensus 358 ~~~~~~spdg~~l~~~~~~--~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 358 TNFAGFDPKGTRLYFESTE--ASPLERHFYCIDIKGGK-TKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp EEEEEECTTSSEEEEEESS--SCTTCBEEEEEETTCCC-CEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred EeeeEEcCCCCEEEEEecC--CCCceEEEEEEEcCCCC-ceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 76 8999999888887764 44 78888887776 444555567899999999999987522222 579999998
Q ss_pred CccEEEEeeccccceeEEEECCCCCEEEEEeCCC--cEEEEecCC
Q psy8285 413 RLHLIEELKIHQERILSAVLSPDQTCVAAASADE--TISIWNCFP 455 (507)
Q Consensus 413 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg--~i~iw~~~~ 455 (507)
+++ ...+ .+...+....+.+.. .+..-+.|| .+..|-..+
T Consensus 435 ~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~P 476 (706)
T 2z3z_A 435 KGS-HTLL-EAKNPDTGYAMPEIR-TGTIMAADGQTPLYYKLTMP 476 (706)
T ss_dssp SCE-EEEE-ECC------CCCCEE-EEEEECTTSSSEEEEEEECC
T ss_pred CCe-Eeec-cccchhhhcCCCCcE-EEEEEcCCCCEEEEEEEEeC
Confidence 877 3333 344445444443332 333334455 566665543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-22 Score=187.92 Aligned_cols=265 Identities=11% Similarity=0.096 Sum_probs=182.5
Q ss_pred CCeEEEEEC--CCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC--CCCcEEEEeCCCce--eEEEEeecCccEEEE
Q psy8285 184 DTSVYTWNT--KTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT--CTEYIDLWHEQEER--LIQKLRTHMHQVIAM 257 (507)
Q Consensus 184 ~~~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~ 257 (507)
++.|++|++ .+++...+.... +...+..++|+|+|+ |++++. .++.|.+|++.+++ .+..+..+...+..+
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~--~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLA--ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEE--ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeee--ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 456666655 456654433332 456678899999998 666522 26899999997765 344445567777788
Q ss_pred Ee--eCCEEEEEe-cCCeEEEEECCCCCcC--ceeeec---------CCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q psy8285 258 CW--NGNLLSCGT-IGGNILHYDVRTHSDY--PTAITR---------EGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQ 322 (507)
Q Consensus 258 ~~--~~~~l~~~~-~dg~i~i~d~~~~~~~--~~~~~~---------~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~ 322 (507)
+| ++++|++++ .++.|.+|++...... ...... ....+.+++|+|+|+++++.. ++.|.+|++..
T Consensus 92 a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~ 171 (347)
T 3hfq_A 92 AVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD 171 (347)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred EECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence 88 688888887 6799999999643211 111111 123488999999999554444 48999999983
Q ss_pred CCCCCCeeeecC-CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC--CCe--eeeeecC-------CCeEEEEECC
Q psy8285 323 LDAKRPQVNNQC-HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN--GKE--KCHVKTD-------SQVTSILWSE 390 (507)
Q Consensus 323 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~--~~~~~~~-------~~i~~~~~s~ 390 (507)
............ ....+..++|+|+|+.++++... ++.+.+|++.. ++. +..+... ..+..++|+|
T Consensus 172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~--~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp 249 (347)
T 3hfq_A 172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL--SSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH 249 (347)
T ss_dssp TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT--TTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT
T ss_pred CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCC--CCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC
Confidence 211111222222 23367889999999878877665 89999999874 442 2222211 3488899999
Q ss_pred CCCeEEEEeccCCCeEEEEeCC---CccEEEEeeccccceeEEEECCCCCEEEEEeCC-CcEEEEecC
Q psy8285 391 QYRELVTSHGKQDCSLKMWEYP---RLHLIEELKIHQERILSAVLSPDQTCVAAASAD-ETISIWNCF 454 (507)
Q Consensus 391 ~~~~l~~~~g~~d~~i~v~d~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-g~i~iw~~~ 454 (507)
+|++|+++ ...++.|.+|++. ..+.+..+..+...+..++|+|||++|++++.+ +.|.+|++.
T Consensus 250 dG~~l~v~-~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 250 DGHFLYVS-NRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp TSCEEEEE-EETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCEEEEE-eCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 99998764 4568999999997 335566666666678999999999998888764 899999664
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-21 Score=179.10 Aligned_cols=264 Identities=12% Similarity=0.099 Sum_probs=185.0
Q ss_pred cCCeEEEEEC--CCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC----CcEEEEeCCC--cee--EEEEeecCc
Q psy8285 183 LDTSVYTWNT--KTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT----EYIDLWHEQE--ERL--IQKLRTHMH 252 (507)
Q Consensus 183 ~~~~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d----g~i~iwd~~~--~~~--~~~~~~~~~ 252 (507)
.++.|++|.+ .+++....... +...+..++|+|++++|+++ +.+ +.|.+|++.. ++. +.....+..
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~~~~---~~~~p~~l~~spdg~~l~~~-~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~ 100 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPLSDA---EVANPSYLIPSADGKFVYSV-NEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGA 100 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEEEEE---ECSCCCSEEECTTSSEEEEE-ECCSSTTCEEEEEEEETTTTEEEEEEEEECSSS
T ss_pred CCCCEEEEEEeCCCCCEEEeecc---cCCCCceEEECCCCCEEEEE-EccCCCCCcEEEEEEeCCCCcEEEeeEeccCCC
Confidence 3568888865 55666555444 34567889999999999988 554 8999998865 433 333444556
Q ss_pred cEEEEEeeCCEEEEEe-cCCeEEEEECCCCCcCce---eee----------cCCCceEEEEEcCCCCEEEEEe--CCcEE
Q psy8285 253 QVIAMCWNGNLLSCGT-IGGNILHYDVRTHSDYPT---AIT----------REGDVVCGLKWSPNGRYLASGS--NNTVK 316 (507)
Q Consensus 253 ~v~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~---~~~----------~~~~~v~~~~~~~~~~~l~~~~--d~~i~ 316 (507)
....++++++.|++++ .++.|.+|++........ ... .+...+.+++|+|+|+++++++ ++.|.
T Consensus 101 ~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~ 180 (361)
T 3scy_A 101 DPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIH 180 (361)
T ss_dssp CEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEE
Confidence 6777888888777776 578999999975432111 111 1123458899999999877766 48999
Q ss_pred EEEcCCCCC------CCC----eeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe--eeeeecC----
Q psy8285 317 IWDFRQLDA------KRP----QVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE--KCHVKTD---- 380 (507)
Q Consensus 317 i~d~~~~~~------~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~---- 380 (507)
+|++..... ... ......+...+..++|+|+++.++++... ++.|.+||+.+++. +..+...
T Consensus 181 v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~--~~~v~v~~~~~g~~~~~~~~~~~~~~~ 258 (361)
T 3scy_A 181 KFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI--GGTVIAFRYADGMLDEIQTVAADTVNA 258 (361)
T ss_dssp EEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT--TCEEEEEEEETTEEEEEEEEESCSSCC
T ss_pred EEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC--CCeEEEEEecCCceEEeEEEecCCCCC
Confidence 999986521 100 11122345567899999999877777654 89999999987754 2222221
Q ss_pred CCeEEEEECCCCCeEEEEeccC-CCeEEEEeCC--Ccc--EEEEeeccccceeEEEECCCCCEEEEEe-CCCcEEEEecC
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQ-DCSLKMWEYP--RLH--LIEELKIHQERILSAVLSPDQTCVAAAS-ADETISIWNCF 454 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~-d~~i~v~d~~--~~~--~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~dg~i~iw~~~ 454 (507)
.....++|+|||++|+++ ... ++.|.+|++. +++ .+..+.. ...+..++|+|||++|++++ .++.|.+|++.
T Consensus 259 ~~~~~i~~spdg~~l~v~-~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 259 QGSGDIHLSPDGKYLYAS-NRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp CCEEEEEECTTSSEEEEE-ECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred CCcccEEECCCCCEEEEE-CCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 347899999999999774 344 5899999985 344 4444544 45678999999999988887 67899997665
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-23 Score=210.63 Aligned_cols=279 Identities=10% Similarity=0.080 Sum_probs=187.8
Q ss_pred eeeeCCCC-EEEE-Ec---------CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 170 GLDWGYHD-TLAV-AL---------DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 170 ~~~~s~~~-~~~~-~~---------~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
+++||||+ .++. +. ++.|++||+.+++......+ ...+..++|+|||+.|+++ .++.|++||+
T Consensus 64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l----~~~~~~~~~SPDG~~la~~--~~~~i~~~~~ 137 (719)
T 1z68_A 64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL----PRPIQYLCWSPVGSKLAYV--YQNNIYLKQR 137 (719)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC----CSSBCCEEECSSTTCEEEE--ETTEEEEESS
T ss_pred eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec----CcccccceECCCCCEEEEE--ECCeEEEEeC
Confidence 47777777 3433 33 58999999998876211222 2458899999999999988 4789999999
Q ss_pred CCceeEEEE-eecCccE-----------------EEEEe--eCCEEEEEecCC---------------------------
Q psy8285 239 QEERLIQKL-RTHMHQV-----------------IAMCW--NGNLLSCGTIGG--------------------------- 271 (507)
Q Consensus 239 ~~~~~~~~~-~~~~~~v-----------------~~~~~--~~~~l~~~~~dg--------------------------- 271 (507)
.+++..... .++...+ .+++| ||+.|++++.|.
T Consensus 138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~ 217 (719)
T 1z68_A 138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA 217 (719)
T ss_dssp TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBT
T ss_pred CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCC
Confidence 888765433 2232222 37888 799999987652
Q ss_pred -------eEEEEECCCCCcC----c---eeeecCCCceEEEEEcCCCCEEEEEeC-----CcEEEEE----cCCCCCCCC
Q psy8285 272 -------NILHYDVRTHSDY----P---TAITREGDVVCGLKWSPNGRYLASGSN-----NTVKIWD----FRQLDAKRP 328 (507)
Q Consensus 272 -------~i~i~d~~~~~~~----~---~~~~~~~~~v~~~~~~~~~~~l~~~~d-----~~i~i~d----~~~~~~~~~ 328 (507)
.|++||+.+++.. . ..+..|...+..++|+||++++++..+ ..|.+|| ..++ +.
T Consensus 218 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g---~~ 294 (719)
T 1z68_A 218 GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTW---DC 294 (719)
T ss_dssp TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSE---EC
T ss_pred CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCC---ce
Confidence 7889999876421 0 123357778999999999887777542 2488899 6665 33
Q ss_pred eeee----cCCCCCee-----EEEEccCCCcEEEE-EccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEE
Q psy8285 329 QVNN----QCHLSAVK-----AIAWCPWEPTLLAT-GGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTS 398 (507)
Q Consensus 329 ~~~~----~~~~~~v~-----~~~~~~~~~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 398 (507)
.... ..|...+. .+.|+|+|+.++.. ........|.+||+.+++..........+..+.++ +++.|+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~ 373 (719)
T 1z68_A 295 PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYS 373 (719)
T ss_dssp CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEE
T ss_pred EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEE
Confidence 3333 35666666 88999999877653 33212347888898777743332333567777777 88888774
Q ss_pred eccC----CCeEEEEeCCC--cc-EEEEee----ccccceeEEEECCCCCEEEE-EeCC--CcEEEEecCCCCcc
Q psy8285 399 HGKQ----DCSLKMWEYPR--LH-LIEELK----IHQERILSAVLSPDQTCVAA-ASAD--ETISIWNCFPRDKK 459 (507)
Q Consensus 399 ~g~~----d~~i~v~d~~~--~~-~~~~~~----~~~~~i~~~~~s~~~~~l~s-~~~d--g~i~iw~~~~~~~~ 459 (507)
+.. ++..++|.+.. +. ....+. +|...+..+.|+|++++++. ++.+ ..+.+|++.+++..
T Consensus 374 -~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~ 447 (719)
T 1z68_A 374 -SNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEI 447 (719)
T ss_dssp -ESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred -EecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence 333 47788887653 32 123333 25667888999999987764 3333 46889998777643
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-22 Score=186.11 Aligned_cols=240 Identities=11% Similarity=0.026 Sum_probs=177.3
Q ss_pred eeeCCCC--EEEEE-cCCeEEEEECCCCceeEEEecCCC--CCCceEEEEEccCCCeEEEEeC------------CCCcE
Q psy8285 171 LDWGYHD--TLAVA-LDTSVYTWNTKTNKTQLLVEYPTY--DNAYISCVAWKPRTTDLAVTNT------------CTEYI 233 (507)
Q Consensus 171 ~~~s~~~--~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~------------~dg~i 233 (507)
++|+|++ +++++ .++.|.+||+.+++.......... +...+.+++|+|++++++++ . .++.|
T Consensus 39 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~~~~~~~~~~~~i 117 (337)
T 1pby_B 39 PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIY-ESPVRLELTHFEVQPTRV 117 (337)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEE-EEEEEECSSCEEECCCEE
T ss_pred eEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEE-ecccccccccccccCceE
Confidence 6666766 33333 578999999999887766554210 01257789999999999988 4 57999
Q ss_pred EEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe
Q psy8285 234 DLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS 311 (507)
Q Consensus 234 ~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 311 (507)
.+||+.+++.+..+.. ...+.+++| ++++|+++ ++.|.+||+.+++ ....+..+.. ...+.|+|+++.++..+
T Consensus 118 ~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~-~~~~~~~~~~-~~~~~~s~dg~~l~~~~ 192 (337)
T 1pby_B 118 ALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT-LVEDKPIQSW-EAETYAQPDVLAVWNQH 192 (337)
T ss_dssp EEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE-EEEEECSTTT-TTTTBCCCBCCCCCCCC
T ss_pred EEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc-Eeeeeecccc-CCCceeCCCccEEeeec
Confidence 9999999888877764 345667777 67877777 6899999998875 3333332220 11237899988766554
Q ss_pred -C-C-----------------------cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEE
Q psy8285 312 -N-N-----------------------TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLW 366 (507)
Q Consensus 312 -d-~-----------------------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~ 366 (507)
. + .|.+||+.++... ...+..+...+.+++|+|+++.++++ ++.|.+|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~~l~~~-----~~~v~~~ 265 (337)
T 1pby_B 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MREVRIMDVFYFSTAVNPAKTRAFGA-----YNVLESF 265 (337)
T ss_dssp TTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEEEEECSSCEEEEEECTTSSEEEEE-----ESEEEEE
T ss_pred cCCCceeeeeeccccccccccccccccceEEEeCCCCCce--EeecCCCCCceeeEEECCCCCEEEEe-----CCeEEEE
Confidence 2 3 4689999886221 23344466678899999999776653 6899999
Q ss_pred eCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecccc
Q psy8285 367 NSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQE 425 (507)
Q Consensus 367 d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~ 425 (507)
|+.+++.+..+.....+.+++|+|+|++|++ ++.++.|++||+.+++.+..+..+..
T Consensus 266 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~--~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 266 DLEKNASIKRVPLPHSYYSVNVSTDGSTVWL--GGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp ETTTTEEEEEEECSSCCCEEEECTTSCEEEE--ESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred ECCCCcCcceecCCCceeeEEECCCCCEEEE--EcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 9999998888877777899999999999998 56799999999999998888875543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.9e-22 Score=180.20 Aligned_cols=224 Identities=13% Similarity=0.094 Sum_probs=169.7
Q ss_pred CCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCC-CCcCceeeecC-CCceEEEEEcCC
Q psy8285 228 TCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRT-HSDYPTAITRE-GDVVCGLKWSPN 303 (507)
Q Consensus 228 ~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~-~~~v~~~~~~~~ 303 (507)
+.++.|++||+.+++.. .+..|...+.+++| ++++|++++ ++.|++||+.+ ++ .......+ ...+.+++|+|+
T Consensus 19 ~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-PEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-CEECCCTTCCCBCSCCEECTT
T ss_pred CcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-ceEeccccccccccceEECCC
Confidence 67899999999988766 45568889999999 788898876 88999999988 65 33334344 367889999999
Q ss_pred CCEEEEEe-C--CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeC--CCCCeeeeee
Q psy8285 304 GRYLASGS-N--NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNS--MNGKEKCHVK 378 (507)
Q Consensus 304 ~~~l~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~--~~~~~~~~~~ 378 (507)
+++|+++. + +...+|.++... .....+. +...+..++|+|+++.+++++.. ++.+++|++ .+++......
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~-~~~~~~~~~~spdg~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~ 170 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTG--GTPRLMT-KNLPSYWHGWSPDGKSFTYCGIR--DQVFDIYSMDIDSGVETRLTH 170 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTC--CCCEECC-SSSSEEEEEECTTSSEEEEEEEE--TTEEEEEEEETTTCCEEECCC
T ss_pred CCEEEEEEeCCCCcceEEEEECCC--CceEEee-cCCCccceEECCCCCEEEEEECC--CCceEEEEEECCCCcceEccc
Confidence 99999988 2 455555554321 2233443 33358899999999888766654 888888885 4455443334
Q ss_pred cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCC-CccEEEEeeccccceeEEEECCCCCEEEEEeCC-----------C
Q psy8285 379 TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP-RLHLIEELKIHQERILSAVLSPDQTCVAAASAD-----------E 446 (507)
Q Consensus 379 ~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-----------g 446 (507)
....+.+++|+|++++|+++ +..++.+++|++. .+..+..+..|...+..++|+|++++|++++.+ +
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 249 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFN-SSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDV 249 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEE-ECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEE
T ss_pred CCCccccceECCCCCEEEEE-ecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCce
Confidence 44689999999999998874 4458889999886 556677788888889999999999999888765 5
Q ss_pred cEEEEecCCCCccc
Q psy8285 447 TISIWNCFPRDKKR 460 (507)
Q Consensus 447 ~i~iw~~~~~~~~~ 460 (507)
.|++||+.+++...
T Consensus 250 ~l~~~d~~~~~~~~ 263 (297)
T 2ojh_A 250 RVQLMDMDGGNVET 263 (297)
T ss_dssp EEEEEETTSCSCEE
T ss_pred EEEEEecCCCCcee
Confidence 69999998876543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-21 Score=180.46 Aligned_cols=279 Identities=9% Similarity=-0.018 Sum_probs=192.1
Q ss_pred eeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe
Q psy8285 171 LDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 171 ~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~ 248 (507)
+++++++ +++.+.++.|++||+.+++........ ....+..++|+|+++++++++..++.|.+||+.+++.+..+.
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP--DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS--SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecC--CCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 4556665 556678999999999999877766642 222578999999999777664778999999999998887776
Q ss_pred ecC------ccEEEEEe--eCCEEEEEecC------------CeEEEEECCCCCc--CceeeecCCCceEEEEEcCCCCE
Q psy8285 249 THM------HQVIAMCW--NGNLLSCGTIG------------GNILHYDVRTHSD--YPTAITREGDVVCGLKWSPNGRY 306 (507)
Q Consensus 249 ~~~------~~v~~~~~--~~~~l~~~~~d------------g~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~ 306 (507)
... ..+..++| ++++|++++.+ +.|.+||+.+++. ..... .+...+.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGS- 160 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSC-
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCCc-
Confidence 432 22566777 78899888865 8999999987432 12222 2344688899999999
Q ss_pred EEEEeCCcEEEEEcCCCCCCCCeeeecCCCC------------------------CeeEEEEccCCCcEEEEEccCCCCe
Q psy8285 307 LASGSNNTVKIWDFRQLDAKRPQVNNQCHLS------------------------AVKAIAWCPWEPTLLATGGGICDQT 362 (507)
Q Consensus 307 l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~~~~~~~~~~~d~~ 362 (507)
++++ ++.|++||+.++ +....+..+.. ....+++++++......... ...
T Consensus 161 l~~~-~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~~ 234 (349)
T 1jmx_B 161 LYVA-GPDIYKMDVKTG---KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADL--LYG 234 (349)
T ss_dssp EEEE-SSSEEEECTTTC---CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEE--EEE
T ss_pred EEEc-cCcEEEEeCCCC---ceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccc--cee
Confidence 5544 345999999876 44444432210 23446666554222111110 112
Q ss_pred EEEEeCCCCCeee-ee-ecCCCeEEEEECC-CCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEE
Q psy8285 363 VRLWNSMNGKEKC-HV-KTDSQVTSILWSE-QYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCV 439 (507)
Q Consensus 363 i~i~d~~~~~~~~-~~-~~~~~i~~~~~s~-~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 439 (507)
+..+|..+++... .+ .....+..++|+| +++++++ + ++.|.+||+.+++.+..+.. ...+.+++|+|++++|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~--~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l 309 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG--V--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKL 309 (349)
T ss_dssp EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEE--E--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCE
T ss_pred EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEE--E--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEE
Confidence 2235555544221 11 1235688999999 9999998 5 88999999999988887764 3457899999999999
Q ss_pred EEEeCCCcEEEEecCCCCcccceee
Q psy8285 440 AAASADETISIWNCFPRDKKRKARQ 464 (507)
Q Consensus 440 ~s~~~dg~i~iw~~~~~~~~~~~~~ 464 (507)
++++.++.|++||+.+.+....++.
T Consensus 310 ~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 310 YLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp EEESBSSEEEEEETTTTEEEEEEEC
T ss_pred EEecCCCeEEEEeccccceeeeeec
Confidence 8888899999999998877665543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9.5e-22 Score=196.69 Aligned_cols=185 Identities=8% Similarity=0.014 Sum_probs=138.2
Q ss_pred ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecC----CeEEEEECCCCCc
Q psy8285 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIG----GNILHYDVRTHSD 283 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d----g~i~i~d~~~~~~ 283 (507)
.+...+|+|+++.++.++..++.+.+||+.+++.......+. .+++| ||+.|++++.+ +.|++||+.+++
T Consensus 111 ~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~- 186 (582)
T 3o4h_A 111 PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG- 186 (582)
T ss_dssp SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-
T ss_pred CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-
Confidence 345678999987544332455666699999887665554433 45555 89999988877 789999998876
Q ss_pred CceeeecCCCceEEEEEcCCCCEEEEEe-CC--cEEEEEcCCCCCCCCeeeecCCCCCeeEEE--------EccCCCcEE
Q psy8285 284 YPTAITREGDVVCGLKWSPNGRYLASGS-NN--TVKIWDFRQLDAKRPQVNNQCHLSAVKAIA--------WCPWEPTLL 352 (507)
Q Consensus 284 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~~ 352 (507)
...+..+...+..++|+|||+.|+++. ++ .|++||+.++ +.. .+..|...+..+. |+||| .++
T Consensus 187 -~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~~~ 260 (582)
T 3o4h_A 187 -LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAITWLGYLPDG-RLA 260 (582)
T ss_dssp -CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEEEEEECTTS-CEE
T ss_pred -ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhccccceeEcCCC-cEE
Confidence 456778888899999999999999666 46 8999999886 444 5666777777777 99999 777
Q ss_pred EEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCC---CeEEEEeCCC
Q psy8285 353 ATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQD---CSLKMWEYPR 413 (507)
Q Consensus 353 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d---~~i~v~d~~~ 413 (507)
+++.. ++++++|++ ++.... ....+.+++|+ +++.+++. +.+ ..+++||..+
T Consensus 261 ~~~~~--~g~~~l~~~--g~~~~~--~~~~v~~~~~s-dg~~l~~~--s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 261 VVARR--EGRSAVFID--GERVEA--PQGNHGRVVLW-RGKLVTSH--TSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEE--TTEEEEEET--TEEECC--CSSEEEEEEEE-TTEEEEEE--EETTEEEEEEEETTCC
T ss_pred EEEEc--CCcEEEEEE--CCeecc--CCCceEEEEec-CCEEEEEE--cCCCCCCeEEEEcCCC
Confidence 77765 999999999 665442 22568899999 88888773 344 3577777654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-21 Score=180.44 Aligned_cols=278 Identities=11% Similarity=0.006 Sum_probs=191.7
Q ss_pred ceeeeeeCCCC--EEEEEc-CC--eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc
Q psy8285 167 YTSGLDWGYHD--TLAVAL-DT--SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE 241 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~-~~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~ 241 (507)
++...+||||+ ++.++. ++ .|++||+.+++..++... +...+..+.|+|+++.|+.+ +.++.|++||+.++
T Consensus 37 ~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~---~~~~~~~~~~spdg~~l~~~-~~~~~l~~~d~~~g 112 (388)
T 3pe7_A 37 YFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG---RGDNTFGGFLSPDDDALFYV-KDGRNLMRVDLATL 112 (388)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCS---SCBCSSSCEECTTSSEEEEE-ETTTEEEEEETTTC
T ss_pred hhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeC---CCCCccceEEcCCCCEEEEE-eCCCeEEEEECCCC
Confidence 34457899998 444554 55 599999998887665543 44455567899999999999 78889999999999
Q ss_pred eeEEEEeecCccEEEEEe----eCCEEEEEe----------------------cCCeEEEEECCCCCcCceeeecCCCce
Q psy8285 242 RLIQKLRTHMHQVIAMCW----NGNLLSCGT----------------------IGGNILHYDVRTHSDYPTAITREGDVV 295 (507)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~----~~~~l~~~~----------------------~dg~i~i~d~~~~~~~~~~~~~~~~~v 295 (507)
+.......+...+....| +++.++... .+..|.+||+.+++ ...+..+...+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~ 190 (388)
T 3pe7_A 113 EENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWL 190 (388)
T ss_dssp CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCE
T ss_pred cceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc--eEEeecCCccc
Confidence 877766666655544443 677776432 34679999999875 44555566778
Q ss_pred EEEEEcC-CCCEEEEEeC-C------cEEEEEcCCCCCCCCeeeecCCC--CCeeEEEEccCCCcEEEEEccCCC--CeE
Q psy8285 296 CGLKWSP-NGRYLASGSN-N------TVKIWDFRQLDAKRPQVNNQCHL--SAVKAIAWCPWEPTLLATGGGICD--QTV 363 (507)
Q Consensus 296 ~~~~~~~-~~~~l~~~~d-~------~i~i~d~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~d--~~i 363 (507)
..++|+| ||+.|+...+ + .|.++|.... ....+..+. ..+..+.|+|||+.++..+..... ..|
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~----~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 266 (388)
T 3pe7_A 191 GHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT----NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFI 266 (388)
T ss_dssp EEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC----CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEE
T ss_pred cccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC----ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceE
Confidence 9999999 9999887763 2 6778887654 333333333 357889999999888665542111 249
Q ss_pred EEEeCCCCCeeeeeecCC--C----eEEEEECCCCCeEEEEe-------ccCCCeEEEEeCCCccEEEEeecccc-----
Q psy8285 364 RLWNSMNGKEKCHVKTDS--Q----VTSILWSEQYRELVTSH-------GKQDCSLKMWEYPRLHLIEELKIHQE----- 425 (507)
Q Consensus 364 ~i~d~~~~~~~~~~~~~~--~----i~~~~~s~~~~~l~~~~-------g~~d~~i~v~d~~~~~~~~~~~~~~~----- 425 (507)
++||+.+++......... . ...+.|+|||+.|+... ...+..|++||+.+++. ..+..+..
T Consensus 267 ~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~ 345 (388)
T 3pe7_A 267 YSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVF 345 (388)
T ss_dssp EEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCB
T ss_pred EEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCccccc
Confidence 999999987543322221 0 11237999999988631 14466899999988765 44555555
Q ss_pred ------ceeEEEECCCCCEEEEEe-CCCcEEEEecCC
Q psy8285 426 ------RILSAVLSPDQTCVAAAS-ADETISIWNCFP 455 (507)
Q Consensus 426 ------~i~~~~~s~~~~~l~s~~-~dg~i~iw~~~~ 455 (507)
.+..++|+|||+.|+..+ .+|...+|.+.-
T Consensus 346 ~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 346 EGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp TTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred ccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 578899999999887665 467777776543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-20 Score=173.13 Aligned_cols=245 Identities=11% Similarity=0.079 Sum_probs=169.9
Q ss_pred eeeeeCCCC-EEEEEc---CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC-c--
Q psy8285 169 SGLDWGYHD-TLAVAL---DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE-E-- 241 (507)
Q Consensus 169 ~~~~~s~~~-~~~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~-~-- 241 (507)
..++|+|++ +++++. ++.|++|++.+++...+..... +...+..++|+|++++|++++..++.|.+|++.. +
T Consensus 43 ~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~-~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 43 TYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVA-PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL 121 (347)
T ss_dssp CCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE-ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred ceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeec-CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence 359999998 666654 5899999998777655544333 5667889999999999998845789999999963 2
Q ss_pred eeEEEEeec---------CccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCce--eee-cCCCceEEEEEcCCCCEE
Q psy8285 242 RLIQKLRTH---------MHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPT--AIT-REGDVVCGLKWSPNGRYL 307 (507)
Q Consensus 242 ~~~~~~~~~---------~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l 307 (507)
+.+..+... ...+.+++| +++++++...++.|.+|++........ ... ........++|+|||+++
T Consensus 122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l 201 (347)
T 3hfq_A 122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA 201 (347)
T ss_dssp EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE
Confidence 333333221 124778888 677666666788999999983221111 112 223467889999999987
Q ss_pred EEEe--CCcEEEEEcCCCC-CCCCeeeecCCC------CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC---Ceee
Q psy8285 308 ASGS--NNTVKIWDFRQLD-AKRPQVNNQCHL------SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG---KEKC 375 (507)
Q Consensus 308 ~~~~--d~~i~i~d~~~~~-~~~~~~~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~~~ 375 (507)
++++ ++.|.+|++.... ............ ..+..++|+|+|++++++... ++.|.+|++... +.+.
T Consensus 202 ~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~--~~~v~v~~~~~~g~~~~~~ 279 (347)
T 3hfq_A 202 FLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG--YNTLAVFAVTADGHLTLIQ 279 (347)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET--TTEEEEEEECGGGCEEEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC--CCEEEEEEECCCCcEEEeE
Confidence 7765 4899999987521 111122222222 458899999999888777665 899999998732 3444
Q ss_pred eeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEE--eCCCccEE
Q psy8285 376 HVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMW--EYPRLHLI 417 (507)
Q Consensus 376 ~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~--d~~~~~~~ 417 (507)
.+..+ ..+..++|+|+|++|+++ +..++.|.+| |..+++..
T Consensus 280 ~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 280 QISTEGDFPRDFDLDPTEAFVVVV-NQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEECSSSCCCEEEECTTSSEEEEE-ETTTTEEEEEEECTTTCCEE
T ss_pred EEecCCCCcCeEEECCCCCEEEEE-EcCCCcEEEEEEeCCCCeEE
Confidence 45443 458899999999999885 4456899999 55556544
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-20 Score=189.24 Aligned_cols=281 Identities=10% Similarity=0.060 Sum_probs=182.0
Q ss_pred eeeCCCC-EEEEE-cC---------CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC
Q psy8285 171 LDWGYHD-TLAVA-LD---------TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ 239 (507)
Q Consensus 171 ~~~s~~~-~~~~~-~~---------~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~ 239 (507)
++||||+ .++.+ .+ +.+++||+.+++...+ .. +...+..++|||||+.||.+ .++.|++|++.
T Consensus 67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l---~~-~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~ 140 (740)
T 4a5s_A 67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE---ER-IPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEP 140 (740)
T ss_dssp EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS---SC-CCTTEEEEEECSSTTCEEEE--ETTEEEEESST
T ss_pred eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc---cc-CCCcceeeEECCCCCEEEEE--ECCeEEEEECC
Confidence 6678887 44433 32 6788999999886543 33 67789999999999999988 57899999998
Q ss_pred CceeEEEEe-ecCccE-----------------EEEEe--eCCEEEEEecCC----------------------------
Q psy8285 240 EERLIQKLR-THMHQV-----------------IAMCW--NGNLLSCGTIGG---------------------------- 271 (507)
Q Consensus 240 ~~~~~~~~~-~~~~~v-----------------~~~~~--~~~~l~~~~~dg---------------------------- 271 (507)
+++..+... ++...+ ..+.| ||+.|+.++.|.
T Consensus 141 ~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~ 220 (740)
T 4a5s_A 141 NLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPK 220 (740)
T ss_dssp TSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCB
T ss_pred CCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCC
Confidence 877554322 222222 23667 899888875321
Q ss_pred --------eEEEEECCC---CCc-Cceeee------cCCCceEEEEEcCCCCEEEEEeC-----CcEEEEEcCCCCC---
Q psy8285 272 --------NILHYDVRT---HSD-YPTAIT------REGDVVCGLKWSPNGRYLASGSN-----NTVKIWDFRQLDA--- 325 (507)
Q Consensus 272 --------~i~i~d~~~---~~~-~~~~~~------~~~~~v~~~~~~~~~~~l~~~~d-----~~i~i~d~~~~~~--- 325 (507)
.|++||+.+ ++. ....+. ++...+..++|+|||+.++...+ ..|++||+.++..
T Consensus 221 ~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~ 300 (740)
T 4a5s_A 221 AGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWN 300 (740)
T ss_dssp TTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEE
T ss_pred CcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccc
Confidence 478899987 531 122232 36778999999999997766541 4799999988730
Q ss_pred CCCeeee--cCCCCCee-----EEEEccCCCcEE-EEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEE
Q psy8285 326 KRPQVNN--QCHLSAVK-----AIAWCPWEPTLL-ATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVT 397 (507)
Q Consensus 326 ~~~~~~~--~~~~~~v~-----~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (507)
......+ ..+...+. .+.|+|||+.++ ..+.......|++||+.+++......+...+..+.. ++++.|+.
T Consensus 301 ~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f 379 (740)
T 4a5s_A 301 CLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYY 379 (740)
T ss_dssp ECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEE
T ss_pred eeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEE
Confidence 0012222 34555544 789999998776 444332235789999988776655555556666543 44777666
Q ss_pred EeccC----CC--eEEEEeCCCccEEEEeec----cccceeEEEECCCCCEEEEEeCC---CcEEEEecCCCCcc
Q psy8285 398 SHGKQ----DC--SLKMWEYPRLHLIEELKI----HQERILSAVLSPDQTCVAAASAD---ETISIWNCFPRDKK 459 (507)
Q Consensus 398 ~~g~~----d~--~i~v~d~~~~~~~~~~~~----~~~~i~~~~~s~~~~~l~s~~~d---g~i~iw~~~~~~~~ 459 (507)
. +.. .+ .|+..++..+.....+.. ....+..+.|+|++++++..... ..+.+++..+++..
T Consensus 380 ~-~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~ 453 (740)
T 4a5s_A 380 I-SNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGL 453 (740)
T ss_dssp E-ESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEE
T ss_pred E-EecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 4 333 23 455556555444334432 23568899999999987654433 46788887765443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=200.34 Aligned_cols=272 Identities=12% Similarity=0.118 Sum_probs=194.0
Q ss_pred eeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCC---ceEEEEEccCCCeEEEEeCC---------CCcEEEE
Q psy8285 170 GLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA---YISCVAWKPRTTDLAVTNTC---------TEYIDLW 236 (507)
Q Consensus 170 ~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~~---------dg~i~iw 236 (507)
.++|+|++ +++.+.++.|++||+.+++...+... +.. .+.+++|||||++|+++ +. ++.|++|
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~SpDg~~la~~-~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSN---RTMKSVNASNYGLSPDRQFVYLE-SDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECH---HHHHTTTCSEEEECTTSSEEEEE-EEEEECSSSCEEEEEEEE
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEcc---ccccccceeeEEECCCCCeEEEE-ecCceeEEeecceEEEEE
Confidence 58999998 66666899999999999987766653 222 38999999999999988 44 6899999
Q ss_pred eCCCceeE--EEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCce-----------------
Q psy8285 237 HEQEERLI--QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVV----------------- 295 (507)
Q Consensus 237 d~~~~~~~--~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v----------------- 295 (507)
|+.+++.+ ..+ ...+..++| ||+.|+++. ++.|++|++.+++.......++...+
T Consensus 96 d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~ 171 (719)
T 1z68_A 96 DLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK 171 (719)
T ss_dssp ETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred ECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence 99998762 122 245777888 899998886 78999999987652211112222222
Q ss_pred EEEEEcCCCCEEEEEe-C-C---------------------------------cEEEEEcCCCCCCCCe--------eee
Q psy8285 296 CGLKWSPNGRYLASGS-N-N---------------------------------TVKIWDFRQLDAKRPQ--------VNN 332 (507)
Q Consensus 296 ~~~~~~~~~~~l~~~~-d-~---------------------------------~i~i~d~~~~~~~~~~--------~~~ 332 (507)
.+++|+|||+.|++++ | + .|++||+.++ +.. ..+
T Consensus 172 ~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~---~~~~~~~~~~~~~~ 248 (719)
T 1z68_A 172 YALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP---AYVGPQEVPVPAMI 248 (719)
T ss_dssp CCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH---HHHCCEECCCCHHH
T ss_pred ccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC---CccceeEccCCccC
Confidence 4799999999999887 4 2 7889999875 221 223
Q ss_pred cCCCCCeeEEEEccCCCcEEEEEccCCC--CeEEEEe----CCCCCeeeeee----cC-CCeE-----EEEECCCCCeEE
Q psy8285 333 QCHLSAVKAIAWCPWEPTLLATGGGICD--QTVRLWN----SMNGKEKCHVK----TD-SQVT-----SILWSEQYRELV 396 (507)
Q Consensus 333 ~~~~~~v~~~~~~~~~~~~~~~~~~~~d--~~i~i~d----~~~~~~~~~~~----~~-~~i~-----~~~~s~~~~~l~ 396 (507)
.+|...+..++|+||+ .++++.....+ ..|.+|| +.+++....+. .+ ..+. .+.|+|||+.++
T Consensus 249 ~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~ 327 (719)
T 1z68_A 249 ASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYY 327 (719)
T ss_dssp HTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEE
T ss_pred CCCcceEEEeEEeCCC-eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEE
Confidence 4577889999999996 56665331112 3588999 87777665552 33 3454 789999999776
Q ss_pred EEeccCCC--eEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCC-----CcEEEEecCC
Q psy8285 397 TSHGKQDC--SLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASAD-----ETISIWNCFP 455 (507)
Q Consensus 397 ~~~g~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~ 455 (507)
......+| .|.+||+.+++ ...+..+...+..+.++ +++.|+..+.+ +..++|.+..
T Consensus 328 ~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 328 KIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp EEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred EEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 53233444 67888887766 44565566668887777 88877766654 8899998864
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.87 E-value=8.1e-20 Score=174.58 Aligned_cols=280 Identities=16% Similarity=0.138 Sum_probs=182.9
Q ss_pred cceeeeeeCCCC-EEEEEcCCeEEEEECCCC-----------cee---EEEecCCCCCCceEEEEEccCCCeEEE---Ee
Q psy8285 166 FYTSGLDWGYHD-TLAVALDTSVYTWNTKTN-----------KTQ---LLVEYPTYDNAYISCVAWKPRTTDLAV---TN 227 (507)
Q Consensus 166 ~~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~-----------~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~ 227 (507)
..++.+++++++ +++++....+++|+.... ... ....+. +...|.+++|+|++++|++ ++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVP--MKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEEC--CSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCcccccc--CCCcccEEEEcCCCCEEEEEEecc
Confidence 357789999876 555554444999875321 000 001111 4567999999999999994 33
Q ss_pred CCCCcEEEEeCCCc--------ee---EEEEeecCccEEEEEe--e-CCEEEEEecCCeEEEEECCCCCcCceeeecCCC
Q psy8285 228 TCTEYIDLWHEQEE--------RL---IQKLRTHMHQVIAMCW--N-GNLLSCGTIGGNILHYDVRTHSDYPTAITREGD 293 (507)
Q Consensus 228 ~~dg~i~iwd~~~~--------~~---~~~~~~~~~~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 293 (507)
+.|+.|++||+.++ +. +..+.+|...|.+++| + +++|++++.||+|++||+++.. .......|..
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~-~~~~~~~~~~ 193 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV-KVCATLPSTV 193 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE-EEEEEECGGG
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc-ceeeccCCCC
Confidence 88999999998765 22 4455679999999999 3 7799999999999999999874 3444556888
Q ss_pred ceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecC-------CCCCeeEEEEccCCCcEEEEEccCCCC----
Q psy8285 294 VVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQC-------HLSAVKAIAWCPWEPTLLATGGGICDQ---- 361 (507)
Q Consensus 294 ~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~d~---- 361 (507)
.|++++|+|+|++|++|+ |+.|++||++ + .....+.. |...+.++.|++++..+++...+ +|
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~---~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~--dg~~~~ 267 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L---QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA--DGTLET 267 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT-C---CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET--TCCSSS
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccC-C---cccccccCCcccCCCCceeEEEEEEecCceEEEEEccC--CCccCC
Confidence 999999999999999999 6999999998 3 33333332 23489999999987555554443 43
Q ss_pred --eEEEEeCCCCCe-----eeeee-------cC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc---cEEEEee--
Q psy8285 362 --TVRLWNSMNGKE-----KCHVK-------TD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL---HLIEELK-- 421 (507)
Q Consensus 362 --~i~i~d~~~~~~-----~~~~~-------~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~---~~~~~~~-- 421 (507)
.+++|++++.+. ...+. .. .+...+.+-++.++++++ .+..+.|.|+..... -....+.
T Consensus 268 ~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~-s~~s~dv~vl~~~~~~~~~~~~~~~d~ 346 (434)
T 2oit_A 268 SPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAA-SAASTEVSILARQSDQINWESWLLEDS 346 (434)
T ss_dssp CCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEE-ETTCSBCEEEEECTTSSCEEEEEECGG
T ss_pred CCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEe-cCCCCceeEEEecCCCCccEEEecccc
Confidence 489999986531 11111 11 122234444777777775 445555666654321 0011110
Q ss_pred ----------ccccceeEEEEC---------------CCCCEEEEEeCCCcEEEEecCC
Q psy8285 422 ----------IHQERILSAVLS---------------PDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 422 ----------~~~~~i~~~~~s---------------~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
........+++. |--..|..-+.||.+..|.+..
T Consensus 347 ~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 347 SRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp GCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred ccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 011112233321 1125678889999999999876
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-21 Score=190.43 Aligned_cols=234 Identities=9% Similarity=0.006 Sum_probs=169.0
Q ss_pred CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecC-ccEEEEEee-CCEEEEEec---CCeEEEEECCC--
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHM-HQVIAMCWN-GNLLSCGTI---GGNILHYDVRT-- 280 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~-~~~l~~~~~---dg~i~i~d~~~-- 280 (507)
..+|.+++|+|||+.|++++..||+++||++.+++.. .+..+. ..+..+.|+ ++.+++++. +....+|.++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccC
Confidence 4579999999999999998344999999999666554 444444 688999993 255665654 34456655443
Q ss_pred CCcCceeeecCCCceEEEEEcCCCCE--EEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccC
Q psy8285 281 HSDYPTAITREGDVVCGLKWSPNGRY--LASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGI 358 (507)
Q Consensus 281 ~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 358 (507)
..... .+... ..+...+|+||++. ++++.++.+.+||+.++ +.. .+..+.. .+++|+|||+.+++++...
T Consensus 100 ~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g---~~~-~l~~~~~--~~~~~spDG~~la~~~~~~ 171 (582)
T 3o4h_A 100 PGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGG---GLR-ELARLPG--FGFVSDIRGDLIAGLGFFG 171 (582)
T ss_dssp TTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETT---EEE-EEEEESS--CEEEEEEETTEEEEEEEEE
T ss_pred CCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCC---cEE-EeecCCC--ceEEECCCCCEEEEEEEcC
Confidence 22122 23222 23446688888864 34444566679999876 332 3322333 7999999997777555410
Q ss_pred -CCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCC--eEEEEeCCCccEEEEeeccccceeEEE----
Q psy8285 359 -CDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDC--SLKMWEYPRLHLIEELKIHQERILSAV---- 431 (507)
Q Consensus 359 -~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~---- 431 (507)
....|++||+.+++......+...+..++|+|||+.|++ +..++ .|++||+.+++.. .+..|...+..++
T Consensus 172 ~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~--~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAG--LETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAI 248 (582)
T ss_dssp TTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEE--EECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEE
T ss_pred CCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEE--ccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccc
Confidence 017899999998887644444467899999999999996 66777 8999999998887 7777877777777
Q ss_pred ----ECCCCCEEEEEeCCCcEEEEec
Q psy8285 432 ----LSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 432 ----~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
|+|||.++++++.|+.+++|++
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEET
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 9999988899999999999999
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=9.8e-20 Score=170.78 Aligned_cols=274 Identities=9% Similarity=0.024 Sum_probs=182.5
Q ss_pred EEEEEc--CCeEEEEEC--CCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC-CceeEEEEeec-C
Q psy8285 178 TLAVAL--DTSVYTWNT--KTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ-EERLIQKLRTH-M 251 (507)
Q Consensus 178 ~~~~~~--~~~i~iw~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~-~~~~~~~~~~~-~ 251 (507)
+++++. ++.|++|++ .+++...+..........+..++|+|++++|+++ +.+ .|.+|++. +++........ .
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~-~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGA-AMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEE-EBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEE-ccc-eEEEEEECCCCCEEEeeEeecC
Confidence 444553 256887764 5666544433211033467899999999999888 666 99999997 77665433211 1
Q ss_pred ccEEEEEe--eCCE--EEEEe-------------cCCeEEEEECCCCCcCceeee----cCCCceEEEEEcCCCCEEEEE
Q psy8285 252 HQVIAMCW--NGNL--LSCGT-------------IGGNILHYDVRTHSDYPTAIT----REGDVVCGLKWSPNGRYLASG 310 (507)
Q Consensus 252 ~~v~~~~~--~~~~--l~~~~-------------~dg~i~i~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~ 310 (507)
+....++| +++. ++++. .++.+.+|++.........+. .+...+.+++|+|||++++++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 22334566 6774 44543 689999999974322222222 245678999999999998877
Q ss_pred e--CCcEEEEEcC-CCCCCCCeeeec--CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC--CCCeee---eee--
Q psy8285 311 S--NNTVKIWDFR-QLDAKRPQVNNQ--CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM--NGKEKC---HVK-- 378 (507)
Q Consensus 311 ~--d~~i~i~d~~-~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~~~~---~~~-- 378 (507)
. ++.|++||+. ++.. ..+..+. .+...+..++|+|+|+.++++... ++.|.+|++. +++... .+.
T Consensus 163 ~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~--~~~v~v~~~~~~~g~~~~~~~~~~~~ 239 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEV-ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA--GNRICEYVIDPATHMPVYTHHSFPLI 239 (365)
T ss_dssp ETTTTEEEEEEECTTSCE-EEEEEEECSSTTCCEEEEEECTTSSEEEEEETT--TTEEEEEEECTTTCCEEEEEEEEESS
T ss_pred cCCCCEEEEEEECCCCCE-EEeeeEecCCCCCCCCEeEECCCCCEEEEEECC--CCeEEEEEEeCCCCcEEEccceEEcC
Confidence 6 3899999998 5411 1122232 245678999999999877776653 7899999765 565421 221
Q ss_pred -cC----C-------CeEEEE-ECCCCCeEEEEeccCC----CeEEEEeCC-CccEEE---EeeccccceeEEEECC---
Q psy8285 379 -TD----S-------QVTSIL-WSEQYRELVTSHGKQD----CSLKMWEYP-RLHLIE---ELKIHQERILSAVLSP--- 434 (507)
Q Consensus 379 -~~----~-------~i~~~~-~s~~~~~l~~~~g~~d----~~i~v~d~~-~~~~~~---~~~~~~~~i~~~~~s~--- 434 (507)
.. . .+..++ |+|||++|+++....+ +.|.+|++. +++... ....+......++|+|
T Consensus 240 ~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~ 319 (365)
T 1jof_A 240 PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW 319 (365)
T ss_dssp CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT
T ss_pred CCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCc
Confidence 11 2 478999 9999999987422222 289999986 565443 2333455577899999
Q ss_pred CCCEEEEEeCC-CcEEEEecCCC
Q psy8285 435 DQTCVAAASAD-ETISIWNCFPR 456 (507)
Q Consensus 435 ~~~~l~s~~~d-g~i~iw~~~~~ 456 (507)
||++|++++.+ +.|.+|++...
T Consensus 320 dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 320 SDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCEEEEEEcCCCeEEEEEEchh
Confidence 89999998864 89999999765
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-20 Score=171.74 Aligned_cols=227 Identities=11% Similarity=0.100 Sum_probs=156.4
Q ss_pred eeeCCCC--EEEEE-cCCeEEEEECCCCceeEEEecCCCC----CCceEEEEEccCCCeEEEEeCCC------------C
Q psy8285 171 LDWGYHD--TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYD----NAYISCVAWKPRTTDLAVTNTCT------------E 231 (507)
Q Consensus 171 ~~~s~~~--~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~d------------g 231 (507)
++|+|++ +++++ .++.|++||+.+++......... . ...+..++|+|+|++++++ +.+ +
T Consensus 48 ~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~-~~~~~~~~~~~~~~~~ 125 (349)
T 1jmx_B 48 AMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS-VPGEVGRSMYSFAISPDGKEVYAT-VNPTQRLNDHYVVKPP 125 (349)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC-STTEEEECSSCEEECTTSSEEEEE-EEEEEECSSCEEECCC
T ss_pred eEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc-ccccccccccceEECCCCCEEEEE-cccccccccccccCCC
Confidence 5666765 33333 67899999999988776665431 1 2347889999999999998 543 8
Q ss_pred cEEEEeCCCcee---EEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCC--------------
Q psy8285 232 YIDLWHEQEERL---IQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREG-------------- 292 (507)
Q Consensus 232 ~i~iwd~~~~~~---~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------------- 292 (507)
.|.+||+.+++. +..+. +...+.+++| +++ +++++ +.|.+||+.+++. ...+..+.
T Consensus 126 ~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 200 (349)
T 1jmx_B 126 RLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKY-TVALPLRNWNRKGYSAPDVLYF 200 (349)
T ss_dssp EEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCE-EEEECSTTCCCTTBCCCBCCCC
T ss_pred eEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCce-eccccccccCCccccCccceee
Confidence 999999988543 33333 3345778888 677 55554 4499999987652 22222211
Q ss_pred -------C---ceEEEEEcCCCCEE----------EEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEcc-CCC
Q psy8285 293 -------D---VVCGLKWSPNGRYL----------ASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCP-WEP 349 (507)
Q Consensus 293 -------~---~v~~~~~~~~~~~l----------~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 349 (507)
. ....+++++++... +... . +.+.++++. .+...+..++|+| +++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~sp~dg~ 268 (349)
T 1jmx_B 201 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA------------DLTELYFTGLRSPKDPN 268 (349)
T ss_dssp CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE------------ECSSCEEEEEECSSCTT
T ss_pred ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc------------cCCCcceeeEecCCCCC
Confidence 0 34456777654221 1111 2 445544442 2455788999999 997
Q ss_pred cEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc
Q psy8285 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH 423 (507)
Q Consensus 350 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~ 423 (507)
.++++ ++.|.+||+.+++.+..+.....+.+++|+|++++|++ ++.++.|++||+.+++.+..+..+
T Consensus 269 ~l~~~-----~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~--~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 269 QIYGV-----LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYL--GGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEE-----ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEE--ESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEEE-----cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEE--ecCCCeEEEEeccccceeeeeecC
Confidence 66654 67999999999998888877767889999999999998 567899999999999988887654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.1e-18 Score=161.64 Aligned_cols=258 Identities=12% Similarity=0.107 Sum_probs=173.5
Q ss_pred eeeeeCCCC--EEEEEcC----CeEEEEECCC--CceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC
Q psy8285 169 SGLDWGYHD--TLAVALD----TSVYTWNTKT--NKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 169 ~~~~~s~~~--~~~~~~~----~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
..++|+|++ +++++.+ +.|.+|++.. ++...+..... +......+++ ++++|++++..++.|.+|++..
T Consensus 53 ~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~-~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~ 129 (361)
T 3scy_A 53 SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKT-MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQ 129 (361)
T ss_dssp CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEEC-SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCT
T ss_pred ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEecc-CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCC
Confidence 358999998 4455553 7999998765 55555544443 4556777888 8888888856789999999975
Q ss_pred ceeEEE----Ee--e--------cCccEEEEEe--eCCEEEEEe-cCCeEEEEECCCCCc------C------ceeeecC
Q psy8285 241 ERLIQK----LR--T--------HMHQVIAMCW--NGNLLSCGT-IGGNILHYDVRTHSD------Y------PTAITRE 291 (507)
Q Consensus 241 ~~~~~~----~~--~--------~~~~v~~~~~--~~~~l~~~~-~dg~i~i~d~~~~~~------~------~~~~~~~ 291 (507)
...+.. .. + +...+.+++| +++++++++ .++.|.+|++..... . .......
T Consensus 130 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 209 (361)
T 3scy_A 130 DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP 209 (361)
T ss_dssp TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT
T ss_pred CCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC
Confidence 432211 11 1 1223577888 688665555 478999999876542 1 1122334
Q ss_pred CCceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCeee---ecCCCCCeeEEEEccCCCcEEEEEccCC-CCeEEE
Q psy8285 292 GDVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQVN---NQCHLSAVKAIAWCPWEPTLLATGGGIC-DQTVRL 365 (507)
Q Consensus 292 ~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~-d~~i~i 365 (507)
......++|+|||+++++++ ++.|.+||+.++.. ..+.. ...+......++|+|+|++++++.. . ++.|.+
T Consensus 210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~--~~~~~i~v 286 (361)
T 3scy_A 210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR--LKADGVAI 286 (361)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC--SSSCEEEE
T ss_pred CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEeEEEecCCCCCCCcccEEECCCCCEEEEECC--CCCCEEEE
Confidence 55678999999999888777 49999999985411 11222 2233455789999999987766654 2 478999
Q ss_pred EeCC--CCC--eeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEE--eCCCccEEEEe-eccccceeEEEEC
Q psy8285 366 WNSM--NGK--EKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW--EYPRLHLIEEL-KIHQERILSAVLS 433 (507)
Q Consensus 366 ~d~~--~~~--~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~--d~~~~~~~~~~-~~~~~~i~~~~~s 433 (507)
|++. +++ .+..+.....+..++|+|+|++|+++ +..++.|.+| |..+++..... ..+...+.++.|.
T Consensus 287 ~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~-~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 287 FKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVA-CRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEE-ETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEE-ECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 9985 444 33444444567899999999999885 4467899996 44566655443 2244567888875
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-20 Score=177.44 Aligned_cols=214 Identities=17% Similarity=0.221 Sum_probs=154.5
Q ss_pred CcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCC-------c-------CceeeecCCCc
Q psy8285 231 EYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHS-------D-------YPTAITREGDV 294 (507)
Q Consensus 231 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~-------~-------~~~~~~~~~~~ 294 (507)
+.+++|+.... + ....+..+++ ++.++++++.++ +++|+..... . .......+...
T Consensus 23 ~~vri~~~~~~-----~--~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-----L--PKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-----C--CCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-----c--CCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 46777764321 1 2223455555 688899998887 8887753210 0 01112235667
Q ss_pred eEEEEEcCCCCEEE----EEe-CCcEEEEEcCCC-----CCCC---CeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC
Q psy8285 295 VCGLKWSPNGRYLA----SGS-NNTVKIWDFRQL-----DAKR---PQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ 361 (507)
Q Consensus 295 v~~~~~~~~~~~l~----~~~-d~~i~i~d~~~~-----~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~ 361 (507)
|.+++|+|++++|+ +++ |+.|++||+++. ...+ .+..+.+|...|.+++|+|++..++++++. |+
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~--Dg 172 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA--DG 172 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET--TS
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC--CC
Confidence 99999999999999 666 599999998754 1111 245566789999999999986677777765 99
Q ss_pred eEEEEeCCCCCeeeeeec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc-------ccceeEEEEC
Q psy8285 362 TVRLWNSMNGKEKCHVKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH-------QERILSAVLS 433 (507)
Q Consensus 362 ~i~i~d~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~-------~~~i~~~~~s 433 (507)
+|++||++++........ ...+.+++|+|+|++|++ |+.||.|++||.+ ++....+..| ...|.++.|+
T Consensus 173 ~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~las--gs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 173 SIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAV--GKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp CEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEE--EETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred eEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEE--EcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence 999999998866554444 368999999999999999 8899999999998 5555555433 3379999999
Q ss_pred CCCCEEEE-EeCCC------cEEEEecCCCC
Q psy8285 434 PDQTCVAA-ASADE------TISIWNCFPRD 457 (507)
Q Consensus 434 ~~~~~l~s-~~~dg------~i~iw~~~~~~ 457 (507)
+++.++++ .+.|| .+++|++...+
T Consensus 250 ~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 250 GTYVFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp ETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred cCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence 99887754 33443 38999998654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=7.4e-19 Score=180.44 Aligned_cols=275 Identities=14% Similarity=0.187 Sum_probs=189.0
Q ss_pred eeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCC--CCCceEEEEEccCCCeEEEEeCCC---------CcEEEE
Q psy8285 169 SGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTY--DNAYISCVAWKPRTTDLAVTNTCT---------EYIDLW 236 (507)
Q Consensus 169 ~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~d---------g~i~iw 236 (507)
..+.|+||+ +++.+ ++.|++||+.+++...++..... .......+.|||||++|+.+ +.+ +.+.+|
T Consensus 20 ~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~-~~~~~~~r~~~~~~~~~~ 97 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLE-YNYVKQWRHSYTASYDIY 97 (740)
T ss_dssp CCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEE-EEEEECSSSCEEEEEEEE
T ss_pred cccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEE-ECCeeeEEEccceEEEEE
Confidence 368999998 55555 99999999999987666554210 11123458999999999988 554 677899
Q ss_pred eCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCce-----------------EE
Q psy8285 237 HEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVV-----------------CG 297 (507)
Q Consensus 237 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v-----------------~~ 297 (507)
|+.+++.. .+..+...+...+| ||+.||.+. ++.|++|++.++........++...+ ..
T Consensus 98 d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~ 175 (740)
T 4a5s_A 98 DLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (740)
T ss_dssp ETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred ECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcc
Confidence 99998754 35667778999999 799998885 78999999987652221222222222 34
Q ss_pred EEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC---CC
Q psy8285 298 LKWSPNGRYLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN---GK 372 (507)
Q Consensus 298 ~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---~~ 372 (507)
+.|||||+.|+.++ | ..+.+|++....... .+...+..+.+.+.|.. . ...+|++||+.+ ++
T Consensus 176 ~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~------~~~~~~~~~~yp~~G~~-----~--~~~~l~v~d~~~~~~~~ 242 (740)
T 4a5s_A 176 LWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES------LQYPKTVRVPYPKAGAV-----N--PTVKFFVVNTDSLSSVT 242 (740)
T ss_dssp EEECTTSSEEEEEEEECTTCCEEEEEECCSTT------CSSCEEEEEECCBTTSC-----C--CEEEEEEEETTSCCSSS
T ss_pred eEECCCCCEEEEEEEcccCCceEEEEeecCCC------CCCCcceeecCCCCcCc-----C--CeeEEEEEECCCCCCCC
Confidence 89999999999987 5 779999875431111 34556677888777632 1 145799999998 73
Q ss_pred --eeeeee-------cCCCeEEEEECCCCCeEEEEec--cCCCeEEEEeCCCcc----EE--EEe--ecccccee-----
Q psy8285 373 --EKCHVK-------TDSQVTSILWSEQYRELVTSHG--KQDCSLKMWEYPRLH----LI--EEL--KIHQERIL----- 428 (507)
Q Consensus 373 --~~~~~~-------~~~~i~~~~~s~~~~~l~~~~g--~~d~~i~v~d~~~~~----~~--~~~--~~~~~~i~----- 428 (507)
....+. ....+..++|+|||+.++.... ..+..|++||+.+++ +. ..+ ..|...|.
T Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~ 322 (740)
T 4a5s_A 243 NATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS 322 (740)
T ss_dssp CCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC
T ss_pred cceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCC
Confidence 222332 2346899999999997665322 233479999998887 22 222 34555544
Q ss_pred EEEECCCCCEEE-EEeC-CC--cEEEEecCCCCccc
Q psy8285 429 SAVLSPDQTCVA-AASA-DE--TISIWNCFPRDKKR 460 (507)
Q Consensus 429 ~~~~s~~~~~l~-s~~~-dg--~i~iw~~~~~~~~~ 460 (507)
.+.|+|||+.|+ ..+. +| .|++|++..++...
T Consensus 323 ~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~ 358 (740)
T 4a5s_A 323 EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF 358 (740)
T ss_dssp CCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred CceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence 789999999877 6654 33 57888887665443
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-17 Score=159.56 Aligned_cols=284 Identities=12% Similarity=0.019 Sum_probs=197.2
Q ss_pred eeeCCCC--EEEEEcCCeEEEEECC--CCceeEEEecCCCCCCceEEEEEc----cCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 171 LDWGYHD--TLAVALDTSVYTWNTK--TNKTQLLVEYPTYDNAYISCVAWK----PRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 171 ~~~s~~~--~~~~~~~~~i~iw~~~--~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
+.++||+ +++++.++.|.+||+. +++....+.. ......++|+ |+|+++++++..++.|.++|..+.+
T Consensus 202 v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~----G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~ 277 (567)
T 1qks_A 202 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI----GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE 277 (567)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC----CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred eEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec----CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence 3444554 5556788999999996 6665554442 3356899999 6999999986677999999999999
Q ss_pred eEEEEeec-----------CccEEEEEe--e-CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEE
Q psy8285 243 LIQKLRTH-----------MHQVIAMCW--N-GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLA 308 (507)
Q Consensus 243 ~~~~~~~~-----------~~~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 308 (507)
.+..+... ...+..+.. + ...++.....|.|.++|...................++.|+|++++++
T Consensus 278 ~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~ 357 (567)
T 1qks_A 278 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFI 357 (567)
T ss_dssp EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEE
T ss_pred EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEE
Confidence 88876531 125666665 2 445666667799999998765422222223445677899999999988
Q ss_pred EEe-C-CcEEEEEcCCCCCCCCeeeecC-----CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC-------CCee
Q psy8285 309 SGS-N-NTVKIWDFRQLDAKRPQVNNQC-----HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-------GKEK 374 (507)
Q Consensus 309 ~~~-d-~~i~i~d~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-------~~~~ 374 (507)
++. . +.|.++|+.++ +....+.. |.+.-..+ ++|++..+++++. ..++.|.++|..+ .+.+
T Consensus 358 va~~~sn~V~ViD~~t~---kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~-~g~~~Vsvid~~~~~~~~~~~kvv 432 (567)
T 1qks_A 358 TAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSH-MGDDSVALIGTDPEGHPDNAWKIL 432 (567)
T ss_dssp EEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSEE
T ss_pred EEeCCCCeEEEEECCCC---cEEEEEeccCcCCCCccceee-ECCCCCcEEEeCC-CCCCeEEEecCCCCCCccccCEEE
Confidence 877 3 99999999987 43333322 33222222 5787666766653 1278999999987 5677
Q ss_pred eeeecCC-CeEEEEECCCCCeEEEEec-cC----CCeEEEEeCCCc-----cE-EEEee--------ccccceeEEEECC
Q psy8285 375 CHVKTDS-QVTSILWSEQYRELVTSHG-KQ----DCSLKMWEYPRL-----HL-IEELK--------IHQERILSAVLSP 434 (507)
Q Consensus 375 ~~~~~~~-~i~~~~~s~~~~~l~~~~g-~~----d~~i~v~d~~~~-----~~-~~~~~--------~~~~~i~~~~~s~ 434 (507)
..+...+ .-..+..+|+++++.+... .. .++|.++|+.+. .. ...+. .....+..+.|+|
T Consensus 433 ~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (567)
T 1qks_A 433 DSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK 512 (567)
T ss_dssp EEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT
T ss_pred EEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC
Confidence 7777653 3355788999999998421 11 469999999876 21 12232 1235788999999
Q ss_pred CCCEEEEEe-----CCCcEEEEecCCCCccccee
Q psy8285 435 DQTCVAAAS-----ADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 435 ~~~~l~s~~-----~dg~i~iw~~~~~~~~~~~~ 463 (507)
+|+.+..+. .++.|.|+|..+.+....++
T Consensus 513 ~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 513 DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 999876653 37899999999988766554
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-18 Score=160.02 Aligned_cols=246 Identities=9% Similarity=0.038 Sum_probs=170.9
Q ss_pred CCeEEEEECCCCceeEEEecCCC---CCCceEEEEEccCCCeEEEEeCC-CCcEEEEeCCCceeEEE-EeecCccEEEEE
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTY---DNAYISCVAWKPRTTDLAVTNTC-TEYIDLWHEQEERLIQK-LRTHMHQVIAMC 258 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~-dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~ 258 (507)
++.|.+||..+++....+..... +......++|+|+|++|+++... ++.|.+||+.+++.+.. +.. ... ..+.
T Consensus 80 ~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~~-~~v~ 157 (361)
T 2oiz_A 80 SDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AGC-WSVI 157 (361)
T ss_dssp EEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TTE-EEEE
T ss_pred CCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CCc-ceeE
Confidence 56799999998887766654310 12356789999999999998333 68999999999988877 542 222 1122
Q ss_pred e--e-CCEEEEEecCCeEEEEECCCCCcCc------eeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCC
Q psy8285 259 W--N-GNLLSCGTIGGNILHYDVRTHSDYP------TAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRP 328 (507)
Q Consensus 259 ~--~-~~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~ 328 (507)
+ + ...+++.+.||.+.+|++....... ..+.....++ .+.+++++..++..+ ++.|.++|+..... ..
T Consensus 158 ~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-~~ 235 (361)
T 2oiz_A 158 PQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV-KV 235 (361)
T ss_dssp ECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC-EE
T ss_pred EcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc-ee
Confidence 2 3 4678888899999999986532222 1111222222 233467777776666 58999999875410 11
Q ss_pred eeeecC------C----CCCeeEEEEccCCCcEEEEEcc--------CCCCeEEEEeCCCCCeeeeeecCCCeEEEEECC
Q psy8285 329 QVNNQC------H----LSAVKAIAWCPWEPTLLATGGG--------ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSE 390 (507)
Q Consensus 329 ~~~~~~------~----~~~v~~~~~~~~~~~~~~~~~~--------~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~ 390 (507)
...+.. + ......++|+|++++++++... .....|.+||+.+++.+..+..+. +..++|+|
T Consensus 236 ~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~sp 314 (361)
T 2oiz_A 236 DGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQ 314 (361)
T ss_dssp EEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEET
T ss_pred cccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECC
Confidence 111110 0 1122237899998888876530 013589999999999999998888 99999999
Q ss_pred CCCeEEEEeccCCCeEEEEeCCCc--cEEEEeeccccceeEEEECCCCC
Q psy8285 391 QYRELVTSHGKQDCSLKMWEYPRL--HLIEELKIHQERILSAVLSPDQT 437 (507)
Q Consensus 391 ~~~~l~~~~g~~d~~i~v~d~~~~--~~~~~~~~~~~~i~~~~~s~~~~ 437 (507)
+|++|++ +.. +.|.+||..++ +.+..+..+......++++|+|+
T Consensus 315 dg~~l~v--~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 315 QRNLMLT--LDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTTEEEE--ECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CCCEEEE--eCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 9999998 444 99999999999 99988866667778899999986
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-19 Score=168.32 Aligned_cols=274 Identities=9% Similarity=-0.024 Sum_probs=179.4
Q ss_pred eeeeeeCCCC-EEE-EEc---CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 168 TSGLDWGYHD-TLA-VAL---DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 168 i~~~~~s~~~-~~~-~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
+..++||||+ .++ +.. +..|++|++.+++...+... +......+.|+|+|++|+.+ +.++.|++||+.+++
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~---~~~~~~~~~~spdg~~l~~~-~~~~~l~~~d~~~~~ 113 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEG---KGDNTFGGFISTDERAFFYV-KNELNLMKVDLETLE 113 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCS---SCBCTTTCEECTTSSEEEEE-ETTTEEEEEETTTCC
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecC---CCCccccceECCCCCEEEEE-EcCCcEEEEECCCCC
Confidence 5568899998 444 332 23799999988876544321 22223347899999999988 788899999999887
Q ss_pred eEEEEeecCccEEE---EE----------------e--eCCEEEEE-----ecCCeEEEEECCCCCcCceeeecCCCceE
Q psy8285 243 LIQKLRTHMHQVIA---MC----------------W--NGNLLSCG-----TIGGNILHYDVRTHSDYPTAITREGDVVC 296 (507)
Q Consensus 243 ~~~~~~~~~~~v~~---~~----------------~--~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 296 (507)
.......+...... +. | +++.++.. ..+..|++||+.+++ ...+..+...+.
T Consensus 114 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~~~~~~~~~~ 191 (396)
T 3c5m_A 114 EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE--LEVIHQDTAWLG 191 (396)
T ss_dssp EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC--EEEEEEESSCEE
T ss_pred cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc--EEeeccCCcccc
Confidence 66555544432111 11 1 23333222 345679999998765 333445667789
Q ss_pred EEEEcC-CCCEEEEEeC-------CcEEEEEcCCCCCCCCeeeecCC--CCCeeEEEEccCCCcEEEEEccCCC--CeEE
Q psy8285 297 GLKWSP-NGRYLASGSN-------NTVKIWDFRQLDAKRPQVNNQCH--LSAVKAIAWCPWEPTLLATGGGICD--QTVR 364 (507)
Q Consensus 297 ~~~~~~-~~~~l~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~d--~~i~ 364 (507)
.+.|+| +++.|+..++ ..|.+||+..+ . ...+..+ ...+..+.|+|+|+.+++....... +.|+
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~---~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~ 267 (396)
T 3c5m_A 192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS---N-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY 267 (396)
T ss_dssp EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC---C-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred cceECCCCCCEEEEEecCCCCCCCceEEEEECCCC---c-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence 999999 7887776652 36888888654 2 2233222 2357889999999887776542112 4599
Q ss_pred EEeCCCCCeeeeeecCCCeEEEEECC-CCCeEEEEec--------------cCCCeEEEEeCCCccEEEEeecccc----
Q psy8285 365 LWNSMNGKEKCHVKTDSQVTSILWSE-QYRELVTSHG--------------KQDCSLKMWEYPRLHLIEELKIHQE---- 425 (507)
Q Consensus 365 i~d~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~g--------------~~d~~i~v~d~~~~~~~~~~~~~~~---- 425 (507)
+||+.+++........ ... +.|+| +|+++++... ..+..|++||+.+++. ..+..+..
T Consensus 268 ~~d~~~g~~~~l~~~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~ 344 (396)
T 3c5m_A 268 KANPETLENEEVMVMP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDV 344 (396)
T ss_dssp EECTTTCCEEEEEECC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCC
T ss_pred EEECCCCCeEEeeeCC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCCcccc
Confidence 9999888765433322 233 89999 9998876311 1347899999988764 34444443
Q ss_pred -------ceeEEEECCCCCEEEEEeC-CCcEEEEecC
Q psy8285 426 -------RILSAVLSPDQTCVAAASA-DETISIWNCF 454 (507)
Q Consensus 426 -------~i~~~~~s~~~~~l~s~~~-dg~i~iw~~~ 454 (507)
.+..++|+|||+.|+.++. ++...+|.+.
T Consensus 345 ~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 345 LDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 2567899999998887764 5555565543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.8e-19 Score=167.24 Aligned_cols=263 Identities=10% Similarity=-0.005 Sum_probs=176.1
Q ss_pred EECCCCceeEEEecCCCCCCceEE-----EEEccCCCeEEEEeCCCC--cEEEEeCCCceeEEEEeecCccEEEEEe--e
Q psy8285 190 WNTKTNKTQLLVEYPTYDNAYISC-----VAWKPRTTDLAVTNTCTE--YIDLWHEQEERLIQKLRTHMHQVIAMCW--N 260 (507)
Q Consensus 190 w~~~~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~ 260 (507)
++..++.....++ . +...... .+|+|||++|+.++..+| .|.+||+.+++.......+...+..+.| |
T Consensus 15 ~~~~~g~~~~~lt--~-~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spd 91 (388)
T 3pe7_A 15 QDASTGAQVTRLT--P-PDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPD 91 (388)
T ss_dssp ECTTTCCEEEECS--C-TTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTT
T ss_pred ecCCCCcceEEec--C-CcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCC
Confidence 4556665444333 2 4444555 789999999999833366 4888899998877766666555544556 8
Q ss_pred CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEE--EcCCCCEEEEEe-----------------------CCcE
Q psy8285 261 GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLK--WSPNGRYLASGS-----------------------NNTV 315 (507)
Q Consensus 261 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~-----------------------d~~i 315 (507)
++.|+.++.++.|++||+.+++ .......+...+.... ++|++++++... +..|
T Consensus 92 g~~l~~~~~~~~l~~~d~~~g~-~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (388)
T 3pe7_A 92 DDALFYVKDGRNLMRVDLATLE-ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL 170 (388)
T ss_dssp SSEEEEEETTTEEEEEETTTCC-EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCc-ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence 9999999999999999999876 3334444455454333 489999887421 2679
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCeeEEEEcc-CCCcEEEEEccCC---CCeEEEEeCCCCCeeeeeecC--CCeEEEEEC
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCP-WEPTLLATGGGIC---DQTVRLWNSMNGKEKCHVKTD--SQVTSILWS 389 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~s 389 (507)
++||+.++ ....+..+...+..+.|+| +++.++.+..+.. ...|.++|...++........ ..+..+.|+
T Consensus 171 ~~~d~~~g----~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s 246 (388)
T 3pe7_A 171 MRVDLKTG----ESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWV 246 (388)
T ss_dssp EEEETTTC----CEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEEC
T ss_pred EEEECCCC----ceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceEC
Confidence 99999876 3444445667889999999 9977766654211 347888888766554433333 247789999
Q ss_pred CCCCeEEEEeccCC---CeEEEEeCCCccE--EEEeeccccc---eeEEEECCCCCEEEEE---------eCCCcEEEEe
Q psy8285 390 EQYRELVTSHGKQD---CSLKMWEYPRLHL--IEELKIHQER---ILSAVLSPDQTCVAAA---------SADETISIWN 452 (507)
Q Consensus 390 ~~~~~l~~~~g~~d---~~i~v~d~~~~~~--~~~~~~~~~~---i~~~~~s~~~~~l~s~---------~~dg~i~iw~ 452 (507)
|||+.|+..+.... ..|++||+.+++. +..+.++... ...+.|+|||+.|+.. ..+..|++||
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 247 PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 99998876422112 2399999998874 3333331111 2234799999988754 4567899999
Q ss_pred cCCCCccc
Q psy8285 453 CFPRDKKR 460 (507)
Q Consensus 453 ~~~~~~~~ 460 (507)
+.+++...
T Consensus 327 ~~~~~~~~ 334 (388)
T 3pe7_A 327 MKNGTQHR 334 (388)
T ss_dssp TTTTEEEE
T ss_pred ccCCceEE
Confidence 98876543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-17 Score=151.46 Aligned_cols=240 Identities=11% Similarity=0.086 Sum_probs=182.2
Q ss_pred CCceEEEEEccCCCeEEEEeCCC------------------------CcEEEEeCCCceeEEEEe-ecCccEEEEEe--e
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCT------------------------EYIDLWHEQEERLIQKLR-THMHQVIAMCW--N 260 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~d------------------------g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~ 260 (507)
-..+.+++++|+|+.+++. ..+ +.|.+||..+++.+..+. .+......+++ +
T Consensus 23 l~~v~~va~d~~G~l~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFH-RGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEE-CTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECCCCCEEEEe-CCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 4568999999999887776 555 479999999888876654 34457888888 5
Q ss_pred CCEEEEEecCCeEEEEECCCCCcCceee---------ecCCCceEEEEEcC-CCCEEEEEe--CCcEEEEEcCCCCCCCC
Q psy8285 261 GNLLSCGTIGGNILHYDVRTHSDYPTAI---------TREGDVVCGLKWSP-NGRYLASGS--NNTVKIWDFRQLDAKRP 328 (507)
Q Consensus 261 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~--d~~i~i~d~~~~~~~~~ 328 (507)
++++++...++.|++||..........+ ..+......++++| +++++++.+ ++.|++||.. + ..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g---~~ 177 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-G---KF 177 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-S---CE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-C---CE
Confidence 7888888888999999987543233333 23444688999999 888888875 4999999944 3 44
Q ss_pred eeeecC----------CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECC-----
Q psy8285 329 QVNNQC----------HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSE----- 390 (507)
Q Consensus 329 ~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~----- 390 (507)
+..+.. +......++++|++..++++..+ ++.|++||..+++.+..+... ..+..++++|
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~--~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~ 255 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE--NGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFA 255 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT--TTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEE
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC--CCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEE
Confidence 444432 22348899999996688888765 899999999989988877533 4688999999
Q ss_pred -CCCeEEEEeccCCCeEEEEeCCCccEEEEee---ccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 391 -QYRELVTSHGKQDCSLKMWEYPRLHLIEELK---IHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 391 -~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
+|+..++ ...+..|++||..+++.+..+. ++......++++|+|..+++...++.|++|++...
T Consensus 256 ~~g~~~v~--~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 256 VNGKPYFG--DQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EECCCCTT--CSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred eCCCEEec--cCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 3332222 3445689999999999988873 56677899999999988888888999999998653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-16 Score=142.83 Aligned_cols=236 Identities=14% Similarity=0.139 Sum_probs=171.2
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee------cCccEEEEEee---CCEEEEEec-CCeEEEE
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT------HMHQVIAMCWN---GNLLSCGTI-GGNILHY 276 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~------~~~~v~~~~~~---~~~l~~~~~-dg~i~i~ 276 (507)
+-..+.+++++++++.+++. ..++.|.+||.. ++.+..+.. +...+..++++ ++++++... ++.|.+|
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~-~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVAD-TNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEE-GGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECCCCCEEEEE-CCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 45678999999999877776 788999999987 566655542 33567888882 444444433 7899999
Q ss_pred ECCCCCcCceeee-cCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeec--CCCCCeeEEEEccCCCcEE
Q psy8285 277 DVRTHSDYPTAIT-REGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQ--CHLSAVKAIAWCPWEPTLL 352 (507)
Q Consensus 277 d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~ 352 (507)
|.. ++ ....+. .+...+.+++++|+++++++.. ++.|.+||... +.+..+. .+...+..++++|++ .++
T Consensus 106 d~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~p~~i~~~~~g-~l~ 178 (286)
T 1q7f_A 106 NQY-GQ-FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG----NVLHKFGCSKHLEFPNGVVVNDKQ-EIF 178 (286)
T ss_dssp CTT-SC-EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS----CEEEEEECTTTCSSEEEEEECSSS-EEE
T ss_pred CCC-Cc-EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC----CEEEEeCCCCccCCcEEEEECCCC-CEE
Confidence 943 33 223332 3345789999999999777766 48999999653 3444442 344568999999998 466
Q ss_pred EEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECCCCCeEEEEeccCCC-eEEEEeCCCccEEEEeecccc--c
Q psy8285 353 ATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSEQYRELVTSHGKQDC-SLKMWEYPRLHLIEELKIHQE--R 426 (507)
Q Consensus 353 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~g~~d~-~i~v~d~~~~~~~~~~~~~~~--~ 426 (507)
++... ++.|++||. +++.+..+... ..+..++++++|+.+++ ...++ .|.+||. +++.+..+..+.. .
T Consensus 179 v~~~~--~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~--~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 252 (286)
T 1q7f_A 179 ISDNR--AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIA--DNHNNFNLTIFTQ-DGQLISALESKVKHAQ 252 (286)
T ss_dssp EEEGG--GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEE--ECSSSCEEEEECT-TSCEEEEEEESSCCSC
T ss_pred EEECC--CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEE--eCCCCEEEEEECC-CCCEEEEEcccCCCCc
Confidence 66554 899999997 55666666443 46899999999987777 55565 9999995 5677777765433 4
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 427 ILSAVLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 427 i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
+.+++++|+|+++++ +.|+.|++|++....+
T Consensus 253 ~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 253 CFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP 283 (286)
T ss_dssp EEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred ceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence 779999999987776 6799999999866443
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-17 Score=153.44 Aligned_cols=263 Identities=8% Similarity=0.015 Sum_probs=180.4
Q ss_pred cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC---------CCCcEEEEeCCCceeEEEEeec---
Q psy8285 183 LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT---------CTEYIDLWHEQEERLIQKLRTH--- 250 (507)
Q Consensus 183 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------~dg~i~iwd~~~~~~~~~~~~~--- 250 (507)
.|+.|++||..+++....+.. +..+ .++|+|++++++++.. .++.|.+||..+++.+..+...
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~---g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~ 103 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPT---AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR 103 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEEC---CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB
T ss_pred ccCeEEEEECCCCeEEEEecC---CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc
Confidence 367999999999887655543 3333 8999999999999831 2567999999999888887643
Q ss_pred ---CccEEEEEe--eCCEEEEEec--CCeEEEEECCCCCcCcee-eecCCCceEEEEEcCCC-CEEEEEe-CCcEEEEEc
Q psy8285 251 ---MHQVIAMCW--NGNLLSCGTI--GGNILHYDVRTHSDYPTA-ITREGDVVCGLKWSPNG-RYLASGS-NNTVKIWDF 320 (507)
Q Consensus 251 ---~~~v~~~~~--~~~~l~~~~~--dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~ 320 (507)
......+++ ++++|+++.. ++.|.+||+.+.+ .... +. .. ....+.+.|++ ..+++.+ ||.+.+|+.
T Consensus 104 ~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~-~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~ 180 (361)
T 2oiz_A 104 VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD-YVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINL 180 (361)
T ss_dssp CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE-EEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEE
T ss_pred cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc-EEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEE
Confidence 223445666 7999988874 5789999999875 3333 22 22 22335667765 4555555 688999988
Q ss_pred CCCCCCCCe------eeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCee--eeeec-----------CC
Q psy8285 321 RQLDAKRPQ------VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK--CHVKT-----------DS 381 (507)
Q Consensus 321 ~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~-----------~~ 381 (507)
.... +.. ..+.....++ .+.++|++..++.... ++.+.++|+...+.. ..+.. ..
T Consensus 181 ~~~g--~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~---~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 254 (361)
T 2oiz_A 181 GEDG--KVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSY---YGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPG 254 (361)
T ss_dssp CTTS--SEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBT---TSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEEC
T ss_pred CCCC--cEeeeccccceEcCCCCce-EEEecccCCEEEEEeC---CCeEEEEEecCCCceecccccccCccccccccccC
Confidence 6521 222 1112122222 3344677766666553 889999998765422 11111 01
Q ss_pred CeEEEEECCCCCeEEEEec-c--------CCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 382 QVTSILWSEQYRELVTSHG-K--------QDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g-~--------~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
....++++|+++.++++.. . ..+.|.+||+.+++.+..+..+. ..+++|+|||++|++++. +.|.+||
T Consensus 255 g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D 331 (361)
T 2oiz_A 255 GYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYD 331 (361)
T ss_dssp CSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEE
T ss_pred CeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEE
Confidence 1123789999998887421 0 13589999999999999998877 899999999999998887 9999999
Q ss_pred cCCC--Ccccce
Q psy8285 453 CFPR--DKKRKA 462 (507)
Q Consensus 453 ~~~~--~~~~~~ 462 (507)
..++ +.+..+
T Consensus 332 ~~t~~l~~~~~i 343 (361)
T 2oiz_A 332 ISQPEPKLLRTI 343 (361)
T ss_dssp CSSSSCEEEEEE
T ss_pred CCCCcceeeEEe
Confidence 9998 666554
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=6e-17 Score=151.75 Aligned_cols=239 Identities=11% Similarity=0.066 Sum_probs=162.4
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECC-CCceeEEEecCCCCCCceEEEEEccCCCe--EEEEeC-------------C
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTK-TNKTQLLVEYPTYDNAYISCVAWKPRTTD--LAVTNT-------------C 229 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~-------------~ 229 (507)
+..++|+|++ +++++.+ .|.+|++. +++......... + +.+.+++|+|+|++ ++++ . .
T Consensus 42 ~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~-~-g~~~~~~~spdg~~l~~~~~-~~~~~~~~~~~~~~~ 117 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI-G-GHPRANDADTNTRAIFLLAA-KQPPYAVYANPFYKF 117 (365)
T ss_dssp CSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC-C-SSGGGGCTTSCCEEEEEEEC-SSTTCCEEEEEESSS
T ss_pred CcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec-C-CCCccEEECCCCCEEEEEEe-cCCcceeccceeecC
Confidence 4468999998 4445555 99999997 777654444321 1 23556899999985 3444 3 6
Q ss_pred CCcEEEEeCC-CceeEEEEee----cCccEEEEEe--eCCEEEEEec-CCeEEEEECC-CCCcC-ceeee--cCCCceEE
Q psy8285 230 TEYIDLWHEQ-EERLIQKLRT----HMHQVIAMCW--NGNLLSCGTI-GGNILHYDVR-THSDY-PTAIT--REGDVVCG 297 (507)
Q Consensus 230 dg~i~iwd~~-~~~~~~~~~~----~~~~v~~~~~--~~~~l~~~~~-dg~i~i~d~~-~~~~~-~~~~~--~~~~~v~~ 297 (507)
+|.+.+|++. +++....+.. +...+.+++| ++++++++.. ++.|++|++. +++.. ...+. .+...+..
T Consensus 118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence 8999999997 4655444432 4567889999 6888877664 6799999998 55421 11222 23567899
Q ss_pred EEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCC------eeeec----CCCC------CeeEEE-EccCCCcEEEEEccC
Q psy8285 298 LKWSPNGRYLASGS--NNTVKIWDFRQLDAKRP------QVNNQ----CHLS------AVKAIA-WCPWEPTLLATGGGI 358 (507)
Q Consensus 298 ~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~------~~~~~----~~~~------~v~~~~-~~~~~~~~~~~~~~~ 358 (507)
++|+|||+++++++ ++.|.+|++..... +. +..+. +|.. .+..++ |+|||+.++++..+
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~- 275 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPATH-MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA- 275 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTC-CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE-
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCCC-cEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC-
Confidence 99999999998877 38999998763210 21 11221 1122 588999 99999877766542
Q ss_pred CCC-----eEEEEeCC-CCCeeee---eec-CCCeEEEEECC---CCCeEEEEeccCCCeEEEEeCCCc
Q psy8285 359 CDQ-----TVRLWNSM-NGKEKCH---VKT-DSQVTSILWSE---QYRELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 359 ~d~-----~i~i~d~~-~~~~~~~---~~~-~~~i~~~~~s~---~~~~l~~~~g~~d~~i~v~d~~~~ 414 (507)
+. .|.+|++. +++.... ... ...+..++|+| +|++|+++ ...++.|.+|++...
T Consensus 276 -~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~-~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 276 -NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT-DDQEGWLEIYRWKDE 342 (365)
T ss_dssp -SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE-CSSSCEEEEEEEETT
T ss_pred -CCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEE-EcCCCeEEEEEEchh
Confidence 33 89999986 5664432 322 24567789999 89999984 344589999998665
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-16 Score=145.06 Aligned_cols=262 Identities=12% Similarity=0.067 Sum_probs=180.6
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
+.++.|+++. ++..+.++.++.|. ++... .+.. +...+.+++|+|+++.+++. ..++.|.+||..+++...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~-~~~~~~~~~~~~~g~l~~~~-~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTIT---AEPWL--EISK-KGLQLEGLNFDRQGQLFLLD-VFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEE--EEES-SCCCEEEEEECTTSCEEEEE-TTTCEEEEECTTTCCEEE
T ss_pred cceeeecCCccceeEEeecccCcccc---cceeE--EEec-cCccccCcEECCCCCEEEEE-CCCCEEEEEeCCCCcEEE
Confidence 4567777765 44446777888882 23222 2222 55678999999999866666 788999999998887665
Q ss_pred EEeecCccEEEEEe--eCCEEEEEecC----CeEEEEECCCCCcCceeee--cCCCceEEEEEcCCCCEEEEEeC-----
Q psy8285 246 KLRTHMHQVIAMCW--NGNLLSCGTIG----GNILHYDVRTHSDYPTAIT--REGDVVCGLKWSPNGRYLASGSN----- 312 (507)
Q Consensus 246 ~~~~~~~~v~~~~~--~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~d----- 312 (507)
....+...+.++++ +++++++...+ +.|.+||..+.. ....+. .....+.+++++|+|+++++...
T Consensus 81 ~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~ 159 (333)
T 2dg1_A 81 PFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN-LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTN 159 (333)
T ss_dssp EEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS-CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTB
T ss_pred EeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCE-EEEEEccCccCCcccceEECCCCCEEEEeccccccC
Confidence 55456678999999 57777776655 689999988765 221222 23457899999999998877652
Q ss_pred --CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC-CCeeeee--------ecCC
Q psy8285 313 --NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-GKEKCHV--------KTDS 381 (507)
Q Consensus 313 --~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~--------~~~~ 381 (507)
+.|..+|...+ .+..+......+..++|+|+++.++++... ++.|.+||+.+ ++....+ ....
T Consensus 160 ~~~~l~~~~~~~~----~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~--~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~ 233 (333)
T 2dg1_A 160 PLGGVYYVSPDFR----TVTPIIQNISVANGIALSTDEKVLWVTETT--ANRLHRIALEDDGVTIQPFGATIPYYFTGHE 233 (333)
T ss_dssp CCEEEEEECTTSC----CEEEEEEEESSEEEEEECTTSSEEEEEEGG--GTEEEEEEECTTSSSEEEEEEEEEEECCSSS
T ss_pred CCceEEEEeCCCC----EEEEeecCCCcccceEECCCCCEEEEEeCC--CCeEEEEEecCCCcCcccccceEEEecCCCC
Confidence 34555555433 233332334457899999999777776654 78999999864 3332211 1123
Q ss_pred CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecccc------ceeEEEECCCCCEEEEEeCCC
Q psy8285 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQE------RILSAVLSPDQTCVAAASADE 446 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~------~i~~~~~s~~~~~l~s~~~dg 446 (507)
.+..++++++|+.+++ ...++.|.+||. +++.+..+..+.. .+.+++|+||++.|+.++.++
T Consensus 234 ~~~~i~~d~~G~l~v~--~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 234 GPDSCCIDSDDNLYVA--MYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEEEEEBTTCCEEEE--EETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCCceEECCCCCEEEE--EcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 6788999999997777 455789999998 5666666654433 689999999987776665553
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=8.2e-17 Score=163.61 Aligned_cols=281 Identities=9% Similarity=-0.021 Sum_probs=186.5
Q ss_pred cceeeeeeCCCCEEEEE----cCCeEEEEECCCCceeEEEecCCCCCCceE---------EEEEc--cCCCe-EEEEeCC
Q psy8285 166 FYTSGLDWGYHDTLAVA----LDTSVYTWNTKTNKTQLLVEYPTYDNAYIS---------CVAWK--PRTTD-LAVTNTC 229 (507)
Q Consensus 166 ~~i~~~~~s~~~~~~~~----~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~---------~~~~~--~~~~~-l~~~~~~ 229 (507)
..+..+++++++++.+. .++...||....+..... +.. +...+. ...|+ |||+. |+.+...
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--l~~-~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEES--ALP-APWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEE--SSC-TTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcce--eCC-CCccccccccccCCccceeeeecCCCeEEEEEECC
Confidence 35778999998844443 367889998543332222 222 444555 56665 99998 8877344
Q ss_pred CCcEEEEeCC--CceeEEEEee-----cCccEEEEEe--eCCEEEEEecC----------CeEEEEECCC------CCcC
Q psy8285 230 TEYIDLWHEQ--EERLIQKLRT-----HMHQVIAMCW--NGNLLSCGTIG----------GNILHYDVRT------HSDY 284 (507)
Q Consensus 230 dg~i~iwd~~--~~~~~~~~~~-----~~~~v~~~~~--~~~~l~~~~~d----------g~i~i~d~~~------~~~~ 284 (507)
+..|.++++. .......+.. |...+..++| |++.|++++.+ ..|++||+.+ +.
T Consensus 101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-- 178 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-- 178 (662)
T ss_dssp TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG--
T ss_pred CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc--
Confidence 6677777775 2033444554 5667888888 78999988876 5899999987 33
Q ss_pred ceeee-cCCCceEEEEEcCCCCEEEEEe-CC--------cEEEEEcCC-CCCCCCeeeecCCCCCeeEEEEccCCCcEEE
Q psy8285 285 PTAIT-REGDVVCGLKWSPNGRYLASGS-NN--------TVKIWDFRQ-LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLA 353 (507)
Q Consensus 285 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~-d~--------~i~i~d~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 353 (507)
...+. .+...+..++|+|||++|+.++ ++ .|++||+.. +...........+...+..+.|+|||+ +++
T Consensus 179 ~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~ 257 (662)
T 3azo_A 179 VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIV 257 (662)
T ss_dssp SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEE
T ss_pred eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEE
Confidence 34455 5566788899999999998776 43 799999983 311012222333567899999999997 666
Q ss_pred EEccCCCC--eEEEEeCCCCCeeeeeecCCC---------eEEEEECCCCCeEEEEeccCCCeEEEE--eCCCccEEEEe
Q psy8285 354 TGGGICDQ--TVRLWNSMNGKEKCHVKTDSQ---------VTSILWSEQYRELVTSHGKQDCSLKMW--EYPRLHLIEEL 420 (507)
Q Consensus 354 ~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~---------i~~~~~s~~~~~l~~~~g~~d~~i~v~--d~~~~~~~~~~ 420 (507)
++.. ++ .|.+||+.+++.......+.. +..++|+|+++.+++ +.. +.++|| |..+++ +..+
T Consensus 258 ~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~--~~~-~~~~l~~~d~~~~~-~~~l 331 (662)
T 3azo_A 258 ATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV--HGK-GAAVLGILDPESGE-LVDA 331 (662)
T ss_dssp EECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE--EBS-SSCEEEEEETTTTE-EEEC
T ss_pred EECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE--EEc-CccEEEEEECCCCc-EEEe
Confidence 6654 66 788888777765554443321 467889999998888 566 888888 655554 6777
Q ss_pred eccccceeEE-EECCCCCEEEEEeCCCc--EEEEecCCCCc
Q psy8285 421 KIHQERILSA-VLSPDQTCVAAASADET--ISIWNCFPRDK 458 (507)
Q Consensus 421 ~~~~~~i~~~-~~s~~~~~l~s~~~dg~--i~iw~~~~~~~ 458 (507)
..|...+..+ +++.+.-.+++++.+.. |.+|++.+++.
T Consensus 332 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 332 AGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp CSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 7777777776 54433334445555544 55556656554
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-15 Score=140.61 Aligned_cols=239 Identities=8% Similarity=0.054 Sum_probs=164.9
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC---C--cEEEEeCCCceeEEEEeecCccEEEEE
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT---E--YIDLWHEQEERLIQKLRTHMHQVIAMC 258 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d---g--~i~iwd~~~~~~~~~~~~~~~~v~~~~ 258 (507)
++.|++|++.+++...+ ..+..++|+|+|++|+.+ +.+ + .|.+||+.+++.......+ . +..+.
T Consensus 42 ~~~l~~~d~~~~~~~~l--------~~~~~~~~SpDg~~la~~-~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~ 110 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI--------ENATMPRISPDGKKIAFM-RANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLE 110 (347)
T ss_dssp EEEEEEEETTTCCEEEE--------ESCEEEEECTTSSEEEEE-EEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEE
T ss_pred cceEEEEeCCCCceEEc--------ccCCCeEECCCCCEEEEE-EeccCCCcceEEEEECCCCceEEEEcCC-C-cccee
Confidence 56899999998876544 247889999999999987 432 3 4888898887766554433 3 88899
Q ss_pred e--eCCEEEEEecC---------------------------CeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEE
Q psy8285 259 W--NGNLLSCGTIG---------------------------GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 259 ~--~~~~l~~~~~d---------------------------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 309 (507)
| +++.|+.++.+ ..|++||+.+++ ....+.. . .+..+.|+||| ++++
T Consensus 111 wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~-~~~~l~~-~-~~~~~~~spdg-~~~~ 186 (347)
T 2gop_A 111 WNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEE-VIEEFEK-P-RFSSGIWHRDK-IVVN 186 (347)
T ss_dssp ECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTE-EEEEEEE-E-TTCEEEEETTE-EEEE
T ss_pred ECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCe-EEeeecC-C-CcccccCCCCe-EEEE
Confidence 9 78888887642 568999998765 2133333 3 77889999999 7776
Q ss_pred Ee-CC-------cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccC-----CCCeEEEEeCCCCCeeee
Q psy8285 310 GS-NN-------TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGI-----CDQTVRLWNSMNGKEKCH 376 (507)
Q Consensus 310 ~~-d~-------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~ 376 (507)
+. +. ...+|.+.++ ....+..+ ..+..+ +|+|+.+++.+... ....|.+|| +++....
T Consensus 187 ~~~~~~~~~~~~~~~l~~~d~~----~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l 257 (347)
T 2gop_A 187 VPHREIIPQYFKFWDIYIWEDG----KEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI 257 (347)
T ss_dssp EECCCSSCCSSCCEEEEEEETT----EEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES
T ss_pred EecccccccccccccEEEeCCC----ceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEec
Confidence 65 22 4455555432 33344334 445444 99998887766421 124788888 5555444
Q ss_pred eecC-CCeEE-EEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcE-EEEec
Q psy8285 377 VKTD-SQVTS-ILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETI-SIWNC 453 (507)
Q Consensus 377 ~~~~-~~i~~-~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i-~iw~~ 453 (507)
...+ ..+.. +.|+ ++ .+++ +..++.+++| +.+++.. .+..+...|.+++|+| ..+++++.++.. .+|.+
T Consensus 258 ~~~~~~~~~~~~~~s-dg-~~~~--~~~~~~~~l~-~~~g~~~-~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 258 LDEVDRGVGQAKIKD-GK-VYFT--LFEEGSVNLY-IWDGEIK-PIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTW 329 (347)
T ss_dssp STTCCSEEEEEEEET-TE-EEEE--EEETTEEEEE-EESSSEE-EEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEE
T ss_pred cccCCcccCCccEEc-Cc-EEEE--EecCCcEEEE-EcCCceE-EEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEe
Confidence 4443 46775 8999 88 6666 6788999999 8766554 3444577899999999 677777777665 77777
Q ss_pred C
Q psy8285 454 F 454 (507)
Q Consensus 454 ~ 454 (507)
.
T Consensus 330 ~ 330 (347)
T 2gop_A 330 D 330 (347)
T ss_dssp S
T ss_pred C
Confidence 6
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-17 Score=154.48 Aligned_cols=260 Identities=10% Similarity=0.006 Sum_probs=168.4
Q ss_pred EEECCCCceeEEEecCC--CCCCceEEEEEccCCCeEEEEeCCCC--cEEEEeCCCceeEEEEeecCccEEEEEe--eCC
Q psy8285 189 TWNTKTNKTQLLVEYPT--YDNAYISCVAWKPRTTDLAVTNTCTE--YIDLWHEQEERLIQKLRTHMHQVIAMCW--NGN 262 (507)
Q Consensus 189 iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~ 262 (507)
..|..+++....+.... .+...+..++|+|+|++|+.+...++ .|.+||+.+++.......+......+.| +++
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER 93 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence 44666666544333210 01122677899999999887733333 6888899888765443333222222555 799
Q ss_pred EEEEEecCCeEEEEECCCCCcCceeeecCCCceEE-------------------EEEcCCCCEEEEE-----e-CCcEEE
Q psy8285 263 LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCG-------------------LKWSPNGRYLASG-----S-NNTVKI 317 (507)
Q Consensus 263 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~-d~~i~i 317 (507)
.|+..+.++.|++||+.+++ .......+...... +.|+|+++.++.. . +..|++
T Consensus 94 ~l~~~~~~~~l~~~d~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETLE-EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp EEEEEETTTEEEEEETTTCC-EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred EEEEEEcCCcEEEEECCCCC-cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence 99999999999999998765 23333323332222 3467777766553 2 378999
Q ss_pred EEcCCCCCCCCeeeecCCCCCeeEEEEcc-CCCcEEEEEccCCC----CeEEEEeCCCCCeeeeeecC--CCeEEEEECC
Q psy8285 318 WDFRQLDAKRPQVNNQCHLSAVKAIAWCP-WEPTLLATGGGICD----QTVRLWNSMNGKEKCHVKTD--SQVTSILWSE 390 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~~~~~--~~i~~~~~s~ 390 (507)
||+.++ +. ..+..+...+..+.|+| ++..++++..+ .. ..|.+||+..++........ ..+..++|+|
T Consensus 173 ~d~~~g---~~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~-~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~sp 247 (396)
T 3c5m_A 173 VDIETG---EL-EVIHQDTAWLGHPIYRPFDDSTVGFCHEG-PHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIP 247 (396)
T ss_dssp EETTTC---CE-EEEEEESSCEEEEEEETTEEEEEEEEECS-CSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECT
T ss_pred EECCCC---cE-EeeccCCcccccceECCCCCCEEEEEecC-CCCCCCceEEEEECCCCceeEeeccCCCccccceEECC
Confidence 999876 33 33334667889999999 77666665532 12 57999998766544333322 2478899999
Q ss_pred CCCeEEEEeccCC-----CeEEEEeCCCccEEEEeeccccceeEEEECC-CCCEEEEEe----------------CCCcE
Q psy8285 391 QYRELVTSHGKQD-----CSLKMWEYPRLHLIEELKIHQERILSAVLSP-DQTCVAAAS----------------ADETI 448 (507)
Q Consensus 391 ~~~~l~~~~g~~d-----~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~s~~----------------~dg~i 448 (507)
+|++|+.. +.+ +.|++||+.+++...... ... .. +.|+| ||+++++++ .+..|
T Consensus 248 dg~~l~~~--~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i 322 (396)
T 3c5m_A 248 DGSAMAYV--SYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFL 322 (396)
T ss_dssp TSSCEEEE--EEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEE
T ss_pred CCCEEEEE--ecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcE
Confidence 99988874 222 459999998876543322 112 23 89999 999888765 34789
Q ss_pred EEEecCCCCcc
Q psy8285 449 SIWNCFPRDKK 459 (507)
Q Consensus 449 ~iw~~~~~~~~ 459 (507)
++||+.+++..
T Consensus 323 ~~~d~~~~~~~ 333 (396)
T 3c5m_A 323 YVLNTKAKSAQ 333 (396)
T ss_dssp EEEETTTTBCC
T ss_pred EEEecccCceE
Confidence 99999877653
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4e-15 Score=152.07 Aligned_cols=266 Identities=9% Similarity=0.035 Sum_probs=183.7
Q ss_pred eEEEEECCCCceeEEEec---CCCCCCceEEEEEccCCCeEEEEeCCCC----cEEEEeCCCceeEEEEeecCccEEEEE
Q psy8285 186 SVYTWNTKTNKTQLLVEY---PTYDNAYISCVAWKPRTTDLAVTNTCTE----YIDLWHEQEERLIQKLRTHMHQVIAMC 258 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~ 258 (507)
.+++.+..+++...++.. ...+...+..++|||||++|+.+.+.+| .|++||+.+++.......+ ..+..++
T Consensus 99 ~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~ 177 (710)
T 2xdw_A 99 VLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMA 177 (710)
T ss_dssp EEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEE
T ss_pred EEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEE
Confidence 455655555554444332 1113346889999999999998733333 8999999999877643322 2256688
Q ss_pred e--eCCEEEEEecCCe----------------EEEEECCCCCcCcee-eec--CCCceEEEEEcCCCCEEEEEe------
Q psy8285 259 W--NGNLLSCGTIGGN----------------ILHYDVRTHSDYPTA-ITR--EGDVVCGLKWSPNGRYLASGS------ 311 (507)
Q Consensus 259 ~--~~~~l~~~~~dg~----------------i~i~d~~~~~~~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~------ 311 (507)
| |++.|+.++.++. |++|++.++...... ... +...+..+.|+|||++|+..+
T Consensus 178 wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~ 257 (710)
T 2xdw_A 178 WTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDP 257 (710)
T ss_dssp ECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSS
T ss_pred EEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCC
Confidence 8 7889999887765 999999876522122 222 345578899999999988765
Q ss_pred CCcEEEEEcCC------CCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccC-CCCeEEEEeCCCCCe--eeeeecC-C
Q psy8285 312 NNTVKIWDFRQ------LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGI-CDQTVRLWNSMNGKE--KCHVKTD-S 381 (507)
Q Consensus 312 d~~i~i~d~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~--~~~~~~~-~ 381 (507)
+..|++||+.+ +. .....+..+...+.. .|+|+|..+++.+... ....|.+||+.+++. ...+..+ .
T Consensus 258 ~~~l~~~d~~~~~~~~~~~--~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~ 334 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGI--LKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE 334 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSS--CCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred ccEEEEEECcccccccCCc--cceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC
Confidence 25799999976 31 134555556655554 5889998887776521 135799999988752 2333333 2
Q ss_pred --CeEEEEECCCCCeEEEEeccCCC--eEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEE-e---CCCcEEEEec
Q psy8285 382 --QVTSILWSEQYRELVTSHGKQDC--SLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAA-S---ADETISIWNC 453 (507)
Q Consensus 382 --~i~~~~~s~~~~~l~~~~g~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~---~dg~i~iw~~ 453 (507)
.+..++|++++..+++ ...++ .|++|++.+++.+..+..+.+.+..+.++|++..++.. + ..+.|+.||+
T Consensus 335 ~~~~~~~~~~~~~~lv~~--~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 335 KDVLEWVACVRSNFLVLC--YLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp SCEEEEEEEETTTEEEEE--EEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEET
T ss_pred CCeEEEEEEEcCCEEEEE--EEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEEC
Confidence 5778999977766666 56676 46777887788778888777889999999998766533 2 3578999999
Q ss_pred CCCC
Q psy8285 454 FPRD 457 (507)
Q Consensus 454 ~~~~ 457 (507)
.+++
T Consensus 413 ~tg~ 416 (710)
T 2xdw_A 413 TKEE 416 (710)
T ss_dssp TSSS
T ss_pred CCCc
Confidence 8876
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-16 Score=157.66 Aligned_cols=269 Identities=10% Similarity=0.030 Sum_probs=164.5
Q ss_pred CCC-E-EEEEc--CCeEEEEECC--C-CceeEEEecCC-CCCCceEEEEEccCCCeEEEEeCCC----------CcEEEE
Q psy8285 175 YHD-T-LAVAL--DTSVYTWNTK--T-NKTQLLVEYPT-YDNAYISCVAWKPRTTDLAVTNTCT----------EYIDLW 236 (507)
Q Consensus 175 ~~~-~-~~~~~--~~~i~iw~~~--~-~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~d----------g~i~iw 236 (507)
||+ . ++.+. +..|+++++. + ++...+..... .+...+..++|+|||+.|+++ +.+ ..|++|
T Consensus 88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~-~~~~~~~~~~~~~~~i~~~ 166 (662)
T 3azo_A 88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCM-AEEFTGEGPSDVRRFLAAV 166 (662)
T ss_dssp SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEE-EEEECSSSTTCEEEEEEEE
T ss_pred cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEE-EecccCCCCCCceeEEEEE
Confidence 776 5 66664 4567777775 3 54433332110 034578899999999999988 555 589999
Q ss_pred eCCC------ceeEEEEe-ecCccEEEEEe--eCCEEEEEecCC--------eEEEEECC-CCC--cCceeeecCCCceE
Q psy8285 237 HEQE------ERLIQKLR-THMHQVIAMCW--NGNLLSCGTIGG--------NILHYDVR-THS--DYPTAITREGDVVC 296 (507)
Q Consensus 237 d~~~------~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg--------~i~i~d~~-~~~--~~~~~~~~~~~~v~ 296 (507)
|+.+ ++. ..+. .+...+..++| ||+.|+.++.++ .|++||+. ++. ........+...+.
T Consensus 167 ~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~ 245 (662)
T 3azo_A 167 PLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIA 245 (662)
T ss_dssp ETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEE
T ss_pred ECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEc
Confidence 9988 554 4444 55566777778 799998887553 79999998 441 23334445578899
Q ss_pred EEEEcCCCCEEEEEe-CC--cEEEEEcCCCCCCCCeeeecCCCCC---------eeEEEEccCCCcEEEEEccCCCCeEE
Q psy8285 297 GLKWSPNGRYLASGS-NN--TVKIWDFRQLDAKRPQVNNQCHLSA---------VKAIAWCPWEPTLLATGGGICDQTVR 364 (507)
Q Consensus 297 ~~~~~~~~~~l~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~~~~~~~~~~~d~~i~ 364 (507)
.+.|+|||++++++. ++ .|++||+.++ +. ..+..+... +..++|+|++ .+++++. . +.++
T Consensus 246 ~~~~spdg~l~~~~~~~~~~~l~~~~~~~~---~~-~~l~~~~~~~~~p~w~~~~~~~~~~~~~-~~~~~~~--~-~~~~ 317 (662)
T 3azo_A 246 QAEWAPDGSLIVATDRTGWWNLHRVDPATG---AA-TQLCRREEEFAGPLWTPGMRWFAPLANG-LIAVVHG--K-GAAV 317 (662)
T ss_dssp EEEECTTSCEEEEECTTSSCEEEEECTTTC---CE-EESSCCSSBSSCCCCSTTCCSEEECTTS-CEEEEEB--S-SSCE
T ss_pred ceEECCCCeEEEEECCCCCeEEEEEECCCC---ce-eecccccccccCccccccCceEeEeCCC-EEEEEEE--c-CccE
Confidence 999999999766666 46 6666666554 22 222222211 4578888887 5666665 2 6667
Q ss_pred EE--eCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCC--eEEEEeCCCccEEEEeeccccceeEEEECCCCCEE
Q psy8285 365 LW--NSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDC--SLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCV 439 (507)
Q Consensus 365 i~--d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~--~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l 439 (507)
+| |+.+++ +..+..+ ..+..+ ++++++.++..+++.+. .|.++|+.+++.......+...+....+.+.....
T Consensus 318 l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 395 (662)
T 3azo_A 318 LGILDPESGE-LVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRT 395 (662)
T ss_dssp EEEEETTTTE-EEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEE
T ss_pred EEEEECCCCc-EEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccCCccccCcceEEE
Confidence 77 666555 4555544 445555 25556555543344443 56667777776544434444334333444443334
Q ss_pred EEEeCCCcEEEEecCC
Q psy8285 440 AAASADETISIWNCFP 455 (507)
Q Consensus 440 ~s~~~dg~i~iw~~~~ 455 (507)
+.+..+..|..|-+.+
T Consensus 396 ~~~~dg~~i~~~~~~P 411 (662)
T 3azo_A 396 FTAPDGREIHAHIYPP 411 (662)
T ss_dssp EECTTSCEEEEEEECC
T ss_pred EEcCCCCEEEEEEECC
Confidence 4443344676666544
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-14 Score=132.83 Aligned_cols=248 Identities=11% Similarity=0.051 Sum_probs=169.0
Q ss_pred cCCeEEEEECCCCceeEEEecCCC----CCCceEEEEEccCCCeEEEEeCC-CCcEEEEeCCCceeEEEEeecCccEEEE
Q psy8285 183 LDTSVYTWNTKTNKTQLLVEYPTY----DNAYISCVAWKPRTTDLAVTNTC-TEYIDLWHEQEERLIQKLRTHMHQVIAM 257 (507)
Q Consensus 183 ~~~~i~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 257 (507)
.++.|.+||..+++....+..... .......++|+|||+++++++.. ++.|.++|+.+++.+.++.... . ..+
T Consensus 107 ~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-~-~~~ 184 (386)
T 3sjl_D 107 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-C-YHI 184 (386)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-E-EEE
T ss_pred CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-c-cee
Confidence 356899999999998777665320 01245679999999999988322 6899999999999998886422 1 122
Q ss_pred Ee-eCCEEEEEecCCeEEEEECCCCCcCceeeecC----CCceE-EEEEc-CCCCEEEEEeCCcEEEEEcCCCCCCCCee
Q psy8285 258 CW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITRE----GDVVC-GLKWS-PNGRYLASGSNNTVKIWDFRQLDAKRPQV 330 (507)
Q Consensus 258 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~v~-~~~~~-~~~~~l~~~~d~~i~i~d~~~~~~~~~~~ 330 (507)
.. ..+.+++.+.||.+.+.++............+ ...+. ...|. ++|++++...++.|++.|+..... +...
T Consensus 185 ~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~-~v~~ 263 (386)
T 3sjl_D 185 FPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLP 263 (386)
T ss_dssp EEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECC
T ss_pred ecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc-eeec
Confidence 22 56778888889999999987632221111111 12221 23554 678766655569999999976411 1111
Q ss_pred eec----------CCCCCeeEEEEccCCCcEEEEEcc-------CCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCC
Q psy8285 331 NNQ----------CHLSAVKAIAWCPWEPTLLATGGG-------ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYR 393 (507)
Q Consensus 331 ~~~----------~~~~~v~~~~~~~~~~~~~~~~~~-------~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~ 393 (507)
.+. -..+....++++|++++++++... ....+|.++|+.+++.+..+.....+.++++++|++
T Consensus 264 ~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~ 343 (386)
T 3sjl_D 264 AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEK 343 (386)
T ss_dssp CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSS
T ss_pred ceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCC
Confidence 111 012344567889999888886531 012579999999999999998887889999999997
Q ss_pred -eEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCC
Q psy8285 394 -ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPD 435 (507)
Q Consensus 394 -~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~ 435 (507)
+|+++ ...++.|.++|..+++.+.++... +.-+.+.+++|
T Consensus 344 ~~ly~t-n~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 344 PLLYAL-STGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp CEEEEE-ETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred eEEEEE-cCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 66664 456899999999999999988743 23345566665
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-14 Score=132.82 Aligned_cols=275 Identities=5% Similarity=-0.074 Sum_probs=185.6
Q ss_pred CCeEEEEECCCCceeEEEecC--C-CCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe-
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYP--T-YDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW- 259 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~--~-~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~- 259 (507)
++.|.++|.++++........ + ........+.+. +..+.++...++.|.+||..+++.+..+. .......+++
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 689999999998865433110 0 022346778774 34444443678999999999999988885 3456777888
Q ss_pred eCCEEEEEe-cCCeEEEEECCCCCcCceeeecCC-----CceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCeee
Q psy8285 260 NGNLLSCGT-IGGNILHYDVRTHSDYPTAITREG-----DVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQVN 331 (507)
Q Consensus 260 ~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~ 331 (507)
.+..+.++. .++.|.+||..+.+ ....+.... .....+++ .+++++++.. ++.|.++|+.++ +....
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~-~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~---~~~~~ 167 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYE-ITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD---KVVDE 167 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTE-EEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT---EEEEE
T ss_pred CCCeEEEEECCCCeEEEEECCCCe-EEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC---eEEEE
Confidence 333555555 78999999998875 232333222 14456777 3444444442 589999999987 55555
Q ss_pred ecCCCCCeeEEEEccCCCcEEEEEccCC--------CCeEEEEeCCCCCeeeeeecC--CCeEEEEECCCCCeEEEEecc
Q psy8285 332 NQCHLSAVKAIAWCPWEPTLLATGGGIC--------DQTVRLWNSMNGKEKCHVKTD--SQVTSILWSEQYRELVTSHGK 401 (507)
Q Consensus 332 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------d~~i~i~d~~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~g~ 401 (507)
+.. ......+.++|+|+ +++++.+.. .+.|.++|..+++....+... .....++++|+++.|+++ .
T Consensus 168 i~~-g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~--~ 243 (328)
T 3dsm_A 168 LTI-GIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI--N 243 (328)
T ss_dssp EEC-SSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE--S
T ss_pred EEc-CCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE--c
Confidence 543 33457899999985 655554310 178999999999887776653 468999999999999884 2
Q ss_pred CCCeEEEEeCCCccEEEE--eeccccceeEEEECCC-CCEEEEE----eCCCcEEEEecCCCCcccceeecCCCcceEE
Q psy8285 402 QDCSLKMWEYPRLHLIEE--LKIHQERILSAVLSPD-QTCVAAA----SADETISIWNCFPRDKKRKARQVGSGSSLEF 473 (507)
Q Consensus 402 ~d~~i~v~d~~~~~~~~~--~~~~~~~i~~~~~s~~-~~~l~s~----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 473 (507)
+.|.+||..+++.... +..+......++++|+ +..+++. ..++.|.+|+.. ++.+..+........+.+
T Consensus 244 --~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~ 319 (328)
T 3dsm_A 244 --NDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCW 319 (328)
T ss_dssp --SSEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEE
T ss_pred --cEEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEE
Confidence 2899999988775321 1212356789999994 5555555 568899999998 777766654433333333
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-13 Score=134.72 Aligned_cols=265 Identities=7% Similarity=0.016 Sum_probs=190.7
Q ss_pred EEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCC--CceeEEEEeecCccEEEEE
Q psy8285 181 VALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQ--EERLIQKLRTHMHQVIAMC 258 (507)
Q Consensus 181 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~ 258 (507)
...++.|.++|..+++....+.. ...+..+.|+|+|++++++ +.++.|.+||+. +++.+..+..... ...+.
T Consensus 173 ~~~~~~V~viD~~t~~v~~~i~~----g~~p~~v~~SpDGr~lyv~-~~dg~V~viD~~~~t~~~v~~i~~G~~-P~~ia 246 (567)
T 1qks_A 173 LRDAGQIALIDGSTYEIKTVLDT----GYAVHISRLSASGRYLFVI-GRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIE 246 (567)
T ss_dssp ETTTTEEEEEETTTCCEEEEEEC----SSCEEEEEECTTSCEEEEE-ETTSEEEEEETTSSSCCEEEEEECCSE-EEEEE
T ss_pred eCCCCeEEEEECCCCeEEEEEeC----CCCccceEECCCCCEEEEE-cCCCeEEEEECCCCCCcEeEEEecCCC-CceeE
Confidence 34789999999999988776653 3457799999999999998 789999999996 7788777765433 34555
Q ss_pred e------eCCEEEEEec-CCeEEEEECCCCCcCceeeec----------C-CCceEEEEEcCCCCEEEEEe-C-CcEEEE
Q psy8285 259 W------NGNLLSCGTI-GGNILHYDVRTHSDYPTAITR----------E-GDVVCGLKWSPNGRYLASGS-N-NTVKIW 318 (507)
Q Consensus 259 ~------~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~----------~-~~~v~~~~~~~~~~~l~~~~-d-~~i~i~ 318 (507)
| |+++++++.. ++.|.++|..+.+ ....+.. | ...+..+..++++..++... + |.|.++
T Consensus 247 ~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~-~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~v 325 (567)
T 1qks_A 247 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLV 325 (567)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEE
T ss_pred EccccCCCCCEEEEEEccCCeEEEEECCCCc-EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEE
Confidence 5 4777776654 5899999988866 3332221 1 12577888999877766655 5 999999
Q ss_pred EcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec-CC---CeEEEE-ECCCCC
Q psy8285 319 DFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT-DS---QVTSIL-WSEQYR 393 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~---~i~~~~-~s~~~~ 393 (507)
|....... .+..+ ........+.|+|++++++++... ++.|.++|+.+++.+..+.. .. +-.... ++|++.
T Consensus 326 d~~~~~~~-~v~~i-~~~~~~~d~~~~pdgr~~~va~~~--sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g 401 (567)
T 1qks_A 326 DYTDLNNL-KTTEI-SAERFLHDGGLDGSHRYFITAANA--RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG 401 (567)
T ss_dssp ETTCSSEE-EEEEE-ECCSSEEEEEECTTSCEEEEEEGG--GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE
T ss_pred ecCCCccc-eeeee-eccccccCceECCCCCEEEEEeCC--CCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCC
Confidence 98764211 12222 234456788999999988888765 89999999999988777665 21 111222 588866
Q ss_pred eEEEEeccCCCeEEEEeCCC-------ccEEEEeeccccceeEEEECCCCCEEEEEeC-------CCcEEEEecCCC
Q psy8285 394 ELVTSHGKQDCSLKMWEYPR-------LHLIEELKIHQERILSAVLSPDQTCVAAASA-------DETISIWNCFPR 456 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-------dg~i~iw~~~~~ 456 (507)
.+.++....++.|.++|..+ .+.+.++......-..+..+|++++|.+... ..+|.++|+.+.
T Consensus 402 ~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 402 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 66543233568999999987 6778888765444355788999999987663 359999999877
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-13 Score=122.55 Aligned_cols=269 Identities=10% Similarity=-0.001 Sum_probs=184.8
Q ss_pred ceeeeeeCCCC-EEEEEc-CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 167 YTSGLDWGYHD-TLAVAL-DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~-~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.+.++++.+++ ++.+.. ++.|.+|+.. ++... ...+. ....+.++++.+++..+++. ..++.|..||.. ++.
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~~~-~~~~~~~i~~~~~g~l~v~~-~~~~~i~~~~~~-g~~- 89 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINLD-GKITE-YPLPT-PDAKVMCLTISSDGEVWFTE-NAANKIGRITKK-GII- 89 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EECSS-TTCCEEEEEECTTSCEEEEE-TTTTEEEEECTT-SCE-
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecCCc-ccCceeeEEECCCCCEEEeC-CCCCeEEEECCC-CcE-
Confidence 46678888987 555554 6899999988 65443 33332 45679999999999877776 668899999976 332
Q ss_pred EEEe--ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8285 245 QKLR--THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 245 ~~~~--~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d 319 (507)
..+. .....+..+.+ +++++++...++.|.+||. ++.............+..+++.++++++++.. ++.|..||
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 168 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRIT 168 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEc
Confidence 2222 24456788888 4667776667889999998 44322222223455789999999998877766 48999999
Q ss_pred cCCCCCCCCeee-ecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeee-ee-cCCCeEEEEECCCCCeEE
Q psy8285 320 FRQLDAKRPQVN-NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH-VK-TDSQVTSILWSEQYRELV 396 (507)
Q Consensus 320 ~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~-~~~~i~~~~~s~~~~~l~ 396 (507)
. ++ +.... .......+..+++++++. ++++... ++.|..||. +++.... .. ....+.+++++++|+.++
T Consensus 169 ~-~g---~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~--~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v 240 (299)
T 2z2n_A 169 E-SG---DITEFKIPTPASGPVGITKGNDDA-LWFVEII--GNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWF 240 (299)
T ss_dssp T-TC---CEEEEECSSTTCCEEEEEECTTSS-EEEEETT--TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred C-CC---cEEEeeCCCCCCcceeEEECCCCC-EEEEccC--CceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEE
Confidence 8 44 22221 233455688999999885 6655543 789999998 6664332 22 125789999999998666
Q ss_pred EEeccCCCeEEEEeCCCccEEEEe--eccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 397 TSHGKQDCSLKMWEYPRLHLIEEL--KIHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 397 ~~~g~~d~~i~v~d~~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
+ ...++.|..||. +++ +..+ ..+...+.++++ ++++++++.+ .+.+..++..+.
T Consensus 241 ~--~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 241 T--EWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp E--ETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred e--ccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 5 446789999998 443 2333 344567899999 8888776655 567777777654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-14 Score=130.25 Aligned_cols=239 Identities=11% Similarity=-0.003 Sum_probs=165.1
Q ss_pred ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCcee
Q psy8285 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTA 287 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 287 (507)
...+++++++++.++++...++.|.+||..+.........+...+.++++ +++++++.. ++.|.+||..... ...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~--~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN--QTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC--CEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce--Eee
Confidence 67899999999866524267889999997655432222223345677888 466555554 8899999987653 222
Q ss_pred ee-cCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEE
Q psy8285 288 IT-REGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRL 365 (507)
Q Consensus 288 ~~-~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i 365 (507)
+. .....+..++++++++++++.. ++.|.+|+..+. ............+..++++|++. ++++... ++.|.+
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~---~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~--~~~i~~ 175 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK---TQTVLPFTGLNDPDGVAVDNSGN-VYVTDTD--NNRVVK 175 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC---SCEECCCCSCCSCCCEEECTTCC-EEEEEGG--GTEEEE
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCc---eeEeeccccCCCceeEEEeCCCC-EEEEECC--CCEEEE
Confidence 22 2335688999999999777665 489999976543 22222222334678999999885 6666553 789999
Q ss_pred EeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeC
Q psy8285 366 WNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 366 ~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 444 (507)
||............. ..+..++++++|..+++ ...++.|.+|+............+...+.+++++++|+.+++...
T Consensus 176 ~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~--~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 176 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVT--EHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEE--ETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred EecCCCceEeecccCCCCceEEEECCCCCEEEE--ECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECC
Confidence 998876654433333 67899999999966666 556789999998765443332233456899999999998888888
Q ss_pred CCcEEEEecCCCCcc
Q psy8285 445 DETISIWNCFPRDKK 459 (507)
Q Consensus 445 dg~i~iw~~~~~~~~ 459 (507)
++.|+++++...+..
T Consensus 254 ~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 254 NDRVVKLTSLEHHHH 268 (270)
T ss_dssp GTEEEEECCCGGGSC
T ss_pred CCEEEEEcCCCcccc
Confidence 999999998876544
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-14 Score=130.48 Aligned_cols=231 Identities=10% Similarity=0.052 Sum_probs=165.1
Q ss_pred CCCceEEEEEccCCC-eEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc
Q psy8285 207 DNAYISCVAWKPRTT-DLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD 283 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~-~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~ 283 (507)
+.....+++|+|+++ .+++. ..++.|..||..++ ...+..+...+.++++ +++++++...++.|.+||..+++.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~-~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSD-VRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEE-GGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred CCccccCCeEeCCCCEEEEEe-CCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence 455678999999998 45555 88999999999887 5666667778899999 577777766678999999976652
Q ss_pred Cceeeec----CCCceEEEEEcCCCCEEEEE----e--------------CCcEEEEEcCCCCCCCCeeeecCCCCCeeE
Q psy8285 284 YPTAITR----EGDVVCGLKWSPNGRYLASG----S--------------NNTVKIWDFRQLDAKRPQVNNQCHLSAVKA 341 (507)
Q Consensus 284 ~~~~~~~----~~~~v~~~~~~~~~~~l~~~----~--------------d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 341 (507)
...... ....+..++++|+|+++++. . .+.|..++.. + .+..+..+......
T Consensus 103 -~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g----~~~~~~~~~~~~~g 176 (296)
T 3e5z_A 103 -ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G----TLSAPIRDRVKPNG 176 (296)
T ss_dssp -EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S----CEEEEECCCSSEEE
T ss_pred -EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C----CEEEeecCCCCCcc
Confidence 221111 12345679999999988873 2 1345555443 2 33444456667889
Q ss_pred EEEccCCCcEEEEEccCCCCeEEEEeCC-CCCe---eeeeec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE
Q psy8285 342 IAWCPWEPTLLATGGGICDQTVRLWNSM-NGKE---KCHVKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL 416 (507)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~---~~~~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~ 416 (507)
++|+|+++.+ ++... ++.|.+||+. +++. ...+.. ...+..++++++|+.+++ . ++.|.+||.. ++.
T Consensus 177 i~~s~dg~~l-v~~~~--~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~--~--~~~v~~~~~~-g~~ 248 (296)
T 3e5z_A 177 LAFLPSGNLL-VSDTG--DNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWAS--A--GDGVHVLTPD-GDE 248 (296)
T ss_dssp EEECTTSCEE-EEETT--TTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEE--E--TTEEEEECTT-SCE
T ss_pred EEECCCCCEE-EEeCC--CCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEE--c--CCeEEEECCC-CCE
Confidence 9999999766 66554 8899999987 4554 233311 245678999999986666 3 7889999976 778
Q ss_pred EEEeeccccceeEEEE-CCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 417 IEELKIHQERILSAVL-SPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 417 ~~~~~~~~~~i~~~~~-s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
+..+..+.. +.+++| +|+++.|++++.++ +.-++..+.
T Consensus 249 ~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 249 LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp EEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred EEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 888877777 899999 68999998888763 444444443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.6e-14 Score=128.01 Aligned_cols=232 Identities=9% Similarity=0.158 Sum_probs=162.1
Q ss_pred eeeeeeCCCC-EEEE-EcCCeEEEEECCCCceeEEEecCC---CCCCceEEEEEc-cCCCeEEEEeCC-CCcEEEEeCCC
Q psy8285 168 TSGLDWGYHD-TLAV-ALDTSVYTWNTKTNKTQLLVEYPT---YDNAYISCVAWK-PRTTDLAVTNTC-TEYIDLWHEQE 240 (507)
Q Consensus 168 i~~~~~s~~~-~~~~-~~~~~i~iw~~~~~~~~~~~~~~~---~~~~~v~~~~~~-~~~~~l~~~~~~-dg~i~iwd~~~ 240 (507)
...+++++++ ++++ ..++.|.+|+.. ++....+...+ .+...+..+++. +++..+++. .. ++.|.+|| .+
T Consensus 32 p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~-~~~~~~i~~~d-~~ 108 (286)
T 1q7f_A 32 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTE-RSPTHQIQIYN-QY 108 (286)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEE-CGGGCEEEEEC-TT
T ss_pred CceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEc-CCCCCEEEEEC-CC
Confidence 5578888887 4444 468899999987 54444333211 134578999995 666555544 33 88999999 56
Q ss_pred ceeEEEEee-cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeee--cCCCceEEEEEcCCCCEEEEEe-CCc
Q psy8285 241 ERLIQKLRT-HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAIT--REGDVVCGLKWSPNGRYLASGS-NNT 314 (507)
Q Consensus 241 ~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-d~~ 314 (507)
++.+..+.. +...+..+++ +++++++...++.|.+||.... ....+. .+...+..++++++++++++.. ++.
T Consensus 109 g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~--~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 109 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN--VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC 186 (286)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC--EEEEeCCCCccCCcEEEEECCCCCEEEEECCCCE
Confidence 676666643 3456788888 5777777777899999997542 233332 3445689999999999777766 599
Q ss_pred EEEEEcCCCCCCCCeeeecCC--CCCeeEEEEccCCCcEEEEEccCCCC-eEEEEeCCCCCeeeeeecC---CCeEEEEE
Q psy8285 315 VKIWDFRQLDAKRPQVNNQCH--LSAVKAIAWCPWEPTLLATGGGICDQ-TVRLWNSMNGKEKCHVKTD---SQVTSILW 388 (507)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~d~-~i~i~d~~~~~~~~~~~~~---~~i~~~~~ 388 (507)
|++||... ..+..+..+ ...+..++++|+| .++++... ++ .|.+||. +++.+..+..+ ..+..+++
T Consensus 187 i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 187 VKVFNYEG----QYLRQIGGEGITNYPIGVGINSNG-EILIADNH--NNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL 258 (286)
T ss_dssp EEEEETTC----CEEEEESCTTTSCSEEEEEECTTC-CEEEEECS--SSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred EEEEcCCC----CEEEEEccCCccCCCcEEEECCCC-CEEEEeCC--CCEEEEEECC-CCCEEEEEcccCCCCcceeEEE
Confidence 99999753 344444333 3678999999998 56666543 65 9999995 56666666544 24789999
Q ss_pred CCCCCeEEEEeccCCCeEEEEeCCCcc
Q psy8285 389 SEQYRELVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 389 s~~~~~l~~~~g~~d~~i~v~d~~~~~ 415 (507)
+|+|+.+++ . .++.|++|++....
T Consensus 259 ~~~g~l~vs--~-~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 259 MDDGSVVLA--S-KDYRLYIYRYVQLA 282 (286)
T ss_dssp ETTTEEEEE--E-TTTEEEEEECSCCC
T ss_pred CCCCcEEEE--C-CCCeEEEEEccccc
Confidence 999986665 3 58999999986543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-14 Score=131.60 Aligned_cols=234 Identities=11% Similarity=0.057 Sum_probs=165.2
Q ss_pred ceeeeeeCCCC-EEEEEcCC-------------------------eEEEEECCCCceeEEEecCCCCCCceEEEEEccCC
Q psy8285 167 YTSGLDWGYHD-TLAVALDT-------------------------SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRT 220 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~-------------------------~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 220 (507)
.+.++++++++ ++++...+ .|.+||..+++...... .+ +-.....++++|+|
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~-~~~~p~gia~d~~g 102 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-KN-LFYLPHGLSIDTDG 102 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-TT-TCSSEEEEEECTTS
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-CC-ccCCceEEEECCCC
Confidence 36789999988 55554333 69999998888765433 22 45678999999999
Q ss_pred CeEEEEeCCCCcEEEEeCCCce-eEEEEe---------ecCccEEEEEee---CCEEEEEe-cCCeEEEEECCCCCcCce
Q psy8285 221 TDLAVTNTCTEYIDLWHEQEER-LIQKLR---------THMHQVIAMCWN---GNLLSCGT-IGGNILHYDVRTHSDYPT 286 (507)
Q Consensus 221 ~~l~~~~~~dg~i~iwd~~~~~-~~~~~~---------~~~~~v~~~~~~---~~~l~~~~-~dg~i~i~d~~~~~~~~~ 286 (507)
+.+++. ..++.|++||..... .+..+. .+......++++ +.++++.+ .++.|++|+... . ...
T Consensus 103 ~l~v~d-~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~-~~~ 179 (329)
T 3fvz_A 103 NYWVTD-VALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-K-FVT 179 (329)
T ss_dssp CEEEEE-TTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-C-EEE
T ss_pred CEEEEE-CCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-C-EEE
Confidence 977666 888999999976542 455542 334467888884 55666665 589999999543 3 233
Q ss_pred eeec----------CCCceEEEEEcCC-CCEEEEEe-CCcEEEEEcCCCCCCCCeeee--cCCCCCeeEEEEccCCCcEE
Q psy8285 287 AITR----------EGDVVCGLKWSPN-GRYLASGS-NNTVKIWDFRQLDAKRPQVNN--QCHLSAVKAIAWCPWEPTLL 352 (507)
Q Consensus 287 ~~~~----------~~~~v~~~~~~~~-~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~ 352 (507)
.+.. +-.....++++|+ ++++++.. ++.|++||..++ +.+..+ ..+...+..++|+| + .++
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~p-g-~~~ 254 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---EFVREIKHASFGRNVFAISYIP-G-FLF 254 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEECCTTTTTCEEEEEEET-T-EEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---cEEEEEeccccCCCcceeeecC-C-EEE
Confidence 3321 1234789999999 55555554 499999999866 555555 34566788999999 3 344
Q ss_pred EEEcc-----CCCCeEEEEeCCCCCeeeeee---cC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 353 ATGGG-----ICDQTVRLWNSMNGKEKCHVK---TD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 353 ~~~~~-----~~d~~i~i~d~~~~~~~~~~~---~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
.+.+. ..+..|++||..+++.+..+. .+ ..+..++++|+|..+++ ...++.|++|++.
T Consensus 255 ~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyva--d~~~~~I~~~~~~ 321 (329)
T 3fvz_A 255 AVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIG--DAHTNTVWKFTLT 321 (329)
T ss_dssp EEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEE--ESSSCCEEEEEEE
T ss_pred EeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEE--ECCCCEEEEEeCC
Confidence 43321 124589999999999888874 22 56899999999966666 6778999999975
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-14 Score=133.61 Aligned_cols=242 Identities=10% Similarity=0.006 Sum_probs=171.0
Q ss_pred CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCc
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYP 285 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~ 285 (507)
...+.++.|++++..++.. ..++.++.| .++....+..+...+.+++| ++++++++..++.|.+||..+++ ..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-~~ 79 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPI-ISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-IK 79 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCC-CCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC-EE
T ss_pred ccccceeeecCCccceeEE-eecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCc-EE
Confidence 3457888999998877777 788899999 45666677777777889999 57777788888999999998765 22
Q ss_pred eeeecCCCceEEEEEcCCCCEEEEEe-C----CcEEEEEcCCCCCCCCeeee--cCCCCCeeEEEEccCCCcEEEEEcc-
Q psy8285 286 TAITREGDVVCGLKWSPNGRYLASGS-N----NTVKIWDFRQLDAKRPQVNN--QCHLSAVKAIAWCPWEPTLLATGGG- 357 (507)
Q Consensus 286 ~~~~~~~~~v~~~~~~~~~~~l~~~~-d----~~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~- 357 (507)
.....+...+.+++++|+++++++.. + +.|.+||.+.+ .....+ ..+...+..++++|++. ++++...
T Consensus 80 ~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~ 155 (333)
T 2dg1_A 80 RPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD---NLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRG 155 (333)
T ss_dssp EEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC---SCEEEECSSSSCCCEEEEEECTTSC-EEEEECCC
T ss_pred EEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC---EEEEEEccCccCCcccceEECCCCC-EEEEeccc
Confidence 22334567899999999999887766 3 48999998875 322122 12446789999999985 5554431
Q ss_pred ---CCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC-ccEEEE--------eecccc
Q psy8285 358 ---ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR-LHLIEE--------LKIHQE 425 (507)
Q Consensus 358 ---~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~-~~~~~~--------~~~~~~ 425 (507)
...+.|..+|..+++..........+..++|+|+++.|+++ ...++.|.+||..+ +..+.. +.++ .
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~-~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~ 233 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVT-ETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-E 233 (333)
T ss_dssp BTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEE-EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-S
T ss_pred cccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEE-eCCCCeEEEEEecCCCcCcccccceEEEecCCC-C
Confidence 01256777776665554433333568899999999977664 45678999999863 332221 1122 3
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccc
Q psy8285 426 RILSAVLSPDQTCVAAASADETISIWNCFPRDKKRK 461 (507)
Q Consensus 426 ~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 461 (507)
.+..++++++|+++++...++.|.+|+.. ++....
T Consensus 234 ~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~ 268 (333)
T 2dg1_A 234 GPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQ 268 (333)
T ss_dssp EEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEE
T ss_pred CCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEE
Confidence 67889999999988888888999999984 444333
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-14 Score=133.62 Aligned_cols=223 Identities=11% Similarity=0.113 Sum_probs=150.1
Q ss_pred CCceEEEEEccCCCeEEEEe--------CCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecC---C--e
Q psy8285 208 NAYISCVAWKPRTTDLAVTN--------TCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIG---G--N 272 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~--------~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d---g--~ 272 (507)
...+..+.+ +|++++... ..++.|.+||+.+++... + ..+..+.| ||+.|+..+.+ + .
T Consensus 14 ~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 14 FAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp SCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred eEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 345677777 888887651 125679999998876543 3 45677788 78888887754 3 4
Q ss_pred EEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-C---------------------------CcEEEEEcCCCC
Q psy8285 273 ILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-N---------------------------NTVKIWDFRQLD 324 (507)
Q Consensus 273 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d---------------------------~~i~i~d~~~~~ 324 (507)
|.+|++.+++ ...+..+.. +..++|+|||+.|+.++ + ..|++||+.++
T Consensus 87 l~~~~~~~g~--~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~- 162 (347)
T 2gop_A 87 IWVADLETLS--SKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE- 162 (347)
T ss_dssp EEEEETTTTE--EEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT-
T ss_pred EEEEECCCCc--eEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC-
Confidence 7888887754 223333334 89999999999888875 2 46899999876
Q ss_pred CCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC-------CCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEE
Q psy8285 325 AKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC-------DQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVT 397 (507)
Q Consensus 325 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (507)
+.+..+.. . .+..+.|+|++ +++++.... ...|.++| +++....... ..+..+ +|+|++|+.
T Consensus 163 --~~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~-~~~~~~--spdg~~l~~ 231 (347)
T 2gop_A 163 --EVIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFEK-VSFYAV--DSDGERILL 231 (347)
T ss_dssp --EEEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEEE-ESEEEE--EECSSCEEE
T ss_pred --eEEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCceEEeccC-cceeeE--CCCCCEEEE
Confidence 33244443 3 78899999999 555443211 12455555 5544333333 444444 999999987
Q ss_pred EeccC------CCeEEEEeCCCccEEEEeeccccceeE-EEECCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 398 SHGKQ------DCSLKMWEYPRLHLIEELKIHQERILS-AVLSPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 398 ~~g~~------d~~i~v~d~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
.+... ...|.+|| +++.......+...+.. +.|+ |+ ++++++.++.+++| +.+++
T Consensus 232 ~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~ 293 (347)
T 2gop_A 232 YGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE 293 (347)
T ss_dssp EECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS
T ss_pred EEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc
Confidence 42111 24788888 56655555566778886 9999 88 88999999999999 87443
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.3e-15 Score=150.15 Aligned_cols=262 Identities=9% Similarity=-0.039 Sum_probs=175.3
Q ss_pred CeEEEEECCCCceeEEEecC----CCCCCceEEEEEccCCCeEEEEe----CCCCcEEEEeCCCceeEEEEeecCccE--
Q psy8285 185 TSVYTWNTKTNKTQLLVEYP----TYDNAYISCVAWKPRTTDLAVTN----TCTEYIDLWHEQEERLIQKLRTHMHQV-- 254 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~v-- 254 (507)
+.|++.+...++...+.... + |...+..++|||||++|+.+. +.+..|++||+.+++.+. ..+...+
T Consensus 94 ~~l~~~~~~~~~~~~l~d~~~~a~~-~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~ 170 (695)
T 2bkl_A 94 AILYWRQGESGQEKVLLDPNGWSKD-GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKY 170 (695)
T ss_dssp CEEEEEESTTSCCEEEECGGGSSSS-SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTT
T ss_pred EEEEEEcCCCCCcEEEEchHHhccC-CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccc
Confidence 34566666566655555421 2 455789999999999999652 334689999999987641 1111222
Q ss_pred EEEEe--eCCEEEEEecCCe-------------EEEEECCCCCcCce-ee--ecCCCceEEEEEcCCCCEEEEEe-CC--
Q psy8285 255 IAMCW--NGNLLSCGTIGGN-------------ILHYDVRTHSDYPT-AI--TREGDVVCGLKWSPNGRYLASGS-NN-- 313 (507)
Q Consensus 255 ~~~~~--~~~~l~~~~~dg~-------------i~i~d~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~l~~~~-d~-- 313 (507)
..++| |++.|+.++.+.. |++|++.++..... .. ..+...+..+.|+|||++|+..+ ++
T Consensus 171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 250 (695)
T 2bkl_A 171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWS 250 (695)
T ss_dssp CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTT
T ss_pred cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCC
Confidence 56788 7889999988766 99999987652212 22 23445788999999999988776 34
Q ss_pred --cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEcc-CCCCeEEEEeCCCCCe---eeeeecC--CCeEE
Q psy8285 314 --TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGG-ICDQTVRLWNSMNGKE---KCHVKTD--SQVTS 385 (507)
Q Consensus 314 --~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~---~~~~~~~--~~i~~ 385 (507)
.|++++...+ ....+..+...+....+ +++. +++.+.. ..++.|.+||+.+++. ...+... ..+..
T Consensus 251 ~~~l~~~~~~~~----~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~ 324 (695)
T 2bkl_A 251 ENDVYWKRPGEK----DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLS 324 (695)
T ss_dssp EEEEEEECTTCS----SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEE
T ss_pred ceEEEEEcCCCC----ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEE
Confidence 6666655433 34444445556666666 6776 6665531 1258999999988763 3333332 35778
Q ss_pred EEECCCCCeEEEEeccCCCeEEEEeCC-CccEEEEeecc-ccceeEEEECCCCCEEEEE----eCCCcEEEEecCCCCc
Q psy8285 386 ILWSEQYRELVTSHGKQDCSLKMWEYP-RLHLIEELKIH-QERILSAVLSPDQTCVAAA----SADETISIWNCFPRDK 458 (507)
Q Consensus 386 ~~~s~~~~~l~~~~g~~d~~i~v~d~~-~~~~~~~~~~~-~~~i~~~~~s~~~~~l~s~----~~dg~i~iw~~~~~~~ 458 (507)
++|+ ++..+++ ...|+..++|.+. +++.+..+..+ .+.+..++++|++..++.. ...++|++||+.+++.
T Consensus 325 ~~~~-~~~lv~~--~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 325 VSIV-GGHLSLE--YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEE-TTEEEEE--EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEE-CCEEEEE--EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 8888 5555555 6778887777554 45566666654 6678889999999877632 2347899999988764
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-14 Score=143.92 Aligned_cols=240 Identities=10% Similarity=-0.010 Sum_probs=167.2
Q ss_pred cceeeeeeCCCC-EEEEE-c-CC----eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCc------
Q psy8285 166 FYTSGLDWGYHD-TLAVA-L-DT----SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEY------ 232 (507)
Q Consensus 166 ~~i~~~~~s~~~-~~~~~-~-~~----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~------ 232 (507)
..+..++||||+ .++.+ . +| .|++||+.+++...... ....+..++|+|||+.|+.+ +.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~----~~~~~~~~~wspDg~~l~~~-~~~~~~~~~~~ 199 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL----ERVKFSCMAWTHDGKGMFYN-AYPQQDGKSDG 199 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE----EEECSCCEEECTTSSEEEEE-ECCCCSSCCSS
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc----cCcccceEEEEeCCCEEEEE-EECCccccccc
Confidence 357789999998 55543 2 22 89999999998765432 22236789999999999988 66655
Q ss_pred ----------EEEEeCCCcee--EEEEee--cCccEEEEEe--eCCEEEEEec-----CCeEEEEECCC------CCcCc
Q psy8285 233 ----------IDLWHEQEERL--IQKLRT--HMHQVIAMCW--NGNLLSCGTI-----GGNILHYDVRT------HSDYP 285 (507)
Q Consensus 233 ----------i~iwd~~~~~~--~~~~~~--~~~~v~~~~~--~~~~l~~~~~-----dg~i~i~d~~~------~~~~~ 285 (507)
|++|++.+++. ...+.. +...+..+.| |+++|+..+. +..|++||+.+ +....
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 99999988652 222232 4455777888 7888887765 56899999986 43235
Q ss_pred eeeecCCCceEEEEEcCCCCEEEEEeC-----CcEEEEEcCCCCCCCCeeeecCCCC--CeeEEEEccCCCcEEEEEccC
Q psy8285 286 TAITREGDVVCGLKWSPNGRYLASGSN-----NTVKIWDFRQLDAKRPQVNNQCHLS--AVKAIAWCPWEPTLLATGGGI 358 (507)
Q Consensus 286 ~~~~~~~~~v~~~~~~~~~~~l~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~ 358 (507)
..+..+...+.. .|+|+|+.|+..++ ..|.+||+.++.. .....+..+.. .+..+.|++++ .++++...
T Consensus 280 ~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~- 355 (710)
T 2xdw_A 280 VKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE-SKWKVLVPEHEKDVLEWVACVRSN-FLVLCYLH- 355 (710)
T ss_dssp EEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCEEEEEEEETTT-EEEEEEEE-
T ss_pred EEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc-ccceeccCCCCCCeEEEEEEEcCC-EEEEEEEE-
Confidence 556666665554 58899988777652 3699999877521 02344444443 67889998655 67666654
Q ss_pred CCC--eEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEE--eccCCCeEEEEeCCCcc
Q psy8285 359 CDQ--TVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTS--HGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 359 ~d~--~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~--~g~~d~~i~v~d~~~~~ 415 (507)
++ .|.+||+.+++.+..+..+ ..+..+.++|+++.++.+ +....+.|+.||+.+++
T Consensus 356 -~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 356 -DVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp -TTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred -CCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 65 5777888778877766655 568889999999877753 23356789999998876
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-13 Score=127.01 Aligned_cols=245 Identities=10% Similarity=-0.004 Sum_probs=173.2
Q ss_pred eeeeCCCCEEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe
Q psy8285 170 GLDWGYHDTLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 170 ~~~~s~~~~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~ 248 (507)
.+.+..+.++.+. .++.|.+||..+++....+. .......+++++++ .++++...++.|.+||..+++....+.
T Consensus 48 ~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~----~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 48 SMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT----GFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp EEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE----CCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred EEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC----CCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 3555555555554 57899999999998866654 44678999999998 566662479999999999998887776
Q ss_pred ecC-----ccEEEEEeeCCEEEEEe--cCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-C--------
Q psy8285 249 THM-----HQVIAMCWNGNLLSCGT--IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-N-------- 312 (507)
Q Consensus 249 ~~~-----~~v~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-------- 312 (507)
... .....+++++..+.++. .++.|.++|+.+.+ ....+.. ......+.++|+|++++++. +
T Consensus 123 ~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~-~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~ 200 (328)
T 3dsm_A 123 CPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDK-VVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGY 200 (328)
T ss_dssp CTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTE-EEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCB
T ss_pred cCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCe-EEEEEEc-CCCccceEEcCCCCEEEEECCCccCCcccc
Confidence 433 13445666766666665 48899999999875 3333332 33456789999999777765 3
Q ss_pred --CcEEEEEcCCCCCCCCeeeecCC-CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeee--eec-CCCeEEE
Q psy8285 313 --NTVKIWDFRQLDAKRPQVNNQCH-LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH--VKT-DSQVTSI 386 (507)
Q Consensus 313 --~~i~i~d~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~--~~~-~~~i~~~ 386 (507)
+.|.++|..++ +....+... ......++++|+++.++++ ++.|.+||..+++.... +.. ......+
T Consensus 201 ~~~~v~~id~~t~---~v~~~~~~~~g~~p~~la~~~d~~~lyv~-----~~~v~~~d~~t~~~~~~~~~~~~~~~p~gi 272 (328)
T 3dsm_A 201 EAPSLYRIDAETF---TVEKQFKFKLGDWPSEVQLNGTRDTLYWI-----NNDIWRMPVEADRVPVRPFLEFRDTKYYGL 272 (328)
T ss_dssp CCCEEEEEETTTT---EEEEEEECCTTCCCEEEEECTTSCEEEEE-----SSSEEEEETTCSSCCSSCSBCCCSSCEEEE
T ss_pred CCceEEEEECCCC---eEEEEEecCCCCCceeEEEecCCCEEEEE-----ccEEEEEECCCCceeeeeeecCCCCceEEE
Confidence 57999999876 444444322 3468899999998777663 33899999988875421 222 2568899
Q ss_pred EECCCCCeEEEEec----cCCCeEEEEeCCCccEEEEeeccccceeEEEE
Q psy8285 387 LWSEQYRELVTSHG----KQDCSLKMWEYPRLHLIEELKIHQERILSAVL 432 (507)
Q Consensus 387 ~~s~~~~~l~~~~g----~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 432 (507)
+++|++..|+++ . ..++.|.+||.. ++.+.++..... -..++|
T Consensus 273 ~vdp~~g~lyva-~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~-P~~~~~ 319 (328)
T 3dsm_A 273 TVNPNNGEVYVA-DAIDYQQQGIVYRYSPQ-GKLIDEFYVGII-PGAFCW 319 (328)
T ss_dssp EECTTTCCEEEE-ECTTSSSEEEEEEECTT-CCEEEEEEEEES-EEEEEE
T ss_pred EEcCCCCeEEEE-cccccccCCEEEEECCC-CCEEEEEEeccC-cceEEE
Confidence 999966666654 4 568899999988 888888764332 344554
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-13 Score=123.78 Aligned_cols=277 Identities=10% Similarity=0.079 Sum_probs=185.4
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC---------CCCcEEEEeCCCceeEEEEeecC---
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT---------CTEYIDLWHEQEERLIQKLRTHM--- 251 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------~dg~i~iwd~~~~~~~~~~~~~~--- 251 (507)
++.|.++|..+++....+.. ...+ . ++++|+|++++++.. .++.|.+||..+++.+..+....
T Consensus 58 ~~~V~ViD~~t~~v~~~I~v---G~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r 132 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDG---GFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR 132 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEE---CSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC
T ss_pred CCEEEEEECCCCeEEEEEEC---CCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc
Confidence 67999999999998777665 3334 4 999999999998821 35789999999999988876422
Q ss_pred ----ccEEEEEe--eCCEEEEEec--CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q psy8285 252 ----HQVIAMCW--NGNLLSCGTI--GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQ 322 (507)
Q Consensus 252 ----~~v~~~~~--~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~ 322 (507)
.....+.+ ||++++++.. ++.|.++|+.+.+ ....+.-. + +...+....+.+++.+ ||.+.+.++..
T Consensus 133 ~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~-vv~tI~v~-g--~~~~~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 133 FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-FKRMLDVP-D--CYHIFPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECC-S--EEEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc-EEEEEECC-C--cceeecCCCceeEEECCCCCEEEEECCC
Confidence 12334555 8998888864 6899999999876 33333221 1 1122222334444444 67777777765
Q ss_pred CCCCCCeeeec----CCCCCe-eEEEEc-cCCCcEEEEEccCCCCeEEEEeCCCCC--eeeeee--------c---CCCe
Q psy8285 323 LDAKRPQVNNQ----CHLSAV-KAIAWC-PWEPTLLATGGGICDQTVRLWNSMNGK--EKCHVK--------T---DSQV 383 (507)
Q Consensus 323 ~~~~~~~~~~~----~~~~~v-~~~~~~-~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~--------~---~~~i 383 (507)
.. +...... ....++ ....|. ++| .++.... ++++++.|+.++. ....+. . ....
T Consensus 209 ~g--~v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~~~vs~---~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~ 282 (386)
T 3sjl_D 209 EG--TPEITHTEVFHPEDEFLINHPAYSQKAG-RLVWPTY---TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGW 282 (386)
T ss_dssp SS--CCEEEECCCCSCTTSCBCSCCEEETTTT-EEEEEBT---TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSS
T ss_pred CC--eEEEeecceeccccccccccceeEcCCC-cEEEEeC---CCEEEEEECCCCcceeecceeccccccccccccCCCc
Confidence 21 1111111 111222 124564 566 4544444 7899999997664 333332 0 1233
Q ss_pred EEEEECCCCCeEEEEecc--------CCCeEEEEeCCCccEEEEeeccccceeEEEECCCCC-EEEEEe-CCCcEEEEec
Q psy8285 384 TSILWSEQYRELVTSHGK--------QDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT-CVAAAS-ADETISIWNC 453 (507)
Q Consensus 384 ~~~~~s~~~~~l~~~~g~--------~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~-~dg~i~iw~~ 453 (507)
..++++|+++.++++... ..+.|.++|+.+++.+..+... ..++++++++|++ +|+++. .++.|.++|.
T Consensus 283 q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~ 361 (386)
T 3sjl_D 283 QQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDA 361 (386)
T ss_dssp SCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred ceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 457779999999885221 1357999999999999988753 4688999999997 666654 5899999999
Q ss_pred CCCCcccceeecCCCcceEEeec
Q psy8285 454 FPRDKKRKARQVGSGSSLEFAIL 476 (507)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~ 476 (507)
.+++.+...+..+...++.++++
T Consensus 362 ~t~k~~~~i~~~~~p~~l~~s~d 384 (386)
T 3sjl_D 362 ESGEELRSVNQLGHGPQVITTAD 384 (386)
T ss_dssp TTCCEEEEECCCCSSCCEEEECC
T ss_pred CCCcEEEEecCCCCCceeEECCc
Confidence 99999998888887777777654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-14 Score=144.94 Aligned_cols=180 Identities=10% Similarity=-0.056 Sum_probs=119.1
Q ss_pred eEEEEECCCCce--eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCC----cEEEEeCCCceeEEEEeecCccEEEEEe
Q psy8285 186 SVYTWNTKTNKT--QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTE----YIDLWHEQEERLIQKLRTHMHQVIAMCW 259 (507)
Q Consensus 186 ~i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 259 (507)
.|++|++.+++. ..+...+. +...+..+.|+|+|++|+++ +.++ .|.+|+..+++ ...+..+...+....+
T Consensus 203 ~v~~~~l~t~~~~~~lv~~~~~-~~~~~~~~~~SpDG~~l~~~-~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~ 279 (695)
T 2bkl_A 203 TIRYHTLGTEPSKDTVVHERTG-DPTTFLQSDLSRDGKYLFVY-ILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA 279 (695)
T ss_dssp EEEEEETTSCGGGCEEEECCCC-CTTCEEEEEECTTSCCEEEE-EEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE
T ss_pred EEEEEECCCCchhceEEEecCC-CCEEEEEEEECCCCCEEEEE-EeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe
Confidence 499999988763 34444443 55678999999999999987 5444 67777765554 3444455555555555
Q ss_pred -eCCEEEEEec----CCeEEEEECCCCCc-CceeeecC--CCceEEEEEcCCCCEEEEEe-CCcEEEEEcCC-CCCCCCe
Q psy8285 260 -NGNLLSCGTI----GGNILHYDVRTHSD-YPTAITRE--GDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQ-LDAKRPQ 329 (507)
Q Consensus 260 -~~~~l~~~~~----dg~i~i~d~~~~~~-~~~~~~~~--~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~-~~~~~~~ 329 (507)
+++ ++..+. ++.|.+||+.++.. ....+..+ ...+..++|+ ++.++++.. |+..++|.+.. + ...
T Consensus 280 ~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g---~~~ 354 (695)
T 2bkl_A 280 WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG---KPV 354 (695)
T ss_dssp ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC---CEE
T ss_pred cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC---Cee
Confidence 566 544443 57899999987642 12333333 4567888888 666777776 57777776552 3 344
Q ss_pred eeecCC-CCCeeEEEEccCCCcEEEEEc-cCCCCeEEEEeCCCCCe
Q psy8285 330 VNNQCH-LSAVKAIAWCPWEPTLLATGG-GICDQTVRLWNSMNGKE 373 (507)
Q Consensus 330 ~~~~~~-~~~v~~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~ 373 (507)
..+..+ .+.+..+.++|++..++++.+ ....++|++||+.+++.
T Consensus 355 ~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 355 RTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 444434 567888899999877765553 22347899999988874
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-13 Score=122.81 Aligned_cols=209 Identities=10% Similarity=-0.015 Sum_probs=157.8
Q ss_pred CCeEEEEeCCCCcEEEEeCCCceeEEEEeecC-ccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecC-CCce
Q psy8285 220 TTDLAVTNTCTEYIDLWHEQEERLIQKLRTHM-HQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITRE-GDVV 295 (507)
Q Consensus 220 ~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~v 295 (507)
++.|+++ +.++.|.+||.++++.+..+..+. ..+.++.+ +|++++ +.++.|..||. +++ ....+..+ ...+
T Consensus 5 ~~~lv~~-~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~-~~W~~~~~~~~~~ 79 (276)
T 3no2_A 5 QHLLVGG-SGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGR-ELWNIAAPAGCEM 79 (276)
T ss_dssp CEEEEEC-TTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSC-EEEEEECCTTCEE
T ss_pred CcEEEee-CCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCC-EEEEEcCCCCccc
Confidence 4567777 999999999999999999998765 45677777 788887 44778999999 555 34444443 3578
Q ss_pred EEEEEcCCCCEEEEEeC--CcEEEEEcCCCCCCCCeeeec------CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEe
Q psy8285 296 CGLKWSPNGRYLASGSN--NTVKIWDFRQLDAKRPQVNNQ------CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWN 367 (507)
Q Consensus 296 ~~~~~~~~~~~l~~~~d--~~i~i~d~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d 367 (507)
.++.+.++|+++++.++ +.|..+|. ++ +.+..+. .+......+++.++|..+ ++... ++.|..||
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~G---k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~l-v~~~~--~~~v~~~d 152 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KG---EVLSKTEFETGIERPHAQFRQINKNKKGNYL-VPLFA--TSEVREIA 152 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TS---CEEEEEEECCSCSSGGGSCSCCEECTTSCEE-EEETT--TTEEEEEC
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CC---CEEEEEeccCCCCcccccccCceECCCCCEE-EEecC--CCEEEEEC
Confidence 89999999999998763 66666665 33 3443332 122245566788888644 44443 89999999
Q ss_pred CCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccc------cceeEEEECCCCCEEEE
Q psy8285 368 SMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQ------ERILSAVLSPDQTCVAA 441 (507)
Q Consensus 368 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~------~~i~~~~~s~~~~~l~s 441 (507)
.. |+.+..+.....+.++...++|+.+++ +..++.|..+|..+++.+.++..+. ..+..+...++|..+++
T Consensus 153 ~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~--~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~ 229 (276)
T 3no2_A 153 PN-GQLLNSVKLSGTPFSSAFLDNGDCLVA--CGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYIC 229 (276)
T ss_dssp TT-SCEEEEEECSSCCCEEEECTTSCEEEE--CBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEE
T ss_pred CC-CCEEEEEECCCCccceeEcCCCCEEEE--eCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEE
Confidence 87 999999887766778888999999988 6777899999999999999886542 22778888999998887
Q ss_pred Ee
Q psy8285 442 AS 443 (507)
Q Consensus 442 ~~ 443 (507)
..
T Consensus 230 ~~ 231 (276)
T 3no2_A 230 NW 231 (276)
T ss_dssp EE
T ss_pred ec
Confidence 64
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-12 Score=120.41 Aligned_cols=231 Identities=10% Similarity=0.000 Sum_probs=154.6
Q ss_pred CCeEEEEECCCCceeEEEecCCC-C---CCceEEEEEccCCCeEEEEeCC-CCcEEEEeCCCceeEEE-EeecCccEEEE
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTY-D---NAYISCVAWKPRTTDLAVTNTC-TEYIDLWHEQEERLIQK-LRTHMHQVIAM 257 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~-~---~~~v~~~~~~~~~~~l~~~~~~-dg~i~iwd~~~~~~~~~-~~~~~~~v~~~ 257 (507)
++.|.+||..+.+........+. . ......+.|+|+|++|++++.. ++.|.++| .+++.+.. +.. ...+...
T Consensus 96 ~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~~~~~~ 173 (373)
T 2mad_H 96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PTCYHIH 173 (373)
T ss_pred CCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-CceEEEE
Confidence 67899999988877666554310 0 1235689999999999998323 57899999 99988777 543 2222222
Q ss_pred EeeCCEEEEEecCCeEEEEECCCCCcCceeee-----cCCCc-eEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCee
Q psy8285 258 CWNGNLLSCGTIGGNILHYDVRTHSDYPTAIT-----REGDV-VCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQV 330 (507)
Q Consensus 258 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~-v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~ 330 (507)
.+..+.+++.+.||.+.++|. +++.. .... ....+ .....+.+++..++..+ .+.+.+.|+..... ..+.
T Consensus 174 ~~~~~~~~~~~~dg~~~~vd~-~g~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~ 250 (373)
T 2mad_H 174 PGAPSTFYLLCAQGGLAKTDH-AGGAA-GAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKA 250 (373)
T ss_pred eCCCceEEEEcCCCCEEEEEC-CCcEE-EEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc-eEee
Confidence 224566777888999999999 65422 1111 11122 12345666665544444 58999999865411 1111
Q ss_pred eecC----------CCCCeeEEEEccCCCcEEEEEccC-------CCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCC
Q psy8285 331 NNQC----------HLSAVKAIAWCPWEPTLLATGGGI-------CDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYR 393 (507)
Q Consensus 331 ~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~ 393 (507)
.+.. .......+.++|++++++++.... .++.|.++|+.+++.+..+........+.|+|||+
T Consensus 251 ~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~ 330 (373)
T 2mad_H 251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGG 330 (373)
T ss_pred eeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCC
Confidence 1110 122344578999998888765310 14689999999999999998777899999999999
Q ss_pred -eEEEEeccCCCeEEEEeCCCccEEEEe
Q psy8285 394 -ELVTSHGKQDCSLKMWEYPRLHLIEEL 420 (507)
Q Consensus 394 -~l~~~~g~~d~~i~v~d~~~~~~~~~~ 420 (507)
.++++ ...++.|.++|+.+++.+..+
T Consensus 331 ~~l~v~-~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 331 PDLYAL-SAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred eEEEEE-cCCCCeEEEEECCCCCEEeee
Confidence 56663 335899999999999998874
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.62 E-value=6e-12 Score=117.19 Aligned_cols=257 Identities=8% Similarity=-0.033 Sum_probs=174.0
Q ss_pred eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC---------CCCcEEEEeCCCceeEEEEeec------
Q psy8285 186 SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT---------CTEYIDLWHEQEERLIQKLRTH------ 250 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------~dg~i~iwd~~~~~~~~~~~~~------ 250 (507)
.|.++|..+++....+.. ...+ .++++||+++++++.. .++.|.+||..+.+.+..+...
T Consensus 48 ~v~v~D~~t~~~~~~i~~---g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~ 122 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNG---GFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFD 122 (373)
T ss_pred EEEEEECCCCeEEEEecC---CCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccc
Confidence 889999999887654442 2333 9999999999999832 3678999999998887776532
Q ss_pred -CccEEEEEe--eCCEEEEEec--CCeEEEEECCCCCcCcee-eecCCCceEEEEEcCCCCE-EEEEe-CCcEEEEEcCC
Q psy8285 251 -MHQVIAMCW--NGNLLSCGTI--GGNILHYDVRTHSDYPTA-ITREGDVVCGLKWSPNGRY-LASGS-NNTVKIWDFRQ 322 (507)
Q Consensus 251 -~~~v~~~~~--~~~~l~~~~~--dg~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~-l~~~~-d~~i~i~d~~~ 322 (507)
......+.+ |+++|+++.. ++.|.++| .+++ .... +. ... ++.+.|+++. +++.+ ||.+.++|. +
T Consensus 123 ~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~-~~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~ 195 (373)
T 2mad_H 123 VGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS-SDDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-A 195 (373)
T ss_pred cCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC-EEeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-C
Confidence 112335555 8999998874 47899999 8765 3333 22 111 2455566543 33333 799999999 6
Q ss_pred CCCCCCeeeec-----CCCCC-eeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC--eeeeeec-----------CCCe
Q psy8285 323 LDAKRPQVNNQ-----CHLSA-VKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK--EKCHVKT-----------DSQV 383 (507)
Q Consensus 323 ~~~~~~~~~~~-----~~~~~-v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~-----------~~~i 383 (507)
+ +...... ....+ .....+.+++..++.... .+.+.+.|+..+. .+..+.. ....
T Consensus 196 g---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~ 269 (373)
T 2mad_H 196 G---GAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGW 269 (373)
T ss_pred C---cEEEEEeccccccCCcceeecceeEecCCEEEEEcC---CceEEEEeccCCcceEeeeeeecCCcccccceecCce
Confidence 5 3331111 11112 233566777766666554 7899999987653 2222221 1223
Q ss_pred EEEEECCCCCeEEEEecc--------CCCeEEEEeCCCccEEEEeeccccceeEEEECCCCC-EEEEEe-CCCcEEEEec
Q psy8285 384 TSILWSEQYRELVTSHGK--------QDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT-CVAAAS-ADETISIWNC 453 (507)
Q Consensus 384 ~~~~~s~~~~~l~~~~g~--------~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~-~dg~i~iw~~ 453 (507)
..+.++|+++.++++... ..+.|.++|..+++.+..+.. .....+++|+|||+ .++++. .++.|.++|+
T Consensus 270 ~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 270 QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred EeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 447899999988884211 135899999999999998864 33578999999999 777777 5899999999
Q ss_pred CCCCcccc
Q psy8285 454 FPRDKKRK 461 (507)
Q Consensus 454 ~~~~~~~~ 461 (507)
.+.+....
T Consensus 349 ~t~~vv~~ 356 (373)
T 2mad_H 349 GAGDQDQS 356 (373)
T ss_pred CCCCEEee
Confidence 99888766
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-12 Score=114.92 Aligned_cols=268 Identities=10% Similarity=0.019 Sum_probs=181.7
Q ss_pred ceeeeeeCCCC-EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 167 YTSGLDWGYHD-TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
...++.+.+++ ++.+. .++.|.+|+.. ++... ...+. ....+.++++.+++..+++. ..++.|..||.. ++..
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~-~~~~~~~i~~~~~g~l~v~~-~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPT-PDAKVMCLIVSSLGDIWFTE-NGANKIGKLSKK-GGFT 95 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSS-TTCCEEEEEECTTSCEEEEE-TTTTEEEEECTT-SCEE
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCC-CCCcceeEEECCCCCEEEEe-cCCCeEEEECCC-CCeE
Confidence 35578888888 55555 57899999987 66543 33333 45679999999999877766 668899999987 5543
Q ss_pred EE-EeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEc
Q psy8285 245 QK-LRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDF 320 (507)
Q Consensus 245 ~~-~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~ 320 (507)
.. .......+..+++ +++++++...++.|..+|.. ++............+..+++.++++++++.. ++.|..+|.
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN 174 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC
Confidence 22 2223456788888 46777666667899999987 4322122233446788999999999666665 488999998
Q ss_pred CCCCCCCCee-eecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeee-eec-CCCeEEEEECCCCCeEEE
Q psy8285 321 RQLDAKRPQV-NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH-VKT-DSQVTSILWSEQYRELVT 397 (507)
Q Consensus 321 ~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~-~~~i~~~~~s~~~~~l~~ 397 (507)
.+ +... ....+...+..+++++++ .++++... .+.|..||. +++.... +.. ...+.+++++++|+..++
T Consensus 175 -~g---~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~--~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~ 246 (300)
T 2qc5_A 175 -TG---KLEEYPLPTNAAAPVGITSGNDG-ALWFVEIM--GNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFT 246 (300)
T ss_dssp -TC---CEEEEECSSTTCCEEEEEECTTS-SEEEEETT--TTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred -CC---cEEEeeCCCCCCCcceEEECCCC-CEEEEccC--CCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEe
Confidence 43 2222 122344578899999988 56665543 678999998 5554332 222 256899999999986666
Q ss_pred EeccCCCeEEEEeCCCccEE-EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 398 SHGKQDCSLKMWEYPRLHLI-EELKIHQERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 398 ~~g~~d~~i~v~d~~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
...++.|..||. +++.. ..+......+.+++++++|+++++.. . .|..++.
T Consensus 247 --~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 247 --EWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp --ETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred --ccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 445789999998 44432 22333345688999999998666554 4 6666664
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.1e-13 Score=121.80 Aligned_cols=236 Identities=10% Similarity=-0.021 Sum_probs=158.6
Q ss_pred ceeeeeeCCCC-EEE-E-EcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 167 YTSGLDWGYHD-TLA-V-ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~-~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
....+++++++ +++ + ..++.|.+|+..+..... ... . +...+.+++++++++.+++. . ++.|.+||......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-~~~-~-~~~~p~~i~~~~~g~l~v~~-~-~~~i~~~d~~~~~~ 99 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-LPF-N-GLYQPQGLAVDGAGTVYVTD-F-NNRVVTLAAGSNNQ 99 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-CCC-C-SCCSCCCEEECTTCCEEEEE-T-TTEEEEECTTCSCC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-Eee-C-CcCCcceeEECCCCCEEEEc-C-CCEEEEEeCCCceE
Confidence 45578898887 554 4 467899999976554322 111 1 34567899999998855555 5 88999999876543
Q ss_pred EEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEc
Q psy8285 244 IQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDF 320 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~ 320 (507)
..........+..+++ +++++++...++.|.+|+..+.. ...........+.+++++++++++++.. ++.|.+||.
T Consensus 100 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~ 178 (270)
T 1rwi_B 100 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT-QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA 178 (270)
T ss_dssp EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS-CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECT
T ss_pred eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce-eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEec
Confidence 3222223356788888 57777776778899999765433 1111122234577899999999776665 489999998
Q ss_pred CCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEe
Q psy8285 321 RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSH 399 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~ 399 (507)
... ........+...+..++++++| .++++... ++.|.+||............. ..+.+++++++|+.+++
T Consensus 179 ~~~---~~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~--~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~-- 250 (270)
T 1rwi_B 179 ESN---NQVVLPFTDITAPWGIAVDEAG-TVYVTEHN--TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVA-- 250 (270)
T ss_dssp TTC---CEEECCCSSCCSEEEEEECTTC-CEEEEETT--TSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEE--
T ss_pred CCC---ceEeecccCCCCceEEEECCCC-CEEEEECC--CCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEE--
Confidence 764 2222222333678899999998 67766654 789999998765443322222 56899999999986666
Q ss_pred ccCCCeEEEEeCCCccE
Q psy8285 400 GKQDCSLKMWEYPRLHL 416 (507)
Q Consensus 400 g~~d~~i~v~d~~~~~~ 416 (507)
...++.|++++....+.
T Consensus 251 ~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 251 DRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp EGGGTEEEEECCCGGGS
T ss_pred ECCCCEEEEEcCCCccc
Confidence 67789999999876543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-12 Score=122.76 Aligned_cols=234 Identities=11% Similarity=0.064 Sum_probs=161.4
Q ss_pred cCCeEEEEECCCCceeEEEecCCCC----CCceEEEEEccCCCeEEEEeCC-CCcEEEEeCCCceeEEEEeecCccEEEE
Q psy8285 183 LDTSVYTWNTKTNKTQLLVEYPTYD----NAYISCVAWKPRTTDLAVTNTC-TEYIDLWHEQEERLIQKLRTHMHQVIAM 257 (507)
Q Consensus 183 ~~~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 257 (507)
.++.|.++|..+++....+.+.+.. ......+.|+|||++++++... ++.|.+.|+.+++.+..+..... ..+
T Consensus 147 ~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~ 224 (426)
T 3c75_H 147 RTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHI 224 (426)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEE
T ss_pred CCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eee
Confidence 4678999999999987777664100 1235678999999999998323 67899999999999888774221 222
Q ss_pred Ee-eCCEEEEEecCCeEEEEECCCCCcCcee----eecCCCce-EEEEEcCCCCEEEEEeC-CcEEEEEcCCCCC--CCC
Q psy8285 258 CW-NGNLLSCGTIGGNILHYDVRTHSDYPTA----ITREGDVV-CGLKWSPNGRYLASGSN-NTVKIWDFRQLDA--KRP 328 (507)
Q Consensus 258 ~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~v-~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~--~~~ 328 (507)
.. ....+++.+.||.+.+.+..+++ .... +.....++ ..+.|.+++..++..+. +.+.+.|+..... ...
T Consensus 225 ~p~g~~~~v~~~~dG~~~~V~~~~~~-v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~ 303 (426)
T 3c75_H 225 FPASPTVFYMNCRDGSLARVDFADGE-TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAP 303 (426)
T ss_dssp EEEETTEEEEEETTSSEEEEECCTTC-CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCC
T ss_pred ccCCCcEEEEEcCCCCEEEEECCCCc-EEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeee
Confidence 22 35677778889998888885443 2211 11111111 23567899888777774 8999999865310 001
Q ss_pred eeeec-------CCCCCeeEEEEccCCCcEEEEEccC-------CCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCC-
Q psy8285 329 QVNNQ-------CHLSAVKAIAWCPWEPTLLATGGGI-------CDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYR- 393 (507)
Q Consensus 329 ~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~-------~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~- 393 (507)
..... ........++++|++++++++.... .++.|.++|+.+.+.+..+........+.|+|||+
T Consensus 304 ~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~ 383 (426)
T 3c75_H 304 IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEP 383 (426)
T ss_dssp EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSC
T ss_pred eeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCE
Confidence 10000 0112223478999998888875310 14589999999999999998777789999999999
Q ss_pred eEEEEeccCCCeEEEEeCCCccEEEEe
Q psy8285 394 ELVTSHGKQDCSLKMWEYPRLHLIEEL 420 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~~~~~~~~ 420 (507)
+++++ ...++.|.++|+.+++.+.++
T Consensus 384 ~lyv~-n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 384 LLYAL-SAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEE-ETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEE-cCCCCeEEEEECCCCCEEEEe
Confidence 77774 346899999999999999887
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-12 Score=118.11 Aligned_cols=228 Identities=13% Similarity=0.103 Sum_probs=158.0
Q ss_pred eeeeeeCCCC--EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 168 TSGLDWGYHD--TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
..+++|+|++ ++.++ .++.|+.|+..++ . ..+.. +...+.+++++|+|+.+++. ..++.|.+||..+++..
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~~~~---~~~~~~~l~~~~dg~l~v~~-~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SPEMH---PSHHQNGHCLNKQGHLIACS-HGLRRLERQREPGGEWE 103 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EEEES---SCSSEEEEEECTTCCEEEEE-TTTTEEEEECSTTCCEE
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EEEEC---CCCCcceeeECCCCcEEEEe-cCCCeEEEEcCCCCcEE
Confidence 4579999986 45444 6889999999877 3 33333 56779999999999877766 67789999999887755
Q ss_pred EEEeec----CccEEEEEe--eCCEEEEE----e-------------cCCeEEEEECCCCCcCceeeecCCCceEEEEEc
Q psy8285 245 QKLRTH----MHQVIAMCW--NGNLLSCG----T-------------IGGNILHYDVRTHSDYPTAITREGDVVCGLKWS 301 (507)
Q Consensus 245 ~~~~~~----~~~v~~~~~--~~~~l~~~----~-------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 301 (507)
...... ...+..+++ +|+++++. + ..+.|..++.. ++ ...+..+......++|+
T Consensus 104 ~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~gi~~s 180 (296)
T 3e5z_A 104 SIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--LSAPIRDRVKPNGLAFL 180 (296)
T ss_dssp EEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--EEEEECCCSSEEEEEEC
T ss_pred EEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC--EEEeecCCCCCccEEEC
Confidence 443322 123456777 57777763 2 13456666654 22 34445566678899999
Q ss_pred CCCCEEEEEe-CCcEEEEEcC-CCCCCCC---eeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeee
Q psy8285 302 PNGRYLASGS-NNTVKIWDFR-QLDAKRP---QVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH 376 (507)
Q Consensus 302 ~~~~~l~~~~-d~~i~i~d~~-~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~ 376 (507)
|+++.+++.. ++.|++||+. .+ .. ...+..+...+..++++++|. ++++. ++.|.+||.. ++.+..
T Consensus 181 ~dg~~lv~~~~~~~i~~~~~~~~g---~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~----~~~v~~~~~~-g~~~~~ 251 (296)
T 3e5z_A 181 PSGNLLVSDTGDNATHRYCLNARG---ETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA----GDGVHVLTPD-GDELGR 251 (296)
T ss_dssp TTSCEEEEETTTTEEEEEEECSSS---CEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE----TTEEEEECTT-SCEEEE
T ss_pred CCCCEEEEeCCCCeEEEEEECCCC---cCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc----CCeEEEECCC-CCEEEE
Confidence 9999985555 4899999997 33 22 122233455677899999995 55543 5789999986 777777
Q ss_pred eecCCCeEEEEE-CCCCCeEEEEeccCCCeEEEEeCCCccE
Q psy8285 377 VKTDSQVTSILW-SEQYRELVTSHGKQDCSLKMWEYPRLHL 416 (507)
Q Consensus 377 ~~~~~~i~~~~~-s~~~~~l~~~~g~~d~~i~v~d~~~~~~ 416 (507)
+..+..+.+++| .|+++.|++ ++. +.+.-++..+.+.
T Consensus 252 ~~~~~~~~~~~f~~~d~~~L~v--~t~-~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 252 VLTPQTTSNLCFGGPEGRTLYM--TVS-TEFWSIETNVRGL 289 (296)
T ss_dssp EECSSCCCEEEEESTTSCEEEE--EET-TEEEEEECSCCBC
T ss_pred EECCCCceeEEEECCCCCEEEE--EcC-CeEEEEEcccccc
Confidence 776644899999 689998888 333 4566667665543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-12 Score=120.09 Aligned_cols=237 Identities=7% Similarity=-0.010 Sum_probs=163.2
Q ss_pred CCCceEEEEEccCCCeEEE-------EeCCCCcEEEEeCCCceeEEEEe----ecCccEEEEEee-C-CEEEEEecCCeE
Q psy8285 207 DNAYISCVAWKPRTTDLAV-------TNTCTEYIDLWHEQEERLIQKLR----THMHQVIAMCWN-G-NLLSCGTIGGNI 273 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~-------~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~-~-~~l~~~~~dg~i 273 (507)
.-....+++|++++..+++ . ..++.|.+||..+++...... ++...+..+.++ . ..|..++..+.|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~-~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNG-KPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETT-EECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCC-CCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCE
Confidence 3445789999999987777 4 568899999988776543322 144568888883 2 455555555589
Q ss_pred EEEECCCCCcCcee-eec----CCCceEEEEEcCCCCEEEEEe-C---------------CcEEEEEcCCCCCCCCeeee
Q psy8285 274 LHYDVRTHSDYPTA-ITR----EGDVVCGLKWSPNGRYLASGS-N---------------NTVKIWDFRQLDAKRPQVNN 332 (507)
Q Consensus 274 ~i~d~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~-d---------------~~i~i~d~~~~~~~~~~~~~ 332 (507)
.+||.. ++ .... ... ....+.+++++++|+++++.. + +.|..||.. + + ...+
T Consensus 95 ~~~d~~-g~-~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g---~-~~~~ 167 (314)
T 1pjx_A 95 LVVQTD-GT-FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G---Q-MIQV 167 (314)
T ss_dssp EEEETT-SC-EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S---C-EEEE
T ss_pred EEEeCC-CC-EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C---C-EEEe
Confidence 999987 44 2211 111 123578999999998877765 3 356666654 3 2 2222
Q ss_pred cCCCCCeeEEEEc----cCCCcEEEEEccCCCCeEEEEeCC-CCCe-----eeeeecC--CCeEEEEECCCCCeEEEEec
Q psy8285 333 QCHLSAVKAIAWC----PWEPTLLATGGGICDQTVRLWNSM-NGKE-----KCHVKTD--SQVTSILWSEQYRELVTSHG 400 (507)
Q Consensus 333 ~~~~~~v~~~~~~----~~~~~~~~~~~~~~d~~i~i~d~~-~~~~-----~~~~~~~--~~i~~~~~s~~~~~l~~~~g 400 (507)
..+......++|+ |+++.++++... ++.|.+||.. +++. ...+..+ ..+..++++++|+.+++ .
T Consensus 168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~--~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~--~ 243 (314)
T 1pjx_A 168 DTAFQFPNGIAVRHMNDGRPYQLIVAETP--TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA--N 243 (314)
T ss_dssp EEEESSEEEEEEEECTTSCEEEEEEEETT--TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE--E
T ss_pred ccCCCCcceEEEecccCCCCCEEEEEECC--CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEE--E
Confidence 2234456889999 998767776654 7899999976 4432 2222222 45788999999987777 4
Q ss_pred cCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEE-EEeCCCcEEEEecCC
Q psy8285 401 KQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVA-AASADETISIWNCFP 455 (507)
Q Consensus 401 ~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-s~~~dg~i~iw~~~~ 455 (507)
..++.|.+||..+++.+..+..+...+.+++|+|+++.|+ +...++.|..|++..
T Consensus 244 ~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 244 WGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred cCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 5678999999887777777766667899999999999554 445568899999864
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-12 Score=121.17 Aligned_cols=274 Identities=11% Similarity=0.059 Sum_probs=182.5
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC---------CCCcEEEEeCCCceeEEEEeec-----
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT---------CTEYIDLWHEQEERLIQKLRTH----- 250 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------~dg~i~iwd~~~~~~~~~~~~~----- 250 (507)
+.|.++|..+++....+.. ...+ .++++||+++++++.. .++.|.++|..+++.+..+.-.
T Consensus 99 ~~VsVID~~t~~vv~~I~v---G~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~ 173 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDG---GFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRF 173 (426)
T ss_dssp EEEEEEETTTTEEEEEEEE---CSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC
T ss_pred CeEEEEECCCCEEEEEEEC---CCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccc
Confidence 6999999999998877776 3344 8999999999999832 3678999999999988877532
Q ss_pred --CccEEEEEe--eCCEEEEEec--CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCC-CEEEEEe-CCcEEEEEcCC
Q psy8285 251 --MHQVIAMCW--NGNLLSCGTI--GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNG-RYLASGS-NNTVKIWDFRQ 322 (507)
Q Consensus 251 --~~~v~~~~~--~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~-d~~i~i~d~~~ 322 (507)
......+.+ |+++++++.. ++.|.+.|+.+.+ ....+.-.. . ....|++ +.+++.+ ||.+.+.+...
T Consensus 174 ~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k-vv~~I~v~g-~---~~~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 174 LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT-FDRMLDVPD-C---YHIFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECCS-E---EEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe-EEEEEEcCC-c---eeeccCCCcEEEEEcCCCCEEEEECCC
Confidence 112234455 7899888874 5789999999876 333333211 1 2233332 3333333 57766667643
Q ss_pred CCCCCCee----eecCCCCC-eeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCee--eeeec-----------CCCeE
Q psy8285 323 LDAKRPQV----NNQCHLSA-VKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK--CHVKT-----------DSQVT 384 (507)
Q Consensus 323 ~~~~~~~~----~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~-----------~~~i~ 384 (507)
+ +... .+.....+ ...+.+.+++..++++.. .+.+.+.|....... ..+.. .....
T Consensus 249 ~---~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~---~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~ 322 (426)
T 3c75_H 249 G---ETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY---TGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQ 322 (426)
T ss_dssp T---CCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT---TSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSS
T ss_pred C---cEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC---CCcEEEEeccCCceEEeeeeeeccccccccccccCCce
Confidence 3 2221 11111111 124567899888877764 789999998665421 11110 11122
Q ss_pred EEEECCCCCeEEEEecc--------CCCeEEEEeCCCccEEEEeeccccceeEEEECCCCC-EEEEEe-CCCcEEEEecC
Q psy8285 385 SILWSEQYRELVTSHGK--------QDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT-CVAAAS-ADETISIWNCF 454 (507)
Q Consensus 385 ~~~~s~~~~~l~~~~g~--------~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~s~~-~dg~i~iw~~~ 454 (507)
.++++|+++.++++... ..+.|.++|..+.+.+..+.... ....+.|+|||+ +++++. .++.|.++|+.
T Consensus 323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~spDg~~~lyv~n~~s~~VsVID~~ 401 (426)
T 3c75_H 323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQDAEPLLYALSAGTQTLHIYDAA 401 (426)
T ss_dssp CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence 36899999988884211 13579999999999999987533 578999999999 888888 58999999999
Q ss_pred CCCcccceeecCCCcceEEee
Q psy8285 455 PRDKKRKARQVGSGSSLEFAI 475 (507)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~ 475 (507)
+.+.+..+...+....+...+
T Consensus 402 t~kvv~tI~~vG~~P~~i~~~ 422 (426)
T 3c75_H 402 TGEELRSVDQLGRGPQIITTH 422 (426)
T ss_dssp TCCEEEEECCCSSSCCEEECC
T ss_pred CCCEEEEecCCCCCCcEEEcC
Confidence 999887764444444444433
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-12 Score=134.15 Aligned_cols=264 Identities=10% Similarity=0.013 Sum_probs=167.3
Q ss_pred eEEEEECC---CCceeEEEecC---CCCCCceEEEEEccCCCeEEEEeCCCC----cEEEEeCCCceeEEEEeecCccEE
Q psy8285 186 SVYTWNTK---TNKTQLLVEYP---TYDNAYISCVAWKPRTTDLAVTNTCTE----YIDLWHEQEERLIQKLRTHMHQVI 255 (507)
Q Consensus 186 ~i~iw~~~---~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~v~ 255 (507)
.+++.+.. .++...+++.. ..+...+..++|||||++|+.+.+.+| .|++||+.+++.+.... +...+.
T Consensus 134 ~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~ 212 (741)
T 1yr2_A 134 QLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFS 212 (741)
T ss_dssp EEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESC
T ss_pred EEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceec
Confidence 44555554 44444443321 103346889999999999998733333 59999999988765321 222234
Q ss_pred EEEe--eCCEEEEEecCCe--------------EEEEECCCCCcCcee-eec--CCCceEEEEEcCCCCEEEEEe-CC--
Q psy8285 256 AMCW--NGNLLSCGTIGGN--------------ILHYDVRTHSDYPTA-ITR--EGDVVCGLKWSPNGRYLASGS-NN-- 313 (507)
Q Consensus 256 ~~~~--~~~~l~~~~~dg~--------------i~i~d~~~~~~~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~-d~-- 313 (507)
.++| | +.|+.+..++. |++|++.+....... ... +...+..+.|+|||++|+..+ ++
T Consensus 213 ~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~ 291 (741)
T 1yr2_A 213 GLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTD 291 (741)
T ss_dssp CCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTC
T ss_pred cEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCC
Confidence 6778 6 88888876554 889999776522222 222 223588999999999888766 33
Q ss_pred ---cEEEEEcCCCCCCCC-eeeecCCCCCeeEEEEccCCCcEEEEEccC-CCCeEEEEeCCCC--CeeeeeecC-CCeEE
Q psy8285 314 ---TVKIWDFRQLDAKRP-QVNNQCHLSAVKAIAWCPWEPTLLATGGGI-CDQTVRLWNSMNG--KEKCHVKTD-SQVTS 385 (507)
Q Consensus 314 ---~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~--~~~~~~~~~-~~i~~ 385 (507)
.|++||+.++. .. ...+..+...+.... +|+++.+++..... .++.|.+||+.++ +....+... ..+..
T Consensus 292 ~~~~l~~~d~~~~~--~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~ 368 (741)
T 1yr2_A 292 PVNTVHVARVTNGK--IGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLES 368 (741)
T ss_dssp SCCEEEEEEEETTE--ECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEE
T ss_pred CcceEEEEECCCCC--CcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEE
Confidence 89999997641 12 444444555555553 48888877766421 2467999999875 233333333 34667
Q ss_pred EEECCCCCeEEEEeccCCCeEEEEeCC-CccEEEEeec-cccceeEEEECCCCCEEEEE----eCCCcEEEEecCCCC
Q psy8285 386 ILWSEQYRELVTSHGKQDCSLKMWEYP-RLHLIEELKI-HQERILSAVLSPDQTCVAAA----SADETISIWNCFPRD 457 (507)
Q Consensus 386 ~~~s~~~~~l~~~~g~~d~~i~v~d~~-~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~----~~dg~i~iw~~~~~~ 457 (507)
+.++ ++..+++ ...++..+||.+. +++....+.. +...+..+.++|+++.|+.. ...++|++||+.+++
T Consensus 369 ~~~~-~~~lv~~--~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 369 VGIA-GNRLFAS--YIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEE-BTEEEEE--EEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEE-CCEEEEE--EEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 7777 4444555 5678876666543 4556666654 35678899999998866532 234789999998765
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-11 Score=110.44 Aligned_cols=233 Identities=9% Similarity=-0.024 Sum_probs=165.1
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE-eecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL-RTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD 283 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~ 283 (507)
+...+.++++.++|..+++. ..++.|.+||.. ++..... ......+.++++ ++.++++...++.|..||... +.
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~-~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~ 89 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQ-HKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG-II 89 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEE-TTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS-CE
T ss_pred cCCCccceEECCCCCEEEEe-cCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC-cE
Confidence 55679999999999877766 668899999988 5443322 234567888888 567776666688899999862 21
Q ss_pred CceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCee-eecCCCCCeeEEEEccCCCcEEEEEccCCCC
Q psy8285 284 YPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQV-NNQCHLSAVKAIAWCPWEPTLLATGGGICDQ 361 (507)
Q Consensus 284 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~ 361 (507)
...........+.++++.++++++++.. ++.|..||. ++ +... ........+..+++.+++ .++++... ++
T Consensus 90 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g---~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~--~~ 162 (299)
T 2z2n_A 90 KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DG---KIREYELPNKGSYPSFITLGSDN-ALWFTENQ--NN 162 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC---CEEEEECSSTTCCEEEEEECTTS-CEEEEETT--TT
T ss_pred EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CC---CEEEecCCCCCCCCceEEEcCCC-CEEEEeCC--CC
Confidence 1111222455789999999998887776 489999998 43 2221 222345678999999998 56665543 78
Q ss_pred eEEEEeCCCCCeeee-eec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEE-eeccccceeEEEECCCCCE
Q psy8285 362 TVRLWNSMNGKEKCH-VKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEE-LKIHQERILSAVLSPDQTC 438 (507)
Q Consensus 362 ~i~i~d~~~~~~~~~-~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~ 438 (507)
.|..||. +++.... ... ...+..++++++|+.+++ ...++.|.+||. +++.... +..+...+.+++++++|+.
T Consensus 163 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l 238 (299)
T 2z2n_A 163 AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFV--EIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDL 238 (299)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE--ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCE
T ss_pred EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEE--ccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCE
Confidence 9999998 6665432 222 256889999999987666 455789999998 6654322 2334567899999999987
Q ss_pred EEEEeCCCcEEEEec
Q psy8285 439 VAAASADETISIWNC 453 (507)
Q Consensus 439 l~s~~~dg~i~iw~~ 453 (507)
+++...++.|..|+.
T Consensus 239 ~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 239 WFTEWGANKIGRLTS 253 (299)
T ss_dssp EEEETTTTEEEEEET
T ss_pred EEeccCCceEEEECC
Confidence 776667889999998
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-12 Score=115.12 Aligned_cols=233 Identities=11% Similarity=0.005 Sum_probs=163.7
Q ss_pred CCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecC-
Q psy8285 174 GYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHM- 251 (507)
Q Consensus 174 s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~- 251 (507)
+|++ +++++.++.|++||.++++....+... ....+.++.++|+|+.++ + .++.|..||. +++.+..+..+.
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~--~~~~~~~~~~~pdG~ilv-s--~~~~V~~~d~-~G~~~W~~~~~~~ 76 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLE--KGWECNSVAATKAGEILF-S--YSKGAKMITR-DGRELWNIAAPAG 76 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECC--TTCCCCEEEECTTSCEEE-E--CBSEEEEECT-TSCEEEEEECCTT
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCC--ccCCCcCeEECCCCCEEE-e--CCCCEEEECC-CCCEEEEEcCCCC
Confidence 4566 444568999999999999987766642 114688999999998887 4 4778999998 899988888653
Q ss_pred ccEEEEEe--eCCEEEEEec-CCeEEEEECCCCCcCceeee------cCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcC
Q psy8285 252 HQVIAMCW--NGNLLSCGTI-GGNILHYDVRTHSDYPTAIT------REGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR 321 (507)
Q Consensus 252 ~~v~~~~~--~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~ 321 (507)
..+.++.+ +++.+++.+. ++.+..+|.. ++ ....+. .+......+++.++|+++++.. ++.|..||.+
T Consensus 77 ~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk-~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 77 CEMQTARILPDGNALVAWCGHPSTILEVNMK-GE-VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp CEEEEEEECTTSCEEEEEESTTEEEEEECTT-SC-EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred ccccccEECCCCCEEEEecCCCCEEEEEeCC-CC-EEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence 46777777 7999988887 7778777763 33 222221 1112344567899999999888 5999999988
Q ss_pred CCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-------CCeEEEEECCCCCe
Q psy8285 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-------SQVTSILWSEQYRE 394 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-------~~i~~~~~s~~~~~ 394 (507)
+ +.+..+... ..+..+...+++..+++ +.. ++.|..+|..+++.+..+... ..+..++..++|..
T Consensus 155 -G---~~~w~~~~~-~~~~~~~~~~~g~~~v~-~~~--~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i 226 (276)
T 3no2_A 155 -G---QLLNSVKLS-GTPFSSAFLDNGDCLVA-CGD--AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGL 226 (276)
T ss_dssp -S---CEEEEEECS-SCCCEEEECTTSCEEEE-CBT--TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCE
T ss_pred -C---CEEEEEECC-CCccceeEcCCCCEEEE-eCC--CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCE
Confidence 6 667666543 45667888888854544 443 778999999999998888642 13788888899988
Q ss_pred EEEEeccCC------CeEEEEeC-CCccEEEEeec
Q psy8285 395 LVTSHGKQD------CSLKMWEY-PRLHLIEELKI 422 (507)
Q Consensus 395 l~~~~g~~d------~~i~v~d~-~~~~~~~~~~~ 422 (507)
+++...+.. +..+++++ ++++.+.++..
T Consensus 227 ~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~ 261 (276)
T 3no2_A 227 YICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND 261 (276)
T ss_dssp EEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred EEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence 877321111 23345554 45666666543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-11 Score=109.83 Aligned_cols=226 Identities=10% Similarity=0.133 Sum_probs=156.7
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY 284 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 284 (507)
...-..+..|+|++..|+.+...++.|..||..+++. ..+ .....+.++.+ ++++++ +. ++.|.+||..+++.
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~-~~~~~~~~i~~~~dG~l~v-~~-~~~l~~~d~~~g~~- 85 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV-TMDAPVSSVALRQSGGYVA-TI-GTKFCALNWKEQSA- 85 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEE-ECSSCEEEEEEBTTSSEEE-EE-TTEEEEEETTTTEE-
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEE-eCCCceEEEEECCCCCEEE-EE-CCeEEEEECCCCcE-
Confidence 3445678999997766666547789999999987765 223 34567888998 577544 44 56899999987642
Q ss_pred ceeeec----CCCceEEEEEcCCCCEEEEEe-C---------CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCc
Q psy8285 285 PTAITR----EGDVVCGLKWSPNGRYLASGS-N---------NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPT 350 (507)
Q Consensus 285 ~~~~~~----~~~~v~~~~~~~~~~~l~~~~-d---------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 350 (507)
...... ....++.++++|+|+++++.. . ..-.+|.+... ...............++|+|+++.
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~---g~~~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD---HHVKKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT---SCEEEEEEEESBEEEEEECTTSCE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC---CCEEEEeeccccccceEEcCCCCE
Confidence 111111 124578899999999777653 1 23455655432 122233334455789999999988
Q ss_pred EEEEEccCCCCeEEEEeC--CCCCee-----eeeec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec
Q psy8285 351 LLATGGGICDQTVRLWNS--MNGKEK-----CHVKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI 422 (507)
Q Consensus 351 ~~~~~~~~~d~~i~i~d~--~~~~~~-----~~~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~ 422 (507)
++++... ++.|..||+ .+++.. ..+.. ...+..++++++|++.++ ....+.|.+||..+++.+..+..
T Consensus 163 lyv~~~~--~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva--~~~~~~v~~~d~~tG~~~~~i~~ 238 (297)
T 3g4e_A 163 FYYIDSL--SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVA--CYNGGRVIRLDPVTGKRLQTVKL 238 (297)
T ss_dssp EEEEEGG--GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEE--EETTTEEEEECTTTCCEEEEEEC
T ss_pred EEEecCC--CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEE--EcCCCEEEEEcCCCceEEEEEEC
Confidence 8777764 789999987 455432 12222 246789999999987766 45677899999998999988887
Q ss_pred cccceeEEEEC-CCCCEEEEEeC
Q psy8285 423 HQERILSAVLS-PDQTCVAAASA 444 (507)
Q Consensus 423 ~~~~i~~~~~s-~~~~~l~s~~~ 444 (507)
+...+++++|. |+++.|+.++.
T Consensus 239 p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 239 PVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp SSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCceEEEEeCCCCCEEEEEcC
Confidence 77789999998 88887765553
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-12 Score=131.85 Aligned_cols=183 Identities=11% Similarity=0.079 Sum_probs=119.7
Q ss_pred CCeEEEEECCCCce--eEEEecCCCCCCceEEEEEccCCCeEEEEeCC-----CCcEEEEeCCCc--eeEEEEeecCccE
Q psy8285 184 DTSVYTWNTKTNKT--QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTC-----TEYIDLWHEQEE--RLIQKLRTHMHQV 254 (507)
Q Consensus 184 ~~~i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----dg~i~iwd~~~~--~~~~~~~~~~~~v 254 (507)
...|++|++.++.. ..+..... +...+..+.|+|||++|+.. +. ...|++||+.++ +....+..+....
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~-~~~~~~~~~~SpDG~~l~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 319 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPE-LPKRGHGASVSSDGRWVVIT-SSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ 319 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTT-CTTCEEEEEECTTSCEEEEE-EECTTCSCCEEEEEEEETTEECCCEEEECSSSSC
T ss_pred CCEEEEEECCCCchhCEEEeccCC-CCeEEEEEEECCCCCEEEEE-EEccCCCcceEEEEECCCCCCcccEEecCCCCce
Confidence 45688999877653 23333332 33468999999999999987 43 348999999876 3145555544444
Q ss_pred EEEEe-eCCEEEEEecC----CeEEEEECCCCC-cCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcC-CCCCC
Q psy8285 255 IAMCW-NGNLLSCGTIG----GNILHYDVRTHS-DYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR-QLDAK 326 (507)
Q Consensus 255 ~~~~~-~~~~l~~~~~d----g~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~-~~~~~ 326 (507)
....+ +++.|+..+.+ +.|.+||+.+.. .....+..+...+..++++ ++.++++.. ++..+||.+. .+
T Consensus 320 ~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g--- 395 (741)
T 1yr2_A 320 WDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG--- 395 (741)
T ss_dssp EEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS---
T ss_pred EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC---
Confidence 43333 88888887764 459999988742 2233444455567778887 555666666 5766666554 23
Q ss_pred CCeeeecC-CCCCeeEEEEccCCCcEEEEEc-cCCCCeEEEEeCCCCC
Q psy8285 327 RPQVNNQC-HLSAVKAIAWCPWEPTLLATGG-GICDQTVRLWNSMNGK 372 (507)
Q Consensus 327 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~ 372 (507)
.....+.. ..+.+..+.++|++..++++.+ ....++|++||+.+++
T Consensus 396 ~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 396 KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 34444443 3567889999999877765543 2235789999998876
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-11 Score=116.81 Aligned_cols=231 Identities=9% Similarity=-0.004 Sum_probs=160.4
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCC--eEEEEECCCCCcC
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGG--NILHYDVRTHSDY 284 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg--~i~i~d~~~~~~~ 284 (507)
.....++|+++++.+++. ..++.|++||..++...........+ . ++| +++.|+++..++ .|.+++......
T Consensus 131 ~~P~~la~d~~g~lyv~d-~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~- 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQ-RDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA- 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEE-TTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-
T ss_pred CCceEEEEeCCCCEEEEe-cCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCce-
Confidence 457899999999866665 77899999999887766555543332 2 666 678888888766 788888876542
Q ss_pred ceee----ecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeee-----cCCCCCe-e-EEEEccCCCcEE
Q psy8285 285 PTAI----TREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNN-----QCHLSAV-K-AIAWCPWEPTLL 352 (507)
Q Consensus 285 ~~~~----~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~-----~~~~~~v-~-~~~~~~~~~~~~ 352 (507)
...+ ......+.+++++|++..|+.+. ++.|+.||...+ . ...+ .++...- . .++|+|++..++
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~---~-~~~~~~~~~~g~~~~~P~~~ia~~p~~g~ly 282 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ---E-VTLIKQLELSGSLGTNPGPYLIYYFVDSNFY 282 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTC---C-EEEEEECCCCSCCCCSSCCEEEEETTTTEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC---C-EEEEecccccCCCCCCccccEEEeCCCCEEE
Confidence 2222 21445678899999555555555 488999999865 2 2222 1122222 3 999999766888
Q ss_pred EEEccCCCCeEEEEeCCCCCeeeeeec---------------CCCeEEEEECCCCCeEEEEecc-CCCeEEEEeCCCccE
Q psy8285 353 ATGGGICDQTVRLWNSMNGKEKCHVKT---------------DSQVTSILWSEQYRELVTSHGK-QDCSLKMWEYPRLHL 416 (507)
Q Consensus 353 ~~~~~~~d~~i~i~d~~~~~~~~~~~~---------------~~~i~~~~~s~~~~~l~~~~g~-~d~~i~v~d~~~~~~ 416 (507)
++... ++.|+.|+.... ....... -.....++++|+|+.+++ .. .++.|+.|++.+++.
T Consensus 283 v~d~~--~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva--d~~~~~~I~~~~~~~G~v 357 (409)
T 3hrp_A 283 MSDQN--LSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV--DGFKGYCLRKLDILDGYV 357 (409)
T ss_dssp EEETT--TTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE--ETTTTCEEEEEETTTTEE
T ss_pred EEeCC--CCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE--eCCCCCEEEEEECCCCEE
Confidence 87765 889999997543 2222111 134789999999996666 66 788999999877764
Q ss_pred EEEeecc---------------ccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 417 IEELKIH---------------QERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 417 ~~~~~~~---------------~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
..+.++ -.....+++++++.++++-..++.|+.+++
T Consensus 358 -~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 358 -STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 444433 235788999999888888888888888775
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-11 Score=112.34 Aligned_cols=235 Identities=10% Similarity=0.134 Sum_probs=156.7
Q ss_pred eeeeeeCCCC-EEEE--------EcCCeEEEEECCCCceeEEEe--cCCCCCCceEEEEEccC-CCeEEEEeCCCCcEEE
Q psy8285 168 TSGLDWGYHD-TLAV--------ALDTSVYTWNTKTNKTQLLVE--YPTYDNAYISCVAWKPR-TTDLAVTNTCTEYIDL 235 (507)
Q Consensus 168 i~~~~~s~~~-~~~~--------~~~~~i~iw~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~l~~~~~~dg~i~i 235 (507)
...++|++++ ++.+ ..++.|.+|+..+++...... ..+ +...+.+++++++ ++.+++. ..+.|.+
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~-~~~~~~~i~~~~~~g~l~v~~--~~~~l~~ 96 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNG-YGGIPAGCQCDRDANQLFVAD--MRLGLLV 96 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETT-EECCEEEEEECSSSSEEEEEE--TTTEEEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCC-CCCCCceEEEecCCCcEEEEE--CCCCEEE
Confidence 4578999887 5555 578899999988887654332 011 3356899999999 6545444 4457999
Q ss_pred EeCCCceeEEE-Eee----cCccEEEEEe--eCCEEEEEecC---------------CeEEEEECCCCCcCceeeecCCC
Q psy8285 236 WHEQEERLIQK-LRT----HMHQVIAMCW--NGNLLSCGTIG---------------GNILHYDVRTHSDYPTAITREGD 293 (507)
Q Consensus 236 wd~~~~~~~~~-~~~----~~~~v~~~~~--~~~~l~~~~~d---------------g~i~i~d~~~~~~~~~~~~~~~~ 293 (507)
||.. ++.... ... ....+.++.+ +++++++...+ +.|..++.. ++ ......+..
T Consensus 97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~ 172 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--MIQVDTAFQ 172 (314)
T ss_dssp EETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--EEEEEEEES
T ss_pred EeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC--EEEeccCCC
Confidence 9988 665433 221 1234678888 56676666554 567777765 32 222223334
Q ss_pred ceEEEEEc----CCCCEEEEEe--CCcEEEEEcC-CCCC--CCCeeeecCCC-CCeeEEEEccCCCcEEEEEccCCCCeE
Q psy8285 294 VVCGLKWS----PNGRYLASGS--NNTVKIWDFR-QLDA--KRPQVNNQCHL-SAVKAIAWCPWEPTLLATGGGICDQTV 363 (507)
Q Consensus 294 ~v~~~~~~----~~~~~l~~~~--d~~i~i~d~~-~~~~--~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~d~~i 363 (507)
....++++ |+++.++.+. ++.|.+||+. .+.. ......+..+. ..+..++++++|. ++++... ++.|
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~--~~~i 249 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWG--SSHI 249 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEET--TTEE
T ss_pred CcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcC--CCEE
Confidence 56889999 9997666654 4899999986 2200 00222333333 5678999999984 5555433 7899
Q ss_pred EEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 364 RLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 364 ~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
.+||..+++.+..+..+ ..+.+++++|+++.|+++ ...++.|..|++..
T Consensus 250 ~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~-~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT-EHENNAVWKFEWQR 299 (314)
T ss_dssp EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEE-ETTTTEEEEEECSS
T ss_pred EEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEE-eCCCCeEEEEeCCC
Confidence 99999878777666655 679999999999966664 45567899999764
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-10 Score=104.00 Aligned_cols=233 Identities=9% Similarity=-0.056 Sum_probs=164.1
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE-EeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK-LRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD 283 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~ 283 (507)
....+.++++.+++...++. ..++.|.+||.. ++.... +......+..+.+ ++++.++...++.|..+|.. ++.
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~-~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~ 94 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQ-HKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGF 94 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEE-TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCCcceeeECCCCCEEEEc-CCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCe
Confidence 45678999999999877766 678999999987 554332 2223466888888 46666666667889999987 432
Q ss_pred CceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCe-eeecCCCCCeeEEEEccCCCcEEEEEccCCCC
Q psy8285 284 YPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQ-VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ 361 (507)
Q Consensus 284 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~ 361 (507)
...........+.++++.++++++++.. ++.|..+|.. + +.. .........+..+++.+++. ++++... ++
T Consensus 95 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g---~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~--~~ 167 (300)
T 2qc5_A 95 TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G---TIYEYDLPNKGSYPAFITLGSDNA-LWFTENQ--NN 167 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S---CEEEEECSSTTCCEEEEEECTTSS-EEEEETT--TT
T ss_pred EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-C---CEEEccCCCCCCCceeEEECCCCC-EEEEecC--CC
Confidence 2122222346789999999999887776 5889999887 4 222 12232456789999999985 6665543 78
Q ss_pred eEEEEeCCCCCeeee-eec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEE-eeccccceeEEEECCCCCE
Q psy8285 362 TVRLWNSMNGKEKCH-VKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEE-LKIHQERILSAVLSPDQTC 438 (507)
Q Consensus 362 ~i~i~d~~~~~~~~~-~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~-~~~~~~~i~~~~~s~~~~~ 438 (507)
.|..+|. +++.... ... ...+..++++++|...++ ....+.|.+||. +++.... +..+...+.+++++++|+.
T Consensus 168 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l 243 (300)
T 2qc5_A 168 SIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFV--EIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEI 243 (300)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE--ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCE
T ss_pred eEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEE--ccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCE
Confidence 8999998 5554432 112 246899999999977666 455678999998 4443332 3334566889999999987
Q ss_pred EEEEeCCCcEEEEec
Q psy8285 439 VAAASADETISIWNC 453 (507)
Q Consensus 439 l~s~~~dg~i~iw~~ 453 (507)
+++...++.|..|+.
T Consensus 244 ~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 244 WFTEWGANQIGRITN 258 (300)
T ss_dssp EEEETTTTEEEEECT
T ss_pred EEeccCCCeEEEECC
Confidence 776666789999998
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-11 Score=123.69 Aligned_cols=243 Identities=12% Similarity=0.086 Sum_probs=162.5
Q ss_pred CCCceEEEEEccCCCeEEEEeCCC----CcEEEEeCCCceeEEE-EeecCccEEEEEe-eCCEEEEEecCC---------
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCT----EYIDLWHEQEERLIQK-LRTHMHQVIAMCW-NGNLLSCGTIGG--------- 271 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~d----g~i~iwd~~~~~~~~~-~~~~~~~v~~~~~-~~~~l~~~~~dg--------- 271 (507)
+...+..++|||||++|+.+.+.. ..|++||+.+++.+.. +... ....++| |++.|+.+..+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~WsDg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWLGNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEETTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEeCCCEEEEEEecCccccccccc
Confidence 455788999999999999753323 4799999999986543 2221 1123445 788888888774
Q ss_pred ----eEEEEECCCCCcCceeeec----CCCceEEEEEcCCCCEEEEEe----C-CcEEEEEcCCCCCCCCeeeecCCCCC
Q psy8285 272 ----NILHYDVRTHSDYPTAITR----EGDVVCGLKWSPNGRYLASGS----N-NTVKIWDFRQLDAKRPQVNNQCHLSA 338 (507)
Q Consensus 272 ----~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~----d-~~i~i~d~~~~~~~~~~~~~~~~~~~ 338 (507)
.|++|++.+.......+.. +......+.|+|||++|+... . +.|+++|+.++. .....+..+...
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~--~~~~~l~~~~~~ 282 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN--APLLTVQGDLDA 282 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT--CCCEEEECSSSS
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC--CceEEEeCCCCc
Confidence 3999999876532222222 334577899999999876543 2 589999997752 234455556555
Q ss_pred eeEEEEccCCCcEEEEEccC-CCCeEEEEeCCCCCe--eeeeecC-CCeEEEEECCCCCeEEEEeccCCC--eEEEEeCC
Q psy8285 339 VKAIAWCPWEPTLLATGGGI-CDQTVRLWNSMNGKE--KCHVKTD-SQVTSILWSEQYRELVTSHGKQDC--SLKMWEYP 412 (507)
Q Consensus 339 v~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~--~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~--~i~v~d~~ 412 (507)
.... |++++..+++.+... ..+.|..+|+.++.. ...+..+ ..+. .|++++++|+.. ...++ .|++|++.
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~-~~~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAE-YMVDATARVEQFDYE 358 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEE-EEETTEEEEEEECTT
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEE-EEECCeeEEEEEECC
Confidence 5555 677777887766431 136899999988764 2333333 3444 899999998874 33444 68999987
Q ss_pred CccEEEEee-ccccceeEEEECCCCCEEEEEeCC----CcEEEEecCCCCc
Q psy8285 413 RLHLIEELK-IHQERILSAVLSPDQTCVAAASAD----ETISIWNCFPRDK 458 (507)
Q Consensus 413 ~~~~~~~~~-~~~~~i~~~~~s~~~~~l~s~~~d----g~i~iw~~~~~~~ 458 (507)
.+ ....+. ...+.+..+.+++++..|+....+ +.++.||+.+++.
T Consensus 359 g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 359 GK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp SC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 54 344443 244567788888888876655443 7899999987654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-10 Score=106.53 Aligned_cols=221 Identities=10% Similarity=0.014 Sum_probs=148.4
Q ss_pred ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCcee
Q psy8285 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTA 287 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 287 (507)
...++.|+|++..++.+...++.|..||..+++.. .+. ....+.++.+ +++++++ +. ..|.+||..+++. ..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~-~~-~gl~~~d~~~g~~--~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIA-SD-DGLFLRDTATGVL--TL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEE-ET-TEEEEEETTTCCE--EE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEE-EC-CCEEEEECCCCcE--EE
Confidence 35678999986666655467889999999887643 232 3467888888 4555554 44 4599999877652 22
Q ss_pred eecC-----CCceEEEEEcCCCCEEEEEeC-----CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEcc
Q psy8285 288 ITRE-----GDVVCGLKWSPNGRYLASGSN-----NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGG 357 (507)
Q Consensus 288 ~~~~-----~~~v~~~~~~~~~~~l~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 357 (507)
+... ...+..++++|+|+++++..+ ....||.+.++ .+..+.........++|+|+++.++++...
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g----~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG----KVTKLFADISIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT----EEEEEEEEESSEEEEEECTTSCEEEEEETT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCC----cEEEeeCCCcccCCeEEcCCCCEEEEEECC
Confidence 2211 235889999999997776542 22344444333 222332233456799999999877776654
Q ss_pred CCCCeEEEEeCC--CC-Ce-----eeeeec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecccccee
Q psy8285 358 ICDQTVRLWNSM--NG-KE-----KCHVKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERIL 428 (507)
Q Consensus 358 ~~d~~i~i~d~~--~~-~~-----~~~~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~ 428 (507)
++.|.+||+. ++ +. ...+.. ...+..++++++|.+.++ ...++.|.+||. +++.+..+..+...++
T Consensus 200 --~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva--~~~~~~v~~~d~-~g~~~~~i~~~~~~~~ 274 (326)
T 2ghs_A 200 --VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA--RWGEGAVDRYDT-DGNHIARYEVPGKQTT 274 (326)
T ss_dssp --TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE--EETTTEEEEECT-TCCEEEEEECSCSBEE
T ss_pred --CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE--EeCCCEEEEECC-CCCEEEEEECCCCCcE
Confidence 7899999986 55 32 112221 245788999999987776 445678999998 6777777776777799
Q ss_pred EEEEC-CCCCEEEEEeCC
Q psy8285 429 SAVLS-PDQTCVAAASAD 445 (507)
Q Consensus 429 ~~~~s-~~~~~l~s~~~d 445 (507)
+++|+ ++++.|+.++..
T Consensus 275 ~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 275 CPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEEESTTSCEEEEEEBC
T ss_pred EEEEecCCCCEEEEEecC
Confidence 99998 888777555433
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-12 Score=117.71 Aligned_cols=170 Identities=13% Similarity=0.047 Sum_probs=127.1
Q ss_pred cEEEEEe--eCCEEEEEecCCeEEEEECCCCC---------cCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcC
Q psy8285 253 QVIAMCW--NGNLLSCGTIGGNILHYDVRTHS---------DYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFR 321 (507)
Q Consensus 253 ~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~ 321 (507)
++..+++ ...++++|+.+ .+.+|++.... ........+.. |+.++| |+++|+++.++.|++||++
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcCCcEEEEEch
Confidence 4556666 57788888877 55569865322 11212334566 999999 9999999977999999998
Q ss_pred CCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEecc
Q psy8285 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGK 401 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~ 401 (507)
+. ........+..++.++.+.+. .+++... ||.|.+||+.++.... ....+++++|||+| +++ |.
T Consensus 115 sl---~~~~~~~~~~~~v~~i~~~~p--~~av~~~---dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~v--g~ 179 (388)
T 1xip_A 115 EL---SEFRTVTSFEKPVFQLKNVNN--TLVILNS---VNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAV--LL 179 (388)
T ss_dssp ST---TCEEEEEECSSCEEEEEECSS--EEEEEET---TSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEE--EE
T ss_pred hh---hccCccceeecceeeEEecCC--CEEEEEC---CCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEE--EE
Confidence 87 444455567778888887764 3555544 9999999999887654 23579999999999 555 66
Q ss_pred CCCeEEEEeCCCccE--EEEe------e---ccccceeEEEECCCCCEEEE
Q psy8285 402 QDCSLKMWEYPRLHL--IEEL------K---IHQERILSAVLSPDQTCVAA 441 (507)
Q Consensus 402 ~d~~i~v~d~~~~~~--~~~~------~---~~~~~i~~~~~s~~~~~l~s 441 (507)
.||.+++|+...++. ..++ . +|...|.++.|.+++.++++
T Consensus 180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 899999998877664 4555 2 36788999999999998876
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.8e-11 Score=107.02 Aligned_cols=225 Identities=12% Similarity=0.073 Sum_probs=150.5
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY 284 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 284 (507)
.........|+|+++.|+.++..++.|..|+. +++ ...+..+...+..+.+ +++++++...++.|.+|+.. ++
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~-- 117 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ-- 117 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC--
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC--
Confidence 44567889999999865555478899999998 444 4455556677888888 57766655556789999986 33
Q ss_pred ceeeecC-----CCceEEEEEcCCCCEEEE----Ee--------------CCcEEEEEcCCCCCCCCeeeecCCCCCeeE
Q psy8285 285 PTAITRE-----GDVVCGLKWSPNGRYLAS----GS--------------NNTVKIWDFRQLDAKRPQVNNQCHLSAVKA 341 (507)
Q Consensus 285 ~~~~~~~-----~~~v~~~~~~~~~~~l~~----~~--------------d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 341 (507)
...+... ...+..+++.|+|+++++ |. .+.|+.+|..++ +... +. .......
T Consensus 118 ~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g---~~~~-~~-~~~~p~g 192 (305)
T 3dr2_A 118 AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS---PLQR-MA-DLDHPNG 192 (305)
T ss_dssp EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC---CCEE-EE-EESSEEE
T ss_pred EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC---cEEE-Ee-cCCCCcc
Confidence 2222111 134667999999998886 32 145777776554 2222 22 3345678
Q ss_pred EEEccCCCcEEEEEccC---CCCeEEEEeCCCCCee--eeee--cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc
Q psy8285 342 IAWCPWEPTLLATGGGI---CDQTVRLWNSMNGKEK--CHVK--TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 342 ~~~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~~--~~~~--~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~ 414 (507)
++|+|+++.++++.... ..+.|..|++..+... ..+. .......++++++|++.++ .. +.|.+|+. .+
T Consensus 193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~---~~-~gv~~~~~-~g 267 (305)
T 3dr2_A 193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS---SG-TGVCVFDS-DG 267 (305)
T ss_dssp EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC---CS-SEEEEECT-TS
T ss_pred eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe---cC-CcEEEECC-CC
Confidence 99999997777765410 0278999998755411 1111 1234567899999995444 33 45999997 57
Q ss_pred cEEEEeeccccceeEEEECCCCCEEEEEeCCCc
Q psy8285 415 HLIEELKIHQERILSAVLSPDQTCVAAASADET 447 (507)
Q Consensus 415 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~ 447 (507)
+.+..+..+. .+.+++|+++++.|+.++.++.
T Consensus 268 ~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 268 QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp CEEEEEECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 7777776554 5889999999988888877643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-10 Score=102.64 Aligned_cols=220 Identities=15% Similarity=0.128 Sum_probs=147.6
Q ss_pred eeeeeeCCC-C-EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 168 TSGLDWGYH-D-TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 168 i~~~~~s~~-~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
..+..|+++ + ++.+. .++.|+.||..+++.. ... ....+.+++++++++++ ++ . ++.|.+||..+++..
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~----~~~~~~~i~~~~dG~l~-v~-~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT----MDAPVSSVALRQSGGYV-AT-I-GTKFCALNWKEQSAV 86 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE----CSSCEEEEEEBTTSSEE-EE-E-TTEEEEEETTTTEEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe----CCCceEEEEECCCCCEE-EE-E-CCeEEEEECCCCcEE
Confidence 446889984 4 55554 6789999999887653 333 34679999999999844 44 3 568999999887654
Q ss_pred EEEee----cCccEEEEEe--eCCEEEEEecC---------CeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEE
Q psy8285 245 QKLRT----HMHQVIAMCW--NGNLLSCGTIG---------GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 245 ~~~~~----~~~~v~~~~~--~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 309 (507)
..... ....+.++.+ +++++++.... ..-.+|.+.... ............+.++|+||++.++.
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccccccceEEcCCCCEEEE
Confidence 43322 1235777888 57766554321 223444444322 12223333445688999999998766
Q ss_pred Ee--CCcEEEEEcC--CCCC--CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CC
Q psy8285 310 GS--NNTVKIWDFR--QLDA--KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQ 382 (507)
Q Consensus 310 ~~--d~~i~i~d~~--~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~ 382 (507)
+. ++.|.+||+. ++.. .+.+..+..+......++++++| +++++..+ .+.|..||..+++.+..+..+ ..
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~--~~~v~~~d~~tG~~~~~i~~p~~~ 242 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYN--GGRVIRLDPVTGKRLQTVKLPVDK 242 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEET--TTEEEEECTTTCCEEEEEECSSSB
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcC--CCEEEEEcCCCceEEEEEECCCCC
Confidence 65 4899999984 3310 01122223334567899999998 55555543 788999999999998888877 67
Q ss_pred eEEEEEC-CCCCeEEEEe
Q psy8285 383 VTSILWS-EQYRELVTSH 399 (507)
Q Consensus 383 i~~~~~s-~~~~~l~~~~ 399 (507)
+++++|. |+++.|++++
T Consensus 243 ~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 243 TTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEEEEEESGGGCEEEEEE
T ss_pred ceEEEEeCCCCCEEEEEc
Confidence 9999998 8988887754
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.2e-10 Score=103.81 Aligned_cols=251 Identities=15% Similarity=0.116 Sum_probs=162.7
Q ss_pred eEEEEECCC-----CceeEEEecCCCCCCceEEEEE-----------c--cCCCeEEEEeCCCCcEEEEeCCCc----ee
Q psy8285 186 SVYTWNTKT-----NKTQLLVEYPTYDNAYISCVAW-----------K--PRTTDLAVTNTCTEYIDLWHEQEE----RL 243 (507)
Q Consensus 186 ~i~iw~~~~-----~~~~~~~~~~~~~~~~v~~~~~-----------~--~~~~~l~~~~~~dg~i~iwd~~~~----~~ 243 (507)
.|.+.|+.. ++......++. .......+.| + +++++|++.+..++.|.++|+.+. +.
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~-~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~ 122 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPY-INDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKI 122 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSS-SCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCC-CCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCcee
Confidence 455566654 56665555554 3334445555 6 889999998788999999999765 66
Q ss_pred EEEEee-------cCccEEEEEe--eCCEEEEEecC------CeEEEEECCCCCcCceeeecC--C-CceEEEEEcCCCC
Q psy8285 244 IQKLRT-------HMHQVIAMCW--NGNLLSCGTIG------GNILHYDVRTHSDYPTAITRE--G-DVVCGLKWSPNGR 305 (507)
Q Consensus 244 ~~~~~~-------~~~~v~~~~~--~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~-~~v~~~~~~~~~~ 305 (507)
.+.+.. .......+.. ++ +++++..+ |.|.++|..+.+ ........ . ..-+.+-|+|+++
T Consensus 123 ~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~-v~~~~~~~~~~~~~~Yd~~~~p~~~ 200 (462)
T 2ece_A 123 IKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFE-PLGKWEIDRGDQYLAYDFWWNLPNE 200 (462)
T ss_dssp EEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCC-EEEECCSBCTTCCCCCCEEEETTTT
T ss_pred eeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCe-EEEEEccCCCCccccceEEECCCCC
Confidence 666631 1112233333 56 66666555 789999999876 33333311 1 2234578899999
Q ss_pred EEEEEe--------------------CCcEEEEEcCCCCCCCCeeeecCC--CCCeeEEEE--ccCCCcEEEEEc---cC
Q psy8285 306 YLASGS--------------------NNTVKIWDFRQLDAKRPQVNNQCH--LSAVKAIAW--CPWEPTLLATGG---GI 358 (507)
Q Consensus 306 ~l~~~~--------------------d~~i~i~d~~~~~~~~~~~~~~~~--~~~v~~~~~--~~~~~~~~~~~~---~~ 358 (507)
.+++.. ..+|.+||+.++ +.+.++... ......+.| +|++++.++++. ..
T Consensus 201 ~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~---k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~ 277 (462)
T 2ece_A 201 VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR---KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKD 277 (462)
T ss_dssp EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT---EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTT
T ss_pred EEEEccCcCccccccccchhhhhhccCCEEEEEECCCC---cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccC
Confidence 988884 489999999876 555555432 123455656 999988777664 01
Q ss_pred CCCeEEEEeCCCCCe--eeee--ec-----------------CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC---c
Q psy8285 359 CDQTVRLWNSMNGKE--KCHV--KT-----------------DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR---L 414 (507)
Q Consensus 359 ~d~~i~i~d~~~~~~--~~~~--~~-----------------~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~---~ 414 (507)
.+++|.+|....++. .+.+ .. ......+.+||||++|+++ .-..+.|.+||+.. .
T Consensus 278 Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVS-nrg~d~VavfdV~d~~~~ 356 (462)
T 2ece_A 278 LSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLS-LWGIGEVRQYDISNPFKP 356 (462)
T ss_dssp CCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEE-ETTTTEEEEEECSSTTSC
T ss_pred CCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEE-eCCCCEEEEEEecCCCCc
Confidence 277887765544321 1111 00 2346789999999999997 45578999999853 3
Q ss_pred cEEEEeeccc--------------cceeEEEECCCCCEEEEEe
Q psy8285 415 HLIEELKIHQ--------------ERILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 415 ~~~~~~~~~~--------------~~i~~~~~s~~~~~l~s~~ 443 (507)
+.+..+.... +.-..++++|||++|+++.
T Consensus 357 ~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 357 VLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 4555554320 1247899999999999888
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.9e-12 Score=116.02 Aligned_cols=172 Identities=12% Similarity=0.047 Sum_probs=127.6
Q ss_pred ceeeeeeCCCC-EEEEEcCCeEEEEECCCCc---------eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEE
Q psy8285 167 YTSGLDWGYHD-TLAVALDTSVYTWNTKTNK---------TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLW 236 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iw 236 (507)
.++.+++++.+ +++++....+.+|++++.. .......+ +.. |+.++| ++..|+++ .++.|++|
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~--lp~-V~~l~f--d~~~L~v~--~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE--IPD-VIFVCF--HGDQVLVS--TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTT-EEEEEE--ETTEEEEE--ESSEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee--CCC-eeEEEE--CCCEEEEE--cCCcEEEE
Confidence 47789999976 6666666688889876443 22211121 445 999999 88888887 77999999
Q ss_pred eCCCceeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 237 HEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 237 d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
|+.+.........|..++.++.+....+++++.||.|.+||+.+... .. +...|+|++|+|+| ++.|. ||.+
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~--~~---~~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST--KQ---LAQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE--EE---EEESEEEEEECSSE--EEEEETTSCE
T ss_pred EchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcc--cc---ccCCceEEEEcCCc--eEEEEcCCcE
Confidence 99887766677778888988888544588999999999999997652 11 44689999999999 44555 8999
Q ss_pred EEEEcCCCCCCCC--eeee------c---CCCCCeeEEEEccCCCcEEEEE
Q psy8285 316 KIWDFRQLDAKRP--QVNN------Q---CHLSAVKAIAWCPWEPTLLATG 355 (507)
Q Consensus 316 ~i~d~~~~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~~~~~~ 355 (507)
++|+.... .. ..++ . +|...|.++.|.+++..+++-.
T Consensus 185 ~~~~~~~~---~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 185 QSFAWRNG---EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEETT---EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCCc---cccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99988765 22 2233 2 3678899999999885555443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.2e-10 Score=108.22 Aligned_cols=226 Identities=10% Similarity=-0.046 Sum_probs=152.3
Q ss_pred eeeeeeCCCC-EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCC--cEEEEeCCCcee
Q psy8285 168 TSGLDWGYHD-TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTE--YIDLWHEQEERL 243 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg--~i~iwd~~~~~~ 243 (507)
...|+|++++ ++++. .++.|++||..++........ . .... ++|+|+++.|+++ ..++ .|.+++...+..
T Consensus 133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~---~-~~~~-ia~~~~g~~l~~~-d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG---F-KGGK-PAVTKDKQRVYSI-GWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp EEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET---C-CBCB-CEECTTSSEEEEE-BSSTTCEEEEEEGGGTTC
T ss_pred ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc---C-CCCc-eeEecCCCcEEEE-ecCCCceEEEEEcCCCce
Confidence 4579999988 55544 568999999988877655543 2 2233 9999999999888 6655 799998876554
Q ss_pred EEEE----eecCccEEEEEee--CCEEEEEecCCeEEEEECCCCCcCceee-----ecCCCce--EEEEEcCCCCEEEEE
Q psy8285 244 IQKL----RTHMHQVIAMCWN--GNLLSCGTIGGNILHYDVRTHSDYPTAI-----TREGDVV--CGLKWSPNGRYLASG 310 (507)
Q Consensus 244 ~~~~----~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----~~~~~~v--~~~~~~~~~~~l~~~ 310 (507)
...+ ......+.+++++ +..|+.+..++.|+.||..+.. ...+ .+....- ..++|+|++..|+.+
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~--~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE--VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC--EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC--EEEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence 3333 2134556677773 4566667778899999998764 2222 1122222 289999965555555
Q ss_pred e--CCcEEEEEcCCCCCCCCeeeecCC---------------CCCeeEEEEccCCCcEEEEEc-cCCCCeEEEEeCCCCC
Q psy8285 311 S--NNTVKIWDFRQLDAKRPQVNNQCH---------------LSAVKAIAWCPWEPTLLATGG-GICDQTVRLWNSMNGK 372 (507)
Q Consensus 311 ~--d~~i~i~d~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~ 372 (507)
. ++.|+.|+.... ...+.++ -.....++++|+|. ++++.. + ++.|+.||+.+++
T Consensus 285 d~~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~--~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFK--GYCLRKLDILDGY 356 (409)
T ss_dssp ETTTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTT--TCEEEEEETTTTE
T ss_pred eCCCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCC--CCEEEEEECCCCE
Confidence 4 489999987642 2222222 23578999999985 666655 5 8999999987776
Q ss_pred eeeeeec---------------CCCeEEEEECCCCCeEEEEeccCCCeEEEEeC
Q psy8285 373 EKCHVKT---------------DSQVTSILWSEQYRELVTSHGKQDCSLKMWEY 411 (507)
Q Consensus 373 ~~~~~~~---------------~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~ 411 (507)
....... -.....++++++|..+++ ...++.|+.+++
T Consensus 357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa--d~~n~~Ir~i~~ 408 (409)
T 3hrp_A 357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIA--EAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE--ESTTCEEEEEEE
T ss_pred EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEE--ECCCCeEEEEEe
Confidence 4433322 135889999999777666 667788887764
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-10 Score=106.27 Aligned_cols=238 Identities=7% Similarity=-0.039 Sum_probs=152.4
Q ss_pred CCeEEEEECCCCceeEEEecCCCC----CCceEEEEEccCCCeEEEEeCC-CCcEEE--EeCCCceeEEEEeecCccEEE
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYD----NAYISCVAWKPRTTDLAVTNTC-TEYIDL--WHEQEERLIQKLRTHMHQVIA 256 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~-dg~i~i--wd~~~~~~~~~~~~~~~~v~~ 256 (507)
++.|.+||+.+++....+.+.+.. ......++++|||++++++... +..+.+ +|..+ +..+... .. ..
T Consensus 95 ~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~-~~ 169 (368)
T 1mda_H 95 TDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC-FH 169 (368)
T ss_dssp EEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC-CC
T ss_pred CCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc-eE
Confidence 678999999999988877764101 1345689999999999998323 467888 99877 4444321 11 11
Q ss_pred EEe-eCCEEEEEecCCeEEEEECCC----CCcCce----eeecCCCceEEEEEcCCCCE-EEEEeCCcEEEEEcCCCCCC
Q psy8285 257 MCW-NGNLLSCGTIGGNILHYDVRT----HSDYPT----AITREGDVVCGLKWSPNGRY-LASGSNNTVKIWDFRQLDAK 326 (507)
Q Consensus 257 ~~~-~~~~l~~~~~dg~i~i~d~~~----~~~~~~----~~~~~~~~v~~~~~~~~~~~-l~~~~d~~i~i~d~~~~~~~ 326 (507)
+.. ....+++.+.|+.+.+.|+.+ ...... .+.-...+. . .+++.. +++.. +.+.+.|......
T Consensus 170 ~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~- 243 (368)
T 1mda_H 170 IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGA- 243 (368)
T ss_dssp CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCC-
T ss_pred EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcc-
Confidence 223 345566677788888888876 111110 111122333 3 455444 44444 8999999865310
Q ss_pred CCeeeecC----------CCCCeeEEEEccCCCcEEEEEccC-C-----CCeEEEEeCCCCCeeeeeecCCCeEEEEECC
Q psy8285 327 RPQVNNQC----------HLSAVKAIAWCPWEPTLLATGGGI-C-----DQTVRLWNSMNGKEKCHVKTDSQVTSILWSE 390 (507)
Q Consensus 327 ~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~-~-----d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~ 390 (507)
+.+..+.- .......+.++|++++++++.... . +..+.++|+.+++.+..+........+.|+|
T Consensus 244 ~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~ 323 (368)
T 1mda_H 244 TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQ 323 (368)
T ss_dssp EEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECC
T ss_pred eEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECC
Confidence 11111110 111222378999998888754310 0 1245599999999999888777889999999
Q ss_pred CCCeEEEEecc-CCCeEEEEeCCCccEEEEeeccccceeEEEECC
Q psy8285 391 QYRELVTSHGK-QDCSLKMWEYPRLHLIEELKIHQERILSAVLSP 434 (507)
Q Consensus 391 ~~~~l~~~~g~-~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~ 434 (507)
||++++++ .. .++.|.++|+.+++.+..+..... -..+++.+
T Consensus 324 Dg~~l~va-~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 324 DGASDNYA-NSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp SSSCEEEE-EETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred CCCEEEEE-ccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence 99976665 34 589999999999999999876544 34555543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-09 Score=99.39 Aligned_cols=215 Identities=11% Similarity=0.032 Sum_probs=142.2
Q ss_pred eeeeeeCCC-C-EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 168 TSGLDWGYH-D-TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 168 i~~~~~s~~-~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.....|+|+ + ++.+. .++.|..|+..+++... .. ....+.+++|+|+++++++. .+ .|.+||..+++..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~----~~~~v~~i~~~~dg~l~v~~--~~-gl~~~d~~~g~~~ 122 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA----LPFMGSALAKISDSKQLIAS--DD-GLFLRDTATGVLT 122 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE----CSSCEEEEEEEETTEEEEEE--TT-EEEEEETTTCCEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE----CCCcceEEEEeCCCeEEEEE--CC-CEEEEECCCCcEE
Confidence 356889996 3 44444 67899999998876543 33 34579999999999876654 33 4999999887654
Q ss_pred EEEee----cCccEEEEEe--eCCEEEEEec------CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-
Q psy8285 245 QKLRT----HMHQVIAMCW--NGNLLSCGTI------GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS- 311 (507)
Q Consensus 245 ~~~~~----~~~~v~~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 311 (507)
..... ....+.++.+ +++++++... .+.|..++ +++ ...+.........++|+||++.++.+.
T Consensus 123 ~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~--~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 123 LHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK--VTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp EEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE--EEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred EEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc--EEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 33221 1235778888 5666554432 24566666 332 222222334567899999999876665
Q ss_pred -CCcEEEEEcC--CC-CCC--CCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeE
Q psy8285 312 -NNTVKIWDFR--QL-DAK--RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVT 384 (507)
Q Consensus 312 -d~~i~i~d~~--~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~ 384 (507)
++.|.+||+. ++ ... +.+..+.........++++++|. ++++..+ ++.|..||. +++.+..+..+ ..+.
T Consensus 199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~-lwva~~~--~~~v~~~d~-~g~~~~~i~~~~~~~~ 274 (326)
T 2ghs_A 199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWG--EGAVDRYDT-DGNHIARYEVPGKQTT 274 (326)
T ss_dssp TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEET--TTEEEEECT-TCCEEEEEECSCSBEE
T ss_pred CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCC-EEEEEeC--CCEEEEECC-CCCEEEEEECCCCCcE
Confidence 3899999986 33 111 11222223345678899999985 5544433 689999998 67777777665 4699
Q ss_pred EEEEC-CCCCeEEEE
Q psy8285 385 SILWS-EQYRELVTS 398 (507)
Q Consensus 385 ~~~~s-~~~~~l~~~ 398 (507)
+++|+ |+++.|+++
T Consensus 275 ~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 275 CPAFIGPDASRLLVT 289 (326)
T ss_dssp EEEEESTTSCEEEEE
T ss_pred EEEEecCCCCEEEEE
Confidence 99998 898887764
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-10 Score=106.91 Aligned_cols=263 Identities=9% Similarity=-0.019 Sum_probs=169.4
Q ss_pred eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC---------CCCcEEEEeCCCceeEEEEeecC-----
Q psy8285 186 SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT---------CTEYIDLWHEQEERLIQKLRTHM----- 251 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------~dg~i~iwd~~~~~~~~~~~~~~----- 251 (507)
.|.++|..+++....+... ..+ .+.++|++++++++.+ .++.|.+||+.+++.+..+....
T Consensus 47 ~vsvID~~t~~v~~~i~vG---~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGA---FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTTEEEEEEEEC---TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCCCeEEEEEeCC---CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence 8999999999988777763 344 7999999999999831 36889999999999999886431
Q ss_pred --ccEEEEEe--eCCEEEEEec--CCeEEE--EECCCCCcCceeeecCCCceEEEEEcCCCCE-EEEEe-CCcEEEEEcC
Q psy8285 252 --HQVIAMCW--NGNLLSCGTI--GGNILH--YDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGS-NNTVKIWDFR 321 (507)
Q Consensus 252 --~~v~~~~~--~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~-d~~i~i~d~~ 321 (507)
.....+.+ |+++++++.. ...+.+ +|..+ ...+.. ... ..+.|+++. +++.+ |+.+.+.|+.
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECC
T ss_pred cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECc
Confidence 12234445 8888888874 356888 88876 122221 111 122344432 23333 6777888887
Q ss_pred C-----CCCCCCe-eeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC--eeeeeec-------C----CC
Q psy8285 322 Q-----LDAKRPQ-VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK--EKCHVKT-------D----SQ 382 (507)
Q Consensus 322 ~-----~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~-------~----~~ 382 (507)
. ++..... ..+.-...+. . .+++..++.+. . +.+.+.|..... .+..+.. . ..
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs---~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g 265 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAV---A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECB---S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred cccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEc---C-CEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence 6 2100000 0111112233 3 66665666543 3 789999986543 2222211 0 11
Q ss_pred eEEEEECCCCCeEEEEec-c-C-----CCeEEEEeCCCccEEEEeeccccceeEEEECCCCCE-EEEEe-CCCcEEEEec
Q psy8285 383 VTSILWSEQYRELVTSHG-K-Q-----DCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC-VAAAS-ADETISIWNC 453 (507)
Q Consensus 383 i~~~~~s~~~~~l~~~~g-~-~-----d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~-l~s~~-~dg~i~iw~~ 453 (507)
...+.++|+++.++++.. . . ++.+.++|+.+.+.+..+.... ....++|+|||++ +++.. .++.|.++|+
T Consensus 266 ~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 266 FQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp SSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred ceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 122689999999987422 1 1 2356699999999999887544 5789999999984 56666 5899999999
Q ss_pred CCCCcccceeecCCCcc
Q psy8285 454 FPRDKKRKARQVGSGSS 470 (507)
Q Consensus 454 ~~~~~~~~~~~~~~~~~ 470 (507)
.+.+.+..++.......
T Consensus 345 ~t~kvv~~I~vg~~P~~ 361 (368)
T 1mda_H 345 ASDQDQSSVELDKGPES 361 (368)
T ss_dssp SSCEEEEECCCCSCCCE
T ss_pred CCCcEEEEEECCCCCCE
Confidence 99998877665444333
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.7e-10 Score=113.65 Aligned_cols=279 Identities=12% Similarity=0.009 Sum_probs=185.1
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCC---------ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA---------YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~ 248 (507)
+++++.++.|+-+|..+|+.+-...... ... ....+++ .+..++++ +.|+.|..+|..+++.+..+.
T Consensus 80 vyv~~~~~~v~AlD~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~~a~--~~~~v~v~-~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 80 MYVSASWSVVHAIDTRTGNRIWTYDPQI-DRSTGFKGCCDVVNRGVAL--WKGKVYVG-AWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp EEEECGGGCEEEEETTTTEEEEEECCCC-CGGGGGGSSSCSCCCCCEE--ETTEEEEE-CTTSEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCeEEEEECCCCcEEEEEcCCC-CccccccccccCCCCCceE--ECCEEEEE-cCCCEEEEEECCCCCEEeeec
Confidence 5666678899999999999877666532 110 0112333 35678888 889999999999999988877
Q ss_pred ec-C----ccEE-EEEeeCCEEEEEec------CCeEEEEECCCCCcCceeeecC-------------------------
Q psy8285 249 TH-M----HQVI-AMCWNGNLLSCGTI------GGNILHYDVRTHSDYPTAITRE------------------------- 291 (507)
Q Consensus 249 ~~-~----~~v~-~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~------------------------- 291 (507)
.. . ..+. .....+..+++++. ++.|+.+|..+++..-......
T Consensus 156 ~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~ 235 (677)
T 1kb0_A 156 TFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKW 235 (677)
T ss_dssp TTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCH
T ss_pred CCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCce
Confidence 54 2 1111 11224556666554 6899999999887322211110
Q ss_pred ------CCceEEEEEcCCCCEEEEEe-CC-------------------cEEEEEcCCCCCCCCeeeecC--CC-------
Q psy8285 292 ------GDVVCGLKWSPNGRYLASGS-NN-------------------TVKIWDFRQLDAKRPQVNNQC--HL------- 336 (507)
Q Consensus 292 ------~~~v~~~~~~~~~~~l~~~~-d~-------------------~i~i~d~~~~~~~~~~~~~~~--~~------- 336 (507)
......++++|++..++.+. ++ .|..+|.+++ +.+..+.. |.
T Consensus 236 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG---~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 236 WEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG---KYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC---CEEEEEESSTTCCSCCCCC
T ss_pred eEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC---CEEEEEecCCCcccccccC
Confidence 01113578889888888776 32 4999999988 55544332 21
Q ss_pred CCeeEEEEccCCC--cEEEEEccCCCCeEEEEeCCCCCeeeeeecCC-----------C-e-------------------
Q psy8285 337 SAVKAIAWCPWEP--TLLATGGGICDQTVRLWNSMNGKEKCHVKTDS-----------Q-V------------------- 383 (507)
Q Consensus 337 ~~v~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-----------~-i------------------- 383 (507)
....-+....+|+ .+++.+.. +|.++++|..+|+.+..+.... . +
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~--~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~ 390 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPK--NGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY 390 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCT--TSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTT
T ss_pred CCcEEEecccCCcEeeEEEEECC--CCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcc
Confidence 1122233334663 44555544 9999999999999887654221 0 1
Q ss_pred -----EEEEECCCCCeEEEEecc-----------------------------------------CCCeEEEEeCCCccEE
Q psy8285 384 -----TSILWSEQYRELVTSHGK-----------------------------------------QDCSLKMWEYPRLHLI 417 (507)
Q Consensus 384 -----~~~~~s~~~~~l~~~~g~-----------------------------------------~d~~i~v~d~~~~~~~ 417 (507)
..++++|++..+++.... ..|.|..||+.+++.+
T Consensus 391 G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~ 470 (677)
T 1kb0_A 391 GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA 470 (677)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE
T ss_pred cccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEE
Confidence 146889998888773210 1278999999999998
Q ss_pred EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecC
Q psy8285 418 EELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVG 466 (507)
Q Consensus 418 ~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 466 (507)
..+.. ..++....+..++..++.++.||.+++||..+++.+.......
T Consensus 471 W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 471 WSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp EEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred eecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 88763 4445566677788889999999999999999999988766443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.33 E-value=7.7e-10 Score=105.82 Aligned_cols=275 Identities=12% Similarity=0.022 Sum_probs=185.3
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecC---------------------------------C---CCCCceEEEEEcc---
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYP---------------------------------T---YDNAYISCVAWKP--- 218 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~---------------------------------~---~~~~~v~~~~~~~--- 218 (507)
+.+++..|+++++-+-+++..+.+..- | ...+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 566778999999988877655432210 1 0112233355555
Q ss_pred --CCCeEEEEeCCCCcEEEEeCCCceeEEEEee-cCccEEEEEe----eCCEEEEEe------------------cCCeE
Q psy8285 219 --RTTDLAVTNTCTEYIDLWHEQEERLIQKLRT-HMHQVIAMCW----NGNLLSCGT------------------IGGNI 273 (507)
Q Consensus 219 --~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~----~~~~l~~~~------------------~dg~i 273 (507)
||+++++....++.|.+.|+.+.++...+.- .......+.+ +++++++++ .++.+
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 8899999856677899999999998886542 2244666664 688888884 23578
Q ss_pred EEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CC--------------------------------------c
Q psy8285 274 LHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NN--------------------------------------T 314 (507)
Q Consensus 274 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~--------------------------------------~ 314 (507)
.+.|..+.+. ...+.-.. ....++++|+|+++++.+ +. .
T Consensus 178 tvID~~t~~v-~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 178 TAVDADKWEV-AWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEEETTTTEE-EEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEECCCCeE-EEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 8999988653 33322212 345678999999988887 21 3
Q ss_pred EEEEEcCCCCCCCC-eeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC------------eeeeeecCC
Q psy8285 315 VKIWDFRQLDAKRP-QVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK------------EKCHVKTDS 381 (507)
Q Consensus 315 i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------------~~~~~~~~~ 381 (507)
|.+.|.++... .. +..+. -.....++.++|||+++++++.. +.+|.++|+.+.+ ....+....
T Consensus 256 V~VID~~~~~~-~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~--s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~ 331 (595)
T 1fwx_A 256 VKVVDGRKEAS-SLFTRYIP-IANNPHGCNMAPDKKHLCVAGKL--SPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL 331 (595)
T ss_dssp EEEEECSGGGC-CSSEEEEE-EESSCCCEEECTTSSEEEEECTT--SSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS
T ss_pred EEEEeCcccCC-ceeEEEEe-cCCCceEEEEcCCCCEEEEeCCC--CCeEEEEECcccccccccccCcccceEEEcCCCC
Confidence 56666665100 23 23332 23355689999999999988876 9999999998653 344555556
Q ss_pred CeEEEEECCCCCeEEEEeccCCCeEEEEeCCC----------ccEEEEeeccccce-----eEEEECCCCCEEEEEeC--
Q psy8285 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPR----------LHLIEELKIHQERI-----LSAVLSPDQTCVAAASA-- 444 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~----------~~~~~~~~~~~~~i-----~~~~~s~~~~~l~s~~~-- 444 (507)
....++|+|+| +++++ ...|+.|.+||+.. .+.+..+..|..+- ..+.++|||++|+++..
T Consensus 332 gP~h~aF~~dG-~aY~t-~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~s 409 (595)
T 1fwx_A 332 GPLHTAFDGRG-NAYTS-LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFS 409 (595)
T ss_dssp CEEEEEECTTS-EEEEE-ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCC
T ss_pred CcceEEECCCC-eEEEE-EecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCC
Confidence 78999999999 66655 67899999999876 45677776654432 23456899999998753
Q ss_pred -CCc----------EEEEecCCCCccc
Q psy8285 445 -DET----------ISIWNCFPRDKKR 460 (507)
Q Consensus 445 -dg~----------i~iw~~~~~~~~~ 460 (507)
|.. -.++|+..++...
T Consensus 410 kdr~~~~gp~~~~~~ql~dis~~~m~l 436 (595)
T 1fwx_A 410 KDRFLNVGPLKPENDQLIDISGDKMVL 436 (595)
T ss_dssp TTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred ccccccCCCCCCCcceEEEcCCCcEEE
Confidence 432 2889996555433
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-10 Score=114.90 Aligned_cols=238 Identities=11% Similarity=0.033 Sum_probs=157.0
Q ss_pred cceeeeeeCCCC-EEEEE--cC----CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCC-------
Q psy8285 166 FYTSGLDWGYHD-TLAVA--LD----TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTE------- 231 (507)
Q Consensus 166 ~~i~~~~~s~~~-~~~~~--~~----~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg------- 231 (507)
+.+..++||||+ .++.+ .. ..|++||+.+++.... .+ .......++|+ |++.|+.+ +.+.
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~---~~~k~~~~~Ws-Dg~~l~y~-~~~~~~~~~~~ 202 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PL---KDVKFSGISWL-GNEGFFYS-SYDKPDGSELS 202 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EE---EEEESCCCEEE-TTTEEEEE-ESSCCC-----
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-cc---CCceeccEEEe-CCCEEEEE-EecCccccccc
Confidence 457789999998 55543 12 4799999999986543 22 11123578999 99999988 5553
Q ss_pred ------cEEEEeCCCcee--EEEEe--e-cCccEEEEEe--eCCEEEEEec----CCeEEEEECCCCCcCceeeecCCCc
Q psy8285 232 ------YIDLWHEQEERL--IQKLR--T-HMHQVIAMCW--NGNLLSCGTI----GGNILHYDVRTHSDYPTAITREGDV 294 (507)
Q Consensus 232 ------~i~iwd~~~~~~--~~~~~--~-~~~~v~~~~~--~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~ 294 (507)
.|++|++.+... ...+. . +......+.| |+++|+.... ...|+++|+.++......+..+...
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~ 282 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA 282 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence 499999877542 22222 2 3445677778 7887765443 2489999998765345566666666
Q ss_pred eEEEEEcCCCCEEEEEe--C---CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC--eEEEEe
Q psy8285 295 VCGLKWSPNGRYLASGS--N---NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ--TVRLWN 367 (507)
Q Consensus 295 v~~~~~~~~~~~l~~~~--d---~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~--~i~i~d 367 (507)
.... +++++..|+..+ + +.|..+|+.++.. .....+..|...+. .|+++++.++++... ++ .|++||
T Consensus 283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~--~g~~~l~~~d 356 (693)
T 3iuj_A 283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-AHWRDLIPERQQVL--TVHSGSGYLFAEYMV--DATARVEQFD 356 (693)
T ss_dssp CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCE--EEEEETTEEEEEEEE--TTEEEEEEEC
T ss_pred eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-cccEEEecCCCCEE--EEEEECCEEEEEEEE--CCeeEEEEEE
Confidence 5555 666666655444 2 5788899887521 11344555665554 899999888877653 44 789999
Q ss_pred CCCCCeeeeeec--CCCeEEEEECCCCCeEEEEecc--CCCeEEEEeCCCccE
Q psy8285 368 SMNGKEKCHVKT--DSQVTSILWSEQYRELVTSHGK--QDCSLKMWEYPRLHL 416 (507)
Q Consensus 368 ~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~g~--~d~~i~v~d~~~~~~ 416 (507)
+..+ ....+.. ...+..+.++++++.++....+ .-+.++.||+.+++.
T Consensus 357 ~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 357 YEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp TTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 8744 4444443 3467788889999888774211 237899999987754
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-08 Score=90.66 Aligned_cols=243 Identities=9% Similarity=0.013 Sum_probs=158.6
Q ss_pred EcCCeEEEEECCCCcee-----EEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEE
Q psy8285 182 ALDTSVYTWNTKTNKTQ-----LLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIA 256 (507)
Q Consensus 182 ~~~~~i~iw~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 256 (507)
+..+.|+.+++...... ..... ....+..++|++++..|+.+...++.|..+++........+.........
T Consensus 7 ~~~~~I~~~~~~g~~~~~~~~~~~~~~---~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ 83 (267)
T 1npe_A 7 AQTGKIERLPLERNTMKKTEAKAFLHI---PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEG 83 (267)
T ss_dssp EEEEEEEEEEESSSCBCGGGCEEEEEE---EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEE
T ss_pred EcCCeEEEEEecCcccccccceeeecC---CCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccE
Confidence 33457888888765421 12221 22457899999988778777467789999998765543333333346677
Q ss_pred EEee--CCEEEEE-ecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-C---CcEEEEEcCCCCCCCCe
Q psy8285 257 MCWN--GNLLSCG-TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-N---NTVKIWDFRQLDAKRPQ 329 (507)
Q Consensus 257 ~~~~--~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d---~~i~i~d~~~~~~~~~~ 329 (507)
++++ +..|+.+ ...+.|.+++++... ..............++++|++..|+.+. . +.|..+++... ..
T Consensus 84 ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~----~~ 158 (267)
T 1npe_A 84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT----NR 158 (267)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC----CC
T ss_pred EEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC----Cc
Confidence 8884 4555544 456789999987543 2222222224678999999766655554 2 57888887643 22
Q ss_pred eee-cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEE
Q psy8285 330 VNN-QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKM 408 (507)
Q Consensus 330 ~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v 408 (507)
..+ .........++++|++.+++++..+ .+.|..+|.........+........++.. +..|+++ ....+.|.+
T Consensus 159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~~--~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva-~~~~~~v~~ 233 (267)
T 1npe_A 159 RILAQDNLGLPNGLTFDAFSSQLCWVDAG--THRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYT-DWKTNSVIA 233 (267)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEE-ETTTTEEEE
T ss_pred EEEEECCCCCCcEEEEcCCCCEEEEEECC--CCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEE-ECCCCeEEE
Confidence 222 1233467899999988888888765 789999999765444444433455677654 5566654 456789999
Q ss_pred EeCCCccEEEEeeccc-cceeEEEECCCCC
Q psy8285 409 WEYPRLHLIEELKIHQ-ERILSAVLSPDQT 437 (507)
Q Consensus 409 ~d~~~~~~~~~~~~~~-~~i~~~~~s~~~~ 437 (507)
+|..+++.+..+.... .....+++.|++.
T Consensus 234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 234 MDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EeCCCCCceEEEccccccccceeeecCccC
Confidence 9999999888886433 2467788888764
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-09 Score=102.01 Aligned_cols=266 Identities=9% Similarity=-0.037 Sum_probs=169.0
Q ss_pred CEEEEEcCCeEEEEECCCCceeEEEecCCCC-------CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee
Q psy8285 177 DTLAVALDTSVYTWNTKTNKTQLLVEYPTYD-------NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT 249 (507)
Q Consensus 177 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~ 249 (507)
.+++++.++.|+.+|.++++......... . ...+.+... .++..++++ +.++.|..+|..+++.+.....
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~v~v~-~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAE-KDGWFSKEPALLSGGVT-VSGGHVYIG-SEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC----CCSCCCCCEEEEEE-EETTEEEEE-ETTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCcc-ccccccccCcccccCce-EeCCEEEEE-cCCCEEEEEECCCCCEEEEEeC
Confidence 36666778899999999999876666532 1 223332222 235577777 7899999999999998877664
Q ss_pred cCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCce-----EEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q psy8285 250 HMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVV-----CGLKWSPNGRYLASGS-NNTVKIWDFRQL 323 (507)
Q Consensus 250 ~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~-d~~i~i~d~~~~ 323 (507)
...........+..++.++.++.|..+|..+++.. .......... ...... +..++.+. ++.+..+|.+++
T Consensus 132 ~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~-W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG 208 (376)
T 3q7m_A 132 AGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVK-WTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQG 208 (376)
T ss_dssp SSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEE-EEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTC
T ss_pred CCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEE-EEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCC
Confidence 43322223345778888999999999999887632 2222111110 111222 34566666 689999999887
Q ss_pred CCCCCeeeecCCCCC----------e-eEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCC
Q psy8285 324 DAKRPQVNNQCHLSA----------V-KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQY 392 (507)
Q Consensus 324 ~~~~~~~~~~~~~~~----------v-~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~ 392 (507)
+.+......... + ..... .+..+++.+. ++.+..+|..+++.+...... ....+.. ++
T Consensus 209 ---~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~---~g~l~~~d~~tG~~~w~~~~~-~~~~~~~--~~ 277 (376)
T 3q7m_A 209 ---QMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAY---NGNLTALDLRSGQIMWKRELG-SVNDFIV--DG 277 (376)
T ss_dssp ---CEEEEEECCC-----------CCCCCCEE--ETTEEEEECT---TSCEEEEETTTCCEEEEECCC-CEEEEEE--ET
T ss_pred ---cEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEec---CcEEEEEECCCCcEEeeccCC-CCCCceE--EC
Confidence 444443311100 0 11111 1335555443 899999999999988766543 3344444 35
Q ss_pred CeEEEEeccCCCeEEEEeCCCccEEEEeec-cccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccccee
Q psy8285 393 RELVTSHGKQDCSLKMWEYPRLHLIEELKI-HQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 393 ~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 463 (507)
..+++ ++.++.|..+|..+++.+..... ....+..... .+..|+.++.+|.|+++|..+++......
T Consensus 278 ~~l~~--~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~ 345 (376)
T 3q7m_A 278 NRIYL--VDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQK 345 (376)
T ss_dssp TEEEE--EETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEE--EcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 66766 56789999999999998877652 2222333333 35678889999999999999988766544
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.30 E-value=5.8e-10 Score=101.26 Aligned_cols=223 Identities=12% Similarity=0.116 Sum_probs=144.3
Q ss_pred eeeeeeCCCC--EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 168 TSGLDWGYHD--TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.....|++++ ++... .++.|..|+. +++.... .. +...+..++++++|+.+++. ..++.|.+|+.. ++..
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~-~~---~~~~~~gl~~d~dG~l~v~~-~~~~~v~~~~~~-g~~~ 119 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVL-LD---ATAFTNGNAVDAQQRLVHCE-HGRRAITRSDAD-GQAH 119 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEE-EE---SCSCEEEEEECTTSCEEEEE-TTTTEEEEECTT-SCEE
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEE-eC---CCCccceeeECCCCCEEEEE-CCCCEEEEECCC-CCEE
Confidence 4568899876 44444 6789999998 5554333 22 45678999999999866655 666889999986 5433
Q ss_pred EEEeec----CccEEEEEe--eCCEEEE----Eec-------------CCeEEEEECCCCCcCceeeecCCCceEEEEEc
Q psy8285 245 QKLRTH----MHQVIAMCW--NGNLLSC----GTI-------------GGNILHYDVRTHSDYPTAITREGDVVCGLKWS 301 (507)
Q Consensus 245 ~~~~~~----~~~v~~~~~--~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 301 (507)
...... ...+.++.+ +|++.++ |.. .+.|+.+|..+++ ...+. .......++|+
T Consensus 120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~--~~~~~-~~~~p~gl~~s 196 (305)
T 3dr2_A 120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP--LQRMA-DLDHPNGLAFS 196 (305)
T ss_dssp EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC--CEEEE-EESSEEEEEEC
T ss_pred EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc--EEEEe-cCCCCcceEEc
Confidence 222211 123556777 5777765 321 2467778776554 22222 33456789999
Q ss_pred CCCCEEEEEe-C------CcEEEEEcCCCCCCCCeeee-cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe
Q psy8285 302 PNGRYLASGS-N------NTVKIWDFRQLDAKRPQVNN-QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE 373 (507)
Q Consensus 302 ~~~~~l~~~~-d------~~i~i~d~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 373 (507)
||++.|+.+. . +.|.+|++.... ......+ ....+....++++++|. ++++.. + .|.+|+. .++.
T Consensus 197 pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~---~-gv~~~~~-~g~~ 269 (305)
T 3dr2_A 197 PDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG---T-GVCVFDS-DGQL 269 (305)
T ss_dssp TTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECCS---S-EEEEECT-TSCE
T ss_pred CCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEecC---C-cEEEECC-CCCE
Confidence 9999877765 3 579999987541 0001111 11234456789999995 555432 4 4999997 6777
Q ss_pred eeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEe
Q psy8285 374 KCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWE 410 (507)
Q Consensus 374 ~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d 410 (507)
+..+..+..+.+++|+|+++.|+++ +. +.+..++
T Consensus 270 ~~~~~~~~~~~~~~f~~d~~~L~it--~~-~~l~~~~ 303 (305)
T 3dr2_A 270 LGHIPTPGTASNCTFDQAQQRLFIT--GG-PCLWMLP 303 (305)
T ss_dssp EEEEECSSCCCEEEECTTSCEEEEE--ET-TEEEEEE
T ss_pred EEEEECCCceeEEEEeCCCCEEEEE--cC-CeEEEEE
Confidence 7777766678999999999988883 33 3454444
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.30 E-value=8.7e-10 Score=111.25 Aligned_cols=278 Identities=12% Similarity=0.040 Sum_probs=179.2
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCC--------ce-EEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA--------YI-SCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~--------~v-~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~ 248 (507)
+++++.++.|+.+|..+|+..-...... ... .+ ..+.. .+..++++ +.|+.|..+|..+|+.+....
T Consensus 73 vyv~~~~~~v~AlD~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~--~~g~v~v~-~~dg~l~AlDa~TG~~~W~~~ 148 (689)
T 1yiq_A 73 MYTTGPFSVVYALDARDGRLIWKYDPQS-DRHRAGEACCDAVNRGVAV--WKGKVYVG-VLDGRLEAIDAKTGQRAWSVD 148 (689)
T ss_dssp EEEECGGGCEEEEETTTCCEEEEECCCC-CGGGGGGCTTCSCCCCCEE--ETTEEEEE-CTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEcCCCeEEEEECCCCceeEEEcCCC-CccccccccccCCCCccEE--ECCEEEEE-ccCCEEEEEECCCCCEeeeec
Confidence 6666778899999999999877665432 100 00 11222 35678888 889999999999999987776
Q ss_pred ec--Cc---cEE-EEEeeCCEEEEEe------cCCeEEEEECCCCCcCceeeec--------------------------
Q psy8285 249 TH--MH---QVI-AMCWNGNLLSCGT------IGGNILHYDVRTHSDYPTAITR-------------------------- 290 (507)
Q Consensus 249 ~~--~~---~v~-~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~-------------------------- 290 (507)
.. .. .+. +....+..++++. .+|.|+.||.++++..-.....
T Consensus 149 ~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~ 228 (689)
T 1yiq_A 149 TRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYV 228 (689)
T ss_dssp CCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHH
T ss_pred CcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceee
Confidence 42 11 111 1112344454543 3689999999988732221110
Q ss_pred ----CCCceEEEEEcCCCCEEEEEe-CC-------------------cEEEEEcCCCCCCCCeeeecC--CC-------C
Q psy8285 291 ----EGDVVCGLKWSPNGRYLASGS-NN-------------------TVKIWDFRQLDAKRPQVNNQC--HL-------S 337 (507)
Q Consensus 291 ----~~~~v~~~~~~~~~~~l~~~~-d~-------------------~i~i~d~~~~~~~~~~~~~~~--~~-------~ 337 (507)
.......++++|+..+++.+. ++ .|..+|.+++ +.+..+.. |. .
T Consensus 229 ~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG---~~~W~~~~~~~d~wd~~~~~ 305 (689)
T 1yiq_A 229 EQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG---EYVWHYQTTPGDAWDYTATQ 305 (689)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC---CEEEEEESSTTCCSCCCCCS
T ss_pred ecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC---ceeEeeecCCcccccccCCC
Confidence 001112578889888888877 44 3999999998 55554432 21 1
Q ss_pred CeeEEEEccCCC--cEEEEEccCCCCeEEEEeCCCCCeeeeeecCC----------------------------------
Q psy8285 338 AVKAIAWCPWEP--TLLATGGGICDQTVRLWNSMNGKEKCHVKTDS---------------------------------- 381 (507)
Q Consensus 338 ~v~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---------------------------------- 381 (507)
+........+|. .+++.+.. +|.++++|.++|+.+.......
T Consensus 306 ~~~l~d~~~~G~~~~~v~~~~~--~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p 383 (689)
T 1yiq_A 306 HMILAELPIDGKPRKVLMQAPK--NGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTP 383 (689)
T ss_dssp CEEEEEEEETTEEEEEEEECCT--TSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESS
T ss_pred CcEEEeeccCCcEEEEEEEECC--CCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCC
Confidence 122222223443 24555543 9999999999999874332110
Q ss_pred ------CeEEEEECCCCCeEEEEecc-------------------------------------------CCCeEEEEeCC
Q psy8285 382 ------QVTSILWSEQYRELVTSHGK-------------------------------------------QDCSLKMWEYP 412 (507)
Q Consensus 382 ------~i~~~~~s~~~~~l~~~~g~-------------------------------------------~d~~i~v~d~~ 412 (507)
.-..++++|+...+++.+.. .+|.|+.||+.
T Consensus 384 ~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~ 463 (689)
T 1yiq_A 384 AFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV 463 (689)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT
T ss_pred CcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC
Confidence 01136888888877763110 14789999999
Q ss_pred CccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeec
Q psy8285 413 RLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQV 465 (507)
Q Consensus 413 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 465 (507)
+++.+..+..+. ++..-.+...+.+++.++.||.++.||..+++.+.+.+..
T Consensus 464 tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 464 KQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp TTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 999998887543 3444466677889999999999999999999998776644
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-08 Score=88.74 Aligned_cols=247 Identities=9% Similarity=0.005 Sum_probs=152.6
Q ss_pred CeEEEEeCCCCcEEEEeCCCcee-----EEEEeecCccEEEEEee--CCEEE-EEecCCeEEEEECCCCCcCceeeecCC
Q psy8285 221 TDLAVTNTCTEYIDLWHEQEERL-----IQKLRTHMHQVIAMCWN--GNLLS-CGTIGGNILHYDVRTHSDYPTAITREG 292 (507)
Q Consensus 221 ~~l~~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~v~~~~~~--~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~ 292 (507)
++|+.+ . .+.|+.+++..... ...+......+..++++ ++.|+ +-...+.|..+++.... .........
T Consensus 2 ~~l~~~-~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~ 78 (267)
T 1npe_A 2 THLLFA-Q-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-PTTIIRQDL 78 (267)
T ss_dssp EEEEEE-E-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEEECTTC
T ss_pred cEEEEE-c-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-cEEEEECCC
Confidence 455655 3 45788888765432 11222223456778884 44554 44456899999997654 222222233
Q ss_pred CceEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC
Q psy8285 293 DVVCGLKWSPNGRYLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN 370 (507)
Q Consensus 293 ~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 370 (507)
.....+++++++..++.+. . +.|.++++... ...............++++|++..++++..+...+.|..+++..
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg 155 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT---QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCC---CEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence 5678999999877776666 3 89999998753 22122222224678999999777787776421246888888754
Q ss_pred CCeeeeee-cC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEe-CCCc
Q psy8285 371 GKEKCHVK-TD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAAS-ADET 447 (507)
Q Consensus 371 ~~~~~~~~-~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~dg~ 447 (507)
.. ...+. .. .....++++|++..|+++ ....+.|.++|.........+.. ......++.. +..|+.+. ..+.
T Consensus 156 ~~-~~~~~~~~~~~P~gia~d~~~~~lyv~-d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~ 230 (267)
T 1npe_A 156 TN-RRILAQDNLGLPNGLTFDAFSSQLCWV-DAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNS 230 (267)
T ss_dssp CC-CEEEECTTCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTE
T ss_pred CC-cEEEEECCCCCCcEEEEcCCCCEEEEE-ECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCe
Confidence 33 33332 22 468899999998887775 45678999999876544333332 2223556653 44555444 5689
Q ss_pred EEEEecCCCCcccceeecC--CCcceEEeeccC
Q psy8285 448 ISIWNCFPRDKKRKARQVG--SGSSLEFAILKQ 478 (507)
Q Consensus 448 i~iw~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 478 (507)
|.+++..+++....+.... ....+.+.++.+
T Consensus 231 v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 231 VIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 9999998887776654332 244555555544
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3.1e-09 Score=99.61 Aligned_cols=256 Identities=11% Similarity=0.045 Sum_probs=162.3
Q ss_pred CCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccE
Q psy8285 175 YHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQV 254 (507)
Q Consensus 175 ~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 254 (507)
.+.+++++.++.|+.+|..+++........+ .. ....... +..++++ +.++.|..+|..+++.+..........
T Consensus 103 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-~~--~~~p~~~--~~~v~v~-~~~g~l~~~d~~tG~~~W~~~~~~~~~ 176 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNTSDGTVAWQTKVAG-EA--LSRPVVS--DGLVLIH-TSNGQLQALNEADGAVKWTVNLDMPSL 176 (376)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECSS-CC--CSCCEEE--TTEEEEE-CTTSEEEEEETTTCCEEEEEECCC---
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEEeCCC-ce--EcCCEEE--CCEEEEE-cCCCeEEEEECCCCcEEEEEeCCCCce
Confidence 3447777889999999999999876666532 11 1111222 4477777 789999999999999887766432221
Q ss_pred -----EEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCC------ceEEEEEcC--CCCEEEEEe-CCcEEEEEc
Q psy8285 255 -----IAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGD------VVCGLKWSP--NGRYLASGS-NNTVKIWDF 320 (507)
Q Consensus 255 -----~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~v~~~~~~~--~~~~l~~~~-d~~i~i~d~ 320 (507)
......+..++.++.++.+..+|..+++........... .+..+.-.| .+..++.++ ++.+..+|.
T Consensus 177 ~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~ 256 (376)
T 3q7m_A 177 SLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDL 256 (376)
T ss_dssp --CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEET
T ss_pred eecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEEC
Confidence 222335677888888999999999887632221111100 000000111 234556666 699999999
Q ss_pred CCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec-C-CCeEEEEECCCCCeEEEE
Q psy8285 321 RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT-D-SQVTSILWSEQYRELVTS 398 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~-~~i~~~~~s~~~~~l~~~ 398 (507)
+++ +.+.... ......+... +..+++... ++.+..+|..+++.+..... . ..+..... .+..|++
T Consensus 257 ~tG---~~~w~~~--~~~~~~~~~~--~~~l~~~~~---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v- 323 (376)
T 3q7m_A 257 RSG---QIMWKRE--LGSVNDFIVD--GNRIYLVDQ---NDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVV- 323 (376)
T ss_dssp TTC---CEEEEEC--CCCEEEEEEE--TTEEEEEET---TCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEE-
T ss_pred CCC---cEEeecc--CCCCCCceEE--CCEEEEEcC---CCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEE-
Confidence 887 5444433 2334444443 446666554 89999999999998776652 1 22222222 2566777
Q ss_pred eccCCCeEEEEeCCCccEEEEeeccccceeE-EEECCCCCEEEEEeCCCcEEEEe
Q psy8285 399 HGKQDCSLKMWEYPRLHLIEELKIHQERILS-AVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 399 ~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~-~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
++.+|.|+++|..+++.+.........+.. ... .+..|+.++.+|.|+.|+
T Consensus 324 -~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 324 -GDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp -ECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred -EeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 678999999999999998877653333322 222 245788899999999987
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.25 E-value=8e-10 Score=102.11 Aligned_cols=222 Identities=11% Similarity=0.045 Sum_probs=141.7
Q ss_pred eeeeeeCCCC-EEEEEc------CCeEEEEECCCCceeEEEecCC---CCCCceEEEEEccCCCeEEEEeC---CCCcEE
Q psy8285 168 TSGLDWGYHD-TLAVAL------DTSVYTWNTKTNKTQLLVEYPT---YDNAYISCVAWKPRTTDLAVTNT---CTEYID 234 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~~------~~~i~iw~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~---~dg~i~ 234 (507)
+..+++++++ ++++.. +..|.+||+.+++....+.++. .+...+..+++++++..++++.. .++.|.
T Consensus 69 p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~ 148 (343)
T 2qe8_A 69 VLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALI 148 (343)
T ss_dssp EEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEE
T ss_pred eeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEE
Confidence 4467888877 444442 5799999999998766666531 02345689999987666665534 578999
Q ss_pred EEeCCCceeEEEEeecCccE---EEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe
Q psy8285 235 LWHEQEERLIQKLRTHMHQV---IAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS 311 (507)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~v---~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 311 (507)
+||+.+++..+.+..|.... ..+..++..+.+.+.++.+..|. ..+..++|+||++.|+++.
T Consensus 149 v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~ 213 (343)
T 2qe8_A 149 RVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSP 213 (343)
T ss_dssp EEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEE
T ss_pred EEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee---------------cccceeEeccCCCEEEEEe
Confidence 99999888776665432211 22333666666667777665442 2367899999999888887
Q ss_pred -C-CcEEEEEcCCCCCCCC-----ee--eecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec--C
Q psy8285 312 -N-NTVKIWDFRQLDAKRP-----QV--NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT--D 380 (507)
Q Consensus 312 -d-~~i~i~d~~~~~~~~~-----~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~ 380 (507)
. ..+..++......... .. ...++.+....++++++| .++++..+ ++.|.+||..+++....... .
T Consensus 214 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~--~~~V~~~d~~~G~~~~~~~~~~~ 290 (343)
T 2qe8_A 214 MHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDH-NIYVGDLA--HSAIGVITSADRAYKLLVTDEKL 290 (343)
T ss_dssp SSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEGG--GTEEEEEETTTTEEEEEEECGGG
T ss_pred CCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCC-CEEEEccC--CCeEEEEECCCCCEEEEEECCce
Confidence 4 5666555431100000 00 111234456789999998 56666654 89999999856654333332 2
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEE
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMW 409 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~ 409 (507)
..+..+++.++++++++ ....+.+.+|
T Consensus 291 ~~p~~va~~~~g~l~v~--~~~~~~~~~f 317 (343)
T 2qe8_A 291 SWTDSFNFGSDGYLYFD--CNQLHHSAPL 317 (343)
T ss_dssp SCEEEEEECTTSCEEEE--ECCGGGSGGG
T ss_pred ecCCeeEECCCCcEEEE--eCcccccccc
Confidence 46899999999887777 3333444333
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.5e-10 Score=102.18 Aligned_cols=263 Identities=13% Similarity=0.037 Sum_probs=167.9
Q ss_pred eeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe
Q psy8285 169 SGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 169 ~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~ 248 (507)
.++...+++.+-++.++ |..+|. +++....... .........+. +..+.++ +.++.+..+|.. ++......
T Consensus 63 ~~~~~~~~g~l~v~t~~-l~~~d~-~g~~~~~~~~---~~~~~~~~~~~--~~~l~v~-t~~~~l~~~d~~-g~~~~~~~ 133 (330)
T 3hxj_A 63 CRPSIGKDGTIYFGSDK-VYAINP-DGTEKWRFDT---KKAIVSDFTIF--EDILYVT-SMDGHLYAINTD-GTEKWRFK 133 (330)
T ss_dssp ECCEETTTTEECCSSCE-EEEECC-CGGGGGGSCC--------CCEEEE--TTEEEEE-CTTSEEEEECTT-SCEEEEEE
T ss_pred cceEEecCCcEEEecCc-EEEECC-CCcEEEEEEC---CCCcccCceEE--CCEEEEE-ecCCEEEEEcCC-CCEEEEEc
Confidence 34555556644444444 888886 5554332222 11222223333 4567777 789999999988 77766666
Q ss_pred ecCccEEEEEee-CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCC
Q psy8285 249 THMHQVIAMCWN-GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKR 327 (507)
Q Consensus 249 ~~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~ 327 (507)
.....+.++..+ +..+..++.++.|..+|.. ++ ...........+.++...+++.+++.. +.+..+| .++ +
T Consensus 134 ~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~-~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g---~ 205 (330)
T 3hxj_A 134 TKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GT-EKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDG---T 205 (330)
T ss_dssp CSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SC-EEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTS---C
T ss_pred CCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CC-EeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCC---c
Confidence 555555555554 5557778888999999988 44 333333344556677777788766655 8899999 555 4
Q ss_pred CeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeE
Q psy8285 328 PQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSL 406 (507)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i 406 (507)
...........+.++...+++ .+++... ++.+..+| .+++.+..+... ..+..+...+++. |.+ ++.+|.|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~g-~l~v~t~---~~gl~~~~-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v--~t~~ggl 277 (330)
T 3hxj_A 206 EKWNFYAGYWTVTRPAISEDG-TIYVTSL---DGHLYAIN-PDGTEKWRFKTGKRIESSPVIGNTDT-IYF--GSYDGHL 277 (330)
T ss_dssp EEEEECCSSCCCSCCEECTTS-CEEEEET---TTEEEEEC-TTSCEEEEEECSSCCCSCCEECTTSC-EEE--ECTTCEE
T ss_pred EEEEEccCCcceeceEECCCC-eEEEEcC---CCeEEEEC-CCCCEeEEeeCCCCccccceEcCCCe-EEE--ecCCCCE
Confidence 555555455668888888877 5655443 78888887 456666655544 2334455665665 445 5668889
Q ss_pred EEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 407 KMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 407 ~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
..+|. +++.+..+......+.++...++++ |..++.+|.+++......++
T Consensus 278 ~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~~ 327 (330)
T 3hxj_A 278 YAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHHH 327 (330)
T ss_dssp EEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC-----
T ss_pred EEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccccc
Confidence 99995 7777777665566677888878876 55688999999988765443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.24 E-value=7.4e-09 Score=99.12 Aligned_cols=226 Identities=14% Similarity=0.077 Sum_probs=155.4
Q ss_pred cCCeEEEEECCCCceeEEEecCCCCCCceEEEEE-c-cCCCeEEEEe-----------------CCCCcEEEEeCCCcee
Q psy8285 183 LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAW-K-PRTTDLAVTN-----------------TCTEYIDLWHEQEERL 243 (507)
Q Consensus 183 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~-----------------~~dg~i~iwd~~~~~~ 243 (507)
.++.|.+.|+.+.+..++++++. ......+++ + |+++++++++ ..++.+.+.|..+.+.
T Consensus 110 ~~~rVavIdl~t~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v 187 (595)
T 1fwx_A 110 ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEV 187 (595)
T ss_dssp TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEE
T ss_pred CCCEEEEEECCCceEeeEEeCCC--CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeE
Confidence 57789999999999888777763 456889898 5 9999998882 2345899999999988
Q ss_pred EEEEee-cCccEEEEEeeCCEEEEEecCC--------------------------------------eEEEEECCC--CC
Q psy8285 244 IQKLRT-HMHQVIAMCWNGNLLSCGTIGG--------------------------------------NILHYDVRT--HS 282 (507)
Q Consensus 244 ~~~~~~-~~~~v~~~~~~~~~l~~~~~dg--------------------------------------~i~i~d~~~--~~ 282 (507)
..++.- ....-..++.+++++++.+.+. .|.+.|.++ +.
T Consensus 188 ~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~ 267 (595)
T 1fwx_A 188 AWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASS 267 (595)
T ss_dssp EEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCC
T ss_pred EEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCc
Confidence 887763 2222334444777777766442 367777776 32
Q ss_pred cCceeeecCCCceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCC--------CC-CeeeecCCCCCeeEEEEccCCCcE
Q psy8285 283 DYPTAITREGDVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLDA--------KR-PQVNNQCHLSAVKAIAWCPWEPTL 351 (507)
Q Consensus 283 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~--------~~-~~~~~~~~~~~v~~~~~~~~~~~~ 351 (507)
.....+.. .....++.++|||+++++++ +.+|.++|+.+... .. ..... .-......++|+|+| ++
T Consensus 268 ~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG-~a 344 (595)
T 1fwx_A 268 LFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRG-NA 344 (595)
T ss_dssp SSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTS-EE
T ss_pred eeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCC-eE
Confidence 11222222 23456799999999999888 49999999985310 00 11222 234567899999999 77
Q ss_pred EEEEccCCCCeEEEEeCCC----------CCeeeeeecCCCeEEE------EECCCCCeEEEEeccCCCeE---------
Q psy8285 352 LATGGGICDQTVRLWNSMN----------GKEKCHVKTDSQVTSI------LWSEQYRELVTSHGKQDCSL--------- 406 (507)
Q Consensus 352 ~~~~~~~~d~~i~i~d~~~----------~~~~~~~~~~~~i~~~------~~s~~~~~l~~~~g~~d~~i--------- 406 (507)
+++.. .|++|..||+.. .+.+..+..+...-.. ..+|||++|+++.......+
T Consensus 345 Y~t~~--ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~ 422 (595)
T 1fwx_A 345 YTSLF--LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPE 422 (595)
T ss_dssp EEEET--TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCE
T ss_pred EEEEe--cCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCC
Confidence 77665 499999999877 5566777766444222 45799999999754332233
Q ss_pred --EEEeCCCcc
Q psy8285 407 --KMWEYPRLH 415 (507)
Q Consensus 407 --~v~d~~~~~ 415 (507)
.++|+..++
T Consensus 423 ~~ql~dis~~~ 433 (595)
T 1fwx_A 423 NDQLIDISGDK 433 (595)
T ss_dssp EEEEEECSSSS
T ss_pred cceEEEcCCCc
Confidence 889996544
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.5e-09 Score=97.76 Aligned_cols=234 Identities=9% Similarity=-0.049 Sum_probs=145.0
Q ss_pred CceEEEEEccCCCeEEEEeC-CCCcEEEEeCCCceeEEEEe-------ecCccEEEEEee--CCEEEEEec-----CCeE
Q psy8285 209 AYISCVAWKPRTTDLAVTNT-CTEYIDLWHEQEERLIQKLR-------THMHQVIAMCWN--GNLLSCGTI-----GGNI 273 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~-~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~~--~~~l~~~~~-----dg~i 273 (507)
..+..++++|+|+.+++... .++.++||.+.+++.. .+. .+...+..++++ ++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 57899999999988777511 2343555555455432 221 244678899994 454444433 5789
Q ss_pred EEEECCCCCcCceeeec------CCCceEEEEEcCCCCEE-EEEe----CCcEEEEEcCCCCCCCCeeeecCC-------
Q psy8285 274 LHYDVRTHSDYPTAITR------EGDVVCGLKWSPNGRYL-ASGS----NNTVKIWDFRQLDAKRPQVNNQCH------- 335 (507)
Q Consensus 274 ~i~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l-~~~~----d~~i~i~d~~~~~~~~~~~~~~~~------- 335 (507)
.+||+.+++. ...+.. +...+..+++++++..+ ++.. ++.|.+||+.++ +....+..|
T Consensus 96 ~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g---~~~r~~~~~~~~~~~~ 171 (343)
T 2qe8_A 96 VAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTG---LAARVLQGYPGIAPED 171 (343)
T ss_dssp EEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTC---CEEEECTTCTTTSCCS
T ss_pred EEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCC---CEEEEecCCCcccccc
Confidence 9999987652 222221 22356889999865444 4433 389999998765 222222111
Q ss_pred ----------------------CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC---CCC-----e---eeeeecCCC
Q psy8285 336 ----------------------LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM---NGK-----E---KCHVKTDSQ 382 (507)
Q Consensus 336 ----------------------~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~---~~~-----~---~~~~~~~~~ 382 (507)
...+..++|+|+++.++++... ...+..++.. .+. . +........
T Consensus 172 ~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~ 249 (343)
T 2qe8_A 172 IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH--STSMYRIKSADLSNLQLTDAELGSKIERYSEKPI 249 (343)
T ss_dssp CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS--CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCS
T ss_pred cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC--CCeEEEEEHHHhcCCCCChhhhhcceEecccCCC
Confidence 1236889999999777776652 4466666532 111 0 111112235
Q ss_pred eEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec-cccceeEEEECCCCCEEEEEeCCCcEEEE
Q psy8285 383 VTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI-HQERILSAVLSPDQTCVAAASADETISIW 451 (507)
Q Consensus 383 i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~s~~~dg~i~iw 451 (507)
...++++++|..+++ ...++.|.+||..+++....... +.....+++|.++++++++.+..+.+.+|
T Consensus 250 pdgia~d~~G~l~va--~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 250 CDGISIDKDHNIYVG--DLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp CSCEEECTTCCEEEE--EGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred CceEEECCCCCEEEE--ccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 667999999988877 67789999999856654333322 24458899999999888877755544433
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=5.3e-09 Score=105.29 Aligned_cols=274 Identities=11% Similarity=0.015 Sum_probs=173.7
Q ss_pred CCEEEEEcCCeEEEEECCCCceeEEEecC-CCC-CCceEEEEEccCCCeEEEEeC-----CCCcEEEEeCCCceeEEEEe
Q psy8285 176 HDTLAVALDTSVYTWNTKTNKTQLLVEYP-TYD-NAYISCVAWKPRTTDLAVTNT-----CTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 176 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~l~~~~~-----~dg~i~iwd~~~~~~~~~~~ 248 (507)
+.+++++.++.|+.+|..+|+........ ... ...+.+--.. .+..++++.+ .+|.|+.||..+++.+..+.
T Consensus 129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~ 207 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (677)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEec
Confidence 34677778999999999999987766653 100 0112111111 1345665522 27999999999999988775
Q ss_pred ecCcc--------------------------------EEEEEe--eCCEEEEEecCC-------------------eEEE
Q psy8285 249 THMHQ--------------------------------VIAMCW--NGNLLSCGTIGG-------------------NILH 275 (507)
Q Consensus 249 ~~~~~--------------------------------v~~~~~--~~~~l~~~~~dg-------------------~i~i 275 (507)
..... ...+++ ++..++.+..++ .|..
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~A 287 (677)
T 1kb0_A 208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA 287 (677)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred cCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEE
Confidence 42211 013455 467788777654 4999
Q ss_pred EECCCCCcCceeeec-CC-------CceEEEEEcCCC---CEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCC-------
Q psy8285 276 YDVRTHSDYPTAITR-EG-------DVVCGLKWSPNG---RYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHL------- 336 (507)
Q Consensus 276 ~d~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~---~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~------- 336 (507)
+|.++++..-..... |. .....+....+| +.++.++ +|.++++|.+++ +.+.......
T Consensus 288 lD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG---~~l~~~~~~~~~~~~~~ 364 (677)
T 1kb0_A 288 LDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG---KFISAKNFVPVNWASGY 364 (677)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC---CEEEEEESSCCSSEEEE
T ss_pred EECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC---CEeccccccccCccccc
Confidence 999988733222111 21 122223444477 5677777 599999999988 4443332110
Q ss_pred ----CCe------------------------eEEEEccCCCcEEEEEcc-------------------------------
Q psy8285 337 ----SAV------------------------KAIAWCPWEPTLLATGGG------------------------------- 357 (507)
Q Consensus 337 ----~~v------------------------~~~~~~~~~~~~~~~~~~------------------------------- 357 (507)
.++ ..++++|++..+++....
T Consensus 365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 444 (677)
T 1kb0_A 365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK 444 (677)
T ss_dssp CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence 001 257888987655553320
Q ss_pred ---------CCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecccc-ce
Q psy8285 358 ---------ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQE-RI 427 (507)
Q Consensus 358 ---------~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~-~i 427 (507)
...+.|..||+.+++.+..+.....+....+...+..+++ ++.||.+++||..+++.+.++....+ ..
T Consensus 445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~--g~~dg~l~a~D~~tG~~lw~~~~~~~~~~ 522 (677)
T 1kb0_A 445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQ--GTADGRLVAYHAATGEKLWEAPTGTGVVA 522 (677)
T ss_dssp EECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred ccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEE--ECCCCcEEEEECCCCceeeeeeCCCCccc
Confidence 0127899999999999888877655555566777888888 78899999999999999999875432 22
Q ss_pred eEEEECCCCCEEEE-EeC----------------CCcEEEEecCC
Q psy8285 428 LSAVLSPDQTCVAA-ASA----------------DETISIWNCFP 455 (507)
Q Consensus 428 ~~~~~s~~~~~l~s-~~~----------------dg~i~iw~~~~ 455 (507)
.-+.|.++|+.++. .+. .+.+..|.+..
T Consensus 523 ~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 523 APSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp CCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 34566778875443 222 36777887763
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.7e-09 Score=105.31 Aligned_cols=255 Identities=11% Similarity=0.046 Sum_probs=161.0
Q ss_pred CEEEEEcCCeEEEEECCCCceeEEEecC-CCCC--CceEE-EEEccCCCeEEEEeC-----CCCcEEEEeCCCceeEEEE
Q psy8285 177 DTLAVALDTSVYTWNTKTNKTQLLVEYP-TYDN--AYISC-VAWKPRTTDLAVTNT-----CTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 177 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~-~~~~--~~v~~-~~~~~~~~~l~~~~~-----~dg~i~iwd~~~~~~~~~~ 247 (507)
.+++++.++.|+.+|..+|+........ . .. ..+.+ ... .++ .++++.+ .+|.|+.||..+|+.+..+
T Consensus 123 ~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~-~~~~~~~~~sP~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 123 KVYVGVLDGRLEAIDAKTGQRAWSVDTRAD-HKRSYTITGAPRV-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCSC-TTSCCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred EEEEEccCCEEEEEECCCCCEeeeecCcCC-CCCCccccCCcEE-ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 3666678999999999999987666542 1 10 11111 111 134 4555412 3789999999999988776
Q ss_pred eecC-------------------------------ccEEEEEe--eCCEEEEEecCCe-------------------EEE
Q psy8285 248 RTHM-------------------------------HQVIAMCW--NGNLLSCGTIGGN-------------------ILH 275 (507)
Q Consensus 248 ~~~~-------------------------------~~v~~~~~--~~~~l~~~~~dg~-------------------i~i 275 (507)
.... .....+++ +...++.+..++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 5210 00013455 4678888887763 999
Q ss_pred EECCCCCcCceeeec--CC-------CceEEEEEcCCCC---EEEEEe-CCcEEEEEcCCCCCCCCeeeecC--------
Q psy8285 276 YDVRTHSDYPTAITR--EG-------DVVCGLKWSPNGR---YLASGS-NNTVKIWDFRQLDAKRPQVNNQC-------- 334 (507)
Q Consensus 276 ~d~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~-------- 334 (507)
+|.++++.. -.+.. |. ..........+|+ .++.++ +|.++++|.+++ +.+.....
T Consensus 280 lD~~TG~~~-W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG---~~l~~~~~~~~~w~~~ 355 (689)
T 1yiq_A 280 VNADTGEYV-WHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATG---ELLSAKGIVPQSWTKG 355 (689)
T ss_dssp EETTTCCEE-EEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC---CEEEEEESSCCSSEEE
T ss_pred EEccCCcee-EeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCC---CEeccccccccccccc
Confidence 999998733 22221 21 1222223333565 677777 599999999988 44321110
Q ss_pred --------------------CCC-----------CeeEEEEccCCCcEEEEEcc--------------------------
Q psy8285 335 --------------------HLS-----------AVKAIAWCPWEPTLLATGGG-------------------------- 357 (507)
Q Consensus 335 --------------------~~~-----------~v~~~~~~~~~~~~~~~~~~-------------------------- 357 (507)
... .-..++++|+...+++....
T Consensus 356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (689)
T 1yiq_A 356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR 435 (689)
T ss_dssp EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence 000 01237888887555443210
Q ss_pred ----------------CCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee
Q psy8285 358 ----------------ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK 421 (507)
Q Consensus 358 ----------------~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~ 421 (507)
..++.|..||+.+++.+..+..+.....-.+...+..+++ ++.||.++.||.++++.+.+++
T Consensus 436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~--gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFE--GSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEE--ECCCCcEEEEECCCCccceeee
Confidence 0147899999999999988877655444456667888888 7899999999999999999887
Q ss_pred ccccc-eeEEEECCCCCEEE
Q psy8285 422 IHQER-ILSAVLSPDQTCVA 440 (507)
Q Consensus 422 ~~~~~-i~~~~~s~~~~~l~ 440 (507)
...+. ..-+.|..+|+..+
T Consensus 514 ~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 514 AASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp CSSCCCSCCEEEEETTEEEE
T ss_pred CCCCcccCceEEEECCEEEE
Confidence 54332 23466778887543
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.9e-11 Score=112.71 Aligned_cols=201 Identities=10% Similarity=0.024 Sum_probs=111.5
Q ss_pred CCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCC-Cce
Q psy8285 219 RTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREG-DVV 295 (507)
Q Consensus 219 ~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~v 295 (507)
++..++++ +.||.|+.||..+++.+..+.. ..+.+..+ ++..+++++.|+.|+.||..+++. ......+. ..+
T Consensus 8 ~~~~v~~g-s~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVS-TLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEE-ETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-SEECSCCHHHHH
T ss_pred eCCEEEEE-cCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCcccc
Confidence 46788888 8999999999999999888776 33333323 566777888999999999987763 22222111 011
Q ss_pred E-EEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe
Q psy8285 296 C-GLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE 373 (507)
Q Consensus 296 ~-~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 373 (507)
. +..+. ++..+++++ ++.++.||.+++ +.+..+..+. ...++|++..+++.+. |+.|+.||.++++.
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG---~~~w~~~~~~----~~~~~p~~~~v~~~~~---dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLLTG---EKQQTLSSAF----ADSLSPSTSLLYLGRT---EYTITMYDTKTREL 152 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC-----------------------------EEEEEE---EEEEECCCSSSSSC
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECCCC---cEEEEecCCC----cccccccCCEEEEEec---CCEEEEEECCCCCE
Confidence 0 00111 334566666 699999999988 5555544332 2345666656665544 89999999999998
Q ss_pred eeeeecCCCeEEEEECCCC---CeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCC
Q psy8285 374 KCHVKTDSQVTSILWSEQY---RELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT 437 (507)
Q Consensus 374 ~~~~~~~~~i~~~~~s~~~---~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~ 437 (507)
+..+.... .....+.++. ..+++ ++.+|.|+.||..+++.+.........+....+++++.
T Consensus 153 ~W~~~~~~-~~~~~~~~~~~~~~~v~~--~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 153 RWNATYFD-YAASLPEDDVDYKMSHFV--SNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL 216 (369)
T ss_dssp CCEEEEEE-ECCBCCCCCTTCCCCEEE--EETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred EEeEeccc-ccCccccCCccccceEEE--ECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence 76654321 1223344432 45666 67899999999999999888764332233345556664
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.14 E-value=5e-07 Score=83.17 Aligned_cols=240 Identities=8% Similarity=-0.046 Sum_probs=155.0
Q ss_pred eeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee
Q psy8285 170 GLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT 249 (507)
Q Consensus 170 ~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~ 249 (507)
|.+..++..+..+....|+..++...+...+.. ....+..++|++.+..|+.+....+.|..+++........+..
T Consensus 38 C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~~----~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 38 CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN----NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp EEESSSCCEEEEECBSCEEEECTTSCCEEEEEC----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred ccccccCceeEeecccceEEEeCCCCeeEEeec----CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 344445556666777789999987766554443 3455899999988777777746778999999887654443333
Q ss_pred cCccEEEEEe--e-CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--C-CcEEEEEcCCC
Q psy8285 250 HMHQVIAMCW--N-GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--N-NTVKIWDFRQL 323 (507)
Q Consensus 250 ~~~~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~ 323 (507)
.......+++ . +++.++-...+.|.+.+++... ..............+++.|.+..|+... . +.|..+++...
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~ 192 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 192 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc-eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence 2233344555 3 4455555567889999987643 2223333345678999999777666655 4 67888887653
Q ss_pred CCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccC
Q psy8285 324 DAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQ 402 (507)
Q Consensus 324 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~ 402 (507)
...............++++|++..++.+..+ .+.|..+|+........+... .....+++. .+ .|+.+ ...
T Consensus 193 ---~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~--~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~-~ly~t-d~~ 264 (349)
T 3v64_C 193 ---GRRIIADTHLFWPNGLTIDYAGRRMYWVDAK--HHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWT-DWH 264 (349)
T ss_dssp ---SCEESCCSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TT-EEEEE-ETT
T ss_pred ---CcEEEEECCCCCcceEEEeCCCCEEEEEECC--CCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CC-EEEEe-cCC
Confidence 2222222234457899999988888888765 789999998654433333322 467788883 34 44443 456
Q ss_pred CCeEEEEeCCCccEEEEeec
Q psy8285 403 DCSLKMWEYPRLHLIEELKI 422 (507)
Q Consensus 403 d~~i~v~d~~~~~~~~~~~~ 422 (507)
.+.|..++..+++.+..+..
T Consensus 265 ~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 265 TKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp TTEEEEEETTTCCSCEEEEC
T ss_pred CCeEEEEEccCCCccEEecc
Confidence 78898888767766555543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-07 Score=86.27 Aligned_cols=249 Identities=8% Similarity=-0.051 Sum_probs=159.3
Q ss_pred eeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeec
Q psy8285 171 LDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTH 250 (507)
Q Consensus 171 ~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~ 250 (507)
.+..++.++..+....|+.+++...+...+.. ....+..++|.+.+..|+.+....+.|..+++........+...
T Consensus 82 ~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~~----~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 82 KALGPEPVLLFANRIDIRQVLPHRSEYTLLLN----NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp EECSSCCEEEEECBSCEEEECTTSCCCEEEEC----SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred CCccccceeEeecCccceeeccCCCcEEEEec----CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 33344556667777889999998776655544 34568899999877777776467789999998876544433322
Q ss_pred CccEEEEEe--e-CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCC
Q psy8285 251 MHQVIAMCW--N-GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--N-NTVKIWDFRQLD 324 (507)
Q Consensus 251 ~~~v~~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~~ 324 (507)
......+++ . +.+.++-...+.|.+.++.... ..............+++.|.+..|+.+. . +.|..+++...
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~- 235 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS- 235 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-
Confidence 223334444 3 4445555556788888887543 2233333345678999999777766665 3 67888887653
Q ss_pred CCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCC
Q psy8285 325 AKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQD 403 (507)
Q Consensus 325 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d 403 (507)
...............|+++|++..|+++... .+.|..+|+........+... .....+++. .+ .|+.+ ....
T Consensus 236 --~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~--~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~-~ly~t-d~~~ 308 (386)
T 3v65_B 236 --GRRIIADTHLFWPNGLTIDYAGRRMYWVDAK--HHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWT-DWHT 308 (386)
T ss_dssp --SCEEEECSSCSCEEEEEEEGGGTEEEEEETT--TTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TT-EEEEE-ETTT
T ss_pred --CcEEEEECCCCCeeeEEEeCCCCEEEEEECC--CCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CC-EEEEe-eCCC
Confidence 2222222234457899999988888888765 789999998654433333322 467788883 33 44443 5567
Q ss_pred CeEEEEeCCCccEEEEeeccccceeEEEE
Q psy8285 404 CSLKMWEYPRLHLIEELKIHQERILSAVL 432 (507)
Q Consensus 404 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 432 (507)
+.|..++..+++.+..+.........+++
T Consensus 309 ~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 309 KSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp TEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred CeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 88999997777766666543333344443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.3e-08 Score=85.05 Aligned_cols=195 Identities=13% Similarity=0.055 Sum_probs=137.5
Q ss_pred ceeeeeeCCCC-EEEEEc---CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 167 YTSGLDWGYHD-TLAVAL---DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~---~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
+...++|++++ ++.++. ++.|.++|+.+++......+.. + .....+++. +..|+.+...++.+.++|..+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~-~-~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD-S-YFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT-T-CCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC-C-cceEEEEEe--CCEEEEEEecCCEEEEEECCCCc
Confidence 34578999977 444432 5899999999999888777643 2 223345554 55676665789999999999999
Q ss_pred eEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeec-CC---CceEEEEEcCCCCEEEEEe-CCcEEE
Q psy8285 243 LIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITR-EG---DVVCGLKWSPNGRYLASGS-NNTVKI 317 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~---~~v~~~~~~~~~~~l~~~~-d~~i~i 317 (507)
.+.++......-..+++|++.++++..++.|.++|..+.+.......+ .. ..++.+.|. +++.++... ++.|.+
T Consensus 98 v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~v 176 (266)
T 2iwa_A 98 NIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIAR 176 (266)
T ss_dssp EEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEE
Confidence 998886432333568888887777777899999999887633222221 11 236678888 675444443 499999
Q ss_pred EEcCCCCCCCCeeeecCC-------------CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC
Q psy8285 318 WDFRQLDAKRPQVNNQCH-------------LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG 371 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~ 371 (507)
.|..++ +.+..+.-. ......++|+|+++.+++++.. ...+...++...
T Consensus 177 ID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~--~~~v~~i~l~~~ 238 (266)
T 2iwa_A 177 ISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL--WPKLFEIKLHLV 238 (266)
T ss_dssp EETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT--CSEEEEEEEEEC
T ss_pred EECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC--CCeEEEEEEecc
Confidence 999998 555555321 1356899999999999999875 788888887554
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-08 Score=94.02 Aligned_cols=217 Identities=14% Similarity=0.105 Sum_probs=138.8
Q ss_pred CCC--EEEE-EcCCeEEEEECCCC----ceeEEEe---c--CCCCCCceEEEEEccCCCeEEEEeCCC------CcEEEE
Q psy8285 175 YHD--TLAV-ALDTSVYTWNTKTN----KTQLLVE---Y--PTYDNAYISCVAWKPRTTDLAVTNTCT------EYIDLW 236 (507)
Q Consensus 175 ~~~--~~~~-~~~~~i~iw~~~~~----~~~~~~~---~--~~~~~~~v~~~~~~~~~~~l~~~~~~d------g~i~iw 236 (507)
.++ +++. ..++.|+++|+.+. +..+..+ + +. .......+...|+| .++++ ..+ |.|.++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~-g~s~Ph~~~~~pdG-i~Vs~-~g~~~g~~~g~v~vl 169 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVS-GYSRLHTVHCGPDA-IYISA-LGNEEGEGPGGILML 169 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHH-CEEEEEEEEECSSC-EEEEE-EEETTSCSCCEEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccccc-CCCcccceeECCCe-EEEEc-CCCcCCCCCCeEEEE
Confidence 555 3333 37889999998754 3334432 1 00 11245677889999 55554 333 789999
Q ss_pred eCCCceeEEEEeecCcc---EEEEEe--eCCEEEEEe-------------------cCCeEEEEECCCCCcCceeeecC-
Q psy8285 237 HEQEERLIQKLRTHMHQ---VIAMCW--NGNLLSCGT-------------------IGGNILHYDVRTHSDYPTAITRE- 291 (507)
Q Consensus 237 d~~~~~~~~~~~~~~~~---v~~~~~--~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~~~~~- 291 (507)
|..+++.+..+.....+ -+.+-| +++.+++.. ....|.+||+.+++ ....+...
T Consensus 170 D~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k-~~~tI~vg~ 248 (462)
T 2ece_A 170 DHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK-RIHSLTLGE 248 (462)
T ss_dssp CTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE-EEEEEESCT
T ss_pred ECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc-EeeEEecCC
Confidence 99999999888733222 234545 677787774 36899999999764 33334332
Q ss_pred -CCceEEEEE--cCCCCEEEEEe------C-CcEEEEEcCCCCCCCCeeee--cC----------------CCCCeeEEE
Q psy8285 292 -GDVVCGLKW--SPNGRYLASGS------N-NTVKIWDFRQLDAKRPQVNN--QC----------------HLSAVKAIA 343 (507)
Q Consensus 292 -~~~v~~~~~--~~~~~~l~~~~------d-~~i~i~d~~~~~~~~~~~~~--~~----------------~~~~v~~~~ 343 (507)
......+.| +|+++++++++ . ++|.+|....+. .+....+ .. -......+.
T Consensus 249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~ 327 (462)
T 2ece_A 249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID 327 (462)
T ss_dssp TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence 123455656 99999876654 3 677766554320 0111100 00 024578899
Q ss_pred EccCCCcEEEEEccCCCCeEEEEeCCCC---CeeeeeecCC---------------CeEEEEECCCCCeEEEE
Q psy8285 344 WCPWEPTLLATGGGICDQTVRLWNSMNG---KEKCHVKTDS---------------QVTSILWSEQYRELVTS 398 (507)
Q Consensus 344 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~---------------~i~~~~~s~~~~~l~~~ 398 (507)
++||+++++++..+ .+.|.+||+... +.+..+...+ ....++++|||++|+++
T Consensus 328 lS~DGrfLYVSnrg--~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVa 398 (462)
T 2ece_A 328 ISLDDKFLYLSLWG--IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVT 398 (462)
T ss_dssp ECTTSCEEEEEETT--TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEE
T ss_pred ECCCCCEEEEEeCC--CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEE
Confidence 99999999998876 899999998633 4444444331 36889999999999995
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.1e-11 Score=112.53 Aligned_cols=188 Identities=11% Similarity=0.067 Sum_probs=103.0
Q ss_pred eeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCC
Q psy8285 259 WNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLS 337 (507)
Q Consensus 259 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 337 (507)
.++..+++++.||.|+.||..+++. ...+.. ..+.+..+..+++.+++++ |+.|+.||.+++ +.+..+..+..
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG~~-~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG---~~~w~~~~~~~ 80 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTGSI-KWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNN---EGLTKLPFTIP 80 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTCCE-EEEEEC--CCSCCCC-----CCEEECTTTCCEEEC--------CCSEECSCCHH
T ss_pred eeCCEEEEEcCCCEEEEEECCCCCE-EEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCC---ceeeeeeccCc
Confidence 3688899999999999999998873 333333 3444455566777777766 799999999887 44433332211
Q ss_pred -Cee-EEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc
Q psy8285 338 -AVK-AIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 338 -~v~-~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~ 415 (507)
.+. ...+. .+..+++ ++. ++.++.||..+|+.+..+..+.. ..++|++..+++ ++.++.|+.||.++++
T Consensus 81 ~~~~~sp~~~-~~~~v~~-g~~--dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~--~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 81 ELVQASPCRS-SDGILYM-GKK--QDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYL--GRTEYTITMYDTKTRE 151 (369)
T ss_dssp HHHTTCSCC------CCC-CEE--EEEEEEECCC-------------------------EEE--EEEEEEEECCCSSSSS
T ss_pred cccccCceEe-cCCEEEE-EeC--CCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEE--EecCCEEEEEECCCCC
Confidence 010 01111 2334444 333 89999999999998877765532 345678888888 7789999999999998
Q ss_pred EEEEeeccccceeEEEECCCC---CEEEEEeCCCcEEEEecCCCCccccee
Q psy8285 416 LIEELKIHQERILSAVLSPDQ---TCVAAASADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 416 ~~~~~~~~~~~i~~~~~s~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~ 463 (507)
.+..+..+. .....++++. ..+++++.||.|+.||..+++......
T Consensus 152 ~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 152 LRWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CCCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EEEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 877665322 2333344432 567778999999999999988766554
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-09 Score=100.74 Aligned_cols=258 Identities=12% Similarity=0.024 Sum_probs=164.7
Q ss_pred CCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCcc
Q psy8285 175 YHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQ 253 (507)
Q Consensus 175 ~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 253 (507)
.++ +.+++.++.|..|| .+++....... ....+.++...+++. +.++ +.+ +..+|. +++.+..+......
T Consensus 29 ~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~---~~~~~~~~~~~~~g~-l~v~-t~~--l~~~d~-~g~~~~~~~~~~~~ 99 (330)
T 3hxj_A 29 KNGTIYLGSSNKNLYAIN-TDGSVKWFFKS---GEIIECRPSIGKDGT-IYFG-SDK--VYAINP-DGTEKWRFDTKKAI 99 (330)
T ss_dssp TTSCEECSSTTTTTEEEC-TTSCEEESSCG---GGEEEECCEETTTTE-ECCS-SCE--EEEECC-CGGGGGGSCC----
T ss_pred cCCeEEEEcCCCEEEEEC-CCCcEEEEEec---CCCcccceEEecCCc-EEEe-cCc--EEEECC-CCcEEEEEECCCCc
Confidence 344 55566788899999 77776544333 334567777777664 5555 444 888886 55543332222222
Q ss_pred EEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeec
Q psy8285 254 VIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQ 333 (507)
Q Consensus 254 v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~ 333 (507)
.......+..+..++.++.+..+|.. ++ ...........+.++...+++.+++...++.|..+|.. + +......
T Consensus 100 ~~~~~~~~~~l~v~t~~~~l~~~d~~-g~-~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g---~~~~~~~ 173 (330)
T 3hxj_A 100 VSDFTIFEDILYVTSMDGHLYAINTD-GT-EKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-G---TEKWRFK 173 (330)
T ss_dssp -CCEEEETTEEEEECTTSEEEEECTT-SC-EEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-S---CEEEEEE
T ss_pred ccCceEECCEEEEEecCCEEEEEcCC-CC-EEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-C---CEeEEEe
Confidence 22233347778888889999999988 44 23333334445566677778875554446999999988 5 4555554
Q ss_pred CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 334 CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 334 ~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
.....+.++...+++. +++.. +.+..+| .+++........ ..+.++...++|...+. +.++.|..+| .
T Consensus 174 ~~~~~~~~~~~d~~g~-l~v~t-----~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~---t~~~gl~~~~-~ 242 (330)
T 3hxj_A 174 TNDAITSAASIGKDGT-IYFGS-----DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVT---SLDGHLYAIN-P 242 (330)
T ss_dssp CSSCCCSCCEECTTCC-EEEES-----SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEE---ETTTEEEEEC-T
T ss_pred cCCCceeeeEEcCCCE-EEEEe-----CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEE---cCCCeEEEEC-C
Confidence 4556677788877774 44421 6789999 777776665544 55778888888765554 4578888887 4
Q ss_pred CccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccc
Q psy8285 413 RLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKR 460 (507)
Q Consensus 413 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 460 (507)
+++.+..+......+..+...+++ .|..++.+|.|..+|. +++...
T Consensus 243 ~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~ 288 (330)
T 3hxj_A 243 DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKW 288 (330)
T ss_dssp TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEE
T ss_pred CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEE
Confidence 666666666544445556666666 4666788888999985 444433
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=2.3e-06 Score=88.45 Aligned_cols=271 Identities=11% Similarity=0.067 Sum_probs=172.1
Q ss_pred eeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 168 TSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
|.++...+++ +.+++.++.|..|+..+++........ ....|.++...+++...+.+ .++-+.+||..+++....
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~--~~~~i~~i~~d~~g~lwigt--~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPIL--GTKQIQAILQQSPTRIWVAT--EGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC------CCCEEEEEEEETTEEEEEE--BSSCEEEEETTTTEEEEE
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCC--CCCeeEEEEEcCCCCEEEEE--CCCCeEEEeCCCCeEEEe
Confidence 4456665566 666666667999998877654432211 35678999888887655543 444588999887654433
Q ss_pred Eee-------cCccEEEEEee-CCEEEEEecCCeEEEEECCCCCcCceeee--------cCCCceEEEEEcCCCCEEEEE
Q psy8285 247 LRT-------HMHQVIAMCWN-GNLLSCGTIGGNILHYDVRTHSDYPTAIT--------REGDVVCGLKWSPNGRYLASG 310 (507)
Q Consensus 247 ~~~-------~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~ 310 (507)
... ....|.++..+ ...|..|+.+ -|.+||..+.. ...+. -....|.++...++|.+.+..
T Consensus 251 ~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt 327 (795)
T 4a2l_A 251 LHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDS--FASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGT 327 (795)
T ss_dssp CCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTE--EEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEE
T ss_pred ecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCe--EEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEE
Confidence 221 13568888884 4445556655 58889877653 11111 123569999999998866554
Q ss_pred eCCcEEEEEcCCCCCCCCeeeec-------CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeee-----
Q psy8285 311 SNNTVKIWDFRQLDAKRPQVNNQ-------CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK----- 378 (507)
Q Consensus 311 ~d~~i~i~d~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----- 378 (507)
.++-|..|+.... ....+. -....|.++...++|. +.+... ++-|..||..+++......
T Consensus 328 ~~~Gl~~~~~~~~----~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~---~~Gl~~~~~~~~~~~~~~~~~~~~ 399 (795)
T 4a2l_A 328 YFGGLNYYHPIRN----RFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTN---DGGLNLYNPITQRFTSYTLQEDES 399 (795)
T ss_dssp SSSCEEEECGGGG----SSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEES---SSCEEEECTTTCCEEEECCC----
T ss_pred CCCCeEEeCCCcc----cceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEEC---CCCeEEEcCCCCcEEEEecCCCCc
Confidence 4578889987653 121111 1245689999988874 544332 6679999987765433221
Q ss_pred ----cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee----ccccceeEEEECCCCCEEEEEeCCCcEEE
Q psy8285 379 ----TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK----IHQERILSAVLSPDQTCVAAASADETISI 450 (507)
Q Consensus 379 ----~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~----~~~~~i~~~~~s~~~~~l~s~~~dg~i~i 450 (507)
....|.++...++++.|.+ |+.++-|..||..+++...-.. .+...|.++...++|++.+.. .+ -+.+
T Consensus 400 ~~~l~~~~v~~i~~d~~g~~lWi--gt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~ 475 (795)
T 4a2l_A 400 ARGIGSNNIKAVYVDEKKSLVYI--GTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVR 475 (795)
T ss_dssp --CCSCSCEEEEEEETTTTEEEE--EETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEE
T ss_pred ccCCCCccEEEEEEcCCCCEEEE--EeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeE
Confidence 1246889999888884555 4566779999988765433221 124578999998888866544 44 5888
Q ss_pred EecCCCC
Q psy8285 451 WNCFPRD 457 (507)
Q Consensus 451 w~~~~~~ 457 (507)
|+..+++
T Consensus 476 ~~~~~~~ 482 (795)
T 4a2l_A 476 FNPEQRS 482 (795)
T ss_dssp EETTTTE
T ss_pred EeCCCCe
Confidence 8876543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-07 Score=92.21 Aligned_cols=278 Identities=13% Similarity=0.018 Sum_probs=172.2
Q ss_pred EEEEEc-CCeEEEEEC-CCCceeEEEecCCCCCC--------c-eEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 178 TLAVAL-DTSVYTWNT-KTNKTQLLVEYPTYDNA--------Y-ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 178 ~~~~~~-~~~i~iw~~-~~~~~~~~~~~~~~~~~--------~-v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
+++++. ++.|+-+|. .+|+..-...... ... . ...++. .+..++++ +.|+.+..+|..+++.+..
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~v~v~-~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 65 MYVHSAFPNNTYALNLNDPGKIVWQHKPKQ-DASTKAVMCCDVVDRGLAY--GAGQIVKK-QANGHLLALDAKTGKINWE 140 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCC-CGGGGGGCTTCSCCCCCEE--ETTEEEEE-CTTSEEEEEETTTCCEEEE
T ss_pred EEEEeCCCCEEEEEeCCCCccEEEEEcCCC-CccccccccccccccccEE--ECCEEEEE-eCCCEEEEEECCCCCEEEE
Confidence 555566 789999999 8999876665432 110 0 011222 25577777 8899999999999998877
Q ss_pred EeecCc----cEE-EEEeeCCEEEEEec------CCeEEEEECCCCCcCceeeecCC-----------------------
Q psy8285 247 LRTHMH----QVI-AMCWNGNLLSCGTI------GGNILHYDVRTHSDYPTAITREG----------------------- 292 (507)
Q Consensus 247 ~~~~~~----~v~-~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~----------------------- 292 (507)
...... .+. .....+..+++++. ++.|+.+|.++++..-.......
T Consensus 141 ~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g 220 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG 220 (571)
T ss_dssp EECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred ecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccc
Confidence 653220 111 11123455666655 78999999998873221111100
Q ss_pred -------------C-ceEEEEEcCCCCEEEEEe-C----------------CcEEEEEcCCCCCCCCeeeecC--C----
Q psy8285 293 -------------D-VVCGLKWSPNGRYLASGS-N----------------NTVKIWDFRQLDAKRPQVNNQC--H---- 335 (507)
Q Consensus 293 -------------~-~v~~~~~~~~~~~l~~~~-d----------------~~i~i~d~~~~~~~~~~~~~~~--~---- 335 (507)
. ....+++.++...++.+. + +.|..+|.+++ +.+..+.. |
T Consensus 221 ~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG---~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG---MAKWGYQKTPHDEWD 297 (571)
T ss_dssp HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC---CEEEEEESSTTCSSC
T ss_pred cccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCC---cEEEEecCCCCcccc
Confidence 0 001356667666666554 2 25889999887 54444432 1
Q ss_pred ----CCCeeEEEEccCCC--cEEEEEccCCCCeEEEEeCCCCCeeeeeecCC--------------Ce------------
Q psy8285 336 ----LSAVKAIAWCPWEP--TLLATGGGICDQTVRLWNSMNGKEKCHVKTDS--------------QV------------ 383 (507)
Q Consensus 336 ----~~~v~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--------------~i------------ 383 (507)
..++ -+...++|+ .+++.+.. +|.++++|..+++.+....... ++
T Consensus 298 ~~~~~~p~-l~~~~~~G~~~~~v~~~~~--~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~ 374 (571)
T 2ad6_A 298 FAGVNQMV-LTDQPVNGKMTPLLSHIDR--NGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHK 374 (571)
T ss_dssp CCCCCCCE-EEEEEETTEEEEEEEEECT--TSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCC
T ss_pred cccCCCCE-EEecccCCcEEEEEEEeCC--CcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCC
Confidence 1122 122224564 35555554 8999999999999877654321 01
Q ss_pred --------------EEEEECCCCCeEEEEec-----------------------------------cCCCeEEEEeCCCc
Q psy8285 384 --------------TSILWSEQYRELVTSHG-----------------------------------KQDCSLKMWEYPRL 414 (507)
Q Consensus 384 --------------~~~~~s~~~~~l~~~~g-----------------------------------~~d~~i~v~d~~~~ 414 (507)
..++++|+...+++.+. ..+|.|..||..++
T Consensus 375 ~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG 454 (571)
T 2ad6_A 375 GTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTG 454 (571)
T ss_dssp EEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTC
T ss_pred ceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCC
Confidence 23577888777776321 13578999999999
Q ss_pred cEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecC
Q psy8285 415 HLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVG 466 (507)
Q Consensus 415 ~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 466 (507)
+.+.++... ..+....+...+..++.++.||.|+.||..+++.+...+...
T Consensus 455 ~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 455 KAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 998887642 233333333356678889999999999999999887766443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.7e-07 Score=84.28 Aligned_cols=235 Identities=8% Similarity=-0.039 Sum_probs=149.8
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee--------------------cCccEEEEEee--CCEEEE
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT--------------------HMHQVIAMCWN--GNLLSC 266 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~--------------------~~~~v~~~~~~--~~~l~~ 266 (507)
....+++|.++++.++++ ..++.|..||..+++.. .+.. ....+..++++ +..|+.
T Consensus 19 ~~p~~i~~d~~g~~l~v~-~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTS-VQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp SCCCCEECCTTCSSEEEE-CTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred CCceEEEEcCCCCEEEEE-cCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 345778899998878887 78999999998765433 2221 01246788885 466777
Q ss_pred EecCCeEEEEECCCCCcCceeeec-----CCCceEEEEEcC-CCCEEEEEeC------------------CcEEEEEcCC
Q psy8285 267 GTIGGNILHYDVRTHSDYPTAITR-----EGDVVCGLKWSP-NGRYLASGSN------------------NTVKIWDFRQ 322 (507)
Q Consensus 267 ~~~dg~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~d------------------~~i~i~d~~~ 322 (507)
+...+.|..+|..++. ...+.. .......+++.+ +|++.++... +.|..+|..+
T Consensus 97 ~d~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 97 VDCYYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EETTTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EECCCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 7666668888876543 112211 113467899999 9987776432 5688888765
Q ss_pred CCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC--eeeee-ecCCCeEEEEECCCCCeEEEEe
Q psy8285 323 LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK--EKCHV-KTDSQVTSILWSEQYRELVTSH 399 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~-~~~~~i~~~~~s~~~~~l~~~~ 399 (507)
+ + +..+.........++++|+++.++++... .+.|..|++.... ....+ ...+ ...+++.++|++.++..
T Consensus 175 ~---~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~--~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~ 247 (322)
T 2fp8_A 175 K---E-TTLLLKELHVPGGAEVSADSSFVLVAEFL--SHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSS 247 (322)
T ss_dssp T---E-EEEEEEEESCCCEEEECTTSSEEEEEEGG--GTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEE
T ss_pred C---E-EEEeccCCccCcceEECCCCCEEEEEeCC--CCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEec
Confidence 4 2 22221122345689999999777777654 7899999987532 11111 2223 78899999998766632
Q ss_pred c--------cCCCeEEEEeCCCccEEEEeeccc----cceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 400 G--------KQDCSLKMWEYPRLHLIEELKIHQ----ERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 400 g--------~~d~~i~v~d~~~~~~~~~~~~~~----~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
+ ...+.|..+|. .++.+..+.... ..++.+.+ .+++++++....+.|..+++...
T Consensus 248 ~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 248 EELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred CcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 1 11467888886 477776665432 34666766 45666666667788999987643
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-07 Score=81.15 Aligned_cols=192 Identities=11% Similarity=0.078 Sum_probs=134.6
Q ss_pred ceEEEEEccCCCeEEEEeCC--CCcEEEEeCCCceeEEEEeecC-ccEEEEEeeCCEEEEEe-cCCeEEEEECCCCCcCc
Q psy8285 210 YISCVAWKPRTTDLAVTNTC--TEYIDLWHEQEERLIQKLRTHM-HQVIAMCWNGNLLSCGT-IGGNILHYDVRTHSDYP 285 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~--dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~ 285 (507)
....+.|++++ .|+.+.+. ++.|+++|+.+++.+..+.-.. .....++++++.|..+. .++.+.++|..+.+ ..
T Consensus 22 f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~-v~ 99 (266)
T 2iwa_A 22 FTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLS-NI 99 (266)
T ss_dssp CEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTE-EE
T ss_pred CcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCc-EE
Confidence 46899999986 55554233 6799999999999988876322 23345777666555554 57899999999876 33
Q ss_pred eeeecC-CCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCC-----CCCeeEEEEccCCCcEEEEEccC
Q psy8285 286 TAITRE-GDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCH-----LSAVKAIAWCPWEPTLLATGGGI 358 (507)
Q Consensus 286 ~~~~~~-~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~ 358 (507)
..+... .. ...+++|++.++++. ++.|.++|..+. +....+.-. -..++.+.|. ++ .+++....
T Consensus 100 ~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~---~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~- 170 (266)
T 2iwa_A 100 KNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTF---KLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQ- 170 (266)
T ss_dssp EEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETT-
T ss_pred EEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCC---cEEEEEEECCCCcccccceeEEEE-CC-EEEEecCC-
Confidence 444322 22 234566887777666 499999999886 444444321 1236678888 56 67766543
Q ss_pred CCCeEEEEeCCCCCeeeeeecC--------------CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc
Q psy8285 359 CDQTVRLWNSMNGKEKCHVKTD--------------SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 359 ~d~~i~i~d~~~~~~~~~~~~~--------------~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~ 414 (507)
++.|.+.|..+++.+..+... .....++|+|+++.++++ +...+.+.+.++...
T Consensus 171 -~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT-gk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 171 -TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT-GKLWPKLFEIKLHLV 238 (266)
T ss_dssp -SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE-ETTCSEEEEEEEEEC
T ss_pred -CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE-CCCCCeEEEEEEecc
Confidence 789999999999998887642 256899999999988886 667788888887543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-07 Score=94.45 Aligned_cols=278 Identities=12% Similarity=0.016 Sum_probs=176.3
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCC--------ce-EEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA--------YI-SCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~--------~v-~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~ 248 (507)
+++++.++.|+-+|..+|+..-...... ... .+ ..++. .+..++++ +.|+.|..+|..+++.+....
T Consensus 69 vyv~~~~~~v~AlD~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~v~v~-~~dg~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 69 IYTSMSWSRVIAVDAASGKELWRYDPEV-AKVKARTSCCDAVNRGVAL--WGDKVYVG-TLDGRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp EEEEEGGGEEEEEETTTCCEEEEECCCC-CGGGGGGCTTCSCCCCCEE--EBTEEEEE-CTTSEEEEEETTTCCEEEEEE
T ss_pred EEEECCCCeEEEEECCCChhceEECCCC-CccccccccccCCccceEE--ECCEEEEE-cCCCEEEEEECCCCCEeeeec
Confidence 6667788999999999999876665432 100 00 11222 24577777 889999999999999988776
Q ss_pred ecC----ccEE-EEEeeCCEEEEEec------CCeEEEEECCCCCcCceeeec--C------------------------
Q psy8285 249 THM----HQVI-AMCWNGNLLSCGTI------GGNILHYDVRTHSDYPTAITR--E------------------------ 291 (507)
Q Consensus 249 ~~~----~~v~-~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~--~------------------------ 291 (507)
... ..+. .....+..++++.. +|.|+.+|.++++..-..... .
T Consensus 145 ~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~ 224 (668)
T 1kv9_A 145 TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWK 224 (668)
T ss_dssp CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHH
T ss_pred cCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceee
Confidence 421 1111 11123445555543 589999999988732221110 0
Q ss_pred ----CCceEEEEEcCCCCEEEEEe-CC-------------------cEEEEEcCCCCCCCCeeeecC--CC-------CC
Q psy8285 292 ----GDVVCGLKWSPNGRYLASGS-NN-------------------TVKIWDFRQLDAKRPQVNNQC--HL-------SA 338 (507)
Q Consensus 292 ----~~~v~~~~~~~~~~~l~~~~-d~-------------------~i~i~d~~~~~~~~~~~~~~~--~~-------~~ 338 (507)
......+++.|+...++.+. ++ .|..+|.+++ +.+..+.. |. .+
T Consensus 225 ~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG---~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 225 LGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG---KLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC---CEEEEEESSTTCCSCCCCCSC
T ss_pred eCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC---ceeeEeecCCCccccccCCCC
Confidence 01112468888888887776 44 3899999988 55544432 21 22
Q ss_pred eeEEEEccCCC--cEEEEEccCCCCeEEEEeCCCCCeeeeeecCC-------------C---------------------
Q psy8285 339 VKAIAWCPWEP--TLLATGGGICDQTVRLWNSMNGKEKCHVKTDS-------------Q--------------------- 382 (507)
Q Consensus 339 v~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------~--------------------- 382 (507)
.....+..+++ .+++.+.. +|.++++|..+|+.+....... +
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~--~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G 379 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPK--NGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFG 379 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCT--TSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTC
T ss_pred cEEEEeccCCcEEEEEEEECC--CCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcc
Confidence 22223333553 24555544 9999999999999874332111 0
Q ss_pred ---eEEEEECCCCCeEEEEe----------------------------------ccCCCeEEEEeCCCccEEEEeecccc
Q psy8285 383 ---VTSILWSEQYRELVTSH----------------------------------GKQDCSLKMWEYPRLHLIEELKIHQE 425 (507)
Q Consensus 383 ---i~~~~~s~~~~~l~~~~----------------------------------g~~d~~i~v~d~~~~~~~~~~~~~~~ 425 (507)
-..++++|+...+++.. ...+|.|..||..+++.+.+...+.
T Consensus 380 ~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~- 458 (668)
T 1kv9_A 380 AHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT- 458 (668)
T ss_dssp SSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-
T ss_pred ccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-
Confidence 01256777766655410 1234889999999999988876433
Q ss_pred ceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeec
Q psy8285 426 RILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQV 465 (507)
Q Consensus 426 ~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 465 (507)
+.....+...+.+++.++.|+.++.||..+++.+...+..
T Consensus 459 ~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 459 HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred CCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 3344445557788999999999999999999988776544
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=99.00 E-value=4.8e-06 Score=78.11 Aligned_cols=243 Identities=7% Similarity=-0.028 Sum_probs=157.4
Q ss_pred CCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc----eeEEEEeecC
Q psy8285 176 HDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE----RLIQKLRTHM 251 (507)
Q Consensus 176 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~----~~~~~~~~~~ 251 (507)
..++..+....|+..++.......+.. ....+..++|++.+..|+.+....+.|+.+++... .....+....
T Consensus 83 ~~~ll~~~~~~I~~i~l~~~~~~~~~~----~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 83 IAYLFFTNRHEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp SCEEEEEETTEEEEECTTSCSCEEEEC----SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred cceeEEeccceeEEEccCCcceeEecc----ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 346666778899999998776655543 45678999999987777777456788999998752 2233333333
Q ss_pred ccEEEEEee---CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCCC
Q psy8285 252 HQVIAMCWN---GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--N-NTVKIWDFRQLDA 325 (507)
Q Consensus 252 ~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~~~ 325 (507)
.....++++ +++.++-...+.|.+.+++... ..............+++.|.+..|+... + +.|...++...
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-- 235 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-- 235 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS-EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC--
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCc-eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC--
Confidence 455566663 4455555567889999987653 2233333445578999999776666554 3 78888888753
Q ss_pred CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECCCCCeEEEEeccC
Q psy8285 326 KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSEQYRELVTSHGKQ 402 (507)
Q Consensus 326 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~g~~ 402 (507)
.........-.....|+++|++..|+.+... .+.|..+|+............ .....+++ ++..|+.+ ...
T Consensus 236 -~~~~~~~~~l~~P~glavd~~~~~lY~aD~~--~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywt-d~~ 309 (400)
T 3p5b_L 236 -DIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWT-DII 309 (400)
T ss_dssp -SCEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEE-ESS
T ss_pred -ccEEEEECCCCceEEEEEEeCCCEEEEEECC--CCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEe-cCC
Confidence 2222223334567899999988888888765 789999998655443333321 34667777 34445443 456
Q ss_pred CCeEEEEeCCCccEEEEeeccccceeEEE
Q psy8285 403 DCSLKMWEYPRLHLIEELKIHQERILSAV 431 (507)
Q Consensus 403 d~~i~v~d~~~~~~~~~~~~~~~~i~~~~ 431 (507)
.+.|..+|..+++.+..+........++.
T Consensus 310 ~~~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 310 NEAIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp SCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred CCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence 78899999878877666654333344443
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=4.2e-07 Score=89.40 Aligned_cols=279 Identities=11% Similarity=0.011 Sum_probs=170.1
Q ss_pred EEEEEc-CCeEEEEEC-CCCceeEEEecCCCCCC---------ceEEEEEccCCCe----EEEEeCCCCcEEEEeCCCce
Q psy8285 178 TLAVAL-DTSVYTWNT-KTNKTQLLVEYPTYDNA---------YISCVAWKPRTTD----LAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 178 ~~~~~~-~~~i~iw~~-~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~----l~~~~~~dg~i~iwd~~~~~ 242 (507)
+++++. ++.|+-+|. .+|+.+-...... ... ....++++|.+.. ++++ +.|+.+.-+|..+|+
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~-~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~-t~dg~l~AlDa~TG~ 142 (599)
T 1w6s_A 65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQ-NPAARAVACCDLVNRGLAYWPGDGKTPALILKT-QLDGNVAALNAETGE 142 (599)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCC-CGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEE-CTTSEEEEEETTTCC
T ss_pred EEEEeCCCCEEEEEeCCCCCcEEEEECCCC-CccccccccccccccceEEEecCCcceeEEEEE-cCCCEEEEEECCCCC
Confidence 555566 789999999 8998876665432 110 0123455444445 7777 889999999999999
Q ss_pred eEEEEeecCc----cEE-EEEeeCCEEEEEe------cCCeEEEEECCCCCcCceeeecCCC------------------
Q psy8285 243 LIQKLRTHMH----QVI-AMCWNGNLLSCGT------IGGNILHYDVRTHSDYPTAITREGD------------------ 293 (507)
Q Consensus 243 ~~~~~~~~~~----~v~-~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~------------------ 293 (507)
.+........ .+. .....+..+++++ .++.|+.+|.++++..-........
T Consensus 143 ~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~ 222 (599)
T 1w6s_A 143 TVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQ 222 (599)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccc
Confidence 8877653220 111 1112344555555 3789999999988732221111100
Q ss_pred ------------------ce-EEEEEcCCCCEEEEEe-CC----------------cEEEEEcCCCCCCCCeeeecCCC-
Q psy8285 294 ------------------VV-CGLKWSPNGRYLASGS-NN----------------TVKIWDFRQLDAKRPQVNNQCHL- 336 (507)
Q Consensus 294 ------------------~v-~~~~~~~~~~~l~~~~-d~----------------~i~i~d~~~~~~~~~~~~~~~~~- 336 (507)
.+ ..+++.++..+++.+. +. .|..+|.+++ +..-.++...
T Consensus 223 ~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG---~~~W~~q~~~~ 299 (599)
T 1w6s_A 223 KGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG---EAKFGYQKTPH 299 (599)
T ss_dssp TTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC---CEEEEEESSTT
T ss_pred cccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCC---ceeeEeecCCC
Confidence 00 1345667777777665 32 7888999887 5544443221
Q ss_pred ---------CCeeEEEEc-cCCC--cEEEEEccCCCCeEEEEeCCCCCeeeeeecCC--------------C--------
Q psy8285 337 ---------SAVKAIAWC-PWEP--TLLATGGGICDQTVRLWNSMNGKEKCHVKTDS--------------Q-------- 382 (507)
Q Consensus 337 ---------~~v~~~~~~-~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--------------~-------- 382 (507)
.++. +... .+|+ .+++.+.. +|.++++|.++|+.+....... +
T Consensus 300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~--~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~ 376 (599)
T 1w6s_A 300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDR--NGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGT 376 (599)
T ss_dssp CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECT--TSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCC
T ss_pred ccccccCCCccEE-EeccccCCcEEEEEEEECC--CcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCC
Confidence 1121 2222 3553 35555544 9999999999999876554211 0
Q ss_pred ------------------eEEEEECCCCCeEEEEe-------------------------------cc------CCCeEE
Q psy8285 383 ------------------VTSILWSEQYRELVTSH-------------------------------GK------QDCSLK 407 (507)
Q Consensus 383 ------------------i~~~~~s~~~~~l~~~~-------------------------------g~------~d~~i~ 407 (507)
-..++++|+...+++.. .+ ..|.|.
T Consensus 377 ~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~ 456 (599)
T 1w6s_A 377 RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIK 456 (599)
T ss_dssp CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEE
T ss_pred CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEE
Confidence 12356677666555420 01 347899
Q ss_pred EEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeec
Q psy8285 408 MWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQV 465 (507)
Q Consensus 408 v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 465 (507)
.||+.+++.+.+.... .+...-.....+.+++.++.|+.++.||..+++.+.+.+..
T Consensus 457 A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~ 513 (599)
T 1w6s_A 457 AYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIP 513 (599)
T ss_dssp EECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCC
Confidence 9999999988877532 22222122235677888999999999999999988776543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=4.2e-06 Score=75.89 Aligned_cols=230 Identities=7% Similarity=-0.023 Sum_probs=146.7
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC----ceeEEEEeecCcc
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE----ERLIQKLRTHMHQ 253 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~ 253 (507)
+|..+....|+..++.+.+...+.. ....+..++|++.+..|+.+...++.|..+++.. ......+......
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~----~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 78 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 78 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC----SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred EEEEECCCeEEEEECCCcceEehhc----CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCC
Confidence 4555667789999998877655443 3456889999998777777746678999999876 2222223222223
Q ss_pred EEEEEee--CC-EEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCCCCC
Q psy8285 254 VIAMCWN--GN-LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--N-NTVKIWDFRQLDAKR 327 (507)
Q Consensus 254 v~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~~~~~ 327 (507)
...++++ +. +.++-...+.|.++++.... ..............+++.|.+..|+.+. . +.|...++...
T Consensus 79 p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~---- 153 (316)
T 1ijq_A 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---- 153 (316)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----
T ss_pred cCEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC----
Confidence 4555553 44 44555667899999987543 2222333345678999999766655554 3 67888887642
Q ss_pred Ceeee-cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec---CCCeEEEEECCCCCeEEEEeccCC
Q psy8285 328 PQVNN-QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT---DSQVTSILWSEQYRELVTSHGKQD 403 (507)
Q Consensus 328 ~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---~~~i~~~~~s~~~~~l~~~~g~~d 403 (507)
....+ ...-.....++++|++..++.+... .+.|..+|+........... ......+++. +..++.+ ....
T Consensus 154 ~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~--~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~-d~~~ 228 (316)
T 1ijq_A 154 DIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT-DIIN 228 (316)
T ss_dssp CEEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEE-ETTT
T ss_pred CeEEEEECCCCCceEEEEeccCCEEEEEECC--CCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEE-ECCC
Confidence 22222 2234567899999988888888765 78999999875433222222 1356778884 3444443 4567
Q ss_pred CeEEEEeCCCccEEEEee
Q psy8285 404 CSLKMWEYPRLHLIEELK 421 (507)
Q Consensus 404 ~~i~v~d~~~~~~~~~~~ 421 (507)
+.|..++..+++.+..+.
T Consensus 229 ~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 229 EAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp TEEEEEETTTCCCCEEEE
T ss_pred CeEEEEeCCCCcceEEEe
Confidence 889999987776655554
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.8e-07 Score=78.83 Aligned_cols=188 Identities=10% Similarity=0.143 Sum_probs=125.4
Q ss_pred eeEEEEeecCcc--EEEEEe-eCCEEEEEecCC--eEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--CCc
Q psy8285 242 RLIQKLRTHMHQ--VIAMCW-NGNLLSCGTIGG--NILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--NNT 314 (507)
Q Consensus 242 ~~~~~~~~~~~~--v~~~~~-~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~ 314 (507)
+.+.++. |... ...+.| ++.++.+.+.+| .|+++|+.+++. .....-. .........+++..|.... ++.
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv-~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~ 108 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKT-LQQIELG-KRYFGEGISDWKDKIVGLTWKNGL 108 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCE-EEEEECC-TTCCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEEec-CCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcE-EEEEecC-CccceeEEEEeCCEEEEEEeeCCE
Confidence 3445553 4443 367778 455556666665 899999999873 3333322 2332222333455666666 599
Q ss_pred EEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC------CCeEEEEE
Q psy8285 315 VKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD------SQVTSILW 388 (507)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------~~i~~~~~ 388 (507)
+.+||..+. +.+.++.... ....+++++..++++.+ ++.|.++|..+.+.+..+... ..++.+.|
T Consensus 109 v~v~D~~t~---~~~~ti~~~~---eG~glt~dg~~L~~SdG---s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~ 179 (262)
T 3nol_A 109 GFVWNIRNL---RQVRSFNYDG---EGWGLTHNDQYLIMSDG---TPVLRFLDPESLTPVRTITVTAHGEELPELNELEW 179 (262)
T ss_dssp EEEEETTTC---CEEEEEECSS---CCCCEEECSSCEEECCS---SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEE
T ss_pred EEEEECccC---cEEEEEECCC---CceEEecCCCEEEEECC---CCeEEEEcCCCCeEEEEEEeccCCccccccceeEE
Confidence 999999987 6777766432 22334467777888764 789999999999988877642 33556777
Q ss_pred CCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc------------ccceeEEEECCCCCEEEEEeC
Q psy8285 389 SEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH------------QERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 389 s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~------------~~~i~~~~~s~~~~~l~s~~~ 444 (507)
. +|+ |.+. ...++.|.+.|..+++.+..+... ....+.|+|+|+++.|+..+.
T Consensus 180 ~-~G~-lyan-~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 180 V-DGE-IFAN-VWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp E-TTE-EEEE-ETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred E-CCE-EEEE-EccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 6 665 4442 456789999999999998877532 124688999999887777664
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-07 Score=80.11 Aligned_cols=181 Identities=15% Similarity=0.125 Sum_probs=124.3
Q ss_pred cceeeeeeCCCCEE-EEEcCC--eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 166 FYTSGLDWGYHDTL-AVALDT--SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 166 ~~i~~~~~s~~~~~-~~~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
-+...+.|+.+.++ +.+.+| .|+.+|+++++......+.. ........++++.|......++.+.+||..+.+
T Consensus 43 ~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~----~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 43 AFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK----RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp CEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT----TCCEEEEEEETTEEEEEESSSSEEEEEETTTCC
T ss_pred cccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCC----ccceeEEEEeCCEEEEEEeeCCEEEEEECccCc
Confidence 35667888843333 445554 89999999999988877642 333322333455666664779999999999999
Q ss_pred eEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeec--CC---CceEEEEEcCCCCEEEEEe-CCcEE
Q psy8285 243 LIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITR--EG---DVVCGLKWSPNGRYLASGS-NNTVK 316 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~-d~~i~ 316 (507)
.+.++.... .-+.++++++.|+.+..++.|.++|..+.+. ...+.- .. ..++.+.|. +|+..+..- ++.|.
T Consensus 119 ~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v-~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~ 195 (262)
T 3nol_A 119 QVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPESLTP-VRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIV 195 (262)
T ss_dssp EEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTTTCSE-EEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCCCCeE-EEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEE
Confidence 999988533 3357778888777777788899999998763 222221 12 334567776 676554443 48999
Q ss_pred EEEcCCCCCCCCeeeecC------------CCCCeeEEEEccCCCcEEEEEc
Q psy8285 317 IWDFRQLDAKRPQVNNQC------------HLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
+.|.+++ +.+..+.. ...-.+.|+|+|+++.+++++-
T Consensus 196 vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 196 RIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 9999988 44444332 1235689999999988888874
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.7e-07 Score=77.51 Aligned_cols=182 Identities=16% Similarity=0.073 Sum_probs=125.9
Q ss_pred ccceeeeeeCCCCEEEEE-cC--CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc
Q psy8285 165 DFYTSGLDWGYHDTLAVA-LD--TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE 241 (507)
Q Consensus 165 ~~~i~~~~~s~~~~~~~~-~~--~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~ 241 (507)
..+...+.|+++.++.++ .. ..|+.+|+++++......++. + ..-..+++ .++.|......++.+.+||..+.
T Consensus 20 ~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~-~fgeGi~~--~~~~ly~ltw~~~~v~v~D~~tl 95 (243)
T 3mbr_X 20 TAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPP-P-YFGAGIVA--WRDRLIQLTWRNHEGFVYDLATL 95 (243)
T ss_dssp TCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-T-CCEEEEEE--ETTEEEEEESSSSEEEEEETTTT
T ss_pred ccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-C-cceeEEEE--eCCEEEEEEeeCCEEEEEECCcC
Confidence 345778899886555544 33 599999999999988887643 1 11123344 35566665478999999999999
Q ss_pred eeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeec--CC---CceEEEEEcCCCCEEEEEe-CCcE
Q psy8285 242 RLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITR--EG---DVVCGLKWSPNGRYLASGS-NNTV 315 (507)
Q Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~-d~~i 315 (507)
+.+.++.... .-+.++++++.|+.+..++.|.++|..+.+. ...+.- +. ..++.+.+. +|+.++..- +..|
T Consensus 96 ~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~-~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I 172 (243)
T 3mbr_X 96 TPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQ-VGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRI 172 (243)
T ss_dssp EEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEE
T ss_pred cEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCCCCeE-EEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeE
Confidence 9999988543 3367888888777777789999999998763 222221 21 245566665 666554443 4899
Q ss_pred EEEEcCCCCCCCCeeeecC-------------CCCCeeEEEEccCCCcEEEEEc
Q psy8285 316 KIWDFRQLDAKRPQVNNQC-------------HLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
.+.|.+++ +.+..+.. ...-.+.|+++|+++.+++++-
T Consensus 173 ~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 173 ARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 99999987 44433321 1235689999999989998874
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.93 E-value=3.6e-06 Score=76.04 Aligned_cols=225 Identities=11% Similarity=0.038 Sum_probs=136.8
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecC--CeEEEEECCCCCcC
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIG--GNILHYDVRTHSDY 284 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d--g~i~i~d~~~~~~~ 284 (507)
.....++|+++++.+++- ..++.|..||.... ....+. .......+++ +++++++.... ..|..+|..+++.
T Consensus 32 ~~pegia~~~~g~lyv~d-~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~- 107 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTN-HEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV- 107 (306)
T ss_dssp CCEEEEEECTTSCEEEEE-TTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE-
T ss_pred CCcceEEECCCCCEEEEe-CCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE-
Confidence 457889999998855555 67899999997753 333332 3456778888 56755554332 2477777666542
Q ss_pred ceeee-cCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCee---------eecCCCCCeeEEEEccCCCcEEE
Q psy8285 285 PTAIT-REGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQV---------NNQCHLSAVKAIAWCPWEPTLLA 353 (507)
Q Consensus 285 ~~~~~-~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~~~~ 353 (507)
..... ........++..+++..+++.. ++.|+.+|...+.. .+. ...........+ +|+++.+++
T Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~--~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG--SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYV 183 (306)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE--EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEE
T ss_pred EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcE--eEEEECCccccccccCCCCcCCCc--CcCCCEEEE
Confidence 11111 1222344555555555455443 48888888764200 010 001111234555 888878888
Q ss_pred EEccCCCCeEEEEeCCC-CCe--eeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEE--Eeecccccee
Q psy8285 354 TGGGICDQTVRLWNSMN-GKE--KCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIE--ELKIHQERIL 428 (507)
Q Consensus 354 ~~~~~~d~~i~i~d~~~-~~~--~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~--~~~~~~~~i~ 428 (507)
+... .+.|..|++.. ++. ...+........++++++|+++++ ....+.|.++|.. ++... .+.......+
T Consensus 184 ~d~~--~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va--~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~ 258 (306)
T 2p4o_A 184 SNTE--KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA--THIYNSVVRIAPD-RSTTIIAQAEQGVIGST 258 (306)
T ss_dssp EETT--TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE--CBTTCCEEEECTT-CCEEEEECGGGTCTTEE
T ss_pred EeCC--CCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEE--eCCCCeEEEECCC-CCEEEEeecccccCCce
Confidence 7764 88999999874 332 122222234567899999987666 5567889999965 55432 3333335678
Q ss_pred EEEEC---CCCCEEEEEeCCC
Q psy8285 429 SAVLS---PDQTCVAAASADE 446 (507)
Q Consensus 429 ~~~~s---~~~~~l~s~~~dg 446 (507)
+++|. |+++.|+.++..+
T Consensus 259 ~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 259 AVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEECCSTTTTTEEEEEECTT
T ss_pred EEEEecccCCCCEEEEECCCC
Confidence 99998 8888777666544
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.3e-06 Score=75.81 Aligned_cols=240 Identities=13% Similarity=0.054 Sum_probs=151.5
Q ss_pred eEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEee--CCEE-EEEecCCeEEEEECCCCCcCcee
Q psy8285 211 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLL-SCGTIGGNILHYDVRTHSDYPTA 287 (507)
Q Consensus 211 v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l-~~~~~dg~i~i~d~~~~~~~~~~ 287 (507)
.+|.+..+ ..+|+.+ ....|+..++........+. .......++|+ +..| .+-...+.|..+++.... ....
T Consensus 36 ~~C~~~~~-~~~ll~~--~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~ 110 (349)
T 3v64_C 36 RSCKALGP-EPVLLFA--NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEV 110 (349)
T ss_dssp SCEEESSS-CCEEEEE--CBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEE
T ss_pred Cccccccc-CceeEee--cccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCC-ceEE
Confidence 34555445 3455555 45568888887655443333 34457888884 3444 444567889999988654 2222
Q ss_pred eecCCCceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC-CeEE
Q psy8285 288 ITREGDVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD-QTVR 364 (507)
Q Consensus 288 ~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d-~~i~ 364 (507)
..........+++.+.+..|+.+. .+.|.+.++... ...............++++|.+..++.+..+ . +.|.
T Consensus 111 ~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~---~~~~l~~~~l~~P~~iavdp~~g~ly~td~~--~~~~I~ 185 (349)
T 3v64_C 111 VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA---HRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIE 185 (349)
T ss_dssp ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECTTCSCEEEEEEETTTTEEEEEECS--SSCEEE
T ss_pred EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC---ceEEEEeCCCCCcceEEEecCcCeEEEeccC--CCCEEE
Confidence 322334457889998666665555 389999998754 2222233334567899999987788887764 5 8899
Q ss_pred EEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEe
Q psy8285 365 LWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 365 i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~ 443 (507)
.+++........+... .....++++|++..|+.+ -...+.|..+|+........+.........+++ ..+..+++-.
T Consensus 186 r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~a-D~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~ 263 (349)
T 3v64_C 186 ASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWV-DAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDW 263 (349)
T ss_dssp EEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEET
T ss_pred EEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEE-ECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecC
Confidence 9998654433333222 568999999988877775 456788999998754333333333344567777 3445555555
Q ss_pred CCCcEEEEecCCCCcccce
Q psy8285 444 ADETISIWNCFPRDKKRKA 462 (507)
Q Consensus 444 ~dg~i~iw~~~~~~~~~~~ 462 (507)
..+.|..++..+++....+
T Consensus 264 ~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 264 HTKSINSANKFTGKNQEII 282 (349)
T ss_dssp TTTEEEEEETTTCCSCEEE
T ss_pred CCCeEEEEEccCCCccEEe
Confidence 6778888886666555443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=1e-06 Score=86.84 Aligned_cols=279 Identities=12% Similarity=0.026 Sum_probs=169.6
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCc-------eEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeec
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAY-------ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTH 250 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~ 250 (507)
+++++.++.|+-+|..+|+.+-...... .... ...++. .+..++++ +.++.|.-+|..+++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~-~~~~~~~~~~~~~g~a~--~~~~v~~~-t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRL-PDDIRPCCDVVNRGAAI--YGDKVFFG-TLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCC-CTTCCCSSCSCCCCCEE--ETTEEEEE-ETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCC-CcccccccccCCCccEE--ECCEEEEE-eCCCEEEEEECCCCCEEeeecCC
Confidence 5556664569999999999877666532 1110 011222 24567777 78999999999999988776543
Q ss_pred Cc----cEE-E-EEeeC----C-EEEEEec------CCeEEEEECCCCCcCceeeecCCC--------------------
Q psy8285 251 MH----QVI-A-MCWNG----N-LLSCGTI------GGNILHYDVRTHSDYPTAITREGD-------------------- 293 (507)
Q Consensus 251 ~~----~v~-~-~~~~~----~-~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~-------------------- 293 (507)
.. .+. . +..++ + .+++++. ++.|+.+|..+++..-. ......
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~-~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWM-RPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEE-EESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEee-cCCCccccccccCccccccccccccc
Confidence 21 111 1 11233 2 5656543 78999999998763221 111000
Q ss_pred ---------------------ceEEEEEcCCCCEEEEEe---------------------C----CcEEEEEcCCCCCCC
Q psy8285 294 ---------------------VVCGLKWSPNGRYLASGS---------------------N----NTVKIWDFRQLDAKR 327 (507)
Q Consensus 294 ---------------------~v~~~~~~~~~~~l~~~~---------------------d----~~i~i~d~~~~~~~~ 327 (507)
.-..+++.|+..+++.+. | +.|..+|.+++ +
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG---~ 302 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSG---E 302 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTC---C
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCC---C
Confidence 001346667766766554 1 47889999888 5
Q ss_pred CeeeecC--CC--------CCeeEEEEc-cCCC--cEEEEEccCCCCeEEEEeCCCCCeeeeeecCCC------------
Q psy8285 328 PQVNNQC--HL--------SAVKAIAWC-PWEP--TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQ------------ 382 (507)
Q Consensus 328 ~~~~~~~--~~--------~~v~~~~~~-~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~------------ 382 (507)
.+-.++. |. .++. +... .+|+ .+++.++. +|.++++|..+|+.+..+.....
T Consensus 303 ~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~--~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g 379 (582)
T 1flg_A 303 VKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADR--NGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTG 379 (582)
T ss_dssp EEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECT--TSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTC
T ss_pred EEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECC--CceEEEEECCCCCEecccccccCccccccccccCC
Confidence 5544432 21 1111 1221 3564 35555554 99999999999998765543210
Q ss_pred ----------------------------------eEEEEECCCCCeEEEEec----------------------------
Q psy8285 383 ----------------------------------VTSILWSEQYRELVTSHG---------------------------- 400 (507)
Q Consensus 383 ----------------------------------i~~~~~s~~~~~l~~~~g---------------------------- 400 (507)
-..++++|+...+++...
T Consensus 380 ~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p 459 (582)
T 1flg_A 380 RPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKR 459 (582)
T ss_dssp CEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred CEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecC
Confidence 013466776666655210
Q ss_pred ---cCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecCCC
Q psy8285 401 ---KQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSG 468 (507)
Q Consensus 401 ---~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 468 (507)
..+|.|..||+.+++.+.+..... ++..-.....+.+++.++.||.++.||..+++.+.+.+.....
T Consensus 460 ~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~ 529 (582)
T 1flg_A 460 MYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGI 529 (582)
T ss_dssp SCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred CCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCc
Confidence 135789999999999988776432 2222222234677888999999999999999998877654433
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.7e-07 Score=78.12 Aligned_cols=185 Identities=8% Similarity=0.100 Sum_probs=124.1
Q ss_pred eEEEEeecCcc--EEEEEee-CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--CCcEEE
Q psy8285 243 LIQKLRTHMHQ--VIAMCWN-GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--NNTVKI 317 (507)
Q Consensus 243 ~~~~~~~~~~~--v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i 317 (507)
.+.++ .|... ...+.|+ +.+..+.+.+|.|+++|+.+++..... ......-..+++ +++.|.... ++.+.+
T Consensus 45 Vv~~~-phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS--DGERLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE--CSSCEEEEESSSCEEEE
T ss_pred EEEEE-cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE--eCCEEEEEEccCCEEEE
Confidence 34444 34433 3678885 445666677789999999998744433 222212233555 444555555 599999
Q ss_pred EEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC------CCeEEEEECCC
Q psy8285 318 WDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD------SQVTSILWSEQ 391 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------~~i~~~~~s~~ 391 (507)
||..+. +.+.++... ..-..++ +++..++++.+ ++.|.++|..+.+.+..+... ..++.+.|. +
T Consensus 121 ~D~~Tl---~~~~ti~~~-~eGwGLt--~Dg~~L~vSdG---s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d 190 (268)
T 3nok_A 121 WSGMPP---QRERTTRYS-GEGWGLC--YWNGKLVRSDG---GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N 190 (268)
T ss_dssp EETTTT---EEEEEEECS-SCCCCEE--EETTEEEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred EECCcC---cEEEEEeCC-CceeEEe--cCCCEEEEECC---CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence 999987 666666542 2223444 56777777764 899999999999988877642 245677777 6
Q ss_pred CCeEEEEeccCCCeEEEEeCCCccEEEEeecc-------------ccceeEEEECCCCCEEEEEe
Q psy8285 392 YRELVTSHGKQDCSLKMWEYPRLHLIEELKIH-------------QERILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 392 ~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~-------------~~~i~~~~~s~~~~~l~s~~ 443 (507)
|+ |.+. ...++.|.+.|..+++.+..+... ....+.|+|+|+++.|+..+
T Consensus 191 G~-lyan-vw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 191 GV-IYAN-IWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TE-EEEE-ETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CE-EEEE-ECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 65 4442 456789999999999998877532 13568899999876665555
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-07 Score=80.17 Aligned_cols=180 Identities=13% Similarity=0.080 Sum_probs=126.3
Q ss_pred cceeeeeeCCCCEE-EEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 166 FYTSGLDWGYHDTL-AVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 166 ~~i~~~~~s~~~~~-~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
-+...+.++.+.++ +.+.++.|+.+|+++++..... ++. ...-..+++ +++.|......++.+.+||..+.+.+
T Consensus 55 ~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~--~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 55 AFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLG--NIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECT--TCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEE
T ss_pred cccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCC--CcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEE
Confidence 34567888865544 4457788999999999988777 642 212233554 45555555478999999999999999
Q ss_pred EEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeee--cCC---CceEEEEEcCCCCEEEEEe-CCcEEEE
Q psy8285 245 QKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAIT--REG---DVVCGLKWSPNGRYLASGS-NNTVKIW 318 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~---~~v~~~~~~~~~~~l~~~~-d~~i~i~ 318 (507)
.++... ..-+.++++++.|+.+..++.|.++|..+.+. ...+. .+. ..++.+.|. +|++.+..- +..|.+.
T Consensus 130 ~ti~~~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v-~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vI 206 (268)
T 3nok_A 130 RTTRYS-GEGWGLCYWNGKLVRSDGGTMLTFHEPDGFAL-VGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEI 206 (268)
T ss_dssp EEEECS-SCCCCEEEETTEEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEE
T ss_pred EEEeCC-CceeEEecCCCEEEEECCCCEEEEEcCCCCeE-EEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEE
Confidence 998853 33467888999888888889999999998763 22222 122 234667777 776554443 4899999
Q ss_pred EcCCCCCCCCeeeecC-------------CCCCeeEEEEccCCCcEEEEEc
Q psy8285 319 DFRQLDAKRPQVNNQC-------------HLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
|.+++ +.+..+.. ...-.+.|+++|+++.+++++-
T Consensus 207 Dp~TG---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 207 DPATG---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CTTTC---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred eCCCC---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 99988 44444321 1235689999999999999874
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.88 E-value=5e-06 Score=77.67 Aligned_cols=239 Identities=13% Similarity=0.058 Sum_probs=152.1
Q ss_pred EEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEee--CC-EEEEEecCCeEEEEECCCCCcCceeee
Q psy8285 213 CVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GN-LLSCGTIGGNILHYDVRTHSDYPTAIT 289 (507)
Q Consensus 213 ~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 289 (507)
|.+..+ ..+|+.+ ....|+.+++.......... .......++|+ +. ++++-...+.|..+++.... ......
T Consensus 81 C~~~~~-~~~l~~~--~~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~-~~~~~~ 155 (386)
T 3v65_B 81 CKALGP-EPVLLFA--NRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSN-VEEVVS 155 (386)
T ss_dssp EEECSS-CCEEEEE--CBSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC-EEEEEC
T ss_pred ECCccc-cceeEee--cCccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC-cEEEEe
Confidence 444444 3455555 45678888887665544443 34457788884 34 44455567889999988654 222222
Q ss_pred cCCCceEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC-CeEEEE
Q psy8285 290 REGDVVCGLKWSPNGRYLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD-QTVRLW 366 (507)
Q Consensus 290 ~~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d-~~i~i~ 366 (507)
........+++.+.+..|+... . +.|.+.++... ...............++++|.+..++.+..+ . +.|..+
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~---~~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~r~ 230 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA---HRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIEAS 230 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC---SCEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEEEE
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC---ceEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEEEE
Confidence 2233456788998666666555 3 88988888754 2222333334567899999988788887754 5 789999
Q ss_pred eCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCC
Q psy8285 367 NSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASAD 445 (507)
Q Consensus 367 d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~d 445 (507)
++............ .....++++|++..|+.+ -...+.|..+|+........+.........+++ ..+..+++-...
T Consensus 231 ~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~ 308 (386)
T 3v65_B 231 SMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWV-DAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHT 308 (386)
T ss_dssp ETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEE-ETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTT
T ss_pred eCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEE-ECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCC
Confidence 98654433333332 468999999988877775 456788999998754333333333344567777 344555666667
Q ss_pred CcEEEEecCCCCccccee
Q psy8285 446 ETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 446 g~i~iw~~~~~~~~~~~~ 463 (507)
+.|..++..+++....+.
T Consensus 309 ~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 309 KSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TEEEEEETTTCCSCEEEE
T ss_pred CeEEEEECCCCcceEEEc
Confidence 888888866666555443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.85 E-value=8.9e-06 Score=73.55 Aligned_cols=234 Identities=9% Similarity=-0.061 Sum_probs=147.2
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee-EEEEeecCccEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL-IQKLRTHMHQVIA 256 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~ 256 (507)
+|..+....|+..++............ .......++|.+.+..|+.+....+.|..+++..... ...+.........
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~--~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVG--GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEE--EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEec--CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 566667788999999876421111111 2245779999997777777646778999999876532 1222222223344
Q ss_pred EEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCCCCCCee
Q psy8285 257 MCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--N-NTVKIWDFRQLDAKRPQV 330 (507)
Q Consensus 257 ~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~~~~~~~~ 330 (507)
+++ ++++.++-...+.|.++++.... ..............+++.|.+..|+.+. . +.|...++... ....
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~---~~~~ 159 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---SRFI 159 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC---SCEE
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCc-EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC---CeEE
Confidence 554 34455555567889999987643 2222334445678999999766666554 2 77888887643 2222
Q ss_pred eecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec-CCCeEEEEECCCCCeEEEEeccCCCeEEEE
Q psy8285 331 NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMW 409 (507)
Q Consensus 331 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~ 409 (507)
.....-.....++++|++..++.+... .+.|..+|+........... ......+++.. ..++.+ ....+.|..+
T Consensus 160 ~~~~~l~~Pnglavd~~~~~lY~aD~~--~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~--~~lywt-d~~~~~V~~~ 234 (318)
T 3sov_A 160 IINSEIYWPNGLTLDYEEQKLYWADAK--LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWT-DWSTHSILAC 234 (318)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEECSCCSCEEEEEEET--TEEEEE-ETTTTEEEEE
T ss_pred EEECCCCCccEEEEeccCCEEEEEECC--CCEEEEEcCCCCceEEEecCCCCCceEEEEeC--CEEEEE-ecCCCeEEEE
Confidence 222233457899999988888888765 88999999865433333332 24567777753 344443 4567899999
Q ss_pred eCCCccEEEEeec
Q psy8285 410 EYPRLHLIEELKI 422 (507)
Q Consensus 410 d~~~~~~~~~~~~ 422 (507)
+..+++....+..
T Consensus 235 ~~~~G~~~~~i~~ 247 (318)
T 3sov_A 235 NKYTGEGLREIHS 247 (318)
T ss_dssp ETTTCCSCEEEEC
T ss_pred ECCCCCceEEEeC
Confidence 9887776655543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=6e-07 Score=90.29 Aligned_cols=259 Identities=12% Similarity=0.088 Sum_probs=157.6
Q ss_pred CEEEEEcCCeEEEEECCCCceeEEEecCCCCC--CceEE-EEEccCCCeEEEEeC-----CCCcEEEEeCCCceeEEEEe
Q psy8285 177 DTLAVALDTSVYTWNTKTNKTQLLVEYPTYDN--AYISC-VAWKPRTTDLAVTNT-----CTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 177 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~--~~v~~-~~~~~~~~~l~~~~~-----~dg~i~iwd~~~~~~~~~~~ 248 (507)
.+++++.++.|+.+|..+|+..-...... .. ..+.+ ... .+..++++.+ .+|.|..+|..+++.+..+.
T Consensus 119 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGKAIWSQQTTD-PAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSC-TTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCCEeeeeccCC-CCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 36666789999999999999876665521 10 11111 111 1345555512 25899999999999988775
Q ss_pred ecC---c----------------------------cEEEEEe--eCCEEEEEecCC-------------------eEEEE
Q psy8285 249 THM---H----------------------------QVIAMCW--NGNLLSCGTIGG-------------------NILHY 276 (507)
Q Consensus 249 ~~~---~----------------------------~v~~~~~--~~~~l~~~~~dg-------------------~i~i~ 276 (507)
... . ....+++ +...++.++.++ .|..+
T Consensus 196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al 275 (668)
T 1kv9_A 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (668)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 310 0 0012455 356787887665 38999
Q ss_pred ECCCCCcCceeeec-CC-------CceEEEEEcCCCC---EEEEEe-CCcEEEEEcCCCCCCCCeeeecCCC--------
Q psy8285 277 DVRTHSDYPTAITR-EG-------DVVCGLKWSPNGR---YLASGS-NNTVKIWDFRQLDAKRPQVNNQCHL-------- 336 (507)
Q Consensus 277 d~~~~~~~~~~~~~-~~-------~~v~~~~~~~~~~---~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~-------- 336 (507)
|.++++..-..... |. .+.....+..+|+ .++.++ +|.++++|.+++ +.+.......
T Consensus 276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG---~~l~~~~~~~~~w~~~~d 352 (668)
T 1kv9_A 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG---KLISAEKFGKVTWAEKVD 352 (668)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTC---CEEEEEESSCCCSEEEEC
T ss_pred cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCC---CEeccccccccccccccc
Confidence 99988733222211 21 2233233334665 567777 599999999888 4332111000
Q ss_pred ----CC------------------------eeEEEEccCCCcEEEEE---------------------------------
Q psy8285 337 ----SA------------------------VKAIAWCPWEPTLLATG--------------------------------- 355 (507)
Q Consensus 337 ----~~------------------------v~~~~~~~~~~~~~~~~--------------------------------- 355 (507)
.+ -..++++|+...+++..
T Consensus 353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 00 01267777765544421
Q ss_pred ccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccce-eEEEECC
Q psy8285 356 GGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERI-LSAVLSP 434 (507)
Q Consensus 356 ~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i-~~~~~s~ 434 (507)
....++.|..||+.+++.+.............+...+..+++ ++.|+.++.||.++++.+..++...... .-+.+..
T Consensus 433 ~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~--g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~ 510 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ--GTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFEL 510 (668)
T ss_dssp GGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEE
T ss_pred CCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEE--ECCcccchhhhhhcChhheEecCCCCcccCceEEEE
Confidence 011248899999999999887776654444445556788888 7889999999999999998887543211 2234445
Q ss_pred CCC-EEEEEe
Q psy8285 435 DQT-CVAAAS 443 (507)
Q Consensus 435 ~~~-~l~s~~ 443 (507)
+|+ +++.++
T Consensus 511 ~G~~yva~~~ 520 (668)
T 1kv9_A 511 AGRQYVAIMA 520 (668)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 666 444443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-05 Score=71.57 Aligned_cols=235 Identities=10% Similarity=-0.023 Sum_probs=146.8
Q ss_pred CeEEEEeCCCCcEEEEeCCCce-eEEEEeecCccEEEEEee---CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceE
Q psy8285 221 TDLAVTNTCTEYIDLWHEQEER-LIQKLRTHMHQVIAMCWN---GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVC 296 (507)
Q Consensus 221 ~~l~~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 296 (507)
.+|+.+ ....|+..++.... ....+........+++|+ +.++.+-...+.|..+++.............-....
T Consensus 5 p~ll~~--~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~ 82 (318)
T 3sov_A 5 PLLLYA--NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD 82 (318)
T ss_dssp CEEEEE--CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC
T ss_pred cEEEEE--ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc
Confidence 355555 46789999987653 122222223356688884 445555556788999998875422233333334566
Q ss_pred EEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCee
Q psy8285 297 GLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK 374 (507)
Q Consensus 297 ~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~ 374 (507)
.+++.+.+..|+.+. .+.|.++++... ...............+++.|.+..++.+..+ ..+.|...++......
T Consensus 83 glavd~~~g~ly~~d~~~~~I~~~~~dG~---~~~~l~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~~~ 158 (318)
T 3sov_A 83 GLACDWLGEKLYWTDSETNRIEVSNLDGS---LRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRF 158 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETTSCSCE
T ss_pred EEEEEcCCCeEEEEECCCCEEEEEECCCC---cEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCCCeE
Confidence 789998666665554 389999998753 2222222344567899999987677777632 2578988887643332
Q ss_pred eeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 375 CHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 375 ~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
...... .....++++|++..|+.+ -...+.|..+|+........+.+.......+++.. +..+.+-...+.|..++.
T Consensus 159 ~~~~~~l~~Pnglavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~ 236 (318)
T 3sov_A 159 IIINSEIYWPNGLTLDYEEQKLYWA-DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNK 236 (318)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred EEEECCCCCccEEEEeccCCEEEEE-ECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEEC
Confidence 222222 567899999988877775 45678999999864333222232334456677743 345555556788999998
Q ss_pred CCCCccccee
Q psy8285 454 FPRDKKRKAR 463 (507)
Q Consensus 454 ~~~~~~~~~~ 463 (507)
.+++....+.
T Consensus 237 ~~G~~~~~i~ 246 (318)
T 3sov_A 237 YTGEGLREIH 246 (318)
T ss_dssp TTCCSCEEEE
T ss_pred CCCCceEEEe
Confidence 7776654443
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=4.2e-05 Score=69.24 Aligned_cols=231 Identities=13% Similarity=0.003 Sum_probs=144.0
Q ss_pred eEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEee--CCEEE-EEecCCeEEEEECCCC---CcCceeeecCCCce
Q psy8285 222 DLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLS-CGTIGGNILHYDVRTH---SDYPTAITREGDVV 295 (507)
Q Consensus 222 ~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~-~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v 295 (507)
+|+.+ ....|+..|+.+.+....+. .......+.|+ ++.|+ +-...+.|..+++... ..........-...
T Consensus 3 ~ll~~--~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 79 (316)
T 1ijq_A 3 YLFFT--NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (316)
T ss_dssp EEEEE--CBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEE--CCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence 45555 45679999998876555444 34557788884 44444 4455688999998761 21222222222455
Q ss_pred EEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe
Q psy8285 296 CGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE 373 (507)
Q Consensus 296 ~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 373 (507)
..+++.+.+..|+.+. .+.|.++++... ...............++++|.+..++.+..+ ..+.|..+++.. +.
T Consensus 80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~---~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG-~~ 154 (316)
T 1ijq_A 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG-VD 154 (316)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSS---SEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS-CC
T ss_pred CEEEEeecCCeEEEEECCCCEEEEEeCCCC---ceEEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCC-CC
Confidence 7899987666665554 489999998753 2222222234567899999987788877653 127898888754 33
Q ss_pred eeee-ecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec--cccceeEEEECCCCCEEEEEeCCCcEE
Q psy8285 374 KCHV-KTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI--HQERILSAVLSPDQTCVAAASADETIS 449 (507)
Q Consensus 374 ~~~~-~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~s~~~dg~i~ 449 (507)
...+ ... .....++++|++..|+.+ -...+.|..+|+........... .......+++. .+..+++-...+.|.
T Consensus 155 ~~~~~~~~~~~P~gla~d~~~~~lY~~-D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 155 IYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 232 (316)
T ss_dssp EEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred eEEEEECCCCCceEEEEeccCCEEEEE-ECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEE
Confidence 3333 222 568899999988888775 45677999999874322222221 12334677774 355555666678899
Q ss_pred EEecCCCCcccce
Q psy8285 450 IWNCFPRDKKRKA 462 (507)
Q Consensus 450 iw~~~~~~~~~~~ 462 (507)
.++..+++....+
T Consensus 233 ~~~~~~g~~~~~i 245 (316)
T 1ijq_A 233 SANRLTGSDVNLL 245 (316)
T ss_dssp EEETTTCCCCEEE
T ss_pred EEeCCCCcceEEE
Confidence 9998777655444
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.5e-05 Score=78.83 Aligned_cols=273 Identities=11% Similarity=0.079 Sum_probs=175.3
Q ss_pred ceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecC----CCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc
Q psy8285 167 YTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYP----TYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE 241 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~ 241 (507)
.|.++...+++ +.+++.++.|.+|+..+++........ ......|.++...++|...+.+ .+ -|.+||..++
T Consensus 216 ~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt--~~-Gl~~~~~~~~ 292 (795)
T 4a2l_A 216 QIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGT--FN-DLNIYHEGTD 292 (795)
T ss_dssp CEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEE--SS-CEEEEETTTT
T ss_pred eeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEe--CC-hhheEcCCCC
Confidence 45666666666 666666667999998877654432210 0024679999999888766544 44 5889998876
Q ss_pred eeEEEEee-------cCccEEEEEee-CCEEEEEecCCeEEEEECCCCCcCceeee-------cCCCceEEEEEcCCCCE
Q psy8285 242 RLIQKLRT-------HMHQVIAMCWN-GNLLSCGTIGGNILHYDVRTHSDYPTAIT-------REGDVVCGLKWSPNGRY 306 (507)
Q Consensus 242 ~~~~~~~~-------~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~ 306 (507)
+....... ....|.++..| ...|-.|+.++-|..++..+.. ...+. -....|.++...++|++
T Consensus 293 ~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~l~~~~V~~i~~d~~g~l 370 (795)
T 4a2l_A 293 SFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNR--FKNIRNIPYKNSLSDNVVSCIVEDKDKNL 370 (795)
T ss_dssp EEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGS--SEEECCCTTSSSCSCSSEEEEEECTTSCE
T ss_pred eEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCccc--ceEEcCCCCCCCCCCCeeEEEEECCCCCE
Confidence 65433211 23568888884 4456677777788888876543 11111 12456899999988886
Q ss_pred EEEEeCCcEEEEEcCCCCCCCCeeeec---------CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeee
Q psy8285 307 LASGSNNTVKIWDFRQLDAKRPQVNNQ---------CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHV 377 (507)
Q Consensus 307 l~~~~d~~i~i~d~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 377 (507)
.+...++-|..||..++ ....+. .....|.++...+++..+.+... ++-|..||..+++.....
T Consensus 371 WiGt~~~Gl~~~~~~~~----~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~---~~Gl~~~d~~~~~~~~~~ 443 (795)
T 4a2l_A 371 WIGTNDGGLNLYNPITQ----RFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH---AGGLSILHRNSGQVENFN 443 (795)
T ss_dssp EEEESSSCEEEECTTTC----CEEEECCC------CCSCSCEEEEEEETTTTEEEEEET---TTEEEEEETTTCCEEEEC
T ss_pred EEEECCCCeEEEcCCCC----cEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC---cCceeEEeCCCCcEEEee
Confidence 66444578999998764 222221 12356889998887741444332 677999998877644322
Q ss_pred e-----cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec------cccceeEEEECCCCCEEEEEeCCC
Q psy8285 378 K-----TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI------HQERILSAVLSPDQTCVAAASADE 446 (507)
Q Consensus 378 ~-----~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~------~~~~i~~~~~s~~~~~l~s~~~dg 446 (507)
. ....|.++...++|...+. +. +-+.+||..+++....... ....|.++...++|+..+... +
T Consensus 444 ~~~~~l~~~~v~~i~~d~~g~lwig---t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~ 517 (795)
T 4a2l_A 444 QRNSQLVNENVYAILPDGEGNLWLG---TL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--E 517 (795)
T ss_dssp TTTSCCSCSCEEEEEECSSSCEEEE---ES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--S
T ss_pred cCCCCcCCCeeEEEEECCCCCEEEE---ec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--C
Confidence 1 1246899999998886665 23 4588999877654322211 235689999999988666444 4
Q ss_pred cEEEEecCCCC
Q psy8285 447 TISIWNCFPRD 457 (507)
Q Consensus 447 ~i~iw~~~~~~ 457 (507)
-|..|+..+.+
T Consensus 518 Gl~~~~~~~~~ 528 (795)
T 4a2l_A 518 GLSVFKQEGLD 528 (795)
T ss_dssp CEEEEEEETTE
T ss_pred ceEEEeCCCCe
Confidence 58888876543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.5e-06 Score=70.85 Aligned_cols=188 Identities=10% Similarity=0.087 Sum_probs=123.4
Q ss_pred eeEEEEeecCcc--EEEEEeeCCEEEEE-ecC--CeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--CCc
Q psy8285 242 RLIQKLRTHMHQ--VIAMCWNGNLLSCG-TIG--GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--NNT 314 (507)
Q Consensus 242 ~~~~~~~~~~~~--v~~~~~~~~~l~~~-~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~ 314 (507)
+.+.++ .|... ...+.|++..|..+ +.+ ..|+.+|+.+++. .....-. .........+++..|.... ++.
T Consensus 10 ~v~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv-~~~~~l~-~~~fgeGi~~~~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 10 RVVKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRI-LQRAEVP-PPYFGAGIVAWRDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCE-EEEEECC-TTCCEEEEEEETTEEEEEESSSSE
T ss_pred EEEEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCE-EEEEeCC-CCcceeEEEEeCCEEEEEEeeCCE
Confidence 344455 35433 56888865555444 443 4899999999873 3333222 2222222233355666556 599
Q ss_pred EEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC------CCeEEEEE
Q psy8285 315 VKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD------SQVTSILW 388 (507)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------~~i~~~~~ 388 (507)
+.+||..+. +.+.++.... .-..++ +++..++++.+ ++.|.++|..+.+.+..+... ..++.+.|
T Consensus 87 v~v~D~~tl---~~~~ti~~~~-~Gwglt--~dg~~L~vSdg---s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~ 157 (243)
T 3mbr_X 87 GFVYDLATL---TPRARFRYPG-EGWALT--SDDSHLYMSDG---TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW 157 (243)
T ss_dssp EEEEETTTT---EEEEEEECSS-CCCEEE--ECSSCEEEECS---SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred EEEEECCcC---cEEEEEeCCC-CceEEe--eCCCEEEEECC---CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE
Confidence 999999987 6777766432 223444 57778888764 889999999999988877643 34566776
Q ss_pred CCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc-------------ccceeEEEECCCCCEEEEEeC
Q psy8285 389 SEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH-------------QERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 389 s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~-------------~~~i~~~~~s~~~~~l~s~~~ 444 (507)
. +|+..+. ...+..|.+.|..+++.+..+... ....+.|+++|+++.|+..+.
T Consensus 158 ~-~G~lyan--vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 158 V-NGELLAN--VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp E-TTEEEEE--ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred e-CCEEEEE--ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 6 5554433 445779999999999998877521 124688999998777766664
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.5e-06 Score=84.02 Aligned_cols=255 Identities=13% Similarity=-0.003 Sum_probs=153.1
Q ss_pred CEEEEEcCCeEEEEECCCCceeEEEecCCCCCC--ceEE-EEEccCCCeEEEEeCC------CCcEEEEeCCCceeEEEE
Q psy8285 177 DTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA--YISC-VAWKPRTTDLAVTNTC------TEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 177 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~--~v~~-~~~~~~~~~l~~~~~~------dg~i~iwd~~~~~~~~~~ 247 (507)
.+++++.++.|+.+|..+|+..-...... +.. .+.+ .... + ..++++ +. ++.|..+|..+++.+..+
T Consensus 117 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~v~-~-g~v~vg-~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 117 QIVKKQANGHLLALDAKTGKINWEVEVCD-PKVGSTLTQAPFVA-K-DTVLMG-CSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC-GGGTCBCCSCCEEE-T-TEEEEE-CBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEecCCC-CCccceeccCCEEE-C-CEEEEE-ecCCccCCCCEEEEEECCCCcEEEEE
Confidence 36666789999999999999876665432 110 1111 1111 3 456665 33 799999999999998876
Q ss_pred eecCcc-------------------------------------E-EEEEee--CCEEEEEecC----------------C
Q psy8285 248 RTHMHQ-------------------------------------V-IAMCWN--GNLLSCGTIG----------------G 271 (507)
Q Consensus 248 ~~~~~~-------------------------------------v-~~~~~~--~~~l~~~~~d----------------g 271 (507)
...... + ..++++ ...++.+..+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 542211 0 123443 3566555532 3
Q ss_pred eEEEEECCCCCcCceeeec-C--------CCceEEEEEcCCCC---EEEEEe-CCcEEEEEcCCCCCCCCeeeecCCC--
Q psy8285 272 NILHYDVRTHSDYPTAITR-E--------GDVVCGLKWSPNGR---YLASGS-NNTVKIWDFRQLDAKRPQVNNQCHL-- 336 (507)
Q Consensus 272 ~i~i~d~~~~~~~~~~~~~-~--------~~~v~~~~~~~~~~---~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~-- 336 (507)
.|..+|.++++..-..... | ..++. +....+|+ .++.++ +|.++++|.+++ +.+.......
T Consensus 273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG---~~~w~~~~~~~~ 348 (571)
T 2ad6_A 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENG---NLIVAEKVDPAV 348 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTC---CEEEEEESSTTC
T ss_pred EEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCC---CEEeeecccCCc
Confidence 5899999988732222111 1 12221 22334674 456666 599999999887 4433322110
Q ss_pred -----------CCe--------------------------eEEEEccCCCcEEEEEcc----------------------
Q psy8285 337 -----------SAV--------------------------KAIAWCPWEPTLLATGGG---------------------- 357 (507)
Q Consensus 337 -----------~~v--------------------------~~~~~~~~~~~~~~~~~~---------------------- 357 (507)
.++ ..++++|+...+++....
T Consensus 349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 428 (571)
T 2ad6_A 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT 428 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccc
Confidence 011 246788877655554310
Q ss_pred ------------CCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecccc
Q psy8285 358 ------------ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQE 425 (507)
Q Consensus 358 ------------~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~ 425 (507)
..++.|..||+.+++.+..+.....+....+...+..+++ ++.|+.|+.+|.++++.+.++.....
T Consensus 429 ~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~--g~~dg~l~a~D~~tG~~lw~~~~~~~ 506 (571)
T 2ad6_A 429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWY--ATLDGYLKALDNKDGKELWNFKMPSG 506 (571)
T ss_dssp EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred ceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEE--EcCCCeEEEEECCCCCEEEEEeCCCC
Confidence 1258999999999999888766544333333334667777 77899999999999999998874332
Q ss_pred c-eeEEEECCCCCEEEE
Q psy8285 426 R-ILSAVLSPDQTCVAA 441 (507)
Q Consensus 426 ~-i~~~~~s~~~~~l~s 441 (507)
. -.-+.+..+|+.++.
T Consensus 507 ~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 507 GIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp CCSCCEEEEETTEEEEE
T ss_pred cEeeeEEEEECCEEEEE
Confidence 1 122345567765443
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=6.9e-05 Score=74.38 Aligned_cols=231 Identities=9% Similarity=-0.032 Sum_probs=151.7
Q ss_pred CCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEE
Q psy8285 176 HDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVI 255 (507)
Q Consensus 176 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 255 (507)
..+|..+....|+..++.+.+......+. .-..+..++|++.+..|+.+...++.|+.+++........+........
T Consensus 6 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~--~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 6 EAFLLFSRRADIRRISLETNNNNVAIPLT--GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp CCEEEEEETTEEEEEESSCTTCEEECCCC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred CcEEEEEeCCcEEEEECCCCCcceEEEcC--CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 34666678889999999876654444433 3356889999998888887746788999999876544333432223344
Q ss_pred EEEe--e-CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe---CCcEEEEEcCCCCCCCCe
Q psy8285 256 AMCW--N-GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS---NNTVKIWDFRQLDAKRPQ 329 (507)
Q Consensus 256 ~~~~--~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~ 329 (507)
.+++ . +++.++-...+.|.+.+++... ........-.....+++.|....|+... .+.|...++... ..
T Consensus 84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~----~~ 158 (628)
T 4a0p_A 84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS----ER 158 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----SC
T ss_pred eEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC----ce
Confidence 4555 3 4455555566889999987643 2222223445678999999665665554 267888887654 22
Q ss_pred eeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEE
Q psy8285 330 VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKM 408 (507)
Q Consensus 330 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v 408 (507)
..+.........+++++++..++.+..+ .+.|..+|+..... ..+... .....+++.. ..|+.+ -...+.|..
T Consensus 159 ~~l~~~~~~P~GlalD~~~~~LY~aD~~--~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~--~~ly~t-D~~~~~I~~ 232 (628)
T 4a0p_A 159 TTLVPNVGRANGLTIDYAKRRLYWTDLD--TNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ--DYIYWT-DWSRRSIER 232 (628)
T ss_dssp EEEECSCSSEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSC-EEEEECCSCEEEEEEET--TEEEEE-ETTTTEEEE
T ss_pred EEEECCCCCcceEEEccccCEEEEEECC--CCEEEEEcCCCCce-EEeeccCCCceEEEEEC--CEEEEe-cCCCCEEEE
Confidence 2222345677899999988888888765 88999999876544 333332 4567788765 345543 456788999
Q ss_pred EeCCCccEEEE
Q psy8285 409 WEYPRLHLIEE 419 (507)
Q Consensus 409 ~d~~~~~~~~~ 419 (507)
.|..+++....
T Consensus 233 ~dk~tg~~~~~ 243 (628)
T 4a0p_A 233 ANKTSGQNRTI 243 (628)
T ss_dssp EETTTCCSCEE
T ss_pred EECCCCCceEE
Confidence 99776654333
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.3e-05 Score=78.47 Aligned_cols=232 Identities=7% Similarity=-0.024 Sum_probs=149.0
Q ss_pred CEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc----eeEEEEeecCc
Q psy8285 177 DTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE----RLIQKLRTHMH 252 (507)
Q Consensus 177 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~----~~~~~~~~~~~ 252 (507)
.++..+....|+..++...+...+.. ....+..|+|.+.+..|+.+....+.|+.+++... .....+.....
T Consensus 396 p~Ll~an~~~Ir~i~l~~~~~~~l~~----~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~ 471 (791)
T 3m0c_C 396 AYLFFTNRHEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 471 (791)
T ss_dssp CEEEEECBSSEEEECTTSCCCEEEEC----SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred cccccccccceeEeeccCCcceeeec----CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCC
Confidence 36666677788888887766555443 45668899999977777766466788999988753 22233332333
Q ss_pred cEEEEEe--eC-CEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCCCC
Q psy8285 253 QVIAMCW--NG-NLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--N-NTVKIWDFRQLDAK 326 (507)
Q Consensus 253 ~v~~~~~--~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~~~~ 326 (507)
....|++ .+ +++++-...+.|.+.++.... ..............|++.|.+..|+.+. . +.|...++...
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~--- 547 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV--- 547 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---
Confidence 3445555 34 455555667899999998643 2233333445678999999866666655 3 67888888753
Q ss_pred CCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECCCCCeEEEEeccCC
Q psy8285 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSEQYRELVTSHGKQD 403 (507)
Q Consensus 327 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~g~~d 403 (507)
...............|++++.+..|+++-.+ ...|..+++........+... .....|++. +.+|+.+ -...
T Consensus 548 ~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~--~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwt-D~~~ 622 (791)
T 3m0c_C 548 DIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT-DIIN 622 (791)
T ss_dssp CEEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEE-ETTT
T ss_pred ceEEEEeCCCCCceEEEEecCCCeEEEEeCC--CCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEE-ECCC
Confidence 2222233334578899999888788887764 789999998655544444332 345667664 4455554 4567
Q ss_pred CeEEEEeCCCccEEEEee
Q psy8285 404 CSLKMWEYPRLHLIEELK 421 (507)
Q Consensus 404 ~~i~v~d~~~~~~~~~~~ 421 (507)
+.|...|..+++.+..+.
T Consensus 623 ~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 623 EAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TEEEEEETTTCCCCEEEE
T ss_pred CEEEEEeCCCCcceEEee
Confidence 889989877776555543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.72 E-value=3.6e-05 Score=66.33 Aligned_cols=202 Identities=12% Similarity=0.115 Sum_probs=134.9
Q ss_pred ecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee-cCccEEEEEe--eCCEEEEEecCCeEEEEEC
Q psy8285 202 EYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT-HMHQVIAMCW--NGNLLSCGTIGGNILHYDV 278 (507)
Q Consensus 202 ~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~ 278 (507)
.+++ -...+..++|+|++..|++....++.|...|.. ++.++.+.- .....-.+++ ++.++++.-.++.+.++++
T Consensus 21 ~l~g-~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAG-ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTT-CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ECCC-cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 4556 566899999999887777654778899999988 787777642 2345677788 4555555556778999988
Q ss_pred CCCCcC--ceee------ecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeeee-------cCCCCCeeEE
Q psy8285 279 RTHSDY--PTAI------TREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNN-------QCHLSAVKAI 342 (507)
Q Consensus 279 ~~~~~~--~~~~------~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~-------~~~~~~v~~~ 342 (507)
...... .... .........++|+|+++.|.++.+ ....+|.++.......+... ..+...+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 765421 1111 123445789999999987777774 44455555421000112211 1133467899
Q ss_pred EEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC----------CCeEEEEECCCCCeEEEEeccCCCeEEEEeC
Q psy8285 343 AWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD----------SQVTSILWSEQYRELVTSHGKQDCSLKMWEY 411 (507)
Q Consensus 343 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~ 411 (507)
+++|...++++.+.. ++.+..+|.. ++.+..+.-. .....++|.++|+..++ ++.+.+++|.-
T Consensus 179 ~~dp~tg~lliLS~~--s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv---sE~n~~y~f~~ 251 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHE--SRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV---SEPNRFYRFTP 251 (255)
T ss_dssp EEETTTTEEEEEETT--TTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE---ETTTEEEEEEC
T ss_pred EEcCCCCeEEEEECC--CCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE---cCCceEEEEEe
Confidence 999998888888775 8899999965 5565554432 26789999999985554 56777777764
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.7e-05 Score=70.84 Aligned_cols=234 Identities=10% Similarity=0.055 Sum_probs=135.3
Q ss_pred eeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCC----------------CCCceEEEEEccCCCeEEEEeCCCC
Q psy8285 170 GLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTY----------------DNAYISCVAWKPRTTDLAVTNTCTE 231 (507)
Q Consensus 170 ~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~----------------~~~~v~~~~~~~~~~~l~~~~~~dg 231 (507)
.++|.+++ +++...++.|..|+..+++.......... ....+..+++.+++..|+++ ...+
T Consensus 23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~-d~~~ 101 (322)
T 2fp8_A 23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV-DCYY 101 (322)
T ss_dssp CEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE-ETTT
T ss_pred EEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE-ECCC
Confidence 58888876 55555788999999877655433211000 01357899999833355555 4455
Q ss_pred cEEEEeCCCceeEEEEee----cCccEEEEEee---CCEEEEEec-----------------CCeEEEEECCCCCcCcee
Q psy8285 232 YIDLWHEQEERLIQKLRT----HMHQVIAMCWN---GNLLSCGTI-----------------GGNILHYDVRTHSDYPTA 287 (507)
Q Consensus 232 ~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~---~~~l~~~~~-----------------dg~i~i~d~~~~~~~~~~ 287 (507)
.+..+|..+++....... .......+.++ +++.++-.. ++.|..+|..+++ ...
T Consensus 102 ~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--~~~ 179 (322)
T 2fp8_A 102 HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE--TTL 179 (322)
T ss_dssp EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE--EEE
T ss_pred CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE--EEE
Confidence 588898776543221111 11235667773 444444322 3668888876554 111
Q ss_pred eecCCCceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEcc--------
Q psy8285 288 ITREGDVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGG-------- 357 (507)
Q Consensus 288 ~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------- 357 (507)
+.........++++|+++.|+.+. .+.|..|++..... .....+....+ ...+++.++|. ++++...
T Consensus 180 ~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~~~~~~~~~~g-P~gi~~d~~G~-l~va~~~~~~~~~~~ 256 (322)
T 2fp8_A 180 LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-GTAEVLVKIPN-PGNIKRNADGH-FWVSSSEELDGNMHG 256 (322)
T ss_dssp EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-TCEEEEEECSS-EEEEEECTTSC-EEEEEEEETTSSTTS
T ss_pred eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-CccceEEeCCC-CCCeEECCCCC-EEEEecCcccccccC
Confidence 211123345789999999777665 38999999875311 11222211223 78899999985 5554431
Q ss_pred CCCCeEEEEeCCCCCeeeeeecC-----CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 358 ICDQTVRLWNSMNGKEKCHVKTD-----SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 358 ~~d~~i~i~d~~~~~~~~~~~~~-----~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
...+.|..+|. .++.+..+... ..++.+++ .+++.+++ ...++.|.++++..
T Consensus 257 ~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~--~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 257 RVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIG--TLFHGSVGILVYDK 313 (322)
T ss_dssp CEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEE--CSSCSEEEEEEC--
T ss_pred CCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEe--ecCCCceEEEeccc
Confidence 01356888886 47766666543 24566666 34544444 55678899988753
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.7e-05 Score=70.26 Aligned_cols=220 Identities=9% Similarity=-0.007 Sum_probs=132.4
Q ss_pred ceeeeeeCCCC-EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCC-cEEEEeCCCcee
Q psy8285 167 YTSGLDWGYHD-TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTE-YIDLWHEQEERL 243 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg-~i~iwd~~~~~~ 243 (507)
....++|++++ ++.+. .++.|..|+... +....... ......+++.++++.+++....++ .|..+|..+++.
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~----~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATV----EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEEC----SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeC----CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence 45679999987 55554 678999999865 44444443 346889999999985554412222 477778777765
Q ss_pred EEEEee-cCccEEEEE-eeCCEEEEEe-cCCeEEEEECCCCCcCce---------eeecCCCceEEEEEcCCCCEEEEEe
Q psy8285 244 IQKLRT-HMHQVIAMC-WNGNLLSCGT-IGGNILHYDVRTHSDYPT---------AITREGDVVCGLKWSPNGRYLASGS 311 (507)
Q Consensus 244 ~~~~~~-~~~~v~~~~-~~~~~l~~~~-~dg~i~i~d~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~ 311 (507)
...... .......++ +.+..++... .++.|+++|......... .....-.....+ +++++.|+.+.
T Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 433321 112223333 3444444444 588999999765320010 000111234555 78888877776
Q ss_pred --CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee--eeecC-CCeEEE
Q psy8285 312 --NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC--HVKTD-SQVTSI 386 (507)
Q Consensus 312 --d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~~-~~i~~~ 386 (507)
.+.|..+++...........+. .......++++++| +++++..+ .+.|.++|.. ++... .+... ...+++
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG-~l~va~~~--~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~ 260 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEG-NLYGATHI--YNSVVRIAPD-RSTTIIAQAEQGVIGSTAV 260 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTC-CEEEECBT--TCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred CCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCC-CEEEEeCC--CCeEEEECCC-CCEEEEeecccccCCceEE
Confidence 3899999987521111112221 11345779999998 45555543 7889999975 65532 33333 568999
Q ss_pred EEC---CCCCeEEEE
Q psy8285 387 LWS---EQYRELVTS 398 (507)
Q Consensus 387 ~~s---~~~~~l~~~ 398 (507)
+|. |+++.|+++
T Consensus 261 a~~g~~~d~~~LyVt 275 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVV 275 (306)
T ss_dssp EECCSTTTTTEEEEE
T ss_pred EEecccCCCCEEEEE
Confidence 998 898888774
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-05 Score=78.86 Aligned_cols=253 Identities=15% Similarity=0.074 Sum_probs=149.3
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCC--CceEE-EEEccCCCeEEEEeC-----CCCcEEEEeCCCceeEEEEee
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDN--AYISC-VAWKPRTTDLAVTNT-----CTEYIDLWHEQEERLIQKLRT 249 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~--~~v~~-~~~~~~~~~l~~~~~-----~dg~i~iwd~~~~~~~~~~~~ 249 (507)
+++++.++.|+.+|..+|+..-...... +. ..+.+ .... ++ .++++++ .+|.|+-+|..+++.+..+..
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~-~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSD-IKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCC-GGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCC-CCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 6667789999999999999876655432 10 01111 1111 33 5555512 379999999999999877664
Q ss_pred cCcc-------------------------------------EE-EEEe--eCCEEEEEecC----------------CeE
Q psy8285 250 HMHQ-------------------------------------VI-AMCW--NGNLLSCGTIG----------------GNI 273 (507)
Q Consensus 250 ~~~~-------------------------------------v~-~~~~--~~~~l~~~~~d----------------g~i 273 (507)
.... ++ .+++ ....++.+..+ +.|
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv 280 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceE
Confidence 2211 00 2233 45566766654 379
Q ss_pred EEEECCCCCcCceeeec-CC--------CceEEEEEc-CCC---CEEEEEe-CCcEEEEEcCCCCCCCCeeeecCC----
Q psy8285 274 LHYDVRTHSDYPTAITR-EG--------DVVCGLKWS-PNG---RYLASGS-NNTVKIWDFRQLDAKRPQVNNQCH---- 335 (507)
Q Consensus 274 ~i~d~~~~~~~~~~~~~-~~--------~~v~~~~~~-~~~---~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~---- 335 (507)
..+|.++++..-..... |. .++. +... .+| +.++.++ +|.++++|.+++ +.+......
T Consensus 281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG---~~lw~~~~~~~~~ 356 (599)
T 1w6s_A 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDG---ALVSANKLDDTVN 356 (599)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTC---CEEEEEESSTTCC
T ss_pred EEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCC---CEeecccccCCcc
Confidence 99999988732222111 11 1222 2222 467 4566666 599999999887 443322210
Q ss_pred ---------CCCe--------------------------eEEEEccCCCcEEEEEc------------------------
Q psy8285 336 ---------LSAV--------------------------KAIAWCPWEPTLLATGG------------------------ 356 (507)
Q Consensus 336 ---------~~~v--------------------------~~~~~~~~~~~~~~~~~------------------------ 356 (507)
..++ ..++++|+...+++...
T Consensus 357 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 436 (599)
T 1w6s_A 357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATL 436 (599)
T ss_dssp SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred cccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccc
Confidence 0011 24566776544433210
Q ss_pred ------cC------CCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccc
Q psy8285 357 ------GI------CDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQ 424 (507)
Q Consensus 357 ------~~------~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~ 424 (507)
.. ..+.|..||+.+++.+.......+...-.....+..+++ ++.|+.++.||.++++.+.+++...
T Consensus 437 ~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~--gt~dg~l~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 437 NMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFY--GTLDGYLKARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp EEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSS
T ss_pred eeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEE--ECCCCeEEEEECCCCCEEEEeeCCC
Confidence 00 257899999999998887764432221112235677777 7889999999999999999886543
Q ss_pred cce-eEEEECCCCCEE
Q psy8285 425 ERI-LSAVLSPDQTCV 439 (507)
Q Consensus 425 ~~i-~~~~~s~~~~~l 439 (507)
..+ .-+.|..+|++.
T Consensus 515 g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 515 GAIGYPMTYTHKGTQY 530 (599)
T ss_dssp CCCSCCEEEEETTEEE
T ss_pred CcEeccEEEEeCCEEE
Confidence 222 224555677643
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.66 E-value=7.5e-05 Score=77.02 Aligned_cols=272 Identities=10% Similarity=0.001 Sum_probs=167.4
Q ss_pred ceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecC----CCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc
Q psy8285 167 YTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYP----TYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE 241 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~ 241 (507)
.|.++...+++ +..++.+ .|.+||..+++........ ......|.++...++|...+ + +..+-|.++|..+.
T Consensus 212 ~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-g-t~~~Gl~~~~~~~~ 288 (781)
T 3v9f_A 212 DVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-A-TELNGIMILDLQQN 288 (781)
T ss_dssp SEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-E-ESSSCEEEEETTCC
T ss_pred ceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-E-eCCCCeEEECCCCC
Confidence 46677777776 6666655 7999998877654332211 00346799999988876554 4 45466888998776
Q ss_pred eeEEEEe--------------ecCccEEEEEee-CCEEEEEecCCeEEEEECCCCCcCceeee----------cCCCceE
Q psy8285 242 RLIQKLR--------------THMHQVIAMCWN-GNLLSCGTIGGNILHYDVRTHSDYPTAIT----------REGDVVC 296 (507)
Q Consensus 242 ~~~~~~~--------------~~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~~~~v~ 296 (507)
+...... -....|.++..| ...|-.|+.++-|..++..... ...+. .....|.
T Consensus 289 ~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~v~ 366 (781)
T 3v9f_A 289 QFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPT--FHTWSYSPTQMNESSLSNKVVS 366 (781)
T ss_dssp ---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCS--CEEEC----CCCSSCCSSSCEE
T ss_pred eeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCc--ceeeccCccccccCCCCCcceE
Confidence 5332211 134568888884 3456677777778888877543 11111 1235689
Q ss_pred EEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeee----cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC
Q psy8285 297 GLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNN----QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 372 (507)
Q Consensus 297 ~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 372 (507)
++...+++++.+...++-+..||..+. ....+ ......|.++...+++ .+.+... ++-+..+|..+++
T Consensus 367 ~i~~d~~g~lWigt~~~Gl~~~~~~~~----~~~~~~~~~~~~~~~v~~i~~d~~g-~lWigt~---~~Gl~~~~~~~~~ 438 (781)
T 3v9f_A 367 SVCDDGQGKLWIGTDGGGINVFENGKR----VAIYNKENRELLSNSVLCSLKDSEG-NLWFGTY---LGNISYYNTRLKK 438 (781)
T ss_dssp EEEECTTSCEEEEEBSSCEEEEETTEE----EEECC-----CCCSBEEEEEECTTS-CEEEEET---TEEEEEECSSSCE
T ss_pred EEEEcCCCCEEEEeCCCcEEEEECCCC----eEEEccCCCCCCCcceEEEEECCCC-CEEEEec---cCCEEEEcCCCCc
Confidence 999888887665544577888987653 11111 1234678899888777 4555332 5678899987765
Q ss_pred eeeeee---cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc-----ccceeEEEECCCCCEEEEEeC
Q psy8285 373 EKCHVK---TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH-----QERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 373 ~~~~~~---~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~-----~~~i~~~~~s~~~~~l~s~~~ 444 (507)
...... ....|.++...+++...+. +. +-|..||..+++........ ...|.++...++|++.+ |+.
T Consensus 439 ~~~~~~~~~~~~~v~~i~~d~~g~lwig---t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~ 513 (781)
T 3v9f_A 439 FQIIELEKNELLDVRVFYEDKNKKIWIG---TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTF 513 (781)
T ss_dssp EEECCSTTTCCCCEEEEEECTTSEEEEE---ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EES
T ss_pred EEEeccCCCCCCeEEEEEECCCCCEEEE---EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEc
Confidence 433221 2357899999888876655 33 56889998765543322111 35689999999888665 444
Q ss_pred CCcEEEEecCCC
Q psy8285 445 DETISIWNCFPR 456 (507)
Q Consensus 445 dg~i~iw~~~~~ 456 (507)
++-+..|+..+.
T Consensus 514 ~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 514 GGGVGIYTPDMQ 525 (781)
T ss_dssp SSCEEEECTTCC
T ss_pred CCCEEEEeCCCC
Confidence 334777876544
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=0.00026 Score=64.59 Aligned_cols=275 Identities=8% Similarity=0.079 Sum_probs=188.2
Q ss_pred eeeCCCCEEEEE----cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 171 LDWGYHDTLAVA----LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 171 ~~~s~~~~~~~~----~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
+.+..|.++++- .+.+|.|.|+.+++........ .-+.-.+|..+.+|.- ...++.|+|+++...++.
T Consensus 30 ~TmESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~------AdsAIMnP~~~iiALr--ag~~lQiFnle~K~klks 101 (494)
T 1bpo_A 30 LTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS------ADSAIMNPASKVIALK--AGKTLQIFNIEMKSKMKA 101 (494)
T ss_dssp EEEEETTEEEEEECCTTCCEEEEEETTSTTSCEEEECC------CSEEEECSSSSCEEEE--ETTEEEEEETTTTEEEEE
T ss_pred eeeecCceEEEEecCCCCCeEEEEECCCCCcceecccc------cceeeeCCCCcEEEEe--cCCeEEEEchHHhhhhcc
Confidence 444445555553 3447888888886654443332 2345568888888876 378999999999888887
Q ss_pred EeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCC----CceEEEEEcCCCCEEEEEe--------CC
Q psy8285 247 LRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREG----DVVCGLKWSPNGRYLASGS--------NN 313 (507)
Q Consensus 247 ~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~--------d~ 313 (507)
..- ...|.--.| +.+.|+..+ +..|+-|++.....+.+.+..|. ..|..-..+++.++++..+ .|
T Consensus 102 ~~~-~e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G 179 (494)
T 1bpo_A 102 HTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 179 (494)
T ss_dssp EEC-SSCCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEE
T ss_pred eec-CCCceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccc
Confidence 764 345666677 888888877 56899999987655666666553 4577778899999876432 27
Q ss_pred cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccC--CCcEEEEEcc-CCCCeEEEEeCCCC---Ce-----eeee--ec-
Q psy8285 314 TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW--EPTLLATGGG-ICDQTVRLWNSMNG---KE-----KCHV--KT- 379 (507)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~-~~d~~i~i~d~~~~---~~-----~~~~--~~- 379 (507)
.+.+|..+. +..+.+++|.+....+....+ ...+++.+.. ...+.++|.++... .+ ...+ ..
T Consensus 180 ~mQLYS~er----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe 255 (494)
T 1bpo_A 180 AMQLYSVDR----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE 255 (494)
T ss_dssp EEEEEESTT----CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTT
T ss_pred eEEEeeccc----cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcc
Confidence 889999886 477778888766655544321 1235554442 11378999998543 11 1111 11
Q ss_pred --CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 380 --DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 380 --~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
..-..++..++....++. -+.-|.|++||+.++.++..-+--...|..-+-+....=++.....|.|.--.+....
T Consensus 256 ~~~DFPvamqvs~kygviyv--iTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 256 AQNDFPVAMQISEKHDVVFL--ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp STTCCEEEEEEETTTTEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred cccCceeEEEecccCCEEEE--EecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 134678889988888887 5688999999999999998877666677666655555556667788988888887766
Q ss_pred cccc
Q psy8285 458 KKRK 461 (507)
Q Consensus 458 ~~~~ 461 (507)
.+.-
T Consensus 334 ivpy 337 (494)
T 1bpo_A 334 IIPY 337 (494)
T ss_dssp HHHH
T ss_pred chhh
Confidence 5543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.64 E-value=4.5e-06 Score=84.12 Aligned_cols=252 Identities=9% Similarity=0.041 Sum_probs=140.9
Q ss_pred eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE--eecCccEEEEEe-eCC
Q psy8285 186 SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL--RTHMHQVIAMCW-NGN 262 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~-~~~ 262 (507)
.+.+||+.+++...+..++..+.....++++.++++.++++|..+..+.+||..+.+-...- ............ +++
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~ 299 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 299 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCe
Confidence 68999999888665544432133344567888899988888556678999999876543321 112222344555 889
Q ss_pred EEEEEe-cC-----CeEEEEECCCCCcCceeeec-----CCCceEEEEEcCCCCEEEEEe----------CCcEEEEEcC
Q psy8285 263 LLSCGT-IG-----GNILHYDVRTHSDYPTAITR-----EGDVVCGLKWSPNGRYLASGS----------NNTVKIWDFR 321 (507)
Q Consensus 263 ~l~~~~-~d-----g~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~----------d~~i~i~d~~ 321 (507)
+++.|+ .+ ..+.+||..+.. ...+.. ....-....+..+++.++.++ ...+..||..
T Consensus 300 iyv~GG~~~~~~~~~~~e~yd~~t~~--W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~ 377 (656)
T 1k3i_A 300 VFTIGGSWSGGVFEKNGEVYSPSSKT--WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377 (656)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTTE--EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred EEEEeCcccCCcccccceEeCCCCCc--ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence 999988 34 468999998754 111100 000000011223444444443 2457888887
Q ss_pred CCCCCCCeeeecCCC---------CCeeEEEEccCCCcEEEEEccCC-C-----C---eEEEEeCCCCCeeeee----ec
Q psy8285 322 QLDAKRPQVNNQCHL---------SAVKAIAWCPWEPTLLATGGGIC-D-----Q---TVRLWNSMNGKEKCHV----KT 379 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~~~~~~~~~-d-----~---~i~i~d~~~~~~~~~~----~~ 379 (507)
.. ........+. ..-.++.|...+..+++.|+... + . .+.+||..+.+-.... ..
T Consensus 378 ~~---~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~ 454 (656)
T 1k3i_A 378 GS---GDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF 454 (656)
T ss_dssp TT---CEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS
T ss_pred Cc---ceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC
Confidence 65 2111111111 12234455444557887776310 1 1 6888888776543332 11
Q ss_pred CCCeEEEEECCCCCeEEEEeccCC-----------CeEEEEeCCCccEE--EEeeccccceeEEEECCCCCEEEEEeC
Q psy8285 380 DSQVTSILWSEQYRELVTSHGKQD-----------CSLKMWEYPRLHLI--EELKIHQERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 380 ~~~i~~~~~s~~~~~l~~~~g~~d-----------~~i~v~d~~~~~~~--~~~~~~~~~i~~~~~s~~~~~l~s~~~ 444 (507)
...-.++...|+++.+++ |+.+ ..+.+||..+.+-. ..+......-....+.|+++.++.|+.
T Consensus 455 ~R~~~~~~~l~~g~i~v~--GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 455 ARTFHTSVVLPDGSTFIT--GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCBSCEEEECTTSCEEEE--CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CcccCCeEECCCCCEEEE--CCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 122345567789998888 5433 46899998765422 212211222233456789999999885
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=2.9e-05 Score=76.48 Aligned_cols=257 Identities=11% Similarity=0.023 Sum_probs=151.5
Q ss_pred CCEEEEEcCCeEEEEECCCCceeEEEecCCCCCC--ceE-EEEEcc---CCC-eEEEEeC------CCCcEEEEeCCCce
Q psy8285 176 HDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNA--YIS-CVAWKP---RTT-DLAVTNT------CTEYIDLWHEQEER 242 (507)
Q Consensus 176 ~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~--~v~-~~~~~~---~~~-~l~~~~~------~dg~i~iwd~~~~~ 242 (507)
+.+++++.++.|..+|.++|+..-...... +.. .+. ...... +++ .++++ + .+|.|.-+|..+++
T Consensus 118 ~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~-~~~~~~~~~sP~v~~~~~~G~~~v~vg-~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 118 DKVFFGTLDASVVALNKNTGKVVWKKKFAD-HGAGYTMTGAPTIVKDGKTGKVLLIHG-SSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECSC-GGGTCBCCSCCEEEECTTTCCEEEEEC-CBCGGGCCBCEEEEECTTTCC
T ss_pred CEEEEEeCCCEEEEEECCCCCEEeeecCCC-CCcCcccccCCEEeCCCcCCcEEEEEe-ccccccCCCCEEEEEECCCCC
Confidence 347777889999999999999876665432 110 111 111111 233 45554 3 37899999999999
Q ss_pred eEEEEeecCccE-----------------------------------------EEEEe--eCCEEEEEec----------
Q psy8285 243 LIQKLRTHMHQV-----------------------------------------IAMCW--NGNLLSCGTI---------- 269 (507)
Q Consensus 243 ~~~~~~~~~~~v-----------------------------------------~~~~~--~~~~l~~~~~---------- 269 (507)
.+.........+ ..+++ ...+++.+..
T Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r 275 (582)
T 1flg_A 196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR 275 (582)
T ss_dssp EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence 887654311100 01233 2456665552
Q ss_pred ----------C----CeEEEEECCCCCcCceeee-cCC--------CceEEEEEc-CCCC---EEEEEe-CCcEEEEEcC
Q psy8285 270 ----------G----GNILHYDVRTHSDYPTAIT-REG--------DVVCGLKWS-PNGR---YLASGS-NNTVKIWDFR 321 (507)
Q Consensus 270 ----------d----g~i~i~d~~~~~~~~~~~~-~~~--------~~v~~~~~~-~~~~---~l~~~~-d~~i~i~d~~ 321 (507)
| +.|..+|.++++..-.... .|. .++. +... .+|+ .++.++ +|.++++|.+
T Consensus 276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 2 5799999998874322211 121 1221 2222 4674 566676 5999999998
Q ss_pred CCCCCCCeeeecCCC-------------CC--------------------------------eeEEEEccCCCcEEEEEc
Q psy8285 322 QLDAKRPQVNNQCHL-------------SA--------------------------------VKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~-------------~~--------------------------------v~~~~~~~~~~~~~~~~~ 356 (507)
++ +.+....... .+ -..++++|+...+++...
T Consensus 355 tG---~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~ 431 (582)
T 1flg_A 355 NG---KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPAN 431 (582)
T ss_dssp TC---CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEE
T ss_pred CC---CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEech
Confidence 87 3333222110 00 013566776555544321
Q ss_pred ------------------------------cCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeE
Q psy8285 357 ------------------------------GICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSL 406 (507)
Q Consensus 357 ------------------------------~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i 406 (507)
...++.|..||+.+++.+...........-.....+..+++ ++.|+.+
T Consensus 432 ~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~--g~~dg~l 509 (582)
T 1flg_A 432 HWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFT--GTGDGYF 509 (582)
T ss_dssp CEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEE--ECTTSEE
T ss_pred hcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEE--ECCCCcE
Confidence 01268899999999998877765533222122224667777 7889999
Q ss_pred EEEeCCCccEEEEeeccccce-eEEEECCCCCEEE
Q psy8285 407 KMWEYPRLHLIEELKIHQERI-LSAVLSPDQTCVA 440 (507)
Q Consensus 407 ~v~d~~~~~~~~~~~~~~~~i-~~~~~s~~~~~l~ 440 (507)
+.||.++++.+.+++...... .-+.|..+|++.+
T Consensus 510 ~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 510 KAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp EEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 999999999999887643322 1256667876443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.63 E-value=0.0002 Score=67.12 Aligned_cols=234 Identities=13% Similarity=-0.007 Sum_probs=147.6
Q ss_pred CeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEee--CCEEEEE-ecCCeEEEEECCCCC---cCceeeecCCCc
Q psy8285 221 TDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG-TIGGNILHYDVRTHS---DYPTAITREGDV 294 (507)
Q Consensus 221 ~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~-~~dg~i~i~d~~~~~---~~~~~~~~~~~~ 294 (507)
.+|+.+ ....|+..++........+ .....+..++|+ +..|+.. ...+.|+.+++.... ............
T Consensus 84 ~~ll~~--~~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~ 160 (400)
T 3p5b_L 84 AYLFFT--NRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 160 (400)
T ss_dssp CEEEEE--ETTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSC
T ss_pred ceeEEe--ccceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCC
Confidence 355554 4578888888766544443 345567888984 4445444 456789999887522 122233334456
Q ss_pred eEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC
Q psy8285 295 VCGLKWSPNGRYLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 372 (507)
Q Consensus 295 v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 372 (507)
...+++.+.++.|+.+. . +.|.+.++... .....+.........+++.|.+..++.+..+ ..+.|...++....
T Consensus 161 p~glavD~~~~~lY~~d~~~~~I~~~~~~g~---~~~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 161 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVD 236 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEECTTTC---SEEEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTSCS
T ss_pred cccEEEEecCCceEEEECCCCeEEEEeCCCC---ceEEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCCCc
Confidence 78899998666666555 4 89999998754 2222333344567899999987788877643 13789999986544
Q ss_pred eeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec--cccceeEEEECCCCCEEEEEeCCCcEE
Q psy8285 373 EKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI--HQERILSAVLSPDQTCVAAASADETIS 449 (507)
Q Consensus 373 ~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~s~~~dg~i~ 449 (507)
....+... .....+++++++..|+.+ -...+.|..+|+........+.. ......++++. .+..+++-...+.|.
T Consensus 237 ~~~~~~~~l~~P~glavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~ 314 (400)
T 3p5b_L 237 IYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 314 (400)
T ss_dssp CEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEE
T ss_pred cEEEEECCCCceEEEEEEeCCCEEEEE-ECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEE
Confidence 43333333 578999999988888775 45678999999865433222222 12334566662 334555666678899
Q ss_pred EEecCCCCccccee
Q psy8285 450 IWNCFPRDKKRKAR 463 (507)
Q Consensus 450 iw~~~~~~~~~~~~ 463 (507)
.++..+++....+.
T Consensus 315 ~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 315 SANRLTGSDVNLLA 328 (400)
T ss_dssp EEESSSCCCCEEEE
T ss_pred EEEcCCCCceEEEe
Confidence 99977776655443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.60 E-value=0.00028 Score=72.74 Aligned_cols=276 Identities=6% Similarity=-0.074 Sum_probs=169.8
Q ss_pred ceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCC----CCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc
Q psy8285 167 YTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPT----YDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE 241 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~ 241 (507)
.|.++...+++ +.+++.++.|..|+..+++......... .....|.++...+++...+.+ .+ -+.+||..++
T Consensus 164 ~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt--~~-Gl~~~d~~~~ 240 (781)
T 3v9f_A 164 QTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGT--SK-GLALFNANTE 240 (781)
T ss_dssp CEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEE--TT-EEEEEETTTT
T ss_pred ceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEe--CC-cHheECCCCC
Confidence 35666666666 6666666689999988776543321100 023569999998888766654 44 6889998776
Q ss_pred eeEEEEe-------ecCccEEEEEee-CCEEEEEecCCeEEEEECCCCCcCceee-------------ecCCCceEEEEE
Q psy8285 242 RLIQKLR-------THMHQVIAMCWN-GNLLSCGTIGGNILHYDVRTHSDYPTAI-------------TREGDVVCGLKW 300 (507)
Q Consensus 242 ~~~~~~~-------~~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------~~~~~~v~~~~~ 300 (507)
+...... .....|.++..+ ...|..|+..+-|.++|..+........ ......|.++..
T Consensus 241 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~ 320 (781)
T 3v9f_A 241 TFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQ 320 (781)
T ss_dssp EEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEE
T ss_pred cEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEE
Confidence 5432211 124568888883 5567777775678889987654111110 112456899999
Q ss_pred cCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeec----------CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC
Q psy8285 301 SPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQ----------CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN 370 (507)
Q Consensus 301 ~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 370 (507)
.++|.+-+...++-|..++.... ....+. .....|.++...+++. +.+... ++-|..||..+
T Consensus 321 D~~g~lWigt~~~Gl~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~---~~Gl~~~~~~~ 392 (781)
T 3v9f_A 321 DSFNNIWIGTWGGGINFISNAPP----TFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTD---GGGINVFENGK 392 (781)
T ss_dssp CSSCCEEEEEBSSCEEEECSSCC----SCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEB---SSCEEEEETTE
T ss_pred eCCCCEEEEecCCeEEEeCCCCC----cceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeC---CCcEEEEECCC
Confidence 99887655544678888887654 222221 1235689999888774 444332 56688898765
Q ss_pred CCeeeeee----cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee--ccccceeEEEECCCCCEEEEEeC
Q psy8285 371 GKEKCHVK----TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK--IHQERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 371 ~~~~~~~~----~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~~~~s~~~~~l~s~~~ 444 (507)
++...... ....|.++...+++...+. +.++-|..+|..+++...... .....|.++...+++.+.+ |+.
T Consensus 393 ~~~~~~~~~~~~~~~~v~~i~~d~~g~lWig---t~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~ 468 (781)
T 3v9f_A 393 RVAIYNKENRELLSNSVLCSLKDSEGNLWFG---TYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH 468 (781)
T ss_dssp EEEECC-----CCCSBEEEEEECTTSCEEEE---ETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET
T ss_pred CeEEEccCCCCCCCcceEEEEECCCCCEEEE---eccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC
Confidence 43322111 1256889998888876654 455678999987665432211 1345789999888887555 454
Q ss_pred CCcEEEEecCCCCc
Q psy8285 445 DETISIWNCFPRDK 458 (507)
Q Consensus 445 dg~i~iw~~~~~~~ 458 (507)
+-|..|+..+.+.
T Consensus 469 -~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 469 -AGVFVIDLASKKV 481 (781)
T ss_dssp -TEEEEEESSSSSC
T ss_pred -CceEEEeCCCCeE
Confidence 4588888776543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.51 E-value=9.9e-05 Score=69.86 Aligned_cols=233 Identities=12% Similarity=0.144 Sum_probs=133.8
Q ss_pred eeeeeCCC--C-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCC----cEEEEeCCCc
Q psy8285 169 SGLDWGYH--D-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTE----YIDLWHEQEE 241 (507)
Q Consensus 169 ~~~~~s~~--~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg----~i~iwd~~~~ 241 (507)
..|+++|+ + ++++...+.|+.+|+.++....+.. .......++|+++++.|+++...++ .+..++. .+
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~----~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS----GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC----CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec----CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 45888872 4 5555544889999998777655443 3456889999999997777723222 2333443 23
Q ss_pred eeE--EEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-C-Cc
Q psy8285 242 RLI--QKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-N-NT 314 (507)
Q Consensus 242 ~~~--~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~~ 314 (507)
... ..+.. ......+++ ++.++++-..++.|..++....................++|+|++++|+.+. . +.
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 221 22222 222344555 3556666667789999998865421111111223467899999999766665 4 89
Q ss_pred EEEEEcCCCC-CCCCeeeecCC---------------CCCee-EEEEc--------cCCCcEEEEEccCCCCeEEEEeCC
Q psy8285 315 VKIWDFRQLD-AKRPQVNNQCH---------------LSAVK-AIAWC--------PWEPTLLATGGGICDQTVRLWNSM 369 (507)
Q Consensus 315 i~i~d~~~~~-~~~~~~~~~~~---------------~~~v~-~~~~~--------~~~~~~~~~~~~~~d~~i~i~d~~ 369 (507)
|..++..... .......+.+. -.... .+... +++ .++++..+ .+.|+.++ .
T Consensus 294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g-~lyvaD~~--n~~I~~i~-~ 369 (430)
T 3tc9_A 294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY-DFYFCDRE--NHCIRILT-P 369 (430)
T ss_dssp EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE-EEEEEEGG--GTEEEEEC-T
T ss_pred EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC-eEEEEECC--CcEEEEEC-C
Confidence 9998876320 00011111110 11223 45543 223 56666554 78899998 4
Q ss_pred CCCeeeeeec---------C---------CCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 370 NGKEKCHVKT---------D---------SQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 370 ~~~~~~~~~~---------~---------~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
+++....... . .....++++|++..|+++ -..++.|+.++.+
T Consensus 370 ~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa-D~~n~rIr~i~~e 429 (430)
T 3tc9_A 370 QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIG-DRENRRIRKIGYE 429 (430)
T ss_dssp TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEE-EGGGTEEEEEEEC
T ss_pred CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEE-ECCCCeEEEEccC
Confidence 5544333221 1 247899999964444443 4566788877653
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.50 E-value=5e-07 Score=91.09 Aligned_cols=243 Identities=8% Similarity=-0.015 Sum_probs=144.7
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC----ceeEEEEeecCcc
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE----ERLIQKLRTHMHQ 253 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~ 253 (507)
++..+..+.|+..++.+.+...+.. ....+..++|.+.+..|+.+....+.|+.+++.. ......+......
T Consensus 379 ~ll~~~~~~I~~id~~~~~~~~~~~----~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~ 454 (699)
T 1n7d_A 379 YLFFTNRHEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 454 (699)
T ss_dssp CBCCCCTTC-CEECTTSCCEECCSC----CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--
T ss_pred eEEecCccceEEEeCCCCcceeeec----cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCC
Confidence 4444556788888887766543332 3345678999998888887745567899999875 2222222111112
Q ss_pred EEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCCCCC
Q psy8285 254 VIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--N-NTVKIWDFRQLDAKR 327 (507)
Q Consensus 254 v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~~~~~ 327 (507)
...+++ .++++++-...+.|.++++.... ....+.........+++.|.+.+|+.+. . +.|..+++... .
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~---~ 530 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---D 530 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC---C
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCc-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC---C
Confidence 334454 34455554566889999987643 2222222234457789999766555544 3 67888877643 1
Q ss_pred CeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECCCCCeEEEEeccCCC
Q psy8285 328 PQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSEQYRELVTSHGKQDC 404 (507)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~g~~d~ 404 (507)
..............|+|+|++..|+++... .+.|..+++........+... .....+++.. ..|+.+ ....+
T Consensus 531 ~~~l~~~~l~~PnGlavd~~~~~LY~aD~~--~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~--~~lywt-d~~~~ 605 (699)
T 1n7d_A 531 IYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWT-DIINE 605 (699)
T ss_dssp CCEESCSSCSSCCCEEECTTTCCEEEEETT--TTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET--TEEEEE-CSTTT
T ss_pred eeEEEeCCCCCccEEEEeccCCEEEEEecC--CCeEEEEccCCCceEEEEecCCcCCCceEeEEEC--CEEEEE-eCCCC
Confidence 111111223456789999998888888765 789999998654333222211 2344555544 355553 45678
Q ss_pred eEEEEeCCCccEEEEeeccccceeEEEEC
Q psy8285 405 SLKMWEYPRLHLIEELKIHQERILSAVLS 433 (507)
Q Consensus 405 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~s 433 (507)
.|..++..+++.+..+.........|++.
T Consensus 606 ~V~~~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 606 AIFSANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp CEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred eEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence 99999988888887775433334455443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.49 E-value=6.7e-05 Score=71.05 Aligned_cols=234 Identities=11% Similarity=0.085 Sum_probs=136.4
Q ss_pred CceEEEEEcc-CCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEec-CC----eEEEEECCC
Q psy8285 209 AYISCVAWKP-RTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTI-GG----NILHYDVRT 280 (507)
Q Consensus 209 ~~v~~~~~~~-~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-dg----~i~i~d~~~ 280 (507)
.....++++| ++..|+++ ...+.|+.+|+..+...... ........+++ +++.|+.+.. ++ .+..++...
T Consensus 137 ~~P~~lavdp~~~g~Lyv~-d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g 214 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLV-GEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES 214 (430)
T ss_dssp SCCCEEEEETTEEEEEEEE-EBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred CCCCEEEECCCCCCeEEEE-eCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence 3467899998 46667776 44488999998876654433 34556778888 5775655554 22 344444332
Q ss_pred CCcCceeeecCCCceEEEEEcC-CCCEEEEEe-CCcEEEEEcCCCCCCCCeeeec-CCCCCeeEEEEccCCCcEEEEEcc
Q psy8285 281 HSDYPTAITREGDVVCGLKWSP-NGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQ-CHLSAVKAIAWCPWEPTLLATGGG 357 (507)
Q Consensus 281 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~ 357 (507)
.......+.. ......++++| ++.++++-. ++.|..++.... ....... ........++|+|++++++++...
T Consensus 215 ~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~---~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 215 GFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ---ETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp TSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT---EEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred ceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---cEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence 2111122222 23456788999 565555444 489999998754 2111111 122356789999999867777654
Q ss_pred CCCCeEEEEeCCC--CCe--eeeeecC----------------CCeE-EEEEC--------CCCCeEEEEeccCCCeEEE
Q psy8285 358 ICDQTVRLWNSMN--GKE--KCHVKTD----------------SQVT-SILWS--------EQYRELVTSHGKQDCSLKM 408 (507)
Q Consensus 358 ~~d~~i~i~d~~~--~~~--~~~~~~~----------------~~i~-~~~~s--------~~~~~l~~~~g~~d~~i~v 408 (507)
.+.|..++... ++. ...+... .... .++.. ++|..+++ -..++.|+.
T Consensus 291 --~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyva--D~~n~~I~~ 366 (430)
T 3tc9_A 291 --QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFC--DRENHCIRI 366 (430)
T ss_dssp --TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEE--EGGGTEEEE
T ss_pred --CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEE--ECCCcEEEE
Confidence 88999987653 221 1112110 1233 45553 34555555 456778999
Q ss_pred EeCCCccEEEEeecc---------c---------cceeEEEECCC-CCEEEEEeCCCcEEEEecC
Q psy8285 409 WEYPRLHLIEELKIH---------Q---------ERILSAVLSPD-QTCVAAASADETISIWNCF 454 (507)
Q Consensus 409 ~d~~~~~~~~~~~~~---------~---------~~i~~~~~s~~-~~~l~s~~~dg~i~iw~~~ 454 (507)
++ .+++... +.+. . ..-..++++|+ +.++++-.....|+.++++
T Consensus 367 i~-~~G~v~~-~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 367 LT-PQGRVTT-FAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EC-TTSEEEE-EEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EC-CCCcEEE-EEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 98 4554332 2221 1 13678999985 5555555556778877754
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.9e-05 Score=79.37 Aligned_cols=239 Identities=10% Similarity=-0.026 Sum_probs=130.7
Q ss_pred ceeeeeeC-CCC-EEEEE--cCC----eEEEEECCCC-ceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC-----Cc
Q psy8285 167 YTSGLDWG-YHD-TLAVA--LDT----SVYTWNTKTN-KTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT-----EY 232 (507)
Q Consensus 167 ~i~~~~~s-~~~-~~~~~--~~~----~i~iw~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~ 232 (507)
.+....|| ||+ .++.+ .+| .|+++|+.++ +.... .+. .....++|+||++.|+.. ..+ ..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~----~~~~~~~WspDg~~l~y~-~~d~~~~~~~ 248 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVS----GTNGEIVWGPDHTSLFYV-TKDETLRENK 248 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEE----EECSCCEECSSTTEEEEE-EECTTCCEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-ccc----CceeeEEEecCCCEEEEE-EECCCCCCCE
Confidence 57789999 998 55543 222 4999999988 63210 111 113468899999988887 444 26
Q ss_pred EEEEeCCCcee--EEEEee-cCccEEEEEe--eCCEEEEEec---CCeEEEEECCCCCcCc--eee-ecCCCceEEEEEc
Q psy8285 233 IDLWHEQEERL--IQKLRT-HMHQVIAMCW--NGNLLSCGTI---GGNILHYDVRTHSDYP--TAI-TREGDVVCGLKWS 301 (507)
Q Consensus 233 i~iwd~~~~~~--~~~~~~-~~~~v~~~~~--~~~~l~~~~~---dg~i~i~d~~~~~~~~--~~~-~~~~~~v~~~~~~ 301 (507)
|.++++.++.. ...+.. .......+.| |+++|+.... ...|+++|+.++.... ..+ ........++.|+
T Consensus 249 v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~ 328 (751)
T 2xe4_A 249 VWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH 328 (751)
T ss_dssp EEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE
T ss_pred EEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee
Confidence 88888877542 223322 2233456667 7888777653 3468889988753222 223 2334455566655
Q ss_pred CCCCEEEEEe-C----CcEEEEEcCCCCCCCCeee-ecCCCCCeeEEEEccCCCcEEEEEccCCCC--eEEEEeC-----
Q psy8285 302 PNGRYLASGS-N----NTVKIWDFRQLDAKRPQVN-NQCHLSAVKAIAWCPWEPTLLATGGGICDQ--TVRLWNS----- 368 (507)
Q Consensus 302 ~~~~~l~~~~-d----~~i~i~d~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~----- 368 (507)
..+.+++... + ..|..+|+.+. ..... +..+...+.--.+++.+..++++... ++ .|.++|+
T Consensus 329 ~g~~l~~~t~~~~a~~~~L~~~d~~~~---~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~--~g~~~l~~~dl~~~~~ 403 (751)
T 2xe4_A 329 GTSHLVILTNEGGAVNHKLLIAPRGQP---SDWSHVLVDHSEDVFMESIAVRSNYLVVAGRR--AGLTRIWTMMADSQDG 403 (751)
T ss_dssp TTTEEEEEECTTTCTTCEEEEEETTST---TCCCCEEECCCSSEEEEEEEECSSEEEEEEEE--TTEEEEEEEECCTTTS
T ss_pred eCCEEEEEeCCCCCCCcEEEEEcCCCc---ccceeeEECCCCCcEEEEEEEECCEEEEEEEe--CCEEEEEEEecccccc
Confidence 4444444433 2 25666676542 11122 22233332222344456677777654 55 4666775
Q ss_pred --CCCCeeeeeecC--CCeEEEEE----CCCCCeEEEEecc--CCCeEEEEeCCCccE
Q psy8285 369 --MNGKEKCHVKTD--SQVTSILW----SEQYRELVTSHGK--QDCSLKMWEYPRLHL 416 (507)
Q Consensus 369 --~~~~~~~~~~~~--~~i~~~~~----s~~~~~l~~~~g~--~d~~i~v~d~~~~~~ 416 (507)
.+++....+... ..+..+.+ ++++..++....+ .-..++.+|+.+++.
T Consensus 404 ~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 404 VFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp CCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred cccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 344413444333 22344433 4566655543222 235688888877653
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00078 Score=61.19 Aligned_cols=268 Identities=8% Similarity=0.017 Sum_probs=147.5
Q ss_pred ceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEec--CCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 167 YTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEY--PTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
.+.++.+.+++ .++++..+.|.. ....++.-..... .. ....+.++.|.+ + .++++ +..+.|.. ....++.
T Consensus 37 ~~~~v~~~~~~~~~~~G~~g~i~~-s~DgG~tW~~~~~~~~~-~~~~~~~i~~~~-~-~~~~~-g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLVGVNATLME-TRDGGQTWEPRTLVLDH-SDYRFNSVSFQG-N-EGWIV-GEPPIMLH-TTDGGQS 110 (327)
T ss_dssp CEEEEEESSSSCEEEEETTTEEEE-ESSTTSSCEECCCCCSC-CCCEEEEEEEET-T-EEEEE-EETTEEEE-ESSTTSS
T ss_pred cEEEEEECCCCcEEEEcCCCeEEE-eCCCCCCCeECCCCCCC-CCccEEEEEecC-C-eEEEE-ECCCeEEE-ECCCCCC
Confidence 46678886554 666777776633 3333432122221 11 345789999986 3 34444 45665444 2233433
Q ss_pred EEEEe---ecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEE
Q psy8285 244 IQKLR---THMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWD 319 (507)
Q Consensus 244 ~~~~~---~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d 319 (507)
-.... .+...+..+.+ +...++.++.+|.|.. ..+.++.-..........+..+.+.+++++++++.++.+..-+
T Consensus 111 W~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~ 189 (327)
T 2xbg_A 111 WSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTW 189 (327)
T ss_dssp CEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEE
T ss_pred ceECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEe
Confidence 33322 12345677776 4444445555665432 1222221122223445578899999999988877766655433
Q ss_pred cCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeee-----cCCCeEEEEECCCCCe
Q psy8285 320 FRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-----TDSQVTSILWSEQYRE 394 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~i~~~~~s~~~~~ 394 (507)
-..+...+.+ .......+..+.+.+++ .+++.+. ++.+++.+...++.-..+. ....+..+.+.+++..
T Consensus 190 d~gG~tW~~~--~~~~~~~~~~~~~~~~g-~~~~~~~---~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~ 263 (327)
T 2xbg_A 190 EPGQTAWEPH--NRTTSRRLHNMGFTPDG-RLWMIVN---GGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEV 263 (327)
T ss_dssp CTTCSSCEEE--ECCSSSCEEEEEECTTS-CEEEEET---TTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCE
T ss_pred CCCCCceeEC--CCCCCCccceeEECCCC-CEEEEeC---CceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEE
Confidence 2112111222 12345678899999987 5666554 7888776433343322222 1235889999988887
Q ss_pred EEEEeccCCCeEEEEeCCCccEEEEee---ccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 395 LVTSHGKQDCSLKMWEYPRLHLIEELK---IHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 395 l~~~~g~~d~~i~v~d~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
+++ +. ++.| .+....++.-..+. .....+.++.|.+++ .++.++.+|.|.-++
T Consensus 264 ~~~--g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 264 WLA--GG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp EEE--ES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred EEE--eC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 776 43 6666 34444444333333 123567888887555 466677889776655
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00045 Score=70.22 Aligned_cols=233 Identities=12% Similarity=-0.015 Sum_probs=144.9
Q ss_pred CeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEee---CCEEEEEecCCeEEEEECCCCC---cCceeeecCCCc
Q psy8285 221 TDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN---GNLLSCGTIGGNILHYDVRTHS---DYPTAITREGDV 294 (507)
Q Consensus 221 ~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~ 294 (507)
.+|+.+ ....|+..++...+....+. ....+..++|+ +.++++-...+.|+.+++.... .....+......
T Consensus 396 p~Ll~a--n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~ 472 (791)
T 3m0c_C 396 AYLFFT--NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 472 (791)
T ss_dssp CEEEEE--CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred cccccc--cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCC
Confidence 355554 45678888887655444433 44566788884 3445555556789989887531 122233324455
Q ss_pred eEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC
Q psy8285 295 VCGLKWSPNGRYLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 372 (507)
Q Consensus 295 v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 372 (507)
...|++.+.++.|+.+. . +.|.+.++... .....+.........|++.|.+.+|+.+..+ ..+.|...++....
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~---~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG~~ 548 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVD 548 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSS---SEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCC
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCC---eEEEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecCCCc
Confidence 67899998887777666 3 89999998754 2222222344568899999987788887643 12789999986554
Q ss_pred eeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc--ccceeEEEECCCCCEEEEEeCCCcEE
Q psy8285 373 EKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH--QERILSAVLSPDQTCVAAASADETIS 449 (507)
Q Consensus 373 ~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~s~~~dg~i~ 449 (507)
....+... .....|++++.+..|+.+ -...+.|..+++........+... -....+|++.. +.++++-...+.|.
T Consensus 549 ~~~lv~~~l~~P~GLavD~~~~~LYwa-D~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 549 IYSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIF 626 (791)
T ss_dssp EEEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEE
T ss_pred eEEEEeCCCCCceEEEEecCCCeEEEE-eCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEE
Confidence 44444433 578999999888888775 455678999998654443333321 12334566532 23334444567788
Q ss_pred EEecCCCCcccce
Q psy8285 450 IWNCFPRDKKRKA 462 (507)
Q Consensus 450 iw~~~~~~~~~~~ 462 (507)
..+..+++....+
T Consensus 627 ~~dk~tG~~~~~l 639 (791)
T 3m0c_C 627 SANRLTGSDVNLL 639 (791)
T ss_dssp EEETTTCCCCEEE
T ss_pred EEeCCCCcceEEe
Confidence 8887776555443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.5e-05 Score=78.00 Aligned_cols=240 Identities=11% Similarity=-0.015 Sum_probs=134.8
Q ss_pred ceEEEEEc-cCCCeEEEEeCCCC----cEEEEeCCCc-eeEE-EEeecCccEEEEEe--eCCEEEEEecC-----CeEEE
Q psy8285 210 YISCVAWK-PRTTDLAVTNTCTE----YIDLWHEQEE-RLIQ-KLRTHMHQVIAMCW--NGNLLSCGTIG-----GNILH 275 (507)
Q Consensus 210 ~v~~~~~~-~~~~~l~~~~~~dg----~i~iwd~~~~-~~~~-~~~~~~~~v~~~~~--~~~~l~~~~~d-----g~i~i 275 (507)
.+...+|| |||++|+.+.+.+| .|+++|+.++ +.+. .+.. ....+.| |++.|+....+ ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99999987634333 4999999988 6321 1111 1235667 77777777665 26888
Q ss_pred EECCCCCcCc-eeee-cCCCceEEEEEcCCCCEEEEEe---C-CcEEEEEcCCCCCCCC-eeee-cCCCCCeeEEEEccC
Q psy8285 276 YDVRTHSDYP-TAIT-REGDVVCGLKWSPNGRYLASGS---N-NTVKIWDFRQLDAKRP-QVNN-QCHLSAVKAIAWCPW 347 (507)
Q Consensus 276 ~d~~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~l~~~~---d-~~i~i~d~~~~~~~~~-~~~~-~~~~~~v~~~~~~~~ 347 (507)
+++.+..... ..+. ........+.|+|||++|+... . ..|+++|+.++.. .. +..+ .........+.|+.
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~-~~~~~~l~~~~~~~~~s~~~~~- 329 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA-HNTLEIVRPREKGVRYDVQMHG- 329 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT-CCCEEESSCCCTTCCEEEEEET-
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC-CceeEEeecCCCCceEEEeeee-
Confidence 8887754221 2222 2234466789999999887765 2 5788889876511 12 1222 22344555666543
Q ss_pred CCcEEEEEccC--CCCeEEEEeCCCC-Ceee-eeecCC--CeEEEEECCCCCeEEEEeccCCCe--EEEEeC-------C
Q psy8285 348 EPTLLATGGGI--CDQTVRLWNSMNG-KEKC-HVKTDS--QVTSILWSEQYRELVTSHGKQDCS--LKMWEY-------P 412 (507)
Q Consensus 348 ~~~~~~~~~~~--~d~~i~i~d~~~~-~~~~-~~~~~~--~i~~~~~s~~~~~l~~~~g~~d~~--i~v~d~-------~ 412 (507)
+..+++.+... ....|..+|+.++ +... .+.... .+..+.+. +..|+.. ...++. |.++++ .
T Consensus 330 g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~-~~~~g~~~l~~~dl~~~~~~~~ 406 (751)
T 2xe4_A 330 TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVA-GRRAGLTRIWTMMADSQDGVFK 406 (751)
T ss_dssp TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEE-EEETTEEEEEEEECCTTTSCCC
T ss_pred CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEE-EEeCCEEEEEEEeccccccccc
Confidence 55666665431 2347888887653 2222 233333 34455554 5566554 456664 566675 3
Q ss_pred CccEEEEeecc-ccceeEEEE----CCCCC-EEEEEeCC---CcEEEEecCCCC
Q psy8285 413 RLHLIEELKIH-QERILSAVL----SPDQT-CVAAASAD---ETISIWNCFPRD 457 (507)
Q Consensus 413 ~~~~~~~~~~~-~~~i~~~~~----s~~~~-~l~s~~~d---g~i~iw~~~~~~ 457 (507)
+++....+.-. ...+..+.+ ++++. ++++.+.. ..+..+|+.+++
T Consensus 407 ~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 407 AGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp TTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred CCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 43313333211 122333433 34554 44444332 457777776654
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.42 E-value=0.0002 Score=67.70 Aligned_cols=231 Identities=11% Similarity=0.026 Sum_probs=130.7
Q ss_pred eeeeeCCC---C-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCC-----cEEEEeCC
Q psy8285 169 SGLDWGYH---D-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTE-----YIDLWHEQ 239 (507)
Q Consensus 169 ~~~~~s~~---~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg-----~i~iwd~~ 239 (507)
..++|+|+ + ++.+-..+.|+.+++.+++...... .......++++++++ |+++ ...+ .+...+..
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~----~~~~P~giavd~dG~-lyVa-d~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT----NIGQCADVNFTLNGD-MVVV-DDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC----CCSCEEEEEECTTCC-EEEE-ECCSCTTSEEEEEECGG
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec----CCCCccEEEECCCCC-EEEE-cCCCCcccceEEEEECC
Confidence 46889984 5 4444334899999998887655433 445689999999999 5555 3321 23333322
Q ss_pred Ccee-EEEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCCCCcCceeee-cCCCceEEEEEcCCCCEEEEEe-C-
Q psy8285 240 EERL-IQKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRTHSDYPTAIT-REGDVVCGLKWSPNGRYLASGS-N- 312 (507)
Q Consensus 240 ~~~~-~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-d- 312 (507)
.+.. ...+. .......+++ ++.+.++-..++.|+.+|..++........ .....-..++|+|+++.|+.+. .
T Consensus 216 ~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~ 294 (433)
T 4hw6_A 216 SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK 294 (433)
T ss_dssp GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred CCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence 2111 01111 1222334555 355555555677899999876542111111 1122334699999999776666 3
Q ss_pred CcEEEEEcCCCCC-CCCeeeecC---------------CCCCeeEEEE---------ccCCCcEEEEEccCCCCeEEEEe
Q psy8285 313 NTVKIWDFRQLDA-KRPQVNNQC---------------HLSAVKAIAW---------CPWEPTLLATGGGICDQTVRLWN 367 (507)
Q Consensus 313 ~~i~i~d~~~~~~-~~~~~~~~~---------------~~~~v~~~~~---------~~~~~~~~~~~~~~~d~~i~i~d 367 (507)
+.|+.+++..... ......+.+ .-.....+++ .+++ .++++..+ .+.|+.++
T Consensus 295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g-~lyvaD~~--n~~I~~~~ 371 (433)
T 4hw6_A 295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEY-DFYFCDRD--SHTVRVLT 371 (433)
T ss_dssp TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCE-EEEEEETT--TTEEEEEC
T ss_pred CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCC-cEEEEECC--CCEEEEEC
Confidence 8899988753210 000111111 1123567888 5555 66666654 78999998
Q ss_pred CCCCCeeeeeec------------------CCCeEEEEEC-CCCCeEEEEeccCCCeEEEEeCC
Q psy8285 368 SMNGKEKCHVKT------------------DSQVTSILWS-EQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 368 ~~~~~~~~~~~~------------------~~~i~~~~~s-~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
. ++........ -.....++++ ++|..+++ -..++.|+.++++
T Consensus 372 ~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa--D~~n~rIr~i~~e 432 (433)
T 4hw6_A 372 P-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG--DCDNHRVRKIAPE 432 (433)
T ss_dssp T-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE--EGGGTEEEEEEEC
T ss_pred C-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE--eCCCCEEEEEecC
Confidence 5 5543322211 0236788998 55555554 4556778877653
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00033 Score=66.31 Aligned_cols=232 Identities=10% Similarity=0.024 Sum_probs=136.9
Q ss_pred ceEEEEEccC--CCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCC-----eEEEEECCC
Q psy8285 210 YISCVAWKPR--TTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGG-----NILHYDVRT 280 (507)
Q Consensus 210 ~v~~~~~~~~--~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg-----~i~i~d~~~ 280 (507)
....++|+|+ +..|+++ ...+.|+.+|..+++..... ........+++ +++ |+.+...+ .+...+...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4578999994 5567766 44489999999877655443 34455778888 577 44444321 233333322
Q ss_pred CCcCceeeecCCCceEEEEEcC-CCCEEEEEe-CCcEEEEEcCCCCCCCCeeee-c-CCCCCeeEEEEccCCCcEEEEEc
Q psy8285 281 HSDYPTAITREGDVVCGLKWSP-NGRYLASGS-NNTVKIWDFRQLDAKRPQVNN-Q-CHLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 281 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
.......+. .......++++| ++.++++-. ++.|+.+|..++ .....+ . +.......++|+|+++.++++..
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g---~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG---TLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC---CEEEEEEECSCCSSCEEEEECTTSSEEEEEET
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC---eEEEEEeccCCCCCcccEEEeCCCCEEEEEeC
Confidence 111111222 233456688999 555544444 488999998755 221121 1 11223347999999987877766
Q ss_pred cCCCCeEEEEeCC--CCCe--eeeeec----------------CCCeEEEEE---------CCCCCeEEEEeccCCCeEE
Q psy8285 357 GICDQTVRLWNSM--NGKE--KCHVKT----------------DSQVTSILW---------SEQYRELVTSHGKQDCSLK 407 (507)
Q Consensus 357 ~~~d~~i~i~d~~--~~~~--~~~~~~----------------~~~i~~~~~---------s~~~~~l~~~~g~~d~~i~ 407 (507)
. .+.|+.++.. ++.. ...+.. -.....+++ .++|..+++ -..++.|+
T Consensus 293 ~--~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyva--D~~n~~I~ 368 (433)
T 4hw6_A 293 G--KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFC--DRDSHTVR 368 (433)
T ss_dssp T--TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEE--ETTTTEEE
T ss_pred C--CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEE--ECCCCEEE
Confidence 4 7899998865 2321 111111 124677999 777776666 56678999
Q ss_pred EEeCCCccEEEEeecc------------------ccceeEEEEC-CCCCEEEEEeCCCcEEEEecC
Q psy8285 408 MWEYPRLHLIEELKIH------------------QERILSAVLS-PDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 408 v~d~~~~~~~~~~~~~------------------~~~i~~~~~s-~~~~~l~s~~~dg~i~iw~~~ 454 (507)
.++. ++.. ..+.+. -..-..|+++ +++.++++=...+.|+.++++
T Consensus 369 ~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 369 VLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 9984 5543 333221 1125678888 566655555566777777654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00038 Score=66.05 Aligned_cols=243 Identities=10% Similarity=0.001 Sum_probs=143.2
Q ss_pred ceEEEEEcc-CCCeEEEEeCCCCcEEEEeCCCceeEEEEeec---CccEEEEEe---------eCCEEEEEecCC-----
Q psy8285 210 YISCVAWKP-RTTDLAVTNTCTEYIDLWHEQEERLIQKLRTH---MHQVIAMCW---------NGNLLSCGTIGG----- 271 (507)
Q Consensus 210 ~v~~~~~~~-~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~v~~~~~---------~~~~l~~~~~dg----- 271 (507)
....|+|.| ++..|+++....+.|++.|+.++......... ......++| +++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899999 45666666234467999998887766555432 235788888 477666665543
Q ss_pred --eEEEEECCC-CCcCc----eeeecCCCceEEEEEcCCCCEEEEEe-C-CcEEEEEcC-------CCCCCCC-------
Q psy8285 272 --NILHYDVRT-HSDYP----TAITREGDVVCGLKWSPNGRYLASGS-N-NTVKIWDFR-------QLDAKRP------- 328 (507)
Q Consensus 272 --~i~i~d~~~-~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~-------~~~~~~~------- 328 (507)
.|.+++... +.... ..+... .....++++|++..|+.+. . +.|..+|+. ++....+
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266666443 12110 122221 2345678899666666555 4 889999997 4422000
Q ss_pred -eee-e-cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCC--CCCe--eeeeecC----------------CCeE-
Q psy8285 329 -QVN-N-QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSM--NGKE--KCHVKTD----------------SQVT- 384 (507)
Q Consensus 329 -~~~-~-~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~~--~~~~~~~----------------~~i~- 384 (507)
... + .+.....+.++|+|+++.++++... ...|+.++.. .+.. ...+.+. ....
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~--~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~ 376 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN--NHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ 376 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETT--TTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCC--CCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence 111 1 1123456799999999767776654 7899996643 3321 0122110 1244
Q ss_pred EEEEC-------CCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc------------------------ccceeEEEEC
Q psy8285 385 SILWS-------EQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH------------------------QERILSAVLS 433 (507)
Q Consensus 385 ~~~~s-------~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~------------------------~~~i~~~~~s 433 (507)
.++.. +++.++++ -..+..|+.++ .++. +.++.+. -..-..|+++
T Consensus 377 gv~vd~~~~~~~~~g~lyVa--D~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd 452 (496)
T 3kya_A 377 GVFVKNPDYTGEEEYDFYFV--DRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD 452 (496)
T ss_dssp EEEEECTTCCSSCCEEEEEE--EGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred EEEEccccccccCCCeEEEE--ECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence 45554 45555555 56688999999 4553 3444321 0125678898
Q ss_pred CC-CCEEEEEeCCCcEEEEecCCCCcc
Q psy8285 434 PD-QTCVAAASADETISIWNCFPRDKK 459 (507)
Q Consensus 434 ~~-~~~l~s~~~dg~i~iw~~~~~~~~ 459 (507)
++ +.++++=..+..|+.+++......
T Consensus 453 ~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 453 DVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 86 666666666788888888765443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00035 Score=69.27 Aligned_cols=231 Identities=9% Similarity=-0.042 Sum_probs=138.5
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee-EEEEeecCccEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL-IQKLRTHMHQVIA 256 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~ 256 (507)
++.-+....|+..++............ .......++|++.+..|+.+-...+.|..+++..... ...+.........
T Consensus 11 ~~~~~~~~~I~~i~~~~~~~~~~~~~~--~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~G 88 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGKENATIVVG--GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 88 (619)
T ss_dssp CEEEECSSBEEEECCC---------CB--CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEE
T ss_pred eEEEeccccEEEEeCCCCcceEEEEEc--CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCe
Confidence 556677888999998765322222222 3456889999998888887745678899999876532 2233333345666
Q ss_pred EEee--CC-EEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCCCCCCee
Q psy8285 257 MCWN--GN-LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--N-NTVKIWDFRQLDAKRPQV 330 (507)
Q Consensus 257 ~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~~~~~~~~ 330 (507)
+++| ++ +.++-...+.|.+.+++... ........-.....+++.|.+..|+.+. + +.|...++... ....
T Consensus 89 lAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~---~~~~ 164 (619)
T 3s94_A 89 LACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS---SRFI 164 (619)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC---SCEE
T ss_pred EEEEecCCEEEEEeCCCCEEEEEECCCCC-EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC---ceEE
Confidence 6663 44 45555567899999998643 2222323444567899999766665554 2 67777776643 2222
Q ss_pred eecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEE
Q psy8285 331 NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMW 409 (507)
Q Consensus 331 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~ 409 (507)
...........+++++++..++.+..+ .+.|..+|+............ .....+++..+ .|+.+ -...+.|...
T Consensus 165 l~~~~~~~P~Glald~~~~~LY~aD~~--~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~t-d~~~~~V~~~ 239 (619)
T 3s94_A 165 IINSEIYWPNGLTLDYEEQKLYWADAK--LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWT-DWSTHSILAC 239 (619)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEETT--TCCEEEESSSCCEEC---------CCCEEESSS--EEEEE-CTTTCSEEEE
T ss_pred EEeCCCCCCcEEEEEccCCEEEEEeCC--CCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEe-cCCCCEEEEE
Confidence 222234567899999988888888765 789999998654433322211 33456777655 55553 5567889999
Q ss_pred eCCCccEEEE
Q psy8285 410 EYPRLHLIEE 419 (507)
Q Consensus 410 d~~~~~~~~~ 419 (507)
|..+++....
T Consensus 240 d~~tg~~~~~ 249 (619)
T 3s94_A 240 NKYTGEGLRE 249 (619)
T ss_dssp ESSSCCCCEE
T ss_pred ECCCCcccEE
Confidence 9877654433
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=0.003 Score=62.71 Aligned_cols=118 Identities=5% Similarity=-0.077 Sum_probs=78.5
Q ss_pred CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeee-cC-CCeEEEEECCCCCeEEEEeccCCC-eEEEEeCCC
Q psy8285 337 SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TD-SQVTSILWSEQYRELVTSHGKQDC-SLKMWEYPR 413 (507)
Q Consensus 337 ~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~-~~i~~~~~s~~~~~l~~~~g~~d~-~i~v~d~~~ 413 (507)
..+..+++...++.|+.+..+ .+.|.+.++. |+....+. .. .....+++.|...+|+.+-..... .|...++..
T Consensus 389 ~~p~glAvD~~~~nLY~td~~--~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG 465 (628)
T 4a0p_A 389 IQPYDLSIDIYSRYIYWTCEA--TNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDG 465 (628)
T ss_dssp CCEEEEEEETTTTEEEEEETT--TTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTS
T ss_pred CCcceEEeeccCCeEEEEcCC--CCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCC
Confidence 357889999888888888765 8899999985 45444433 22 678999999966666553222222 677777754
Q ss_pred ccEEEEeeccccceeEEEECCCCCEEEEEeC-CCcEEEEecCCCC
Q psy8285 414 LHLIEELKIHQERILSAVLSPDQTCVAAASA-DETISIWNCFPRD 457 (507)
Q Consensus 414 ~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~ 457 (507)
..........-...+.+++++++..|+.+.. .+.|...++....
T Consensus 466 ~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~ 510 (628)
T 4a0p_A 466 TEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGAN 510 (628)
T ss_dssp CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc
Confidence 3332223323345688999998777776654 5788888885443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=0.0033 Score=62.31 Aligned_cols=278 Identities=12% Similarity=0.014 Sum_probs=159.6
Q ss_pred eeeeeCCC-C-EEEE-EcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 169 SGLDWGYH-D-TLAV-ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 169 ~~~~~s~~-~-~~~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
+.|+.+++ + ++.+ +..+.|...++.......+... .......+++..+ .|+.+....+.|...|..+++...
T Consensus 174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~---~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG---SLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLR 248 (619)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCE
T ss_pred cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeC---CCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccE
Confidence 45777764 3 3333 3567888888866544333321 1122346666544 666663567788888877664332
Q ss_pred EEee-----------cC---------------------------ccEEEEEe-------e-------CC-EEEEEecCCe
Q psy8285 246 KLRT-----------HM---------------------------HQVIAMCW-------N-------GN-LLSCGTIGGN 272 (507)
Q Consensus 246 ~~~~-----------~~---------------------------~~v~~~~~-------~-------~~-~l~~~~~dg~ 272 (507)
.+.. |. ....|.+. + .. +|+.+. .+.
T Consensus 249 ~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~~-~~~ 327 (619)
T 3s94_A 249 EIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLAR-RTD 327 (619)
T ss_dssp ECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEEE-SSC
T ss_pred EEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEEc-ccc
Confidence 2210 10 01122222 1 11 233333 456
Q ss_pred EEEEECCCCCcCceeee-cCCCceEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCC
Q psy8285 273 ILHYDVRTHSDYPTAIT-REGDVVCGLKWSPNGRYLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEP 349 (507)
Q Consensus 273 i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 349 (507)
|+..++.........+. ..-..+..++|.+.+..|+.+. . +.|+.+++... ...............+++.+.+.
T Consensus 328 i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~---~~~~v~~~~~~~p~GlAvD~~~~ 404 (619)
T 3s94_A 328 LRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS---GSQFVVTAQIAHPDGIAVDWVAR 404 (619)
T ss_dssp EEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSCCCEEEEETTTT
T ss_pred eEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCC---ccEEEEECCCCCcCceEEecccC
Confidence 77777765432222221 1224567899999766666665 3 88999988754 22222333335677899998777
Q ss_pred cEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecccccee
Q psy8285 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERIL 428 (507)
Q Consensus 350 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~ 428 (507)
+++.+..+ .+.|.+.++........+... .....+++.|...+|+.+--+....|...++............-...+
T Consensus 405 ~lY~tD~~--~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~ 482 (619)
T 3s94_A 405 NLYWTDTG--TDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPN 482 (619)
T ss_dssp EEEEEETT--TTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEE
T ss_pred cEEEEeCC--CCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCe
Confidence 88888765 889999998755433333222 678999999986666653222346787777754333222233344567
Q ss_pred EEEECCCCCEEEEEeC-CCcEEEEecCCCC
Q psy8285 429 SAVLSPDQTCVAAASA-DETISIWNCFPRD 457 (507)
Q Consensus 429 ~~~~s~~~~~l~s~~~-dg~i~iw~~~~~~ 457 (507)
.|++++++..|+.+.. .+.|...++....
T Consensus 483 GlalD~~~~~LY~aD~~~~~I~~~~~dG~~ 512 (619)
T 3s94_A 483 GLALDYDEGKIYWGDAKTDKIEVMNTDGTG 512 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEESSSCC
T ss_pred eeEEcccCCEEEEEECCCCEEEEEecCCCc
Confidence 8999987777766654 4678888876543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.30 E-value=0.0013 Score=56.59 Aligned_cols=200 Identities=10% Similarity=0.109 Sum_probs=125.7
Q ss_pred EEeecCccEEEEEee--C-CEEEEEecCCeEEEEECCCCCcCceeee-cCCCceEEEEEcCCCCEEEEEe-CCcEEEEEc
Q psy8285 246 KLRTHMHQVIAMCWN--G-NLLSCGTIGGNILHYDVRTHSDYPTAIT-REGDVVCGLKWSPNGRYLASGS-NNTVKIWDF 320 (507)
Q Consensus 246 ~~~~~~~~v~~~~~~--~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~ 320 (507)
.+.+-...+..++|+ + .++++...++.|...|.. ++ ....+. ........+++.+++.++++.- ++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~-v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD-LIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC-EEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC-EEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 344555678999994 3 456667788899999987 44 333332 2335678899999887666543 488999988
Q ss_pred CCCCCCCCeeee------cCCCCCeeEEEEccCCCcEEEEEccCCCC-eEEEEeC-CCCCeeeeeec--------CCCeE
Q psy8285 321 RQLDAKRPQVNN------QCHLSAVKAIAWCPWEPTLLATGGGICDQ-TVRLWNS-MNGKEKCHVKT--------DSQVT 384 (507)
Q Consensus 321 ~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~d~-~i~i~d~-~~~~~~~~~~~--------~~~i~ 384 (507)
........+... .........++|+|.+..++++... +. .|..|+- .....+..+.. -..+.
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~--~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK--NPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES--SSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc--CCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 765211111111 1234456899999998888887653 33 5555551 11112222211 13578
Q ss_pred EEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccc---------cceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 385 SILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQ---------ERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 385 ~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~---------~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
+++++|....+++. ..+...|.++|.. ++.+..+.-.. ..-..|+|.++|+. +..++...++.+.
T Consensus 177 ~l~~dp~tg~lliL-S~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f~ 250 (255)
T 3qqz_A 177 GAEFNQQKNTLLVL-SHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRFYRFT 250 (255)
T ss_dssp EEEEETTTTEEEEE-ETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEEEEEE
T ss_pred eEEEcCCCCeEEEE-ECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceEEEEE
Confidence 99999987777775 4677899999965 55555443211 24578999999984 4457766655554
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00096 Score=60.58 Aligned_cols=233 Identities=9% Similarity=0.056 Sum_probs=126.7
Q ss_pred cceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 166 FYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 166 ~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
..+..+.+.++.+++++..+.|+. ....++.-............+..+.+.+++..++++ .+|.|..- ...++.-.
T Consensus 80 ~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~g~v~~S-~DgG~tW~ 155 (327)
T 2xbg_A 80 YRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT--NVGAIYRT-KDSGKNWQ 155 (327)
T ss_dssp CEEEEEEEETTEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE--TTCCEEEE-SSTTSSEE
T ss_pred ccEEEEEecCCeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe--CCccEEEE-cCCCCCCE
Confidence 346678887766666777775554 333343322222110023457888887777666555 45654322 12233332
Q ss_pred EE-eecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCC
Q psy8285 246 KL-RTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQ 322 (507)
Q Consensus 246 ~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~ 322 (507)
.. ......+..+.+ ++.+++.+ .+|.+..-+-..+..-..........+..+.+.+++++++.+.+|.+++.+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~ 234 (327)
T 2xbg_A 156 ALVQEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN 234 (327)
T ss_dssp EEECSCCCCEEEEEECTTSCEEEEE-TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTE
T ss_pred EeecCCCcceEEEEEcCCCcEEEEE-CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCC
Confidence 22 234557888888 45565555 455554432111111111122345678889999999887776678887764222
Q ss_pred CCCCCCeeee-cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec----CCCeEEEEECCCCCeEEE
Q psy8285 323 LDAKRPQVNN-QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT----DSQVTSILWSEQYRELVT 397 (507)
Q Consensus 323 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~i~~~~~s~~~~~l~~ 397 (507)
+.....+... ......+..+.+.+++ .+++++. ++.+ ++....++.-..+.. ...+..+.|.+++..+++
T Consensus 235 G~tW~~~~~~~~~~~~~~~~v~~~~~~-~~~~~g~---~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~ 309 (327)
T 2xbg_A 235 SENWGELLSPLRRNSVGFLDLAYRTPN-EVWLAGG---AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFIL 309 (327)
T ss_dssp EEEECCCBCTTSSCCSCEEEEEESSSS-CEEEEES---TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEE
T ss_pred CCeeEeccCCcccCCcceEEEEecCCC-EEEEEeC---CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEE
Confidence 2111111111 0122358889998865 5777665 7766 455555554443331 346788888766665554
Q ss_pred EeccCCCeEEEEeC
Q psy8285 398 SHGKQDCSLKMWEY 411 (507)
Q Consensus 398 ~~g~~d~~i~v~d~ 411 (507)
+.+|.|.-++-
T Consensus 310 ---G~~G~i~~~~~ 320 (327)
T 2xbg_A 310 ---GQKGILLRYVT 320 (327)
T ss_dssp ---CSTTEEEEECC
T ss_pred ---cCCceEEEEcC
Confidence 46887776653
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0017 Score=58.22 Aligned_cols=193 Identities=13% Similarity=0.170 Sum_probs=122.1
Q ss_pred CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCC----CCE--EEEEe--C---CcEEEEEcCCCCCCCCe
Q psy8285 261 GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN----GRY--LASGS--N---NTVKIWDFRQLDAKRPQ 329 (507)
Q Consensus 261 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~--l~~~~--d---~~i~i~d~~~~~~~~~~ 329 (507)
..+++.....+-+.+||+. ++ ....+.. +.++.+..-|+ |+. ++.++ + ++|.+|++.... ..+
T Consensus 40 ~s~ii~t~k~~gL~Vydl~-G~-~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~--~~l 113 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSLD-GK-MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--GTL 113 (355)
T ss_dssp GCEEEEEETTTEEEEEETT-SC-EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT--CCE
T ss_pred ccEEEEEcCCCCEEEEcCC-Cc-EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC--Cce
Confidence 3456666677889999994 44 3444432 56677766652 222 44444 3 579999774221 234
Q ss_pred eeecC------CC-CCeeEEEE--ccCCC-cEEEEEccCCCCeEEEEeCC-------CCCeeeeeecCCCeEEEEECCCC
Q psy8285 330 VNNQC------HL-SAVKAIAW--CPWEP-TLLATGGGICDQTVRLWNSM-------NGKEKCHVKTDSQVTSILWSEQY 392 (507)
Q Consensus 330 ~~~~~------~~-~~v~~~~~--~~~~~-~~~~~~~~~~d~~i~i~d~~-------~~~~~~~~~~~~~i~~~~~s~~~ 392 (507)
..+.. .. ..++.+++ +|.+. ..+.+... ++.+..|++. +.+.++.+...+.+..|...+..
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k--~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~ 191 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK--EGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEY 191 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS--SSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTT
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC--CCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCC
Confidence 43311 11 56677777 77544 23333333 8999999883 33567788888899999999999
Q ss_pred CeEEEEeccCCCeEEEEeCC-----CccEEEEee-cc-ccceeEEEE--CCCCC-EEEEEe-CCCcEEEEecC-CCCccc
Q psy8285 393 RELVTSHGKQDCSLKMWEYP-----RLHLIEELK-IH-QERILSAVL--SPDQT-CVAAAS-ADETISIWNCF-PRDKKR 460 (507)
Q Consensus 393 ~~l~~~~g~~d~~i~v~d~~-----~~~~~~~~~-~~-~~~i~~~~~--s~~~~-~l~s~~-~dg~i~iw~~~-~~~~~~ 460 (507)
..|++ +.++..|..++.. +++.+..+. ++ ...+..|+. .++++ +|++++ .+.++.+|+.. +.+.+.
T Consensus 192 g~Lyv--~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg 269 (355)
T 3amr_A 192 GRLYI--AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA 269 (355)
T ss_dssp TEEEE--EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred CeEEE--ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence 99999 7788777777754 345555442 22 235777877 55666 666666 56799999997 445444
Q ss_pred cee
Q psy8285 461 KAR 463 (507)
Q Consensus 461 ~~~ 463 (507)
.+.
T Consensus 270 ~f~ 272 (355)
T 3amr_A 270 DFR 272 (355)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.17 E-value=0.001 Score=59.55 Aligned_cols=192 Identities=11% Similarity=0.188 Sum_probs=118.0
Q ss_pred CeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe------eCCE--E-EEEec---CCeEEEEECCCCCcCceee
Q psy8285 221 TDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW------NGNL--L-SCGTI---GGNILHYDVRTHSDYPTAI 288 (507)
Q Consensus 221 ~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~------~~~~--l-~~~~~---dg~i~i~d~~~~~~~~~~~ 288 (507)
..++.. ...+-+.+||+ +++.++.+.. +.+..+.. .++. + ++... +++|.+|++..........
T Consensus 41 s~ii~t-~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 41 SKLITT-NKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp CEEEEE-ETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred cEEEEE-cCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 455555 78889999999 7888888764 34444444 2332 3 33333 4789999774222122222
Q ss_pred ec------CC-CceEEEEE--cCC-CCE-EEEEe-CCcEEEEEcCCCC----CCCCeeeecCCCCCeeEEEEccCCCcEE
Q psy8285 289 TR------EG-DVVCGLKW--SPN-GRY-LASGS-NNTVKIWDFRQLD----AKRPQVNNQCHLSAVKAIAWCPWEPTLL 352 (507)
Q Consensus 289 ~~------~~-~~v~~~~~--~~~-~~~-l~~~~-d~~i~i~d~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 352 (507)
.. .. ..+..+++ +|. +++ +++.. ++.+..|++.... ..+.+.++. -.+.+..+...+....++
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCCCeEE
Confidence 11 11 55667777 674 553 44444 5999999884321 113445554 346788889988776777
Q ss_pred EEEccCCCCeEEEEeCC-----CCCeeeeeecC---CCeEEEEE--CCCCC-eEEEEeccCCCeEEEEeCC-CccEEEEe
Q psy8285 353 ATGGGICDQTVRLWNSM-----NGKEKCHVKTD---SQVTSILW--SEQYR-ELVTSHGKQDCSLKMWEYP-RLHLIEEL 420 (507)
Q Consensus 353 ~~~~~~~d~~i~i~d~~-----~~~~~~~~~~~---~~i~~~~~--s~~~~-~l~~~~g~~d~~i~v~d~~-~~~~~~~~ 420 (507)
+.-. +.-|..++.+ +++.+..+... ..+..+++ .++++ +|+++ .-.++...+||.. +.+.+..+
T Consensus 196 v~eE---d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS-sQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 196 IAEE---DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS-SQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEET---TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE-EGGGTEEEEEESSTTCCEEEEE
T ss_pred Eecc---cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEE-cCCCCEEEEEECCCCCcEEEEE
Confidence 6543 6667777755 23455444333 46788887 56666 67774 3457799999996 66777776
Q ss_pred e
Q psy8285 421 K 421 (507)
Q Consensus 421 ~ 421 (507)
.
T Consensus 272 ~ 272 (355)
T 3amr_A 272 R 272 (355)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0054 Score=58.25 Aligned_cols=242 Identities=11% Similarity=0.046 Sum_probs=137.3
Q ss_pred eeeeeCCC--C-EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEE-------ccCCCeEEEEeCCCC------
Q psy8285 169 SGLDWGYH--D-TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAW-------KPRTTDLAVTNTCTE------ 231 (507)
Q Consensus 169 ~~~~~s~~--~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~~~l~~~~~~dg------ 231 (507)
..|++.|. + ++++. ..+.|++.|++++....+.............++| +++++.|+++...++
T Consensus 142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~ 221 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP 221 (496)
T ss_dssp EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence 45888873 3 44444 3468999999888877665532112345899999 999997777723332
Q ss_pred cEEEEeCCC-ceeE-----EEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECC-------CCCc-----C-----c
Q psy8285 232 YIDLWHEQE-ERLI-----QKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVR-------THSD-----Y-----P 285 (507)
Q Consensus 232 ~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~-------~~~~-----~-----~ 285 (507)
.|.+++... +... ..+.... ....++. ++.++++-..++.|..+|+. ++.. + .
T Consensus 222 ~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~ 300 (496)
T 3kya_A 222 SVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTF 300 (496)
T ss_dssp EEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTE
T ss_pred eEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccccc
Confidence 266665433 1221 2222211 2234444 35566667778889999987 4432 0 0
Q ss_pred -eee-ecCCCceEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCC-CCCeeeecCC---------------CCCee-EEEE
Q psy8285 286 -TAI-TREGDVVCGLKWSPNGRYLASGS-N-NTVKIWDFRQLDA-KRPQVNNQCH---------------LSAVK-AIAW 344 (507)
Q Consensus 286 -~~~-~~~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~-~~~~~~~~~~---------------~~~v~-~~~~ 344 (507)
... .......+.++|+|+++.|+.+. . +.|+.++...... ......+-+. -.... .+..
T Consensus 301 ~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~v 380 (496)
T 3kya_A 301 KQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFV 380 (496)
T ss_dssp EEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEE
T ss_pred ceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEE
Confidence 111 12234467899999999766665 3 8888876643210 0000111111 11233 3444
Q ss_pred c-------cCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-------------------------CCeEEEEECCC-
Q psy8285 345 C-------PWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-------------------------SQVTSILWSEQ- 391 (507)
Q Consensus 345 ~-------~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-------------------------~~i~~~~~s~~- 391 (507)
. +++ .|+++-.+ ...|+.++ .++.. .++.+. .....++++++
T Consensus 381 d~~~~~~~~~g-~lyVaD~~--N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 381 KNPDYTGEEEY-DFYFVDRL--NFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp ECTTCCSSCCE-EEEEEEGG--GTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred ccccccccCCC-eEEEEECC--CCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence 3 334 66666654 88999999 45543 333211 23678888886
Q ss_pred CCeEEEEeccCCCeEEEEeCCCccEEE
Q psy8285 392 YRELVTSHGKQDCSLKMWEYPRLHLIE 418 (507)
Q Consensus 392 ~~~l~~~~g~~d~~i~v~d~~~~~~~~ 418 (507)
+..+++ -..+..|+.+++.......
T Consensus 456 g~lyVa--D~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 456 EMFYVH--DQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp TEEEEE--ETTTTEEEEEEECCCC---
T ss_pred CEEEEE--eCCCCEEEEEECCCCcccc
Confidence 555555 5667788888876554443
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00035 Score=70.35 Aligned_cols=258 Identities=12% Similarity=0.048 Sum_probs=138.4
Q ss_pred EEEEECCCCceeEEEecCCCCCCceEEEEEcc-CCCeEEEEeCCCC-----------cEEEEeCCCceeE--EEEee-cC
Q psy8285 187 VYTWNTKTNKTQLLVEYPTYDNAYISCVAWKP-RTTDLAVTNTCTE-----------YIDLWHEQEERLI--QKLRT-HM 251 (507)
Q Consensus 187 i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~dg-----------~i~iwd~~~~~~~--~~~~~-~~ 251 (507)
+..+|...++......++. . -.++++.+ +++.++.+| .+. .+.+||..+++.. ..+.. +.
T Consensus 168 ~~~~dp~~~~W~~~~~~P~---~-~~~~av~~~~g~l~v~GG-~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~ 242 (656)
T 1k3i_A 168 YTAPQPGLGRWGPTIDLPI---V-PAAAAIEPTSGRVLMWSS-YRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHD 242 (656)
T ss_dssp CCCCCTTSCEEEEEEECSS---C-CSEEEEETTTTEEEEEEE-CCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCC
T ss_pred cccCCCCCCeeeeeccCCC---C-ceeEEEEecCCEEEEEec-ccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCC
Confidence 4445566666666665542 2 23566777 777777773 322 5889999877532 22322 22
Q ss_pred ccEEEEEe--eCCEEEEEec-CCeEEEEECCCCCcCc-eeeecCCCceEEEEEcCCCCEEEEEe--C-----CcEEEEEc
Q psy8285 252 HQVIAMCW--NGNLLSCGTI-GGNILHYDVRTHSDYP-TAITREGDVVCGLKWSPNGRYLASGS--N-----NTVKIWDF 320 (507)
Q Consensus 252 ~~v~~~~~--~~~~l~~~~~-dg~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~--d-----~~i~i~d~ 320 (507)
....++++ ++++++.|+. +..+.+||..+.+-.. ..+.. ...-.+++..+++++++.|+ + ..+.+||.
T Consensus 243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence 22223333 7889999884 4579999988654111 11111 11223456667999988887 2 46899998
Q ss_pred CCCCCCCCeeeecC-----CCCCeeEEEEccCCCcEEEEEcc-------CCCCeEEEEeCCCCCeeeeeecC--------
Q psy8285 321 RQLDAKRPQVNNQC-----HLSAVKAIAWCPWEPTLLATGGG-------ICDQTVRLWNSMNGKEKCHVKTD-------- 380 (507)
Q Consensus 321 ~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~-------~~d~~i~i~d~~~~~~~~~~~~~-------- 380 (507)
.+.. ...+.. ....-....+..++ ++++.++. .....+..||..+..........
T Consensus 322 ~t~~----W~~~~~~~~~p~~~~~~~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~ 396 (656)
T 1k3i_A 322 SSKT----WTSLPNAKVNPMLTADKQGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 396 (656)
T ss_dssp TTTE----EEEETTSCSGGGCCCCTTGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred CCCc----ceeCCCccccccccccccceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCC
Confidence 7641 111100 00000000111222 33333321 01456788998877643322211
Q ss_pred --CCeEEEEECC-CCCeEEEEeccCCC-----------eEEEEeCCCccEEEEe--eccccce-eEEEECCCCCEEEEEe
Q psy8285 381 --SQVTSILWSE-QYRELVTSHGKQDC-----------SLKMWEYPRLHLIEEL--KIHQERI-LSAVLSPDQTCVAAAS 443 (507)
Q Consensus 381 --~~i~~~~~s~-~~~~l~~~~g~~d~-----------~i~v~d~~~~~~~~~~--~~~~~~i-~~~~~s~~~~~l~s~~ 443 (507)
..-.++.+.. +++.+++ |+.++ .|.+||..+.+-.... ..+..+. .+....|+++.++.|+
T Consensus 397 ~~~~~~av~~~~~~~~i~v~--GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG 474 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTF--GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGG 474 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEE--CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECC
T ss_pred CCCCCceEeccCCCCeEEEE--eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECC
Confidence 1234455544 5666666 55322 6788887765433322 1122222 3446678999999988
Q ss_pred CC-----------CcEEEEecCCCC
Q psy8285 444 AD-----------ETISIWNCFPRD 457 (507)
Q Consensus 444 ~d-----------g~i~iw~~~~~~ 457 (507)
.+ ..+.+||..+.+
T Consensus 475 ~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 475 QRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp BSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred cccCcCcCCCCcccceEEEcCCCCc
Confidence 54 468999987654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0018 Score=59.36 Aligned_cols=227 Identities=14% Similarity=0.105 Sum_probs=122.2
Q ss_pred CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee--EEEEe---ecCccEEEEEeeC-----CEEEEEecC------C
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL--IQKLR---THMHQVIAMCWNG-----NLLSCGTIG------G 271 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~--~~~~~---~~~~~v~~~~~~~-----~~l~~~~~d------g 271 (507)
-.....++|.|+|+.++ + ..+|.|++++ +++. +..+. ........++++. ..|..+... +
T Consensus 30 l~~P~~ia~~pdG~l~V-~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLI-A-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTSCEEE-E-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCCeEEE-E-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 34578999999998555 4 4679999998 4432 22111 1235678889843 455555432 5
Q ss_pred eEEEEECCCCCc-----Cceeee---cCCCceEEEEEcCCCCEEEEEeC--------------CcEEEEEcCCCC---C-
Q psy8285 272 NILHYDVRTHSD-----YPTAIT---REGDVVCGLKWSPNGRYLASGSN--------------NTVKIWDFRQLD---A- 325 (507)
Q Consensus 272 ~i~i~d~~~~~~-----~~~~~~---~~~~~v~~~~~~~~~~~l~~~~d--------------~~i~i~d~~~~~---~- 325 (507)
.|..++...... ....+. ........++|.|||.++++.++ +.|.-++....- .
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np 185 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP 185 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence 788888764310 111122 11112357999999987776543 345555543200 0
Q ss_pred ------CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC-------eEEEEeCCC----------------CCeeee
Q psy8285 326 ------KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ-------TVRLWNSMN----------------GKEKCH 376 (507)
Q Consensus 326 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~-------~i~i~d~~~----------------~~~~~~ 376 (507)
........++ .....++|+|+...++++..+ .+. .|.+..... ..+...
T Consensus 186 f~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 186 FLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEEC-C------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred ccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe
Confidence 0011111122 235689999954467666543 122 244432211 012223
Q ss_pred eecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE------EEEeeccccceeEEEECCCCCEEEEEe
Q psy8285 377 VKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL------IEELKIHQERILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 377 ~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~------~~~~~~~~~~i~~~~~s~~~~~l~s~~ 443 (507)
+..+.....++| .+|..+++ ....+.|...++..... ...+......+..+++.|||.++++..
T Consensus 264 ~~~~~ap~G~~~-~~G~l~v~--~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 264 WPQGFPPGNLAF-FRGDLYVA--GLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CTTCCCEEEEEE-ETTEEEEE--ETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCCCCcceEE-ECCEEEEE--ECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 323345667777 45665555 45567788877754321 122222245789999999998766654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.06 E-value=2.3e-05 Score=79.12 Aligned_cols=227 Identities=13% Similarity=-0.009 Sum_probs=131.9
Q ss_pred CCCcEEEEeCCCceeEEEEeecCccEEEEEee--CCEEEEE-ecCCeEEEEECCCC---CcCceeeecCCCceEEEEEcC
Q psy8285 229 CTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCG-TIGGNILHYDVRTH---SDYPTAITREGDVVCGLKWSP 302 (507)
Q Consensus 229 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~-~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~ 302 (507)
....|+..++.+.+....+.. ...+..++|+ +..|+.+ ...+.|+.+++... ......+.........+++.+
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 456788888877654433332 2345577774 4555554 45578999998751 111222222222345678886
Q ss_pred CCCEEEEEe--CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC
Q psy8285 303 NGRYLASGS--NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380 (507)
Q Consensus 303 ~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 380 (507)
.+..|+.+. .+.|.++++... .....+.........++++|.+.+|+++..+ ..+.|..+++........+...
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~---~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~~~l~~~~ 538 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGV---KRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTEN 538 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSC---CEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCCCEESCSS
T ss_pred eCCcEEEEeccCCeEEEEecCCC---ceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCeeEEEeCC
Confidence 555555544 489999998754 2222222223456789999987777776542 1267888877543322222222
Q ss_pred -CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec--cccceeEEEECCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 381 -SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI--HQERILSAVLSPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 381 -~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
.....|+|+|++..|+.+ -...+.|.++++........+.. .......|++..+ .++++....+.|..++..+++
T Consensus 539 l~~PnGlavd~~~~~LY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 539 IQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CSSCCCEEECTTTCCEEEE-ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred CCCccEEEEeccCCEEEEE-ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 457789999988777765 45677899999865333222221 1122345566443 445555667889999987766
Q ss_pred cccce
Q psy8285 458 KKRKA 462 (507)
Q Consensus 458 ~~~~~ 462 (507)
....+
T Consensus 617 ~~~~i 621 (699)
T 1n7d_A 617 DVNLL 621 (699)
T ss_dssp EEECC
T ss_pred ceEEe
Confidence 55444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.001 Score=70.05 Aligned_cols=275 Identities=8% Similarity=0.084 Sum_probs=173.4
Q ss_pred eeeeCCCCEEEEE----cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 170 GLDWGYHDTLAVA----LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 170 ~~~~s~~~~~~~~----~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
.+.+..|.++++- ...+|.|.|+.+++........ .-+.-.+|..+.+|.- ...++.|+|+.+...++
T Consensus 29 ~~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~rrpi~------AdsAIMnP~~~iiALr--ag~~lQiFnl~~k~klk 100 (1630)
T 1xi4_A 29 TLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS------ADSAIMNPASKVIALK--AGKTLQIFNIEMKSKMK 100 (1630)
T ss_pred ceeeecCceEEEEecCCCCceEEEEECCCCCCccccccc------chhhccCCCcceEEEe--cCCeEEEeehHHhhhhc
Confidence 3455556655542 3447888888876644322222 2344568888777766 47899999999887777
Q ss_pred EEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecC----CCceEEEEEcCCCCEEEEEe--------C
Q psy8285 246 KLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITRE----GDVVCGLKWSPNGRYLASGS--------N 312 (507)
Q Consensus 246 ~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~--------d 312 (507)
...- ..+|.--.| +.+.|+..+ +..|+-|++.....+.+.+..| ...|..-..+++.++++..+ .
T Consensus 101 s~~~-~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~ 178 (1630)
T 1xi4_A 101 AHTM-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVV 178 (1630)
T ss_pred cccc-CCCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCccc
Confidence 6653 345666677 778777776 5689999997655555555554 45677777888999876432 2
Q ss_pred CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEc--cCCCcEEEEEcc-CCCCeEEEEeCCCC---Ceee-----e--eec
Q psy8285 313 NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWC--PWEPTLLATGGG-ICDQTVRLWNSMNG---KEKC-----H--VKT 379 (507)
Q Consensus 313 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~-~~d~~i~i~d~~~~---~~~~-----~--~~~ 379 (507)
|.+.+|..+. +..+.+.+|.+....+... +....+++.+.. ...+.++|.++... .+.. . +..
T Consensus 179 G~mQLyS~er----~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~ 254 (1630)
T 1xi4_A 179 GAMQLYSVDR----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPP 254 (1630)
T ss_pred ceeeeeeccc----ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCc
Confidence 7889998886 3555667776665554443 222345554431 11368999988543 1111 0 111
Q ss_pred ---CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 380 ---DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 380 ---~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
..-..++..++....+.. -+.-|.|++||+.++.++..-+-...+|...+-+....=++.....|.|.--.+...
T Consensus 255 ~~~~Dfpv~~~vs~k~g~iy~--itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 255 EAQNDFPVAMQISEKHDVVFL--ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred ccccCcceEEEeccccCEEEE--EecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence 123567788888777777 568899999999999887765544455544444433333444556777766666655
Q ss_pred Cccc
Q psy8285 457 DKKR 460 (507)
Q Consensus 457 ~~~~ 460 (507)
..+.
T Consensus 333 ~iv~ 336 (1630)
T 1xi4_A 333 NIIP 336 (1630)
T ss_pred hhhh
Confidence 5443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.017 Score=52.87 Aligned_cols=221 Identities=13% Similarity=0.102 Sum_probs=120.9
Q ss_pred eeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecC---CCCCCceEEEEEccC---CCeEEEEeCCC-----CcEEEE
Q psy8285 169 SGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYP---TYDNAYISCVAWKPR---TTDLAVTNTCT-----EYIDLW 236 (507)
Q Consensus 169 ~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~~d-----g~i~iw 236 (507)
..++|.|++ ++++..++.|++++ +++.......+ . .......++|+|+ +..|.++.... +.|..+
T Consensus 34 ~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~-g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~ 110 (352)
T 2ism_A 34 WALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHR-GESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL 110 (352)
T ss_dssp EEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCS-TTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred eEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeec-CCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence 468999998 66667789999998 45543333221 1 3456899999998 66666652322 678888
Q ss_pred eCCCce-----e-EEEEe---ecCccEEEEEe--eCCEEEEEec-------------CCeEEEEECCCC-----------
Q psy8285 237 HEQEER-----L-IQKLR---THMHQVIAMCW--NGNLLSCGTI-------------GGNILHYDVRTH----------- 281 (507)
Q Consensus 237 d~~~~~-----~-~~~~~---~~~~~v~~~~~--~~~~l~~~~~-------------dg~i~i~d~~~~----------- 281 (507)
+...+. . +..+. ........+.| ++.+.++.+. .|.|..++....
T Consensus 111 ~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~ 190 (352)
T 2ism_A 111 RHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRR 190 (352)
T ss_dssp EECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCT
T ss_pred EeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCC
Confidence 876431 1 11122 11112246777 6765555432 256666666531
Q ss_pred -CcCceeeecCCCceEEEEEcC-CCCEEEEEeC-CcE------EEEEcCCCC---------------CCCCeeeecCCCC
Q psy8285 282 -SDYPTAITREGDVVCGLKWSP-NGRYLASGSN-NTV------KIWDFRQLD---------------AKRPQVNNQCHLS 337 (507)
Q Consensus 282 -~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~d-~~i------~i~d~~~~~---------------~~~~~~~~~~~~~ 337 (507)
........++ .....++|+| +++++++-.. ..+ .+.-+..+. ...+...+. +..
T Consensus 191 ~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ 268 (352)
T 2ism_A 191 GARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-QGF 268 (352)
T ss_dssp TSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCC
T ss_pred CCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-CCC
Confidence 0111222233 2356789999 6666555442 321 233333321 012333332 233
Q ss_pred CeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe-------eeeeecCCCeEEEEECCCCCeEEEE
Q psy8285 338 AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE-------KCHVKTDSQVTSILWSEQYRELVTS 398 (507)
Q Consensus 338 ~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~i~~~~~s~~~~~l~~~ 398 (507)
....++| .++ .++++... .+.|...++..... ...+.....+..+++.|||..+++.
T Consensus 269 ap~G~~~-~~G-~l~v~~~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 269 PPGNLAF-FRG-DLYVAGLR--GQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp CEEEEEE-ETT-EEEEEETT--TTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred CCcceEE-ECC-EEEEEECC--CCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 4567777 345 55555443 67888877754431 1122233678999999999777664
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.017 Score=52.83 Aligned_cols=228 Identities=11% Similarity=0.061 Sum_probs=125.2
Q ss_pred CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce-eEEEEe---ecCccEEEEEee-----CCEEEEEec----C----
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER-LIQKLR---THMHQVIAMCWN-----GNLLSCGTI----G---- 270 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~-~~~~~~---~~~~~v~~~~~~-----~~~l~~~~~----d---- 270 (507)
-.....|+|.|+|+.++ + ..+|.|++++ .+++ .+..+. ........++++ +..|.++.. +
T Consensus 28 l~~P~~ia~~pdG~l~V-~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLV-T-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEEETTEEEE-E-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEcCCCeEEE-E-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 34578999999997544 4 4679999997 4454 222211 123567888984 345555443 2
Q ss_pred CeEEEEECCCCC------c-Cceeeec-CCCceEEEEEcCCCCEEEEEeC--------------CcEEEEEcCCCCCC--
Q psy8285 271 GNILHYDVRTHS------D-YPTAITR-EGDVVCGLKWSPNGRYLASGSN--------------NTVKIWDFRQLDAK-- 326 (507)
Q Consensus 271 g~i~i~d~~~~~------~-~~~~~~~-~~~~v~~~~~~~~~~~l~~~~d--------------~~i~i~d~~~~~~~-- 326 (507)
..|..|+..... . ....+.. .......++|.|||.++++.++ +.|.-++.... ..
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~ 183 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPAD 183 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTT
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCC
Confidence 567778776531 0 0111111 1112356899999987777543 24444444321 00
Q ss_pred ----CCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC--CeEEEEeCCC--------C--------Ceeeee-ecCCCe
Q psy8285 327 ----RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD--QTVRLWNSMN--------G--------KEKCHV-KTDSQV 383 (507)
Q Consensus 327 ----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d--~~i~i~d~~~--------~--------~~~~~~-~~~~~i 383 (507)
.......++. ....++|+|+...++++-.+ .+ ..|.+..... + .++..+ ..+...
T Consensus 184 npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g-~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap 261 (354)
T 3a9g_A 184 NPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHG-PVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAP 261 (354)
T ss_dssp SSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECC-SSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCE
T ss_pred CCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecC-CCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCC
Confidence 0011112233 34689999954467776543 12 1344433111 0 122233 223467
Q ss_pred EEEEEC-------CCCCeEEEEeccCCCeEEEEeCCCc-cEE--EEe-eccccceeEEEECCCCCEEEEEe
Q psy8285 384 TSILWS-------EQYRELVTSHGKQDCSLKMWEYPRL-HLI--EEL-KIHQERILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 384 ~~~~~s-------~~~~~l~~~~g~~d~~i~v~d~~~~-~~~--~~~-~~~~~~i~~~~~s~~~~~l~s~~ 443 (507)
..+.|. .+|.++++ ....+.|...++... +.. ..+ .+....+..+++.|||.++++..
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~--~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIA--CLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEE--ETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cceEEECCCCCcccCCcEEEE--EcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 888884 46666666 556678888888753 222 222 22245788999999997666654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0025 Score=56.55 Aligned_cols=156 Identities=6% Similarity=-0.020 Sum_probs=105.1
Q ss_pred CceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCee-eecC----C--CCCeeEEEE---ccCCCcEEEEEcc---
Q psy8285 293 DVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQV-NNQC----H--LSAVKAIAW---CPWEPTLLATGGG--- 357 (507)
Q Consensus 293 ~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~-~~~~----~--~~~v~~~~~---~~~~~~~~~~~~~--- 357 (507)
..-.+++|.+....+..++ .++|..||...+ .... .+.. . ...+..+.| .|++ .|+++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~---~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~a 88 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQ---SHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKS 88 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTC---CEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCC---eEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEccccc
Confidence 3445788988777777777 599999998754 2221 2221 1 113579999 6885 55554220
Q ss_pred --------CCCCeEEEEeCC---CCCeeeeeec-------------C-CCeEEEEECCCCCeEEEEeccCC-CeEEEEeC
Q psy8285 358 --------ICDQTVRLWNSM---NGKEKCHVKT-------------D-SQVTSILWSEQYRELVTSHGKQD-CSLKMWEY 411 (507)
Q Consensus 358 --------~~d~~i~i~d~~---~~~~~~~~~~-------------~-~~i~~~~~s~~~~~l~~~~g~~d-~~i~v~d~ 411 (507)
+.+..+..||+. +++.+..... . .....++..++|+..++ ++.. +.|..++.
T Consensus 89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt--~s~~~~~I~rV~p 166 (334)
T 2p9w_A 89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVA--FALGMPAIARVSA 166 (334)
T ss_dssp TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEE--EEESSCEEEEECT
T ss_pred ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEe--CCCCCCeEEEEeC
Confidence 016789999999 7877665542 1 24789999999998888 5666 77777775
Q ss_pred CCccEEEEee------ccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 412 PRLHLIEELK------IHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 412 ~~~~~~~~~~------~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
... .+..+. ......+.|+++|+|..|++....|.+..+|+..
T Consensus 167 dG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 167 DGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp TSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 433 333221 1122367999999999988887799999999884
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.79 E-value=0.027 Score=59.98 Aligned_cols=267 Identities=11% Similarity=0.115 Sum_probs=148.6
Q ss_pred CCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCC-------------------------
Q psy8285 175 YHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTC------------------------- 229 (507)
Q Consensus 175 ~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~------------------------- 229 (507)
|++++.+ .++.++|..+.+.+.....+++ -...+..++++|+.+.++++.+.
T Consensus 706 ~~g~v~~-~~~~LrI~~i~~~~~~~~~~ip--L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1158)
T 3ei3_A 706 PDSLALA-NNSTLTIGTIDEIQKLHIRTVP--LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSS 782 (1158)
T ss_dssp TTEEEEE-CSSCEEEEEECCSSSEEEEEEE--CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEE
T ss_pred CCcEEEE-cCCceEEEEecccCCeeEEEEe--CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhc
Confidence 4456644 4566999888654443444433 34678888898887766554111
Q ss_pred -----------------------CCcEEEEeCCCceeEEEEee-cCccEEEEEe----e--CCEEEEEe----------c
Q psy8285 230 -----------------------TEYIDLWHEQEERLIQKLRT-HMHQVIAMCW----N--GNLLSCGT----------I 269 (507)
Q Consensus 230 -----------------------dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~----~--~~~l~~~~----------~ 269 (507)
.+.|++.|..+.+.+..+.- ....+.+++. + ..+|++|+ .
T Consensus 783 ~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~ 862 (1158)
T 3ei3_A 783 VSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPK 862 (1158)
T ss_dssp ECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCC
T ss_pred ccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCC
Confidence 02366677666666555542 2333445443 2 46888886 3
Q ss_pred CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCC
Q psy8285 270 GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEP 349 (507)
Q Consensus 270 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 349 (507)
.|.|++|++...+.........++++++++-- +| +|++|-...|++|++... +.+..-..+-..+..+.....++
T Consensus 863 ~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~---~~L~~~~~~~~~i~~~~l~~~~~ 937 (1158)
T 3ei3_A 863 QGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NG-KLLASINSTVRLYEWTTE---KELRTECNHYNNIMALYLKTKGD 937 (1158)
T ss_dssp CEEEEEEEEETTEEEEEEEEEESSCEEEEEEE-TT-EEEEEETTEEEEEEECTT---SCEEEEEEECCCSCEEEEEEETT
T ss_pred ceEEEEEEEECCEEEEEEEEEcCCcCEEEeee-CC-EEEEEcCCEEEEEECCCC---ceEEEEeeccccEEEEEEeccCC
Confidence 47899999874432222233456788887744 34 566666789999999865 33331111111233323323354
Q ss_pred cEEEEEccCCCCeEEE--EeCCCCCeeeeeec--CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCc-------cEEE
Q psy8285 350 TLLATGGGICDQTVRL--WNSMNGKEKCHVKT--DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL-------HLIE 418 (507)
Q Consensus 350 ~~~~~~~~~~d~~i~i--~d~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~-------~~~~ 418 (507)
.+++ +.- -..+.+ |+...++....-+. ...++++.+-.++ .++. +..+|.+.++..... +.+.
T Consensus 938 ~I~v-gD~--~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~--aD~~gNl~vl~~~~~~~~~~~~~~L~ 1011 (1158)
T 3ei3_A 938 FILV-GDL--MRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLG--AENAFNLFVCQKDSAATTDEERQHLQ 1011 (1158)
T ss_dssp EEEE-EES--SBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEE--EETTSEEEEEEECTTCCSTTGGGBEE
T ss_pred EEEE-EEh--hheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEE--EcCCCcEEEEecCCCCCCccccceee
Confidence 4554 432 344444 55544433322222 2468888887554 5555 578899999876431 2221
Q ss_pred Ee-ecc-ccceeEEE---ECCC---------CCEEEEEeCCCcEEEEecCC
Q psy8285 419 EL-KIH-QERILSAV---LSPD---------QTCVAAASADETISIWNCFP 455 (507)
Q Consensus 419 ~~-~~~-~~~i~~~~---~s~~---------~~~l~s~~~dg~i~iw~~~~ 455 (507)
.. .-| ...|+++. +.+. ...++.++.+|.|.+.-.-+
T Consensus 1012 ~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~pl~ 1062 (1158)
T 3ei3_A 1012 EVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLS 1062 (1158)
T ss_dssp EEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEEEC
T ss_pred eEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEEcC
Confidence 11 112 33466654 2332 23577888999988876554
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.042 Score=50.22 Aligned_cols=235 Identities=11% Similarity=0.094 Sum_probs=124.9
Q ss_pred ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE-------eecCccEEEEEee-----CCEEEEEe-c-------
Q psy8285 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL-------RTHMHQVIAMCWN-----GNLLSCGT-I------- 269 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~v~~~~~~-----~~~l~~~~-~------- 269 (507)
....|+|.|+|+.|+++ ...|.|++++.. ++....+ .........++++ +..|..+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 46899999999844455 578999999853 3321111 1123456788884 34444443 2
Q ss_pred CCeEEEEECCCCCc----Cceeeec------CCCceEEEEEcCCCCEEEEEeC--------------CcEEEEEcCCCCC
Q psy8285 270 GGNILHYDVRTHSD----YPTAITR------EGDVVCGLKWSPNGRYLASGSN--------------NTVKIWDFRQLDA 325 (507)
Q Consensus 270 dg~i~i~d~~~~~~----~~~~~~~------~~~~v~~~~~~~~~~~l~~~~d--------------~~i~i~d~~~~~~ 325 (507)
...|..+++..... ....+.. ....-..++|.|||.++++.++ +.|.-++....-.
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 23566676653310 1111111 0112356999999977666544 3466666543100
Q ss_pred -----------CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC----------------------
Q psy8285 326 -----------KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK---------------------- 372 (507)
Q Consensus 326 -----------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---------------------- 372 (507)
...+. ..++ .....++|+|....++++-.+ .++.=.|.-+..+.
T Consensus 177 ~~npf~~~~~~~~~i~-a~G~-rnp~gl~~d~~~g~l~~~d~g-~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~ 253 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIW-SYGI-RNPQGMAMNPWSNALWLNEHG-PRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK 253 (353)
T ss_dssp TTCTTTTSTTSCTTEE-EECC-SEEEEEEEETTTTEEEEEEEC-SBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred CCCCCcCCCCCCccEE-EEcC-cCccceEEECCCCCEEEEecC-CCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence 01111 1223 346789999944467765542 12111222221111
Q ss_pred ---------eeeeeecCCCeEEEEECC-------CCCeEEEEeccCCCeEEEEeCCCccEEEE--e-eccccceeEEEEC
Q psy8285 373 ---------EKCHVKTDSQVTSILWSE-------QYRELVTSHGKQDCSLKMWEYPRLHLIEE--L-KIHQERILSAVLS 433 (507)
Q Consensus 373 ---------~~~~~~~~~~i~~~~~s~-------~~~~l~~~~g~~d~~i~v~d~~~~~~~~~--~-~~~~~~i~~~~~s 433 (507)
++..+..+..+..+.|.. +|.++++ ....+.|...++..++.... + ......+..+++.
T Consensus 254 ~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 254 GEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIG--ALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp BSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEE--ETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEE--EccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 112222334567777764 4666666 45677888888776544322 2 2223578999999
Q ss_pred CCCCEEEEEe-CCCcEEEEec
Q psy8285 434 PDQTCVAAAS-ADETISIWNC 453 (507)
Q Consensus 434 ~~~~~l~s~~-~dg~i~iw~~ 453 (507)
|||.++++.. .+| +||.+
T Consensus 332 pdG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 332 PDGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp TTSCEEEEECSTTE--EEEEE
T ss_pred CCCcEEEEEeCCCC--EEEEE
Confidence 9998665433 334 45554
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.015 Score=52.86 Aligned_cols=159 Identities=13% Similarity=0.066 Sum_probs=96.3
Q ss_pred ceEEEEEcCCCCEEEEE-------------eCCcEEEEEcCCCCCCCCeeeecC-----CCCCeeEEEEcc--CCC-cEE
Q psy8285 294 VVCGLKWSPNGRYLASG-------------SNNTVKIWDFRQLDAKRPQVNNQC-----HLSAVKAIAWCP--WEP-TLL 352 (507)
Q Consensus 294 ~v~~~~~~~~~~~l~~~-------------~d~~i~i~d~~~~~~~~~~~~~~~-----~~~~v~~~~~~~--~~~-~~~ 352 (507)
....+...|+|..++++ .+|.|.++|+.+.........+.+ .......+.+.+ ++. +++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34567778887766665 258999999874311111112222 223567788766 343 466
Q ss_pred EEEccCCCCeEEEEeCCCCC-e---eeeeecC--CCeEEEEECCCCCeEEEEec---------------cCCCeEEEEeC
Q psy8285 353 ATGGGICDQTVRLWNSMNGK-E---KCHVKTD--SQVTSILWSEQYRELVTSHG---------------KQDCSLKMWEY 411 (507)
Q Consensus 353 ~~~~~~~d~~i~i~d~~~~~-~---~~~~~~~--~~i~~~~~s~~~~~l~~~~g---------------~~d~~i~v~d~ 411 (507)
++.....+.+|.+|++.... . +..+.+. ...+.+.+.++|.+.++... ...|.|.-+|.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 66543336788888775532 2 2233333 46899999999997776310 01355666665
Q ss_pred CCccEEEEeeccccceeEEEECCCCCEEEEEe-CCCcEEEEecCC
Q psy8285 412 PRLHLIEELKIHQERILSAVLSPDQTCVAAAS-ADETISIWNCFP 455 (507)
Q Consensus 412 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~dg~i~iw~~~~ 455 (507)
. + +..+...-..-+.++|+||+++|+.+. ..+.|..|++..
T Consensus 211 ~--~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 211 N--D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp T--C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred C--e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 3 2 222322334568999999998877654 568899999874
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.42 E-value=0.19 Score=53.56 Aligned_cols=266 Identities=11% Similarity=0.087 Sum_probs=144.3
Q ss_pred EEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccC------CCeEEEEeCC-CCcEEEEeCCCceeEEEEee-c
Q psy8285 179 LAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPR------TTDLAVTNTC-TEYIDLWHEQEERLIQKLRT-H 250 (507)
Q Consensus 179 ~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~~-dg~i~iwd~~~~~~~~~~~~-~ 250 (507)
++.+.++.+..+.+..++........ -...|.|+++.|. +++++++ .. |++++|+++.+.+.+....- .
T Consensus 526 vvva~g~~l~~fel~~~~L~~~~~~~--l~~evscl~i~~~~~~~~~s~~~aVg-~~~d~tv~I~sL~~l~~~~~~~L~~ 602 (1158)
T 3ei3_A 526 VVVAVGRALYYLQIHPQELRQISHTE--MEHEVACLDITPLGDSNGLSPLCAIG-LWTDISARILKLPSFELLHKEMLGG 602 (1158)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEEE--CSSCEEEEECCCCSSSTTCCSEEEEE-ETTTTEEEEEETTTCCEEEEEECCS
T ss_pred EEEEECCEEEEEEeeCCceeeecccC--CCCceEEEEeecCCCCcccccEEEEE-ECCCCEEEEEECCCCCeEEEEECCC
Confidence 33334678888877766544333322 3567999999864 3678888 64 99999999987666543321 1
Q ss_pred CccEEEEEe---e-CCEEEEEecCCeEEEEECCC--CCcCc-eeeecCCCceEEEEEcCCCC-EEEEEeCCcEEEEEcCC
Q psy8285 251 MHQVIAMCW---N-GNLLSCGTIGGNILHYDVRT--HSDYP-TAITREGDVVCGLKWSPNGR-YLASGSNNTVKIWDFRQ 322 (507)
Q Consensus 251 ~~~v~~~~~---~-~~~l~~~~~dg~i~i~d~~~--~~~~~-~~~~~~~~~v~~~~~~~~~~-~l~~~~d~~i~i~d~~~ 322 (507)
.....++.. . ..+|..|-.||.+..+.++. +.... +...-...++.-..+...+. .+.+.++....+|.-+.
T Consensus 603 ~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~ 682 (1158)
T 3ei3_A 603 EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH 682 (1158)
T ss_dssp SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSS
T ss_pred CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCC
Confidence 223344444 2 45788999999987666543 22111 11111233444344444333 34444455555554332
Q ss_pred CCCCCCeeeecCCCCCee-EEEEccCC--CcEEEEEccCCCCeEEEEeCCCCC--eeeeeecCCCeEEEEECCCCCeEEE
Q psy8285 323 LDAKRPQVNNQCHLSAVK-AIAWCPWE--PTLLATGGGICDQTVRLWNSMNGK--EKCHVKTDSQVTSILWSEQYRELVT 397 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~-~~~~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (507)
+...... ....+. ...|+... .-+++ .. ++.++|..+.+.+ .++.+.-...+..++++|+.+.+++
T Consensus 683 ----~l~~s~l-~~~~v~~~~~F~se~~~~g~v~-~~---~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v 753 (1158)
T 3ei3_A 683 ----KLVFSNV-NLKEVNYMCPLNSDGYPDSLAL-AN---NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGV 753 (1158)
T ss_dssp ----SEEEEEB-SSSCCCEEEEECCSSSTTEEEE-EC---SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEE
T ss_pred ----ceEEecc-ChHHhceEeccCcccCCCcEEE-Ec---CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEE
Confidence 1111111 112232 33343221 12333 33 5568888775433 3344555567888888888776655
Q ss_pred Eecc-----------------------------------------------CCCeEEEEeCCCccEEEEeecc-ccceeE
Q psy8285 398 SHGK-----------------------------------------------QDCSLKMWEYPRLHLIEELKIH-QERILS 429 (507)
Q Consensus 398 ~~g~-----------------------------------------------~d~~i~v~d~~~~~~~~~~~~~-~~~i~~ 429 (507)
.+.. .-+.|++.|-.+.+.+..+.-. ...+.+
T Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~s 833 (1158)
T 3ei3_A 754 LSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALS 833 (1158)
T ss_dssp EEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEE
T ss_pred EEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEE
Confidence 3211 0134777777777766554321 223444
Q ss_pred E---EECCC-CCEEEEEe----------CCCcEEEEecCCC
Q psy8285 430 A---VLSPD-QTCVAAAS----------ADETISIWNCFPR 456 (507)
Q Consensus 430 ~---~~s~~-~~~l~s~~----------~dg~i~iw~~~~~ 456 (507)
+ .|..+ ..+|+.|+ ..|.|++|++...
T Consensus 834 v~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~ 874 (1158)
T 3ei3_A 834 LVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG 874 (1158)
T ss_dssp EEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT
T ss_pred EEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC
Confidence 3 34333 46888776 3488999999743
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.024 Score=51.93 Aligned_cols=143 Identities=15% Similarity=0.113 Sum_probs=96.5
Q ss_pred EEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCC----CCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe-
Q psy8285 299 KWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCH----LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE- 373 (507)
Q Consensus 299 ~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~- 373 (507)
....+|..++.+.++.||.-++... ...+.+... -..+..+..+|+|. +++..+ +..|.|..+..+..
T Consensus 27 ~~~~n~t~i~~a~~n~iR~~~i~~~---~~Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~g---~~~V~Vv~LP~~~~~ 99 (452)
T 3pbp_A 27 FSSQNGTRIVFIQDNIIRWYNVLTD---SLYHSLNFSRHLVLDDTFHVISSTSGD-LLCLFN---DNEIFVMEVPWGYSN 99 (452)
T ss_dssp EEETTTTEEEEEETTEEEEEETTTC---SSCEEEECTTTCCCCTTCEEEECTTSS-EEEEEC---SSEEEEEECCTTCSC
T ss_pred EEEcCCCEEEEEECCEEEEEECCCC---CcceEEecCcccccCceeEEEECCCCC-EEEEec---CCeEEEEEecCcccc
Confidence 3456788888888899999888854 333333322 23678899999995 555554 78999999874321
Q ss_pred -----------eeeeec-------CCCeEEEEECCCC---CeEEEEeccCCCeEEEEeCCCc--cEEEEee---------
Q psy8285 374 -----------KCHVKT-------DSQVTSILWSEQY---RELVTSHGKQDCSLKMWEYPRL--HLIEELK--------- 421 (507)
Q Consensus 374 -----------~~~~~~-------~~~i~~~~~s~~~---~~l~~~~g~~d~~i~v~d~~~~--~~~~~~~--------- 421 (507)
.+.+.. ..+|..+.|+|-+ ..|++ -..|+.|++||+... ++. .+.
T Consensus 100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV--LtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d 176 (452)
T 3pbp_A 100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV--LKEDDTITMFDILNSQEKPI-VLNKPNNSFGLD 176 (452)
T ss_dssp CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE--EETTSCEEEEETTCTTSCCE-EESCCCSEEESC
T ss_pred CcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE--EecCCEEEEEEcccCCCCCc-chhccccccCCC
Confidence 112221 3579999999964 56777 457999999999752 222 222
Q ss_pred ccccceeEEEECCCCCEEEEEe--CCCcEEEE
Q psy8285 422 IHQERILSAVLSPDQTCVAAAS--ADETISIW 451 (507)
Q Consensus 422 ~~~~~i~~~~~s~~~~~l~s~~--~dg~i~iw 451 (507)
.....|.+++|.+++-.|...+ ..|.|+-.
T Consensus 177 ~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 177 ARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp SSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 1225688999999888777755 67776543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.085 Score=47.83 Aligned_cols=179 Identities=14% Similarity=0.124 Sum_probs=104.2
Q ss_pred cCCeEEEEECCCCCcCcee--eec-----CCCceEEEEEcC--CCC-EEEEEe----CCcEEEEEcCCCCC-CCCeeeec
Q psy8285 269 IGGNILHYDVRTHSDYPTA--ITR-----EGDVVCGLKWSP--NGR-YLASGS----NNTVKIWDFRQLDA-KRPQVNNQ 333 (507)
Q Consensus 269 ~dg~i~i~d~~~~~~~~~~--~~~-----~~~~v~~~~~~~--~~~-~l~~~~----d~~i~i~d~~~~~~-~~~~~~~~ 333 (507)
.+|.|.++|.++....... +.+ ..-....+.+.+ +++ +|+++. +..|.+|++..... ...+..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999998743211112 222 123567777765 454 455543 26788888775421 11222333
Q ss_pred CC-CCCeeEEEEccCCCcEEEEEcc---------------CCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEE
Q psy8285 334 CH-LSAVKAIAWCPWEPTLLATGGG---------------ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVT 397 (507)
Q Consensus 334 ~~-~~~v~~~~~~~~~~~~~~~~~~---------------~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 397 (507)
+. -...+.+.+.++|. ++++... ...+.|..+|. ++.......-...+.++|+||++.|++
T Consensus 161 g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEE
Confidence 22 24578999999984 4444320 01245666664 333333333367899999999999888
Q ss_pred EeccCCCeEEEEeCCC-ccE--EEEeeccccceeEEEECC-CCCEEEEEeCC-CcEEEEe
Q psy8285 398 SHGKQDCSLKMWEYPR-LHL--IEELKIHQERILSAVLSP-DQTCVAAASAD-ETISIWN 452 (507)
Q Consensus 398 ~~g~~d~~i~v~d~~~-~~~--~~~~~~~~~~i~~~~~s~-~~~~l~s~~~d-g~i~iw~ 452 (507)
+ -+..+.|..|++.. ++. ...+ ...+..-.+++.+ +|++.+++..+ +.|..|+
T Consensus 238 a-dt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 238 A-ELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp E-EGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred E-eCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 6 45678999999863 322 2233 2245567789999 59888766644 3344443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.068 Score=49.04 Aligned_cols=144 Identities=16% Similarity=0.160 Sum_probs=95.4
Q ss_pred eCCEEEEEecCCeEEEEECCCCCcCceeeecC----CCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCC-CC-------
Q psy8285 260 NGNLLSCGTIGGNILHYDVRTHSDYPTAITRE----GDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDA-KR------- 327 (507)
Q Consensus 260 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~-~~------- 327 (507)
++..++.+- ++.||.-++.... ..+.+... -..+..+..+|+|++||..++..|.|..+..+.. ..
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~-~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDS-LYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCS-SCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCC-cceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence 566665555 4677877777443 33333332 2357889999999999999999999999874311 11
Q ss_pred -CeeeecC------CCCCeeEEEEccCCC---cEEEEEccCCCCeEEEEeCCCC--Ceeeeee-------cC---CCeEE
Q psy8285 328 -PQVNNQC------HLSAVKAIAWCPWEP---TLLATGGGICDQTVRLWNSMNG--KEKCHVK-------TD---SQVTS 385 (507)
Q Consensus 328 -~~~~~~~------~~~~v~~~~~~~~~~---~~~~~~~~~~d~~i~i~d~~~~--~~~~~~~-------~~---~~i~~ 385 (507)
....+.- ...+|..+.|+|-+. .+++..+ |+.|++||+... ++. .+. .. ..+.+
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLts---D~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S 184 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKE---DDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD 184 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEET---TSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEec---CCEEEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence 0111111 256799999999653 5666665 999999999763 222 221 11 46899
Q ss_pred EEECCCCCeEEEEeccCCCeEEEE
Q psy8285 386 ILWSEQYRELVTSHGKQDCSLKMW 409 (507)
Q Consensus 386 ~~~s~~~~~l~~~~g~~d~~i~v~ 409 (507)
++|.+++-.|.+.+.++.|.|+-.
T Consensus 185 ~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 185 LEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEcCCCcEEEEEecCCCCCEEEE
Confidence 999998887777434577888765
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.09 Score=46.67 Aligned_cols=212 Identities=8% Similarity=-0.011 Sum_probs=117.3
Q ss_pred cCCCeEEEEeC-CCCcEEEEeCCCceeEEEEeecCccEEEEEeeCCEEEEEecC--------------CeEEEEECCCCC
Q psy8285 218 PRTTDLAVTNT-CTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIG--------------GNILHYDVRTHS 282 (507)
Q Consensus 218 ~~~~~l~~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d--------------g~i~i~d~~~~~ 282 (507)
.++..++.... .++.|...+..... ...+... .+..+..+++.|+.+... ..|+..++...+
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~ 99 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG 99 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCC
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc
Confidence 45556665522 24455555543322 2333221 234444567777666543 357777777654
Q ss_pred cCceeeecCCCceEEEEEcCCCCEEEEEe---C--CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEcc
Q psy8285 283 DYPTAITREGDVVCGLKWSPNGRYLASGS---N--NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGG 357 (507)
Q Consensus 283 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---d--~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 357 (507)
...+.... +..|+++++.|+... + ..|+..++... ....+..+.. ..++|+++.++.+..+
T Consensus 100 --~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs----~~~~lt~~~~----~~~~~~g~~iy~t~~g 165 (302)
T 3s25_A 100 --STVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE----EKKKIKNHYL----FTCNTSDRYFYYNNPK 165 (302)
T ss_dssp --CEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSC----CCEEEESSCC----CCSEEETTEEEEECTT
T ss_pred --ceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCC----CeEEEeCCCc----eEeeEECCEEEEEeCC
Confidence 33333222 236778888888765 3 45555555532 2333333322 4567888888887654
Q ss_pred CCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCC
Q psy8285 358 ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQT 437 (507)
Q Consensus 358 ~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~ 437 (507)
...|...++..+.....+.. ... ..+.|++.+|+.+.......|..-++..... ..+.. ..+ ..|+|++.
T Consensus 166 --~~~Iy~~~l~g~~~~~l~~~--~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~~~~g~ 235 (302)
T 3s25_A 166 --NGQLYRYDTASQSEALFYDC--NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE--ANI--EHYNVYGS 235 (302)
T ss_dssp --TCCEEEEETTTTEEEEEECS--CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECSC--SCE--EEEEEETT
T ss_pred --CceEEEEECCCCCEEEEeCC--Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC--CCc--ceEEECCC
Confidence 78899999877655444332 222 2356999999885322234677777765543 33332 223 34788888
Q ss_pred EEEEEeC--CCcEEEEecCCC
Q psy8285 438 CVAAASA--DETISIWNCFPR 456 (507)
Q Consensus 438 ~l~s~~~--dg~i~iw~~~~~ 456 (507)
+|+-++. .+.|..-++...
T Consensus 236 ~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 236 LIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp EEEEEECSSSCEEEEEETTSC
T ss_pred EEEEEECCCCcEEEEEECCCC
Confidence 8876543 344555555443
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.062 Score=47.92 Aligned_cols=217 Identities=14% Similarity=0.062 Sum_probs=111.7
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC----CcEEEEeCCCceeEEEE--eecCccEEEE
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT----EYIDLWHEQEERLIQKL--RTHMHQVIAM 257 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d----g~i~iwd~~~~~~~~~~--~~~~~~v~~~ 257 (507)
...+.+||..+.+...+..++. .......+.+ ++..++.+ +.+ ..+.+||..+.+-...- .........+
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~lyv~G-G~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 98 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFE-KRRDAACVFW--DNVVYILG-GSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAAC 98 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSC-CCBSCEEEEE--TTEEEEEC-CBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEE
T ss_pred CceEEEecCCCCCEecCCCCCc-ccceeEEEEE--CCEEEEEe-CCCCCCcceEEEEeCCCCeEEECCCCCccccceeEE
Confidence 4689999999988776655543 2233333333 45555555 443 57889999887543322 2122223334
Q ss_pred EeeCCEEEEEecC------CeEEEEECCCCCcCce-eeecCCCceEEEEEcCCCCEEEEEe-C---------CcEEEEEc
Q psy8285 258 CWNGNLLSCGTIG------GNILHYDVRTHSDYPT-AITREGDVVCGLKWSPNGRYLASGS-N---------NTVKIWDF 320 (507)
Q Consensus 258 ~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-d---------~~i~i~d~ 320 (507)
..++++++.|+.+ ..+.+||..+..-... .+.........+. -++++++.|+ + ..+.+||+
T Consensus 99 ~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~ 176 (306)
T 3ii7_A 99 AAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDP 176 (306)
T ss_dssp EETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEET
T ss_pred EECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCC
Confidence 4578888888765 4588999887541110 1111111112222 2667777665 2 34888998
Q ss_pred CCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC---CCeEEEEeCCCCCeee--eeecC-CCeEEEEECCCCCe
Q psy8285 321 RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC---DQTVRLWNSMNGKEKC--HVKTD-SQVTSILWSEQYRE 394 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~--~~~~~-~~i~~~~~s~~~~~ 394 (507)
.+..- ..+..+.........+.+ ++ .+++.++... -..+.+||+.+.+-.. .+... .....+.+ +++.
T Consensus 177 ~~~~W-~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 250 (306)
T 3ii7_A 177 ATETW-TELCPMIEARKNHGLVFV--KD-KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIV 250 (306)
T ss_dssp TTTEE-EEECCCSSCCBSCEEEEE--TT-EEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEE
T ss_pred CCCeE-EECCCccchhhcceEEEE--CC-EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEE
Confidence 76511 111111111111122222 33 6777665211 1468899988764222 12211 12233333 5555
Q ss_pred EEEEeccCC-----CeEEEEeCCCc
Q psy8285 395 LVTSHGKQD-----CSLKMWEYPRL 414 (507)
Q Consensus 395 l~~~~g~~d-----~~i~v~d~~~~ 414 (507)
++. |+.+ ..+.+||..+.
T Consensus 251 ~v~--GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 251 YVL--AGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEE--ECBCSSSBCCEEEEEETTTT
T ss_pred EEE--eCcCCCeeeeeEEEEcCCCC
Confidence 555 4432 46888888764
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.097 Score=46.48 Aligned_cols=199 Identities=9% Similarity=0.070 Sum_probs=119.1
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeec-------CccEEEEEe---e--CCEEEEEec-----
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTH-------MHQVIAMCW---N--GNLLSCGTI----- 269 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~v~~~~~---~--~~~l~~~~~----- 269 (507)
..-...++.|.+....+.++.-..++|..||...+......... ...+..+.| | ++++++...
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 44455688998877777777458999999998755433332111 113578888 4 445554432
Q ss_pred --------CCeEEEEECC---CCCcCcee-eec-----------CCCceEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCC
Q psy8285 270 --------GGNILHYDVR---THSDYPTA-ITR-----------EGDVVCGLKWSPNGRYLASGS-N-NTVKIWDFRQLD 324 (507)
Q Consensus 270 --------dg~i~i~d~~---~~~~~~~~-~~~-----------~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~ 324 (507)
+..|..||+. +++..... +.. .......++..++|+..++++ . +.|...+....
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~- 169 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK- 169 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-
Confidence 5779999998 55522111 111 113478999999999998887 5 66666665432
Q ss_pred CCCCeeee------cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCee-eeee--c---C-CCeEEE-EECC
Q psy8285 325 AKRPQVNN------QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK-CHVK--T---D-SQVTSI-LWSE 390 (507)
Q Consensus 325 ~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~-~~~~--~---~-~~i~~~-~~s~ 390 (507)
.+..+ .......+.|+++|++..|++..+ .+.+.-+|+.+.... .... + . .....+ ..-.
T Consensus 170 ---~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~---~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~ 243 (334)
T 2p9w_A 170 ---TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG---PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPV 243 (334)
T ss_dssp ---CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS---SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEE
T ss_pred ---EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC---CCeEEEEcCCCCcceeecccccCCcccccCccccccccc
Confidence 22211 112234679999999976666654 899999998843220 1111 1 1 223443 3345
Q ss_pred CCCeEEEEeccCCCeEEEEeCCC
Q psy8285 391 QYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 391 ~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
+|+.++++ ....+.+.+.+...
T Consensus 244 ~G~vllV~-~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 244 GNESVLVG-ARAPYAISFRSWDN 265 (334)
T ss_dssp TTEEEEEE-EETTEEEEEECSST
T ss_pred CCEEEEEE-cCCCCEEEEECCCC
Confidence 77776664 33456666666544
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.021 Score=50.88 Aligned_cols=216 Identities=12% Similarity=0.055 Sum_probs=109.4
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC-----CcEEEEeCCCce---eEEE--EeecCccE
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT-----EYIDLWHEQEER---LIQK--LRTHMHQV 254 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~i~iwd~~~~~---~~~~--~~~~~~~v 254 (507)
..+.+||+.+.+...+..++. .......+. .++..++.+ +.+ ..+.+||..+.+ -... +.......
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~--~~~~l~v~G-G~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~ 106 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITR-KRRYVASVS--LHDRIYVIG-GYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA 106 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSS-CCBSCEEEE--ETTEEEEEC-CBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC
T ss_pred eEEEEEcCCCCeEEeCCCCCh-hhccccEEE--ECCEEEEEc-CCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce
Confidence 478999998887766554433 222222332 245556666 433 468999988765 2222 22222223
Q ss_pred EEEEeeCCEEEEEecC-----CeEEEEECCCCCcCc-eeeecCCCceEEEEEcCCCCEEEEEe-C-----CcEEEEEcCC
Q psy8285 255 IAMCWNGNLLSCGTIG-----GNILHYDVRTHSDYP-TAITREGDVVCGLKWSPNGRYLASGS-N-----NTVKIWDFRQ 322 (507)
Q Consensus 255 ~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~~~ 322 (507)
..+..++++++.|+.+ ..+.+||+.+.+-.. ..+.........+.+ ++++++.|+ + ..+.+||+.+
T Consensus 107 ~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~ 184 (301)
T 2vpj_A 107 GATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHT 184 (301)
T ss_dssp EEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred eEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCC
Confidence 3344477777777754 358889987754111 111111111122222 667777765 2 4688999876
Q ss_pred CCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC---CCeEEEEeCCCCCeeee--eecC-CCeEEEEECCCCCeEE
Q psy8285 323 LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC---DQTVRLWNSMNGKEKCH--VKTD-SQVTSILWSEQYRELV 396 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~--~~~~-~~i~~~~~s~~~~~l~ 396 (507)
..- ..+..+.........+.+ + ..+++.++... ...+.+||+.+.+-... +... .....+.+ +++.++
T Consensus 185 ~~W-~~~~~~p~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v 258 (301)
T 2vpj_A 185 GHW-TNVTPMATKRSGAGVALL--N-DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYA 258 (301)
T ss_dssp TEE-EEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEE
T ss_pred CcE-EeCCCCCcccccceEEEE--C-CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEE
Confidence 411 111111111111122222 3 36777765311 24689999987653322 1111 11222322 555555
Q ss_pred EEeccCC-----CeEEEEeCCCc
Q psy8285 397 TSHGKQD-----CSLKMWEYPRL 414 (507)
Q Consensus 397 ~~~g~~d-----~~i~v~d~~~~ 414 (507)
. |+.+ ..+.+||..+.
T Consensus 259 ~--GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 259 I--AGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp E--CCBCSSSBEEEEEEEETTTT
T ss_pred E--cCcCCCcccccEEEEcCCCC
Confidence 5 4443 46788887654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.065 Score=44.28 Aligned_cols=176 Identities=9% Similarity=-0.001 Sum_probs=98.9
Q ss_pred CEEEEEecCCeEEEEECCCCCc--C--ceeeecC--CCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCC
Q psy8285 262 NLLSCGTIGGNILHYDVRTHSD--Y--PTAITRE--GDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCH 335 (507)
Q Consensus 262 ~~l~~~~~dg~i~i~d~~~~~~--~--~~~~~~~--~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 335 (507)
.+|+....| +++.=....... - .....+. =..+..++|+|+|.+.++ .++.++-.+..+. ... .+.+.
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~---~~~-~W~~s 78 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTH---DND-NWMGR 78 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCS---TTC-CHHHH
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCC---Ccc-ccccc
Confidence 345566666 555544443321 0 1111122 236779999999998777 7687666665432 111 11111
Q ss_pred CCC--------eeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee------eeec-C-CCeEEEEECCCCCeEEEEe
Q psy8285 336 LSA--------VKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC------HVKT-D-SQVTSILWSEQYRELVTSH 399 (507)
Q Consensus 336 ~~~--------v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~------~~~~-~-~~i~~~~~s~~~~~l~~~~ 399 (507)
... ..++.|.|+| .|.++ + |+.|+-++-.+...-. .+.. . ..+..+.+.|+|...++
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G-~LYav-~---dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav-- 151 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNG-YLYAV-S---KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAV-- 151 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTS-CEEEE-E---TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEE--
T ss_pred ccEecccccccceEEEECCCC-CEEEe-C---CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEE--
Confidence 122 3789999998 56555 4 8999888764322111 1111 1 46899999999998887
Q ss_pred ccCCCeEEEEeCCCcc------EEEEee-ccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 400 GKQDCSLKMWEYPRLH------LIEELK-IHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 400 g~~d~~i~v~d~~~~~------~~~~~~-~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
. |+.++-....+.. ....+- ..-...+.+.|.+++...+.. +| ++|...+.
T Consensus 152 ~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~~~p 209 (236)
T 1tl2_A 152 H--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GG--KFYEDYPP 209 (236)
T ss_dssp E--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TT--EEEEESCC
T ss_pred e--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CC--eEEecCCc
Confidence 4 7776544333221 111111 222344557799998877655 66 56665443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.031 Score=49.79 Aligned_cols=215 Identities=11% Similarity=0.075 Sum_probs=105.6
Q ss_pred CcEEEEeCCCceeEEE--EeecCccEEEEEeeCCEEEEEecC-----CeEEEEECCCCCcC-ceee---ecCCCceEEEE
Q psy8285 231 EYIDLWHEQEERLIQK--LRTHMHQVIAMCWNGNLLSCGTIG-----GNILHYDVRTHSDY-PTAI---TREGDVVCGLK 299 (507)
Q Consensus 231 g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~-~~~~---~~~~~~v~~~~ 299 (507)
..+.+||..+.+-... +.........+..++.+++.|+.+ ..+.+||+.+.... ...+ .........+.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 3688899887653322 111122233344577788888765 46889998875410 1111 11111122222
Q ss_pred EcCCCCEEEEEe-C-----CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC---CCeEEEEeCCC
Q psy8285 300 WSPNGRYLASGS-N-----NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC---DQTVRLWNSMN 370 (507)
Q Consensus 300 ~~~~~~~l~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~ 370 (507)
+ ++++++.|+ + ..+.+||+.+..- ..+..+.........+.+ ++ .+++.++... -..+.+||+.+
T Consensus 111 ~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~ 184 (301)
T 2vpj_A 111 L--GDMIYVSGGFDGSRRHTSMERYDPNIDQW-SMLGDMQTAREGAGLVVA--SG-VIYCLGGYDGLNILNSVEKYDPHT 184 (301)
T ss_dssp E--TTEEEEECCBCSSCBCCEEEEEETTTTEE-EEEEECSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTT
T ss_pred E--CCEEEEEcccCCCcccceEEEEcCCCCeE-EECCCCCCCcccceEEEE--CC-EEEEECCCCCCcccceEEEEeCCC
Confidence 2 567777765 2 3688999876411 111111111111122222 34 6777665311 24688999887
Q ss_pred CCeeee--eecCC-CeEEEEECCCCCeEEEEeccCC-----CeEEEEeCCCccE--EEEeeccccceeEEEECCCCCEEE
Q psy8285 371 GKEKCH--VKTDS-QVTSILWSEQYRELVTSHGKQD-----CSLKMWEYPRLHL--IEELKIHQERILSAVLSPDQTCVA 440 (507)
Q Consensus 371 ~~~~~~--~~~~~-~i~~~~~s~~~~~l~~~~g~~d-----~~i~v~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~ 440 (507)
.+-... +.... ....+.+ +++.++. |+.+ ..+.+||..+.+- +..+.........+. .+++.++
T Consensus 185 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~--GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v 258 (301)
T 2vpj_A 185 GHWTNVTPMATKRSGAGVALL--NDHIYVV--GGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYA 258 (301)
T ss_dssp TEEEEECCCSSCCBSCEEEEE--TTEEEEE--CCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEE
T ss_pred CcEEeCCCCCcccccceEEEE--CCEEEEE--eCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEE
Confidence 653322 11111 1222222 4555555 5443 4689999887542 222221111112222 2666777
Q ss_pred EEeCC-----CcEEEEecCCCC
Q psy8285 441 AASAD-----ETISIWNCFPRD 457 (507)
Q Consensus 441 s~~~d-----g~i~iw~~~~~~ 457 (507)
.|+.+ ..+.+||+.+.+
T Consensus 259 ~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 259 IAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp ECCBCSSSBEEEEEEEETTTTE
T ss_pred EcCcCCCcccccEEEEcCCCCe
Confidence 77655 346777776543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.066 Score=47.63 Aligned_cols=216 Identities=15% Similarity=0.159 Sum_probs=107.5
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC-----CcEEEEeCCCceeEEEE--eecCccEEEE
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT-----EYIDLWHEQEERLIQKL--RTHMHQVIAM 257 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~i~iwd~~~~~~~~~~--~~~~~~v~~~ 257 (507)
..+..||+.+.+...+..++. ....-..+.+ ++..++.+ +.+ ..+.+||..+.+-...- .........+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~lyv~G-G~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 105 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPS-RRCRAGMVYM--AGLVFAVG-GFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAA 105 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEES-CBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred CcEEEEcCcCCcEeEcccCCc-ccccceEEEE--CCEEEEEe-CcCCCccccceEEECCCCCceeeCCCCCccccceEEE
Confidence 468899998887766655443 2222222222 45555555 433 36889998876533321 1122223344
Q ss_pred EeeCCEEEEEecCC-----eEEEEECCCCCcCce-eeecCCCceEEEEEcCCCCEEEEEe-C-------CcEEEEEcCCC
Q psy8285 258 CWNGNLLSCGTIGG-----NILHYDVRTHSDYPT-AITREGDVVCGLKWSPNGRYLASGS-N-------NTVKIWDFRQL 323 (507)
Q Consensus 258 ~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~-d-------~~i~i~d~~~~ 323 (507)
.+++.+++.|+.++ .+.+||+.+.+-... .+........ ++. -++++++.|+ + ..+.+||+.+.
T Consensus 106 ~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~ 183 (302)
T 2xn4_A 106 VLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVG-VGV-VGGLLYAVGGYDVASRQCLSTVECYNATTN 183 (302)
T ss_dssp EETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCE-EEE-ETTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred EECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCce-EEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence 45788888887664 577888876541110 1111111112 222 2566777665 2 34888998764
Q ss_pred CCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC---CCeEEEEeCCCCCeeee--eecC-CCeEEEEECCCCCeEEE
Q psy8285 324 DAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC---DQTVRLWNSMNGKEKCH--VKTD-SQVTSILWSEQYRELVT 397 (507)
Q Consensus 324 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~--~~~~-~~i~~~~~s~~~~~l~~ 397 (507)
.- ..+..+.........+.+ + ..+++.++... ...+.+||+.+.+-... +... .....+.+ +++.++.
T Consensus 184 ~W-~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~ 257 (302)
T 2xn4_A 184 EW-TYIAEMSTRRSGAGVGVL--N-NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVV 257 (302)
T ss_dssp EE-EEECCCSSCCBSCEEEEE--T-TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE
T ss_pred cE-EECCCCccccccccEEEE--C-CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEE
Confidence 11 111111111111122222 3 36777765311 24689999887653222 1111 11122222 4555555
Q ss_pred EeccCC-----CeEEEEeCCCc
Q psy8285 398 SHGKQD-----CSLKMWEYPRL 414 (507)
Q Consensus 398 ~~g~~d-----~~i~v~d~~~~ 414 (507)
|+.+ ..+.+||..+.
T Consensus 258 --GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 258 --GGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp --CCBCSSSBCCCEEEEETTTT
T ss_pred --CCcCCCcccccEEEEcCCCC
Confidence 4443 34788887654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.19 Score=45.86 Aligned_cols=221 Identities=12% Similarity=0.082 Sum_probs=121.0
Q ss_pred eeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecC--CCCCCceEEEEEccC---CCeEEEEeCC---C----CcEEE
Q psy8285 169 SGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYP--TYDNAYISCVAWKPR---TTDLAVTNTC---T----EYIDL 235 (507)
Q Consensus 169 ~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~---~~~l~~~~~~---d----g~i~i 235 (507)
..|+|.|++ ++++..++.|++++. +++ ..+..++ .........|+++|+ +..|.++.+. + ..|..
T Consensus 32 ~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r 109 (354)
T 3a9g_A 32 WSIAPLGGGRYLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIR 109 (354)
T ss_dssp EEEEEEETTEEEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEE
T ss_pred eEEEEcCCCeEEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEE
Confidence 468999988 666677899999974 555 3333221 103456899999998 5666665121 2 56777
Q ss_pred EeCCCc-------eeE-EEEee-cCccEEEEEe--eCCEEEEEec-------------CCeEEEEECCCCC-------cC
Q psy8285 236 WHEQEE-------RLI-QKLRT-HMHQVIAMCW--NGNLLSCGTI-------------GGNILHYDVRTHS-------DY 284 (507)
Q Consensus 236 wd~~~~-------~~~-~~~~~-~~~~v~~~~~--~~~~l~~~~~-------------dg~i~i~d~~~~~-------~~ 284 (507)
|+.... +.+ ..+.. .......+.| ++.+.++.+. .|.|..++....- ..
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~ 189 (354)
T 3a9g_A 110 GRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNS 189 (354)
T ss_dssp EEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTC
T ss_pred EEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCC
Confidence 876643 111 11221 1112345677 6766665432 2456666654320 01
Q ss_pred ceeeecCCCceEEEEEcC-CCCEEEEEeC----CcEEEEEcCCCC---------------CCCCeeeecCCCCCeeEEEE
Q psy8285 285 PTAITREGDVVCGLKWSP-NGRYLASGSN----NTVKIWDFRQLD---------------AKRPQVNNQCHLSAVKAIAW 344 (507)
Q Consensus 285 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~d----~~i~i~d~~~~~---------------~~~~~~~~~~~~~~v~~~~~ 344 (507)
.....++. ....++|+| +++++++-.. ..|.+.. .+. ...++..+.........++|
T Consensus 190 ~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~ 266 (354)
T 3a9g_A 190 PIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASF 266 (354)
T ss_dssp CEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEE
T ss_pred cEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEE
Confidence 12223333 345799999 6666555432 2244332 221 01233333112345778888
Q ss_pred c-------cCCCcEEEEEccCCCCeEEEEeCCCC-Cee--eeee-c-CCCeEEEEECCCCCeEEE
Q psy8285 345 C-------PWEPTLLATGGGICDQTVRLWNSMNG-KEK--CHVK-T-DSQVTSILWSEQYRELVT 397 (507)
Q Consensus 345 ~-------~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~--~~~~-~-~~~i~~~~~s~~~~~l~~ 397 (507)
. .++ .++++.-. .+.|...++... +.. ..+. . ...+..+++.|||...++
T Consensus 267 y~g~~fp~~~G-~l~v~~~~--~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~ 328 (354)
T 3a9g_A 267 VHGDMFPGLRG-WLLIACLR--GSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIS 328 (354)
T ss_dssp CCSSSCGGGTT-EEEEEETT--TTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEE
T ss_pred ECCCCCcccCC-cEEEEEcC--CCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEE
Confidence 3 345 56655443 678888888753 322 2222 2 257899999999976665
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.091 Score=46.82 Aligned_cols=216 Identities=9% Similarity=0.106 Sum_probs=107.7
Q ss_pred CCcEEEEeCCCceeEEE--EeecCccEEEEEeeCCEEEEEecC----CeEEEEECCCCCcCce-eeecCCCceEEEEEcC
Q psy8285 230 TEYIDLWHEQEERLIQK--LRTHMHQVIAMCWNGNLLSCGTIG----GNILHYDVRTHSDYPT-AITREGDVVCGLKWSP 302 (507)
Q Consensus 230 dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~ 302 (507)
...+.+||..+.+-... +.........+..++.+++.|+.+ ..+.+||+.+.+-... .+.........+.+
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-- 100 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA-- 100 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--
T ss_pred CceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--
Confidence 45789999888654322 112222233444577888888765 5688999887641111 11111111122222
Q ss_pred CCCEEEEEe-C------CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC-------CCeEEEEeC
Q psy8285 303 NGRYLASGS-N------NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC-------DQTVRLWNS 368 (507)
Q Consensus 303 ~~~~l~~~~-d------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------d~~i~i~d~ 368 (507)
++++++.|+ + ..+.+||+.+..- ..+..+.........+.+ ++ .+++.++... -..+.+||+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~~~yd~ 176 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESW-HTKPSMLTQRCSHGMVEA--NG-LIYVCGGSLGNNVSGRVLNSCEVYDP 176 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TT-EEEEECCEESCTTTCEECCCEEEEET
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCce-EeCCCCcCCcceeEEEEE--CC-EEEEECCCCCCCCcccccceEEEeCC
Confidence 567777765 3 4688999876511 011111111111112222 34 6666664211 245889998
Q ss_pred CCCCeeee--eecC-CCeEEEEECCCCCeEEEEeccCC-----CeEEEEeCCCcc--EEEEeeccccceeEEEECCCCCE
Q psy8285 369 MNGKEKCH--VKTD-SQVTSILWSEQYRELVTSHGKQD-----CSLKMWEYPRLH--LIEELKIHQERILSAVLSPDQTC 438 (507)
Q Consensus 369 ~~~~~~~~--~~~~-~~i~~~~~s~~~~~l~~~~g~~d-----~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~ 438 (507)
.+.+-... +... .....+.+ +++.++. |+.+ ..+.+||..+.+ .+..+.........+.+ +++.
T Consensus 177 ~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~--GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 250 (306)
T 3ii7_A 177 ATETWTELCPMIEARKNHGLVFV--KDKIFAV--GGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIV 250 (306)
T ss_dssp TTTEEEEECCCSSCCBSCEEEEE--TTEEEEE--CCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEE
T ss_pred CCCeEEECCCccchhhcceEEEE--CCEEEEE--eCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEE
Confidence 87643222 1111 11222222 4555555 4433 468999987653 22222221222222333 6677
Q ss_pred EEEEeCC-----CcEEEEecCCCC
Q psy8285 439 VAAASAD-----ETISIWNCFPRD 457 (507)
Q Consensus 439 l~s~~~d-----g~i~iw~~~~~~ 457 (507)
++.|+.+ ..+.+||+.+.+
T Consensus 251 ~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 251 YVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEEeCcCCCeeeeeEEEEcCCCCe
Confidence 7777744 457788877654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.12 Score=46.36 Aligned_cols=180 Identities=8% Similarity=0.014 Sum_probs=90.7
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeC-----C-C----CcEEEEeCCCceeEEE--EeecCc
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNT-----C-T----EYIDLWHEQEERLIQK--LRTHMH 252 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----~-d----g~i~iwd~~~~~~~~~--~~~~~~ 252 (507)
..+..||+.+++... ..++. ............++..++.+|. . . ..+.+||..+.+-... +.....
T Consensus 13 ~~~~~yd~~~~~W~~-~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 90 (315)
T 4asc_A 13 EGAVAYDPAANECYC-ASLSS-QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC 90 (315)
T ss_dssp TEEEEEETTTTEEEE-EECCC-CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred CceEEECCCCCeEec-CCCCC-CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence 689999999988754 44432 2223333333456777777741 1 1 1277889887654221 111111
Q ss_pred cEEEEEeeCCEEEEEecC--------CeEEEEECCCCCcC-ceeeecCCCceEEEEEcCCCCEEEEEeC-------CcEE
Q psy8285 253 QVIAMCWNGNLLSCGTIG--------GNILHYDVRTHSDY-PTAITREGDVVCGLKWSPNGRYLASGSN-------NTVK 316 (507)
Q Consensus 253 ~v~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~d-------~~i~ 316 (507)
....+..++.+++.|+.+ ..+.+||..+.+-. ...+........ ++. .++++++.|+. ..+.
T Consensus 91 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~-~~~~iyv~GG~~~~~~~~~~~~ 168 (315)
T 4asc_A 91 LFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHT-VLS-HMDLVYVIGGKGSDRKCLNKMC 168 (315)
T ss_dssp SCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCE-EEE-ETTEEEEECCBCTTSCBCCCEE
T ss_pred ceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCccccee-EEE-ECCEEEEEeCCCCCCcccceEE
Confidence 122333477777777743 35889998875311 111111111112 222 35667676652 4689
Q ss_pred EEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC---CeEEEEeCCCCC
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD---QTVRLWNSMNGK 372 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d---~~i~i~d~~~~~ 372 (507)
+||+.+..- ..+..+.........+.+ ++ .+++.++...+ ..+.+||+.+.+
T Consensus 169 ~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 169 VYDPKKFEW-KELAPMQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp EEETTTTEE-EECCCCSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred EEeCCCCeE-EECCCCCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEECCCCe
Confidence 999876411 011111111111122222 33 67777653111 268889988764
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.13 Score=45.65 Aligned_cols=215 Identities=14% Similarity=0.128 Sum_probs=103.2
Q ss_pred CcEEEEeCCCceeEEE--EeecCccEEEEEeeCCEEEEEecC-----CeEEEEECCCCCcCce-eeecCCCceEEEEEcC
Q psy8285 231 EYIDLWHEQEERLIQK--LRTHMHQVIAMCWNGNLLSCGTIG-----GNILHYDVRTHSDYPT-AITREGDVVCGLKWSP 302 (507)
Q Consensus 231 g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~ 302 (507)
..+.+||+.+.+-... +......-..+..++.+++.|+.+ ..+.+||..+.+-... .+.........+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-- 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-- 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--
Confidence 3588888887653322 111111222334477788887755 3588899876541110 11111111122222
Q ss_pred CCCEEEEEe-C-----CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC-----CCeEEEEeCCCC
Q psy8285 303 NGRYLASGS-N-----NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC-----DQTVRLWNSMNG 371 (507)
Q Consensus 303 ~~~~l~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----d~~i~i~d~~~~ 371 (507)
++++++.|+ + ..+.+||+.+..- ..+..+.........+.+ ++ .+++.++... -..+.+||+.+.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~ 183 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEW-FHVAPMNTRRSSVGVGVV--GG-LLYAVGGYDVASRQCLSTVECYNATTN 183 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TT-EEEEECCEETTTTEECCCEEEEETTTT
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeE-eecCCCCCcccCceEEEE--CC-EEEEEeCCCCCCCccccEEEEEeCCCC
Confidence 567777766 3 3578888876411 111111111111112222 33 6776664211 245889998876
Q ss_pred Ceeee--eecC-CCeEEEEECCCCCeEEEEeccCC-----CeEEEEeCCCccE--EEEeeccccceeEEEECCCCCEEEE
Q psy8285 372 KEKCH--VKTD-SQVTSILWSEQYRELVTSHGKQD-----CSLKMWEYPRLHL--IEELKIHQERILSAVLSPDQTCVAA 441 (507)
Q Consensus 372 ~~~~~--~~~~-~~i~~~~~s~~~~~l~~~~g~~d-----~~i~v~d~~~~~~--~~~~~~~~~~i~~~~~s~~~~~l~s 441 (507)
+-... +... .....+.+ +++.++. |+.+ ..+.+||..+.+= +..+......-..+. .+++.++.
T Consensus 184 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~--GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~i~v~ 257 (302)
T 2xn4_A 184 EWTYIAEMSTRRSGAGVGVL--NNLLYAV--GGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCA--VNGLLYVV 257 (302)
T ss_dssp EEEEECCCSSCCBSCEEEEE--TTEEEEE--CCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEE
T ss_pred cEEECCCCccccccccEEEE--CCEEEEE--CCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEE--ECCEEEEE
Confidence 53222 2211 11222222 4555555 5443 4689999876532 222221111111222 26667777
Q ss_pred EeCCC-----cEEEEecCCCC
Q psy8285 442 ASADE-----TISIWNCFPRD 457 (507)
Q Consensus 442 ~~~dg-----~i~iw~~~~~~ 457 (507)
|+.++ .+.+||+.+.+
T Consensus 258 GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 258 GGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCBCSSSBCCCEEEEETTTTE
T ss_pred CCcCCCcccccEEEEcCCCCe
Confidence 76553 47888877653
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.084 Score=47.15 Aligned_cols=216 Identities=12% Similarity=0.044 Sum_probs=107.7
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCC----C-----CcEEEEeCCCceeEEE--EeecCcc
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTC----T-----EYIDLWHEQEERLIQK--LRTHMHQ 253 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----d-----g~i~iwd~~~~~~~~~--~~~~~~~ 253 (507)
..+.+||+.+.+...+..++. .......+.+ ++..++.+ +. + ..+.+||..+.+-... +......
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~lyv~G-G~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 114 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQV-PRSGLAGCVV--GGLLYAVG-GRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR 114 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEEC-CEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT
T ss_pred ceEEEEcCCCCeEeECCCCCc-ccccceEEEE--CCEEEEEC-CCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccc
Confidence 478999998888766654433 2222222222 45555555 43 2 4688999887653322 1112222
Q ss_pred EEEEEeeCCEEEEEecC-----CeEEEEECCCCCcC-ceeeecCCCceEEEEEcCCCCEEEEEe-C-----CcEEEEEcC
Q psy8285 254 VIAMCWNGNLLSCGTIG-----GNILHYDVRTHSDY-PTAITREGDVVCGLKWSPNGRYLASGS-N-----NTVKIWDFR 321 (507)
Q Consensus 254 v~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~~ 321 (507)
...+..++++++.|+.+ ..+.+||+.+.+-. ...+.........+.+ ++++++.|+ + ..+.+||+.
T Consensus 115 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 192 (308)
T 1zgk_A 115 IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPE 192 (308)
T ss_dssp CEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred cEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCC
Confidence 33344477777777644 35888998765411 1111111111222222 567777765 2 468899987
Q ss_pred CCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC---CCeEEEEeCCCCCeeee--eecCC-CeEEEEECCCCCeE
Q psy8285 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC---DQTVRLWNSMNGKEKCH--VKTDS-QVTSILWSEQYREL 395 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~--~~~~~-~i~~~~~s~~~~~l 395 (507)
+..-. .+..+.........+.+ + ..+++.++... -..+.+||+.+.+-... +.... ....+.+ +++.+
T Consensus 193 ~~~W~-~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~ 266 (308)
T 1zgk_A 193 RNEWR-MITAMNTIRSGAGVCVL--H-NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIY 266 (308)
T ss_dssp TTEEE-ECCCCSSCCBSCEEEEE--T-TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEE
T ss_pred CCeEe-eCCCCCCccccceEEEE--C-CEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEE
Confidence 64110 11111111111222222 3 36777765311 25689999887653221 11111 1222222 45555
Q ss_pred EEEeccCC-----CeEEEEeCCCc
Q psy8285 396 VTSHGKQD-----CSLKMWEYPRL 414 (507)
Q Consensus 396 ~~~~g~~d-----~~i~v~d~~~~ 414 (507)
+. |+.+ ..+.+||..+.
T Consensus 267 v~--GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 267 VL--GGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp EE--CCBCSSCBCCEEEEEETTTT
T ss_pred EE--cCcCCCcccceEEEEcCCCC
Confidence 55 4433 35777887654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.32 Score=43.12 Aligned_cols=235 Identities=8% Similarity=-0.006 Sum_probs=132.3
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC-------------CcEEEEeCCCceeEEEEeec
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT-------------EYIDLWHEQEERLIQKLRTH 250 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-------------g~i~iwd~~~~~~~~~~~~~ 250 (507)
++.|+..+.......++..- .+--+++++.+|+.+...+ ..|+..++...+... +..
T Consensus 36 ~~~ly~~~~dg~~~~~l~~~--------~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~- 105 (302)
T 3s25_A 36 NGRLYAMNIDGSNIHKLSND--------TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP- 105 (302)
T ss_dssp TTEEEEEETTSCSCEEEEEE--------EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC-
T ss_pred CceEEEEcCCCCCCEEccCC--------ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec-
Confidence 56777777655554444331 2345688999999883332 467777777654333 222
Q ss_pred CccEEEEEeeCCEEEEEe--c--CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC--CcEEEEEcCCCC
Q psy8285 251 MHQVIAMCWNGNLLSCGT--I--GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN--NTVKIWDFRQLD 324 (507)
Q Consensus 251 ~~~v~~~~~~~~~l~~~~--~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--~~i~i~d~~~~~ 324 (507)
.....++.+++.|+... . ...|+..++.... ...+..+.. ..++++++.|+-.++ ..|...++...
T Consensus 106 -~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~- 177 (302)
T 3s25_A 106 -DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ- 177 (302)
T ss_dssp -SCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTT-
T ss_pred -CCccEEEEeCCEEEEEeecCCCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCC-
Confidence 23345666888888776 2 3456666666433 444444432 456788888887774 77888887654
Q ss_pred CCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCC
Q psy8285 325 AKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDC 404 (507)
Q Consensus 325 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~ 404 (507)
. ...+.. +... ..+.|++..++.+... ....|..-++...... .+. ...+ ..|+|+++.|+.+.....+
T Consensus 178 --~-~~~l~~--~~~~-~~~~P~g~~iy~t~~~-~~~~I~~~~ldG~~~~-~Lt-~~~~--~~~~~~g~~Iy~~~~~~~~ 246 (302)
T 3s25_A 178 --S-EALFYD--CNCY-KPVVLDDTNVYYMDVN-RDNAIVHVNINNPNPV-VLT-EANI--EHYNVYGSLIFYQRGGDNP 246 (302)
T ss_dssp --E-EEEEEC--SCEE-EEEEEETTEEEEEEGG-GTTEEEEECSSSCCCE-ECS-CSCE--EEEEEETTEEEEEECSSSC
T ss_pred --C-EEEEeC--CCcc-ceeeecCCEEEEEEcC-CCcEEEEEECCCCCeE-EEe-CCCc--ceEEECCCEEEEEECCCCc
Confidence 2 222221 2222 3456999888887653 1246777777655533 332 2233 3488889999874223346
Q ss_pred eEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEe-CCCcEEEEe
Q psy8285 405 SLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAAS-ADETISIWN 452 (507)
Q Consensus 405 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~-~dg~i~iw~ 452 (507)
.|..-++..........+ .+. .+++.+.+|+-.. ..+.|..-+
T Consensus 247 ~i~~~~~DG~~r~~l~~~---~~~--~i~i~~d~Iy~td~~~~~i~~~~ 290 (302)
T 3s25_A 247 ALCVVKNDGTGFKELAKG---EFC--NINVTSQYVYFTDFVSNKEYCTS 290 (302)
T ss_dssp EEEEEETTSCCCEEEEES---CEE--EEEECSSEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCccEEeeCC---ccc--eEEEeCCEEEEEECCCCeEEEEE
Confidence 777777764333222222 233 3444556665444 234444333
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.38 Score=43.01 Aligned_cols=178 Identities=13% Similarity=0.073 Sum_probs=89.4
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCC----CC-------cEEEEeCCCceeEEE--EeecC
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTC----TE-------YIDLWHEQEERLIQK--LRTHM 251 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----dg-------~i~iwd~~~~~~~~~--~~~~~ 251 (507)
..+..||+.+.+... ...+. ............++..++.+ +. ++ .+.+||..+.+-... +....
T Consensus 24 ~~~~~yd~~~~~W~~-~~~~~-~~~r~~~~~~~~~~~lyv~G-G~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 24 TAAVAYDPMENECYL-TALAE-QIPRNHSSIVTQQNQVYVVG-GLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp SEEEEEETTTTEEEE-EEECT-TSCSSEEEEECSSSCEEEEE-SSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred cceEEECCCCCceec-ccCCc-cCCccceEEEEECCEEEEEC-CcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 458999999888765 33321 12222333334566677777 42 12 277889877654322 11111
Q ss_pred ccEEEEEeeCCEEEEEecC-------CeEEEEECCCCCcCceeeecCCCce--EEEEEcCCCCEEEEEe--C-----CcE
Q psy8285 252 HQVIAMCWNGNLLSCGTIG-------GNILHYDVRTHSDYPTAITREGDVV--CGLKWSPNGRYLASGS--N-----NTV 315 (507)
Q Consensus 252 ~~v~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~--d-----~~i 315 (507)
........++.+++.|+.+ ..+.+||..+.+ -........+. .+++. .++++++.|+ + ..+
T Consensus 101 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~ 177 (318)
T 2woz_A 101 CLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAK--WSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRV 177 (318)
T ss_dssp CSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTE--EEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCE
T ss_pred cccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCC--EeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceE
Confidence 2223344478888888764 247888887654 11111111110 11222 3667777665 1 358
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC---CeEEEEeCCCCC
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD---QTVRLWNSMNGK 372 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d---~~i~i~d~~~~~ 372 (507)
.+||+.+..- ..+..+.........+.+ ++ .+++.++...+ ..+.+||+.+.+
T Consensus 178 ~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 178 FIYNPKKGDW-KDLAPMKTPRSMFGVAIH--KG-KIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EEEETTTTEE-EEECCCSSCCBSCEEEEE--TT-EEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EEEcCCCCEE-EECCCCCCCcccceEEEE--CC-EEEEEcCcCCCCccceEEEEECCCCe
Confidence 9999886511 111111111111122222 33 67777653112 357889988765
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.24 Score=44.14 Aligned_cols=227 Identities=11% Similarity=0.061 Sum_probs=107.9
Q ss_pred CCCeEEEEeC---CCCcEEEEeCCCceeEEE--EeecCccEEEEEeeCCEEEEEec----C-----CeEEEEECCCCCcC
Q psy8285 219 RTTDLAVTNT---CTEYIDLWHEQEERLIQK--LRTHMHQVIAMCWNGNLLSCGTI----G-----GNILHYDVRTHSDY 284 (507)
Q Consensus 219 ~~~~l~~~~~---~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~----d-----g~i~i~d~~~~~~~ 284 (507)
++..++.+|. .-..+.+||..+.+-... +.........+..++.+++.|+. + ..+.+||+.+.+-.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 3445555521 123688888877653322 11111122233447777777775 2 45888998775411
Q ss_pred -ceeeecCCCceEEEEEcCCCCEEEEEe-C-----CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEcc
Q psy8285 285 -PTAITREGDVVCGLKWSPNGRYLASGS-N-----NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGG 357 (507)
Q Consensus 285 -~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 357 (507)
...+.........+.+ ++++++.|+ + ..+.+||+.+..- ..+..+.........+.+ + ..+++.++.
T Consensus 104 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~ 177 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW-HLVAPMLTRRIGVGVAVL--N-RLLYAVGGF 177 (308)
T ss_dssp ECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--T-TEEEEECCB
T ss_pred ECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE-eECCCCCccccceEEEEE--C-CEEEEEeCC
Confidence 1111111112222222 667777765 2 4688999876411 011111111111122222 3 367776653
Q ss_pred CC---CCeEEEEeCCCCCeeee--eecC-CCeEEEEECCCCCeEEEEeccCC-----CeEEEEeCCCccEE--EEeeccc
Q psy8285 358 IC---DQTVRLWNSMNGKEKCH--VKTD-SQVTSILWSEQYRELVTSHGKQD-----CSLKMWEYPRLHLI--EELKIHQ 424 (507)
Q Consensus 358 ~~---d~~i~i~d~~~~~~~~~--~~~~-~~i~~~~~s~~~~~l~~~~g~~d-----~~i~v~d~~~~~~~--~~~~~~~ 424 (507)
.. -..+.+||+.+.+-... +... .....+.+ +++.++. |+.+ ..+.+||+.+.+=. ..+....
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~--GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 253 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAA--GGYDGQDQLNSVERYDVETETWTFVAPMKHRR 253 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEE--CCBCSSSBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEE--eCCCCCCccceEEEEeCCCCcEEECCCCCCCc
Confidence 11 24688999877643221 1111 11222333 5555555 5443 56999998775322 2222111
Q ss_pred cceeEEEECCCCCEEEEEeCC-----CcEEEEecCCCC
Q psy8285 425 ERILSAVLSPDQTCVAAASAD-----ETISIWNCFPRD 457 (507)
Q Consensus 425 ~~i~~~~~s~~~~~l~s~~~d-----g~i~iw~~~~~~ 457 (507)
..-..+. -+++.++.|+.+ ..+.+||+.+.+
T Consensus 254 ~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 254 SALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp BSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred cceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 1112222 256667777644 346677776543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.42 Score=43.09 Aligned_cols=230 Identities=13% Similarity=0.030 Sum_probs=122.5
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE--EE----eecCccEEEEEee-----CCEEEEE-e--cCCe
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ--KL----RTHMHQVIAMCWN-----GNLLSCG-T--IGGN 272 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~--~~----~~~~~~v~~~~~~-----~~~l~~~-~--~dg~ 272 (507)
.-.....|+|.|+|+.+++- ...|.|++++..+++... .+ .........|+++ +..|... + .++.
T Consensus 30 gL~~P~~ia~~pdG~llVte-r~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSS-RDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEE-TTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEcCCCcEEEEE-ecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 45567899999999877766 448999999876554322 11 1235567889983 3444433 2 3456
Q ss_pred EEEEECCCCC-------cCceee---e-cCCCceEEEEEcCCCCEEEEEeC--------------CcEEEEEcCCCC---
Q psy8285 273 ILHYDVRTHS-------DYPTAI---T-REGDVVCGLKWSPNGRYLASGSN--------------NTVKIWDFRQLD--- 324 (507)
Q Consensus 273 i~i~d~~~~~-------~~~~~~---~-~~~~~v~~~~~~~~~~~l~~~~d--------------~~i~i~d~~~~~--- 324 (507)
|.-|.+.... .....+ . .....-..+.|.|||.+.++.+| +.|.-.+....-
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~ 188 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPG 188 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTT
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCC
Confidence 7667665421 011111 1 11112356899999988777542 344444443210
Q ss_pred -CC-CCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC------------------eeeeeecC-CCe
Q psy8285 325 -AK-RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK------------------EKCHVKTD-SQV 383 (507)
Q Consensus 325 -~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------------------~~~~~~~~-~~i 383 (507)
.. .......+|. ....++|+|++ .++++-.+ .++.=.|--+..+. ++..+..+ ...
T Consensus 189 nPf~~~~i~a~G~R-Np~Gla~dp~G-~L~~~d~g-~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap 265 (347)
T 3das_A 189 NPFPGSPVYSYGHR-NVQGLAWDDKQ-RLFASEFG-QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASP 265 (347)
T ss_dssp CSSTTCCEEEBCCS-BCCEEEECTTC-CEEEEECC-SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCE
T ss_pred CCCCCCeEEeeCCC-CcceEEECCCC-CEEEEecC-CCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCC
Confidence 00 0011112343 34689999976 56665432 13222222222221 12222222 245
Q ss_pred EEEEECCCCCeEEEEeccCCCeEEEEeCCCccE----EEEeeccccceeEEEECCCCCEEEEEe
Q psy8285 384 TSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL----IEELKIHQERILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 384 ~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~----~~~~~~~~~~i~~~~~s~~~~~l~s~~ 443 (507)
..++|.. |..+.. ....+.|....+..... ...+.+...++..++..|||.++++.+
T Consensus 266 ~G~~~~~-g~~~~~--~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 266 SGIAYAE-GSVWMA--GLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEET-TEEEEE--ESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cceEEEc-Cceeec--cccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 6677763 444444 34455666666654322 223344456799999999998666543
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.05 Score=49.81 Aligned_cols=64 Identities=19% Similarity=0.191 Sum_probs=36.1
Q ss_pred CCCeEEEEeCCCCcEEEEeCCC-ceeEEEEee----cCccEEEEEeeCCEEEEEec-C---------CeEEEEECCCCC
Q psy8285 219 RTTDLAVTNTCTEYIDLWHEQE-ERLIQKLRT----HMHQVIAMCWNGNLLSCGTI-G---------GNILHYDVRTHS 282 (507)
Q Consensus 219 ~~~~l~~~~~~dg~i~iwd~~~-~~~~~~~~~----~~~~v~~~~~~~~~l~~~~~-d---------g~i~i~d~~~~~ 282 (507)
++..++.+|.....+.+||+.+ ...-..+.. .......+..++.+++.|+. + ..+.+||+.+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 4555555544455788888864 122222221 11222334447777877776 2 468899988754
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.63 Score=44.33 Aligned_cols=232 Identities=9% Similarity=0.016 Sum_probs=136.3
Q ss_pred eEEEEeCCCCcEEEEeCCCceeEEEEeecCc---------------------------cEEEEEe-----eCCEEEEEec
Q psy8285 222 DLAVTNTCTEYIDLWHEQEERLIQKLRTHMH---------------------------QVIAMCW-----NGNLLSCGTI 269 (507)
Q Consensus 222 ~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------------------------~v~~~~~-----~~~~l~~~~~ 269 (507)
+.+.+|+..|.|+|+-+.+++.+..+..... --..+++ ||++|+.-..
T Consensus 71 y~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdk 150 (638)
T 3sbq_A 71 YGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDK 150 (638)
T ss_dssp EEEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEET
T ss_pred EEEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecC
Confidence 4445558999999999999988877642110 0124455 6788877764
Q ss_pred -CCeEEEEECCCCCcCceeeecCCCceEEEEEc--CCCCEEEEEeCCcEEEEE----c--CCCCC-----------CCCe
Q psy8285 270 -GGNILHYDVRTHSDYPTAITREGDVVCGLKWS--PNGRYLASGSNNTVKIWD----F--RQLDA-----------KRPQ 329 (507)
Q Consensus 270 -dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~d~~i~i~d----~--~~~~~-----------~~~~ 329 (507)
+..|...+++..+............+.++.|- |+-.+++.++.-.+=+=+ + +..+. .+..
T Consensus 151 an~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~ 230 (638)
T 3sbq_A 151 ANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMA 230 (638)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEE
T ss_pred CCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEE
Confidence 45677888887653222333456678888886 677777766532221110 0 11000 0000
Q ss_pred eeecCCCCCeeEEEEccCCCcEEEEEccCC------------------------------------CC-eEEEEeCCC--
Q psy8285 330 VNNQCHLSAVKAIAWCPWEPTLLATGGGIC------------------------------------DQ-TVRLWNSMN-- 370 (507)
Q Consensus 330 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------------------------------------d~-~i~i~d~~~-- 370 (507)
.... -.+....+...+++.+.++++-.++ ++ .+.+.|.+.
T Consensus 231 ~Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~ 309 (638)
T 3sbq_A 231 FQVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKD 309 (638)
T ss_dssp EEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBT
T ss_pred EEEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccc
Confidence 0000 0112223444666766666663211 11 345555544
Q ss_pred --C-CeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE-------------EEEeeccccceeEEEECC
Q psy8285 371 --G-KEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL-------------IEELKIHQERILSAVLSP 434 (507)
Q Consensus 371 --~-~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~-------------~~~~~~~~~~i~~~~~s~ 434 (507)
+ .....+........+..+|||++++++ |-.+.++.++|+..... ..+... .-.-...+|.+
T Consensus 310 ~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~-GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~ 387 (638)
T 3sbq_A 310 GKDSKFTRYVPVPKNPHGCNTSSDGKYFIAA-GKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDG 387 (638)
T ss_dssp TBCCSSEEEEEESSSCCCEEECTTSCEEEEE-CTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECS
T ss_pred ccCCceEEEEeCCCCCcceeeCCCCCEEEEc-CCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECC
Confidence 2 223333444556788999999999997 77889999999874211 223332 23356789999
Q ss_pred CCCEEEEEeCCCcEEEEecCCC
Q psy8285 435 DQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 435 ~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
+|....|.--|..|.-|++...
T Consensus 388 ~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 388 RGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp SSEEEEEETTTTEEEEEEHHHH
T ss_pred CCceEeeeeecceEEEEeccHH
Confidence 9955556668999999999753
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.41 Score=43.66 Aligned_cols=85 Identities=12% Similarity=0.168 Sum_probs=46.2
Q ss_pred cCCeEEEEECCC--CceeEEEecCCCCCCceEEEEEccCCCeEEEEeCC-C---------CcEEEEeCCCceeEEEE--e
Q psy8285 183 LDTSVYTWNTKT--NKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTC-T---------EYIDLWHEQEERLIQKL--R 248 (507)
Q Consensus 183 ~~~~i~iw~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~-d---------g~i~iwd~~~~~~~~~~--~ 248 (507)
....+.+||+.. .+...+..++........++.+ ++..++.+ +. + ..+.+||..+.+-...- .
T Consensus 29 ~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~G-G~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~ 105 (357)
T 2uvk_A 29 AGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFG-GIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA 105 (357)
T ss_dssp GTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEEC-CEEECTTSCEEECCCEEEEETTTTEEEECSCCC
T ss_pred CCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEc-CCCCCCCccceeeccEEEEeCCCCcEEECCCCC
Confidence 456899999874 5555554443102222233333 45556665 43 2 46889998876533221 1
Q ss_pred -ecCccEEEEEeeCCEEEEEecC
Q psy8285 249 -THMHQVIAMCWNGNLLSCGTIG 270 (507)
Q Consensus 249 -~~~~~v~~~~~~~~~l~~~~~d 270 (507)
.......++..++++++.|+.+
T Consensus 106 p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 106 PMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp SSCCSSEEEEEETTEEEEEECCC
T ss_pred CcccccceEEEECCEEEEEeCcC
Confidence 1122233444678888888754
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=96.29 E-value=0.67 Score=42.71 Aligned_cols=226 Identities=10% Similarity=0.095 Sum_probs=135.0
Q ss_pred CCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-eeEEEEeecC
Q psy8285 174 GYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE-RLIQKLRTHM 251 (507)
Q Consensus 174 s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~-~~~~~~~~~~ 251 (507)
+|.. ++|.-....+.++|+++.+..+...+ ..+|.-=.|-.+. .|+.. .+..|+-|++... .+.+.+..|.
T Consensus 74 nP~~~iiALrag~~lQiFnle~K~klks~~~----~e~VvfWkWis~~-~l~lV--T~taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 74 NPASKVIALKAGKTLQIFNIEMKSKMKAHTM----TDDVTFWKWISLN-TVALV--TDNAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp CSSSSCEEEEETTEEEEEETTTTEEEEEEEC----SSCCCEEEEEETT-EEEEE--CSSEEEEEESSSSCCCEEEEECCG
T ss_pred CCCCcEEEEecCCeEEEEchHHhhhhcceec----CCCceEEEecCCC-eEEEE--cCCeeEEecccCCCCchhheecch
Confidence 4443 77776799999999999988888875 3456667776554 55555 4788999999743 4555555433
Q ss_pred ----ccEEEEEe--eCCEEEEEe-------cCCeEEEEECCCCCcCceeeecCCCceEEEEEcCC---CCEEEEEeC---
Q psy8285 252 ----HQVIAMCW--NGNLLSCGT-------IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN---GRYLASGSN--- 312 (507)
Q Consensus 252 ----~~v~~~~~--~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~d--- 312 (507)
..|..... +.++++..+ -.|.+.+|..+.. ....+.+|......+.+..+ .++++.+..
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 224 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 224 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC--CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc--ccchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 23333333 456655433 2367889998864 36677787665544444322 134555542
Q ss_pred -CcEEEEEcCCC-CCCCCee----e-e---cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-C
Q psy8285 313 -NTVKIWDFRQL-DAKRPQV----N-N---QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-S 381 (507)
Q Consensus 313 -~~i~i~d~~~~-~~~~~~~----~-~---~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~ 381 (507)
+.++|.++... ....+.. . + ....+-..++..++.-..+++... -|.+++||+.++.++..-+-. .
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK---~G~i~lyDleTgt~i~~nrIs~~ 301 (494)
T 1bpo_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---YGYIHLYDLETGTCIYMNRISGE 301 (494)
T ss_dssp CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET---TSEEEEEETTTCCEEEEEECCSS
T ss_pred CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec---CceEEEEecccceeeeeecccCC
Confidence 78999998643 1111110 0 1 112233457777877666666554 899999999999998766544 3
Q ss_pred CeEEEEECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
.|...+-.....-++. -...|.|.-..+..
T Consensus 302 ~iF~t~~~~~~~Gi~~--Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 302 TIFVTAPHEATAGIIG--VNRKGQVLSVCVEE 331 (494)
T ss_dssp CEEEEEEETTTTEEEE--EETTCEEEEEEECT
T ss_pred ceEEecccCCCCcEEE--EccCceEEEEEEcc
Confidence 4443333333333333 23555555544443
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.83 Score=43.55 Aligned_cols=250 Identities=12% Similarity=0.057 Sum_probs=131.7
Q ss_pred cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEc--cCCCeEEEEeCC-------CCcEEEEeCCCceeEEEEeecCcc
Q psy8285 183 LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWK--PRTTDLAVTNTC-------TEYIDLWHEQEERLIQKLRTHMHQ 253 (507)
Q Consensus 183 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~ 253 (507)
.+.+|-..++...+..++.+++ ....+..+.|- |+..|+++. +. ||.. ..+...+....+..-...
T Consensus 151 an~RvAri~l~~~~~d~Ii~iP--n~~~~Hg~~~~~~p~T~yv~~~-~e~~~P~pndg~~--~~~~~~~~y~~f~~iD~~ 225 (638)
T 3sbq_A 151 ANSRVARIRLDIMKCDKMITVP--NVQAIHGLRLQKVPHTKYVFAN-AEFIIPHPNDGKV--FDLQDENSYTMYNAIDAE 225 (638)
T ss_dssp TTTEEEEEETTTTEEEEEEECT--TCSCEEEEEECCSSBCCEEEEE-ECSCEESSCSSSC--CCTTSTTEEEEEEEEETT
T ss_pred CCcceEEEECCcEeeceeEeCC--CCcCcccccccccCCccEEEec-ceeeccCCCCCcc--cccCChhhceEEEEEcCC
Confidence 5678888999999998888887 57789999996 788888877 43 3321 111111111111110000
Q ss_pred EEEEEe----eCCE-EEEEecCCeEEEEECCCCCcCceeee-cCCCceEEEEEc--------CCCCEEEEEeCC-cEEEE
Q psy8285 254 VIAMCW----NGNL-LSCGTIGGNILHYDVRTHSDYPTAIT-REGDVVCGLKWS--------PNGRYLASGSNN-TVKIW 318 (507)
Q Consensus 254 v~~~~~----~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~--------~~~~~l~~~~d~-~i~i~ 318 (507)
-..++| ++++ .+-.+.+|...++..-+.+.-..... .....=..+.|+ .+|++-.. ++ .|.+.
T Consensus 226 tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~--~g~gv~Vi 303 (638)
T 3sbq_A 226 TMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITL--GDSKTPVL 303 (638)
T ss_dssp TCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCC--TTCCCCEE
T ss_pred ccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEE--CCCCeeEE
Confidence 011122 2211 11122223322222221111100000 011111223332 13432211 11 57788
Q ss_pred EcCCCCC-CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC------Ce-------eeeeecCCCeE
Q psy8285 319 DFRQLDA-KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG------KE-------KCHVKTDSQVT 384 (507)
Q Consensus 319 d~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~------~~-------~~~~~~~~~i~ 384 (507)
|.+.... ...+..+..-......+..+|||+++++++-. +.++.++|.+.- +. ....+..-...
T Consensus 304 D~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKL--sptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPl 381 (638)
T 3sbq_A 304 DGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKL--SPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPL 381 (638)
T ss_dssp ECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTT--SSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEE
T ss_pred ccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCC--CCeEEEEEeehhhhhhhccccCcccceEeeccCCCccc
Confidence 8775110 02333333344556689999999988888764 999999998742 11 22333345678
Q ss_pred EEEECCCCCeEEEEeccCCCeEEEEeCCCc----------cEEEEeeccccceeEE-----EECCCCCEEEEEe
Q psy8285 385 SILWSEQYRELVTSHGKQDCSLKMWEYPRL----------HLIEELKIHQERILSA-----VLSPDQTCVAAAS 443 (507)
Q Consensus 385 ~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~----------~~~~~~~~~~~~i~~~-----~~s~~~~~l~s~~ 443 (507)
..+|.++| ..+++ -.-|..|.-|++... ..+..+..|-.+-.-. .-.|||++|++..
T Consensus 382 Ht~Fd~~G-~aYTt-lfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 382 HTTFDGRG-NAYTT-LFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEECSSS-EEEEE-ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred EEEECCCC-ceEee-eeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 89999999 44443 678999999998653 3455555554332211 1256888888764
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.87 Score=43.04 Aligned_cols=103 Identities=8% Similarity=0.086 Sum_probs=60.4
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE--EEee------cCccEEEEEee-----CCEEEEEec------
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ--KLRT------HMHQVIAMCWN-----GNLLSCGTI------ 269 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~--~~~~------~~~~v~~~~~~-----~~~l~~~~~------ 269 (507)
.....|+|.|+|+.+++- ...+.|++++..+++... .+.. .......|+|+ +..|..+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e-~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTE-RATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSCEEEEE-TTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCcEEEEE-cCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 346799999999877665 433579888865554322 2221 24567789995 556555543
Q ss_pred -------CCeEEEEECCCCC----cCceee---e-cCCCceEEEEEcCCCCEEEEEeC
Q psy8285 270 -------GGNILHYDVRTHS----DYPTAI---T-REGDVVCGLKWSPNGRYLASGSN 312 (507)
Q Consensus 270 -------dg~i~i~d~~~~~----~~~~~~---~-~~~~~v~~~~~~~~~~~l~~~~d 312 (507)
...|..++..... .....+ . ........++|.|||.+.++.+|
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 2356666654321 011111 1 11224688999999998777554
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.11 Score=46.59 Aligned_cols=103 Identities=6% Similarity=0.027 Sum_probs=65.1
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEE--ccCCCeEEEEe-CCCCcEEEEeCCCceeEEEEee----c
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAW--KPRTTDLAVTN-TCTEYIDLWHEQEERLIQKLRT----H 250 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~-~~dg~i~iwd~~~~~~~~~~~~----~ 250 (507)
+++++.||.|+-+|..+|+..-.+... ...++....- .+.+..+++.. +.||.|..++..+|.....+.. .
T Consensus 13 V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 13 LIAADVEGGLHAVDRRNGHIIWSIEPE--NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECGG--GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCC--ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 677789999999999999987776643 1112222110 01122344432 4799999999988865544432 1
Q ss_pred CccEEE---EEe-------eCCEEEEEecCCeEEEEECCCCC
Q psy8285 251 MHQVIA---MCW-------NGNLLSCGTIGGNILHYDVRTHS 282 (507)
Q Consensus 251 ~~~v~~---~~~-------~~~~l~~~~~dg~i~i~d~~~~~ 282 (507)
..++.. ... .+..+++++.+|.+...|+++++
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 222221 001 46678899999999999999987
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.93 Score=41.21 Aligned_cols=223 Identities=11% Similarity=0.060 Sum_probs=117.0
Q ss_pred eeeeeCCCC--EEEEEcCCeEEEEECCCCceeE-EEecC---CCCCCceEEEEEccC---CCeEEEEeCC-------CCc
Q psy8285 169 SGLDWGYHD--TLAVALDTSVYTWNTKTNKTQL-LVEYP---TYDNAYISCVAWKPR---TTDLAVTNTC-------TEY 232 (507)
Q Consensus 169 ~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~-~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~~-------dg~ 232 (507)
..|+|.|++ ++++...+.|++++.. +.... +..++ .........++|+|+ +..|.++... ...
T Consensus 21 ~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~ 99 (353)
T 2g8s_A 21 WALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTA 99 (353)
T ss_dssp EEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEE
T ss_pred EEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeE
Confidence 468899986 5566678999999853 33221 11111 002456789999996 5566655122 235
Q ss_pred EEEEeCCCc----eeEEE-Eeec------CccEEEEEe--eCCEEEEEec-------------CCeEEEEECCCCC----
Q psy8285 233 IDLWHEQEE----RLIQK-LRTH------MHQVIAMCW--NGNLLSCGTI-------------GGNILHYDVRTHS---- 282 (507)
Q Consensus 233 i~iwd~~~~----~~~~~-~~~~------~~~v~~~~~--~~~~l~~~~~-------------dg~i~i~d~~~~~---- 282 (507)
|..|+.... ..... +... ......+.| ++.+.++.+. .|.|.-++....-
T Consensus 100 v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~n 179 (353)
T 2g8s_A 100 VGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDN 179 (353)
T ss_dssp EEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTC
T ss_pred EEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCC
Confidence 666666432 11111 1111 111245777 6755555433 2467777765420
Q ss_pred --------cCceeeecCCCceEEEEEcC-CCCEEEEEeC--CcEEEEEcCCCCC--------------------------
Q psy8285 283 --------DYPTAITREGDVVCGLKWSP-NGRYLASGSN--NTVKIWDFRQLDA-------------------------- 325 (507)
Q Consensus 283 --------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~d--~~i~i~d~~~~~~-------------------------- 325 (507)
.......++ .....++|.| +++++++-.. +.=.|.-+..+..
T Consensus 180 pf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~ 258 (353)
T 2g8s_A 180 PFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVA 258 (353)
T ss_dssp TTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCT
T ss_pred CCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCC
Confidence 111222233 3467899999 5655554332 2222222222110
Q ss_pred --CCCeeeecCCCCCeeEEEEcc-------CCCcEEEEEccCCCCeEEEEeCCCCCeeee--e-ec-CCCeEEEEECCCC
Q psy8285 326 --KRPQVNNQCHLSAVKAIAWCP-------WEPTLLATGGGICDQTVRLWNSMNGKEKCH--V-KT-DSQVTSILWSEQY 392 (507)
Q Consensus 326 --~~~~~~~~~~~~~v~~~~~~~-------~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~--~-~~-~~~i~~~~~s~~~ 392 (507)
..++..+. +......+.|.. ++ .++++.-. .+.|...++..++.... + .. ...+..+++.|||
T Consensus 259 ~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g-~l~v~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG 334 (353)
T 2g8s_A 259 GTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQ-KLFIGALK--DKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDG 334 (353)
T ss_dssp TSCCCSEEES-SCCCEEEEEEECCSSSGGGTT-EEEEEETT--TTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTS
T ss_pred CccCCeEEeC-CCcCcceeEEECCccCcccCC-cEEEEEcc--CCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCC
Confidence 11122222 233566788864 24 55555443 77888888776543322 2 12 2578999999999
Q ss_pred CeEEE
Q psy8285 393 RELVT 397 (507)
Q Consensus 393 ~~l~~ 397 (507)
..+++
T Consensus 335 ~lyv~ 339 (353)
T 2g8s_A 335 YLYVL 339 (353)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 86665
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.23 Score=44.55 Aligned_cols=185 Identities=10% Similarity=-0.018 Sum_probs=96.1
Q ss_pred CeEEEEeCCCCcEEEEeCCCceeEEEEeec-CccEEEEEe-----eCCEEEEE-ecCCeEEEEECCCCCcCceeeec---
Q psy8285 221 TDLAVTNTCTEYIDLWHEQEERLIQKLRTH-MHQVIAMCW-----NGNLLSCG-TIGGNILHYDVRTHSDYPTAITR--- 290 (507)
Q Consensus 221 ~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~-----~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~--- 290 (507)
..++++ +.||.|.-+|..+|+.+..+... ..++....- ++..++.. +.||.|+.++..++... ..+..
T Consensus 11 ~~V~v~-t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~-~~~~~~~l 88 (339)
T 2be1_A 11 DILIAA-DVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK-LPLSIRQL 88 (339)
T ss_dssp EEEEEE-ETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE-EEEEHHHH
T ss_pred CEEEEE-eCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE-eeeccccc
Confidence 356666 89999999999999999888754 123322221 22333333 68999999998776321 11110
Q ss_pred -CCCceEE---EEE-----cCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCC--CC-----eeEEEEc-----cCC
Q psy8285 291 -EGDVVCG---LKW-----SPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHL--SA-----VKAIAWC-----PWE 348 (507)
Q Consensus 291 -~~~~v~~---~~~-----~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~--~~-----v~~~~~~-----~~~ 348 (507)
...++.. ... ...+..+++|+ ++.+...|++++ +.+..+.... +. ..|.... ..+
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG---~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNG---EIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTC---CEEEEESTTCBCC--------------------C
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCC---cEEEEEecCCCcccccccccccccccccccccCC
Confidence 1112221 000 00344666676 699999999998 6666654221 00 0111110 112
Q ss_pred CcEEEEEccCCCCeEEEEeCCCCCeeeeeecC----CCeE-----EEEECCCCCeEEEEeccCCCeEEEEeCCCccEEE
Q psy8285 349 PTLLATGGGICDQTVRLWNSMNGKEKCHVKTD----SQVT-----SILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIE 418 (507)
Q Consensus 349 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----~~i~-----~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~ 418 (507)
..+++ +.. +..+.+.+ ++|+ +..+... ..+. .-..+.|+.+++ ++.||.|.-+|..+++.+.
T Consensus 166 ~~v~i-g~~--~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~---~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 166 NMIVI-GKT--IFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIA---PFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CEEEE-EEE--EEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEE---EETTTEEEEECSTTCCEEE
T ss_pred CeEEE-ecc--eEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEE---ECCCCEEEEEECCCCcEEE
Confidence 23333 332 66777766 4554 3222110 0000 000123456644 4568888888888887765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.66 Score=49.64 Aligned_cols=222 Identities=9% Similarity=0.068 Sum_probs=123.9
Q ss_pred CEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-eeEEEEeec----C
Q psy8285 177 DTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE-RLIQKLRTH----M 251 (507)
Q Consensus 177 ~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~-~~~~~~~~~----~ 251 (507)
.++|.-.+..+.|+|+++.+..+.+.+ ..+|.-=.|-... .|+.. .+..|+-|++... .+.+.+..| .
T Consensus 78 ~iiALrag~~lQiFnl~~k~klks~~~----~e~VvfWkWis~~-~l~lV--T~~aVyHW~~~~~s~P~k~fdR~~~L~~ 150 (1630)
T 1xi4_A 78 KVIALKAGKTLQIFNIEMKSKMKAHTM----TDDVTFWKWISLN-TVALV--TDNAVYHWSMEGESQPVKMFDRHSSLAG 150 (1630)
T ss_pred ceEEEecCCeEEEeehHHhhhhccccc----CCCceEEEecCCC-eeEEE--cCCeEEEeccCCCCccHHHHhcchhccc
Confidence 377777789999999998887777765 3457777776554 44444 4778999999642 333333323 2
Q ss_pred ccEEEEEe--eCCEEEEEe-------cCCeEEEEECCCCCcCceeeecCCCceEEEEEcC---CCCEEEEEeC----CcE
Q psy8285 252 HQVIAMCW--NGNLLSCGT-------IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP---NGRYLASGSN----NTV 315 (507)
Q Consensus 252 ~~v~~~~~--~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~d----~~i 315 (507)
..|..... +.++++..+ -.|.+.+|...... ...+.+|......+.... ...+++.+.. +.+
T Consensus 151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~--sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kL 228 (1630)
T 1xi4_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKL 228 (1630)
T ss_pred CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc--chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceE
Confidence 23333333 455555433 34788899887643 555666655544333321 2234444432 788
Q ss_pred EEEEcCCC-CCCCCe-----eeecC---CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEE
Q psy8285 316 KIWDFRQL-DAKRPQ-----VNNQC---HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTS 385 (507)
Q Consensus 316 ~i~d~~~~-~~~~~~-----~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~ 385 (507)
+|.++... ....+. ..+.. ...-..++..++.-.-+++... -|.+++||+.++.++..-+-. ..|..
T Consensus 229 hi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk---~G~~~~~d~~t~~~i~~~ris~~~iF~ 305 (1630)
T 1xi4_A 229 HIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---YGYIHLYDLETGTCIYMNRISGETIFV 305 (1630)
T ss_pred EEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec---CceEEEEecccchhhhhccccCCceEE
Confidence 99888543 100111 00110 1222345666666555555554 899999999999887654433 23333
Q ss_pred EEECC-CCCeEEEEeccCCCeEEEEeCCC
Q psy8285 386 ILWSE-QYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 386 ~~~s~-~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
.+-.. .+..+.+ ...|.|.-..+..
T Consensus 306 ~~~~~~~~g~~~v---nr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 306 TAPHEATAGIIGV---NRKGQVLSVCVEE 331 (1630)
T ss_pred eccCCCCCceEEE---cCCceEEEEEEcc
Confidence 33332 2333333 3455554444433
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=95.52 E-value=2.5 Score=43.05 Aligned_cols=261 Identities=11% Similarity=0.091 Sum_probs=148.5
Q ss_pred ceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 167 YTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
.|.+|.-..+| +..++.+ -+..||-...+ ............|.++.-..++ .|.++ +.+| +..||..+.+...
T Consensus 23 ~V~~I~qD~~G~lWigT~~-GL~ryDG~~~~--~~~~~~~~~~~~i~~i~~d~~g-~lWig-T~~G-l~~yd~~~~~f~~ 96 (758)
T 3ott_A 23 VVSCFLQDSEGLIWIGSNK-GLFSYDGYSTQ--QHFTYGENNNTRIYCGVIIDNT-YLYMG-TDNG-ILVYNYRADRYEQ 96 (758)
T ss_dssp CEEEEEECTTSCEEEEESS-CEEEECSSCEE--ECSCTTSTTSSCEEEEEEETTT-EEEEE-ETTE-EEEEETTTTEECC
T ss_pred eEEEEEECCCCCEEEEECC-CccccCCCceE--EEEccCCCCCceEEEEEEcCCC-cEEEE-eCCC-eEEEeCCCCEEEC
Confidence 47777777777 4555554 46677743211 1111111034568888877766 55555 4554 7899988764432
Q ss_pred EEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeee-----cCCCceEEEEEcCCCCEEEEEeCCcEEEEEc
Q psy8285 246 KLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAIT-----REGDVVCGLKWSPNGRYLASGSNNTVKIWDF 320 (507)
Q Consensus 246 ~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~ 320 (507)
........|.++..++..|..++.+ -+..+|..+.. ...+. .....|.++....++++.+. +++-+..++.
T Consensus 97 ~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~Gl~~~~~ 172 (758)
T 3ott_A 97 PETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRK--LTSFDTRRNGLPNNTIYSIIRTKDNQIYVG-TYNGLCRYIP 172 (758)
T ss_dssp CSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCC--EEEECHHHHCCSCSCEEEEEECTTCCEEEE-ETTEEEEEET
T ss_pred cccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCe--EEEeccCCCCcCCCeEEEEEEcCCCCEEEE-eCCCHhhCcc
Confidence 1111233466665555566667765 67888887644 22221 12346888888888876664 4445777887
Q ss_pred CCCCCCCCeeeecC------CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeee-cCCCeEEEEECCCCC
Q psy8285 321 RQLDAKRPQVNNQC------HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYR 393 (507)
Q Consensus 321 ~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~i~~~~~s~~~~ 393 (507)
... ....+.. ....|.++...+++..+.+ +. ++-+..+|..+++...... ....|.++...++|.
T Consensus 173 ~~~----~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWi-gt---~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~ 244 (758)
T 3ott_A 173 SNG----KFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWI-GT---EGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGD 244 (758)
T ss_dssp TTT----EEEEECCCCCTTCSSCCEEEEEEETTTTEEEE-EE---EEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCC
T ss_pred CCC----ceEEecCCCccccccceeEEEEEECCCCEEEE-EE---CCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCC
Confidence 653 1221111 1234788887776654444 32 3458888987665332111 124588888888887
Q ss_pred eEEEEeccCCCeEEEEeCCCccEEEEee-------ccccceeEEEECCCCCEEEEEeCCCcEEEE
Q psy8285 394 ELVTSHGKQDCSLKMWEYPRLHLIEELK-------IHQERILSAVLSPDQTCVAAASADETISIW 451 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~~~~~~~~~-------~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw 451 (507)
..+. +. +-+.+++..+.+...... -....|.++....+|.+.+ |+..| +.++
T Consensus 245 lWig---T~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~ 303 (758)
T 3ott_A 245 LLAG---TD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLS 303 (758)
T ss_dssp EEEE---ET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEE
T ss_pred EEEE---eC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-cccc
Confidence 7665 33 458888876654322111 0124588888888877554 44556 5444
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.48 E-value=1.3 Score=39.47 Aligned_cols=212 Identities=9% Similarity=0.047 Sum_probs=98.0
Q ss_pred cEEEEeCCCceeEEE-Eee-cCccEEEEEe-eCCEEEEEec----CC-------eEEEEECCCCCcCc-eeeecCCCceE
Q psy8285 232 YIDLWHEQEERLIQK-LRT-HMHQVIAMCW-NGNLLSCGTI----GG-------NILHYDVRTHSDYP-TAITREGDVVC 296 (507)
Q Consensus 232 ~i~iwd~~~~~~~~~-~~~-~~~~v~~~~~-~~~~l~~~~~----dg-------~i~i~d~~~~~~~~-~~~~~~~~~v~ 296 (507)
.+..||..+.+-... +.. ....-.++.. ++.+++.|+. ++ .+.+||..+.+-.. ..+........
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 488999988765442 111 1111223333 7888888873 12 17788887654110 01111111112
Q ss_pred EEEEcCCCCEEEEEe-C-------CcEEEEEcCCCCCCCCeeeecCCCCC-e-eEEEEccCCCcEEEEEccCC----CCe
Q psy8285 297 GLKWSPNGRYLASGS-N-------NTVKIWDFRQLDAKRPQVNNQCHLSA-V-KAIAWCPWEPTLLATGGGIC----DQT 362 (507)
Q Consensus 297 ~~~~~~~~~~l~~~~-d-------~~i~i~d~~~~~~~~~~~~~~~~~~~-v-~~~~~~~~~~~~~~~~~~~~----d~~ 362 (507)
.+.+ ++++++.|+ + ..+.+||+.+. .-........+ . .++.. .++ .+++.++... -..
T Consensus 105 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~----~W~~~~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 105 LGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAA----KWSEVKNLPIKVYGHNVIS-HNG-MIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp EEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTT----EEEEECCCSSCEESCEEEE-ETT-EEEEECCEESSSCBCCC
T ss_pred eEEE--CCEEEEEcCccCCCCcccceEEEEeCCCC----CEeECCCCCCcccccEEEE-ECC-EEEEEcCCCCCCCccce
Confidence 2222 566766665 3 35788888764 11111111111 0 11222 234 6766664211 245
Q ss_pred EEEEeCCCCCeeee--eecCC-CeEEEEECCCCCeEEEEeccCC-----CeEEEEeCCCcc--EEEEeeccccceeEEEE
Q psy8285 363 VRLWNSMNGKEKCH--VKTDS-QVTSILWSEQYRELVTSHGKQD-----CSLKMWEYPRLH--LIEELKIHQERILSAVL 432 (507)
Q Consensus 363 i~i~d~~~~~~~~~--~~~~~-~i~~~~~s~~~~~l~~~~g~~d-----~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~ 432 (507)
+.+||+.+.+-... +.... ....+.+ +++.++. |+.+ ..+.+||..+.+ .+..+......-..+.
T Consensus 177 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~--GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~- 251 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIA--GGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS- 251 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEE--EEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE-
T ss_pred EEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEE--cCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE-
Confidence 89999887653222 11111 1222222 4555555 3322 357889987653 2222221111111222
Q ss_pred CCCCCEEEEEeCC--------------CcEEEEecCCCC
Q psy8285 433 SPDQTCVAAASAD--------------ETISIWNCFPRD 457 (507)
Q Consensus 433 s~~~~~l~s~~~d--------------g~i~iw~~~~~~ 457 (507)
.+++.++.|+.+ ..+.+||+.+.+
T Consensus 252 -~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 252 -LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp -ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred -ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 256666666643 346677766543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.14 E-value=1.6 Score=38.71 Aligned_cols=183 Identities=9% Similarity=0.072 Sum_probs=86.7
Q ss_pred EEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-----C-------CcEEEEEcCCCCCCCCee
Q psy8285 263 LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-----N-------NTVKIWDFRQLDAKRPQV 330 (507)
Q Consensus 263 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----d-------~~i~i~d~~~~~~~~~~~ 330 (507)
+++.|+ ..+.+||..+.+-....+..............++++++.|+ + ..+..||..+..- ..+.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W-~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW-LGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE-EECC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE-EECC
Confidence 344454 57889998876522222211112222233345677777766 1 1277888876411 0111
Q ss_pred eecCCCCCeeEEEEccCCCcEEEEEcc------CCCCeEEEEeCCCCCeee--eeecCC-CeEEEEECCCCCeEEEEecc
Q psy8285 331 NNQCHLSAVKAIAWCPWEPTLLATGGG------ICDQTVRLWNSMNGKEKC--HVKTDS-QVTSILWSEQYRELVTSHGK 401 (507)
Q Consensus 331 ~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~d~~i~i~d~~~~~~~~--~~~~~~-~i~~~~~s~~~~~l~~~~g~ 401 (507)
.+.........+.+ +..+++.|+. ..-..+.+||..+.+-.. .+.... ....+. .+++.++. |+
T Consensus 84 ~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~--GG 156 (315)
T 4asc_A 84 PLPSPRCLFGLGEA---LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMDLVYVI--GG 156 (315)
T ss_dssp CBSSCEESCEEEEE---TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEE--CC
T ss_pred CCCcchhceeEEEE---CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECCEEEEE--eC
Confidence 11111111112222 3367776652 112468999988764222 121111 122222 34555555 44
Q ss_pred C-C-----CeEEEEeCCCcc--EEEEeeccccceeEEEECCCCCEEEEEeCCC-----cEEEEecCCCC
Q psy8285 402 Q-D-----CSLKMWEYPRLH--LIEELKIHQERILSAVLSPDQTCVAAASADE-----TISIWNCFPRD 457 (507)
Q Consensus 402 ~-d-----~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg-----~i~iw~~~~~~ 457 (507)
. + ..+.+||..+.+ .+..+......-..+. -+++.++.|+.++ .+.+||+.+.+
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 3 2 468999987653 2222221111112222 2667777777654 47788887654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.9 Score=45.72 Aligned_cols=186 Identities=13% Similarity=0.157 Sum_probs=98.0
Q ss_pred CeEEEEECCCCceeEEE-e-----cCCCCCCceEEEEEccCCCeEEEEeCCC-----CcEEEEeCCCceeEEE--EeecC
Q psy8285 185 TSVYTWNTKTNKTQLLV-E-----YPTYDNAYISCVAWKPRTTDLAVTNTCT-----EYIDLWHEQEERLIQK--LRTHM 251 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~-~-----~~~~~~~~v~~~~~~~~~~~l~~~~~~d-----g~i~iwd~~~~~~~~~--~~~~~ 251 (507)
..+.+||+.+++..... . .+. ....-..+.+..++..++.||... ..+.+||..+.+-... +....
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~-~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R 490 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPV-ARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR 490 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCC-CCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCc-cccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc
Confidence 46899999988876665 3 221 222233333322666666663221 3588999887543322 22222
Q ss_pred ccEEEEEe-eCCEEEEEecCC--eEEEEECCCCCcCcee----eecCCCceEEEEEcCC-CCEEEEEe-C-------CcE
Q psy8285 252 HQVIAMCW-NGNLLSCGTIGG--NILHYDVRTHSDYPTA----ITREGDVVCGLKWSPN-GRYLASGS-N-------NTV 315 (507)
Q Consensus 252 ~~v~~~~~-~~~~l~~~~~dg--~i~i~d~~~~~~~~~~----~~~~~~~v~~~~~~~~-~~~l~~~~-d-------~~i 315 (507)
..-.++.+ ++.+++.|+.++ .+.+||..+..-.... ..........+.+..+ +++++.|+ + ..+
T Consensus 491 ~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v 570 (695)
T 2zwa_A 491 FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKA 570 (695)
T ss_dssp BSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEE
T ss_pred ccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcE
Confidence 23344554 788888888765 6899998875411110 1111222233555555 66777765 2 358
Q ss_pred EEEEcCCCCC-----CCCeeeec-CCCCCeeEEEEccCCCcEEEEEccC------CCCeEEEEeCCCCCe
Q psy8285 316 KIWDFRQLDA-----KRPQVNNQ-CHLSAVKAIAWCPWEPTLLATGGGI------CDQTVRLWNSMNGKE 373 (507)
Q Consensus 316 ~i~d~~~~~~-----~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~------~d~~i~i~d~~~~~~ 373 (507)
.+||+.+... ...+.... ...... ++....++ .+++.|+.+ ....+.+||+.+.+-
T Consensus 571 ~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 571 IIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPR-KLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp EEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETT-EEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred EEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCC-EEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 8999987631 01111111 111111 22222223 677776532 134689999987653
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=94.86 E-value=1.8 Score=37.77 Aligned_cols=227 Identities=11% Similarity=0.030 Sum_probs=119.8
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceee
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAI 288 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 288 (507)
..|..++... ...++. . ||.|+.|-......+..-......|..++......+.-. ||.|+.|-.......-. .
T Consensus 24 ~~i~~ia~G~--~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~-P 97 (282)
T 3qhy_B 24 SGVDAIAGGY--FHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV-P 97 (282)
T ss_dssp SSCCEEEECS--SEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC-C
T ss_pred CCCcEEEeCC--CeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC-C
Confidence 3566666543 344444 5 899999975543222111122346777777444433345 99999998775432211 1
Q ss_pred ecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeC
Q psy8285 289 TREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNS 368 (507)
Q Consensus 289 ~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~ 368 (507)
......|..++...+...+++ ++.|+.|-...... +-........|..++.... +.++. . |+.+..|-.
T Consensus 98 ~~~~~~v~~ia~G~~hs~al~--~G~v~~wG~n~~gq---lg~~~~~~~~i~~i~~G~~--~~~~l-~---~G~v~~wG~ 166 (282)
T 3qhy_B 98 AEARSGVDAIAAGAWASYALK--DGKVIAWGDDSDGQ---TTVPAEAQSGVTALDGGVY--TALAV-K---NGGVIAWGD 166 (282)
T ss_dssp GGGSSSEEEEEEETTEEEEEE--TTEEEEEECCTTST---TSCCGGGGSSEEEEEECSS--EEEEE-E---TTEEEEEEC
T ss_pred cccCCCeEEEECcCCEEEEEe--CCeEEEecCCCCCc---CCCCccCCCCeEEEEcccC--EEEEE-E---CCEEEEecC
Confidence 112346777777655444444 89999997655311 1111112345777765443 22322 2 688888876
Q ss_pred CCCCeee-eeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCc
Q psy8285 369 MNGKEKC-HVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADET 447 (507)
Q Consensus 369 ~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~ 447 (507)
.....+. .......|..++.-. .+.++ - .||.|+.|-....-.+..-......|..++...... ++ -. ||.
T Consensus 167 n~~gqlg~p~~~~~~v~~i~~G~--~hs~a--l-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~-~a-l~-~g~ 238 (282)
T 3qhy_B 167 NYFGQTTVPAEAQSGVDDVAGGI--FHSLA--L-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYS-LA-LK-NGK 238 (282)
T ss_dssp CTTSTTSCCGGGGSSEEEEEECS--SEEEE--E-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCE-EE-EE-TTE
T ss_pred CCCCCCCCceecCCCeEEEEecC--CEEEE--E-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEE-EE-EE-CCE
Confidence 4422211 111124566665533 23333 3 488899987544322211111234577777654433 33 33 999
Q ss_pred EEEEecCCCCccc
Q psy8285 448 ISIWNCFPRDKKR 460 (507)
Q Consensus 448 i~iw~~~~~~~~~ 460 (507)
|+.|=.....+..
T Consensus 239 v~~wG~n~~gq~~ 251 (282)
T 3qhy_B 239 VIAWGSSRTAPSS 251 (282)
T ss_dssp EEEESTTCCCCGG
T ss_pred EEEecCCCCcccc
Confidence 9999876654443
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=2.2 Score=42.89 Aligned_cols=194 Identities=12% Similarity=0.047 Sum_probs=100.8
Q ss_pred cCCCeEEEEeCC----CCcEEEEeCCCceeEEEE-e-------ecCccEEEEEe--eCCEEEEEecCC------eEEEEE
Q psy8285 218 PRTTDLAVTNTC----TEYIDLWHEQEERLIQKL-R-------THMHQVIAMCW--NGNLLSCGTIGG------NILHYD 277 (507)
Q Consensus 218 ~~~~~l~~~~~~----dg~i~iwd~~~~~~~~~~-~-------~~~~~v~~~~~--~~~~l~~~~~dg------~i~i~d 277 (507)
.++..++.| +. -..+.+||..+.+-...- . .....-..+.. ++.+++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~G-G~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMG-GSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEEC-CBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEEC-CCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence 455566666 43 246889998876543332 1 11223345556 777778877543 578889
Q ss_pred CCCCCcC-ceeeecCCCceEEEEEcCCCCEEEEEe-C--CcEEEEEcCCCCCCCCeee---ecCCCCCeeEEEEccCCCc
Q psy8285 278 VRTHSDY-PTAITREGDVVCGLKWSPNGRYLASGS-N--NTVKIWDFRQLDAKRPQVN---NQCHLSAVKAIAWCPWEPT 350 (507)
Q Consensus 278 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~-d--~~i~i~d~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~ 350 (507)
..+..-. ...+..... -.+++...++++++.|+ + +.+.+||+.+..-. .+.. .........++.+..+...
T Consensus 475 ~~t~~W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~r~~~~a~v~~~~~~~ 552 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK-DVTPKDEFFQNSLVSAGLEFDPVSKQ 552 (695)
T ss_dssp TTTTEEEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEE-ECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred CCCCcEEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceE-EccCCCCCCCcccceeEEEEeCCCCE
Confidence 8875311 111111111 12233334788888887 3 47999998875110 1110 1112222234555655346
Q ss_pred EEEEEccCCC-----CeEEEEeCCCCCe-----eeeee----cCCCeEEEEECCCCCeEEEEeccC--------CCeEEE
Q psy8285 351 LLATGGGICD-----QTVRLWNSMNGKE-----KCHVK----TDSQVTSILWSEQYRELVTSHGKQ--------DCSLKM 408 (507)
Q Consensus 351 ~~~~~~~~~d-----~~i~i~d~~~~~~-----~~~~~----~~~~i~~~~~s~~~~~l~~~~g~~--------d~~i~v 408 (507)
+++.|+...+ ..+.+||+.+.+- -..+. ....-.++....+++.++. |+. ...+.+
T Consensus 553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~--GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIV--GGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEE--CCBCSSCCCCTTTSEEE
T ss_pred EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEE--CCccCCCCCCCCCeEEE
Confidence 7777753222 4689999988761 11111 1111112223333555555 442 356999
Q ss_pred EeCCCccE
Q psy8285 409 WEYPRLHL 416 (507)
Q Consensus 409 ~d~~~~~~ 416 (507)
||..+.+-
T Consensus 631 yd~~t~~W 638 (695)
T 2zwa_A 631 LDPLSETL 638 (695)
T ss_dssp EETTTTEE
T ss_pred EECCCCeE
Confidence 99887643
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.3 Score=40.43 Aligned_cols=102 Identities=10% Similarity=0.006 Sum_probs=65.0
Q ss_pred CCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee------eeecC--CCeEEEEECCCCCeEEEEeccCCCeEEE
Q psy8285 337 SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC------HVKTD--SQVTSILWSEQYRELVTSHGKQDCSLKM 408 (507)
Q Consensus 337 ~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~------~~~~~--~~i~~~~~s~~~~~l~~~~g~~d~~i~v 408 (507)
..+..++|+|++ .|.++ . ++.++-.+..+.+... .+... .....+.|.|+|.+.++ .||.|+-
T Consensus 41 ~~~~~laf~P~G-~LYaV-~---~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav----~dG~iyr 111 (236)
T 1tl2_A 41 SNFKFLFLSPGG-ELYGV-L---NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV----SKDKLYK 111 (236)
T ss_dssp TTCSEEEECTTS-CEEEE-E---TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE----ETTEEEE
T ss_pred ccceeEEECCCc-cEEEE-e---CCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe----CCCEEEE
Confidence 467799999987 56666 4 7888887765533221 12111 22578999999988776 3699988
Q ss_pred EeCCCccEEE------Ee-eccccceeEEEECCCCCEEEEEeCCCcEE
Q psy8285 409 WEYPRLHLIE------EL-KIHQERILSAVLSPDQTCVAAASADETIS 449 (507)
Q Consensus 409 ~d~~~~~~~~------~~-~~~~~~i~~~~~s~~~~~l~s~~~dg~i~ 449 (507)
++-.+...-. .+ ..-=..+..|.|.|+|.+.+.. |+.++
T Consensus 112 ~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 112 ASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp ESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred eCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 8764321110 11 1112467899999999876665 77743
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.24 E-value=3.7 Score=38.70 Aligned_cols=100 Identities=13% Similarity=0.175 Sum_probs=58.5
Q ss_pred eeeeeCCCC-EEEEEcCC-eEEEEECCCCceeEEEecCCC-----CCCceEEEEEccC---CCeEEEEeCC---------
Q psy8285 169 SGLDWGYHD-TLAVALDT-SVYTWNTKTNKTQLLVEYPTY-----DNAYISCVAWKPR---TTDLAVTNTC--------- 229 (507)
Q Consensus 169 ~~~~~s~~~-~~~~~~~~-~i~iw~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~---~~~l~~~~~~--------- 229 (507)
..|+|.|++ ++++...+ .|++++..+++...+..+... .......|+|+|+ +..|.++.+.
T Consensus 30 ~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~ 109 (454)
T 1cru_A 30 HALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKE 109 (454)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CC
T ss_pred eEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccc
Confidence 469999998 66666664 799998766665554444310 2456789999996 6666665222
Q ss_pred ---CCcEEEEeCCCc--e-----eEE-EEee-cCccEEEEEe--eCCEEEEEe
Q psy8285 230 ---TEYIDLWHEQEE--R-----LIQ-KLRT-HMHQVIAMCW--NGNLLSCGT 268 (507)
Q Consensus 230 ---dg~i~iwd~~~~--~-----~~~-~~~~-~~~~v~~~~~--~~~~l~~~~ 268 (507)
...|.-++.... + .+. .+.. .......|.| +|.+.++.+
T Consensus 110 ~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 110 LPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp SCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred cccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 235555654321 1 111 1221 1234577888 677666654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=93.75 E-value=3.7 Score=36.94 Aligned_cols=224 Identities=14% Similarity=0.127 Sum_probs=120.8
Q ss_pred eeeeeCCCC-EEEEEc-CCeEEEEECCCCceeEEEecC----CCCCCceEEEEEccC---CCeEEEEe--CCCCcEEEEe
Q psy8285 169 SGLDWGYHD-TLAVAL-DTSVYTWNTKTNKTQLLVEYP----TYDNAYISCVAWKPR---TTDLAVTN--TCTEYIDLWH 237 (507)
Q Consensus 169 ~~~~~s~~~-~~~~~~-~~~i~iw~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~~--~~dg~i~iwd 237 (507)
..|+|.|++ ++++.. .|.|++++..+++...+..++ . .......|+++|+ +..|.+.- ..++.|.-|.
T Consensus 35 ~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~-g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~ 113 (347)
T 3das_A 35 WGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPS-GEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRML 113 (347)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCB-TTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEE
T ss_pred eEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeec-CCCCceeeEeccccccCCEEEEEEecCCCCEEEEEE
Confidence 469999998 666666 899999987766654443321 1 3567899999996 44555431 2345666666
Q ss_pred CCCc----------eeE-EEEee-cCccEEEEEe--eCCEEEEEec-------------CCeEEEEECCCCC-------c
Q psy8285 238 EQEE----------RLI-QKLRT-HMHQVIAMCW--NGNLLSCGTI-------------GGNILHYDVRTHS-------D 283 (507)
Q Consensus 238 ~~~~----------~~~-~~~~~-~~~~v~~~~~--~~~~l~~~~~-------------dg~i~i~d~~~~~-------~ 283 (507)
...+ +.+ ..+.. .......|.| |+.+.++.+. .|.|.-.+....- .
T Consensus 114 ~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~ 193 (347)
T 3das_A 114 YDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPG 193 (347)
T ss_dssp BCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTT
T ss_pred eCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCC
Confidence 5441 111 12221 1112345677 6776666442 3556555654320 0
Q ss_pred CceeeecCCCceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCC---------------CCCCeeeecCCCCCeeEEEEcc
Q psy8285 284 YPTAITREGDVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLD---------------AKRPQVNNQCHLSAVKAIAWCP 346 (507)
Q Consensus 284 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~---------------~~~~~~~~~~~~~~v~~~~~~~ 346 (507)
......++.+ ...++|+|++++.++-. ++.=.|--+..+. ...++..+..+......++|..
T Consensus 194 ~~i~a~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~ 272 (347)
T 3das_A 194 SPVYSYGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE 272 (347)
T ss_dssp CCEEEBCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET
T ss_pred CeEEeeCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc
Confidence 1122234443 45799999988766643 3323333333321 1122333332223556777763
Q ss_pred CCCcEEEEEccCCCCeEEEEeCCCCCe----eeeeec-CCCeEEEEECCCCCeEEEE
Q psy8285 347 WEPTLLATGGGICDQTVRLWNSMNGKE----KCHVKT-DSQVTSILWSEQYRELVTS 398 (507)
Q Consensus 347 ~~~~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~~-~~~i~~~~~s~~~~~l~~~ 398 (507)
+ .++...-. .+.|....+..... ...+.. ...+..++..|||..++++
T Consensus 273 -g-~~~~~~l~--~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~t 325 (347)
T 3das_A 273 -G-SVWMAGLR--GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVT 325 (347)
T ss_dssp -T-EEEEEEST--TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEE
T ss_pred -C-ceeecccc--CCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEE
Confidence 4 45554432 45565556554432 222322 2578999999998877664
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=93.73 E-value=6.8 Score=39.86 Aligned_cols=267 Identities=8% Similarity=0.058 Sum_probs=149.2
Q ss_pred ceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCC---CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 167 YTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTY---DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 167 ~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
.|.++.-..++ +..++. +.|..++..+++.... ..+.. ....|.++...+++..|.++ +. +-+..+|..+++
T Consensus 147 ~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~-~~~~~~~~~~~~i~~i~~d~~~~~lWig-t~-~Gl~~~~~~~~~ 222 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGTY-NGLCRYIPSNGKFEGI-PLPVHSSQSNLFVNSLLEDTTRQCVWIG-TE-GYLFQYFPSTGQ 222 (758)
T ss_dssp CEEEEEECTTCCEEEEET-TEEEEEETTTTEEEEE-CCCCCTTCSSCCEEEEEEETTTTEEEEE-EE-EEEEEEETTTTE
T ss_pred eEEEEEEcCCCCEEEEeC-CCHhhCccCCCceEEe-cCCCccccccceeEEEEEECCCCEEEEE-EC-CCCeEEcCCCCe
Confidence 35566666666 555554 5688899877664332 22110 12348888888777766666 43 468889987765
Q ss_pred eEEEEeecCccEEEEEee-CCEEEEEecCCeEEEEECCCCCcCceeee--------cCCCceEEEEEcCCCCEEEEEeCC
Q psy8285 243 LIQKLRTHMHQVIAMCWN-GNLLSCGTIGGNILHYDVRTHSDYPTAIT--------REGDVVCGLKWSPNGRYLASGSNN 313 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~d~ 313 (507)
...........|.++..+ ...|..|+. +-+.+++..+.. ...+. -....|.++....+|.+-+....|
T Consensus 223 ~~~~~~l~~~~i~~i~~d~~g~lWigT~-~Gl~~~~~~~~~--~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G 299 (758)
T 3ott_A 223 IKQTEAFHNNSIKSLALDGNGDLLAGTD-NGLYVYHNDTTP--LQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG 299 (758)
T ss_dssp EEEEEEEEEEEEEEEEECTTCCEEEEET-TEEEEECCTTSC--CEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS
T ss_pred EEeccCCCCCeEEEEEEcCCCCEEEEeC-CceeEEecCCCc--EEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc
Confidence 433222223457777774 344555564 457788876543 12221 123458888888887765544345
Q ss_pred cEEEEEcCCCCCCCCeeee-----cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC--eeeeee--------
Q psy8285 314 TVKIWDFRQLDAKRPQVNN-----QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK--EKCHVK-------- 378 (507)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~-------- 378 (507)
+.++..... ...... ......|.++.-..+|. +.+... + -+..++..+++ ....+.
T Consensus 300 -l~~~~~~~~---~~~~~~~~~~~~~~~~~v~~i~~D~~g~-lWiGt~---~-Gl~~~~~~~~~~~~~~~~~~~~~~~~l 370 (758)
T 3ott_A 300 -ISLSRYNSA---LQFIPISQITGTGDGNQFYSLFRDSKGF-YWFGGA---N-GLIRFTDPAGERHDAIWYRMGDKTYPL 370 (758)
T ss_dssp -EEEECCCC----CEEEEHHHHSCSCCCCBEEEEEECTTCC-EEEEET---T-EEEEESCTTSSCCCCEEECTTCSSSCC
T ss_pred -ccccccCCc---eeEEecccCCCCCCCceEEEEEEcCCCC-EEEeeC---C-cceeecccccccceeEEeccCCcCCCC
Confidence 544432211 111110 01234688888877774 443222 4 46667655432 111121
Q ss_pred cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee-c-----cccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 379 TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK-I-----HQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 379 ~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~-~-----~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
....|.++.-.++|+..+. + ++-|..||..+++...-.. . ....|.++...+++++.+ |+..+-|.+++
T Consensus 371 ~~~~v~~i~~d~~g~lWig---t-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~ 445 (758)
T 3ott_A 371 SHNRIRHIYEDKEQQLWIA---T-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVD 445 (758)
T ss_dssp SCSCEEEEEECTTSCEEEE---E-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEE
T ss_pred CCCceEEEEECCCCCEEEE---e-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEc
Confidence 1235888888888876654 3 4579999987765432111 1 124578888877776444 66555677887
Q ss_pred cC
Q psy8285 453 CF 454 (507)
Q Consensus 453 ~~ 454 (507)
..
T Consensus 446 ~~ 447 (758)
T 3ott_A 446 KH 447 (758)
T ss_dssp HH
T ss_pred cc
Confidence 54
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=92.45 E-value=5.1 Score=34.90 Aligned_cols=221 Identities=16% Similarity=0.130 Sum_probs=119.1
Q ss_pred eeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE
Q psy8285 168 TSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 168 i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~ 247 (507)
|..++-.....++.. ++.|+.|-.......-+... ....|..++.... ..++. . ||.|..|-......+..-
T Consensus 26 i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~---~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAA---TQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp CCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGG---GGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCcc---CCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 445665555666666 99999997654221111111 2335666665432 33333 4 888998875543221111
Q ss_pred eecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCC
Q psy8285 248 RTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKR 327 (507)
Q Consensus 248 ~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~ 327 (507)
..-...|..++......+.-. +|.|+.|-......... .......|..++...+...++ . |+.|+.|-......
T Consensus 98 ~~~~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~G~~~~~~l-~-~G~v~~wG~n~~gq-- 171 (282)
T 3qhy_B 98 AEARSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTV-PAEAQSGVTALDGGVYTALAV-K-NGGVIAWGDNYFGQ-- 171 (282)
T ss_dssp GGGSSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSEEEEE-E-TTEEEEEECCTTST--
T ss_pred cccCCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCC-CccCCCCeEEEEcccCEEEEE-E-CCEEEEecCCCCCC--
Confidence 112346888888666666667 99999998775432211 112234566666554433333 2 78899887654311
Q ss_pred CeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee-eeecCCCeEEEEECCCCCeEEEEeccCCCeE
Q psy8285 328 PQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC-HVKTDSQVTSILWSEQYRELVTSHGKQDCSL 406 (507)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i 406 (507)
+.........|..++.... +.++. . |+.++.|-....-.+- .......|..++-... ..++. . ||.|
T Consensus 172 -lg~p~~~~~~v~~i~~G~~--hs~al-~---~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~-h~~al---~-~g~v 239 (282)
T 3qhy_B 172 -TTVPAEAQSGVDDVAGGIF--HSLAL-K---DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW-YSLAL---K-NGKV 239 (282)
T ss_dssp -TSCCGGGGSSEEEEEECSS--EEEEE-E---TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS-CEEEE---E-TTEE
T ss_pred -CCCceecCCCeEEEEecCC--EEEEE-E---CCeEEEEECCCCCCCCCCcccCCCceEEEcCCC-EEEEE---E-CCEE
Confidence 1111112346777776543 34444 4 8999999754432211 1111234555554322 22333 3 8889
Q ss_pred EEEeCCCc
Q psy8285 407 KMWEYPRL 414 (507)
Q Consensus 407 ~v~d~~~~ 414 (507)
+.|-....
T Consensus 240 ~~wG~n~~ 247 (282)
T 3qhy_B 240 IAWGSSRT 247 (282)
T ss_dssp EEESTTCC
T ss_pred EEecCCCC
Confidence 99876543
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=92.22 E-value=7.8 Score=36.55 Aligned_cols=241 Identities=8% Similarity=0.021 Sum_probs=118.6
Q ss_pred CceEEEEEccCCC-eEEEEeCCCCcEEEEeCCCce---eEEEEe---------ecCccEEEEEeeC------CEEEEEec
Q psy8285 209 AYISCVAWKPRTT-DLAVTNTCTEYIDLWHEQEER---LIQKLR---------THMHQVIAMCWNG------NLLSCGTI 269 (507)
Q Consensus 209 ~~v~~~~~~~~~~-~l~~~~~~dg~i~iwd~~~~~---~~~~~~---------~~~~~v~~~~~~~------~~l~~~~~ 269 (507)
.....|+|.|++. .|+++ ...|.|++++..... .+..+. ........|+++. .+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~-er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFIL-EKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp SSEEEEECCSSSSCCEEEE-ETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCceEEEECCCCCeEEEEE-eCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 3468999999996 56666 688999999754321 222221 1145678899843 33333322
Q ss_pred C------------CeEEEEECCCC--C-----cCcee--ee--cCCCceEEEEEcCCCCEEEEEeC-Cc-----------
Q psy8285 270 G------------GNILHYDVRTH--S-----DYPTA--IT--REGDVVCGLKWSPNGRYLASGSN-NT----------- 314 (507)
Q Consensus 270 d------------g~i~i~d~~~~--~-----~~~~~--~~--~~~~~v~~~~~~~~~~~l~~~~d-~~----------- 314 (507)
+ ..|.-|.+... . ..... .. .....-..|+|.|||.+.++.+| +.
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~ 172 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGL 172 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCc
Confidence 1 14555666432 0 01111 11 11223578999999998887665 31
Q ss_pred ----EEEEEcCCCCC-------C------------CCeeeecCCCCCeeEEEEccCCC----c-EEEEEccCCC--CeEE
Q psy8285 315 ----VKIWDFRQLDA-------K------------RPQVNNQCHLSAVKAIAWCPWEP----T-LLATGGGICD--QTVR 364 (507)
Q Consensus 315 ----i~i~d~~~~~~-------~------------~~~~~~~~~~~~v~~~~~~~~~~----~-~~~~~~~~~d--~~i~ 364 (507)
=+|+.+..... . ....--.+|.+ ...++|+|... . .+..+....+ ..-.
T Consensus 173 ~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e 251 (463)
T 2wg3_C 173 SDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR 251 (463)
T ss_dssp CSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred CCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence 13443332210 0 01111223443 45789999732 2 2322210001 1123
Q ss_pred EEeCCCC------CeeeeeecC--CCeEEEEECCC-------CCeEEEEeccCCCeEEEEeCCCcc---EEEEe-ec---
Q psy8285 365 LWNSMNG------KEKCHVKTD--SQVTSILWSEQ-------YRELVTSHGKQDCSLKMWEYPRLH---LIEEL-KI--- 422 (507)
Q Consensus 365 i~d~~~~------~~~~~~~~~--~~i~~~~~s~~-------~~~l~~~~g~~d~~i~v~d~~~~~---~~~~~-~~--- 422 (507)
|..+..+ .++..+..+ ..+..+.|-.. +.+++. ...+.|....+.... ....+ .+
T Consensus 252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~---~~~g~i~~~~~~~~~~~~~~~~~~~g~~~ 328 (463)
T 2wg3_C 252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFG---DRNGNFLTLQQSPVTKQWQEKPLCLGTSG 328 (463)
T ss_dssp EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEE---ETTSCEEEEEC-----CCEEEEECEEETT
T ss_pred EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEe---cCCCcEEEEEeCCCCceeeEEEeecCCcc
Confidence 3333322 244455444 35677777432 345554 233666666654321 11112 11
Q ss_pred -----cccceeEEEECCCCCEEEEEeCC-----CcEEEEecC
Q psy8285 423 -----HQERILSAVLSPDQTCVAAASAD-----ETISIWNCF 454 (507)
Q Consensus 423 -----~~~~i~~~~~s~~~~~l~s~~~d-----g~i~iw~~~ 454 (507)
...++.++...|||.++++.... ..=+||.+.
T Consensus 329 ~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~ 370 (463)
T 2wg3_C 329 SCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV 370 (463)
T ss_dssp SSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred cccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence 23578999999999987776521 233677775
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=87.60 E-value=13 Score=34.97 Aligned_cols=107 Identities=9% Similarity=0.035 Sum_probs=61.5
Q ss_pred CCeeEEEEccCCC-cEEEEEccCCCCeEEEEeCCCCC---eeeeee-----c-----CCCeEEEEECCC---CCeEEEEe
Q psy8285 337 SAVKAIAWCPWEP-TLLATGGGICDQTVRLWNSMNGK---EKCHVK-----T-----DSQVTSILWSEQ---YRELVTSH 399 (507)
Q Consensus 337 ~~v~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~---~~~~~~-----~-----~~~i~~~~~s~~---~~~l~~~~ 399 (507)
...+.|+|.|++. +++++.. .|.|++++..... .+..+. . ......++++|+ ..+|+++.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er---~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y 90 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEK---EGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY 90 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEET---TTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEeC---CceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence 3567999999985 5777665 8999999754321 222111 1 246789999997 33443321
Q ss_pred cc-CC----------CeEEEEeCCC----------ccEEEEee--ccccceeEEEECCCCCEEEEEeCCC
Q psy8285 400 GK-QD----------CSLKMWEYPR----------LHLIEELK--IHQERILSAVLSPDQTCVAAASADE 446 (507)
Q Consensus 400 g~-~d----------~~i~v~d~~~----------~~~~~~~~--~~~~~i~~~~~s~~~~~l~s~~~dg 446 (507)
.. .+ ..|.-|.+.. .+.+..+. .....-..|+|.|||.+.++.++.+
T Consensus 91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 11 11 1444465532 12333332 1122357899999998777766543
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.28 E-value=20 Score=32.83 Aligned_cols=268 Identities=12% Similarity=0.118 Sum_probs=121.4
Q ss_pred EEEEEcCCeEEEEECCC-Cc-------eeEE-EecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-------
Q psy8285 178 TLAVALDTSVYTWNTKT-NK-------TQLL-VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE------- 241 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~-~~-------~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~------- 241 (507)
+++...||.|+.|-... ++ .... ..........+..++-. ....++. ..||.|..|-....
T Consensus 13 ~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~~~~l-~~~G~v~~wG~n~~GqLG~g~ 89 (389)
T 3kci_A 13 NLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGG--EQTLFAV-TADGKLYATGYGAGGRLGIGG 89 (389)
T ss_dssp --------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEE--TTEEEEE-ETTSCEEEEECCGGGTTSSSS
T ss_pred ceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeC--CCeEEEE-cCCCcEEEEECCCCCCCCCCC
Confidence 66677889999996543 21 1111 11100011234455432 3344444 58999999964321
Q ss_pred -e---eEEEEee-cCccEE--EEEeeCCEEEEEecCCeEEEEECCCCCcC----------ceeeec-CCCceEEEEEcCC
Q psy8285 242 -R---LIQKLRT-HMHQVI--AMCWNGNLLSCGTIGGNILHYDVRTHSDY----------PTAITR-EGDVVCGLKWSPN 303 (507)
Q Consensus 242 -~---~~~~~~~-~~~~v~--~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~~-~~~~v~~~~~~~~ 303 (507)
+ ....+.. ....+. .++......+.-..+|.|+.|-....... ...+.. ....|..++....
T Consensus 90 ~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~ 169 (389)
T 3kci_A 90 TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGA 169 (389)
T ss_dssp SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS
T ss_pred cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcC
Confidence 1 1111211 122233 33335667777788999999976532110 111111 1224555554322
Q ss_pred CCEEEEEeCCcEEEEEcCCCC------CCC---CeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC-C-
Q psy8285 304 GRYLASGSNNTVKIWDFRQLD------AKR---PQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG-K- 372 (507)
Q Consensus 304 ~~~l~~~~d~~i~i~d~~~~~------~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~- 372 (507)
..++...+|.|+.|-..... ... +..........|..++......+.++... |+.|+.|-.... +
T Consensus 170 -hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~---~G~v~~wG~n~~GqL 245 (389)
T 3kci_A 170 -HSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTD---DDTVWSWGDGDYGKL 245 (389)
T ss_dssp -EEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEET---TTEEEEEECCGGGTT
T ss_pred -eEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEcc---CCEEEEEeCCCCCCC
Confidence 22333346888888654310 000 00111112235666665432235555554 899999964321 1
Q ss_pred ---------eeeeeec--CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc-----------EEEEeec-cccceeE
Q psy8285 373 ---------EKCHVKT--DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH-----------LIEELKI-HQERILS 429 (507)
Q Consensus 373 ---------~~~~~~~--~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~-----------~~~~~~~-~~~~i~~ 429 (507)
....+.. ...+..++.-.. +.++ -..+|.|+.|-....- ....+.. ....|..
T Consensus 246 G~g~~~~~~~p~~v~~~~~~~v~~v~~G~~--hs~a--lt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ 321 (389)
T 3kci_A 246 GRGGSDGCKVPMKIDSLTGLGVVKVECGSQ--FSVA--LTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIA 321 (389)
T ss_dssp SSSSCCCEEEEEECGGGTTSCEEEEEEETT--EEEE--EETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEE
T ss_pred CCCCCCCccccEEecccCCCcEEEEeCCCC--EEEE--EeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEE
Confidence 0111111 123555554332 2233 2468899999653210 1111111 1234666
Q ss_pred EEECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 430 AVLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 430 ~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
++.. ....+....||.|+.|=....-+
T Consensus 322 ia~G--~~h~~al~~~G~v~~wG~n~~Gq 348 (389)
T 3kci_A 322 IATG--SLHCVCCTEDGEVYTWGDNDEGQ 348 (389)
T ss_dssp EEEC--SSEEEEEETTCCEEEEECCTTST
T ss_pred EEec--cCeEEEECCCCCEEEeeCCCCCc
Confidence 6553 33455567899999998765433
|
| >1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 | Back alignment and structure |
|---|
Probab=81.13 E-value=28 Score=30.64 Aligned_cols=189 Identities=13% Similarity=0.026 Sum_probs=103.7
Q ss_pred eCCEEEEEecCCeEEEEECCCCCcCce--------eeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCC-----
Q psy8285 260 NGNLLSCGTIGGNILHYDVRTHSDYPT--------AITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDA----- 325 (507)
Q Consensus 260 ~~~~l~~~~~dg~i~i~d~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~----- 325 (507)
+..++++.+.+|.|+-..+........ .+.. .+.+..+........++..+ .|.++-+....-..
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 456788999999999887654321110 1122 23344444443444455555 58877766542100
Q ss_pred -CCC---eeeecCCCCCeeEEEEcc---CCCcEEEEEccCCCCeEEEEeCCC-------CCeeeeeecCCCeEEEEECCC
Q psy8285 326 -KRP---QVNNQCHLSAVKAIAWCP---WEPTLLATGGGICDQTVRLWNSMN-------GKEKCHVKTDSQVTSILWSEQ 391 (507)
Q Consensus 326 -~~~---~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~i~~~~~s~~ 391 (507)
..+ ...+. ....|..+...+ ++.+++.... .|.++...+.. |.....+.....+..+....+
T Consensus 86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~---~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~ 161 (312)
T 1suu_A 86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTA---SGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFK 161 (312)
T ss_dssp --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEET---TSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECT
T ss_pred CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeC---CCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCC
Confidence 011 11122 233455554332 3445666655 88888877632 222223334456666665555
Q ss_pred CCeEEEEeccCCCeEEEEeCCC---------ccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 392 YRELVTSHGKQDCSLKMWEYPR---------LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 392 ~~~l~~~~g~~d~~i~v~d~~~---------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
+..++. .+.+|.+..+.... |.....+.. ...|..+..-.++..+++.+..|..+..++..-
T Consensus 162 ~~~i~l--~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 162 DEKVIC--LSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp TCEEEE--EETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred CCEEEE--EeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 556666 56789888887643 122222332 345566655555667888999999999988653
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.26 E-value=35 Score=31.15 Aligned_cols=233 Identities=15% Similarity=0.163 Sum_probs=119.3
Q ss_pred eeeeCCCCEEEEEcCCeEEEEECCCC-c--------eeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC
Q psy8285 170 GLDWGYHDTLAVALDTSVYTWNTKTN-K--------TQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 170 ~~~~s~~~~~~~~~~~~i~iw~~~~~-~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
.++-.....++...+|.|+.|-.... + ......++......+..++.+......++. ..+|.|+.|-...
T Consensus 57 ~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al-~~~G~v~~wG~n~ 135 (389)
T 3kci_A 57 QLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLAL-SSEGEVYSWGEAE 135 (389)
T ss_dssp EEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEE-ETTSCEEEEECCG
T ss_pred EEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEE-cCCCCEEEEeCCC
Confidence 34444455778889999999964331 1 111111111023345556666656666666 7899999995432
Q ss_pred c-----------eeEEEEee-cCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcC----------ceeee-cCCCceEE
Q psy8285 241 E-----------RLIQKLRT-HMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDY----------PTAIT-REGDVVCG 297 (507)
Q Consensus 241 ~-----------~~~~~~~~-~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------~~~~~-~~~~~v~~ 297 (507)
. .....+.. ....|..++......++...+|.|+.|-....... ..... .....|..
T Consensus 136 ~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ 215 (389)
T 3kci_A 136 DGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVD 215 (389)
T ss_dssp GGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEE
T ss_pred CCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEE
Confidence 1 11112222 22367888887777778888999999976542110 01111 12234666
Q ss_pred EEEcCCCCE-EEEEeCCcEEEEEcCCCCCC-----CC---eeeecC-CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEe
Q psy8285 298 LKWSPNGRY-LASGSNNTVKIWDFRQLDAK-----RP---QVNNQC-HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWN 367 (507)
Q Consensus 298 ~~~~~~~~~-l~~~~d~~i~i~d~~~~~~~-----~~---~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d 367 (507)
++......+ ++...++.|+.|-....... .. ...+.. ....|..++.... +.++... ++.|+.|=
T Consensus 216 ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~--hs~alt~---~G~v~~wG 290 (389)
T 3kci_A 216 IACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ--FSVALTK---SGAVYTWG 290 (389)
T ss_dssp EEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT--EEEEEET---TSCEEEEE
T ss_pred EEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC--EEEEEeC---CCeEEEEe
Confidence 665432233 44444699999865431000 00 011111 1224666665432 3444444 89999996
Q ss_pred CCCCCe-----------eeeeec--CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCC
Q psy8285 368 SMNGKE-----------KCHVKT--DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 368 ~~~~~~-----------~~~~~~--~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
....-. ...+.. ...|..++.-. .+.++ -..||.|+.|-..
T Consensus 291 ~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~--~h~~a--l~~~G~v~~wG~n 344 (389)
T 3kci_A 291 KGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS--LHCVC--CTEDGEVYTWGDN 344 (389)
T ss_dssp CCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEE--EETTCCEEEEECC
T ss_pred CCCCCCCCCCCCccccCCeEeccCCCCCEEEEEecc--CeEEE--ECCCCCEEEeeCC
Confidence 532110 111111 12455555432 22333 2468888888754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 507 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-18 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.002 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-18 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-12 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-11 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.001 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.002 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 5e-11 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.001 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.003 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-10 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.003 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 7e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.002 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 3e-07 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 8e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 8e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 9e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 1e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 5e-06 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 6e-06 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 82.9 bits (203), Expect = 4e-18
Identities = 48/287 (16%), Positives = 105/287 (36%), Gaps = 27/287 (9%)
Query: 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243
D ++ W+ +T + ++ + + T + + E
Sbjct: 38 DATIKVWDYETGD--FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR 95
Query: 244 IQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN 303
H +++ NG+ + + I ++V+T T T + V ++ + +
Sbjct: 96 TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKT-FTGHREWVRMVRPNQD 154
Query: 304 GRYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGG------ 356
G +AS SN TV++W K + + H V+ I+W P +
Sbjct: 155 GTLIASCSNDQTVRVWVVAT---KECKAELREHRHVVECISWAPESSYSSISEATGSETK 211
Query: 357 -----------GICDQTVRLWNSMNGKEKCHVKT-DSQVTSILWSEQYRELVTSHGKQDC 404
G D+T+++W+ G + D+ V +L+ + +++ D
Sbjct: 212 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILS--CADDK 269
Query: 405 SLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIW 451
+L++W+Y ++ L H+ + S V S D+T+ +W
Sbjct: 270 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 69.8 bits (169), Expect = 1e-13
Identities = 37/323 (11%), Positives = 93/323 (28%), Gaps = 29/323 (8%)
Query: 5 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRE 64
H S V + + P ++ + D T+++W+ G + +K
Sbjct: 16 HRSPVTRVIFHPVFS-VMVSASE--DATIKVWDYETGDFERTLK---------------- 56
Query: 65 SSRSKMVNTDRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKK 124
+ V + S + ++ + + + +
Sbjct: 57 -GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 115
Query: 125 VLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALD 184
+++ S+ ++T + + + P+ S + VA
Sbjct: 116 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 175
Query: 185 TSVYTWNTKTNKTQLLVEYPTYDNAYIS-----CVAWKPRTTDLAVTNTCTEYIDLWHEQ 239
+ + + P + IS + ++ + + I +W
Sbjct: 176 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 235
Query: 240 EERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCG 297
+ L H + V + + G + + +D + T + V
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT-LNAHEHFVTS 294
Query: 298 LKWSPNGRYLASGS-NNTVKIWD 319
L + Y+ +GS + TVK+W+
Sbjct: 295 LDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 54.0 bits (128), Expect = 2e-08
Identities = 29/162 (17%), Positives = 61/162 (37%), Gaps = 8/162 (4%)
Query: 293 DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTL 351
V + + P + S S + T+K+WD + + + H +V+ I++
Sbjct: 18 SPVTRVIFHPVFSVMVSASEDATIKVWD---YETGDFERTLKGHTDSVQDISFDHSGKL- 73
Query: 352 LATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEY 411
+ D V+S+ +V++ D ++KMWE
Sbjct: 74 -LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR--DKTIKMWEV 130
Query: 412 PRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNC 453
+ ++ H+E + + D T +A+ S D+T+ +W
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.8 bits (86), Expect = 0.002
Identities = 35/244 (14%), Positives = 73/244 (29%), Gaps = 30/244 (12%)
Query: 211 ISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW-NGNLLSCGTI 269
++ V + P + V+ + I +W + + L+ H V + + + L
Sbjct: 20 VTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 78
Query: 270 GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQ 329
+ + + V + PNG ++ S S + K ++
Sbjct: 79 ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD--KTIKMWEVQTGYCV 136
Query: 330 VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWS 389
H V+ + + TL+A+ DQTVR+W + K ++
Sbjct: 137 KTFTGHREWVRMVRPNQ-DGTLIASCSN--DQTVRVWVVATKECKAELR----------- 182
Query: 390 EQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETIS 449
H + I + + + S D+TI
Sbjct: 183 --------EHRHVVECISWAPESSYSSI----SEATGSETKKSGKPGPFLLSGSRDKTIK 230
Query: 450 IWNC 453
+W+
Sbjct: 231 MWDV 234
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 82.9 bits (203), Expect = 5e-18
Identities = 45/273 (16%), Positives = 88/273 (32%), Gaps = 12/273 (4%)
Query: 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243
D + W++ T + + ++ A+ P +A + E
Sbjct: 76 DGKLIIWDSYTTNKVHAIPLRSS---WVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN 132
Query: 244 IQKLRTH----MHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLK 299
++ R + + N + + +D+ T T GDV+
Sbjct: 133 VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSL 192
Query: 300 WSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC 359
+++ + + K+WD R+ + H S + AI + P
Sbjct: 193 APDTRLFVSGACDASAKLWDVRE---GMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 360 DQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEE 419
+ L H +TS+ +S+ R L+ G D + +W+ +
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA--GYDDFNCNVWDALKADRAGV 307
Query: 420 LKIHQERILSAVLSPDQTCVAAASADETISIWN 452
L H R+ ++ D VA S D + IWN
Sbjct: 308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.1 bits (136), Expect = 1e-09
Identities = 48/228 (21%), Positives = 79/228 (34%), Gaps = 6/228 (2%)
Query: 230 TEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTA 287
T ID + R + LR H+ ++ AM W + LL + G ++ +D T + A
Sbjct: 34 TNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT-NKVHA 92
Query: 288 ITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW 347
I V ++P+G Y+A G + I L + V L+ C
Sbjct: 93 IPLRSSWVMTCAYAPSGNYVACGGLD--NICSIYNLKTREGNVRVSRELAGHTGYLSCCR 150
Query: 348 EPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLK 407
D T LW+ G++ + L L S G D S K
Sbjct: 151 FLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS-GACDASAK 209
Query: 408 MWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFP 455
+W+ + H+ I + P+ A S D T +++
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 80.6 bits (197), Expect = 5e-17
Identities = 45/313 (14%), Positives = 96/313 (30%), Gaps = 44/313 (14%)
Query: 179 LAVALDTSVYTWNTKTNKTQLLVEYPTYDN---------------AYISCVAWKPRTTDL 223
LA + + + + + N YI V + P L
Sbjct: 77 LATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136
Query: 224 AVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSD 283
A E + ++ + G +
Sbjct: 137 ATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ 196
Query: 284 YPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKR----PQVNNQCHLSA 338
++ E V +G+Y+A+GS + V++WD + H +
Sbjct: 197 CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS 256
Query: 339 VKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK-------------CHVKTDSQVTS 385
V ++ + ++++ D++V+LWN N K ++ V S
Sbjct: 257 VYSVVFTRDGQSVVSGSL---DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313
Query: 386 ILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILS------AVLSPDQTCV 439
+ ++ +++ G +D + W+ + + L+ H+ ++S + L P+
Sbjct: 314 VATTQNDEYILS--GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371
Query: 440 AAASADETISIWN 452
A S D IW
Sbjct: 372 ATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.0 bits (133), Expect = 5e-09
Identities = 43/344 (12%), Positives = 97/344 (28%), Gaps = 41/344 (11%)
Query: 5 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQ-VTSILWSEQYR 63
H S V + + + LATG C++T +++ +G + DS
Sbjct: 61 HTSVVCCVKFSN-DGEYLATG---CNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSS 116
Query: 64 ESSRSKMVNTDRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRK 123
S + + + D + L++ + E + +
Sbjct: 117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD 176
Query: 124 KVLN-QSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVA 182
K+++ RTV L ++ + +P LD + V
Sbjct: 177 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDR----AVRVW 232
Query: 183 LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAV-----------TNTCTE 231
+ + ++ + T + V + +
Sbjct: 233 DSETGFLVERLDSENESG----TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288
Query: 232 YIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRT--------- 280
D H V+++ N + G+ +L +D ++
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG 348
Query: 281 HSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQL 323
H + ++ V G P A+GS + +IW ++++
Sbjct: 349 HRNSVISV----AVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 9e-09
Identities = 30/176 (17%), Positives = 58/176 (32%), Gaps = 19/176 (10%)
Query: 293 DVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKR---------------PQVNNQCHLS 337
VVC +K+S +G YLA+G N T +++ ++
Sbjct: 63 SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122
Query: 338 AVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVT 397
++++ + P LATG + + + + +
Sbjct: 123 YIRSVCFSPDG-KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK---L 178
Query: 398 SHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNC 453
G D ++++W+ L I AV D +AA S D + +W+
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDS 234
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.3 bits (126), Expect = 4e-08
Identities = 48/282 (17%), Positives = 101/282 (35%), Gaps = 37/282 (13%)
Query: 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI----QKLRTHMHQVIAMCW--NGN 262
+ ++ A+ +Y L++ R I K H V + + +G
Sbjct: 16 IPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE 75
Query: 263 LLSCGTIGGNILHYDVRTHS-----------------DYPTAITREGDVVCGLKWSPNGR 305
L+ G Y V S ++ + + +SP+G+
Sbjct: 76 YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 134
Query: 306 YLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRL 365
+LA+G+ + + + + I + P+ G D+TVR+
Sbjct: 135 FLATGAEDRLIRIWDIENRKIVMILQGHEQ-----DIYSLDYFPSGDKLVSGSGDRTVRI 189
Query: 366 WNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI--- 422
W+ G+ + + VT++ S + + + G D ++++W+ L+E L
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA-GSLDRAVRVWDSETGFLVERLDSENE 248
Query: 423 ----HQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKR 460
H++ + S V + D V + S D ++ +WN + K
Sbjct: 249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.8 bits (161), Expect = 1e-12
Identities = 39/260 (15%), Positives = 92/260 (35%), Gaps = 21/260 (8%)
Query: 203 YPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGN 262
+ S V V+ + + +W + + + L H+ V + ++G
Sbjct: 89 CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGR 148
Query: 263 LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR 321
+ G + +D T + T +G +G ++ SGS + ++++WD
Sbjct: 149 RVVSGAYDFMVKVWDPETET---CLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 205
Query: 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS 381
+ +Q S ++ + +L +G D TV++W+ G+ ++ +
Sbjct: 206 TGNCIHTLTGHQSLTSGME------LKDNILVSG--NADSTVKIWDIKTGQCLQTLQGPN 257
Query: 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI-----HQERILSAVLSPDQ 436
+ S + Q+ + D ++K+W+ I L + S +
Sbjct: 258 KHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK 317
Query: 437 TCVAAASADET----ISIWN 452
A S + T + + +
Sbjct: 318 LVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.4 bits (142), Expect = 3e-10
Identities = 54/331 (16%), Positives = 98/331 (29%), Gaps = 22/331 (6%)
Query: 5 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT-DSQVTSILWSEQYR 63
H V I + + +G D T+++W+++ GK + V S +
Sbjct: 15 HDDHV--ITCLQFCGNRIVSGSD--DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNII 70
Query: 64 ESSRSKMVNTDRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRK 123
S + +L H + R +
Sbjct: 71 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL 130
Query: 124 KVLNQSKRTVSPTQFLRT---LGKLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLA 180
VL V Q+ G VK + +
Sbjct: 131 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHV 190
Query: 181 VA--LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238
V+ LDTS+ W+ +T + T + S + K ++ + D+
Sbjct: 191 VSGSLDTSIRVWDVETGN---CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTG 247
Query: 239 QEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITRE----GDV 294
Q + +Q H V + +N N + + G + +D++T +T E G V
Sbjct: 248 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307
Query: 295 VCGLKWSPNGRYLASGSNN-----TVKIWDF 320
V ++ S A GS N + + DF
Sbjct: 308 VWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 1e-05
Identities = 38/219 (17%), Positives = 74/219 (33%), Gaps = 16/219 (7%)
Query: 236 WHEQEERLIQKLRTHMHQVI-AMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDV 294
W E + + L+ H VI + + GN + G+ + + T T +
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT-LVGHTGG 59
Query: 295 VCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLAT 354
V + N S +T + + H S V+ +
Sbjct: 60 VWSSQMRDNIII----SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV---- 111
Query: 355 GGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRL 414
G D T+R+W+ G+ + + + R + ++ D +K+W+
Sbjct: 112 -SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY---DFMVKVWDPETE 167
Query: 415 HLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNC 453
+ L+ H R+ L D V + S D +I +W+
Sbjct: 168 TCLHTLQGHTNRV--YSLQFDGIHVVSGSLDTSIRVWDV 204
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.6 bits (158), Expect = 3e-12
Identities = 45/280 (16%), Positives = 89/280 (31%), Gaps = 15/280 (5%)
Query: 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDN--AYISCVAWKPRTTDLAV---TNTCTEY 232
+ V W+ + V N YI P L V +T + +
Sbjct: 65 HVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW 124
Query: 233 IDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREG 292
+ +A+ + + GNI +D+ +
Sbjct: 125 DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 184
Query: 293 DVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLL 352
C + + G +NTV+ WD R+ Q+ S + ++ +CP L
Sbjct: 185 GASCIDISNDGTKLWTGGLDNTVRSWDLRE----GRQLQQHDFTSQIFSLGYCPTGEWLA 240
Query: 353 ATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYP 412
+ + + + H +S V S+ ++ + V++ +D L W P
Sbjct: 241 VGMESSNVEVLHVNKPDKYQLHLH---ESCVLSLKFAYCGKWFVSTG--KDNLLNAWRTP 295
Query: 413 RLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
I + K +LS +S D + S D+ +++
Sbjct: 296 YGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (133), Expect = 3e-09
Identities = 28/322 (8%), Positives = 69/322 (21%), Gaps = 44/322 (13%)
Query: 5 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT------DSQVTSILW 58
H V A+ + TGG V++W+ + K V D+ + S
Sbjct: 50 HGEVVCAVTISN-PTRHVYTGG---KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL 105
Query: 59 SEQYRESSRSKMVNTDRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGF 118
+T + + + ++ K
Sbjct: 106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI 165
Query: 119 EIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDT 178
+ +
Sbjct: 166 AVWDLHNQTL-------------------------------VRQFQGHTDGASCIDISND 194
Query: 179 LAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238
+ + + + I + + P LAV + L
Sbjct: 195 GTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254
Query: 239 QEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGL 298
+ ++ L + + G + + + ++E V
Sbjct: 255 KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA--SIFQSKESSSVLSC 312
Query: 299 KWSPNGRYLASGS-NNTVKIWD 319
S + +Y+ +GS + +++
Sbjct: 313 DISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (133), Expect = 4e-09
Identities = 32/184 (17%), Positives = 69/184 (37%), Gaps = 4/184 (2%)
Query: 292 GDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRP--QVNNQCHLSAVKAIAWCPWEP 349
G+VVC + S R++ +G VK+WD K P Q++ + +++ P +
Sbjct: 51 GEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DG 109
Query: 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409
L GG ++ + + K + + + + V D ++ +W
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYA-LAISPDSKVCFSCCSDGNIAVW 168
Query: 410 EYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGS 469
+ L+ + + H + +S D T + D T+ W+ + ++
Sbjct: 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF 228
Query: 470 SLEF 473
SL +
Sbjct: 229 SLGY 232
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (98), Expect = 7e-05
Identities = 29/273 (10%), Positives = 68/273 (24%), Gaps = 16/273 (5%)
Query: 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLW-----HEQEERLIQKLRTHMHQVIAMCW--N 260
+ V T + + +W + + + + +
Sbjct: 51 GEVVCAVTISNPTRHVYTG--GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 261 GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDF 320
G L G + +D+ + A C + + I +
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168
Query: 321 RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380
+ + A D TVR W+ G++
Sbjct: 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG----LDNTVRSWDLREGRQLQQHDFT 224
Query: 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVA 440
SQ+ S+ + + S + +L +H+ +LS +
Sbjct: 225 SQIFSLGYCPTGE---WLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFV 281
Query: 441 AASADETISIWNCFPRDKKRKARQVGSGSSLEF 473
+ D ++ W ++++ S S +
Sbjct: 282 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDI 314
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.6 bits (150), Expect = 3e-11
Identities = 42/351 (11%), Positives = 103/351 (29%), Gaps = 22/351 (6%)
Query: 17 WEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT-DSQVTSILWSEQYRESSRSKMVNTDR 75
+E + TG D+ +R+++S+N K + D V ++ ++ S S
Sbjct: 21 FEDNYVITGAD--DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV 78
Query: 76 YVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSP 135
+ + + + + ++ T+ + + +++ +++ G + V K + P
Sbjct: 79 WDIKK------GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 132
Query: 136 TQFLRTLGKLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTN 195
L + + + G D ++ W+
Sbjct: 133 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY-DNTLIVWDVAQM 191
Query: 196 KTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVI 255
K ++ T + R ++ T + E L +
Sbjct: 192 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 251
Query: 256 AMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTV 315
+ + + + G+ + ++ + + L SGS N
Sbjct: 252 SDKFLVSAAADGS------IRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQF 305
Query: 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLW 366
I++ R K N + ++ + TL+A D L
Sbjct: 306 NIYNLR--SGKLVHANILKDADQIWSVNFKG--KTLVAAVEK--DGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.2 bits (97), Expect = 1e-04
Identities = 37/304 (12%), Positives = 87/304 (28%), Gaps = 13/304 (4%)
Query: 149 VKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDN 208
+K IL + S + G + +++V + K + + DN
Sbjct: 59 LKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118
Query: 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGT 268
K + + E+ + LR HM V + +GN++ G+
Sbjct: 119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 178
Query: 269 IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRP 328
++ +DV + + R +++ + T++IWD +
Sbjct: 179 YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT 238
Query: 329 QVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILW 388
+ + ++ N + + +++I
Sbjct: 239 LQGHTALVGLLRLSDKFLVSA---------AADGSIRGWDANDYSRKFSYHHTNLSAITT 289
Query: 389 SEQYRELVTSHGKQDCSLKMWEYPRLHLI-EELKIHQERILSAVLSPDQTCVAAASADET 447
++ S + ++ L+ + ++I S T VAA D
Sbjct: 290 FYVSDNILVSGS--ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQ 346
Query: 448 ISIW 451
+
Sbjct: 347 SFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.001
Identities = 23/147 (15%), Positives = 41/147 (27%), Gaps = 6/147 (4%)
Query: 247 LRTHMHQVI-AMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR 305
LR HM VI + + N + G I YD + ++ V LK++ G
Sbjct: 8 LRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKK-FLLQLSGHDGGVWALKYAHGG- 65
Query: 306 YLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRL 365
L SGS + + I ++ D T+ +
Sbjct: 66 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS---RDNTLHV 122
Query: 366 WNSMNGKEKCHVKTDSQVTSILWSEQY 392
W + + + +
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPEE 149
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (86), Expect = 0.002
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 347 WEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT-DSQVTSILWSEQYRELVTSHGKQDCS 405
+E + TG D+ +R+++S+N K + D V ++ ++ LV+ +
Sbjct: 21 FEDNYVITGAD--DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVR 77
Query: 406 LKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNC 453
+ + + E R L V + + S D T+ +W
Sbjct: 78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 125
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 61.8 bits (148), Expect = 5e-11
Identities = 27/283 (9%), Positives = 63/283 (22%), Gaps = 19/283 (6%)
Query: 184 DTSVYTWNTKTNKTQLLVEYPTYDNAY-----ISCVAWKPRTTDLAVTNTCTEYIDLWHE 238
+ ++ +T K + E A ++ + T +
Sbjct: 65 GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124
Query: 239 QEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGL 298
E +I + + A T E
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 184
Query: 299 KWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNN----QCHLSAVKAIAWCPWEPTLLA 353
+ + + L S + D L+ V+ + P
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP-RSMTSE 243
Query: 354 TGGGICDQTVRLWNSMN---GKEKCHVKTDSQVTSILWSEQYRELVTSH-GKQDCSLKMW 409
G + + + +N G + + +S + + L +
Sbjct: 244 AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY 303
Query: 410 EYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
+ ++ + + LS D+ V D I +
Sbjct: 304 DVKT----RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFP 342
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 40.2 bits (92), Expect = 4e-04
Identities = 13/117 (11%), Positives = 36/117 (30%), Gaps = 7/117 (5%)
Query: 300 WSP-NGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGI 358
+SP +G +A S I D + ++ + + + G
Sbjct: 10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP-----EPLRIRYVRRGG-DTKVAFIHGTR 63
Query: 359 CDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415
+ +++ GK + + V ++ + V ++ + + E +
Sbjct: 64 EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPT 120
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 38.3 bits (87), Expect = 0.001
Identities = 11/166 (6%), Positives = 34/166 (20%), Gaps = 4/166 (2%)
Query: 291 EGDVVCGLKWSPNGRYLASGSN---NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW 347
E + ++ + + + + I+D+R A++ + N +
Sbjct: 41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFA 100
Query: 348 EPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLK 407
D + + + + + + L
Sbjct: 101 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160
Query: 408 MWEYPRLHLIEELKI-HQERILSAVLSPDQTCVAAASADETISIWN 452
+ Y + D + S +
Sbjct: 161 IHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD 206
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 37.5 bits (85), Expect = 0.003
Identities = 12/231 (5%), Positives = 46/231 (19%), Gaps = 27/231 (11%)
Query: 164 NDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISC-----VAWKP 218
N + + H + +++ ++ + K ++D A + +
Sbjct: 138 NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLS 197
Query: 219 RTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--------GNLLSCGTIG 270
+ + + + G
Sbjct: 198 YRSLDPSPDRVVLNFSFEVVSK---PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYK 254
Query: 271 GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQ 329
+ + + Y + +D +
Sbjct: 255 RSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-- 312
Query: 330 VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380
+ + + + + D + + +++ V+TD
Sbjct: 313 -----VKNNLTDLRLSA-DRKTVMVRKD--DGKIYTFPLEKPEDERTVETD 355
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.7 bits (140), Expect = 5e-10
Identities = 7/85 (8%), Positives = 23/85 (27%), Gaps = 1/85 (1%)
Query: 293 DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTL 351
D + +K P+ L S + ++ ++ F + + + + +
Sbjct: 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQ 71
Query: 352 LATGGGICDQTVRLWNSMNGKEKCH 376
+ G + +
Sbjct: 72 IYVGTVQGEILKVDLIGSPSFQALT 96
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.5 bits (124), Expect = 5e-08
Identities = 37/316 (11%), Positives = 84/316 (26%), Gaps = 31/316 (9%)
Query: 176 HDTLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYID 234
L + D S+ + + + + C + T T I
Sbjct: 23 KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82
Query: 235 LWHEQE---ERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITRE 291
+ + ++ + + L + G I D R + D A+
Sbjct: 83 KVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL 142
Query: 292 GDVVCG------LKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWC 345
+ + R + +N+ V+ + + + ++ +A
Sbjct: 143 NSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL 202
Query: 346 PWEPTLLATGGGICDQTVRLWNSMNGKEKC----------------HVKTDSQVTSILWS 389
P E A D V + + + V SI +S
Sbjct: 203 PKEQEGYACSS--IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS 260
Query: 390 EQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETIS 449
+++ L T+ D + W I+ E ++ + A++D+T
Sbjct: 261 PRHKFLYTAGS--DGIISCWNLQTRKKIKNFAKFNE-DSVVKIACSDNILCLATSDDTFK 317
Query: 450 IWNCFPRDKKRKARQV 465
+ + A +
Sbjct: 318 TNAAIDQTIELNASSI 333
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 2e-06
Identities = 32/321 (9%), Positives = 87/321 (27%), Gaps = 10/321 (3%)
Query: 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQ 61
Q + I P +LL D ++ ++ + + + L
Sbjct: 7 EQAPKDYISDIKIIP-SKSLLLITSW--DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 62 YRESSRSKMVNTDRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEID 121
+ +++ ++ + N+ + K + ++
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123
Query: 122 RKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAV 181
+ + ++ ++ L KVK K + S + + + L
Sbjct: 124 IEVIDPRNYGD--GVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181
Query: 182 ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE 241
+ ++ K + + + S + + + +
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241
Query: 242 RLIQKLRTHMHQVIAMCWNGN--LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLK 299
RL K + V ++ ++ L G I ++++T D V K
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV--K 299
Query: 300 WSPNGRYLASGS-NNTVKIWD 319
+ + L + ++T K
Sbjct: 300 IACSDNILCLATSDDTFKTNA 320
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (103), Expect = 2e-05
Identities = 31/281 (11%), Positives = 73/281 (25%), Gaps = 33/281 (11%)
Query: 171 LDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT 230
++ + L + + T + T + A + D + +
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121
Query: 231 EYIDLWHEQEERLIQKLR--------THMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHS 282
I++ + +++ M N + L G + + +
Sbjct: 122 GLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCE 181
Query: 283 DYPTAITREGDV---VCGLKWSPNGRYLASGS-NNTVKIWDF------------RQLDAK 326
D I G A S + V + F
Sbjct: 182 DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241
Query: 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSI 386
R + + V +I + P L G D + WN K+ + ++ + +
Sbjct: 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAG---SDGIISCWNLQTRKKIKNFAKFNEDSVV 298
Query: 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERI 427
+ L + D + K + + ++++ I
Sbjct: 299 KIACSDNILCLATS--DDTFKTNAA----IDQTIELNASSI 333
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (134), Expect = 2e-09
Identities = 48/279 (17%), Positives = 106/279 (37%), Gaps = 29/279 (10%)
Query: 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243
D ++ W+ T + + ++ T V + +T + + +W +
Sbjct: 34 DNTIKIWDKNTLECKRILTGHT------GSVLCLQYDERVIITGSSDSTVRVWDVNTGEM 87
Query: 244 IQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN 303
+ L H V+ + +N ++ + +I +D+ + +D G +
Sbjct: 88 LNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD 147
Query: 304 GRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQT 362
+Y+ S S + T+K+W+ + R ++ IA + L+ +G D T
Sbjct: 148 DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG------IACLQYRDRLVVSG--SSDNT 199
Query: 363 VRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR--------- 413
+RLW+ G ++ ++ + + R + G D +K+W+
Sbjct: 200 IRLWDIECGACLRVLEGHEELVRCIRFDNKRIVS---GAYDGKIKVWDLVAALDPRAPAG 256
Query: 414 LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
+ L H R+ L D+ + ++S D+TI IW+
Sbjct: 257 TLCLRTLVEHSGRVFR--LQFDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 2e-07
Identities = 42/327 (12%), Positives = 92/327 (28%), Gaps = 52/327 (15%)
Query: 3 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQY 62
C K + ++ + +G D T+++W+ + K + + L ++
Sbjct: 9 HCRSETSKGVYCLQYDDQKIVSGLR--DNTIKIWDKNTLECKRILTGHTGSVLCLQYDER 66
Query: 63 RESSRSKMVNTDRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDR 122
+ S + V+ + H+ + + + S +
Sbjct: 67 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT 126
Query: 123 KKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVA 182
L + + D+ ++ +
Sbjct: 127 DITLRRVLVGHRAAVNVV-------------------------------DFDDKYIVSAS 155
Query: 183 LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242
D ++ WNT T + N + +A L V+ + I LW +
Sbjct: 156 GDRTIKVWNTSTCEFV------RTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA 209
Query: 243 LIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITR---------EGD 293
++ L H V + ++ + G G I +D+ D G
Sbjct: 210 CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR 269
Query: 294 VVCGLKWSPNGRYLASGSN-NTVKIWD 319
V + + S S+ +T+ IWD
Sbjct: 270 VFR---LQFDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (85), Expect = 0.003
Identities = 29/213 (13%), Positives = 67/213 (31%), Gaps = 15/213 (7%)
Query: 244 IQKLRTHMHQ---VIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKW 300
+Q++ V + ++ + G I +D T G V+C
Sbjct: 5 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC---L 61
Query: 301 SPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD 360
+ R + +GS+++ + + C D
Sbjct: 62 QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTC-------SKD 114
Query: 361 QTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEEL 420
+++ +W+ + + + + + + + D ++K+W + L
Sbjct: 115 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 174
Query: 421 KIHQERILSAVLSPDQTCVAAASADETISIWNC 453
H+ I A L V + S+D TI +W+
Sbjct: 175 NGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDI 205
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.7 bits (127), Expect = 2e-08
Identities = 27/327 (8%), Positives = 69/327 (21%), Gaps = 41/327 (12%)
Query: 179 LAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238
LA A + +T+ ++ P T +E +
Sbjct: 5 LAPARPDKLVVIDTEKMAVDKVITIAD-AGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63
Query: 239 QEERLIQKLRTH-----------------MHQVIAMCWNGNLLSCGTIGGNILHYDVRTH 281
+ ++ + L
Sbjct: 64 VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123
Query: 282 SDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQ------------------L 323
+ + L W+ +G L + +
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQP 183
Query: 324 DAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQV 383
D ++ + + + G+ ++ +
Sbjct: 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAY--RTGLLTMDLETGE--MAMREVRIM 239
Query: 384 TSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAAS 443
+S T L+ ++ + I+ + S +S D + V
Sbjct: 240 DVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGG 298
Query: 444 ADETISIWNCFPRDKKRKARQVGSGSS 470
A ++ ++ +KK + G+ S
Sbjct: 299 ALGDLAAYDAETLEKKGQVDLPGNASM 325
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.6 bits (124), Expect = 5e-08
Identities = 27/175 (15%), Positives = 60/175 (34%), Gaps = 10/175 (5%)
Query: 293 DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTL 351
+ + W+ + +A N+ V I++ + + H V + W P +
Sbjct: 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE-LKEHNGQVTGVDWAP-DSNR 65
Query: 352 LATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQY-RELVTSHGKQDCSLKMWE 410
+ T G D+ +W K + + E + G + +
Sbjct: 66 IVTCGT--DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICY 123
Query: 411 YPRLHLIEELKIHQERILSAVLSPDQTCVA----AASADETISIWNCFPRDKKRK 461
+ + + K ++ I S VLS D + A S D I++ + ++ + +
Sbjct: 124 FEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEER 178
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.5 bits (111), Expect = 2e-06
Identities = 29/321 (9%), Positives = 76/321 (23%), Gaps = 31/321 (9%)
Query: 177 DTLAVAL-DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVT---NTCTEY 232
+A+ + V+ + NK + E ++ ++ V W P + + +
Sbjct: 20 TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ-VTGVDWAPDSNRIVTCGTDRNAYVW 78
Query: 233 IDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREG 292
+ L+ + + N + G+ I +D+ +
Sbjct: 79 TLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK 138
Query: 293 ----DVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHL------------ 336
V+ + A + +I+ + +
Sbjct: 139 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 198
Query: 337 ---SAVKAIAWCPWEPTLLATGGGICDQTVRLWN-SMNGKEKCHVKTDSQVTSILWSEQY 392
V + + + D TV L + + ++ + +
Sbjct: 199 SSCGWVHGVCFSANGSRVAWVS---HDSTVCLADADKKMAVATLASETLPLLAVTFITES 255
Query: 393 RELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
+ H DC ++ Y + + + D+ S
Sbjct: 256 SLVAAGH---DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 312
Query: 453 CFPRDKKRKARQVGSGSSLEF 473
+ S S +
Sbjct: 313 SAAAGAGLDSLHKNSVSQISV 333
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.4 bits (108), Expect = 5e-06
Identities = 27/221 (12%), Positives = 62/221 (28%), Gaps = 21/221 (9%)
Query: 254 VIAMCWN--GNLLSCGTIGGNILHYDVRTHSDYPTAITRE-GDVVCGLKWSPNGRYLASG 310
+ WN ++ + Y+ + +E V G+ W+P+ + +
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 311 S-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ-TVRLWNS 368
+ +W + K V + + +A + + +G + N
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 369 MNGKEKCHVKTDSQVTSILWSEQYR----------------ELVTSHGKQDCSLKMWEYP 412
+ S V S+ W + + + + P
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 189
Query: 413 RLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNC 453
L+ E + S + + VA S D T+ + +
Sbjct: 190 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA 230
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 45.2 bits (105), Expect = 1e-05
Identities = 37/262 (14%), Positives = 80/262 (30%), Gaps = 21/262 (8%)
Query: 211 ISCVAWKPRTTDLAV-TNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCG 267
ISC AW T +A+ N +I + + +L+ H QV + W + N +
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 268 TIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKR 327
N + ++ + PT + + + + + I
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 328 PQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSIL 387
V + W P + G CD R++++ + + + +
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 189
Query: 388 WSEQYRELVTSHGK-----------------QDCSLKMWEYPRLHLIEELKIHQERILSA 430
+ E E +S G D ++ + + + + L +L+
Sbjct: 190 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV 249
Query: 431 VLSPDQTCVAAASADETISIWN 452
+ + VAA D ++
Sbjct: 250 TFITESSLVAAGH-DCFPVLFT 270
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 43.7 bits (101), Expect = 3e-05
Identities = 22/223 (9%), Positives = 59/223 (26%), Gaps = 10/223 (4%)
Query: 203 YPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGN 262
+ C + ++ T + E + NG+
Sbjct: 155 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGS 214
Query: 263 LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQ 322
++ + + D T + ++ + +A+G + ++ +
Sbjct: 215 RVAWVSHDSTVCLADADKKMAVATLASETLPLLAV-TFITESSLVAAGHDCFPVLFTY-- 271
Query: 323 LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQ 382
D+ +++ L K + D+ S +
Sbjct: 272 -DSAAGKLSFGGRLDVPKQSSQRGLTARERFQN---LDKKASSEGSAAAGAGLDSLHKNS 327
Query: 383 VTSILWSEQYRELVT--SHGKQDCSLKMWEYPRL-HLIEELKI 422
V+ I + + D + +W+ L +++LKI
Sbjct: 328 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDLKI 370
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.9 bits (99), Expect = 7e-05
Identities = 33/377 (8%), Positives = 92/377 (24%), Gaps = 33/377 (8%)
Query: 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT---DSQVTSILW 58
+ + + AW + T +A + V ++ K + + QVT + W
Sbjct: 3 HSFLVEPISCHAWNK-DRTQIAICPN--NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW 59
Query: 59 SEQYRE---SSRSKMVNTDRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLL 115
+ + + ++ S ++
Sbjct: 60 APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 119
Query: 116 HGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSIINDFYTSGLDWGY 175
+++ K P + + I Y ++
Sbjct: 120 SICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERP 179
Query: 176 HDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDL 235
T L+ + ++ V + + + L
Sbjct: 180 A-----------PTPWGSKMPFGELMFESSSSCGWVHGVCFSAN-GSRVAWVSHDSTVCL 227
Query: 236 WHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGD 293
++ + L + ++A+ + +L++ G + + + + + R
Sbjct: 228 ADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDV 286
Query: 294 VVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW---EPT 350
+ R + A + H ++V I+ + +
Sbjct: 287 PKQSSQRGLTARERFQNLDKKASSEG----SAAAGAGLDSLHKNSVSQISVLSGGKAKCS 342
Query: 351 LLATGGGICDQTVRLWN 367
T G D + +W+
Sbjct: 343 QFCTTGM--DGGMSIWD 357
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.3 bits (87), Expect = 0.002
Identities = 32/270 (11%), Positives = 67/270 (24%), Gaps = 14/270 (5%)
Query: 188 YTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL 247
+ + + C + + + L
Sbjct: 97 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 156
Query: 248 RTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYL 307
++ + + + V G+ +S NG +
Sbjct: 157 AAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRV 216
Query: 308 ASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLW 366
A S+ +TV + D + + V + E +L+A G C + +
Sbjct: 217 AWVSHDSTVCLADADK----KMAVATLASETLPLLAVTFITESSLVAAGHD-CFPVLFTY 271
Query: 367 NSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQER 426
+S GK + D S RE + K+ E +H+
Sbjct: 272 DSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK----ASSEGSAAAGAGLDSLHKNS 327
Query: 427 ILSAVLSPD----QTCVAAASADETISIWN 452
+ + + D +SIW+
Sbjct: 328 VSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 50.6 bits (120), Expect = 3e-07
Identities = 30/297 (10%), Positives = 62/297 (20%), Gaps = 35/297 (11%)
Query: 177 DTLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAY--ISCVAWKPRTTDLAVTNTCTEYI 233
L V D V + + + E A +
Sbjct: 74 RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQY 133
Query: 234 DLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIG--------------GNILHYDVR 279
+ + + T ++ + G IL D
Sbjct: 134 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT 193
Query: 280 THSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKI----WDFRQLDAKRPQVNNQCH 335
++ T + + RY + +N K+ +L A H
Sbjct: 194 DLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPH 253
Query: 336 LSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYREL 395
+ P + G D +V L + +
Sbjct: 254 PGRGANFVHPTFGPVWATSHMG--DDSVALIGTDPEGHPDNAWKILDS------------ 299
Query: 396 VTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
+ G +K + ++ + I +V D + +D
Sbjct: 300 FPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLP 356
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 42.5 bits (99), Expect = 8e-05
Identities = 32/212 (15%), Positives = 59/212 (27%), Gaps = 21/212 (9%)
Query: 271 GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQ 329
G I D T+ + G V + S +GRYL V + D +
Sbjct: 42 GQIALIDGSTYE--IKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA 99
Query: 330 VNNQC--HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH----------- 376
S + + +A + + + K
Sbjct: 100 EIKIGSEARSIETSKMEGWEDKYAIAGAYW--PPQYVIMDGETLEPKKIQSTRGMTYDEQ 157
Query: 377 -VKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV-LSP 434
+ +V +IL S E + + K+ + + +Y L+ ++ +I ER L L
Sbjct: 158 EYHPEPRVAAILASHYRPEFIVN-VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDG 216
Query: 435 DQTCVAAASADETISIWNCFPRDKKRKARQVG 466
A+ + K G
Sbjct: 217 SHRYFITAANARNKLVVIDTKEGKLVAIEDTG 248
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.3 bits (118), Expect = 3e-07
Identities = 21/286 (7%), Positives = 79/286 (27%), Gaps = 17/286 (5%)
Query: 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTT---------DLAVTNTCTEYID 234
V + +K +V++ + ++ ++ V + P V +
Sbjct: 39 SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98
Query: 235 LWHEQEERLIQKLRTHMHQVIAMCWNGN----LLSCGTIGGNILHYDVRTHSDYPTAITR 290
+ E + + + + + W+ + + + +
Sbjct: 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGH 158
Query: 291 EGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQC-HLSAVKAIAWCPWEP 349
+ + ++ ++ S V+ + + P
Sbjct: 159 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSG 218
Query: 350 TLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409
+ T G + S + + I + D ++++W
Sbjct: 219 EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVW 278
Query: 410 EYPRLHLIEELKIHQERILS---AVLSPDQTCVAAASADETISIWN 452
+ +++ + ++++ + V++ + + S D T++ +
Sbjct: 279 DVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 4e-06
Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 15/183 (8%)
Query: 285 PTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVN--NQCHLSAVKAI 342
P T+ L + P +A + + D+K P V S V +
Sbjct: 11 PQPSTQRNFTTH-LSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTV 69
Query: 343 AWCPWEP-TLLATGGGICDQTVRLWNSMNGKEKCHVKT---------DSQVTSILWSEQY 392
+ P + L +G V +W KE V+ ++ I W +
Sbjct: 70 KFSPIKGSQYLCSGD--ESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG 127
Query: 393 RELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
R L +D + + + E+ H +RI + L + + D+ ++
Sbjct: 128 RRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFY 187
Query: 453 CFP 455
P
Sbjct: 188 QGP 190
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 8e-04
Identities = 33/321 (10%), Positives = 87/321 (27%), Gaps = 22/321 (6%)
Query: 7 SAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRESS 66
+ +++ P + G VR + + K V+ +S++ + ++
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGK--SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 67 RSKMVNTDRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVL 126
S+ + + + + K + I
Sbjct: 76 GSQYLCS-------GDESGKVIVWGWTFDKESNSVEVNVKSEFQV----LAGPISDISWD 124
Query: 127 NQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALDTS 186
+ +R + G + S + ++ V D S
Sbjct: 125 FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLK-QSRPMRSMTVGDDGS 183
Query: 187 VYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246
V + K +++ V + P + + +T I + + ++
Sbjct: 184 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 243
Query: 247 LRTHMHQVI-----AMCWNGNLLSCGTIGGNILHYDVRTHS---DYPTAITREGDVVCGL 298
+ V + + I +DV T + + G+ G+
Sbjct: 244 IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGV 303
Query: 299 KWSPNGRYLASGSNNTVKIWD 319
+ NGR ++ + T+ ++
Sbjct: 304 VATGNGRIISLSLDGTLNFYE 324
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.1 bits (115), Expect = 6e-07
Identities = 32/283 (11%), Positives = 72/283 (25%), Gaps = 10/283 (3%)
Query: 177 DTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLW 236
D + TSVYT + E T + + P A +
Sbjct: 30 DKIQYCNGTSVYTVPVGSLT---DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWD 86
Query: 237 HEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVC 296
Q +++ + + G
Sbjct: 87 TTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQA 146
Query: 297 GLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGG 356
S + + + + + P K + + P
Sbjct: 147 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS 206
Query: 357 GICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQ------DCSLKMWE 410
D T+ L+N ++G + + DS + + G + D ++K+W
Sbjct: 207 TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 266
Query: 411 YPRLHLIEELKIHQERILSAV-LSPDQTCVAAASADETISIWN 452
L + + + + + + + + + SA+ I+ N
Sbjct: 267 VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.1 bits (102), Expect = 2e-05
Identities = 12/95 (12%), Positives = 25/95 (26%), Gaps = 6/95 (6%)
Query: 282 SDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKA 341
+ +P+ L +P G + + +V + + H
Sbjct: 7 ALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVP---VGSLTDTEIYTEHSHQTTV 63
Query: 342 IAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCH 376
P A+G VR+W++
Sbjct: 64 AKTSPSGY-YCASGD--VHGNVRIWDTTQTTHILK 95
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.1 bits (89), Expect = 9e-04
Identities = 42/256 (16%), Positives = 71/256 (27%), Gaps = 9/256 (3%)
Query: 204 PTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NG 261
P + P + N + Y + H HQ +G
Sbjct: 13 PRTARGTAVVLGNTPAGDKIQYCNGTSVYT--VPVGSLTDTEIYTEHSHQTTVAKTSPSG 70
Query: 262 NLLSCGTIGGNILHYDVR-THSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDF 320
+ G + GN+ +D T T I V + W + +A+ +
Sbjct: 71 YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV 130
Query: 321 RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380
D N A+ ++ + P P + +G + K T
Sbjct: 131 FLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK 190
Query: 381 SQVTSILWSEQYRELVTSHGKQ----DCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQ 436
+ + T + + H + SPD
Sbjct: 191 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 250
Query: 437 TCVAAASADETISIWN 452
T +A+ASAD+TI IWN
Sbjct: 251 TKIASASADKTIKIWN 266
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 48.2 bits (113), Expect = 1e-06
Identities = 20/317 (6%), Positives = 55/317 (17%), Gaps = 45/317 (14%)
Query: 176 HDTLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYID 234
H+ + V +++ + ++ + D P V N I
Sbjct: 8 HEYMIVTNYPNNLHVVDVASDT--VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY 65
Query: 235 LWHEQEERLIQKLRTHMHQ--------------------VIAMCWNGNLLSCGTIGGNIL 274
+ +
Sbjct: 66 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLE 125
Query: 275 HYDVRT-HSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVN-- 331
+ P V ++ + +G +G + + P N
Sbjct: 126 VFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWN 185
Query: 332 NQCHLSAVKAIAWCPWE---------------PTLLATGGGICDQTVRLWNSMNGKEKCH 376
+ + + W + GK
Sbjct: 186 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ 245
Query: 377 VKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPD 435
+++ L ++ + LI+
Sbjct: 246 EFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKK 302
Query: 436 QTCVAAASADETISIWN 452
+ ++++N
Sbjct: 303 GDKLYLGGTFNDLAVFN 319
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.8 bits (99), Expect = 6e-05
Identities = 16/138 (11%), Positives = 42/138 (30%), Gaps = 7/138 (5%)
Query: 249 THMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLA 308
+ ++ + + + + L D++T + ++ SP
Sbjct: 208 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQI 267
Query: 309 SGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNS 368
G N + +D +Q + +A+ + L GG + ++N
Sbjct: 268 YGVLNRLAKYDLKQRK----LIKAANLDHTYYCVAFDK-KGDKLYLGGT--FNDLAVFNP 320
Query: 369 MNGKEKCHVKTDSQVTSI 386
++ ++K S
Sbjct: 321 DTLEKVKNIKLPGGDMST 338
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 18/171 (10%), Positives = 42/171 (24%), Gaps = 16/171 (9%)
Query: 297 GLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRP-QVNNQCHLSAVKAIAWCPWEPTLLAT 354
G Y+ + N + + D + + + P T
Sbjct: 1 GPALKAGHEYMIVTNYPNNLHVVD---VASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVL 57
Query: 355 GGGICDQTVRLWNSMNGKEKCHV-------KTDSQVTSILWSEQYRELVTSHGKQDCSLK 407
+ + K H + + S S +E+ +
Sbjct: 58 NNH--YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND 115
Query: 408 M--WEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456
+ PRL + + + + P Q + A+ D ++ +
Sbjct: 116 HYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIY 166
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 40.5 bits (93), Expect = 4e-04
Identities = 22/214 (10%), Positives = 52/214 (24%), Gaps = 22/214 (10%)
Query: 260 NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYL--ASGSNNTVKI 317
+ N+ DV + + Y + + + +P+ R + +
Sbjct: 7 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYG 66
Query: 318 WDFRQLDAKRPQVNNQC---HLSAVKAIAWCPWEPTLLATG---------GGICDQTVRL 365
D + ++ + A P + AT + + +
Sbjct: 67 IDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEV 126
Query: 366 WNSMNGKEKCHVKT---DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI 422
+++ +G E V+T QV + ++ V + L +
Sbjct: 127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDI-----YKMDVKTGKYTVALPL 181
Query: 423 HQERILSAVLSPDQTCVAAASADETISIWNCFPR 456
S S+ R
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR 215
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.9 bits (112), Expect = 1e-06
Identities = 35/330 (10%), Positives = 86/330 (26%), Gaps = 52/330 (15%)
Query: 182 ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTC---------TEY 232
A T + + + + D ++ + +A +T T+Y
Sbjct: 25 AAVTQQFVIDGEAGRVI-----GMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDY 79
Query: 233 IDLWHEQEERLIQKLRTHMHQV---------IAMCWNGNLLSCGTIGGNILHYDVRTHSD 283
++++ + ++ +G L V
Sbjct: 80 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 139
Query: 284 YPTAITREGDVVCGLKWSPNGRYLAS--GSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKA 341
+ D +P+ ++ GS V + +V + +
Sbjct: 140 AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINH 199
Query: 342 IAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSEQYRELVT- 397
A+ L+ + + +G K + + W + V
Sbjct: 200 PAYSQKAGRLVWPTY---TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAY 256
Query: 398 -----------------SHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC-- 438
H + + + + + + I S +S D+
Sbjct: 257 HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLL 315
Query: 439 VAAASADETISIWNCFPRDKKRKARQVGSG 468
A ++ D+T+ I + ++ R Q+G G
Sbjct: 316 YALSTGDKTLYIHDAESGEELRSVNQLGHG 345
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.7 bits (111), Expect = 2e-06
Identities = 33/319 (10%), Positives = 81/319 (25%), Gaps = 37/319 (11%)
Query: 5 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT--DSQVTSILWSEQY 62
H A+ A++ + L + + + W+ G + +T I + +
Sbjct: 11 HNKAITALSSSA-DGKTLFSADA--EGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67
Query: 63 RESSRSKMVNTDRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDR 122
+ S + S DS + + ++ + H
Sbjct: 68 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 127
Query: 123 KKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVA 182
K+ S L D +
Sbjct: 128 GKLTEVPISYNSSCVALSN------------------------------DKQFVAVGGQD 157
Query: 183 LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242
VY + + + +P + + E
Sbjct: 158 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT 217
Query: 243 LIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREG--DVVCGLKW 300
T ++ + L+ G++ +++ +++ SD+P I V + W
Sbjct: 218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW 277
Query: 301 SPNGRYLASGSNNTVKIWD 319
+++G ++ +K W+
Sbjct: 278 LNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.1 bits (107), Expect = 5e-06
Identities = 31/271 (11%), Positives = 74/271 (27%), Gaps = 9/271 (3%)
Query: 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243
+ + +W+ T +P I+ + + + +
Sbjct: 33 EGHINSWDISTGI--SNRVFPDVHATMITGIKTTSKGD---LFTVSWDDHLKVVPAGGSG 87
Query: 244 IQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN 303
+ + +++ + + + G I + + +S + S +
Sbjct: 88 VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSND 147
Query: 304 GRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTV 363
+++A G ++ + +
Sbjct: 148 KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 207
Query: 364 RLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW--EYPRLHLIEELK 421
N ++V + WS L T G D S+ +W P H I
Sbjct: 208 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT--GSLDNSVIVWNMNKPSDHPIIIKG 265
Query: 422 IHQERILSAVLSPDQTCVAAASADETISIWN 452
H +++V+ ++T + +A D I WN
Sbjct: 266 AHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.1 bits (99), Expect = 4e-05
Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 3/120 (2%)
Query: 293 DVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTL 351
+ L S +G+ L S + WD +V H + + I
Sbjct: 13 KAITALSSSADGKTLFSADAEGHINSWDIS--TGISNRVFPDVHATMITGIKTTSKGDLF 70
Query: 352 LATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEY 411
+ + ++ + K SQ + S V + K +
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.5 bits (108), Expect = 3e-06
Identities = 37/315 (11%), Positives = 81/315 (25%), Gaps = 41/315 (13%)
Query: 5 HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRE 64
H + A+ P L +G D + W+S + + + + S+ S+
Sbjct: 12 HNKGITALTVNP-----LISGS--YDGRIMEWSSSSMHQD----HSNLIVSLDNSKAQEY 60
Query: 65 SSRSKMVNTDRYVVDRSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKK 124
SS S + + + S + + SF + R
Sbjct: 61 SSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLN 120
Query: 125 VLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSIINDFYTSGLDWGYHDTLAVALD 184
+ + + G + D
Sbjct: 121 SPGSAVSLSQNYVAVGL------------------------------EEGNTIQVFKLSD 150
Query: 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244
V + + + YI+ + + + + +
Sbjct: 151 LEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINA 210
Query: 245 QKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNG 304
+ +L++ G++ NI Y V+ A+ D V L W
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS 270
Query: 305 RYLASGSNNTVKIWD 319
++SG++ +K W+
Sbjct: 271 TLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.7 bits (93), Expect = 2e-04
Identities = 34/277 (12%), Positives = 75/277 (27%), Gaps = 29/277 (10%)
Query: 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243
D + W++ + + I + +++ T ++ + E
Sbjct: 30 DGRIMEWSSSSMHQD--------HSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFG- 80
Query: 244 IQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN 303
+ A + + S I G S +
Sbjct: 81 -----SQPKVASANNDGFTAVLTND------DDLLILQSFTGDIIKSVRLNSPGSAVSLS 129
Query: 304 GRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTV 363
Y+A G I F+ D + + I+ P E + A
Sbjct: 130 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY 189
Query: 364 RLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSH-------GKQDCSLKMWEYPR-LH 415
L + + +T + G D ++ ++ R +
Sbjct: 190 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK 249
Query: 416 LIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452
+I+ L H++ + + + T + ++ AD I WN
Sbjct: 250 IIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.4 bits (108), Expect = 5e-06
Identities = 40/384 (10%), Positives = 98/384 (25%), Gaps = 46/384 (11%)
Query: 3 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC-HVKTDSQVTSILWSEQ 61
+ H + + +++ C + + G D +++W++ + K+ S
Sbjct: 11 KAHDADIFSVSACN---SFTVSCSG--DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65
Query: 62 YRESSRSKMVNTDRYVVDRSSYD----------SLCSHYLLQQANDETISYREQKKRRHL 111
+ + +V +S+ + ++ + D S ++ L
Sbjct: 66 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125
Query: 112 SFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAPSIINDFYTSG- 170
+ + +++ + + + LE + T
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQ 185
Query: 171 ----LDWGYHDTLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCV----------- 214
+D +A + +V T + E + +
Sbjct: 186 FATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 245
Query: 215 ---------AWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLS 265
+ H + L + + ++ +G L
Sbjct: 246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 305
Query: 266 CGTIGGNILHYDVRTHSDYPTAITREGDV---VCGLKWSPNGRYLASGSNNTVKIWDFRQ 322
G + +DV+T T D+ L +G LA VK
Sbjct: 306 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 365
Query: 323 LDAKRPQVNNQ-CHLSAVKAIAWC 345
+N C + ++I W
Sbjct: 366 RSGMGADLNESLCCVCLDRSIRWF 389
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 45.6 bits (106), Expect = 6e-06
Identities = 31/270 (11%), Positives = 77/270 (28%), Gaps = 9/270 (3%)
Query: 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243
++ + +NK + P N P T + V N + + + +
Sbjct: 11 SDNISVIDVTSNK--VTATIPVGSNPM--GAVISPDGTKVYVANAHSNDVSIIDTATNNV 66
Query: 244 IQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN 303
I + T + + T S+ + G GL SP+
Sbjct: 67 IATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPD 126
Query: 304 GRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTV 363
G+ L +N + + + A+ + ++
Sbjct: 127 GKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKV----YVANFDSMSI 182
Query: 364 RLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH 423
+ +++ VK ++ + I + + + ++ + + + I
Sbjct: 183 SVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV 242
Query: 424 QERILSAVLSPD-QTCVAAASADETISIWN 452
++PD + A S T+S+ +
Sbjct: 243 GPDPAGIAVTPDGKKVYVALSFCNTVSVID 272
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 507 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.92 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.91 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.89 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.88 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.88 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.87 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.84 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.84 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.82 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.81 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.71 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.67 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.66 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.62 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.5 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.47 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.4 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.37 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.32 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.25 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.22 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.21 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.19 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.18 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.16 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.14 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.07 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.05 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.99 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.97 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.93 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.9 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.83 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.8 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.71 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 98.65 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.53 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.52 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.51 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.13 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.02 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.91 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.79 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.69 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.63 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.59 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.55 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.49 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.43 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.38 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.37 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.2 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.15 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.09 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.0 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.83 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.36 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.21 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.48 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.15 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 94.94 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 94.36 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 94.31 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 94.02 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.71 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 93.4 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 91.68 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 89.23 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 87.91 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 83.82 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 82.36 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-40 Score=307.29 Aligned_cols=291 Identities=17% Similarity=0.247 Sum_probs=246.0
Q ss_pred cCCchhhhcCCCcccccceeeeeeCCCC-EEEEEcCCeEEEEECCCCce---eEEEecCCCCCCceEEEEEccCCCeEEE
Q psy8285 150 KAKPERILEAPSIINDFYTSGLDWGYHD-TLAVALDTSVYTWNTKTNKT---QLLVEYPTYDNAYISCVAWKPRTTDLAV 225 (507)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 225 (507)
+..|........+.+...|.+++|+|++ +++.+.|+.|+|||+.++.. .......+ |.+.|.+++|+|++++|++
T Consensus 36 ~~~p~~~~~~~~~~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~-h~~~I~~v~~s~dg~~l~s 114 (337)
T d1gxra_ 36 PGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLN-RDNYIRSCKLLPDGCTLIV 114 (337)
T ss_dssp TTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSC-TTSBEEEEEECTTSSEEEE
T ss_pred CCCCCCceEEEECCCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecC-CCCcEEEEEEcCCCCEEEE
Confidence 3334433333344456678999999998 67777799999999976542 23444455 8899999999999999999
Q ss_pred EeCCCCcEEEEeCCCc--eeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEc
Q psy8285 226 TNTCTEYIDLWHEQEE--RLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWS 301 (507)
Q Consensus 226 ~~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 301 (507)
+ +.||.|++||+... +....+..|...+..+.| ++.++++++.++.|++|++.+.+ .......|...+.+++|+
T Consensus 115 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~-~~~~~~~~~~~v~~l~~s 192 (337)
T d1gxra_ 115 G-GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDIS 192 (337)
T ss_dssp E-ESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEEC
T ss_pred e-ecccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence 9 99999999998754 556677889999999999 68899999999999999999875 566777889999999999
Q ss_pred CCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC
Q psy8285 302 PNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380 (507)
Q Consensus 302 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 380 (507)
++++.+++++ |+.+++||++++ +.+..+. |...|.+++|+|++..+++ ++. |+.+++||+++++......+.
T Consensus 193 ~~~~~~~~~~~d~~v~i~d~~~~---~~~~~~~-~~~~i~~l~~~~~~~~l~~-~~~--d~~i~i~d~~~~~~~~~~~~~ 265 (337)
T d1gxra_ 193 NDGTKLWTGGLDNTVRSWDLREG---RQLQQHD-FTSQIFSLGYCPTGEWLAV-GME--SSNVEVLHVNKPDKYQLHLHE 265 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTT---EEEEEEE-CSSCEEEEEECTTSSEEEE-EET--TSCEEEEETTSSCEEEECCCS
T ss_pred ccccccccccccccccccccccc---eeecccc-cccceEEEEEcccccccce-ecc--ccccccccccccccccccccc
Confidence 9999999999 699999999987 5555554 8899999999999865554 443 999999999999887766666
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
..|.+++|+|++++|++ ++.||.|++||+.+++++..+. |...|++++|+|++++|++|+.||+|+|||+
T Consensus 266 ~~i~~v~~s~~g~~l~s--~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 266 SCVLSLKFAYCGKWFVS--TGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SCEEEEEECTTSSEEEE--EETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred cccceEEECCCCCEEEE--EeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 89999999999999999 7899999999999999988765 7889999999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-39 Score=300.69 Aligned_cols=232 Identities=16% Similarity=0.257 Sum_probs=201.9
Q ss_pred ceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 167 YTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 167 ~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.|.+++|+|++ +++++.|+.|++||+..........+.+ |...+.+++|+|++.+++++ +.++.|++|++.+++..
T Consensus 99 ~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~-~~d~~i~~~~~~~~~~~ 176 (337)
T d1gxra_ 99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS-SAPACYALAISPDSKVCFSC-CSDGNIAVWDLHNQTLV 176 (337)
T ss_dssp BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEEC-SSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEEE
T ss_pred cEEEEEEcCCCCEEEEeeccccccccccccccccccccccc-cccccccccccccccccccc-ccccccccccccccccc
Confidence 46789999987 6667899999999998766555555555 88999999999999999998 89999999999999999
Q ss_pred EEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcC
Q psy8285 245 QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR 321 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~ 321 (507)
.....|...+.+++| ++..+++++.|+.+++||+++++ ......+...|.+++|+|+++++++++ |+.+++||++
T Consensus 177 ~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~--~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~ 254 (337)
T d1gxra_ 177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR--QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN 254 (337)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ccccccccccccccccccccccccccccccccccccccce--eecccccccceEEEEEcccccccceecccccccccccc
Confidence 999999999999999 68899999999999999999875 233446788999999999999999998 6999999998
Q ss_pred CCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEecc
Q psy8285 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGK 401 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~ 401 (507)
.. .......|...|++++|+|+++.+++ ++. |+.|++||+.+++.+..+.+...|.+++|+|++++|++ |+
T Consensus 255 ~~----~~~~~~~~~~~i~~v~~s~~g~~l~s-~s~--Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t--~s 325 (337)
T d1gxra_ 255 KP----DKYQLHLHESCVLSLKFAYCGKWFVS-TGK--DNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVT--GS 325 (337)
T ss_dssp SS----CEEEECCCSSCEEEEEECTTSSEEEE-EET--TSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEE--EE
T ss_pred cc----ccccccccccccceEEECCCCCEEEE-EeC--CCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEE--Ee
Confidence 86 34456679999999999999965554 443 99999999999999999888899999999999999999 78
Q ss_pred CCCeEEEEeC
Q psy8285 402 QDCSLKMWEY 411 (507)
Q Consensus 402 ~d~~i~v~d~ 411 (507)
.||.|+|||+
T Consensus 326 ~D~~I~vWdl 335 (337)
T d1gxra_ 326 GDKKATVYEV 335 (337)
T ss_dssp TTSCEEEEEE
T ss_pred CCCeEEEEEE
Confidence 9999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5e-39 Score=303.41 Aligned_cols=237 Identities=22% Similarity=0.395 Sum_probs=195.5
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY 284 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 284 (507)
|...|.+++|+|++++|+++ +.||.|++||...++.+....+|...|.++.+ ++..+++++.++.+++||.++.. .
T Consensus 120 ~~~~V~~l~~s~~~~~l~s~-~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~-~ 197 (388)
T d1erja_ 120 SDLYIRSVCFSPDGKFLATG-AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ-C 197 (388)
T ss_dssp CCCBEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-E
T ss_pred CCCCEEEEEECCCCCcceec-ccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccc-c
Confidence 77889999999999999999 99999999999999999999999999999999 68899999999999999999765 3
Q ss_pred ceeeecCCCceEEEEEc-CCCCEEEEEe-CCcEEEEEcCCCCCCCCeee-------ecCCCCCeeEEEEccCCCcEEEEE
Q psy8285 285 PTAITREGDVVCGLKWS-PNGRYLASGS-NNTVKIWDFRQLDAKRPQVN-------NQCHLSAVKAIAWCPWEPTLLATG 355 (507)
Q Consensus 285 ~~~~~~~~~~v~~~~~~-~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~ 355 (507)
......+. ...++.++ +++++|++++ |+.|++||.+++ ..... ..+|...|.+++|+|++..+++ +
T Consensus 198 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~---~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~ 272 (388)
T d1erja_ 198 SLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG---FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS-G 272 (388)
T ss_dssp EEEEECSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTC---CEEEEEC------CCCSSCEEEEEECTTSSEEEE-E
T ss_pred cccccccc-ccccccccCCCCCeEEEEcCCCeEEEeecccC---ccceeeccccccccCCCCCEEEEEECCCCCEEEE-E
Confidence 33344444 44455555 5889999998 699999999876 33322 3458889999999999865554 4
Q ss_pred ccCCCCeEEEEeCCCCCee------------eeeec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec
Q psy8285 356 GGICDQTVRLWNSMNGKEK------------CHVKT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI 422 (507)
Q Consensus 356 ~~~~d~~i~i~d~~~~~~~------------~~~~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~ 422 (507)
+. |+.|++||+++++.. ..... ...+.+++|+|++++|++ |+.||.|++||+++++++.++++
T Consensus 273 ~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--g~~dg~i~vwd~~~~~~~~~l~~ 348 (388)
T d1erja_ 273 SL--DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS--GSKDRGVLFWDKKSGNPLLMLQG 348 (388)
T ss_dssp ET--TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEE--EETTSEEEEEETTTCCEEEEEEC
T ss_pred EC--CCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEE--EeCCCEEEEEECCCCcEEEEEeC
Confidence 43 999999999876432 22222 367999999999999999 88999999999999999999999
Q ss_pred cccceeEEEE------CCCCCEEEEEeCCCcEEEEecC
Q psy8285 423 HQERILSAVL------SPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 423 ~~~~i~~~~~------s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
|.+.|.++++ +|++++|++|+.||+|+||+++
T Consensus 349 H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp CSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 9999999875 6789999999999999999985
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.6e-38 Score=289.56 Aligned_cols=272 Identities=16% Similarity=0.219 Sum_probs=228.9
Q ss_pred eeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee--EEE
Q psy8285 170 GLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL--IQK 246 (507)
Q Consensus 170 ~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~--~~~ 246 (507)
.++++|++ .++.+.++.|.+|++.+++....+. + |...|++++|+|+|++|+++ +.||.|++||+.+++. ...
T Consensus 22 ~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~--~-H~~~v~~~~~sp~g~~latg-~~dg~i~iwd~~~~~~~~~~~ 97 (311)
T d1nr0a1 22 VLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYT--E-HSHQTTVAKTSPSGYYCASG-DVHGNVRIWDTTQTTHILKTT 97 (311)
T ss_dssp CCEECTTSSEEEEEETTEEEEEETTCSSCCEEEC--C-CSSCEEEEEECTTSSEEEEE-ETTSEEEEEESSSTTCCEEEE
T ss_pred EEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEc--C-CCCCEEEEEEeCCCCeEecc-ccCceEeeeeeeccccccccc
Confidence 58889987 7777788899999999888776654 4 99999999999999999999 9999999999988754 355
Q ss_pred EeecCccEEEEEe--eCCEEEEEecC--CeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCE-EEEEe-CCcEEEEEc
Q psy8285 247 LRTHMHQVIAMCW--NGNLLSCGTIG--GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LASGS-NNTVKIWDF 320 (507)
Q Consensus 247 ~~~~~~~v~~~~~--~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~-d~~i~i~d~ 320 (507)
+..|..+|.+++| ++++|++++.+ ..+++|++++.+ ....+..|...|++++|+|++++ +++|+ |+.|++||+
T Consensus 98 ~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~-~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~ 176 (311)
T d1nr0a1 98 IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGT-SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 176 (311)
T ss_dssp EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCC-BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEET
T ss_pred cccccCcccccccccccccccccccccccccccccccccc-ccccccccccccccccccccceeeecccccccccccccc
Confidence 7789999999999 68889888754 569999999876 56677889999999999999985 77777 699999999
Q ss_pred CCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec--------CCCeEEEEECCCC
Q psy8285 321 RQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT--------DSQVTSILWSEQY 392 (507)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--------~~~i~~~~~s~~~ 392 (507)
++. +.......|..+|.++.|+|+++.+++ ++. |+.|++||+.+++....+.. ...|.+++|+|++
T Consensus 177 ~~~---~~~~~~~~~~~~i~~v~~~p~~~~l~~-~~~--d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~ 250 (311)
T d1nr0a1 177 PPF---KFKSTFGEHTKFVHSVRYNPDGSLFAS-TGG--DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 250 (311)
T ss_dssp TTB---EEEEEECCCSSCEEEEEECTTSSEEEE-EET--TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred ccc---ccccccccccccccccccCcccccccc-ccc--cccccccccccccccccccccccccccccccccccccCCCC
Confidence 987 778888889999999999999865554 443 99999999999887776642 2579999999999
Q ss_pred CeEEEEeccCCCeEEEEeCCCccEEEEeecccc-ceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 393 RELVTSHGKQDCSLKMWEYPRLHLIEELKIHQE-RILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 393 ~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
++|++ |+.||.|+|||+++++++.++..|.. ....+.+.++++.|++++.||.|++||++
T Consensus 251 ~~l~t--gs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 251 TKIAS--ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp SEEEE--EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred CEEEE--EeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 99999 78999999999999999999876643 22233444456689999999999999974
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=9.2e-39 Score=292.03 Aligned_cols=278 Identities=19% Similarity=0.332 Sum_probs=239.7
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|+||+++|++|+|+|++++ |+||+ .|++|+|||+.+++++.++. |...|.+
T Consensus 13 L~GH~~~I~~l~~sp~~~~-l~s~s--~Dg~i~iWd~~~~~~~~~~~~h~~~V~~------------------------- 64 (317)
T d1vyhc1 13 LSGHRSPVTRVIFHPVFSV-MVSAS--EDATIKVWDYETGDFERTLKGHTDSVQD------------------------- 64 (317)
T ss_dssp EECCSSCEEEEEECSSSSE-EEEEE--SSSCEEEEETTTCCCCEEECCCSSCEEE-------------------------
T ss_pred EcCCCCCeEEEEEcCCCCE-EEEEe--CCCeEEEEECCCCCEEEEEeCCCCcEEE-------------------------
Confidence 7899999999999999986 88988 89999999999999887665 3444433
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 65 -------------------------------------------------------------------------------- 64 (317)
T d1vyhc1 65 -------------------------------------------------------------------------------- 64 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
++|+|++ ++++..++.+.+|+....+..... .+ |...+.++.|+|+++.++++ +.|+.+++||+
T Consensus 65 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~ 130 (317)
T d1vyhc1 65 ----------ISFDHSGKLLASCSADMTIKLWDFQGFECIRTM--HG-HDHNVSSVSIMPNGDHIVSA-SRDKTIKMWEV 130 (317)
T ss_dssp ----------EEECTTSSEEEEEETTSCCCEEETTSSCEEECC--CC-CSSCEEEEEECSSSSEEEEE-ETTSEEEEEET
T ss_pred ----------Eeeeccccccccccccccccccccccccccccc--cc-ccccceeeeccCCCceEEee-ccCcceeEeec
Confidence 4455554 445567888889988776654433 33 88999999999999999999 99999999999
Q ss_pred CCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCC------------
Q psy8285 239 QEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNG------------ 304 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~------------ 304 (507)
.+++.+..+..|...+.+++| ++.+|++++.|+.|++|++.+.. ....+..|...+.+++|+|++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 209 (317)
T d1vyhc1 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE-CKAELREHRHVVECISWAPESSYSSISEATGSE 209 (317)
T ss_dssp TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred ccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccce-eeEEEecCCCCceEEEEeeccccceeeccccce
Confidence 999999999999999999999 68999999999999999999876 566777889999999998754
Q ss_pred --------CEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee
Q psy8285 305 --------RYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC 375 (507)
Q Consensus 305 --------~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 375 (507)
.++++++ |+.|++||++++ +++..+.+|...|.+++|+|+++.+++.+. |+.|++||+++++++.
T Consensus 210 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~ 283 (317)
T d1vyhc1 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVGHDNWVRGVLFHSGGKFILSCAD---DKTLRVWDYKNKRCMK 283 (317)
T ss_dssp -------CCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECSSSSCEEEEET---TTEEEEECCTTSCCCE
T ss_pred eeeeccCCceeEeccCCCEEEEEECCCC---cEEEEEeCCCCCEEEEEECCCCCEEEEEEC---CCeEEEEECCCCcEEE
Confidence 4677787 699999999988 788889999999999999999966655444 9999999999999999
Q ss_pred eeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEe
Q psy8285 376 HVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWE 410 (507)
Q Consensus 376 ~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d 410 (507)
.+..+ ..|++++|+|++++|++ |+.||.|+|||
T Consensus 284 ~~~~h~~~V~~~~~s~~~~~l~s--~s~Dg~i~iWd 317 (317)
T d1vyhc1 284 TLNAHEHFVTSLDFHKTAPYVVT--GSVDQTVKVWE 317 (317)
T ss_dssp EEECCSSCEEEEEECSSSSCEEE--EETTSEEEEEC
T ss_pred EEcCCCCCEEEEEEcCCCCEEEE--EeCCCeEEEeC
Confidence 99876 78999999999999999 88999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-38 Score=295.14 Aligned_cols=317 Identities=17% Similarity=0.259 Sum_probs=250.4
Q ss_pred Ccccccce-eeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEee
Q psy8285 2 NQCHLSAV-KAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVD 79 (507)
Q Consensus 2 l~gH~~~V-~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 79 (507)
|+||.+.| +|++| +|++ |+||+ .|++|+|||+.+++++.++. |...|.+
T Consensus 8 L~GH~~~vitc~~~--~~~~-l~tgs--~Dg~i~vWd~~~~~~~~~l~~H~~~V~~------------------------ 58 (355)
T d1nexb2 8 LRGHMTSVITCLQF--EDNY-VITGA--DDKMIRVYDSINKKFLLQLSGHDGGVWA------------------------ 58 (355)
T ss_dssp EECCSSSCEEEEEE--ETTE-EEEEE--TTTEEEEEETTTTEEEEEEECCSSCEEE------------------------
T ss_pred ECCcCCCcEEEEEE--CCCE-EEEEe--CCCeEEEEECCCCcEEEEEECCCCCEEE------------------------
Confidence 78999886 67665 5565 88998 89999999999999888776 4444444
Q ss_pred cCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcC
Q psy8285 80 RSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEA 159 (507)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (507)
T Consensus 59 -------------------------------------------------------------------------------- 58 (355)
T d1nexb2 59 -------------------------------------------------------------------------------- 58 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 160 PSIINDFYTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 160 ~~~~~~~~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
++|+|++ +++++.|+.|++|+....+......... +........+.+++.+++++ +.|+.|++||+
T Consensus 59 -----------l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~d~~i~iw~~ 125 (355)
T d1nexb2 59 -----------LKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHN-STVRCLDIVEYKNIKYIVTG-SRDNTLHVWKL 125 (355)
T ss_dssp -----------EEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCS-SCEEEEEEEEETTEEEEEEE-ETTSEEEEEEC
T ss_pred -----------EEEcCCCEEEEEeccccccccccccccccccccccc-ccccccccccccccceeeee-cCCCcEEEEEc
Confidence 4455555 6778899999999999888776666544 55666778888999999998 99999999999
Q ss_pred CCceeEE-----------------------EEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCce
Q psy8285 239 QEERLIQ-----------------------KLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVV 295 (507)
Q Consensus 239 ~~~~~~~-----------------------~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 295 (507)
.+..... ....|...+.....+++.++++..|+.|++||+++.+ .......+...+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~ 204 (355)
T d1nexb2 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK-CLYILSGHTDRI 204 (355)
T ss_dssp CC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE-EEEEECCCSSCE
T ss_pred cCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeeccccc-ceeeeecccccc
Confidence 8654322 2334556677777789999999999999999999875 456667788889
Q ss_pred EEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCee
Q psy8285 296 CGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK 374 (507)
Q Consensus 296 ~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~ 374 (507)
.++.|+|+++++++++ |+.|++||++++ ..+..+.+|...|.++++++ .++++++. |+.|++||+++....
T Consensus 205 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~h~~~v~~~~~~~---~~l~~~~~--dg~i~iwd~~~~~~~ 276 (355)
T d1nexb2 205 YSTIYDHERKRCISASMDTTIRIWDLENG---ELMYTLQGHTALVGLLRLSD---KFLVSAAA--DGSIRGWDANDYSRK 276 (355)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCCCEEEECS---SEEEEECT--TSEEEEEETTTCCEE
T ss_pred ccccccccceeeecccccceEEeeecccc---cccccccccccccccccccc---ceeeeeec--cccccccccccccee
Confidence 9999999999999998 699999999988 88888999999999999975 35566554 999999999988766
Q ss_pred eeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEE-EeeccccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 375 CHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIE-ELKIHQERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 375 ~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~-~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
.............++++++++++ | .|+.|++||+++++++. .+.+|...|++++|+|+ .++++++.||.++||.+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~--g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 277 FSYHHTNLSAITTFYVSDNILVS--G-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp EEEECTTCCCCCEEEECSSEEEE--E-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred cccccCCceEEEEEcCCCCEEEE--E-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 55443333333456777776666 4 48999999999999885 46789999999999987 57888999999776654
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.8e-38 Score=287.21 Aligned_cols=276 Identities=19% Similarity=0.335 Sum_probs=250.0
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
...|++++|+|++ +++++.|+.|++||+.+++....+. + |...|.+++|+|++.+++++ ..++.+.+|+....+
T Consensus 17 ~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~--~-h~~~V~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 92 (317)
T d1vyhc1 17 RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK--G-HTDSVQDISFDHSGKLLASC-SADMTIKLWDFQGFE 92 (317)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC--C-CSSCEEEEEECTTSSEEEEE-ETTSCCCEEETTSSC
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEe--C-CCCcEEEEeeeccccccccc-ccccccccccccccc
Confidence 4468999999987 6677899999999999988766554 4 89999999999999999999 899999999999998
Q ss_pred eEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8285 243 LIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 243 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d 319 (507)
....+..|...+.++.+ +++.+++++.|+.+++||++++. ....+..|...+.+++|+|++++|++++ |+.|++|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~ 171 (317)
T d1vyhc1 93 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 171 (317)
T ss_dssp EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cccccccccccceeeeccCCCceEEeeccCcceeEeecccce-eeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEe
Confidence 88888899999999999 78999999999999999999876 5677888999999999999999999999 69999999
Q ss_pred cCCCCCCCCeeeecCCCCCeeEEEEccCCC-------------------cEEEEEccCCCCeEEEEeCCCCCeeeeeecC
Q psy8285 320 FRQLDAKRPQVNNQCHLSAVKAIAWCPWEP-------------------TLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------------~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 380 (507)
++.. .....+..|...+.++.|+|++. .++.+++. |+.|++||+++++++..+..+
T Consensus 172 ~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~~~~~~~~~~~~~~~~~ 246 (317)
T d1vyhc1 172 VATK---ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR--DKTIKMWDVSTGMCLMTLVGH 246 (317)
T ss_dssp TTTC---CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET--TSEEEEEETTTTEEEEEEECC
T ss_pred eccc---eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccC--CCEEEEEECCCCcEEEEEeCC
Confidence 9987 78888888999999999988643 24555554 999999999999999988876
Q ss_pred -CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 381 -SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 381 -~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
..+.+++|+|++++|++ ++.||.|++||+.+++++..+.+|...|++++|+|++++|++|+.||+|+|||
T Consensus 247 ~~~v~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 247 DNWVRGVLFHSGGKFILS--CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSCEEEEEECSSSSCEEE--EETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEECCCCCEEEE--EECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 78999999999999999 78999999999999999999999999999999999999999999999999997
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6e-36 Score=276.40 Aligned_cols=314 Identities=17% Similarity=0.259 Sum_probs=250.1
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|+||++.|.+ +++++|++ ||||+ .|++|+|||+.+++++.++. |...|.
T Consensus 12 l~GH~~~V~s-~~~~~g~~-l~sgs--~Dg~i~vWd~~~~~~~~~~~~h~~~V~-------------------------- 61 (342)
T d2ovrb2 12 LKGHDDHVIT-CLQFCGNR-IVSGS--DDNTLKVWSAVTGKCLRTLVGHTGGVW-------------------------- 61 (342)
T ss_dssp EECSTTSCEE-EEEEETTE-EEEEE--TTSCEEEEETTTCCEEEECCCCSSCEE--------------------------
T ss_pred ECCcCCceEE-EEEECCCE-EEEEe--CCCeEEEEECCCCCEEEEEeCCCCCEE--------------------------
Confidence 7899999865 46677887 89998 89999999999999887665 333333
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 62 -------------------------------------------------------------------------------- 61 (342)
T d2ovrb2 62 -------------------------------------------------------------------------------- 61 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC
Q psy8285 161 SIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
+++|+|+.+++++.|+.+++|+............ +...+...... ...++.+ ..|+.+.+|+..+
T Consensus 62 ---------~v~~~~~~l~s~s~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~-~~d~~i~~~~~~~ 126 (342)
T d2ovrb2 62 ---------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYG---HTSTVRCMHLH--EKRVVSG-SRDATLRVWDIET 126 (342)
T ss_dssp ---------EEEEETTEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEEE--TTEEEEE-ETTSEEEEEESSS
T ss_pred ---------EEEeCCCccccceecccccccccccccceecccc---cceeEeeeecc--ccccccc-ccceeEEEeeccc
Confidence 3555565578889999999999988776554443 45556555544 3466666 7999999999999
Q ss_pred ceeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEE
Q psy8285 241 ERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWD 319 (507)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d 319 (507)
++....+..+.............++.++.|+.|++||..... ....+.+|...+..+ .+++.++++++ |+.|++||
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg~i~~~d 203 (342)
T d2ovrb2 127 GQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETET-CLHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWD 203 (342)
T ss_dssp CCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTE-EEEEECCCSSCEEEE--EECSSEEEEEETTSCEEEEE
T ss_pred ccceeeeecccccceeeccccceeeeecCCCeEEEeecccce-eeEEEcCcccccccc--cCCCCEEEEEeCCCeEEEee
Confidence 988888877776666666688899999999999999998765 456667777666554 45788999998 79999999
Q ss_pred cCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC----CCeEEEEECCCCCeE
Q psy8285 320 FRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD----SQVTSILWSEQYREL 395 (507)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----~~i~~~~~s~~~~~l 395 (507)
++.+ +.+..+..|...+.++.+++ .++++++. |+.|++||+...+....+..+ ..+.++.++ ++++
T Consensus 204 ~~~~---~~~~~~~~~~~~v~~~~~~~---~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 273 (342)
T d2ovrb2 204 VETG---NCIHTLTGHQSLTSGMELKD---NILVSGNA--DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFV 273 (342)
T ss_dssp TTTC---CEEEEECCCCSCEEEEEEET---TEEEEEET--TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred cccc---eeeeEecccccceeEEecCC---CEEEEEcC--CCEEEEEecccccccccccccceeeeceeecccC--CCee
Confidence 9987 78888999999999988875 35555554 999999999999887777643 356666665 5688
Q ss_pred EEEeccCCCeEEEEeCCCccEEEEee-----ccccceeEEEECCCCCEEEEEeCCCc----EEEEecCC
Q psy8285 396 VTSHGKQDCSLKMWEYPRLHLIEELK-----IHQERILSAVLSPDQTCVAAASADET----ISIWNCFP 455 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d~~~~~~~~~~~-----~~~~~i~~~~~s~~~~~l~s~~~dg~----i~iw~~~~ 455 (507)
++ ++.||.|++||+++++.+..+. +|...|++++|+|++.+|++|+.||+ |++||+..
T Consensus 274 ~s--~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 274 IT--SSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EE--EETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EE--EcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 88 7899999999999999988774 57778999999999999999999986 99999864
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.3e-35 Score=274.19 Aligned_cols=275 Identities=21% Similarity=0.346 Sum_probs=239.1
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE- 241 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~- 241 (507)
...|.+++|+|++ +++++.||.|++||+.+++....+.. |...|.+++|+|++.+++++ +.|+.+++|+....
T Consensus 55 ~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~---~~~~v~~v~~~~~~~~l~~~-~~d~~i~~~~~~~~~ 130 (340)
T d1tbga_ 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL---RSSWVMTCAYAPSGNYVACG-GLDNICSIYNLKTRE 130 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEEC---SCSCEEEEEECTTSSEEEEE-ETTCCEEEEESSSSC
T ss_pred CCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEec---ccccEEeeEeeccceeeeee-cccceeecccccccc
Confidence 4568999999988 66778999999999999987766554 88999999999999999999 99999999997654
Q ss_pred ---eeEEEEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEE
Q psy8285 242 ---RLIQKLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVK 316 (507)
Q Consensus 242 ---~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~ 316 (507)
.....+.+|......... .+..+.....+.....+...... .......+...+....+.+.+.+++++. |+.|+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 209 (340)
T d1tbga_ 131 GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209 (340)
T ss_dssp SCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTE-EEEEEECCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred cccccceeccccccccccccccccccccccccccccccccccccc-ccccccccceeEeeeccccccceeEEeecCceEE
Confidence 345566777777776666 68888899999999999887654 4555666778899999999999999998 69999
Q ss_pred EEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECCCCC
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSEQYR 393 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~~~~ 393 (507)
+||++++ +++..+.+|...|++++|+|++..+ ++++. |+.|++||++..+....+... ..+.+++|+|+++
T Consensus 210 i~d~~~~---~~~~~~~~h~~~i~~v~~~p~~~~l-~s~s~--d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 283 (340)
T d1tbga_ 210 LWDVREG---MCRQTFTGHESDINAICFFPNGNAF-ATGSD--DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp EEETTTT---EEEEEECCCSSCEEEEEECTTSSEE-EEEET--TSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSC
T ss_pred EEECCCC---cEEEEEeCCCCCeEEEEECCCCCEE-EEEeC--CCeEEEEeecccccccccccccccCceEEEEECCCCC
Confidence 9999987 7888899999999999999998554 45544 999999999998887766433 5799999999999
Q ss_pred eEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 394 ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
+|++ |+.||.|++||+.+++++..+.+|..+|++++|+|++++|++|+.||.|+|||
T Consensus 284 ~l~~--g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 284 LLLA--GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEE--EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEE--EECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 9999 88999999999999999999999999999999999999999999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.9e-37 Score=281.63 Aligned_cols=280 Identities=16% Similarity=0.221 Sum_probs=214.6
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee--cCcccceeeccccccccccCCccCCceeEee
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK--TDSQVTSILWSEQYRESSRSKMVNTDRYVVD 79 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~--~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~ 79 (507)
|+||+++|+||+|||||++ |+||+ .|++|+|||+.+++++..+. |..
T Consensus 8 ~~GH~~~V~~l~~s~dg~~-l~s~s--~Dg~v~vWd~~~~~~~~~~~~~h~~---------------------------- 56 (299)
T d1nr0a2 8 RYGHNKAITALSSSADGKT-LFSAD--AEGHINSWDISTGISNRVFPDVHAT---------------------------- 56 (299)
T ss_dssp ECCCSSCEEEEEECTTSSE-EEEEE--TTSCEEEEETTTCCEEECSSCSCSS----------------------------
T ss_pred cCCCCCCcEEEEECCCCCE-EEEEc--CCCeEEEEECCCCcEEEEEcCCCCC----------------------------
Confidence 6899999999999999997 88988 89999999999988765432 111
Q ss_pred cCCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcC
Q psy8285 80 RSSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEA 159 (507)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (507)
T Consensus 57 -------------------------------------------------------------------------------- 56 (299)
T d1nr0a2 57 -------------------------------------------------------------------------------- 56 (299)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccceeeeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEe-cCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEe
Q psy8285 160 PSIINDFYTSGLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVE-YPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWH 237 (507)
Q Consensus 160 ~~~~~~~~i~~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd 237 (507)
.|.+++|+|++ +++++.|+.+++|+........... ... +...+.+++|+|+++.++++ .++.+++|+
T Consensus 57 -------~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~~~~~--~~~~i~~~~ 126 (299)
T d1nr0a2 57 -------MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANK-LSSQPLGLAVSADGDIAVAA--CYKHIAIYS 126 (299)
T ss_dssp -------CEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEE-CSSCEEEEEECTTSSCEEEE--ESSEEEEEE
T ss_pred -------cEEEEEeeccceeecccceeeEEEeccCCcccccccccccc-cccccccccccccccccccc--ccccccccc
Confidence 24467777776 8888999999999986543221111 111 67789999999999887766 567899998
Q ss_pred CCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCc
Q psy8285 238 EQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNT 314 (507)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~ 314 (507)
.. +..... ....+.+++| ++++|++++.|+.|++||+++.+........|...|.+++|+|++++|++++ |+.
T Consensus 127 ~~--~~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 202 (299)
T d1nr0a2 127 HG--KLTEVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK 202 (299)
T ss_dssp TT--EEEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cc--cccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 54 333332 3345667777 7899999999999999999876644445567899999999999999999998 699
Q ss_pred EEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeee--c-C-CCeEEEEECC
Q psy8285 315 VKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK--T-D-SQVTSILWSE 390 (507)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~-~-~~i~~~~~s~ 390 (507)
|++||+.++........+..|..+|++++|+|++. ++++++. |+.|++||+++++....+. . + ..+.++.| +
T Consensus 203 i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~l~sgs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~ 278 (299)
T d1nr0a2 203 VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV-RLATGSL--DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-L 278 (299)
T ss_dssp EEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSS-EEEEEET--TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-E
T ss_pred ccccccccccccccccccccccccccccccccccc-ceEEEcC--CCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-C
Confidence 99999988744445566677999999999999985 4555544 9999999998876443332 2 2 34666654 5
Q ss_pred CCCeEEEEeccCCCeEEEEeCC
Q psy8285 391 QYRELVTSHGKQDCSLKMWEYP 412 (507)
Q Consensus 391 ~~~~l~~~~g~~d~~i~v~d~~ 412 (507)
++++|++ ++.|+.|++||+.
T Consensus 279 ~~~~l~s--~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 279 NETTIVS--AGQDSNIKFWNVP 298 (299)
T ss_dssp ETTEEEE--EETTSCEEEEECC
T ss_pred CCCEEEE--EeCCCEEEEEecc
Confidence 6788888 7789999999984
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.4e-36 Score=282.92 Aligned_cols=283 Identities=14% Similarity=0.211 Sum_probs=226.6
Q ss_pred ceeeeeeCCCC-EE-EEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 167 YTSGLDWGYHD-TL-AVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 167 ~i~~~~~s~~~-~~-~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
.|++++|+|++ ++ +++.++.|++|+..+++......+.+ |.++|.+++|+|++++|+++ +.|+.|++||+.++...
T Consensus 9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~g-H~~~V~~l~fsp~~~~l~s~-s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTC-GTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEE-ETTSCEEEEEEETTEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecC-CCCCEEEEEECCCCCEEEEE-ECCCeEEEEeecccccc
Confidence 38899999998 55 45688999999999888777777778 99999999999999999999 89999999999877644
Q ss_pred --EEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC---ceeeecCCCceEEEEEcCCCCEEEEEe-CCcEE
Q psy8285 245 --QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY---PTAITREGDVVCGLKWSPNGRYLASGS-NNTVK 316 (507)
Q Consensus 245 --~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~ 316 (507)
..+..|...|.+++| +++.|++++.|+.+++|++...... ......|...|.+++|+|++++|++++ |+.|+
T Consensus 87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~ 166 (371)
T d1k8kc_ 87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 166 (371)
T ss_dssp EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEE
Confidence 345578899999999 7899999999999999998765422 233456888999999999999999998 79999
Q ss_pred EEEcCCCCC---------------CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-
Q psy8285 317 IWDFRQLDA---------------KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD- 380 (507)
Q Consensus 317 i~d~~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~- 380 (507)
+||...... ...+.....|...|.+++|+|+++.++ +++. |+.|++||+.+++.+..+..+
T Consensus 167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-s~~~--d~~i~iwd~~~~~~~~~~~~~~ 243 (371)
T d1k8kc_ 167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA-WVSH--DSTVCLADADKKMAVATLASET 243 (371)
T ss_dssp EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE-EEET--TTEEEEEEGGGTTEEEEEECSS
T ss_pred EEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccc-cccc--CCcceEEeeecccceeeeeccc
Confidence 999865421 123445567889999999999996554 4443 999999999999999988877
Q ss_pred CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC--ccEEE---------------------------------------E
Q psy8285 381 SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR--LHLIE---------------------------------------E 419 (507)
Q Consensus 381 ~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~--~~~~~---------------------------------------~ 419 (507)
.+|.+++|+|++++|++ |. |+.+++|.... ..... .
T Consensus 244 ~~v~s~~fs~d~~~la~--g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (371)
T d1k8kc_ 244 LPLLAVTFITESSLVAA--GH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 320 (371)
T ss_dssp CCEEEEEEEETTEEEEE--ET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred ccceeeeecCCCCEEEE--Ec-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEecccccccee
Confidence 68999999999988887 55 66666654322 11100 0
Q ss_pred eeccccceeEEEECCCC----CEEEEEeCCCcEEEEecCCCC
Q psy8285 420 LKIHQERILSAVLSPDQ----TCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 420 ~~~~~~~i~~~~~s~~~----~~l~s~~~dg~i~iw~~~~~~ 457 (507)
...|.+.|+++++.+.+ ..|+|++.||.|++||+++.+
T Consensus 321 ~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~ 362 (371)
T d1k8kc_ 321 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362 (371)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcCh
Confidence 01378889999998754 368999999999999996543
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.2e-35 Score=270.46 Aligned_cols=250 Identities=17% Similarity=0.196 Sum_probs=221.1
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY 284 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 284 (507)
+.+.+..++++|+|+.|+.+ .++.+.+||+.+.+....+.+|...|++++| ++++|++|+.||.|++||+.+....
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~--~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~ 93 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYC--NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEE--ETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred CCCCeEEEEEcCCCCEEEEE--eCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence 44566789999999999987 4667999999999999999999999999999 7999999999999999999987643
Q ss_pred -ceeeecCCCceEEEEEcCCCCEEEEEeC---CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC
Q psy8285 285 -PTAITREGDVVCGLKWSPNGRYLASGSN---NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD 360 (507)
Q Consensus 285 -~~~~~~~~~~v~~~~~~~~~~~l~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d 360 (507)
...+..|...|.+++|+|++++++++++ ..+++|+++++ +....+.+|...|++++|+|+++.++++++. |
T Consensus 94 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~---~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~--d 168 (311)
T d1nr0a1 94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG---TSNGNLTGQARAMNSVDFKPSRPFRIISGSD--D 168 (311)
T ss_dssp EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC---CBCBCCCCCSSCEEEEEECSSSSCEEEEEET--T
T ss_pred cccccccccCccccccccccccccccccccccccccccccccc---cccccccccccccccccccccceeeeccccc--c
Confidence 2456789999999999999999998873 66999999987 7777888899999999999999888888775 9
Q ss_pred CeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEee-------ccccceeEEEE
Q psy8285 361 QTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELK-------IHQERILSAVL 432 (507)
Q Consensus 361 ~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~-------~~~~~i~~~~~ 432 (507)
+.|++||+++++....+..+ ..|.++.|+|+++++++ ++.|+.|++||..+++.+..+. +|...|++++|
T Consensus 169 ~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~--~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~ 246 (311)
T d1nr0a1 169 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS--TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 246 (311)
T ss_dssp SCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE
T ss_pred cccccccccccccccccccccccccccccCcccccccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999988888776 78999999999999999 7889999999999988877663 57889999999
Q ss_pred CCCCCEEEEEeCCCcEEEEecCCCCcccceeec
Q psy8285 433 SPDQTCVAAASADETISIWNCFPRDKKRKARQV 465 (507)
Q Consensus 433 s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 465 (507)
+|++++|++|+.||.|+|||+.+++....+...
T Consensus 247 s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~ 279 (311)
T d1nr0a1 247 SPDGTKIASASADKTIKIWNVATLKVEKTIPVG 279 (311)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcEEEEEECC
Confidence 999999999999999999999998877665543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.5e-35 Score=272.30 Aligned_cols=279 Identities=18% Similarity=0.334 Sum_probs=227.8
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
|+||++.|+||+|+|++++ ||||+ .|++|+|||+.+++++.++. +...|.
T Consensus 51 L~GH~~~I~~l~~s~~~~~-l~sgs--~Dg~v~iWd~~~~~~~~~~~~~~~~v~-------------------------- 101 (340)
T d1tbga_ 51 LRGHLAKIYAMHWGTDSRL-LVSAS--QDGKLIIWDSYTTNKVHAIPLRSSWVM-------------------------- 101 (340)
T ss_dssp ECCCSSCEEEEEECTTSSE-EEEEE--TTTEEEEEETTTTEEEEEEECSCSCEE--------------------------
T ss_pred ECCCCCCEEEEEECCCCCE-EEEEE--CCCceeeeecccceeEEEEecccccEE--------------------------
Confidence 7899999999999999997 89998 89999999999999877665 333343
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 102 -------------------------------------------------------------------------------- 101 (340)
T d1tbga_ 102 -------------------------------------------------------------------------------- 101 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCC--EEEEEcCCeEEEEECCCCce--eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEE
Q psy8285 161 SIINDFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKT--QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLW 236 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iw 236 (507)
+++|+|++ +++++.|+.+.+|+...... .....+.+ |........... +..+... ..+.....+
T Consensus 102 ---------~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~ 169 (340)
T d1tbga_ 102 ---------TCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAG-HTGYLSCCRFLD-DNQIVTS-SGDTTCALW 169 (340)
T ss_dssp ---------EEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECC-CSSCEEEEEEEE-TTEEEEE-ETTTEEEEE
T ss_pred ---------eeEeeccceeeeeecccceeecccccccccccccceeccc-cccccccccccc-ccccccc-ccccccccc
Confidence 45555554 66678999999999776432 23334444 666666655554 4456666 789999999
Q ss_pred eCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CC
Q psy8285 237 HEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NN 313 (507)
Q Consensus 237 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~ 313 (507)
.............+...+....+ .+.++++++.|+.|++||+++.+ ....+..|...|++++|+|++++|++++ |+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~-~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~ 248 (340)
T d1tbga_ 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNAFATGSDDA 248 (340)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCc-EEEEEeCCCCCeEEEEECCCCCEEEEEeCCC
Confidence 99888888888888888888888 68899999999999999999876 5667888999999999999999999999 69
Q ss_pred cEEEEEcCCCCCCCCeeee--cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECC
Q psy8285 314 TVKIWDFRQLDAKRPQVNN--QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSE 390 (507)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~ 390 (507)
.|++||++.. .....+ ..+...+.+++|+|++..+++ ++. |+.|++||+.+++++..+..| ..|++++|+|
T Consensus 249 ~i~~~~~~~~---~~~~~~~~~~~~~~i~~~~~s~~~~~l~~-g~~--dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~ 322 (340)
T d1tbga_ 249 TCRLFDLRAD---QELMTYSHDNIICGITSVSFSKSGRLLLA-GYD--DFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322 (340)
T ss_dssp CEEEEETTTT---EEEEEECCTTCCSCEEEEEECSSSCEEEE-EET--TSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred eEEEEeeccc---ccccccccccccCceEEEEECCCCCEEEE-EEC--CCEEEEEECCCCcEEEEEcCCCCCEEEEEEeC
Confidence 9999999876 444333 446678999999999865554 443 999999999999999999876 7899999999
Q ss_pred CCCeEEEEeccCCCeEEEEe
Q psy8285 391 QYRELVTSHGKQDCSLKMWE 410 (507)
Q Consensus 391 ~~~~l~~~~g~~d~~i~v~d 410 (507)
++++|++ |+.||.|+|||
T Consensus 323 d~~~l~s--~s~Dg~v~iWd 340 (340)
T d1tbga_ 323 DGMAVAT--GSWDSFLKIWN 340 (340)
T ss_dssp TSSCEEE--EETTSCEEEEC
T ss_pred CCCEEEE--EccCCEEEEeC
Confidence 9999999 88999999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.2e-35 Score=276.33 Aligned_cols=235 Identities=19% Similarity=0.258 Sum_probs=184.4
Q ss_pred eeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE-
Q psy8285 168 TSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI- 244 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~- 244 (507)
|++++|+|++ +++++.|+.|++||+.++.......+.+ |...|++++|+|+++.|+++ +.|+.+++|++......
T Consensus 54 V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~l~~~-s~d~~i~i~~~~~~~~~~ 131 (371)
T d1k8kc_ 54 VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR-INRAARCVRWAPNEKKFAVG-SGSRVISICYFEQENDWW 131 (371)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCC-CSSCEEEEEECTTSSEEEEE-ETTSSEEEEEEETTTTEE
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccc-ccccccccccccccccceee-cccCcceeeeeecccccc
Confidence 4456666655 6677899999999999888777777777 88999999999999999999 99999999988765432
Q ss_pred ---EEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCc-----------------CceeeecCCCceEEEEEcC
Q psy8285 245 ---QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSD-----------------YPTAITREGDVVCGLKWSP 302 (507)
Q Consensus 245 ---~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~-----------------~~~~~~~~~~~v~~~~~~~ 302 (507)
.....|...|.+++| ++++|++++.|+.|++|+...... .......|...|.+++|+|
T Consensus 132 ~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 211 (371)
T d1k8kc_ 132 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 211 (371)
T ss_dssp EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred cccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeec
Confidence 233458889999999 689999999999999999875421 1233456788899999999
Q ss_pred CCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC--CCeeee--e
Q psy8285 303 NGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN--GKEKCH--V 377 (507)
Q Consensus 303 ~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~~~~--~ 377 (507)
++++|++++ |+.|++||++.+ +.+..+..|..+|.+++|+|++ .+++++. |+.+++|.... ++.... +
T Consensus 212 ~g~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~s~~fs~d~-~~la~g~---d~~~~~~~~~~~~~~~~~~~~~ 284 (371)
T d1k8kc_ 212 NGSRVAWVSHDSTVCLADADKK---MAVATLASETLPLLAVTFITES-SLVAAGH---DCFPVLFTYDSAAGKLSFGGRL 284 (371)
T ss_dssp SSSEEEEEETTTEEEEEEGGGT---TEEEEEECSSCCEEEEEEEETT-EEEEEET---TSSCEEEEEETTTTEEEECCCC
T ss_pred ccccccccccCCcceEEeeecc---cceeeeecccccceeeeecCCC-CEEEEEc---CCceEEEEeeCCCceEEEeeee
Confidence 999999999 699999999987 7888889999999999999998 6777776 77666654332 211000 0
Q ss_pred --------------------------------------ecCCCeEEEEECCCCC----eEEEEeccCCCeEEEEeCCC
Q psy8285 378 --------------------------------------KTDSQVTSILWSEQYR----ELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 378 --------------------------------------~~~~~i~~~~~s~~~~----~l~~~~g~~d~~i~v~d~~~ 413 (507)
.+.+.|+++++.+.+. .+++ ++.||.|++||+++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T--~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 285 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCT--TGMDGGMSIWDVRS 360 (371)
T ss_dssp CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEE--EETTSEEEEEEHHH
T ss_pred cCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEE--EcCCCeEEEEeCCc
Confidence 0225688999877543 3666 78999999999865
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-32 Score=258.89 Aligned_cols=311 Identities=18% Similarity=0.282 Sum_probs=240.6
Q ss_pred EEEEEcCCeEEEEECCCCceeE--EEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe-------
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQL--LVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR------- 248 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~------- 248 (507)
.+....++...+|+....+... +....+ |.+.|+|++|+|+|++|+++ + |+.|+|||+.+++.+..+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-H~~~V~~l~fs~dg~~lasg-~-d~~i~iW~~~~~~~~~~~~~~~~~~~ 107 (388)
T d1erja_ 31 ALKKQTNDYYILYNPALPREIDVELHKSLD-HTSVVCCVKFSNDGEYLATG-C-NKTTQVYRVSDGSLVARLSDDSAANK 107 (388)
T ss_dssp TSEEECSSCEEEECTTSCCCEEEEEEEEEE-CSSCCCEEEECTTSSEEEEE-C-BSCEEEEETTTCCEEEEECC------
T ss_pred ccccCCCCcEEEeCCCCCcceeeeeEeeCC-CCCcEEEEEECCCCCEEEEE-e-CCeEEEEEecccceEeeecccccccc
Confidence 4566778889999976544322 222224 99999999999999999887 5 8999999999988776553
Q ss_pred -----------ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCc
Q psy8285 249 -----------THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNT 314 (507)
Q Consensus 249 -----------~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~ 314 (507)
.|...|.+++| ++++|++|+.||.|++||....+ ......+|...|.++.+++++..+++++ ++.
T Consensus 108 ~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 186 (388)
T d1erja_ 108 DPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 186 (388)
T ss_dssp -----------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred cccccccccccCCCCCEEEEEECCCCCcceecccccccccccccccc-ccccccccccccccccccccccccccccccee
Confidence 35667999999 78999999999999999998875 5667788999999999999999999998 599
Q ss_pred EEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec--------CCCeEEE
Q psy8285 315 VKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT--------DSQVTSI 386 (507)
Q Consensus 315 i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--------~~~i~~~ 386 (507)
+++||.+.. ....... +.....++.+++....++++++. |+.|++||..+++....+.. ...|.++
T Consensus 187 i~~~d~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~--d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 260 (388)
T d1erja_ 187 VRIWDLRTG---QCSLTLS-IEDGVTTVAVSPGDGKYIAAGSL--DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV 260 (388)
T ss_dssp EEEEETTTT---EEEEEEE-CSSCEEEEEECSTTCCEEEEEET--TSCEEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred eeeeecccc---ccccccc-cccccccccccCCCCCeEEEEcC--CCeEEEeecccCccceeeccccccccCCCCCEEEE
Confidence 999999876 4444444 44556667777655567777665 99999999999987766542 2579999
Q ss_pred EECCCCCeEEEEeccCCCeEEEEeCCCccE------------EEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 387 LWSEQYRELVTSHGKQDCSLKMWEYPRLHL------------IEELKIHQERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 387 ~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~------------~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
+|+|++++|++ ++.|+.|++||+++++. ......|...|.+++|+|++++|++|+.||.|++||+.
T Consensus 261 ~~s~~~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~ 338 (388)
T d1erja_ 261 VFTRDGQSVVS--GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK 338 (388)
T ss_dssp EECTTSSEEEE--EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETT
T ss_pred EECCCCCEEEE--EECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 99999999999 78999999999976433 34455688899999999999999999999999999999
Q ss_pred CCCcccceee-cCCCcceEEeeccCccccceeeeecccccccceeEEe
Q psy8285 455 PRDKKRKARQ-VGSGSSLEFAILKQPVSLTALLRSRAVEKQQHAIAYT 501 (507)
Q Consensus 455 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 501 (507)
+++++..++. ...+.++.+.. ...++..+.+.+++..+..+.+.-.
T Consensus 339 ~~~~~~~l~~H~~~V~~~~~~~-~~~~spd~~~l~s~s~Dg~I~iW~~ 385 (388)
T d1erja_ 339 SGNPLLMLQGHRNSVISVAVAN-GSSLGPEYNVFATGSGDCKARIWKY 385 (388)
T ss_dssp TCCEEEEEECCSSCEEEEEECS-SCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred CCcEEEEEeCCCCCEEEEEEec-CcccCCCCCEEEEEeCCCEEEEEee
Confidence 9988776653 33444444443 2345556666666666666655543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.9e-33 Score=256.54 Aligned_cols=280 Identities=11% Similarity=0.182 Sum_probs=213.4
Q ss_pred eeeeeeCCCC-EEEEEcCCe--EEEEECCCCceeEEEecCCCCCCceEEEEEcc--CCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 168 TSGLDWGYHD-TLAVALDTS--VYTWNTKTNKTQLLVEYPTYDNAYISCVAWKP--RTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~~~~~--i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
..+++|+|++ .++.+.+.. |+.|+....+......+.+++...|++++|+| ++.+|+++ +.||+|+|||+..++
T Consensus 20 ~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasg-s~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG-DESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEE-ETTSEEEEEEEEEEG
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEE-eCCCCEEEeeecCCc
Confidence 4579999987 666555544 45566555555555666662357899999998 45788888 999999999987543
Q ss_pred e--------EEEEeecCccEEEEEe--eCCEEEEEec--CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCE-EEE
Q psy8285 243 L--------IQKLRTHMHQVIAMCW--NGNLLSCGTI--GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY-LAS 309 (507)
Q Consensus 243 ~--------~~~~~~~~~~v~~~~~--~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~ 309 (507)
. ...+..|..+|.+++| +++++++++. ++.+.+|+.++++ ....+.+|...|.+++|+|++.+ +++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~ 177 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN-SLGEVSGHSQRINACHLKQSRPMRSMT 177 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC-EEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccc-cceeeeecccccccccccccccceEEE
Confidence 2 2234568899999999 6888877764 6679999998775 56677889999999999999875 566
Q ss_pred Ee-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEE
Q psy8285 310 GS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSIL 387 (507)
Q Consensus 310 ~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~ 387 (507)
++ |+.+++||.+..+..........|...|.+++|+|++..++++++. |+.|++||+++++.+..+..+ ..+..+.
T Consensus 178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~--d~~i~iwd~~~~~~~~~l~~~~~~v~~~~ 255 (325)
T d1pgua1 178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS--DRKISCFDGKSGEFLKYIEDDQEPVQGGI 255 (325)
T ss_dssp EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET--TCCEEEEETTTCCEEEECCBTTBCCCSCE
T ss_pred eecccccccccccccccceecccccCCCCccEEeeeccccceecccccc--ccceeeeeeccccccccccccccccccce
Confidence 76 6999999988763223334445678889999999987777777765 999999999999999988765 3443333
Q ss_pred EC---CCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccc--eeEEEECCC-CCEEEEEeCCCcEEEEec
Q psy8285 388 WS---EQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQER--ILSAVLSPD-QTCVAAASADETISIWNC 453 (507)
Q Consensus 388 ~s---~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~--i~~~~~s~~-~~~l~s~~~dg~i~iw~~ 453 (507)
|+ |++++|++ ++.|+.|+|||+++++++..+..|... +..+++.+. +.+|++++.||.|++||+
T Consensus 256 ~s~~~~dg~~l~s--~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 256 FALSWLDSQKFAT--VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEESSSSEEEE--EETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred eeeeccCCCEEEE--EeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 33 68899998 789999999999999999888766543 334444432 347899999999999996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.9e-32 Score=248.35 Aligned_cols=271 Identities=14% Similarity=0.211 Sum_probs=206.1
Q ss_pred ccceeeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce
Q psy8285 165 DFYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 165 ~~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
...|++++|+|++ +++++.|+.|++||+.+++...... .+ |...|++++|+|++++++ + +.|+.+++|+.....
T Consensus 12 ~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~-~~-h~~~v~~v~~~~~g~~~~-~-~~d~~v~~~~~~~~~ 87 (299)
T d1nr0a2 12 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP-DV-HATMITGIKTTSKGDLFT-V-SWDDHLKVVPAGGSG 87 (299)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS-CS-CSSCEEEEEECTTSCEEE-E-ETTTEEEEECSSSSS
T ss_pred CCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc-CC-CCCcEEEEEeeccceeec-c-cceeeEEEeccCCcc
Confidence 3458999999987 6677899999999999887665432 23 889999999999987554 4 579999999986542
Q ss_pred e---EEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEE
Q psy8285 243 L---IQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVK 316 (507)
Q Consensus 243 ~---~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~ 316 (507)
. ......+...+.+++| +++.++++ .++.+.+|+.... .. ......+.+++|+|+++++++++ |+.|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~-~~~~i~~~~~~~~---~~--~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 161 (299)
T d1nr0a2 88 VDSSKAVANKLSSQPLGLAVSADGDIAVAA-CYKHIAIYSHGKL---TE--VPISYNSSCVALSNDKQFVAVGGQDSKVH 161 (299)
T ss_dssp SCTTSCCEEECSSCEEEEEECTTSSCEEEE-ESSEEEEEETTEE---EE--EECSSCEEEEEECTTSCEEEEEETTSEEE
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccccc---cc--ccccccccccccccccccccccccccccc
Confidence 2 2233457778888888 56666555 4678999995431 12 22345678999999999999998 69999
Q ss_pred EEEcCCCCCCCCe-eeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeee---ecC-CCeEEEEECCC
Q psy8285 317 IWDFRQLDAKRPQ-VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHV---KTD-SQVTSILWSEQ 391 (507)
Q Consensus 317 i~d~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~---~~~-~~i~~~~~s~~ 391 (507)
+||+++. +.. .....|...|++++|+|++..+++ ++. |+.|++||+.++...... ..+ ..|++++|+|+
T Consensus 162 ~~d~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~--d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 235 (299)
T d1nr0a2 162 VYKLSGA---SVSEVKTIVHPAEITSVAFSNNGAFLVA-TDQ--SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD 235 (299)
T ss_dssp EEEEETT---EEEEEEEEECSSCEEEEEECTTSSEEEE-EET--TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTT
T ss_pred ccccccc---cccccccccccccccccccccccccccc-ccc--cccccccccccccccccccccccccccccccccccc
Confidence 9999875 322 234458899999999999865555 443 999999999887655433 333 68999999999
Q ss_pred CCeEEEEeccCCCeEEEEeCCCccEE--EEeecc-ccceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 392 YRELVTSHGKQDCSLKMWEYPRLHLI--EELKIH-QERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 392 ~~~l~~~~g~~d~~i~v~d~~~~~~~--~~~~~~-~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
+++|++ |+.||.|++||+++++.. .....| ...+..+.| +++++|++++.|+.|++||+.
T Consensus 236 ~~~l~s--gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 236 NVRLAT--GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp SSEEEE--EETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred ccceEE--EcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 999999 889999999999876533 233333 445666655 567899999999999999983
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.9e-32 Score=246.75 Aligned_cols=231 Identities=16% Similarity=0.205 Sum_probs=179.0
Q ss_pred eeeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe
Q psy8285 170 GLDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 170 ~~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~ 248 (507)
++++++++ +++++.|+.+++|+.... . ....+.++.+++++..++++ .++.+.+|+..+++.+..+.
T Consensus 51 ~~~~~~~~~~~s~s~D~~v~~w~~~~~------~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 118 (287)
T d1pgua2 51 SLDNSKAQEYSSISWDDTLKVNGITKH------E----FGSQPKVASANNDGFTAVLT--NDDDLLILQSFTGDIIKSVR 118 (287)
T ss_dssp EEECCSTTCCEEEETTTEEEETTEEEE------E----CSSCEEEEEECSSSEEEEEE--TTSEEEEEETTTCCEEEEEE
T ss_pred EEEecCCCeEEEEeecccccccccccc------c----cccceeeeeeccCCceEEEe--ecccceeeeccceeeeeecc
Confidence 34444444 777889999999987432 2 33457888999988777765 67778999999988887776
Q ss_pred ecCccEEEEEeeCCEEEEEecCC-eEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCC
Q psy8285 249 THMHQVIAMCWNGNLLSCGTIGG-NILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAK 326 (507)
Q Consensus 249 ~~~~~v~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~ 326 (507)
. ...+.+++.++..+++++.++ .+++|++............+...+.+++|+|++++|++++ |+.|++||+.++
T Consensus 119 ~-~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~--- 194 (287)
T d1pgua2 119 L-NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR--- 194 (287)
T ss_dssp C-SSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---
T ss_pred c-cceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccc---
Confidence 4 456677888888888888775 6999999765433333445778899999999999999999 699999999876
Q ss_pred CCe-eeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCe
Q psy8285 327 RPQ-VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCS 405 (507)
Q Consensus 327 ~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~ 405 (507)
... ..+..|..+|.+++|+|.+..... +.+++.++++ |+.|+.
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~----------------------------------~~~~~~~l~s--gs~D~~ 238 (287)
T d1pgua2 195 EVKTSRWAFRTSKINAISWKPAEKGANE----------------------------------EEIEEDLVAT--GSLDTN 238 (287)
T ss_dssp EEEECCSCCCSSCEEEEEECCCC----------------------------------------CCSCCEEEE--EETTSC
T ss_pred ccccccccccccccceeeeccccccccc----------------------------------ccCCCCeeEe--ecCCCe
Confidence 332 345678999999999997632221 2345678888 889999
Q ss_pred EEEEeCCC-ccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEec
Q psy8285 406 LKMWEYPR-LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNC 453 (507)
Q Consensus 406 i~v~d~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~ 453 (507)
|++||+++ .+.+..+.+|...|++++|+|++ .|++++.|+.|++|++
T Consensus 239 i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 239 IFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred EEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 99999976 56677788999999999999986 6899999999999996
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.5e-30 Score=241.13 Aligned_cols=274 Identities=15% Similarity=0.227 Sum_probs=212.3
Q ss_pred eeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE
Q psy8285 168 TSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 168 i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~ 247 (507)
++|++++++.+++++.|+.|++||+.+++....+. + |.++|.+++|+|+ .+|+++ +.|+.|++|+....+.....
T Consensus 16 itc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~--~-H~~~V~~l~~s~~-~~l~s~-s~D~~i~iw~~~~~~~~~~~ 90 (355)
T d1nexb2 16 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS--G-HDGGVWALKYAHG-GILVSG-STDRTVRVWDIKKGCCTHVF 90 (355)
T ss_dssp EEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEE--C-CSSCEEEEEEETT-TEEEEE-ETTCCEEEEETTTTEEEEEE
T ss_pred EEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEE--C-CCCCEEEEEEcCC-CEEEEE-eccccccccccccccccccc
Confidence 56888876668888899999999999988765554 4 9999999999986 578888 89999999999998887776
Q ss_pred eecCccEE--EEEe--eCCEEEEEecCCeEEEEECCCCCcCce----------------------eeecCCCceEEEEEc
Q psy8285 248 RTHMHQVI--AMCW--NGNLLSCGTIGGNILHYDVRTHSDYPT----------------------AITREGDVVCGLKWS 301 (507)
Q Consensus 248 ~~~~~~v~--~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~----------------------~~~~~~~~v~~~~~~ 301 (507)
........ ...+ ++..+++++.|+.|++||+++...... ....|...+ ..+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~ 168 (355)
T d1nexb2 91 EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV--RTVS 168 (355)
T ss_dssp CCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCE--EEEE
T ss_pred ccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccc--cccc
Confidence 65444433 3333 577899999999999999987542111 111222333 3455
Q ss_pred CCCCEEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC
Q psy8285 302 PNGRYLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380 (507)
Q Consensus 302 ~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 380 (507)
+++++++++. |+.|++||++++ +.+.....+...+.++.|+|++..+++.+. |+.|++||+++++.+..+..+
T Consensus 169 ~~~~~~~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~h 242 (355)
T d1nexb2 169 GHGNIVVSGSYDNTLIVWDVAQM---KCLYILSGHTDRIYSTIYDHERKRCISASM---DTTIRIWDLENGELMYTLQGH 242 (355)
T ss_dssp EETTEEEEEETTSCEEEEETTTT---EEEEEECCCSSCEEEEEEETTTTEEEEEET---TSCEEEEETTTCCEEEEECCC
T ss_pred cccceeeeecccceeeeeecccc---cceeeeeccccccccccccccceeeecccc---cceEEeeeccccccccccccc
Confidence 6788998888 699999999987 777788888899999999999866655444 999999999999999988877
Q ss_pred -CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEE-EECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 381 -SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSA-VLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 381 -~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
..|.++++++ ++|++ ++.||.|++||+.+.... +..|...+..+ .+++++++|++| .|+.|++||+++++.
T Consensus 243 ~~~v~~~~~~~--~~l~~--~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~ 315 (355)
T d1nexb2 243 TALVGLLRLSD--KFLVS--AAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKL 315 (355)
T ss_dssp SSCCCEEEECS--SEEEE--ECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCB
T ss_pred ccccccccccc--ceeee--eeccccccccccccccee--cccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCE
Confidence 6789999874 68888 889999999999987654 44566666665 456677766655 589999999999887
Q ss_pred ccc
Q psy8285 459 KRK 461 (507)
Q Consensus 459 ~~~ 461 (507)
+..
T Consensus 316 ~~~ 318 (355)
T d1nexb2 316 VHA 318 (355)
T ss_dssp CCS
T ss_pred EEE
Confidence 643
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.9e-29 Score=226.96 Aligned_cols=264 Identities=16% Similarity=0.345 Sum_probs=215.0
Q ss_pred ceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 167 YTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 167 ~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
.|.|++|+++.+++++.|+.|+|||+.+++....+ .+ |...|++++| ++++|+++ +.|+.|++|++..+.....
T Consensus 17 ~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l--~~-H~~~V~~v~~--~~~~l~s~-s~D~~i~~~~~~~~~~~~~ 90 (293)
T d1p22a2 17 GVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRIL--TG-HTGSVLCLQY--DERVIITG-SSDSTVRVWDVNTGEMLNT 90 (293)
T ss_dssp CEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEE--CC-CSSCEEEEEC--CSSEEEEE-ETTSCEEEEESSSCCEEEE
T ss_pred CEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEE--ec-CCCCEeeeec--ccceeecc-ccccccccccccccccccc
Confidence 47788876555888899999999999998876655 45 9999999987 56789988 9999999999999988887
Q ss_pred EeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcC--ceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q psy8285 247 LRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDY--PTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQL 323 (507)
Q Consensus 247 ~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~ 323 (507)
...+.............++++..++.+.+|+....... ...+..|...+..+.+.+ ..+++++ |+.|++||++++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~ 168 (293)
T d1p22a2 91 LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTC 168 (293)
T ss_dssp ECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTC
T ss_pred ccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCC
Confidence 77777766666668889999999999999999876532 334556778888777765 4566666 799999999987
Q ss_pred CCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCC-CeEEEEECCCCCeEEEEeccC
Q psy8285 324 DAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDS-QVTSILWSEQYRELVTSHGKQ 402 (507)
Q Consensus 324 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~g~~ 402 (507)
+.+..+.++...+..+.+++ .. ++++.. |+.|++||+++.+.+.....+. .+. .+++++.+|++ |+.
T Consensus 169 ---~~~~~~~~~~~~v~~~~~~~--~~-l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s--g~~ 236 (293)
T d1p22a2 169 ---EFVRTLNGHKRGIACLQYRD--RL-VVSGSS--DNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVS--GAY 236 (293)
T ss_dssp ---CEEEEEECCSSCEEEEEEET--TE-EEEEET--TSCEEEEETTTCCEEEEECCCSSCEE--EEECCSSEEEE--EET
T ss_pred ---cEEEEEcccccccccccCCC--Ce-EEEecC--CCEEEEEecccceeeeeecccceeee--eccccceEEEE--EcC
Confidence 78888888988998888864 34 444443 9999999999999988887764 444 45677889998 889
Q ss_pred CCeEEEEeCCC---------ccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEe
Q psy8285 403 DCSLKMWEYPR---------LHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWN 452 (507)
Q Consensus 403 d~~i~v~d~~~---------~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~ 452 (507)
||.|++||+.. ..++..+.+|.+.|++++|+ +.+|++++.||+|++||
T Consensus 237 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred CCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 99999999743 35678889999999999994 57899999999999997
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1e-29 Score=232.83 Aligned_cols=250 Identities=15% Similarity=0.199 Sum_probs=203.9
Q ss_pred CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc--eeEEEEeecC-ccEEEEEe----eCCEEEEEecCCeEEEEECCC
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE--RLIQKLRTHM-HQVIAMCW----NGNLLSCGTIGGNILHYDVRT 280 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~--~~~~~~~~~~-~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~ 280 (507)
...+++++|+|+++.|+++++....|+.|+.... ..+..+.+|. ..|++++| ++.+|++|+.||+|++||+..
T Consensus 17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~ 96 (325)
T d1pgua1 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 96 (325)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence 3457899999999999988333345677775443 4466777774 67999999 467999999999999999976
Q ss_pred CCcCc-------eeeecCCCceEEEEEcCCCCEEEEEe---CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCc
Q psy8285 281 HSDYP-------TAITREGDVVCGLKWSPNGRYLASGS---NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPT 350 (507)
Q Consensus 281 ~~~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 350 (507)
..... .....|..+|.+++|+++++++++++ ++.+++|+.+++ +.+..+.+|...|.+++|+|+++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~ 173 (325)
T d1pgua1 97 DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG---NSLGEVSGHSQRINACHLKQSRPM 173 (325)
T ss_dssp EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC---CEEEECCSCSSCEEEEEECSSSSC
T ss_pred CcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc---ccceeeeecccccccccccccccc
Confidence 54221 22456788999999999999988776 378999999887 788888999999999999999988
Q ss_pred EEEEEccCCCCeEEEEeCCCCCeeeeeecC----CCeEEEEECCC-CCeEEEEeccCCCeEEEEeCCCccEEEEeecccc
Q psy8285 351 LLATGGGICDQTVRLWNSMNGKEKCHVKTD----SQVTSILWSEQ-YRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQE 425 (507)
Q Consensus 351 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----~~i~~~~~s~~-~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~ 425 (507)
++++++. |+.+++||....+....+... ..|.+++|+|+ +.++++ ++.|+.|++||+++++.+..+.+|..
T Consensus 174 ~~~~~~~--d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s--~~~d~~i~iwd~~~~~~~~~l~~~~~ 249 (325)
T d1pgua1 174 RSMTVGD--DGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT--VGSDRKISCFDGKSGEFLKYIEDDQE 249 (325)
T ss_dssp EEEEEET--TTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEE--EETTCCEEEEETTTCCEEEECCBTTB
T ss_pred eEEEeec--ccccccccccccccceecccccCCCCccEEeeeccccceeccc--cccccceeeeeecccccccccccccc
Confidence 7777765 999999999888766655432 56999999997 566777 78899999999999999999999988
Q ss_pred ceeEEEEC---CCCCEEEEEeCCCcEEEEecCCCCcccceee
Q psy8285 426 RILSAVLS---PDQTCVAAASADETISIWNCFPRDKKRKARQ 464 (507)
Q Consensus 426 ~i~~~~~s---~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 464 (507)
.+..+.|+ |++++|++++.|+.|+|||+.+++.+.....
T Consensus 250 ~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 291 (325)
T d1pgua1 250 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL 291 (325)
T ss_dssp CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEe
Confidence 88777776 7899999999999999999999887766543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=6.7e-30 Score=237.67 Aligned_cols=282 Identities=11% Similarity=0.007 Sum_probs=202.3
Q ss_pred eeeeeeCCCC--EEEEEcC--CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee
Q psy8285 168 TSGLDWGYHD--TLAVALD--TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL 243 (507)
Q Consensus 168 i~~~~~s~~~--~~~~~~~--~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~ 243 (507)
|.+++|+||+ +++++.+ ..|++||..+++..++. . |...|.+++|+|++++|+++ +.++.+++|++.+++.
T Consensus 45 v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~---~-~~~~v~~~~~spdg~~l~~~-~~~~~~~~~~~~~~~~ 119 (360)
T d1k32a3 45 IRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE---E-NLGNVFAMGVDRNGKFAVVA-NDRFEIMTVDLETGKP 119 (360)
T ss_dssp EEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC---C-CCCSEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCE
T ss_pred EEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee---C-CCceEEeeeeccccccccee-ccccccccccccccce
Confidence 3356677776 4444433 37999999988765443 3 88999999999999999999 9999999999999999
Q ss_pred EEEEeecCccEEEEEe--eCCEEEEEe----------cCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe
Q psy8285 244 IQKLRTHMHQVIAMCW--NGNLLSCGT----------IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS 311 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~--~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 311 (507)
...+..|...+.+++| ++++|+.+. .++.+++|++.+++ ......+...+..++|+|||+.|++++
T Consensus 120 ~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~--~~~~~~~~~~~~~~~~spdg~~l~~~s 197 (360)
T d1k32a3 120 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADSKNLYYLS 197 (360)
T ss_dssp EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred eeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCc--eeeecccccccccccccCCCCEEEEEe
Confidence 9999999999999999 788888654 34568999998765 445556777889999999999999998
Q ss_pred -CCcEEEEEcCCCCC----CCCeeeecCCCCCeeEEEEccCCCcEEEEEccC--CCCeEEEEeCCCCCeeeeeecCCCeE
Q psy8285 312 -NNTVKIWDFRQLDA----KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGI--CDQTVRLWNSMNGKEKCHVKTDSQVT 384 (507)
Q Consensus 312 -d~~i~i~d~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~i~ 384 (507)
++.+.+||...... .........+...+..+.|+|++..+....... ....+..++...++..........+.
T Consensus 198 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (360)
T d1k32a3 198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL 277 (360)
T ss_dssp SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEE
T ss_pred CCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCce
Confidence 59999999765411 011222233444555556666664332211100 01234444555555443333344555
Q ss_pred EEEECCCCC---eEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccc
Q psy8285 385 SILWSEQYR---ELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRK 461 (507)
Q Consensus 385 ~~~~s~~~~---~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 461 (507)
.+.+.+.+. +++. ++.++.|++||+.+++.. .|.+.|.+++|+|||++|++++.||.|++||+..++....
T Consensus 278 ~~~~~~~~~~~~~~~~--~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~ 351 (360)
T d1k32a3 278 IYSVPVHGEFAAYYQG--APEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351 (360)
T ss_dssp EEECCCCCSHHHHHHC--CCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEE
T ss_pred EEEEEecCCCeeEEEe--cCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceE
Confidence 556555543 4555 778999999999887543 3456699999999999999999999999999998877665
Q ss_pred e
Q psy8285 462 A 462 (507)
Q Consensus 462 ~ 462 (507)
+
T Consensus 352 ~ 352 (360)
T d1k32a3 352 V 352 (360)
T ss_dssp C
T ss_pred E
Confidence 3
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.4e-27 Score=217.06 Aligned_cols=273 Identities=17% Similarity=0.262 Sum_probs=216.3
Q ss_pred eeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE
Q psy8285 168 TSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 168 i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~ 247 (507)
+.+++++.+.+++++.|+.|++||+.+++.... +.+ |...|.+++|+|+ +|+++ +.|+.+++|+..........
T Consensus 20 ~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~--~~~-h~~~V~~v~~~~~--~l~s~-s~D~~~~~~~~~~~~~~~~~ 93 (342)
T d2ovrb2 20 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT--LVG-HTGGVWSSQMRDN--IIISG-STDRTLKVWNAETGECIHTL 93 (342)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEEEE--CCC-CSSCEEEEEEETT--EEEEE-ETTSCEEEEETTTTEEEEEE
T ss_pred EEEEEECCCEEEEEeCCCeEEEEECCCCCEEEE--EeC-CCCCEEEEEeCCC--ccccc-eecccccccccccccceecc
Confidence 456788766688889999999999999887654 455 9999999999874 88888 99999999999998888888
Q ss_pred eecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCC
Q psy8285 248 RTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAK 326 (507)
Q Consensus 248 ~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~ 326 (507)
..+...+......+..+..+..|+.+.+|+..+.. ....+....... ..+.+....++.++ |+.|++||.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~i~~~d~~~~--- 167 (342)
T d2ovrb2 94 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ-CLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETE--- 167 (342)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCC-EEEEEECCSSCE--EEEEECSSCEEEEETTSCEEEEEGGGT---
T ss_pred cccceeEeeeecccccccccccceeEEEeeccccc-ceeeeecccccc--eeeccccceeeeecCCCeEEEeecccc---
Confidence 77888888888889999999999999999999876 333333333332 23344555666666 799999999987
Q ss_pred CCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCe
Q psy8285 327 RPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCS 405 (507)
Q Consensus 327 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~ 405 (507)
..+..+.+|...+..+.+ ++.. +++++. |+.|++||++.++++..+..+ ..+.+++++ +++|++ ++.|+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~--~~~~-l~s~~~--dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s--~s~d~~ 238 (342)
T d2ovrb2 168 TCLHTLQGHTNRVYSLQF--DGIH-VVSGSL--DTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVS--GNADST 238 (342)
T ss_dssp EEEEEECCCSSCEEEEEE--CSSE-EEEEET--TSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEE--EETTSC
T ss_pred eeeEEEcCcccccccccC--CCCE-EEEEeC--CCeEEEeecccceeeeEecccccceeEEecC--CCEEEE--EcCCCE
Confidence 777888888777766655 5544 445544 999999999999999888876 567777665 468888 789999
Q ss_pred EEEEeCCCccEEEEeec---cccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCccccee
Q psy8285 406 LKMWEYPRLHLIEELKI---HQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 406 i~v~d~~~~~~~~~~~~---~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 463 (507)
|++||+...+....+.. |...+.++.++ ++++++++.||.|++||+.+++.+..+.
T Consensus 239 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~ 297 (342)
T d2ovrb2 239 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLV 297 (342)
T ss_dssp EEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEe
Confidence 99999999888877765 45566666664 5699999999999999999998876654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=6.9e-29 Score=233.68 Aligned_cols=268 Identities=17% Similarity=0.218 Sum_probs=191.7
Q ss_pred ccceeeeeeCCCCEEEEEcCCeEEEEECCCCce----eEEEecCCCCCCceEEEEE------ccC-CCeEEEEeCCCCcE
Q psy8285 165 DFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKT----QLLVEYPTYDNAYISCVAW------KPR-TTDLAVTNTCTEYI 233 (507)
Q Consensus 165 ~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~----~~~~~~~~~~~~~v~~~~~------~~~-~~~l~~~~~~dg~i 233 (507)
...|.+++++++.+++++.|+.|++||....+. ........ +...+..+.. ++. +..++++ +.||.|
T Consensus 14 ~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~dg~v 91 (393)
T d1sq9a_ 14 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATT-SFSGDL 91 (393)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEE-ETTSCE
T ss_pred cCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeee-ccCCceEeeeEeeeccCCCCCcEEEEE-eCCCcE
Confidence 345778899888899999999999999765432 11111111 4443333322 111 2345556 899999
Q ss_pred EEEeCCCceeEE-----EE-----eecCccEEEEEe-------eCCEEEEEecCCeEEEEECCCCCcC------------
Q psy8285 234 DLWHEQEERLIQ-----KL-----RTHMHQVIAMCW-------NGNLLSCGTIGGNILHYDVRTHSDY------------ 284 (507)
Q Consensus 234 ~iwd~~~~~~~~-----~~-----~~~~~~v~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~------------ 284 (507)
++|++....... .. ..+...+..++| .+.++++++.||.+++|++......
T Consensus 92 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 171 (393)
T d1sq9a_ 92 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL 171 (393)
T ss_dssp EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEE
T ss_pred EEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccce
Confidence 999876432211 11 124455677776 2568999999999999998643210
Q ss_pred -----ceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCee------eecCCCCCeeEEEEccCCCcEE
Q psy8285 285 -----PTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQV------NNQCHLSAVKAIAWCPWEPTLL 352 (507)
Q Consensus 285 -----~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~ 352 (507)
......+...+.+++|+|++ +|++|+ |+.|++||++++ +++. .+.+|..+|++++|+|+++. +
T Consensus 172 ~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~---~~~~~~~~~~~l~~h~~~V~~l~~spdg~~-l 246 (393)
T d1sq9a_ 172 ELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL---RPLYNFESQHSMINNSNSIRSVKFSPQGSL-L 246 (393)
T ss_dssp EEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT---EEEEEEECCC---CCCCCEEEEEECSSTTE-E
T ss_pred ecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccc---ccccccccccccccccceEEEcccccccce-e
Confidence 01112344568899999997 788888 699999999876 3333 34568999999999999954 4
Q ss_pred EEEccCCCC---eEEEEeCCCCCeeeeee-------------cC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc
Q psy8285 353 ATGGGICDQ---TVRLWNSMNGKEKCHVK-------------TD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH 415 (507)
Q Consensus 353 ~~~~~~~d~---~i~i~d~~~~~~~~~~~-------------~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~ 415 (507)
++++. |+ .|++||+++++++..+. +| ..|++++|+|++++|++ ++.|+.|++||+++++
T Consensus 247 ~sgs~--D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S--~s~D~~v~vWd~~~g~ 322 (393)
T d1sq9a_ 247 AIAHD--SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS--AGWDGKLRFWDVKTKE 322 (393)
T ss_dssp EEEEE--ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE--EETTSEEEEEETTTTE
T ss_pred eeecC--CCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEE--ECCCCEEEEEECCCCC
Confidence 55543 65 59999999998887764 23 67999999999999999 8899999999999999
Q ss_pred EEEEeecccccee----EEEECCCCCEEEEEe
Q psy8285 416 LIEELKIHQERIL----SAVLSPDQTCVAAAS 443 (507)
Q Consensus 416 ~~~~~~~~~~~i~----~~~~s~~~~~l~s~~ 443 (507)
++.++.+|...|. .++|+|++..+++++
T Consensus 323 ~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 323 RITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred EEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence 9999999998875 478899988776544
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.7e-27 Score=214.01 Aligned_cols=268 Identities=14% Similarity=0.234 Sum_probs=207.2
Q ss_pred CcccccceeeeeeccCcceeeeccccccccceeeecccCCcceeeee-cCcccceeeccccccccccCCccCCceeEeec
Q psy8285 2 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVK-TDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 2 l~gH~~~V~~l~fsp~g~~llasg~~~~d~~i~iWd~~~g~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
+.+|...|+|++| ||++ ||||+ .|++|+|||+.+++++.++. |...|.+
T Consensus 11 ~~~~~~~V~c~~~--d~~~-l~sgs--~Dg~i~vWd~~~~~~~~~l~~H~~~V~~------------------------- 60 (293)
T d1p22a2 11 RSETSKGVYCLQY--DDQK-IVSGL--RDNTIKIWDKNTLECKRILTGHTGSVLC------------------------- 60 (293)
T ss_dssp CCSSCCCEEEEEC--CSSE-EEEEE--SSSCEEEEESSSCCEEEEECCCSSCEEE-------------------------
T ss_pred cCCCCCCEEEEEE--cCCE-EEEEe--CCCeEEEEECCCCcEEEEEecCCCCEee-------------------------
Confidence 3578899999765 6776 99998 89999999999999888776 4444433
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 61 -------------------------------------------------------------------------------- 60 (293)
T d1p22a2 61 -------------------------------------------------------------------------------- 60 (293)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCC
Q psy8285 161 SIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQE 240 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~ 240 (507)
++|+++.+++++.|+.|++|++..+........ .. .....+.+....++++ ..++.+.+|+..+
T Consensus 61 ----------v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 124 (293)
T d1p22a2 61 ----------LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIH---HC--EAVLHLRFNNGMMVTC-SKDRSIAVWDMAS 124 (293)
T ss_dssp ----------EECCSSEEEEEETTSCEEEEESSSCCEEEEECC---CC--SCEEEEECCTTEEEEE-ETTSCEEEEECSS
T ss_pred ----------eecccceeecccccccccccccccccccccccc---cc--cccccccccccceeec-ccccceeEeeccc
Confidence 344333477889999999999998876655543 22 2233455566678888 8999999999887
Q ss_pred cee---EEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEE
Q psy8285 241 ERL---IQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVK 316 (507)
Q Consensus 241 ~~~---~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~ 316 (507)
... ...+..|...+..+.+....+++++.|+.|++||+++.+ ....+.++...+..+.++ +.++++++ |+.|+
T Consensus 125 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~-~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~ 201 (293)
T d1p22a2 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCE-FVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIR 201 (293)
T ss_dssp SSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred cccccccccccccccccccceecccccccccCCCceeeecCCCCc-EEEEEcccccccccccCC--CCeEEEecCCCEEE
Confidence 643 445567889999999999999999999999999999876 566777888888887775 45788888 79999
Q ss_pred EEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC---------CCeeeeeecC-CCeEEE
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN---------GKEKCHVKTD-SQVTSI 386 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---------~~~~~~~~~~-~~i~~~ 386 (507)
+||+++. ..+.....+...+..+ ++++ .++++++. |+.|++||+.. ..++..+..| ..|+++
T Consensus 202 i~d~~~~---~~~~~~~~~~~~v~~~--~~~~-~~l~sg~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v 273 (293)
T d1p22a2 202 LWDIECG---ACLRVLEGHEELVRCI--RFDN-KRIVSGAY--DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 273 (293)
T ss_dssp EEETTTC---CEEEEECCCSSCEEEE--ECCS-SEEEEEET--TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred EEecccc---eeeeeecccceeeeec--cccc-eEEEEEcC--CCEEEEEECCCCccccccCCceeeEEecCCCCCEEEE
Confidence 9999987 7788888888887654 4455 45555554 99999999753 2345666666 679999
Q ss_pred EECCCCCeEEEEeccCCCeEEEEe
Q psy8285 387 LWSEQYRELVTSHGKQDCSLKMWE 410 (507)
Q Consensus 387 ~~s~~~~~l~~~~g~~d~~i~v~d 410 (507)
+|+ +++|++ ++.||.|++||
T Consensus 274 ~~d--~~~l~s--~s~Dg~i~iWD 293 (293)
T d1p22a2 274 QFD--EFQIVS--SSHDDTILIWD 293 (293)
T ss_dssp EEC--SSCEEE--CCSSSEEEEEC
T ss_pred EEc--CCEEEE--EecCCEEEEeC
Confidence 984 578888 88999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.3e-28 Score=226.49 Aligned_cols=284 Identities=15% Similarity=0.089 Sum_probs=210.2
Q ss_pred cceeeeeeCCCC--EEEEEcCCeEEEEECCCCce-eEEEecCCCCCCceEEEEEccCCC-eEEEEeCCCCcEEEEeCCCc
Q psy8285 166 FYTSGLDWGYHD--TLAVALDTSVYTWNTKTNKT-QLLVEYPTYDNAYISCVAWKPRTT-DLAVTNTCTEYIDLWHEQEE 241 (507)
Q Consensus 166 ~~i~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~~dg~i~iwd~~~~ 241 (507)
-.|++|+|+|++ +++++.|+.|+|||+..+.. .......+ |..+|.+++|+|++. +|+++ +.||.|++|++...
T Consensus 12 d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~-h~~~V~~v~f~~~~~~~l~sg-~~d~~v~~w~~~~~ 89 (342)
T d1yfqa_ 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVG-TVQGEILKVDLIGS 89 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEE-ETTSCEEEECSSSS
T ss_pred CCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecC-CCCCEEEEEEeCCCCCEEEEc-ccccceeeeecccc
Confidence 368999999987 66677999999999876543 22333334 899999999999765 56666 89999999999988
Q ss_pred eeEEEEeecCccEEEEE-e--eCCEEEEEecCCeEEEEECCCCCcCceeee---c--CCCceEEEEEcCCCCEEEEEe-C
Q psy8285 242 RLIQKLRTHMHQVIAMC-W--NGNLLSCGTIGGNILHYDVRTHSDYPTAIT---R--EGDVVCGLKWSPNGRYLASGS-N 312 (507)
Q Consensus 242 ~~~~~~~~~~~~v~~~~-~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~--~~~~v~~~~~~~~~~~l~~~~-d 312 (507)
........+........ + +...+++++.++.+++||++.......... . .......+.+.+++..+++++ |
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 169 (342)
T d1yfqa_ 90 PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNN 169 (342)
T ss_dssp SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEEST
T ss_pred cccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCC
Confidence 77776665444332222 2 688999999999999999876542222221 1 122344567778888899888 6
Q ss_pred CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee------ee---------
Q psy8285 313 NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC------HV--------- 377 (507)
Q Consensus 313 ~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~------~~--------- 377 (507)
+.|++||++.............+...+.+..+.+.....+++++. |+.+.+|+........ .+
T Consensus 170 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (342)
T d1yfqa_ 170 SQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI--DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKD 247 (342)
T ss_dssp TEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET--TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTC
T ss_pred CcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC--CCeEEEEEecCCcceeeccccceeeeeeeccCC
Confidence 999999998875444555555566677777777766566666664 9999999986543211 11
Q ss_pred e-cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q psy8285 378 K-TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPR 456 (507)
Q Consensus 378 ~-~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 456 (507)
. +...+.+++|+|++++|++ |+.||.|++||+.+++++..+..+ ..+..++|+|++++|++++.|+.+++|.....
T Consensus 248 ~~~~~~v~~l~~sp~~~~las--g~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~~ 324 (342)
T d1yfqa_ 248 TNLAYPVNSIEFSPRHKFLYT--AGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAIDQ 324 (342)
T ss_dssp CSSCCCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSSSCT
T ss_pred CcccccceeEEecCCccEEEE--ECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeeeeCC
Confidence 1 1146899999999999999 889999999999999999888643 34456788889999999999999888876544
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=5.6e-28 Score=227.40 Aligned_cols=251 Identities=15% Similarity=0.209 Sum_probs=187.8
Q ss_pred cCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce------eEEEEeecCccEEEEEe---------eCCEEEEE
Q psy8285 203 YPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER------LIQKLRTHMHQVIAMCW---------NGNLLSCG 267 (507)
Q Consensus 203 ~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~v~~~~~---------~~~~l~~~ 267 (507)
.++ |...|.++++++ ++++++ +.|++|+|||..+.+ .......|...+..+.. +..+++++
T Consensus 10 ~~~-H~~~I~~v~~~~--~~l~S~-S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 10 GKA-HDADIFSVSACN--SFTVSC-SGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp SSC-SSSCEEEEEECS--SEEEEE-ETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred CCc-ccCccEEEEEeC--CEEEEE-ECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 345 999999999874 689998 899999999976542 22233334444433332 24578899
Q ss_pred ecCCeEEEEECCCCCcCceee---------ecCCCceEEEEEcCC-----CCEEEEEe-CCcEEEEEcCCCCC-------
Q psy8285 268 TIGGNILHYDVRTHSDYPTAI---------TREGDVVCGLKWSPN-----GRYLASGS-NNTVKIWDFRQLDA------- 325 (507)
Q Consensus 268 ~~dg~i~i~d~~~~~~~~~~~---------~~~~~~v~~~~~~~~-----~~~l~~~~-d~~i~i~d~~~~~~------- 325 (507)
+.||.|++|++.......... ..+...+..++|.++ +.++++++ |+.+++|++.....
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence 999999999987544221111 123445777888775 35677777 79999999864310
Q ss_pred -CC-------CeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec------C-CCeEEEEECC
Q psy8285 326 -KR-------PQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT------D-SQVTSILWSE 390 (507)
Q Consensus 326 -~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~-~~i~~~~~s~ 390 (507)
.. .......+...+.+++|+|++ ++++++. |++|++||+.+++++..+.. | ..|.+++|+|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~--Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 241 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFN--NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP 241 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECT--TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred eeccceecccceecccCCCCcEEEEEECCCC--EEEEEeC--CCcEEEEeecccccccccccccccccccceEEEccccc
Confidence 00 111223355668999999987 6667765 99999999999988766542 3 6799999999
Q ss_pred CCCeEEEEeccCCC---eEEEEeCCCccEEEEee-------------ccccceeEEEECCCCCEEEEEeCCCcEEEEecC
Q psy8285 391 QYRELVTSHGKQDC---SLKMWEYPRLHLIEELK-------------IHQERILSAVLSPDQTCVAAASADETISIWNCF 454 (507)
Q Consensus 391 ~~~~l~~~~g~~d~---~i~v~d~~~~~~~~~~~-------------~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~ 454 (507)
+|++|++ |+.|+ .|++||+.+++.+..+. +|...|++++|+|++++|++++.|++|++||+.
T Consensus 242 dg~~l~s--gs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~ 319 (393)
T d1sq9a_ 242 QGSLLAI--AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 319 (393)
T ss_dssp STTEEEE--EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred ccceeee--ecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC
Confidence 9999999 77776 59999999998887764 799999999999999999999999999999999
Q ss_pred CCCccccee
Q psy8285 455 PRDKKRKAR 463 (507)
Q Consensus 455 ~~~~~~~~~ 463 (507)
+++.+..+.
T Consensus 320 ~g~~~~~l~ 328 (393)
T d1sq9a_ 320 TKERITTLN 328 (393)
T ss_dssp TTEEEEEEE
T ss_pred CCCEEEEEC
Confidence 998877664
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=7.6e-28 Score=228.86 Aligned_cols=289 Identities=10% Similarity=0.042 Sum_probs=199.4
Q ss_pred eeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecC---CCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 171 LDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYP---TYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 171 ~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
++||||| +++++.|+.|++||+.+++.....+++ + |...+.+++|+|||+++++++..++.+++||..+++.+.
T Consensus 67 vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~-~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~ 145 (426)
T d1hzua2 67 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE-ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQ 145 (426)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCC-CcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeE
Confidence 3344444 455678999999999998765544432 3 555667778889999988775789999999999998888
Q ss_pred EEeecCccE-----------EEEEe--eCCEEEEEe-cCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe
Q psy8285 246 KLRTHMHQV-----------IAMCW--NGNLLSCGT-IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS 311 (507)
Q Consensus 246 ~~~~~~~~v-----------~~~~~--~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 311 (507)
.+..+...+ ..+.+ ++..++... ..+.+.+++.............+...+..+.|+|++++++++.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~ 225 (426)
T d1hzua2 146 IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAA 225 (426)
T ss_dssp EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEE
T ss_pred EeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeee
Confidence 776554433 22333 344443333 2345556665554433444556778899999999999998887
Q ss_pred -C-CcEEEEEcCCCCCCCCeeeecC--CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCC-------CeeeeeecC
Q psy8285 312 -N-NTVKIWDFRQLDAKRPQVNNQC--HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNG-------KEKCHVKTD 380 (507)
Q Consensus 312 -d-~~i~i~d~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-------~~~~~~~~~ 380 (507)
+ ..+.+++..++ +....... +........+.+.+...+.......|+.+.+|+.... +....+..+
T Consensus 226 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~ 302 (426)
T d1hzua2 226 NNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ 302 (426)
T ss_dssp TTCSEEEEEETTTT---EEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred ecccceeeeecccc---cEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecC
Confidence 4 88999999886 44433322 2223334444444433333322234888888886543 666777776
Q ss_pred -CCeEEEEECCCCCeEEEE-----eccCCCeEEEEeCCCccEEEEee---------ccccceeEEEECCCCCEEEE-E--
Q psy8285 381 -SQVTSILWSEQYRELVTS-----HGKQDCSLKMWEYPRLHLIEELK---------IHQERILSAVLSPDQTCVAA-A-- 442 (507)
Q Consensus 381 -~~i~~~~~s~~~~~l~~~-----~g~~d~~i~v~d~~~~~~~~~~~---------~~~~~i~~~~~s~~~~~l~s-~-- 442 (507)
..+..++|+|++++|++. ++..+++|+|||+.+++...++. .|...|.+++|||||++++. +
T Consensus 303 ~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~ 382 (426)
T d1hzua2 303 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWN 382 (426)
T ss_dssp SSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECC
T ss_pred CCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEec
Confidence 568999999999999963 14567899999999987765542 35567999999999997743 2
Q ss_pred --eCCCcEEEEecCCCCccccee
Q psy8285 443 --SADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 443 --~~dg~i~iw~~~~~~~~~~~~ 463 (507)
+.+|.|+|||..+.+....+.
T Consensus 383 ~~~~~~~i~v~D~~T~k~~~~i~ 405 (426)
T d1hzua2 383 GKNDSSALVVVDDKTLKLKAVVK 405 (426)
T ss_dssp CTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCCCCeEEEEECCCCeEEEEEC
Confidence 357889999999988766543
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2e-27 Score=218.46 Aligned_cols=266 Identities=14% Similarity=0.117 Sum_probs=191.9
Q ss_pred CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE---EEEeecCccEEEEEe---eCCEEEEEecCCeEEEEECCC
Q psy8285 207 DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI---QKLRTHMHQVIAMCW---NGNLLSCGTIGGNILHYDVRT 280 (507)
Q Consensus 207 ~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~ 280 (507)
|.+.|++|+|+|++++|+++ +.||+|+|||+.++... ....+|..+|.+++| ++.+|++|+.|+.|++|++..
T Consensus 10 h~d~I~~l~fsp~~~~L~s~-s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~ 88 (342)
T d1yfqa_ 10 PKDYISDIKIIPSKSLLLIT-SWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEE-ETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCEEEEEEeCCCCEEEEE-ECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccc
Confidence 99999999999999999999 99999999998765432 333469999999999 255899999999999999988
Q ss_pred CCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCe-eeecC--CCCCeeEEEEccCCCcEEEEEc
Q psy8285 281 HSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQ-VNNQC--HLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 281 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~-~~~~~--~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
..........+........+.++...+++++ ++.+++||++........ ..... .......+.+.+.+..++..+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (342)
T d1yfqa_ 89 SPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMN 168 (342)
T ss_dssp SSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEES
T ss_pred ccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecC
Confidence 7643333334444455666777888888888 699999999765221111 11111 1223455667777755555443
Q ss_pred cCCCCeEEEEeCCCCCeeeeee----cCCCeEEEEECC-CCCeEEEEeccCCCeEEEEeCCCccE---------EE----
Q psy8285 357 GICDQTVRLWNSMNGKEKCHVK----TDSQVTSILWSE-QYRELVTSHGKQDCSLKMWEYPRLHL---------IE---- 418 (507)
Q Consensus 357 ~~~d~~i~i~d~~~~~~~~~~~----~~~~i~~~~~s~-~~~~l~~~~g~~d~~i~v~d~~~~~~---------~~---- 418 (507)
|+.|++||++..+...... ......+..+.+ ++..+++ ++.||.+.+|+...... ..
T Consensus 169 ---d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T d1yfqa_ 169 ---NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC--SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243 (342)
T ss_dssp ---TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEE--EETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred ---CCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEe--ecCCCeEEEEEecCCcceeeccccceeeeeee
Confidence 9999999998776543322 224455555554 5566666 78999999999754321 11
Q ss_pred --EeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecCCCcceEEeeccC
Q psy8285 419 --ELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSGSSLEFAILKQ 478 (507)
Q Consensus 419 --~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (507)
....|...|++++|+|++++|++|+.||.|++||+.+++.+..+........+.++++..
T Consensus 244 ~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~ 305 (342)
T d1yfqa_ 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN 305 (342)
T ss_dssp CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSS
T ss_pred ccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCC
Confidence 113466789999999999999999999999999999988877766555555666666544
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.96 E-value=2.5e-25 Score=201.02 Aligned_cols=272 Identities=13% Similarity=0.133 Sum_probs=218.3
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAM 257 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 257 (507)
+++.+.++.|.+||+++++....+.. ...+..++|+|+|++|++++..++.|++||+.+++.+..+..+.. +..+
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~----g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~ 79 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPV----GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGV 79 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEE
T ss_pred EEEECCCCEEEEEECCCCeEEEEEEC----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-cccc
Confidence 34556889999999999998877764 345789999999999876657899999999999999998887654 5777
Q ss_pred Ee--eCC-EEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--CCcEEEEEcCCCCCCCCeeee
Q psy8285 258 CW--NGN-LLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--NNTVKIWDFRQLDAKRPQVNN 332 (507)
Q Consensus 258 ~~--~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~~~~ 332 (507)
.| ++. .++++..++.+.+|+..+.+ ....+ .+.....++.|+|+++.++... ++.+.+|+..+. .....+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 154 (301)
T d1l0qa2 80 AVSPDGKQVYVTNMASSTLSVIDTTSNT-VAGTV-KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK---AVINTV 154 (301)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTE-EEEEE-ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEE
T ss_pred ccccccccccccccccceeeecccccce-eeeec-cccccceEEEeecCCCeeeeeeccccceeeeecccc---ceeeec
Confidence 78 555 45556677889999998865 33333 3455678899999999887766 488999999886 555555
Q ss_pred cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEe-ccCCCeEEEEeC
Q psy8285 333 QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSH-GKQDCSLKMWEY 411 (507)
Q Consensus 333 ~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-g~~d~~i~v~d~ 411 (507)
. +...+..+.++|++..++++..+ ++.+.+|+....+....+.....+..++++++++.++++. +..++.|++||.
T Consensus 155 ~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~ 231 (301)
T d1l0qa2 155 S-VGRSPKGIAVTPDGTKVYVANFD--SMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (301)
T ss_dssp E-CCSSEEEEEECTTSSEEEEEETT--TTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred c-cCCCceEEEeeccccceeeeccc--ccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeec
Confidence 5 44568899999999888877764 7889999988888888887778889999999999987642 344578999999
Q ss_pred CCccEEEEeeccccceeEEEECCCCCEE-EEEeCCCcEEEEecCCCCccccee
Q psy8285 412 PRLHLIEELKIHQERILSAVLSPDQTCV-AAASADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 412 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~ 463 (507)
.+++.+..+..+ ..+.+++|+|||++| ++++.|+.|++||+.+++.+..++
T Consensus 232 ~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 232 GTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp TTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 999998888754 457999999999987 577789999999999988776654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=5.3e-27 Score=210.73 Aligned_cols=249 Identities=13% Similarity=0.076 Sum_probs=193.7
Q ss_pred eEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe-eCCEEEEEecCCeEEEE
Q psy8285 198 QLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW-NGNLLSCGTIGGNILHY 276 (507)
Q Consensus 198 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~ 276 (507)
..+..+.| |..+|++++|+| |+++ +.||+|++||+.++. ..|...|.++.+ ++..+++++.|+++++|
T Consensus 4 ~~i~~l~g-H~~~I~~l~~s~----l~sg-s~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w 72 (287)
T d1pgua2 4 EVLKTISG-HNKGITALTVNP----LISG-SYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQEYSSISWDDTLKVN 72 (287)
T ss_dssp EEEEEECC-CSSCEEEEETTT----TEEE-ETTSCEEETTTTEEE-----CCCCSCEEEEECCSTTCCEEEETTTEEEET
T ss_pred ceeEEECC-CCCceEEEEECc----EEEE-eCCCeEEEEECCCCC-----CCCCCCEEEEEecCCCeEEEEeeccccccc
Confidence 34556777 999999999987 7888 999999999987643 579999999999 67788999999999999
Q ss_pred ECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEc
Q psy8285 277 DVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 277 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
++...+ ....+.++++++++..++++.++.+.+|+...+ ..+..+. +...+ .+++|++..+++.+.
T Consensus 73 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~--~~~~~~~~~~~v~~~ 138 (287)
T d1pgua2 73 GITKHE--------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTG---DIIKSVR-LNSPG--SAVSLSQNYVAVGLE 138 (287)
T ss_dssp TEEEEE--------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTC---CEEEEEE-CSSCE--EEEEECSSEEEEEET
T ss_pred cccccc--------cccceeeeeeccCCceEEEeecccceeeeccce---eeeeecc-cccee--eeeeccCcceeeecc
Confidence 876432 234577889999998888888888999998886 5555554 33333 456677766666655
Q ss_pred cCCCCeEEEEeCCCCCeeeeeec--CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEE-EeeccccceeEEEEC
Q psy8285 357 GICDQTVRLWNSMNGKEKCHVKT--DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIE-ELKIHQERILSAVLS 433 (507)
Q Consensus 357 ~~~d~~i~i~d~~~~~~~~~~~~--~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~-~~~~~~~~i~~~~~s 433 (507)
. ++.+++|++...+....+.. ...+++++|+|++++|++ |+.||.|++||+.+++... .+.+|..+|.+++|+
T Consensus 139 ~--~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~ 214 (287)
T d1pgua2 139 E--GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA--GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWK 214 (287)
T ss_dssp T--TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEECCSCCCSSCEEEEEEC
T ss_pred c--cceeeeeeccccceeeeeeeccCCceeEEEeccCcccccc--ccccccccceeecccccccccccccccccceeeec
Confidence 2 56899999987766555543 367999999999999999 8899999999999987765 467899999999998
Q ss_pred CC----------CCEEEEEeCCCcEEEEecCCCCcccc-e-eecCCCcceEEee
Q psy8285 434 PD----------QTCVAAASADETISIWNCFPRDKKRK-A-RQVGSGSSLEFAI 475 (507)
Q Consensus 434 ~~----------~~~l~s~~~dg~i~iw~~~~~~~~~~-~-~~~~~~~~~~~~~ 475 (507)
|+ +.+|++|+.|+.|++|++..+..... . .+...+..+.|.+
T Consensus 215 p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~ 268 (287)
T d1pgua2 215 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET 268 (287)
T ss_dssp CCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE
T ss_pred ccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC
Confidence 74 46899999999999999976443322 2 2344455566654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.94 E-value=5.6e-24 Score=191.96 Aligned_cols=240 Identities=13% Similarity=0.089 Sum_probs=186.9
Q ss_pred eeeCCCC--EE-EEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE
Q psy8285 171 LDWGYHD--TL-AVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 171 ~~~s~~~--~~-~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~ 247 (507)
++++||+ ++ +...++.|++||+.+++....+.. ...+..+.|++++..+++++..++.+.+|+..+++....+
T Consensus 37 va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (301)
T d1l0qa2 37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA----GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV 112 (301)
T ss_dssp EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec----cccccccccccccccccccccccceeeecccccceeeeec
Confidence 4455655 33 334788999999999987766653 3457899999999988877688889999999999888887
Q ss_pred eecCccEEEEEe--eCCEE-EEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-C-CcEEEEEcCC
Q psy8285 248 RTHMHQVIAMCW--NGNLL-SCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-N-NTVKIWDFRQ 322 (507)
Q Consensus 248 ~~~~~~v~~~~~--~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~ 322 (507)
..+. ...++.+ ++..+ +++..++.+.+|+..+.. ....+ .+...+..+.++|+++.++++. + +.+.+|+...
T Consensus 113 ~~~~-~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (301)
T d1l0qa2 113 KTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-VINTV-SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT 189 (301)
T ss_dssp ECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEE-ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred cccc-cceEEEeecCCCeeeeeeccccceeeeeccccc-eeeec-ccCCCceEEEeeccccceeeecccccccccccccc
Confidence 7554 5566777 66665 455667889999998865 23333 3445678899999999988887 5 7788888776
Q ss_pred CCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccC
Q psy8285 323 LDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQ 402 (507)
Q Consensus 323 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~ 402 (507)
. ....... ....+..+++++++..++++..+..++.|++||+.+++.+..+..+..+..++|+|||++|+++ +..
T Consensus 190 ~---~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va-~~~ 264 (301)
T d1l0qa2 190 N---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVA-LSF 264 (301)
T ss_dssp T---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEE-ETT
T ss_pred e---eeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEE-ECC
Confidence 4 3434433 4566788999999988877765445689999999999999988888889999999999988654 678
Q ss_pred CCeEEEEeCCCccEEEEeec
Q psy8285 403 DCSLKMWEYPRLHLIEELKI 422 (507)
Q Consensus 403 d~~i~v~d~~~~~~~~~~~~ 422 (507)
++.|++||+.+++.+.++..
T Consensus 265 ~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 265 CNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp TTEEEEEETTTTEEEEEEEC
T ss_pred CCeEEEEECCCCeEEEEEeC
Confidence 99999999999999888864
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.94 E-value=4.6e-26 Score=215.89 Aligned_cols=281 Identities=11% Similarity=0.006 Sum_probs=183.5
Q ss_pred eeeCCCC--EEEEEcCCeEEEEECCCCceeEEEec---CCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 171 LDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEY---PTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 171 ~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
++||||+ +++++.|+.|++||+.+++.....++ .+ |...+.+..|+|||++|+++++.++.|++||..+++.+.
T Consensus 67 v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~-~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~ 145 (432)
T d1qksa2 67 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKK 145 (432)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEE
T ss_pred EEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCC-CCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccccee
Confidence 3344444 44556899999999988775443332 22 455566677888999987665889999999999999888
Q ss_pred EEeec-----------CccEEEEEe--eCCE-EEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe
Q psy8285 246 KLRTH-----------MHQVIAMCW--NGNL-LSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS 311 (507)
Q Consensus 246 ~~~~~-----------~~~v~~~~~--~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 311 (507)
.+..+ ......+.+ ++.. +++...++.|.+||..+.+........+...+..++|+|||+++++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~ 225 (432)
T d1qksa2 146 IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAA 225 (432)
T ss_dssp EEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEE
T ss_pred eeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEec
Confidence 76643 334556666 5555 456667799999999876533333335567789999999999988888
Q ss_pred -C-CcEEEEEcCCCCCCCCeeeec-----CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC-------eeeee
Q psy8285 312 -N-NTVKIWDFRQLDAKRPQVNNQ-----CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK-------EKCHV 377 (507)
Q Consensus 312 -d-~~i~i~d~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-------~~~~~ 377 (507)
+ +.+.++|.... +...... .|........+...+ .+..+.. ..++.+.+|+..... ....+
T Consensus 226 ~~~~~v~v~d~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~g-~~~~~~~-lg~~~v~~~~~~~~~~~~~~~~v~~~~ 300 (432)
T d1qksa2 226 NARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGANFVHPTFG-PVWATSH-MGDDSVALIGTDPEGHPDNAWKILDSF 300 (432)
T ss_dssp GGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEEEEETTTE-EEEEEEB-SSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred cccceEEEeecccc---eEEEEeccCccccccCcccceecCCCC-ceecccc-cCCceEEecccccccccccccEEEEEE
Confidence 4 89999999875 3332221 133334444444444 2333321 127788888765432 11122
Q ss_pred ecC-CC-------------------------eEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEE
Q psy8285 378 KTD-SQ-------------------------VTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 431 (507)
Q Consensus 378 ~~~-~~-------------------------i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~ 431 (507)
..+ +. ..++++ ||++.+++ ++.|+.+++|++.++.. +..|...+.+++
T Consensus 301 ~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~--~s~d~~~k~w~~~~~~~---l~~~~~~v~~~~ 374 (432)
T d1qksa2 301 PALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTG--DGSDPEFKTLPIAEWAG---ITEGQPRVVQGE 374 (432)
T ss_dssp ECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCC--SSSCCCEEEECHHHHHT---CCSSCCEEEEEE
T ss_pred EcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-Eechhhcc--cccCCceEecccccccc---cCCCCCcEEEeE
Confidence 111 00 112332 66666666 67778888887654432 235677899999
Q ss_pred ECCCCCEEEEEe-----CCCcEEEEecCCCCccccee
Q psy8285 432 LSPDQTCVAAAS-----ADETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 432 ~s~~~~~l~s~~-----~dg~i~iw~~~~~~~~~~~~ 463 (507)
|||||++++.+. .+|.|.|||..+.+....++
T Consensus 375 fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~ 411 (432)
T d1qksa2 375 FNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 411 (432)
T ss_dssp ECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred ECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeEec
Confidence 999999886553 46889999999998765543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=6.2e-26 Score=210.53 Aligned_cols=244 Identities=9% Similarity=-0.013 Sum_probs=171.0
Q ss_pred eeeeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEe---------CCCCcEEEEe
Q psy8285 169 SGLDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTN---------TCTEYIDLWH 237 (507)
Q Consensus 169 ~~~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~~dg~i~iwd 237 (507)
.+++|+|++ +++++.++.+++|+..+++....... +...+.+++|+|+|++|+.+. ..++.+++||
T Consensus 89 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d 165 (360)
T d1k32a3 89 FAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS---REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 165 (360)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred Eeeeecccccccceeccccccccccccccceeeeeec---ccccccchhhccceeeeeeeccccccceeeccccceeeec
Confidence 356677776 66677999999999999887766655 778899999999999998651 3455799999
Q ss_pred CCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcC------ceeeecCCCceEEEEEcCCCCEEEE
Q psy8285 238 EQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDY------PTAITREGDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~ 309 (507)
+.+++.... ..+...+..+.| +++.|++++.++.+.+|+....... ......+...+..+.|++++..+++
T Consensus 166 ~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 244 (360)
T d1k32a3 166 MEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244 (360)
T ss_dssp TTTTEEEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCC
T ss_pred cccCceeee-cccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccc
Confidence 998766543 446667777788 7999999999999999997654311 1122234444445566777766655
Q ss_pred Ee-C-----CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCc--EEEEEccCCCCeEEEEeCCCCCeeeeeecCC
Q psy8285 310 GS-N-----NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPT--LLATGGGICDQTVRLWNSMNGKEKCHVKTDS 381 (507)
Q Consensus 310 ~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~ 381 (507)
+. + ..+..++...+ ....+..+.+.+..+.+.+.+.. +++++. .++.+++||+.+++..... .
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~d~~~~~~~~~~---~ 315 (360)
T d1k32a3 245 GEYDLNDMYKRSSPINVDPG----DYRMIIPLESSILIYSVPVHGEFAAYYQGAP--EKGVLLKYDVKTRKVTEVK---N 315 (360)
T ss_dssp CCCCCTTGGGGCEECSCCCB----CEEEEEECSSEEEEEECCCCCSHHHHHHCCC--CCEEEEEEETTTCCEEEEE---E
T ss_pred cceeecccccceeecccCcC----ceeEeeecCCCceEEEEEecCCCeeEEEecC--CCCEEEEEECCCCeEEEec---C
Confidence 43 2 12333333332 23334445566666666665543 333333 4899999999887653322 4
Q ss_pred CeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccce
Q psy8285 382 QVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERI 427 (507)
Q Consensus 382 ~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i 427 (507)
.+.+++|+|||++|++ ++.||.|++||+.+++...++..+..++
T Consensus 316 ~v~~~~~SpDG~~l~~--~~~Dg~i~v~d~~~~~~~~~~~~d~~~~ 359 (360)
T d1k32a3 316 NLTDLRLSADRKTVMV--RKDDGKIYTFPLEKPEDERTVETDKRPL 359 (360)
T ss_dssp EEEEEEECTTSCEEEE--EETTSCEEEEESSCTTSCEECCCCSSCE
T ss_pred CcCEEEECCCCCEEEE--EECCCeEEEEECCCCCcceEEEeccccc
Confidence 5899999999999999 7889999999999998888776655543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.92 E-value=2.7e-23 Score=190.62 Aligned_cols=275 Identities=12% Similarity=0.034 Sum_probs=202.5
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCcc----
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQ---- 253 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---- 253 (507)
+++++.|++|++||+++++....+..+. +...+.+++|+|||++++++++.++.|.+||+.+++.+..+..+...
T Consensus 4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~-~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~ 82 (337)
T d1pbyb_ 4 ILAPARPDKLVVIDTEKMAVDKVITIAD-AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEEECTT-CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEcCCCEEEEEECCCCeEEEEEECCC-CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccc
Confidence 7788899999999999999888887765 55678899999999998766588999999999999998888765433
Q ss_pred -EEEEEe--eCCEEEEEe------------cCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEE
Q psy8285 254 -VIAMCW--NGNLLSCGT------------IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIW 318 (507)
Q Consensus 254 -v~~~~~--~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~ 318 (507)
+..++| +++.++++. .+..+.+||..+.. ....+. +...+..++|+|||+++++++ +.+.+|
T Consensus 83 ~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~~-~~~~~~ 159 (337)
T d1pbyb_ 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS-RRKAFE-APRQITMLAWARDGSKLYGLG-RDLHVM 159 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE-EEEEEE-CCSSCCCEEECTTSSCEEEES-SSEEEE
T ss_pred ceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCe-EEEecc-ccCCceEEEEcCCCCEEEEEc-CCccee
Confidence 234555 678887765 35678899998875 333333 455678899999999998876 457789
Q ss_pred EcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEE-------------EEE--------ccCCCCeEEEEeCCCCCeeeee
Q psy8285 319 DFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLL-------------ATG--------GGICDQTVRLWNSMNGKEKCHV 377 (507)
Q Consensus 319 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------------~~~--------~~~~d~~i~i~d~~~~~~~~~~ 377 (507)
|...+ +....+..+.. .....+.|++..+. ... ....++.+.+||..+++.....
T Consensus 160 d~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (337)
T d1pbyb_ 160 DPEAG---TLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235 (337)
T ss_dssp ETTTT---EEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEE
T ss_pred eeecC---cEEEEeecCCc-cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEE
Confidence 98776 33333322111 11111111111100 000 0112567999999988765532
Q ss_pred -ec-CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 378 -KT-DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 378 -~~-~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
.. ...+..+.++|++.+++. . ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.|+.|++||+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~--~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t 310 (337)
T d1pbyb_ 236 VRIMDVFYFSTAVNPAKTRAFG--A--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEE--E--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred ecCCCcceEEEEecccceEEEE--c--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 22 357888999999999887 3 6899999999999998886 566789999999999999999999999999999
Q ss_pred CCcccceeec
Q psy8285 456 RDKKRKARQV 465 (507)
Q Consensus 456 ~~~~~~~~~~ 465 (507)
.+.+..++..
T Consensus 311 ~~~v~~i~~~ 320 (337)
T d1pbyb_ 311 LEKKGQVDLP 320 (337)
T ss_dssp CCEEEEEECG
T ss_pred CcEEEEEECC
Confidence 9888776543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.92 E-value=9.2e-23 Score=193.45 Aligned_cols=292 Identities=10% Similarity=0.042 Sum_probs=208.4
Q ss_pred EEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE--e---ecCcc
Q psy8285 179 LAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL--R---THMHQ 253 (507)
Q Consensus 179 ~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~--~---~~~~~ 253 (507)
++...|+.|++||+.+++....+.. + ..+..++|+|||++++++ +.|++|++||+.+++..... . +|...
T Consensus 36 V~~~~dg~v~vwD~~t~~~~~~l~~---g-~~~~~vafSPDGk~l~~~-~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~ 110 (426)
T d1hzua2 36 VTLRDAGQIALVDGDSKKIVKVIDT---G-YAVHISRMSASGRYLLVI-GRDARIDMIDLWAKEPTKVAEIKIGIEARSV 110 (426)
T ss_dssp EEETTTTEEEEEETTTCSEEEEEEC---C-SSEEEEEECTTSCEEEEE-ETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred EEEcCCCEEEEEECCCCcEEEEEeC---C-CCeeEEEECCCCCEEEEE-eCCCCEEEEEccCCceeEEEEEeCCCCCcce
Confidence 3345789999999999998877763 3 468999999999999998 89999999999988754432 2 35555
Q ss_pred EEEEEe--eCCEEE-EEecCCeEEEEECCCCCcCceeeec-----------CCCceEEEEEcCCCCEEEEEe-C-CcEEE
Q psy8285 254 VIAMCW--NGNLLS-CGTIGGNILHYDVRTHSDYPTAITR-----------EGDVVCGLKWSPNGRYLASGS-N-NTVKI 317 (507)
Q Consensus 254 v~~~~~--~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~-d-~~i~i 317 (507)
+.+++| ||++++ ++..++.+.+||..+.. ....... +......+.+++++..++... + +.+.+
T Consensus 111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~ 189 (426)
T d1hzua2 111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE-PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL 189 (426)
T ss_dssp EECCSTTCTTTEEEEEEEESSEEEEEETTTCC-EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred EEeeeecCCCCEEEEeecCCCeEEEEcCCccc-eeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 556666 788764 55588999999999875 3333322 334456677888888877766 4 77777
Q ss_pred EEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECCC-CC
Q psy8285 318 WDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSEQ-YR 393 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~~-~~ 393 (507)
++..... ........+...+..+.|+|++++++++... +..+.+++..+++.+...... .......+.+. ..
T Consensus 190 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (426)
T d1hzua2 190 VNYKDID--NLTVTSIGAAPFLADGGWDSSHRYFMTAANN--SNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYG 265 (426)
T ss_dssp EECSSSS--SCEEEEEECCSSEEEEEECTTSCEEEEEETT--CSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTE
T ss_pred EEecccc--ceeeEEeccCCccEeeeECCCCcEEEeeeec--ccceeeeecccccEEEEeccCCcccccceeeeecCCCC
Confidence 7766541 2233344577889999999999888887765 889999999999988776543 12222333222 22
Q ss_pred eEEEEeccCCCeEEEEeCCC-------ccEEEEeeccccceeEEEECCCCCEEEE-------EeCCCcEEEEecCCCCcc
Q psy8285 394 ELVTSHGKQDCSLKMWEYPR-------LHLIEELKIHQERILSAVLSPDQTCVAA-------ASADETISIWNCFPRDKK 459 (507)
Q Consensus 394 ~l~~~~g~~d~~i~v~d~~~-------~~~~~~~~~~~~~i~~~~~s~~~~~l~s-------~~~dg~i~iw~~~~~~~~ 459 (507)
.+.......|+.+.+|+... ++....+.+|...+..++|+||+++|++ ++.|++|++||+.+++..
T Consensus 266 ~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~ 345 (426)
T d1hzua2 266 PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 345 (426)
T ss_dssp EEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred ceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcC
Confidence 22222256688888888654 4778889999999999999999999994 456789999999998876
Q ss_pred cceee----------cCCCcceEEeeccCcc
Q psy8285 460 RKARQ----------VGSGSSLEFAILKQPV 480 (507)
Q Consensus 460 ~~~~~----------~~~~~~~~~~~~~~~~ 480 (507)
..... ...+..++|+++...+
T Consensus 346 ~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i 376 (426)
T d1hzua2 346 YQVLPIAEWADLGEGAKRVVQPEYNKRGDEV 376 (426)
T ss_dssp CEEECHHHHHCCCSSCCCEEEEEECSSSSEE
T ss_pred eEEeccchhcccCCCCccEEEEEECCCCCEE
Confidence 55421 1223455677776543
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.91 E-value=2.5e-22 Score=184.75 Aligned_cols=285 Identities=8% Similarity=-0.023 Sum_probs=205.3
Q ss_pred eeeCCCC--EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe
Q psy8285 171 LDWGYHD--TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR 248 (507)
Q Consensus 171 ~~~s~~~--~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~ 248 (507)
+++++++ +++++.++.|.+||+.+++....+.++ +...+.+++|+|||+++++++..++.|++||+.+++.+..+.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~--~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~ 79 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP--DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 79 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS--SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcC--CCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence 4677776 666779999999999999988777765 456678999999999987775789999999999999888776
Q ss_pred ecCc------cEEEEEe--eCCEEEEEe------------cCCeEEEEECCCCCcCce-eeecCCCceEEEEEcCCCCEE
Q psy8285 249 THMH------QVIAMCW--NGNLLSCGT------------IGGNILHYDVRTHSDYPT-AITREGDVVCGLKWSPNGRYL 307 (507)
Q Consensus 249 ~~~~------~v~~~~~--~~~~l~~~~------------~dg~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l 307 (507)
.... .+..++| ||+++++++ .++.+.+|+..+++.... ........+..+.++++++++
T Consensus 80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (346)
T d1jmxb_ 80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY 159 (346)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEE
T ss_pred ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEE
Confidence 4322 2345666 788887765 467788999887653211 122233455667778888776
Q ss_pred EEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEc-----------------------cCCCCeEE
Q psy8285 308 ASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGG-----------------------GICDQTVR 364 (507)
Q Consensus 308 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------------------~~~d~~i~ 364 (507)
+.+ +.+.+|++.++ +.+..+..+ .....+.++|++..++.... ...+..+.
T Consensus 160 ~~~--~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (346)
T d1jmxb_ 160 VAG--PDIYKMDVKTG---KYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 233 (346)
T ss_dssp EES--SSEEEECTTTC---CEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred EeC--CcceEEEccCC---CEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEE
Confidence 654 56888998876 445444322 22333444444432221111 11256788
Q ss_pred EEeCCCCCeeeeee--cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEE
Q psy8285 365 LWNSMNGKEKCHVK--TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAA 442 (507)
Q Consensus 365 i~d~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 442 (507)
+||+.++....... ....+..+.+++++.+++. .. ++.|.+||..+++.+..+. +...+.+++|+|||++|+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~ 309 (346)
T d1jmxb_ 234 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY--GV-LNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLG 309 (346)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEE--EE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEE
T ss_pred EEECCCCceEEEEeecccceeEEEEEeCCCCEEEE--ec-CCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEE
Confidence 89988887655433 3357889999999999887 33 5689999999999988876 45679999999999999999
Q ss_pred eCCCcEEEEecCCCCcccceeecCC
Q psy8285 443 SADETISIWNCFPRDKKRKARQVGS 467 (507)
Q Consensus 443 ~~dg~i~iw~~~~~~~~~~~~~~~~ 467 (507)
+.|+.|++||+.+.+.+..++....
T Consensus 310 ~~d~~v~v~D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 310 GTFNDLAVFNPDTLEKVKNIKLPGG 334 (346)
T ss_dssp SBSSEEEEEETTTTEEEEEEECSSS
T ss_pred eCCCcEEEEECccCCEEEEEECCCC
Confidence 9999999999999998887765443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.89 E-value=6.3e-22 Score=182.01 Aligned_cols=244 Identities=13% Similarity=0.073 Sum_probs=163.8
Q ss_pred eeeeCCCC--EEEE-EcCCeEEEEECCCCceeEEEecCCC---CCCceEEEEEccCCCeEEEEe-----------CCCCc
Q psy8285 170 GLDWGYHD--TLAV-ALDTSVYTWNTKTNKTQLLVEYPTY---DNAYISCVAWKPRTTDLAVTN-----------TCTEY 232 (507)
Q Consensus 170 ~~~~s~~~--~~~~-~~~~~i~iw~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~-----------~~dg~ 232 (507)
.++|+||+ ++++ ..++.|++||+.+++.......... +...+..++|+|||++++++. ..++.
T Consensus 44 ~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~ 123 (346)
T d1jmxb_ 44 TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123 (346)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCE
T ss_pred eEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcce
Confidence 36666765 3333 3789999999999988766654320 112356899999999998762 14778
Q ss_pred EEEEeCCCceeEEEEeec--CccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCC---
Q psy8285 233 IDLWHEQEERLIQKLRTH--MHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGR--- 305 (507)
Q Consensus 233 i~iwd~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--- 305 (507)
+.+|+..+++....+..+ ...+..+.+ ++..++ .+ +.+.+|++.+.+ ....+..+ .....+.++|++.
T Consensus 124 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~ 198 (346)
T d1jmxb_ 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV-AG--PDIYKMDVKTGK-YTVALPLR-NWNRKGYSAPDVLYFW 198 (346)
T ss_dssp EEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE-ES--SSEEEECTTTCC-EEEEECST-TCCCTTBCCCBCCCCC
T ss_pred EEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE-eC--CcceEEEccCCC-EEEEEecC-CCccceEEeccccEEE
Confidence 899998887655443322 233444444 344443 33 568889987765 22222221 1222233333332
Q ss_pred -----------------------EEEEEe-CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCC
Q psy8285 306 -----------------------YLASGS-NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQ 361 (507)
Q Consensus 306 -----------------------~l~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~ 361 (507)
.++++. +..+.+||...+. ........+...+..+.+++++..++... ++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 272 (346)
T d1jmxb_ 199 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGV----LN 272 (346)
T ss_dssp CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEE----ES
T ss_pred EEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCc--eEEEEeecccceeEEEEEeCCCCEEEEec----CC
Confidence 223333 3667888887651 12333455778889999999987766543 67
Q ss_pred eEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccc
Q psy8285 362 TVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQER 426 (507)
Q Consensus 362 ~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~ 426 (507)
.+.+||..+++.+..+.....+.+++|+|||++|++ ++.|+.|++||..+++.+.+++.+.+.
T Consensus 273 ~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v--~~~d~~v~v~D~~t~~~i~~i~~p~g~ 335 (346)
T d1jmxb_ 273 RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYL--GGTFNDLAVFNPDTLEKVKNIKLPGGD 335 (346)
T ss_dssp EEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEE--ESBSSEEEEEETTTTEEEEEEECSSSC
T ss_pred eEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEE--EeCCCcEEEEECccCCEEEEEECCCCC
Confidence 899999999999998887778999999999999999 778999999999999999988755443
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=1.6e-20 Score=177.49 Aligned_cols=223 Identities=7% Similarity=-0.028 Sum_probs=162.6
Q ss_pred EEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCcee--EEEEe---ecCcc
Q psy8285 179 LAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERL--IQKLR---THMHQ 253 (507)
Q Consensus 179 ~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~--~~~~~---~~~~~ 253 (507)
++.+.++.|.+||..+++....+.. + ..+..++|+|||++++++ +.||.+++||+.+++. ...+. .|...
T Consensus 36 v~~~d~g~v~v~D~~t~~v~~~~~~---g-~~~~~v~fSpDG~~l~~~-s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~ 110 (432)
T d1qksa2 36 VTLRDAGQIALIDGSTYEIKTVLDT---G-YAVHISRLSASGRYLFVI-GRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 110 (432)
T ss_dssp EEETTTTEEEEEETTTCCEEEEEEC---S-SCEEEEEECTTSCEEEEE-ETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred EEEcCCCEEEEEECCCCcEEEEEeC---C-CCeeEEEECCCCCEEEEE-cCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence 4556899999999999999887764 3 469999999999999998 8999999999988763 33333 34445
Q ss_pred EEEEEe--eCCEE-EEEecCCeEEEEECCCCCcCceeee-----------cCCCceEEEEEcCCCCEEEEEe-C-CcEEE
Q psy8285 254 VIAMCW--NGNLL-SCGTIGGNILHYDVRTHSDYPTAIT-----------REGDVVCGLKWSPNGRYLASGS-N-NTVKI 317 (507)
Q Consensus 254 v~~~~~--~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~~l~~~~-d-~~i~i 317 (507)
+.+..| ||++| +++..++.|++||..+++ ....+. .+......+.++|++..++... + +.|.+
T Consensus 111 ~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~ 189 (432)
T d1qksa2 111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL 189 (432)
T ss_dssp EECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred EEecccCCCCCEEEEEcCCCCeEEEEeCcccc-ceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEE
Confidence 555555 78875 778889999999999876 222222 2345567789999998876655 4 99999
Q ss_pred EEcCCCCCCCCeeeec-CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC------CCeEEEEECC
Q psy8285 318 WDFRQLDAKRPQVNNQ-CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD------SQVTSILWSE 390 (507)
Q Consensus 318 ~d~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------~~i~~~~~s~ 390 (507)
||..+. +...... .+...+..++|+|+|+++++++.. +..+.++|..+++....+... .......+..
T Consensus 190 ~d~~~~---~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~--~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 264 (432)
T d1qksa2 190 VDYTDL---NNLKTTEISAERFLHDGGLDGSHRYFITAANA--RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT 264 (432)
T ss_dssp EETTCS---SEEEEEEEECCSSEEEEEECTTSCEEEEEEGG--GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT
T ss_pred EEccCC---CcceEEEEcccCccccceECCCCCEEEEeccc--cceEEEeecccceEEEEeccCccccccCcccceecCC
Confidence 998875 3332221 355678899999999888887765 889999999998877766432 2344455555
Q ss_pred CCCeEEEEeccCCCeEEEEeCCC
Q psy8285 391 QYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 391 ~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
.+....+. ...++.|.+|+...
T Consensus 265 ~g~~~~~~-~lg~~~v~~~~~~~ 286 (432)
T d1qksa2 265 FGPVWATS-HMGDDSVALIGTDP 286 (432)
T ss_dssp TEEEEEEE-BSSSSEEEEEECCT
T ss_pred CCceeccc-ccCCceEEeccccc
Confidence 55555443 34577888887654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.88 E-value=5.6e-21 Score=174.88 Aligned_cols=238 Identities=11% Similarity=0.008 Sum_probs=167.6
Q ss_pred eeeCCCC--EEEE-EcCCeEEEEECCCCceeEEEecCCC--CCCceEEEEEccCCCeEEEEeC-----------CCCcEE
Q psy8285 171 LDWGYHD--TLAV-ALDTSVYTWNTKTNKTQLLVEYPTY--DNAYISCVAWKPRTTDLAVTNT-----------CTEYID 234 (507)
Q Consensus 171 ~~~s~~~--~~~~-~~~~~i~iw~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-----------~dg~i~ 234 (507)
++++||+ ++++ +.++.|.+||+.+++.......... +...+..++|+|++++++++.. .+..+.
T Consensus 39 i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~ 118 (337)
T d1pbyb_ 39 PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVA 118 (337)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEE
T ss_pred EEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecccccccee
Confidence 6666776 3333 4789999999999998776654320 1234557999999999988722 467899
Q ss_pred EEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCC---------
Q psy8285 235 LWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPN--------- 303 (507)
Q Consensus 235 iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~--------- 303 (507)
+||..+++....+..+ ..+..++| +++++++++. .+.+||..+.+. ......+.. .....+.|+
T Consensus 119 ~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 193 (337)
T d1pbyb_ 119 LYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGR--DLHVMDPEAGTL-VEDKPIQSW-EAETYAQPDVLAVWNQHE 193 (337)
T ss_dssp EEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESS--SEEEEETTTTEE-EEEECSTTT-TTTTBCCCBCCCCCCCCT
T ss_pred eccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcC--CcceeeeecCcE-EEEeecCCc-cccceecCCcceeecccc
Confidence 9999999988887744 45667777 7888888864 467899887642 222211110 000111111
Q ss_pred ---------------CCEEEEEe-CCcEEEEEcCCCCCCCC-eeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEE
Q psy8285 304 ---------------GRYLASGS-NNTVKIWDFRQLDAKRP-QVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLW 366 (507)
Q Consensus 304 ---------------~~~l~~~~-d~~i~i~d~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~ 366 (507)
......+. ++.+.+||...+ .. ...+..+...+..+.++|++..++. . ++.+++|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~i~v~ 265 (337)
T d1pbyb_ 194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG---EMAMREVRIMDVFYFSTAVNPAKTRAFG-A----YNVLESF 265 (337)
T ss_dssp TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTC---CEEEEEEEECSSCEEEEEECTTSSEEEE-E----ESEEEEE
T ss_pred ccceeeeeeeeeeeccceeeecccCccEEEEEcCCC---cEEEEEecCCCcceEEEEecccceEEEE-c----cccEEEE
Confidence 11111112 356888888876 32 2334457778889999998865443 2 7899999
Q ss_pred eCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc
Q psy8285 367 NSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH 423 (507)
Q Consensus 367 d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~ 423 (507)
|+.+++.+..+.....+.+++|+|||++|++ ++.++.|++||..+++.+.+++..
T Consensus 266 d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v--~~~~~~i~v~D~~t~~~v~~i~~~ 320 (337)
T d1pbyb_ 266 DLEKNASIKRVPLPHSYYSVNVSTDGSTVWL--GGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp ETTTTEEEEEEECSSCCCEEEECTTSCEEEE--ESBSSEEEEEETTTCCEEEEEECG
T ss_pred ECCCCcEEEEEcCCCCEEEEEECCCCCEEEE--EeCCCcEEEEECCCCcEEEEEECC
Confidence 9999999999988888999999999999999 788999999999999999888643
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.88 E-value=3e-19 Score=165.99 Aligned_cols=323 Identities=9% Similarity=-0.033 Sum_probs=215.3
Q ss_pred cccccceeeeeeccCcceeeeccccc--cccceeeecccCCcceeeeecCcccceeeccccccccccCCccCCceeEeec
Q psy8285 3 QCHLSAVKAIAWCPWEPTLLATGGGI--CDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRESSRSKMVNTDRYVVDR 80 (507)
Q Consensus 3 ~gH~~~V~~l~fsp~g~~llasg~~~--~d~~i~iWd~~~g~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~~~~~~~ 80 (507)
..|.+++.+++++|||+++.++.... .+..|.+||..+++.+.++.... ...+.|||+++.+.....
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~-~~~~a~SpDG~~l~va~~---------- 85 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF-LPNPVAAHSGSEFALAST---------- 85 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC-CccEEEcCCCCEEEEEee----------
Confidence 46889999999999999966653211 34579999999999998876332 236778777764332100
Q ss_pred CCccccccccccccccccCchhHHHHHHhhhhhhcccccccccceeEecCCCCCcccccccCCCCCccccCCchhhhcCC
Q psy8285 81 SSYDSLCSHYLLQQANDETISYREQKKRRHLSFLLHGFEIDRKKVLNQSKRTVSPTQFLRTLGKLPRKVKAKPERILEAP 160 (507)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (507)
T Consensus 86 -------------------------------------------------------------------------------- 85 (373)
T d2madh_ 86 -------------------------------------------------------------------------------- 85 (373)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccceeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCC----CCceEEEEEccCCCeEEEEe-CCCCcEEE
Q psy8285 161 SIINDFYTSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYD----NAYISCVAWKPRTTDLAVTN-TCTEYIDL 235 (507)
Q Consensus 161 ~~~~~~~i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-~~dg~i~i 235 (507)
.......+..++.|.+||..+++........... ......+.|+++++.+++.. ..++.+.+
T Consensus 86 -------------~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~ 152 (373)
T d2madh_ 86 -------------SFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGL 152 (373)
T ss_pred -------------cCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEE
Confidence 0011333456789999999999887665543200 11225678999998876652 44668899
Q ss_pred EeCCCceeEEEEeecCccEEEEEe--eCC-EEEEEecCCeEEEEECCCCCcCceeee------cCCCceEEEEEcCCCCE
Q psy8285 236 WHEQEERLIQKLRTHMHQVIAMCW--NGN-LLSCGTIGGNILHYDVRTHSDYPTAIT------REGDVVCGLKWSPNGRY 306 (507)
Q Consensus 236 wd~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~ 306 (507)
|+....+...... ...++.+ +++ .+++.+.|+.+.+|+...... ..... ........+.+.+++.+
T Consensus 153 ~~~~~~~~~~~~~----~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (373)
T d2madh_ 153 VVQGGSSDDQLLS----SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAA-GAGLVGAMLTAAQNLLTQPAQANKSGRI 227 (373)
T ss_pred eeccCCeEEEEec----cceeEEEecCCCcEEEEEcCCCeEEEEEcCCcee-eEEEeeeccccCccceeeeEEECCCceE
Confidence 9988776554443 2344555 444 567888999999999987652 22221 11222345567777766
Q ss_pred EEEEeCCcEEEEEcCCCCCCCCeeeecC----------CCCCeeEEEEccCCCcEEEEEc-------cCCCCeEEEEeCC
Q psy8285 307 LASGSNNTVKIWDFRQLDAKRPQVNNQC----------HLSAVKAIAWCPWEPTLLATGG-------GICDQTVRLWNSM 369 (507)
Q Consensus 307 l~~~~d~~i~i~d~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~-------~~~d~~i~i~d~~ 369 (507)
++.+.++.+.+|+...... ........ .......++++|++..++.... ...++.+.+||..
T Consensus 228 ~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 306 (373)
T d2madh_ 228 VWPVYSGKILQADISAAGA-TNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGL 306 (373)
T ss_pred EEecCCceEEEEEcCCCeE-EEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECC
Confidence 6666678999998876511 01111111 1223445667776655443221 1126789999999
Q ss_pred CCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCC
Q psy8285 370 NGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPD 435 (507)
Q Consensus 370 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~ 435 (507)
+++.+..+.....+..++|+|||+.++.+++..|+.|++||+.+++.+.++..+....+.+++.++
T Consensus 307 t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 307 VGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred CCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 999999998888899999999999654333788999999999999999999887777777776543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1.5e-19 Score=165.18 Aligned_cols=274 Identities=10% Similarity=0.082 Sum_probs=189.4
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE---eecCccE
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL---RTHMHQV 254 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v 254 (507)
+++++.+++|++|++.........+... +.+.+..++|+|||++|++++..|+.|++|++........+ ..+...+
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~-~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALTLTQVVD-VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEECCCCCcEEEEEEcCCCCeEEEEEEc-CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 3455589999999987644333332222 77889999999999999877577999999998765433222 2244456
Q ss_pred EEEEe--eCCEEEEEec-CCeEEEEECCCCCc-CceeeecCCCceEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCCC
Q psy8285 255 IAMCW--NGNLLSCGTI-GGNILHYDVRTHSD-YPTAITREGDVVCGLKWSPNGRYLASGS-N-NTVKIWDFRQLDAKRP 328 (507)
Q Consensus 255 ~~~~~--~~~~l~~~~~-dg~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~ 328 (507)
..++| |+++|++++. ++.+.+|+...... .......+...+.++.++|++++++.++ + ..|.+|+.........
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence 67888 7888888875 66889998776542 1223345666788899999999998888 4 8899999876521111
Q ss_pred ee---eecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe----eeeee-------cCCCeEEEEECCCCCe
Q psy8285 329 QV---NNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE----KCHVK-------TDSQVTSILWSEQYRE 394 (507)
Q Consensus 329 ~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~-------~~~~i~~~~~s~~~~~ 394 (507)
.. ...........++|++++..++.+... .+...+++...... ..... .......+++++++++
T Consensus 166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~ 243 (333)
T d1ri6a_ 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL--NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH 243 (333)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETT--TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred eeceeeeeecCCCccEEEEeccceeEEeeccc--cCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCc
Confidence 11 112244567899999999877777654 67788887654321 11111 1235678899999998
Q ss_pred EEEEeccCCCeEEEEeCCCccEEEEee---ccccceeEEEECCCCCEEEEEe-CCCcEEEEecCC
Q psy8285 395 LVTSHGKQDCSLKMWEYPRLHLIEELK---IHQERILSAVLSPDQTCVAAAS-ADETISIWNCFP 455 (507)
Q Consensus 395 l~~~~g~~d~~i~v~d~~~~~~~~~~~---~~~~~i~~~~~s~~~~~l~s~~-~dg~i~iw~~~~ 455 (507)
+++. +..++.+.+|++........+. .....+.+++|+|||++|++++ .++.|++|++..
T Consensus 244 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 244 LYAC-DRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 307 (333)
T ss_dssp EEEE-ETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred eeee-cccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence 8876 5678899999987654333332 2345678899999999887765 468899997644
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=2.6e-18 Score=158.31 Aligned_cols=253 Identities=9% Similarity=0.017 Sum_probs=167.1
Q ss_pred EEcCCeEEEEECCCCceeEEEecCCCC----CCceEEEEEccCCCeEEEEe-CCCCcEEEEeCCCceeEEEEeecCccEE
Q psy8285 181 VALDTSVYTWNTKTNKTQLLVEYPTYD----NAYISCVAWKPRTTDLAVTN-TCTEYIDLWHEQEERLIQKLRTHMHQVI 255 (507)
Q Consensus 181 ~~~~~~i~iw~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 255 (507)
+..++.|++||..+++..........+ ......++|+|++++++++. +.+..+.+|+..+++.+..+..+....
T Consensus 74 g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 152 (355)
T d2bbkh_ 74 GERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH- 152 (355)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE-
T ss_pred cCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce-
Confidence 346789999999999887766543211 12335689999999988762 346789999999999888876543321
Q ss_pred EEEeeCCEEEEEecCCeEEEEECCCCCcCcee-----eecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCe
Q psy8285 256 AMCWNGNLLSCGTIGGNILHYDVRTHSDYPTA-----ITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQ 329 (507)
Q Consensus 256 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~ 329 (507)
.........+..+.|+....+........... ...+...+....+.+++..++.++ ++.+++|++..+.. ..+
T Consensus 153 ~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~ 231 (355)
T d2bbkh_ 153 IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFL 231 (355)
T ss_dssp EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EEC
T ss_pred EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE-EEE
Confidence 22223444455555665555554433211111 112233345567788888888877 59999999987521 111
Q ss_pred eeecCC----------CCCeeEEEEccCCCcEEEEEcc-------CCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCC
Q psy8285 330 VNNQCH----------LSAVKAIAWCPWEPTLLATGGG-------ICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQY 392 (507)
Q Consensus 330 ~~~~~~----------~~~v~~~~~~~~~~~~~~~~~~-------~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~ 392 (507)
.....+ ......++++|++..+++.... .....|.+||..+++.+..+.....+.+++|+|||
T Consensus 232 ~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG 311 (355)
T d2bbkh_ 232 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDE 311 (355)
T ss_dssp CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSS
T ss_pred eccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCC
Confidence 111111 1234568899999877765431 01257999999999999888877778999999999
Q ss_pred CeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCC
Q psy8285 393 RELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPD 435 (507)
Q Consensus 393 ~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~ 435 (507)
+.++.+++..|+.|++||+.+++.+.++.++...-..+.+.++
T Consensus 312 ~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 312 KPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp SCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred CeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence 8543332778999999999999999999876554455554433
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.84 E-value=2e-17 Score=153.46 Aligned_cols=280 Identities=6% Similarity=-0.077 Sum_probs=189.4
Q ss_pred eeeeeeCCCC-EEEEE------cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEe---------CCCC
Q psy8285 168 TSGLDWGYHD-TLAVA------LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTN---------TCTE 231 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~------~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~~dg 231 (507)
+..++++||+ .+.+. ..+.|++||..+++....+.. +. ...++|+|||++|++++ ..++
T Consensus 23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~---~~--~~~~a~SpDG~~l~va~~~~~~~~~~~~~~ 97 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG---GF--LPNPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC---CC--CccEEEcCCCCEEEEEeecCCcccccccce
Confidence 5568889998 33332 346799999999998766543 33 33799999999999872 2357
Q ss_pred cEEEEeCCCceeEEEEeecCccEEEE-------Ee--eCCEEEEEe--cCCeEEEEECCCCCcCceeeecCCCceEEEEE
Q psy8285 232 YIDLWHEQEERLIQKLRTHMHQVIAM-------CW--NGNLLSCGT--IGGNILHYDVRTHSDYPTAITREGDVVCGLKW 300 (507)
Q Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~v~~~-------~~--~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 300 (507)
.|.+||..+++.+..+..+......+ .| +++.++... .++.+.+|+....+ ...+.....++.+
T Consensus 98 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 172 (373)
T d2madh_ 98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS-----DDQLLSSPTCYHI 172 (373)
T ss_pred EEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe-----EEEEeccceeEEE
Confidence 89999999999988887665554332 23 555444333 34566677766543 2233344678899
Q ss_pred cCCCCEEE-EEe-CCcEEEEEcCCCCCCCCeeeecC------CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC
Q psy8285 301 SPNGRYLA-SGS-NNTVKIWDFRQLDAKRPQVNNQC------HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK 372 (507)
Q Consensus 301 ~~~~~~l~-~~~-d~~i~i~d~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~ 372 (507)
+|+++.++ +.+ |+.+.+|+.... ........ .......+.+.+++ .++..+. ++.+.+|+...+.
T Consensus 173 s~~g~~~~v~~~~dg~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~v~~~~~~~~~ 245 (373)
T d2madh_ 173 HPGAPSTFYLLCAQGGLAKTDHAGG---AAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVY---SGKILQADISAAG 245 (373)
T ss_pred ecCCCcEEEEEcCCCeEEEEEcCCc---eeeEEEeeeccccCccceeeeEEECCCc-eEEEecC---CceEEEEEcCCCe
Confidence 99998764 444 699999999876 33332221 12223445566655 3444443 8899999988765
Q ss_pred eeeeeec-------------CCCeEEEEECCCCCeEEEEe--------ccCCCeEEEEeCCCccEEEEeeccccceeEEE
Q psy8285 373 EKCHVKT-------------DSQVTSILWSEQYRELVTSH--------GKQDCSLKMWEYPRLHLIEELKIHQERILSAV 431 (507)
Q Consensus 373 ~~~~~~~-------------~~~i~~~~~s~~~~~l~~~~--------g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~ 431 (507)
....... ......+++++++..++... ...++.+.+||..+++.+..+. +...+..++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a 324 (373)
T d2madh_ 246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAIS 324 (373)
T ss_pred EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEE
Confidence 4322211 12334567777776655421 3456789999999999988876 566789999
Q ss_pred ECCCCCE--EEEEeCCCcEEEEecCCCCcccceeec
Q psy8285 432 LSPDQTC--VAAASADETISIWNCFPRDKKRKARQV 465 (507)
Q Consensus 432 ~s~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~ 465 (507)
|+|||+. +++++.|+.|++||+.+++.+..+...
T Consensus 325 ~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~ 360 (373)
T d2madh_ 325 VAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL 360 (373)
T ss_pred ECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCC
Confidence 9999984 467889999999999999998877643
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=1.7e-17 Score=151.20 Aligned_cols=241 Identities=10% Similarity=0.081 Sum_probs=161.6
Q ss_pred eeeCCCC--EEEEE-cCCeEEEEECCCCcee--EEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEE
Q psy8285 171 LDWGYHD--TLAVA-LDTSVYTWNTKTNKTQ--LLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQ 245 (507)
Q Consensus 171 ~~~s~~~--~~~~~-~~~~i~iw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~ 245 (507)
|+||||+ +++++ .++.|++|++...... ...... ....+..++|+|+|++|++++..++.+.+|+........
T Consensus 42 la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~--~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~ 119 (333)
T d1ri6a_ 42 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA--LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG 119 (333)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE--CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE
T ss_pred EEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc--cCCCceEEEEcCCCCEEeecccCCCceeeecccccccee
Confidence 5556665 33444 5899999998765432 222221 445677899999999999985568899999887765544
Q ss_pred EE--eecCccEEEEEe--eCCEEEEEec-CCeEEEEECCCCCcCce-----eeecCCCceEEEEEcCCCCEEEEEe-C-C
Q psy8285 246 KL--RTHMHQVIAMCW--NGNLLSCGTI-GGNILHYDVRTHSDYPT-----AITREGDVVCGLKWSPNGRYLASGS-N-N 313 (507)
Q Consensus 246 ~~--~~~~~~v~~~~~--~~~~l~~~~~-dg~i~i~d~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~-d-~ 313 (507)
.. ..+...+.++.+ +++.++.++. +..+.+|+......... ...........++|++++..++... . +
T Consensus 120 ~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~ 199 (333)
T d1ri6a_ 120 VVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNS 199 (333)
T ss_dssp EEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTT
T ss_pred cccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccC
Confidence 33 345566777777 6777776664 45799999876542211 1223345568899999999988776 3 7
Q ss_pred cEEEEEcCCCCCCC-Ceeee------cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeee----ecCCC
Q psy8285 314 TVKIWDFRQLDAKR-PQVNN------QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHV----KTDSQ 382 (507)
Q Consensus 314 ~i~i~d~~~~~~~~-~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~----~~~~~ 382 (507)
...+++........ ..... .........++++++++.+++.... ++.+.+|++........+ .....
T Consensus 200 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (333)
T d1ri6a_ 200 SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT--ASLITVFSVSEDGSVLSKEGFQPTETQ 277 (333)
T ss_dssp EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT--TTEEEEEEECTTSCCEEEEEEEECSSS
T ss_pred ceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeeccc--CCeEEEEEEcCCCCEEEEEEEeCCCCC
Confidence 78888875531111 11111 1133456788999999888887765 889999988765433322 22356
Q ss_pred eEEEEECCCCCeEEEEeccCCCeEEEEe--CCCccE
Q psy8285 383 VTSILWSEQYRELVTSHGKQDCSLKMWE--YPRLHL 416 (507)
Q Consensus 383 i~~~~~s~~~~~l~~~~g~~d~~i~v~d--~~~~~~ 416 (507)
+..++|+|||++|+++ +..++.|.+|+ ..++++
T Consensus 278 p~~~a~spDGk~l~va-~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 278 PRGFNVDHSGKYLIAA-GQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp CCCEEECTTSSEEEEE-CTTTCEEEEEEEETTTTEE
T ss_pred eeEEEEeCCCCEEEEE-ECCCCeEEEEEEECCCCcE
Confidence 7889999999998875 66778999995 456543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.81 E-value=1.2e-17 Score=153.90 Aligned_cols=279 Identities=10% Similarity=0.066 Sum_probs=189.8
Q ss_pred eeCCCC-EEEEE------cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEe---------CCCCcEEE
Q psy8285 172 DWGYHD-TLAVA------LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTN---------TCTEYIDL 235 (507)
Q Consensus 172 ~~s~~~-~~~~~------~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~~dg~i~i 235 (507)
+.+||+ .+.+. ..+.|++||..+++....... +. ...++|+|||++|++++ ..++.|++
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~---g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v 82 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG---GF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEV 82 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE---CS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC---CC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEE
Confidence 456777 33332 355799999999988766553 32 33799999999998762 24789999
Q ss_pred EeCCCceeEEEEeecCcc-------EEEEEe--eCCEEEEEe--cCCeEEEEECCCCCcCceeeecCC-------CceEE
Q psy8285 236 WHEQEERLIQKLRTHMHQ-------VIAMCW--NGNLLSCGT--IGGNILHYDVRTHSDYPTAITREG-------DVVCG 297 (507)
Q Consensus 236 wd~~~~~~~~~~~~~~~~-------v~~~~~--~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~-------~~v~~ 297 (507)
||+.+++.+..+..+... ...+.| +++.++.+. .+..+.+|+..+.+ ....+..+. .....
T Consensus 83 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 161 (355)
T d2bbkh_ 83 FDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA-FKRMLDVPDCYHIFPTAPDTF 161 (355)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE-EEEEEECCSEEEEEEEETTEE
T ss_pred EECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCc-EeeEEecCCcceEeecCCcce
Confidence 999999988877654322 223455 788777664 45678999998875 233332222 12334
Q ss_pred EEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeee
Q psy8285 298 LKWSPNGRYLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKC 375 (507)
Q Consensus 298 ~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~ 375 (507)
+.+++|++.++... + +.+.+++.... .. .+...+....+.+++..++.+.. ++.+++|++..++...
T Consensus 162 ~~~~~dg~~~~v~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~ 230 (355)
T d2bbkh_ 162 FMHCRDGSLAKVAFGTEGTPEITHTEVF---HP-----EDEFLINHPAYSQKAGRLVWPTY---TGKIHQIDLSSGDAKF 230 (355)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCC---SC-----TTSCBCSCCEEETTTTEEEEEBT---TSEEEEEECTTSSCEE
T ss_pred EEEcCCCCEEEEEecCCCeEEEEecccc---cc-----eecceeeeccccCCCCeEEEecC---CCeEEEEecCCCcEEE
Confidence 67778887776655 3 66666665543 11 13334455677777766666554 8999999998876432
Q ss_pred e--eec-----------CCCeEEEEECCCCCeEEEEec--------cCCCeEEEEeCCCccEEEEeeccccceeEEEECC
Q psy8285 376 H--VKT-----------DSQVTSILWSEQYRELVTSHG--------KQDCSLKMWEYPRLHLIEELKIHQERILSAVLSP 434 (507)
Q Consensus 376 ~--~~~-----------~~~i~~~~~s~~~~~l~~~~g--------~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~ 434 (507)
. ... ......+++++++..+++... ...+.|.+||..+++.+..+.. ...+.+++|+|
T Consensus 231 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~sp 309 (355)
T d2bbkh_ 231 LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQ 309 (355)
T ss_dssp CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECC
T ss_pred EeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcC
Confidence 1 111 122345889999998887421 1124799999999999888874 45688999999
Q ss_pred CCC--EEEEEeCCCcEEEEecCCCCcccceeecCCC
Q psy8285 435 DQT--CVAAASADETISIWNCFPRDKKRKARQVGSG 468 (507)
Q Consensus 435 ~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 468 (507)
||+ ++++++.|+.|++||+.+++.+..+...+..
T Consensus 310 DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~ 345 (355)
T d2bbkh_ 310 DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG 345 (355)
T ss_dssp SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS
T ss_pred CCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCC
Confidence 997 3466778999999999999988877644443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.71 E-value=6.2e-16 Score=142.88 Aligned_cols=237 Identities=6% Similarity=-0.066 Sum_probs=161.8
Q ss_pred cCCeEEEEECCCCceeEEEecCCC----CCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEE
Q psy8285 183 LDTSVYTWNTKTNKTQLLVEYPTY----DNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMC 258 (507)
Q Consensus 183 ~~~~i~iw~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~ 258 (507)
.++.|.+||..+++.......+.. .......++|+|||++|+++...++.+.+||+.+++....+..+..... ..
T Consensus 94 ~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~~ 172 (368)
T d1mdah_ 94 RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI-HP 172 (368)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC-EE
T ss_pred cCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE-cc
Confidence 467899999999988776655320 1122346899999999998845689999999999999888876544321 12
Q ss_pred eeCCEEEEEecCCeEEEEECCCCCcCce-----eeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeee--
Q psy8285 259 WNGNLLSCGTIGGNILHYDVRTHSDYPT-----AITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVN-- 331 (507)
Q Consensus 259 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~-- 331 (507)
.....++..+.||.+.++++........ ....+...+....+.+++..+... .+.+++++.... .....
T Consensus 173 ~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~v~~~~~~~~---~~~~~~~ 248 (368)
T d1mdah_ 173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV-ASSILQGDIPAA---GATMKAA 248 (368)
T ss_dssp EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB-SSCCEEEECCSS---CCEEECC
T ss_pred CCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec-CCCEEEEeecCC---ceEEEee
Confidence 2566777888899999998876542221 122233445567777777655433 356666666543 11111
Q ss_pred ecC----------CCCCeeEEEEccCCCcEEEEEccC------CCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeE
Q psy8285 332 NQC----------HLSAVKAIAWCPWEPTLLATGGGI------CDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYREL 395 (507)
Q Consensus 332 ~~~----------~~~~v~~~~~~~~~~~~~~~~~~~------~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l 395 (507)
... .......++++|++..+++...+. ....|.+||..+++.+..+.....+..++|+|||+.+
T Consensus 249 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ 328 (368)
T d1mdah_ 249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASD 328 (368)
T ss_dssp CCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCE
T ss_pred cccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEE
Confidence 000 112234688899987776654320 1246999999999999888877788999999999854
Q ss_pred EEEeccCCCeEEEEeCCCccEEEEeeccc
Q psy8285 396 VTSHGKQDCSLKMWEYPRLHLIEELKIHQ 424 (507)
Q Consensus 396 ~~~~g~~d~~i~v~d~~~~~~~~~~~~~~ 424 (507)
+.+++..++.|++||..+++.+.++....
T Consensus 329 ly~s~~~~~~v~v~D~~tgk~~~~i~~g~ 357 (368)
T d1mdah_ 329 NYANSAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp EEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred EEEEeCCCCeEEEEECCCCCEEEEEECCC
Confidence 33226788999999999999999887543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.67 E-value=2.2e-16 Score=144.53 Aligned_cols=261 Identities=11% Similarity=0.010 Sum_probs=170.6
Q ss_pred eeeCCCC-EE-EE-EcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCc---------------
Q psy8285 171 LDWGYHD-TL-AV-ALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEY--------------- 232 (507)
Q Consensus 171 ~~~s~~~-~~-~~-~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~--------------- 232 (507)
...+||| .+ +. ..+++|.++|+.+++..++..++ ....+..++|+|+++.+.+....+..
T Consensus 77 t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP--~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~ 154 (441)
T d1qnia2 77 TDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIP--NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNS 154 (441)
T ss_dssp ETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECT--TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGE
T ss_pred ecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecC--CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccc
Confidence 3345677 33 33 37889999999999988888776 56789999999999854333122222
Q ss_pred ---EEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCC-eEEEEECCCCCcCceeeecCCCceEEEEEcCCCCE
Q psy8285 233 ---IDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGG-NILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY 306 (507)
Q Consensus 233 ---i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 306 (507)
+..+|..+.+...++.... ....+.+ +|+++++.+.+. .+..++..+... ...+... ..-..++++|+|++
T Consensus 155 ~~~~~~iD~~t~~v~~qI~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~-~d~i~v~-n~p~~~~~~~dGk~ 231 (441)
T d1qnia2 155 YTMFTAIDAETMDVAWQVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRND-RDWVVVF-NVERIAAAVKAGNF 231 (441)
T ss_dssp EEEEEEEETTTCSEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSS-BCEEEEE-EHHHHHHHHHTTCC
T ss_pred cceEEeecCccceeeEEEecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcce-EEEEEeC-CccceEEEecCCCE
Confidence 3457777777766665433 3445555 788888777653 233333333221 1111100 11122446789998
Q ss_pred EEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe--------eeeee
Q psy8285 307 LASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE--------KCHVK 378 (507)
Q Consensus 307 l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--------~~~~~ 378 (507)
+..++++.+.+++.... ..+..+... .....+.++|||+++++++.. +++|.+||+.+.+. ...+.
T Consensus 232 ~~v~~~~v~vvd~~~~~---~v~~~IPvg-ksPhGv~vSPDGkyl~~~~~~--~~tvsv~d~~k~~~~~~~~~~~~~~~~ 305 (441)
T d1qnia2 232 KTIGDSKVPVVDGRGES---EFTRYIPVP-KNPHGLNTSPDGKYFIANGKL--SPTVSVIAIDKLDDLFEDKIELRDTIV 305 (441)
T ss_dssp BCCTTCCCCEEECSSSC---SSEEEECCB-SSCCCEEECTTSCEEEEECTT--SSBEEEEEGGGHHHHTTTSSCGGGGEE
T ss_pred EEeCCCCcEEEEcccCC---ceEEEEeCC-CCccCceECCCCCEEEEeCCc--CCcEEEEEeehhhhHhhccCCcceEEE
Confidence 87776788888876654 556666544 346789999999988888764 99999999865321 11111
Q ss_pred cC----CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC----------ccEEEEe-----eccccceeEEEECCCCCEE
Q psy8285 379 TD----SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR----------LHLIEEL-----KIHQERILSAVLSPDQTCV 439 (507)
Q Consensus 379 ~~----~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~----------~~~~~~~-----~~~~~~i~~~~~s~~~~~l 439 (507)
.+ -.....+|+++|..+.+ ...|..|..|++.. ...+..+ .+|...+.+..++|||++|
T Consensus 306 ~~~~~glgplh~~fd~~g~~yts--~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l 383 (441)
T d1qnia2 306 AEPELGLGPLHTTFDGRGNAYTT--LFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWL 383 (441)
T ss_dssp ECCBCCSCEEEEEECSSSEEEEE--ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEE
T ss_pred eecccccCcccceecCCceEEEc--ccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEE
Confidence 11 23566789999876655 78899999999741 1223333 4787788888999999999
Q ss_pred EEEeC
Q psy8285 440 AAASA 444 (507)
Q Consensus 440 ~s~~~ 444 (507)
++++.
T Consensus 384 ~s~~k 388 (441)
T d1qnia2 384 VVLSK 388 (441)
T ss_dssp EEEES
T ss_pred EecCc
Confidence 99954
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.66 E-value=3.9e-14 Score=135.28 Aligned_cols=139 Identities=17% Similarity=0.237 Sum_probs=104.6
Q ss_pred eeeeCCCCEEEEEcCCeEEEEECCCCceeEEEe---cCCCCCCceEEEEEccCCCeEEEEe--------CCCCcEEEEeC
Q psy8285 170 GLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVE---YPTYDNAYISCVAWKPRTTDLAVTN--------TCTEYIDLWHE 238 (507)
Q Consensus 170 ~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~--------~~dg~i~iwd~ 238 (507)
.+.|.+++-+....++.+.+||+.+++...++. +.. +...|.++.|||||++|+.+. +.++.+.+||+
T Consensus 21 ~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~ 99 (470)
T d2bgra1 21 SLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDE-FGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDL 99 (470)
T ss_dssp CCEECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTT-SSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CCEeCCCCEEEEEcCCcEEEEECCCCCEEEEEchhhhhh-ccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEEC
Confidence 478999985556678999999999998766554 233 567899999999999999872 22567899999
Q ss_pred CCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeec-----------------CCCceEEEE
Q psy8285 239 QEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITR-----------------EGDVVCGLK 299 (507)
Q Consensus 239 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------------~~~~v~~~~ 299 (507)
.+++. ..+..+...+..+.| ||+.||... ++.+++|+..++......... ..+....+.
T Consensus 100 ~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 177 (470)
T d2bgra1 100 NKRQL-ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW 177 (470)
T ss_dssp TTTEE-CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred CCCcc-cccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence 98764 457778888999999 899998864 779999999877522111111 122345678
Q ss_pred EcCCCCEEEEEe
Q psy8285 300 WSPNGRYLASGS 311 (507)
Q Consensus 300 ~~~~~~~l~~~~ 311 (507)
|+|||+.|+...
T Consensus 178 wSPDGk~ia~~~ 189 (470)
T d2bgra1 178 WSPNGTFLAYAQ 189 (470)
T ss_dssp ECTTSSEEEEEE
T ss_pred ECCCCCccceeE
Confidence 999999999876
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.62 E-value=4.2e-14 Score=130.39 Aligned_cols=272 Identities=8% Similarity=-0.069 Sum_probs=172.4
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEe---------CCCCcEEEEeCCCceeEEEEeecCcc-
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTN---------TCTEYIDLWHEQEERLIQKLRTHMHQ- 253 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~~dg~i~iwd~~~~~~~~~~~~~~~~- 253 (507)
+..|++||..+++....... +.. ..++|+|||+.|+++. ..++.|.+||..+++.+..+..+...
T Consensus 45 ~~~~~~~d~~~~~~~~~~~~---~~~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~ 119 (368)
T d1mdah_ 45 TTENWVSCAGCGVTLGHSLG---AFL--SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR 119 (368)
T ss_dssp SEEEEEEETTTTEEEEEEEE---CTT--CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred cceEEEEeCCCCcEEEEEeC---CCC--CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccce
Confidence 44688889999998776664 333 3589999999999862 23678999999999998887654321
Q ss_pred ------EEEEEe--eCCEEEEEe-cCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCC
Q psy8285 254 ------VIAMCW--NGNLLSCGT-IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQL 323 (507)
Q Consensus 254 ------v~~~~~--~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~ 323 (507)
...++| ||++|+++. .++.+.+||+.+.+ .......+..... +......++..+ |+.+.++++...
T Consensus 120 ~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~-~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~ 195 (368)
T d1mdah_ 120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGAS-DDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAA 195 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTE-EEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSS
T ss_pred ecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc-EeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCC
Confidence 123555 888887775 57899999999876 3333333322210 111122333333 566666666544
Q ss_pred CCCCCe---eeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec-------------CCCeEEEE
Q psy8285 324 DAKRPQ---VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT-------------DSQVTSIL 387 (507)
Q Consensus 324 ~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-------------~~~i~~~~ 387 (507)
...... .....+...+....+.+++ ..+... .+.+++++...++....... ......++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a 270 (368)
T d1mdah_ 196 PAAAGIVGAQCTGAQNCSSQAAQANYPG-MLVWAV----ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA 270 (368)
T ss_dssp CCCCEECCCCSCTTSCBCSCCEEETTTT-EEEECB----SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred ceeeeeeecccccccccceeecccccCc-EEEEec----CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEE
Confidence 211111 1122234445567777776 333322 56677777665543322111 01234578
Q ss_pred ECCCCCeEEEEec-------cCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCE--EEEEeCCCcEEEEecCCCCc
Q psy8285 388 WSEQYRELVTSHG-------KQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTC--VAAASADETISIWNCFPRDK 458 (507)
Q Consensus 388 ~s~~~~~l~~~~g-------~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~--l~s~~~dg~i~iw~~~~~~~ 458 (507)
++|++..+++... .....|.+||..+++.+..+.. ...+.+++|+|||+. ++++..|+.|++||..+++.
T Consensus 271 ~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~ 349 (368)
T d1mdah_ 271 KLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp EETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred EcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence 8999988876421 1123699999999999888874 467899999999973 45667789999999999998
Q ss_pred ccceeecCCCcc
Q psy8285 459 KRKARQVGSGSS 470 (507)
Q Consensus 459 ~~~~~~~~~~~~ 470 (507)
+..++.......
T Consensus 350 ~~~i~~g~~P~~ 361 (368)
T d1mdah_ 350 QSSVELDKGPES 361 (368)
T ss_dssp EEECCCCSCCCE
T ss_pred EEEEECCCCCCE
Confidence 877654433333
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.50 E-value=5.4e-12 Score=120.13 Aligned_cols=119 Identities=8% Similarity=-0.046 Sum_probs=69.9
Q ss_pred EEcCCCC--EEEEEe-CCc--EEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC--C--eEEEEeCC
Q psy8285 299 KWSPNGR--YLASGS-NNT--VKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD--Q--TVRLWNSM 369 (507)
Q Consensus 299 ~~~~~~~--~l~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d--~--~i~i~d~~ 369 (507)
.+.+++. +++... ++. |++|+.... ....+..+...|..+ ++++++.+++++.+..+ . .|.-.++.
T Consensus 325 ~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~----~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~ 399 (470)
T d2bgra1 325 HFTLDGNSFYKIISNEEGYRHICYFQIDKK----DCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLS 399 (470)
T ss_dssp EECTTSSEEEEEEECTTSCEEEEEEETTCS----CCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETT
T ss_pred eeeecCCCcEEEEeccCcCceeEEEeccCC----ceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECC
Confidence 3444443 333443 454 455555443 344444455567766 55566666665543111 1 24444666
Q ss_pred CCCeeeeee----cC-CCeEEEEECCCCCeEEEEe-ccCCCeEEEEeCCCccEEEEeec
Q psy8285 370 NGKEKCHVK----TD-SQVTSILWSEQYRELVTSH-GKQDCSLKMWEYPRLHLIEELKI 422 (507)
Q Consensus 370 ~~~~~~~~~----~~-~~i~~~~~s~~~~~l~~~~-g~~d~~i~v~d~~~~~~~~~~~~ 422 (507)
.+.....+. .+ ..+.+++|||||++++..+ |...-.+.+|+..+++.+..+..
T Consensus 400 g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~v~~le~ 458 (470)
T d2bgra1 400 DYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLED 458 (470)
T ss_dssp CTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEEC
T ss_pred CCCceeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCEEEEEec
Confidence 555444442 22 4689999999999987542 33344689999999999988865
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.47 E-value=6.7e-12 Score=114.61 Aligned_cols=229 Identities=7% Similarity=-0.017 Sum_probs=155.8
Q ss_pred CeEEEEeCCCCcEEEEeCCCceeEEEEeec------------------------------CccEEEE--EeeCCEEEEEe
Q psy8285 221 TDLAVTNTCTEYIDLWHEQEERLIQKLRTH------------------------------MHQVIAM--CWNGNLLSCGT 268 (507)
Q Consensus 221 ~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~------------------------------~~~v~~~--~~~~~~l~~~~ 268 (507)
-+.+++++.+|.|++|++.+++.++.+... ....... .+||++|++..
T Consensus 11 ~y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d 90 (441)
T d1qnia2 11 YYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFIND 90 (441)
T ss_dssp EEEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEE
T ss_pred EEEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEc
Confidence 455556588999999999999988876421 1112222 23788886654
Q ss_pred -cCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCE--EEEEeCCcE------------------EEEEcCCCCCCC
Q psy8285 269 -IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY--LASGSNNTV------------------KIWDFRQLDAKR 327 (507)
Q Consensus 269 -~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~d~~i------------------~i~d~~~~~~~~ 327 (507)
.++.|.++|+++.+........+......++|+|+++. ++..++..+ ..+|..+. +
T Consensus 91 ~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~---~ 167 (441)
T d1qnia2 91 KANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM---D 167 (441)
T ss_dssp TTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC---S
T ss_pred CCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc---e
Confidence 67889999999876322222345778999999999984 444333333 44676665 4
Q ss_pred CeeeecCCCCCeeEEEEccCCCcEEEEEccCC--------------------------------------CCeEEEEeCC
Q psy8285 328 PQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC--------------------------------------DQTVRLWNSM 369 (507)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--------------------------------------d~~i~i~d~~ 369 (507)
...+.. -.+....+.|+|+|+++++++..+. ++.+.+++..
T Consensus 168 v~~qI~-v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~ 246 (441)
T d1qnia2 168 VAWQVI-VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRG 246 (441)
T ss_dssp EEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSS
T ss_pred eeEEEe-cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEccc
Confidence 444443 2345788999999988887764211 2344555555
Q ss_pred CCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEE--------EEeecc---ccceeEEEECCCCCE
Q psy8285 370 NGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLI--------EELKIH---QERILSAVLSPDQTC 438 (507)
Q Consensus 370 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~--------~~~~~~---~~~i~~~~~s~~~~~ 438 (507)
..+.+..+........+.++|||++++++ +..+++|.|||+.+.+.. ..+.++ .-.....+|+++|..
T Consensus 247 ~~~v~~~IPvgksPhGv~vSPDGkyl~~~-~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~ 325 (441)
T d1qnia2 247 ESEFTRYIPVPKNPHGLNTSPDGKYFIAN-GKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNA 325 (441)
T ss_dssp SCSSEEEECCBSSCCCEEECTTSCEEEEE-CTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEE
T ss_pred CCceEEEEeCCCCccCceECCCCCEEEEe-CCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceE
Confidence 55666667666667889999999999887 889999999998653211 111111 112345689999988
Q ss_pred EEEEeCCCcEEEEecC
Q psy8285 439 VAAASADETISIWNCF 454 (507)
Q Consensus 439 l~s~~~dg~i~iw~~~ 454 (507)
+.+...|..|..|++.
T Consensus 326 yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 326 YTTLFIDSQVCKWNIA 341 (441)
T ss_dssp EEEETTTTEEEEEEHH
T ss_pred EEcccccceEEEeccc
Confidence 8889999999999985
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.40 E-value=3e-10 Score=103.49 Aligned_cols=274 Identities=9% Similarity=0.003 Sum_probs=158.1
Q ss_pred EEEEE--cCCeEEEEE--CCCCceeEE--EecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-eeEEEEe-e
Q psy8285 178 TLAVA--LDTSVYTWN--TKTNKTQLL--VEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE-RLIQKLR-T 249 (507)
Q Consensus 178 ~~~~~--~~~~i~iw~--~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~-~~~~~~~-~ 249 (507)
++.++ .++.|+++. .++++.... ...+ ....+.-|+|+|+++.|+++ . .+.+..|.+... ....... .
T Consensus 5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~--~~~~~s~la~s~d~~~ly~~-~-~~~~~~~~i~~~~~~~~~~~~~ 80 (365)
T d1jofa_ 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIP--QDEPISWMTFDHERKNIYGA-A-MKKWSSFAVKSPTEIVHEASHP 80 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECC--TTCCCSEEEECTTSSEEEEE-E-BTEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEeecCCCCEEEEEEcCCCCeEEEeeeeecc--CCCCCCEEEEcCCCCEEEEE-e-CCcEEEEEEeCCCCeEEEeeec
Confidence 56665 355676554 445554332 2233 34556779999999999887 3 456777766532 2222211 1
Q ss_pred cCccEEEEEe--eCCE--EEEEe-cCCeEEEEEC------------CCCCcCc----eeeecCCCceEEEEEcCCCCEEE
Q psy8285 250 HMHQVIAMCW--NGNL--LSCGT-IGGNILHYDV------------RTHSDYP----TAITREGDVVCGLKWSPNGRYLA 308 (507)
Q Consensus 250 ~~~~v~~~~~--~~~~--l~~~~-~dg~i~i~d~------------~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~ 308 (507)
.......+.+ +++. ++++. ..+.+..+.+ ....... .........+.++.|+|||++++
T Consensus 81 ~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~ 160 (365)
T d1jofa_ 81 IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEE
Confidence 1111222333 4442 22221 1234443332 2111000 01112233578999999999999
Q ss_pred EEeC--CcEEEEEcCCCCCCCCeeee--cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeee-----e-
Q psy8285 309 SGSN--NTVKIWDFRQLDAKRPQVNN--QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHV-----K- 378 (507)
Q Consensus 309 ~~~d--~~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-----~- 378 (507)
+++. ..|.+|+............. .......+.++|+|+++.++++... +++|.+|+...++..... .
T Consensus 161 v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~--~~~V~v~~~~~~~~~~~~~~~~~~~ 238 (365)
T d1jofa_ 161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA--GNRICEYVIDPATHMPVYTHHSFPL 238 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT--TTEEEEEEECTTTCCEEEEEEEEES
T ss_pred EeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC--CCEEEEEEecCCCceEEEEeeeecc
Confidence 8883 78888887654211111111 1235678899999999888887764 899999998766432211 1
Q ss_pred --------------cCCCeEEEEECCCCCeEEEEeccC----CCeEEEEeCCCccEEEEe------eccccceeEEEECC
Q psy8285 379 --------------TDSQVTSILWSEQYRELVTSHGKQ----DCSLKMWEYPRLHLIEEL------KIHQERILSAVLSP 434 (507)
Q Consensus 379 --------------~~~~i~~~~~s~~~~~l~~~~g~~----d~~i~v~d~~~~~~~~~~------~~~~~~i~~~~~s~ 434 (507)
.......+.++|+|++|+++.... ...|..|++.....+... .........++++|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p 318 (365)
T d1jofa_ 239 IPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCP 318 (365)
T ss_dssp SCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECT
T ss_pred ccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecC
Confidence 001356789999999999853211 224777877643222211 11233457799998
Q ss_pred -CCCEEEEE-eCCCcEEEEecCCCC
Q psy8285 435 -DQTCVAAA-SADETISIWNCFPRD 457 (507)
Q Consensus 435 -~~~~l~s~-~~dg~i~iw~~~~~~ 457 (507)
+|++|+++ ..++.|.+|++....
T Consensus 319 ~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 319 WSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp TCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 78988766 467899999986543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=1.1e-09 Score=95.20 Aligned_cols=236 Identities=13% Similarity=0.052 Sum_probs=153.3
Q ss_pred cEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCC---eEEEEECCCCCcCceeeecCCCceEEEEEcCCCCE
Q psy8285 232 YIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGG---NILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRY 306 (507)
Q Consensus 232 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 306 (507)
.|.|.|.. |.....+..+...+...+| ||+.||...... .+.+.+..... ...+..+........|+|+|+.
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~ 96 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGSK 96 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSSE
T ss_pred EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc--eeEEeeeecccccceecCCCCe
Confidence 57777865 4444445556677888888 899998775443 46667776654 5566677788889999999999
Q ss_pred EEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeE
Q psy8285 307 LASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVT 384 (507)
Q Consensus 307 l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~ 384 (507)
++... . +...++...... .................+++++..++.+........|...++..+.............
T Consensus 97 i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~ 174 (269)
T d2hqsa1 97 LAFALSKTGSLNLYVMDLAS--GQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQ 174 (269)
T ss_dssp EEEEECTTSSCEEEEEETTT--CCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEE
T ss_pred eeEeeecCCccceeeccccc--ccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeeccccccc
Confidence 88876 2 444444333221 2333333355556677788888777776654223467777877766555444456678
Q ss_pred EEEECCCCCeEEEEeccCCCe--EEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeC---CCcEEEEecCCCCcc
Q psy8285 385 SILWSEQYRELVTSHGKQDCS--LKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA---DETISIWNCFPRDKK 459 (507)
Q Consensus 385 ~~~~s~~~~~l~~~~g~~d~~--i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~---dg~i~iw~~~~~~~~ 459 (507)
...|+|+++.++.. ....+. +.+.+...+.. .+..+........|||||+.|+..+. ...|+++++......
T Consensus 175 ~~~~spdg~~~~~~-~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~ 251 (269)
T d2hqsa1 175 DADVSSDGKFMVMV-SSNGGQQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA 251 (269)
T ss_dssp EEEECTTSSEEEEE-EECSSCEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE
T ss_pred ccccccccceeEEE-eecCCceeeeEeecccccc--eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence 88999999999985 233444 44455544433 33334556678899999999876553 346889999877665
Q ss_pred cceeecCCCcceEEee
Q psy8285 460 RKARQVGSGSSLEFAI 475 (507)
Q Consensus 460 ~~~~~~~~~~~~~~~~ 475 (507)
......+......|+|
T Consensus 252 ~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 252 RLPATDGQVKFPAWSP 267 (269)
T ss_dssp ECCCSSSEEEEEEECC
T ss_pred EEeCCCCcEEeEEeCC
Confidence 5444444444555655
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=9.6e-10 Score=95.67 Aligned_cols=213 Identities=15% Similarity=0.133 Sum_probs=135.6
Q ss_pred eeeeeeCCCC-EEEEE----cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEe--CCC
Q psy8285 168 TSGLDWGYHD-TLAVA----LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWH--EQE 240 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~----~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd--~~~ 240 (507)
+...+||||| .||.. ....+.+.+...+....... +........|+|+|+.++.....++...++. ...
T Consensus 41 ~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~ 116 (269)
T d2hqsa1 41 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS----FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS 116 (269)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC----CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT
T ss_pred eeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEee----eecccccceecCCCCeeeEeeecCCccceeeccccc
Confidence 4468999998 55543 23367888887777665554 6677889999999999988634444433333 222
Q ss_pred ceeEEEEeecCccEEEEEe--eCC-EEEEEecCCe--EEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-C-C
Q psy8285 241 ERLIQKLRTHMHQVIAMCW--NGN-LLSCGTIGGN--ILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-N-N 313 (507)
Q Consensus 241 ~~~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~ 313 (507)
....... ..........+ ++. .+++...++. |.+.++.... ...............|+|+++.++..+ + +
T Consensus 117 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 193 (269)
T d2hqsa1 117 GQIRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGG 193 (269)
T ss_dssp CCEEECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred ccceeee-eccccccccccccccccceecccccCCceEeeeeccccc--ceeeecccccccccccccccceeEEEeecCC
Confidence 2222222 22222223333 344 4445555554 5555655543 445555666778889999999988877 4 5
Q ss_pred cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECC
Q psy8285 314 TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSE 390 (507)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~ 390 (507)
...+|..... ........+........|+|||+.|+.+........|+++++..+...........+...+|+|
T Consensus 194 ~~~i~~~~~~---~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 194 QQHIAKQDLA---TGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 267 (269)
T ss_dssp CEEEEEEETT---TCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred ceeeeEeecc---cccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence 5555555443 2222333355667889999999988877654335679999998877666555557788899998
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.25 E-value=4.7e-09 Score=90.54 Aligned_cols=234 Identities=10% Similarity=-0.067 Sum_probs=142.8
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCce
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPT 286 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~ 286 (507)
-....+++.++|...++.....+.+..++...................+++ +++++++....+.+++++-.+.. ..
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~--~~ 91 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ--TV 91 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC--EE
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccce--ee
Confidence 346899999999877765356677777765543322222222223455666 57776666555555555443322 11
Q ss_pred eeecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEE
Q psy8285 287 AITREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRL 365 (507)
Q Consensus 287 ~~~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i 365 (507)
..........++++.++++++++-.. ..+..++.... ...............++++|++. ++++... ++.|..
T Consensus 92 ~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~i~~~~~g~-~~v~~~~--~~~i~~ 165 (260)
T d1rwia_ 92 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK---TQTVLPFTGLNDPDGVAVDNSGN-VYVTDTD--NNRVVK 165 (260)
T ss_dssp CCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCS---SCEECCCCSCCSCCEEEECTTCC-EEEEEGG--GTEEEE
T ss_pred eeeeeeeecccccccccceeEeeccccccccccccccc---eeeeeeecccCCcceeeecCCCC-Eeeeccc--cccccc
Confidence 12222356789999999988776553 77777776543 22221122234567899999885 5555544 789999
Q ss_pred EeCCCCCeeeee-ecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeC
Q psy8285 366 WNSMNGKEKCHV-KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 366 ~d~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 444 (507)
+|.......... ..-.....+++.++|+++++ ....+.|..++.............-.....|+++++|.++++-..
T Consensus 166 ~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vs--d~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~ 243 (260)
T d1rwia_ 166 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVT--EHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRG 243 (260)
T ss_dssp ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEE--ETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGG
T ss_pred cccccceeeeeeccccCCCccceeeeeeeeeee--ecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECC
Confidence 997765443322 22356889999999987777 666788888886544322221222345678999999987777666
Q ss_pred CCcEEEEe
Q psy8285 445 DETISIWN 452 (507)
Q Consensus 445 dg~i~iw~ 452 (507)
+++|+..+
T Consensus 244 ~~rI~~i~ 251 (260)
T d1rwia_ 244 NDRVVKLT 251 (260)
T ss_dssp GTEEEEEC
T ss_pred CCEEEEEe
Confidence 66555444
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.22 E-value=2.3e-08 Score=87.09 Aligned_cols=234 Identities=14% Similarity=0.165 Sum_probs=158.8
Q ss_pred ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeec------CccEEEEEe--e-CCEEEEE-ecCCeEEEEECC
Q psy8285 210 YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTH------MHQVIAMCW--N-GNLLSCG-TIGGNILHYDVR 279 (507)
Q Consensus 210 ~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~--~-~~~l~~~-~~dg~i~i~d~~ 279 (507)
....++++++++.+++- ..+..|++||.+ ++.+..+... ......+.+ + +..+++. +.++.|..++..
T Consensus 24 ~P~gvavd~dg~i~VaD-~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVAD-TNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp CEEEEEECTTCCEEEEE-GGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CccEEEEcCCCCEEEEE-CCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence 46899999999866665 678899999965 6666666321 112344555 2 3344433 344577777764
Q ss_pred CCCcCceee-ecCCCceEEEEEcCCCCEEEEEeC-CcEEEEEcCCCCCCCCeeee--cCCCCCeeEEEEccCCCcEEEEE
Q psy8285 280 THSDYPTAI-TREGDVVCGLKWSPNGRYLASGSN-NTVKIWDFRQLDAKRPQVNN--QCHLSAVKAIAWCPWEPTLLATG 355 (507)
Q Consensus 280 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~d-~~i~i~d~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~ 355 (507)
.. ....+ .........+++.++++++++... +.+.+++... +.+..+ ..+......+++.+++ .++++.
T Consensus 102 g~--~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g----~~~~~~g~~~~~~~~~~i~~d~~g-~i~v~d 174 (279)
T d1q7fa_ 102 GQ--FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG----NVLHKFGCSKHLEFPNGVVVNDKQ-EIFISD 174 (279)
T ss_dssp SC--EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS----CEEEEEECTTTCSSEEEEEECSSS-EEEEEE
T ss_pred cc--ceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCC----ceeecccccccccccceeeeccce-eEEeee
Confidence 32 22222 233456788999999988777664 7788887654 344443 3355677889999887 566665
Q ss_pred ccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecc--ccceeEE
Q psy8285 356 GGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIH--QERILSA 430 (507)
Q Consensus 356 ~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~--~~~i~~~ 430 (507)
.. .+.|++||. +++.+..+... .....+++.++|+.+++- ...++.|.+|+ .+++.+..+... ......+
T Consensus 175 ~~--~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad-~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~v 249 (279)
T d1q7fa_ 175 NR--AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIAD-NHNNFNLTIFT-QDGQLISALESKVKHAQCFDV 249 (279)
T ss_dssp GG--GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEE-CSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEE
T ss_pred cc--ccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEE-CCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEE
Confidence 54 889999996 56666666433 458899999999977662 22345799998 568877776432 2357889
Q ss_pred EECCCCCEEEEEeCCCcEEEEecCCCCc
Q psy8285 431 VLSPDQTCVAAASADETISIWNCFPRDK 458 (507)
Q Consensus 431 ~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 458 (507)
++.|+|.+++ ++.+..|++|+.....+
T Consensus 250 av~~dG~l~V-~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 250 ALMDDGSVVL-ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp EEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred EEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence 9999997554 56789999999987654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.21 E-value=1.4e-08 Score=89.86 Aligned_cols=237 Identities=7% Similarity=0.007 Sum_probs=153.4
Q ss_pred CceEEEEEccCCCeEEEEeCC-------CCcEEEEeCCCceeEEEEeec----CccEEEEEe--eCCEEEEEecCCeEEE
Q psy8285 209 AYISCVAWKPRTTDLAVTNTC-------TEYIDLWHEQEERLIQKLRTH----MHQVIAMCW--NGNLLSCGTIGGNILH 275 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~-------dg~i~iwd~~~~~~~~~~~~~----~~~v~~~~~--~~~~l~~~~~dg~i~i 275 (507)
.....++|.|+|+.+++. .. +|+|..||..++......... ......+.| +++.++++.....|..
T Consensus 18 ~g~EGpa~d~dG~ly~~~-~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~ 96 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVA-PEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEE-TTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred CCCeEeEEeCCCCEEEEE-CccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEE
Confidence 346778999999877765 32 467999998887654433221 123467888 5778888877778888
Q ss_pred EECCCCCcCceeeecCC---CceEEEEEcCCCCEEEEEeC----------------CcEEEEEcCCCCCCCCeeeecCCC
Q psy8285 276 YDVRTHSDYPTAITREG---DVVCGLKWSPNGRYLASGSN----------------NTVKIWDFRQLDAKRPQVNNQCHL 336 (507)
Q Consensus 276 ~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~d----------------~~i~i~d~~~~~~~~~~~~~~~~~ 336 (507)
++............... ...+.+++.++|++.++-.. +.|..++.. + .........
T Consensus 97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g----~~~~~~~~~ 171 (314)
T d1pjxa_ 97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G----QMIQVDTAF 171 (314)
T ss_dssp EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S----CEEEEEEEE
T ss_pred EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-C----ceeEeeCCc
Confidence 88876432111111111 13567899999998876421 233333332 1 122222233
Q ss_pred CCeeEEEEccCCC----cEEEEEccCCCCeEEEEeCCCCCeee------eeecC--CCeEEEEECCCCCeEEEEeccCCC
Q psy8285 337 SAVKAIAWCPWEP----TLLATGGGICDQTVRLWNSMNGKEKC------HVKTD--SQVTSILWSEQYRELVTSHGKQDC 404 (507)
Q Consensus 337 ~~v~~~~~~~~~~----~~~~~~~~~~d~~i~i~d~~~~~~~~------~~~~~--~~i~~~~~s~~~~~l~~~~g~~d~ 404 (507)
...+.++|+|++. .++++... .+.|..||+.....+. .+... .....+++.++|+..++ ....+
T Consensus 172 ~~pNGi~~~~d~d~~~~~lyv~d~~--~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa--~~~~g 247 (314)
T d1pjxa_ 172 QFPNGIAVRHMNDGRPYQLIVAETP--TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA--NWGSS 247 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETT--TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE--EETTT
T ss_pred ceeeeeEECCCCCcceeEEEEEeec--ccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEE--EcCCC
Confidence 4457899999764 46665543 8899999876443222 11111 23678999999998777 45678
Q ss_pred eEEEEeCCCccEEEEeeccccceeEEEECCCCCEE-EEEeCCCcEEEEecCC
Q psy8285 405 SLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCV-AAASADETISIWNCFP 455 (507)
Q Consensus 405 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~s~~~dg~i~iw~~~~ 455 (507)
.|.+||.+.++.+..+..+....++++|.||++.| ++.+.+|.|...++..
T Consensus 248 ~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 248 HIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 99999988887777776666778999999998755 5666778887777654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.19 E-value=1.6e-08 Score=89.22 Aligned_cols=228 Identities=11% Similarity=0.067 Sum_probs=151.9
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCce
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPT 286 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~ 286 (507)
..+..+++.|||+.+++. ..+++|..|+... + ...+......+.+++| +++++++...++.+..++.........
T Consensus 28 ~~~e~iAv~pdG~l~vt~-~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTN-HEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp CCEEEEEECTTSCEEEEE-TTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcCCEEECCCCCEEEEe-CCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee
Confidence 357899999999988877 8899998888553 3 3445556678889999 788888888888888888765442222
Q ss_pred eee--cCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCC-------CeeeecCCCCCeeEEEEccCCCcEEEEEc
Q psy8285 287 AIT--REGDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKR-------PQVNNQCHLSAVKAIAWCPWEPTLLATGG 356 (507)
Q Consensus 287 ~~~--~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 356 (507)
.+. ........+.+.++++++++.+ ++.+..+|...+.... ..............+.+. +..++++..
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~ 182 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT 182 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence 222 3445678999999998887766 4888888876541000 000001122344566664 446777666
Q ss_pred cCCCCeEEEEeCCCCCeee---eeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCcc-EEEEeeccccceeEEEE
Q psy8285 357 GICDQTVRLWNSMNGKEKC---HVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLH-LIEELKIHQERILSAVL 432 (507)
Q Consensus 357 ~~~d~~i~i~d~~~~~~~~---~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~-~~~~~~~~~~~i~~~~~ 432 (507)
. .+.|..++........ .+........++++++|+++++ ...++.|..++..... .+......-...++++|
T Consensus 183 ~--~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va--~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vaf 258 (302)
T d2p4oa1 183 E--KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA--THIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAF 258 (302)
T ss_dssp T--TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE--CBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEE
T ss_pred C--CCeEEeccccccccccccccccCCCCCcceEECCCCCEEEE--EcCCCcEEEECCCCCEEEEEecCCCCCCceEEEE
Confidence 4 8899999876654322 2223345677999999997777 5678889999865322 23333333455789999
Q ss_pred ---CCCCCEEEEEeCC
Q psy8285 433 ---SPDQTCVAAASAD 445 (507)
Q Consensus 433 ---s~~~~~l~s~~~d 445 (507)
++|++.|+.++..
T Consensus 259 g~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 259 GQTEGDCTAIYVVTNG 274 (302)
T ss_dssp CCSTTTTTEEEEEECT
T ss_pred cCCCCCCCEEEEECCC
Confidence 6788888766544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=1.6e-08 Score=94.65 Aligned_cols=273 Identities=12% Similarity=0.063 Sum_probs=159.5
Q ss_pred CCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeec-CccE--------
Q psy8285 184 DTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTH-MHQV-------- 254 (507)
Q Consensus 184 ~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v-------- 254 (507)
.+.+.++|+.+++...+..... ....+....|||+|+.+|.. .++.|.+.+..++..++..... ...+
T Consensus 90 ~~~~~i~d~~~~~~~~l~~~~~-~~~~l~~~~wSPDG~~iafv--~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~v 166 (465)
T d1xfda1 90 TGYYVLSKIPHGDPQSLDPPEV-SNAKLQYAGWGPKGQQLIFI--FENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWL 166 (465)
T ss_dssp CSEEEEEESSSCCCEECCCTTC-CSCCCSBCCBCSSTTCEEEE--ETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHH
T ss_pred cccEEEEEccCCceeeccCccC-CccccceeeeccCCceEEEE--ecceEEEEecCCCceEEEecccCcceeeccccchh
Confidence 5689999999988766654443 45567778999999999988 5788999998877665544321 1111
Q ss_pred ---------EEEEe--eCCEEEEEecC-C---------------------------------eEEEEECCCCCcCceee-
Q psy8285 255 ---------IAMCW--NGNLLSCGTIG-G---------------------------------NILHYDVRTHSDYPTAI- 288 (507)
Q Consensus 255 ---------~~~~~--~~~~l~~~~~d-g---------------------------------~i~i~d~~~~~~~~~~~- 288 (507)
.++-| ||+.||....| . .+.++|+.++.......
T Consensus 167 yeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~ 246 (465)
T d1xfda1 167 YEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMP 246 (465)
T ss_dssp HHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCC
T ss_pred hhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEec
Confidence 35556 78888876422 1 24455554433111111
Q ss_pred ----ecCCCceEEEEEcCCCCEEEEEeC-----CcEEEEEcCCCCCCCCeeeecC-CCCC----eeEEEEccCCCcEEEE
Q psy8285 289 ----TREGDVVCGLKWSPNGRYLASGSN-----NTVKIWDFRQLDAKRPQVNNQC-HLSA----VKAIAWCPWEPTLLAT 354 (507)
Q Consensus 289 ----~~~~~~v~~~~~~~~~~~l~~~~d-----~~i~i~d~~~~~~~~~~~~~~~-~~~~----v~~~~~~~~~~~~~~~ 354 (507)
......+..+.|+|++++++...+ ..+.++|..++ +....... ..+. -....|+|+|+.++..
T Consensus 247 ~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg---~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi 323 (465)
T d1xfda1 247 PDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG---VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (465)
T ss_dssp CCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC---CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred cCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCC---cEEEEEEEcCCceEeccCCceeEccCCCeeEEE
Confidence 112224678899999987776542 46888888877 33322221 2222 2356899999876443
Q ss_pred EccCCC--CeEEEEeCC------CCCeeeeeecC-CCeEEE-EECCCCCeEEEEeccCC--Ce--EEEEeCCCccEEEEe
Q psy8285 355 GGGICD--QTVRLWNSM------NGKEKCHVKTD-SQVTSI-LWSEQYRELVTSHGKQD--CS--LKMWEYPRLHLIEEL 420 (507)
Q Consensus 355 ~~~~~d--~~i~i~d~~------~~~~~~~~~~~-~~i~~~-~~s~~~~~l~~~~g~~d--~~--i~v~d~~~~~~~~~~ 420 (507)
.....+ +.+..+++. .++.+..+... -.|..+ .|+++++.|... +..+ +. ++-.++........+
T Consensus 324 ~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~-a~~~~p~~~hly~v~l~g~~~~~~l 402 (465)
T d1xfda1 324 RAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFL-STEDLPRRRQLYSANTVGNFNRQCL 402 (465)
T ss_dssp EEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEE-ESSSCTTCCEEEEECSSTTCCCBCS
T ss_pred EeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEE-EeCCCCCceEEEEEECCCCCcceee
Confidence 111112 234443321 23333334333 356664 689998888664 3333 23 444444433322222
Q ss_pred ---eccccceeEEEECCCCCEEEEEeC---CCcEEEEecCCCCccccee
Q psy8285 421 ---KIHQERILSAVLSPDQTCVAAASA---DETISIWNCFPRDKKRKAR 463 (507)
Q Consensus 421 ---~~~~~~i~~~~~s~~~~~l~s~~~---dg~i~iw~~~~~~~~~~~~ 463 (507)
........++.|||++++++.... --.+.+++..+++.+..++
T Consensus 403 t~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 403 SCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE 451 (465)
T ss_dssp STTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence 123445778999999999874433 2457888877777666554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.16 E-value=1.2e-08 Score=92.61 Aligned_cols=243 Identities=8% Similarity=-0.019 Sum_probs=144.1
Q ss_pred eeeeeCCCC-EEEEEcCCeEEEEECCC-CceeEEEecCCCCCCceEEEEEccCCCeEEE--EeCCCCcEEEEeCCCc-ee
Q psy8285 169 SGLDWGYHD-TLAVALDTSVYTWNTKT-NKTQLLVEYPTYDNAYISCVAWKPRTTDLAV--TNTCTEYIDLWHEQEE-RL 243 (507)
Q Consensus 169 ~~~~~s~~~-~~~~~~~~~i~iw~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~~dg~i~iwd~~~~-~~ 243 (507)
..|++++++ .+.+...+.+..|.+.. +......... .......+.++++++.+++ +....+.+..+.+... ..
T Consensus 43 s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~ 120 (365)
T d1jofa_ 43 SWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHP--IGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGY 120 (365)
T ss_dssp SEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEE--CCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCE
T ss_pred CEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeec--CCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCc
Confidence 358899987 55455566788777654 3333222221 2334567788888875433 3223456665543221 11
Q ss_pred E------------EEE----eecCccEEEEEe--eCCEEEEEec-CCeEEEEECCCCCcCc--e--eeecCCCceEEEEE
Q psy8285 244 I------------QKL----RTHMHQVIAMCW--NGNLLSCGTI-GGNILHYDVRTHSDYP--T--AITREGDVVCGLKW 300 (507)
Q Consensus 244 ~------------~~~----~~~~~~v~~~~~--~~~~l~~~~~-dg~i~i~d~~~~~~~~--~--~~~~~~~~v~~~~~ 300 (507)
. ... ......+.++.| ++++++++.. ...|.+|+........ . .........+.++|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f 200 (365)
T d1jofa_ 121 GNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAM 200 (365)
T ss_dssp EEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEE
T ss_pred ceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEE
Confidence 0 001 112234678888 7887777764 4578888866433111 1 11223456889999
Q ss_pred cCCCCEEEEEe--CCcEEEEEcCCCCCCCCe--eee--------------cCCCCCeeEEEEccCCCcEEEEEccC---C
Q psy8285 301 SPNGRYLASGS--NNTVKIWDFRQLDAKRPQ--VNN--------------QCHLSAVKAIAWCPWEPTLLATGGGI---C 359 (507)
Q Consensus 301 ~~~~~~l~~~~--d~~i~i~d~~~~~~~~~~--~~~--------------~~~~~~v~~~~~~~~~~~~~~~~~~~---~ 359 (507)
+|+++++.+.. +++|.+|++......... ... ..+......+.++|+|++++++..+. .
T Consensus 201 ~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~ 280 (365)
T d1jofa_ 201 HPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFEL 280 (365)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTS
T ss_pred CCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCcc
Confidence 99999988877 399999999765211100 000 01222356789999998888876431 1
Q ss_pred CCeEEEEeCCCCCeeeee-------ecCCCeEEEEECC-CCCeEEEEeccCCCeEEEEeCCCc
Q psy8285 360 DQTVRLWNSMNGKEKCHV-------KTDSQVTSILWSE-QYRELVTSHGKQDCSLKMWEYPRL 414 (507)
Q Consensus 360 d~~i~i~d~~~~~~~~~~-------~~~~~i~~~~~s~-~~~~l~~~~g~~d~~i~v~d~~~~ 414 (507)
...|..|++.....+... ........++++| +|++|+++ +..++.|.+|++...
T Consensus 281 ~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va-~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 281 QGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT-DDQEGWLEIYRWKDE 342 (365)
T ss_dssp CCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE-CSSSCEEEEEEEETT
T ss_pred ceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEE-eCCCCeEEEEEEeCC
Confidence 234777877554322211 1124567899998 79988886 677899999987543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.14 E-value=8e-08 Score=85.26 Aligned_cols=224 Identities=12% Similarity=0.061 Sum_probs=149.9
Q ss_pred CceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecC----CeEEEEECCCCC
Q psy8285 209 AYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIG----GNILHYDVRTHS 282 (507)
Q Consensus 209 ~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d----g~i~i~d~~~~~ 282 (507)
..+..++|.++|+..++- ...+.|..|+..+++....+.........+++ +|+++++...+ +.+...+.....
T Consensus 40 ~~lEG~~~D~~G~Ly~~D-~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLD-VFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp CCEEEEEECTTSCEEEEE-TTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred cCcEeCEECCCCCEEEEE-CCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence 345789999999866655 78899999998877666666556667788888 67777665432 345555555433
Q ss_pred cCceeeec---CCCceEEEEEcCCCCEEEEEeC-------CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEE
Q psy8285 283 DYPTAITR---EGDVVCGLKWSPNGRYLASGSN-------NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLL 352 (507)
Q Consensus 283 ~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 352 (507)
...... .......+++.++|++.++... +.+..++... ..+..+...-...+.++|+|+++.++
T Consensus 119 --~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg----~~~~~~~~~~~~pnGia~s~dg~~ly 192 (319)
T d2dg1a1 119 --LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF----RTVTPIIQNISVANGIALSTDEKVLW 192 (319)
T ss_dssp --CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS----CCEEEEEEEESSEEEEEECTTSSEEE
T ss_pred --eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc----ceeEEEeeccceeeeeeeccccceEE
Confidence 222221 2345778999999998776432 2355555443 23333333334567899999998787
Q ss_pred EEEccCCCCeEEEEeCCCC-Ceeeee--------ecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec-
Q psy8285 353 ATGGGICDQTVRLWNSMNG-KEKCHV--------KTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI- 422 (507)
Q Consensus 353 ~~~~~~~d~~i~i~d~~~~-~~~~~~--------~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~- 422 (507)
++... .+.|..||+... ...... ........+++.++|+..++ ....+.|.+|| ..++.+.++..
T Consensus 193 vad~~--~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va--~~~~g~V~~~~-p~G~~l~~i~~P 267 (319)
T d2dg1a1 193 VTETT--ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVA--MYGQGRVLVFN-KRGYPIGQILIP 267 (319)
T ss_dssp EEEGG--GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEE--EETTTEEEEEC-TTSCEEEEEECT
T ss_pred Eeccc--CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEE--EcCCCEEEEEC-CCCcEEEEEeCC
Confidence 77664 899999997643 221111 11234678999999997777 56789999999 57888877752
Q ss_pred -----cccceeEEEECCCCCEEEEEeC
Q psy8285 423 -----HQERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 423 -----~~~~i~~~~~s~~~~~l~s~~~ 444 (507)
+...+++++|.+++..+++.+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 268 GRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp TGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 3345789999998877766543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.07 E-value=8e-08 Score=82.56 Aligned_cols=229 Identities=10% Similarity=0.011 Sum_probs=141.0
Q ss_pred eeeeeeCCCC-EEEEE--cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeE
Q psy8285 168 TSGLDWGYHD-TLAVA--LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLI 244 (507)
Q Consensus 168 i~~~~~s~~~-~~~~~--~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~ 244 (507)
-..+++.+++ ++.+. ..+.+..++...... ...... .......+++++++..+++. ...+.+++++-.+...+
T Consensus 16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~-~~~~~~--~~~~p~gvav~~~g~i~v~d-~~~~~i~~~~~~~~~~~ 91 (260)
T d1rwia_ 16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFN--GLYQPQGLAVDGAGTVYVTD-FNNRVVTLAAGSNNQTV 91 (260)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEEC----CE-EECCCC--SCCSCCCEEECTTCCEEEEE-TTTEEEEECTTCSCCEE
T ss_pred CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceE-EEeccC--CccCceEEEEcCCCCEEEee-eeeceeeeeeeccceee
Confidence 3468888887 44332 446677666544332 222222 23446788999998766655 66667777665554443
Q ss_pred EEEeecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-CCcEEEEEcC
Q psy8285 245 QKLRTHMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-NNTVKIWDFR 321 (507)
Q Consensus 245 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~ 321 (507)
.... ......++++ +++++++-.....+..++...... .............++++++++++++.. ++.|..+|..
T Consensus 92 ~~~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~ 169 (260)
T d1rwia_ 92 LPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 169 (260)
T ss_dssp CCCC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC-EECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred eeee-eeeecccccccccceeEeecccccccccccccccee-eeeeecccCCcceeeecCCCCEeeeccccccccccccc
Confidence 2222 2345678887 567777666667777777665431 111112234457899999999777766 4889999877
Q ss_pred CCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeec-C-CCeEEEEECCCCCeEEEEe
Q psy8285 322 QLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKT-D-SQVTSILWSEQYRELVTSH 399 (507)
Q Consensus 322 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~-~~i~~~~~s~~~~~l~~~~ 399 (507)
.. ...............+++.++| .++++... .+.|..++..... ...+.. . .....++++++|..+++
T Consensus 170 ~~---~~~~~~~~~~~~p~gi~~d~~g-~l~vsd~~--~~~i~~~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~va-- 240 (260)
T d1rwia_ 170 SN---NQVVLPFTDITAPWGIAVDEAG-TVYVTEHN--TNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVA-- 240 (260)
T ss_dssp TC---CEEECCCSSCCSEEEEEECTTC-CEEEEETT--TTEEEEECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEE--
T ss_pred cc---eeeeeeccccCCCccceeeeee-eeeeeecC--CCEEEEEeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEE--
Confidence 54 2222222345667899999988 57776654 7888888865443 222222 2 56789999999987666
Q ss_pred ccCCCeEEEEeC
Q psy8285 400 GKQDCSLKMWEY 411 (507)
Q Consensus 400 g~~d~~i~v~d~ 411 (507)
-..++.|+.++.
T Consensus 241 d~~~~rI~~i~~ 252 (260)
T d1rwia_ 241 DRGNDRVVKLTS 252 (260)
T ss_dssp EGGGTEEEEECC
T ss_pred ECCCCEEEEEeC
Confidence 556677776654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.05 E-value=2.1e-07 Score=80.82 Aligned_cols=234 Identities=9% Similarity=0.146 Sum_probs=152.2
Q ss_pred eeeeeCCCC-EEEE-EcCCeEEEEECCCCceeEEEecCCC---CCCceEEEEEccCC-CeEEEEeCCCCcEEEEeCCCce
Q psy8285 169 SGLDWGYHD-TLAV-ALDTSVYTWNTKTNKTQLLVEYPTY---DNAYISCVAWKPRT-TDLAVTNTCTEYIDLWHEQEER 242 (507)
Q Consensus 169 ~~~~~s~~~-~~~~-~~~~~i~iw~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~-~~l~~~~~~dg~i~iwd~~~~~ 242 (507)
..++.++++ ++.+ ..++.|++||.+ ++....+...+. .......+++.++. ..+++..+.++.|..++. .++
T Consensus 26 ~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~ 103 (279)
T d1q7fa_ 26 SGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQ 103 (279)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSC
T ss_pred cEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-ccc
Confidence 358888877 4444 367899999975 555443322110 12234556666554 444444345567888875 455
Q ss_pred eEEEEee-cCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceee--ecCCCceEEEEEcCCCCEEEEEeC-CcEE
Q psy8285 243 LIQKLRT-HMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAI--TREGDVVCGLKWSPNGRYLASGSN-NTVK 316 (507)
Q Consensus 243 ~~~~~~~-~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~d-~~i~ 316 (507)
....+.. .......++. ++.++++....+.+.+++.... ....+ ..+......+++.++++++++... +.|+
T Consensus 104 ~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~--~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~ 181 (279)
T d1q7fa_ 104 FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN--VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK 181 (279)
T ss_dssp EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC--EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred ceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc--eeecccccccccccceeeeccceeEEeeecccccee
Confidence 5555532 3445567777 5777777777778888886543 22222 334566788999999988777765 9999
Q ss_pred EEEcCCCCCCCCeeeec--CCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECCC
Q psy8285 317 IWDFRQLDAKRPQVNNQ--CHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSEQ 391 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~~ 391 (507)
+||... +.+..+. +.......+++.++|+ ++++... .++.|.+|+ .+++.+..+... .....+++.|+
T Consensus 182 ~~d~~G----~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~-~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~d 254 (279)
T d1q7fa_ 182 VFNYEG----QYLRQIGGEGITNYPIGVGINSNGE-ILIADNH-NNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDD 254 (279)
T ss_dssp EEETTC----CEEEEESCTTTSCSEEEEEECTTCC-EEEEECS-SSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETT
T ss_pred eeecCC----ceeeeecccccccCCcccccccCCe-EEEEECC-CCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCC
Confidence 999764 3444442 3445678999999995 6655431 255799998 568877776543 46889999999
Q ss_pred CCeEEEEeccCCCeEEEEeCCCccE
Q psy8285 392 YRELVTSHGKQDCSLKMWEYPRLHL 416 (507)
Q Consensus 392 ~~~l~~~~g~~d~~i~v~d~~~~~~ 416 (507)
|.++++ ..++.|++|......+
T Consensus 255 G~l~V~---~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 255 GSVVLA---SKDYRLYIYRYVQLAP 276 (279)
T ss_dssp TEEEEE---ETTTEEEEEECSCCCC
T ss_pred CcEEEE---eCCCeEEEEEeeeecC
Confidence 975554 3588999999876543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.99 E-value=2.4e-07 Score=81.77 Aligned_cols=237 Identities=11% Similarity=0.100 Sum_probs=145.3
Q ss_pred eeeeeCCCC-EEEEEc--------CCeEEEEECCCCceeEEEecCC-CCCCceEEEEEccCCCeEEEEeCCCCcEEEEeC
Q psy8285 169 SGLDWGYHD-TLAVAL--------DTSVYTWNTKTNKTQLLVEYPT-YDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHE 238 (507)
Q Consensus 169 ~~~~~s~~~-~~~~~~--------~~~i~iw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~ 238 (507)
..++|.+++ ++.+.. +++|..||..+++......... ........++|.+++..++++ .....+..++.
T Consensus 21 EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~va-d~~~~i~~~~~ 99 (314)
T d1pjxa_ 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRLGLLVVQT 99 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTTEEEEEET
T ss_pred eEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEE-ECCCeEEEEeC
Confidence 467888988 555432 4679999998877544332111 012335789999999988888 66677888887
Q ss_pred CCceeEEEEeecC----ccEEEEEe--eCCEEEEEec---------------CCeEEEEECCCCCcCceeeecCCCceEE
Q psy8285 239 QEERLIQKLRTHM----HQVIAMCW--NGNLLSCGTI---------------GGNILHYDVRTHSDYPTAITREGDVVCG 297 (507)
Q Consensus 239 ~~~~~~~~~~~~~----~~v~~~~~--~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 297 (507)
............. .....+.+ +|++.++-.. .|.|..++... + .......-..-+.
T Consensus 100 ~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~--~~~~~~~~~~pNG 176 (314)
T d1pjxa_ 100 DGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-Q--MIQVDTAFQFPNG 176 (314)
T ss_dssp TSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-C--EEEEEEEESSEEE
T ss_pred CCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-c--eeEeeCCcceeee
Confidence 6543322111111 12456677 4666555321 23344444332 1 1122222233467
Q ss_pred EEEcCCCC----EEEEEe--CCcEEEEEcCCCCCCCC---eeeecC-CCCCeeEEEEccCCCcEEEEEccCCCCeEEEEe
Q psy8285 298 LKWSPNGR----YLASGS--NNTVKIWDFRQLDAKRP---QVNNQC-HLSAVKAIAWCPWEPTLLATGGGICDQTVRLWN 367 (507)
Q Consensus 298 ~~~~~~~~----~l~~~~--d~~i~i~d~~~~~~~~~---~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d 367 (507)
++|+|++. .|+++. .+.|..||+........ ...+.. .......+++.++|+ ++++..+ .+.|.+||
T Consensus 177 i~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~--~g~I~~~d 253 (314)
T d1pjxa_ 177 IAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWG--SSHIEVFG 253 (314)
T ss_dssp EEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEET--TTEEEEEC
T ss_pred eEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc-EEEEEcC--CCEEEEEe
Confidence 89998764 455554 48899998765411111 111111 223456899999995 5554443 89999999
Q ss_pred CCCCCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCC
Q psy8285 368 SMNGKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPR 413 (507)
Q Consensus 368 ~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~ 413 (507)
.+.++.+..+..+ ...++++|.|+++.|+++ .+.+|.|..+++..
T Consensus 254 p~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt-~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 254 PDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT-EHENNAVWKFEWQR 299 (314)
T ss_dssp TTCBSCSEEEECSSSCEEEEEECTTSSEEEEE-ETTTTEEEEEECSS
T ss_pred CCCCEEEEEEECCCCCEEEEEEeCCCCEEEEE-ECCCCcEEEEECCC
Confidence 9888877777665 578999999999877665 56788898888753
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=8.2e-08 Score=89.78 Aligned_cols=281 Identities=13% Similarity=0.093 Sum_probs=162.9
Q ss_pred eeeCCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEe--------CCCCcEEEEeCCCc
Q psy8285 171 LDWGYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTN--------TCTEYIDLWHEQEE 241 (507)
Q Consensus 171 ~~~s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~~dg~i~iwd~~~~ 241 (507)
..|.+++ ++.-..+|.|.+||+.+++...+..........+....||||+++++... +..+.+.++|+.++
T Consensus 22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 22 AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred CEEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence 4677776 44345678999999998887666654332334677889999999988762 23568899999987
Q ss_pred eeEEEEe--ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCc-----------------eEEEEE
Q psy8285 242 RLIQKLR--THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDV-----------------VCGLKW 300 (507)
Q Consensus 242 ~~~~~~~--~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----------------v~~~~~ 300 (507)
+...... .....+....| ||+.||... ++.|.+.+..++........+.... -..+-|
T Consensus 102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~W 180 (465)
T d1xfda1 102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW 180 (465)
T ss_dssp CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE
T ss_pred ceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEE
Confidence 6544322 22333444555 788888876 6788888887654222222221111 146779
Q ss_pred cCCCCEEEEEe-C-CcEEEEEcC---------------------------------CCCCCCCeee-----ecCCCCCee
Q psy8285 301 SPNGRYLASGS-N-NTVKIWDFR---------------------------------QLDAKRPQVN-----NQCHLSAVK 340 (507)
Q Consensus 301 ~~~~~~l~~~~-d-~~i~i~d~~---------------------------------~~~~~~~~~~-----~~~~~~~v~ 340 (507)
||||+.||... | ..|..+.+. .+. ..... .......+.
T Consensus 181 SPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~--~~~~~~~~~~~~~~~~y~~ 258 (465)
T d1xfda1 181 SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT--HDLEMMPPDDPRMREYYIT 258 (465)
T ss_dssp CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC--CCEECCCCCCGGGSSEEEE
T ss_pred CCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCc--EEEEEeccCcCccccceee
Confidence 99999999876 4 555444432 110 00000 001122367
Q ss_pred EEEEccCCCcEEEEEcc-CCCCeEEEEeCCCCCeeeeeecC--CC----eEEEEECCCCCeEEEEe-ccCCC--eEEEEe
Q psy8285 341 AIAWCPWEPTLLATGGG-ICDQTVRLWNSMNGKEKCHVKTD--SQ----VTSILWSEQYRELVTSH-GKQDC--SLKMWE 410 (507)
Q Consensus 341 ~~~~~~~~~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~--~~----i~~~~~s~~~~~l~~~~-g~~d~--~i~v~d 410 (507)
.+.|+|+++.++..... .....+.++|..++++...+... .. -....|+|+|+.++... ...+| .++.++
T Consensus 259 ~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~ 338 (465)
T d1xfda1 259 MVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHIT 338 (465)
T ss_dssp EEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEE
T ss_pred eeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEE
Confidence 78999988543333322 11236888999999876554322 22 23568999999654321 11222 344443
Q ss_pred CC------CccEEEEeeccccceeEE-EECCCCCEEE-EEeCC--CcEEEEecC
Q psy8285 411 YP------RLHLIEELKIHQERILSA-VLSPDQTCVA-AASAD--ETISIWNCF 454 (507)
Q Consensus 411 ~~------~~~~~~~~~~~~~~i~~~-~~s~~~~~l~-s~~~d--g~i~iw~~~ 454 (507)
+. .++.+..+....-.|..+ .|+++++.++ ++..+ +.-++|.+.
T Consensus 339 ~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~ 392 (465)
T d1xfda1 339 VSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (465)
T ss_dssp EECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred eccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEE
Confidence 21 233344444444456665 6888877664 44433 334566554
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.93 E-value=2.3e-07 Score=81.59 Aligned_cols=220 Identities=10% Similarity=0.007 Sum_probs=140.0
Q ss_pred cceeeeeeCCCC-EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce-
Q psy8285 166 FYTSGLDWGYHD-TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER- 242 (507)
Q Consensus 166 ~~i~~~~~s~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~- 242 (507)
.++..++++||+ ++++. .+++|+.++.. ++...... ....+.+++|.++|+.+++. ..++.+..++.....
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~----~~~~~~gla~~~dG~l~v~~-~~~~~~~~~~~~~~~~ 101 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHAT----VEGKVSGLAFTSNGDLVATG-WNADSIPVVSLVKSDG 101 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEE----CSSEEEEEEECTTSCEEEEE-ECTTSCEEEEEECTTS
T ss_pred CCcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEc----CCCCcceEEEcCCCCeEEEe-cCCceEEEEEeccccc
Confidence 357789999998 55554 68899999865 44444444 45679999999999987777 777788777764332
Q ss_pred eEEEEe--ecCccEEEEEe--eCCEEEEEecCCeEEEEECCCCCcCceee---------ecCCCceEEEEEcCCCCEEEE
Q psy8285 243 LIQKLR--THMHQVIAMCW--NGNLLSCGTIGGNILHYDVRTHSDYPTAI---------TREGDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 243 ~~~~~~--~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~l~~ 309 (507)
....+. ........+.+ +++++++.+.++.+..++........... .........+.+. +..++.
T Consensus 102 ~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~ 179 (302)
T d2p4oa1 102 TVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYV 179 (302)
T ss_dssp CEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEE
T ss_pred ceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceee
Confidence 122222 23445678887 67777777788888888887653111111 1112234556665 445555
Q ss_pred Ee--CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeee--ecC-CCeE
Q psy8285 310 GS--NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHV--KTD-SQVT 384 (507)
Q Consensus 310 ~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~--~~~-~~i~ 384 (507)
+. .+.|..++.............. .......+++.++|. ++++... ++.|..++.. ++..... ... ...+
T Consensus 180 ~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~-l~va~~~--~~~V~~i~p~-G~~~~~~~~~~~~~~pt 254 (302)
T d2p4oa1 180 SNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGN-LYGATHI--YNSVVRIAPD-RSTTIIAQAEQGVIGST 254 (302)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCC-EEEECBT--TCCEEEECTT-CCEEEEECGGGTCTTEE
T ss_pred ecCCCCeEEecccccccccccccccc-CCCCCcceEECCCCC-EEEEEcC--CCcEEEECCC-CCEEEEEecCCCCCCce
Confidence 44 4889888887653222222222 334567899999995 5555443 7889999865 4433222 222 5689
Q ss_pred EEEE---CCCCCeEEEE
Q psy8285 385 SILW---SEQYRELVTS 398 (507)
Q Consensus 385 ~~~~---s~~~~~l~~~ 398 (507)
+++| ++|++.|+++
T Consensus 255 ~vafg~~~~D~~~Lyvt 271 (302)
T d2p4oa1 255 AVAFGQTEGDCTAIYVV 271 (302)
T ss_dssp EEEECCSTTTTTEEEEE
T ss_pred EEEEcCCCCCCCEEEEE
Confidence 9999 6788888764
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.90 E-value=5.4e-06 Score=73.09 Aligned_cols=223 Identities=12% Similarity=0.076 Sum_probs=139.9
Q ss_pred cceeeeeeCCCC-EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCC----CCcEEEEeCC
Q psy8285 166 FYTSGLDWGYHD-TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTC----TEYIDLWHEQ 239 (507)
Q Consensus 166 ~~i~~~~~s~~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----dg~i~iwd~~ 239 (507)
+.+..++|.+++ ++.+. ..+.|+.|+..+++......- .......+++.++|+.+++. .. .+.+...+..
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~---~~~~p~gla~~~dG~l~va~-~~~~~~~~~i~~~~~~ 115 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS---HKANPAAIKIHKDGRLFVCY-LGDFKSTGGIFAATEN 115 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC---SSSSEEEEEECTTSCEEEEE-CTTSSSCCEEEEECTT
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeC---CCCCeeEEEECCCCCEEEEe-cCCCccceeEEEEcCC
Confidence 345679999987 55544 788999999887765444322 44568899999999877765 32 2345555655
Q ss_pred CceeEEEEee--cCccEEEEEe--eCCEEEEEec------CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEE
Q psy8285 240 EERLIQKLRT--HMHQVIAMCW--NGNLLSCGTI------GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLAS 309 (507)
Q Consensus 240 ~~~~~~~~~~--~~~~v~~~~~--~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 309 (507)
.......... .......+.+ +|++.++... .+.+..++..... ...+...-...+.++|+||++.|+.
T Consensus 116 ~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~--~~~~~~~~~~pnGia~s~dg~~lyv 193 (319)
T d2dg1a1 116 GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALSTDEKVLWV 193 (319)
T ss_dssp SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECTTSSEEEE
T ss_pred CceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccce--eEEEeeccceeeeeeeccccceEEE
Confidence 5544443332 2234566777 5765555322 1235555544322 2222223334678999999998776
Q ss_pred Ee--CCcEEEEEcCCCCCCC-Ce----eeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC--
Q psy8285 310 GS--NNTVKIWDFRQLDAKR-PQ----VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-- 380 (507)
Q Consensus 310 ~~--d~~i~i~d~~~~~~~~-~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-- 380 (507)
+. .+.|..||+....... .. ............+++.++|+ ++++..+ .+.|.+||. .++.+..+...
T Consensus 194 ad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~-l~Va~~~--~g~V~~~~p-~G~~l~~i~~P~~ 269 (319)
T d2dg1a1 194 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYG--QGRVLVFNK-RGYPIGQILIPGR 269 (319)
T ss_dssp EEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEET--TTEEEEECT-TSCEEEEEECTTG
T ss_pred ecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC-EEEEEcC--CCEEEEECC-CCcEEEEEeCCCc
Confidence 66 4999999987531110 00 01111123356899999995 5555444 899999995 78888877643
Q ss_pred -----CCeEEEEECCCCCeEEEE
Q psy8285 381 -----SQVTSILWSEQYRELVTS 398 (507)
Q Consensus 381 -----~~i~~~~~s~~~~~l~~~ 398 (507)
..+++++|.|++..++++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~t 292 (319)
T d2dg1a1 270 DEGHMLRSTHPQFIPGTNQLIIC 292 (319)
T ss_dssp GGTCSCBCCEEEECTTSCEEEEE
T ss_pred CCCcCceeeeEEEeCCCCEEEEE
Confidence 247899999988877775
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.83 E-value=6.1e-06 Score=71.76 Aligned_cols=217 Identities=9% Similarity=0.022 Sum_probs=145.0
Q ss_pred EEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeec
Q psy8285 212 SCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITR 290 (507)
Q Consensus 212 ~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 290 (507)
.+..|.+....|...--..+.|..||..+++.. .+ .....+.++.+ ....|+.++.+ .+.++|..+++. ..+..
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~-~~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~--~~l~~ 95 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VH-ALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVL--TLHAE 95 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EE-ECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCE--EEEEC
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EE-ECCCCcEEEEEecCCCEEEEEeC-ccEEeeccccee--eEEee
Confidence 456788766666655246788999999887643 22 23456778887 33344445554 588999988752 22211
Q ss_pred -----CCCceEEEEEcCCCCEEEEEe-C----CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC
Q psy8285 291 -----EGDVVCGLKWSPNGRYLASGS-N----NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD 360 (507)
Q Consensus 291 -----~~~~v~~~~~~~~~~~l~~~~-d----~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d 360 (507)
....++.+.+.|+|++.++.. + +.-.+|.+..+ +. ............+.|+++++.++++.+. .
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g---~~-~~~~~~~~~~Ng~~~s~d~~~l~~~dt~--~ 169 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG---KV-TKLFADISIPNSICFSPDGTTGYFVDTK--V 169 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT---EE-EEEEEEESSEEEEEECTTSCEEEEEETT--T
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCC---cE-EEEeeccCCcceeeecCCCceEEEeecc--c
Confidence 123578899999999877654 1 45567777655 22 2222233456789999999888887764 8
Q ss_pred CeEEEEeCCCC------Ceeeeee---cCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEE
Q psy8285 361 QTVRLWNSMNG------KEKCHVK---TDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAV 431 (507)
Q Consensus 361 ~~i~i~d~~~~------~~~~~~~---~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~ 431 (507)
+.|..|++... +...... .......+++..+|++.++ ....+.|..|| ..++.+..+.-....+++++
T Consensus 170 ~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva--~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~ 246 (295)
T d2ghsa1 170 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA--RWGEGAVDRYD-TDGNHIARYEVPGKQTTCPA 246 (295)
T ss_dssp CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE--EETTTEEEEEC-TTCCEEEEEECSCSBEEEEE
T ss_pred ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEee--eeCCCceEEec-CCCcEeeEecCCCCceEEEE
Confidence 89999886432 1111111 1245788999999988777 45578899999 57888888876667799999
Q ss_pred EC-CCCCEEEEE
Q psy8285 432 LS-PDQTCVAAA 442 (507)
Q Consensus 432 ~s-~~~~~l~s~ 442 (507)
|- +|.+.|+..
T Consensus 247 FGG~d~~~LyvT 258 (295)
T d2ghsa1 247 FIGPDASRLLVT 258 (295)
T ss_dssp EESTTSCEEEEE
T ss_pred EeCCCCCEEEEE
Confidence 95 676666443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.80 E-value=6e-07 Score=77.86 Aligned_cols=240 Identities=10% Similarity=0.023 Sum_probs=126.6
Q ss_pred eeCCC--C-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCC-----cEEEEeCCCcee
Q psy8285 172 DWGYH--D-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTE-----YIDLWHEQEERL 243 (507)
Q Consensus 172 ~~s~~--~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg-----~i~iwd~~~~~~ 243 (507)
..||+ | .++...++.|++.|+.+++..++.. +.+.+...+|||||+.|+.....++ .|.+++..+++.
T Consensus 5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~Lt~----~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~ 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTRKIVS----NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI 80 (281)
T ss_dssp CEEEEEETTEEEEEETTEEEEEETTTCCEEEEEC----SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE
T ss_pred ccCCCCCCCEEEEEeCCcEEEEECCCCCEEEEec----CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce
Confidence 34566 5 6666677889999999998876655 5667899999999999997622222 244445444433
Q ss_pred EEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeC-------CcEE
Q psy8285 244 IQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSN-------NTVK 316 (507)
Q Consensus 244 ~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d-------~~i~ 316 (507)
.+... + ...............|+|+|+.|+.... ..+.
T Consensus 81 ~~lt~-~----------------------------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 125 (281)
T d1k32a2 81 KRITY-F----------------------------------SGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLY 125 (281)
T ss_dssp EECCC-C----------------------------------CEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEE
T ss_pred EEeee-c----------------------------------CCCccCccccccccccCCCCCEEEEEEccCCCccceeee
Confidence 22100 0 0001111123355778888888776531 1234
Q ss_pred EEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCC---------CCeEEEEeCCCCCeeeeeecCCCeEEEE
Q psy8285 317 IWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGIC---------DQTVRLWNSMNGKEKCHVKTDSQVTSIL 387 (507)
Q Consensus 317 i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~i~~~~ 387 (507)
..+.... ..... +...... .+.+++..++....... ............................
T Consensus 126 ~~~~~~~----~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (281)
T d1k32a2 126 RVENDGI----NFVPL--NLGPATH-ILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPV 198 (281)
T ss_dssp EEEGGGT----EEEEC--CSCSCSE-EEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEE
T ss_pred eecCCCc----eeEEe--cCCccce-eeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceee
Confidence 4444432 11111 2222223 34444544444332100 0111122222222222223334455566
Q ss_pred ECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccc
Q psy8285 388 WSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRK 461 (507)
Q Consensus 388 ~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 461 (507)
++++..+.... ......|.++|+.+.+... +..+. ......|+|||+.|+.. .++.|+++|+.+++....
T Consensus 199 ~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~-lt~~~-~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 199 IVGHRIYFITD-IDGFGQIYSTDLDGKDLRK-HTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp EETTEEEEEEC-TTSSCEEEEEETTSCSCEE-CCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred eeccccceecc-cccccceEEEeCCCCceEE-eecCC-CcccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence 66654332221 2234468888987765443 32222 22334689999988764 467899999988776554
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.71 E-value=3.3e-05 Score=66.98 Aligned_cols=218 Identities=10% Similarity=0.035 Sum_probs=140.2
Q ss_pred eeeeCC-CC-EEEEE-cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 170 GLDWGY-HD-TLAVA-LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 170 ~~~~s~-~~-~~~~~-~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
+..|.+ ++ ++-+- ..+.|..||..+++.. ...+ ...+.++++.+++.+++++ .+ .+.++|..+++....
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~----~~~~~~i~~~~dg~l~va~--~~-gl~~~d~~tg~~~~l 93 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL----PFMGSALAKISDSKQLIAS--DD-GLFLRDTATGVLTLH 93 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC----SSCEEEEEEEETTEEEEEE--TT-EEEEEETTTCCEEEE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC----CCCcEEEEEecCCCEEEEE--eC-ccEEeecccceeeEE
Confidence 456776 34 44443 6789999999888754 4443 4568899999998776654 44 588999998875443
Q ss_pred Eee----cCccEEEEEe--eCCEEEEEecC----CeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-C-Cc
Q psy8285 247 LRT----HMHQVIAMCW--NGNLLSCGTIG----GNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-N-NT 314 (507)
Q Consensus 247 ~~~----~~~~v~~~~~--~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~~ 314 (507)
... ....+.++.. +|++.++.... +.-.+|.+..++ .. .+...-...+.++|+++++.++.+. . +.
T Consensus 94 ~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~-~~-~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~ 171 (295)
T d2ghsa1 94 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK-VT-KLFADISIPNSICFSPDGTTGYFVDTKVNR 171 (295)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE-EE-EEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCc-EE-EEeeccCCcceeeecCCCceEEEeecccce
Confidence 321 1224666666 46655554322 234455555443 22 2222233457899999999777665 4 89
Q ss_pred EEEEEcCCCCCC---C--CeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC-CCeEEEEE
Q psy8285 315 VKIWDFRQLDAK---R--PQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD-SQVTSILW 388 (507)
Q Consensus 315 i~i~d~~~~~~~---~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~i~~~~~ 388 (507)
|..|++...... + ......+..+....+++..+|. +.++.-+ .+.|..|| ..++.+..+..+ ..+++++|
T Consensus 172 I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~--~g~V~~~d-p~G~~~~~i~lP~~~~T~~~F 247 (295)
T d2ghsa1 172 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWG--EGAVDRYD-TDGNHIARYEVPGKQTTCPAF 247 (295)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEET--TTEEEEEC-TTCCEEEEEECSCSBEEEEEE
T ss_pred eeEeeecccccccccceEEEeccCcccccccceEEcCCCC-EEeeeeC--CCceEEec-CCCcEeeEecCCCCceEEEEE
Confidence 999987542110 1 1122233455678999999985 4444332 78999999 478888888876 56999999
Q ss_pred C-CCCCeEEEEecc
Q psy8285 389 S-EQYRELVTSHGK 401 (507)
Q Consensus 389 s-~~~~~l~~~~g~ 401 (507)
- |+.+.|+++++.
T Consensus 248 GG~d~~~LyvTta~ 261 (295)
T d2ghsa1 248 IGPDASRLLVTSAR 261 (295)
T ss_dssp ESTTSCEEEEEEBC
T ss_pred eCCCCCEEEEEECC
Confidence 5 777777776443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.65 E-value=6.9e-05 Score=62.40 Aligned_cols=264 Identities=9% Similarity=0.102 Sum_probs=175.1
Q ss_pred eeeCCCCEEEEE----cCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEE
Q psy8285 171 LDWGYHDTLAVA----LDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQK 246 (507)
Q Consensus 171 ~~~s~~~~~~~~----~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~ 246 (507)
+....|.++++- ...+|.|.|+.++......... ..+.-.+|..+.||.- + ..++.++|+++.+.++.
T Consensus 27 ~T~ESDkyicVRe~~~~~~~VvIidl~n~~~~~Rrpi~------AdsAIMhP~~~IiALr-a-g~~LQiFnletK~klks 98 (327)
T d1utca2 27 LTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPIS------ADSAIMNPASKVIALK-A-GKTLQIFNIEMKSKMKA 98 (327)
T ss_dssp EECSSSSEEEEEEEETTEEEEEEEETTSTTSCEEEECC------CSEEEECSSSSEEEEE-E-TTEEEEEETTTTEEEEE
T ss_pred EEEecCCEEEEEeccCCCceEEEEECCCCCcceecccc------hhhhhcCCCCcEEEEe-c-CCeEEEEehhHhhhhce
Confidence 444455655542 3458889999876644333332 2344567988888876 3 66899999999988888
Q ss_pred EeecCccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCC----CceEEEEEcCCCCEEEEEe----C----C
Q psy8285 247 LRTHMHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREG----DVVCGLKWSPNGRYLASGS----N----N 313 (507)
Q Consensus 247 ~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~----d----~ 313 (507)
+.-. .+|.--.| +.+.|+..+ +..|+-|+++....+.+.+..|. ..|-.-..+++.++++..+ + |
T Consensus 99 ~~~~-e~VvfWkWis~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G 176 (327)
T d1utca2 99 HTMT-DDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVG 176 (327)
T ss_dssp EECS-SCCCEEEESSSSEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEE
T ss_pred EEcC-CCcEEEEecCCCEEEEEc-CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeE
Confidence 7744 46666667 888888877 45899999976655666666553 4577778889999876543 2 7
Q ss_pred cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccC--CCcEEEEEcc-CCCCeEEEEeCCCCC---e---ee--ee--ec-
Q psy8285 314 TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPW--EPTLLATGGG-ICDQTVRLWNSMNGK---E---KC--HV--KT- 379 (507)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~-~~d~~i~i~d~~~~~---~---~~--~~--~~- 379 (507)
.+.+|..+. +..+.+++|.+....+....+ ...+++.+.. ...+++++.++.... + .+ .+ ..
T Consensus 177 ~mQLYS~er----~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppe 252 (327)
T d1utca2 177 AMQLYSVDR----KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE 252 (327)
T ss_dssp EEEEEETTT----TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTT
T ss_pred EEEEEEecc----CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCcc
Confidence 789999886 466777888665555544321 1235444431 124689999986532 1 11 11 11
Q ss_pred --CCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEE
Q psy8285 380 --DSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISI 450 (507)
Q Consensus 380 --~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~i 450 (507)
..-..++..++....++. -+.-|.|++||+.++.++..-+--...|...+-+.+..=+++...+|.|.-
T Consensus 253 a~~DFPvamqvs~kygiiyv--iTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 253 AQNDFPVAMQISEKHDVVFL--ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp CTTCCEEEEEEETTTTEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred ccCCcEEEEEeeccCCEEEE--EecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence 134678889988888887 568899999999999998877665666654444444444555666776543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=0.00019 Score=60.89 Aligned_cols=232 Identities=7% Similarity=-0.017 Sum_probs=146.1
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCce----eEEEEeecCcc
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEER----LIQKLRTHMHQ 253 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~ 253 (507)
+|..+....|+..++.+.+...+.. ....+.++.|.+..+.|..+-...+.|.-.++.... ....+......
T Consensus 3 fLl~s~~~~I~~~~l~~~~~~~~~~----~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~ 78 (266)
T d1ijqa1 3 YLFFTNRHEVRKMTLDRSEYTSLIP----NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQA 78 (266)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC----SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSC
T ss_pred EEEEECCCeEEEEECCCCcceeeeC----CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCC
Confidence 4555666779989998776655543 455688999999888888774566677776665322 11222222233
Q ss_pred EEEEEee--CCEEE-EEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--C-CcEEEEEcCCCCCCC
Q psy8285 254 VIAMCWN--GNLLS-CGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--N-NTVKIWDFRQLDAKR 327 (507)
Q Consensus 254 v~~~~~~--~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d-~~i~i~d~~~~~~~~ 327 (507)
+..+++| +..|. +-...+.|.+.++.... ..............+++.|...++.... . +.|...++...
T Consensus 79 p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~-~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs---- 153 (266)
T d1ijqa1 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---- 153 (266)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC----
T ss_pred cceEEEeeccceEEEEecCCCEEEeEecCCce-EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC----
Confidence 4455553 44444 44556789999998654 3334444556688999999766665544 2 56777776543
Q ss_pred Ceeee-cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC---CCeEEEEECCCCCeEEEEeccCC
Q psy8285 328 PQVNN-QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD---SQVTSILWSEQYRELVTSHGKQD 403 (507)
Q Consensus 328 ~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~i~~~~~s~~~~~l~~~~g~~d 403 (507)
....+ ...-.....+++.+.+++++.+... .+.|...++............ .....+++. +.+|+.+ -..+
T Consensus 154 ~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~--~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~t-d~~~ 228 (266)
T d1ijqa1 154 DIYSLVTENIQWPNGITLDLLSGRLYWVDSK--LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT-DIIN 228 (266)
T ss_dssp CEEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEE-ETTT
T ss_pred ceecccccccceeeEEEeeccccEEEEecCC--cCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEE-ECCC
Confidence 23333 2334567899999988888888665 789999998665543333332 345677766 3455553 3466
Q ss_pred CeEEEEeCCCccEEEEeecc
Q psy8285 404 CSLKMWEYPRLHLIEELKIH 423 (507)
Q Consensus 404 ~~i~v~d~~~~~~~~~~~~~ 423 (507)
+.|...+..+++....+...
T Consensus 229 ~~I~~~~~~~g~~~~~~~~~ 248 (266)
T d1ijqa1 229 EAIFSANRLTGSDVNLLAEN 248 (266)
T ss_dssp TEEEEEETTTCCCCEEEECS
T ss_pred CeEEEEECCCCcceEEEEcC
Confidence 78888887777665555443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.52 E-value=0.00019 Score=60.67 Aligned_cols=245 Identities=9% Similarity=0.025 Sum_probs=155.3
Q ss_pred EEEEEcCCeEEEEECCCCcee-----EEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCc
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQ-----LLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMH 252 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 252 (507)
+|..+..+.|+-.+++..... ..... +...+..++|.+..+.++.+...++.|+..++........+.....
T Consensus 3 fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~---~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~ 79 (263)
T d1npea_ 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHI---PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (263)
T ss_dssp EEEEEEEEEEEEEEESSSCBCGGGCEEEEEE---EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred EEEEeCCCeEEEEECCCcccccccccccccc---CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccc
Confidence 344455667777777543321 11222 3445788999998888887746678899999876655555544445
Q ss_pred cEEEEEee--CCEEE-EEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-C-Cc--EEEEEcCCCCC
Q psy8285 253 QVIAMCWN--GNLLS-CGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-N-NT--VKIWDFRQLDA 325 (507)
Q Consensus 253 ~v~~~~~~--~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~~--i~i~d~~~~~~ 325 (507)
.+..+++| ++.|. +-...+.|.+.+++... ..............+++.|...++.... . +. |.--++...
T Consensus 80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~-- 156 (263)
T d1npea_ 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-- 156 (263)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC--
T ss_pred cccEEEEeccCCeEEEeccCCCEEEEEecCCce-EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC--
Confidence 66777774 55555 44556789999998654 2223333346788999999877776554 2 33 444455433
Q ss_pred CCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCe
Q psy8285 326 KRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCS 405 (507)
Q Consensus 326 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~ 405 (507)
.........-.....+++.+.++.++.+..+ .+.|...|+........+........+++. +.+|+.+ -...+.
T Consensus 157 -~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwt-d~~~~~ 230 (263)
T d1npea_ 157 -NRRILAQDNLGLPNGLTFDAFSSQLCWVDAG--THRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYT-DWKTNS 230 (263)
T ss_dssp -CCEEEECTTCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEE-ETTTTE
T ss_pred -CceeeeeecccccceEEEeecCcEEEEEeCC--CCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEE-ECCCCE
Confidence 2222222233566899999888888887665 789999998765544444444556678775 4556554 446788
Q ss_pred EEEEeCCCccEEEEeec-cccceeEEEECC
Q psy8285 406 LKMWEYPRLHLIEELKI-HQERILSAVLSP 434 (507)
Q Consensus 406 i~v~d~~~~~~~~~~~~-~~~~i~~~~~s~ 434 (507)
|...|..+++.+..+.. .......++..+
T Consensus 231 I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 231 VIAMDLAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp EEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred EEEEECCCCccceEECCCCCCCcceEEEeC
Confidence 99999988887766542 233444555544
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.51 E-value=0.00021 Score=60.34 Aligned_cols=231 Identities=9% Similarity=-0.002 Sum_probs=143.9
Q ss_pred CeEEEEeCCCCcEEEEeCCCce-----eEEEEeecCccEEEEEee--CCEEEEE-ecCCeEEEEECCCCCcCceeeecCC
Q psy8285 221 TDLAVTNTCTEYIDLWHEQEER-----LIQKLRTHMHQVIAMCWN--GNLLSCG-TIGGNILHYDVRTHSDYPTAITREG 292 (507)
Q Consensus 221 ~~l~~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~v~~~~~~--~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~ 292 (507)
.+|+.+ ..+.|+-.+++... ....+..+...+..++|| .+.|... ...+.|+..+++... .........
T Consensus 2 ~fLl~s--~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~-~~~v~~~~~ 78 (263)
T d1npea_ 2 THLLFA--QTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-PTTIIRQDL 78 (263)
T ss_dssp EEEEEE--EEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-CEEEECTTC
T ss_pred CEEEEe--CCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC-cEEEEEecc
Confidence 345554 44567666665432 122333344557778884 4555554 556789988887654 333333334
Q ss_pred CceEEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC
Q psy8285 293 DVVCGLKWSPNGRYLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN 370 (507)
Q Consensus 293 ~~v~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~ 370 (507)
..+.++++..-++.|..+. . +.|.+.++... ............+..++++|....++.+..+.....|.--++..
T Consensus 79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~---~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG 155 (263)
T d1npea_ 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT---QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155 (263)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred ccccEEEEeccCCeEEEeccCCCEEEEEecCCc---eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCC
Confidence 5688999987777777665 4 89999998764 32222333346788999999888888776542233455556654
Q ss_pred CCeeeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEE-eCCCcE
Q psy8285 371 GKEKCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAA-SADETI 448 (507)
Q Consensus 371 ~~~~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~-~~dg~i 448 (507)
.......... .....+++.+.++.|+.+ -...+.|...++........+.+-.. ..++++. +..|+.. ...+.|
T Consensus 156 ~~~~~i~~~~~~~P~glaiD~~~~~lYw~-d~~~~~I~~~~~~g~~~~~v~~~~~~-P~~lav~--~~~lYwtd~~~~~I 231 (263)
T d1npea_ 156 TNRRILAQDNLGLPNGLTFDAFSSQLCWV-DAGTHRAECLNPAQPGRRKVLEGLQY-PFAVTSY--GKNLYYTDWKTNSV 231 (263)
T ss_dssp CCCEEEECTTCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTEEEEEEEEECCCS-EEEEEEE--TTEEEEEETTTTEE
T ss_pred CCceeeeeecccccceEEEeecCcEEEEE-eCCCCEEEEEECCCCCeEEEECCCCC-cEEEEEE--CCEEEEEECCCCEE
Confidence 4433333323 567899999988888774 35678999999876554444443333 3467764 4455444 456788
Q ss_pred EEEecCCCCcccc
Q psy8285 449 SIWNCFPRDKKRK 461 (507)
Q Consensus 449 ~iw~~~~~~~~~~ 461 (507)
...+..+++....
T Consensus 232 ~~~~~~~g~~~~~ 244 (263)
T d1npea_ 232 IAMDLAISKEMDT 244 (263)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEECCCCccceE
Confidence 8888887765543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.13 E-value=0.00015 Score=63.85 Aligned_cols=219 Identities=12% Similarity=0.057 Sum_probs=134.9
Q ss_pred cCCCeEEEEeCCCCcEEEEeCCCceeEEEEee-cCccEEEEEe----eCCEEEEEecCC------------------eEE
Q psy8285 218 PRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT-HMHQVIAMCW----NGNLLSCGTIGG------------------NIL 274 (507)
Q Consensus 218 ~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~----~~~~l~~~~~dg------------------~i~ 274 (507)
+||++|++....+++|.+-|+.+.+..+.+.- ....+..+.. +..+++..+... .+.
T Consensus 97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t 176 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 176 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence 48999999867889999999999988775543 3445565554 455777766532 356
Q ss_pred EEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-C-C-------------------------------------cE
Q psy8285 275 HYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-N-N-------------------------------------TV 315 (507)
Q Consensus 275 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-~-------------------------------------~i 315 (507)
+.|..+.+...+... ......+.++++|+++++.+ + . .+
T Consensus 177 ~ID~~tm~V~~QV~V--~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV 254 (459)
T d1fwxa2 177 AVDADKWEVAWQVLV--SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV 254 (459)
T ss_dssp EEETTTTEEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred EEecCCceEEEEeee--CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCc
Confidence 778877653222222 23456789999999988876 2 1 12
Q ss_pred EEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCC--------ee----eeeecCCCe
Q psy8285 316 KIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGK--------EK----CHVKTDSQV 383 (507)
Q Consensus 316 ~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--------~~----~~~~~~~~i 383 (507)
.+.|.+.......+..+. -......+..+|||+++++++. .+.++.++|++.-. +. ...+..-..
T Consensus 255 ~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGK--Ls~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgP 331 (459)
T d1fwxa2 255 KVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGK--LSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP 331 (459)
T ss_dssp EEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECT--TSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCE
T ss_pred eeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCC--cCCcEEEEEehhhhhhhcccCCccccEEeecccCcCc
Confidence 333333211111222222 2234567899999998888876 49999999986321 11 111222346
Q ss_pred EEEEECCCCCeEEEEeccCCCeEEEEeCCCc----------cEEEEeeccccc-----eeEEEECCCCCEEEEEe
Q psy8285 384 TSILWSEQYRELVTSHGKQDCSLKMWEYPRL----------HLIEELKIHQER-----ILSAVLSPDQTCVAAAS 443 (507)
Q Consensus 384 ~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~----------~~~~~~~~~~~~-----i~~~~~s~~~~~l~s~~ 443 (507)
...+|+..|. ..++ -.-|..|.-|++... ..+..+..|-.+ ...-...|||++|++..
T Consensus 332 Lht~fd~~g~-ayts-lfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n 404 (459)
T d1fwxa2 332 LHTAFDGRGN-AYTS-LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS 404 (459)
T ss_dssp EEEEECTTSE-EEEE-ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred cccccCCCce-EEEE-eeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence 7778888774 3333 578999999998432 334455433221 11113468999999875
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.02 E-value=0.002 Score=56.70 Aligned_cols=228 Identities=9% Similarity=0.023 Sum_probs=140.6
Q ss_pred eEEEEeCCCCcEEEEeCCCceeEEEEeecC-----------------------------------------ccEEEEEe-
Q psy8285 222 DLAVTNTCTEYIDLWHEQEERLIQKLRTHM-----------------------------------------HQVIAMCW- 259 (507)
Q Consensus 222 ~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------------~~v~~~~~- 259 (507)
+.+.+|+..|.|+|+-+.+++.++.+.... .--..+++
T Consensus 14 y~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~T 93 (459)
T d1fwxa2 14 YGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFT 93 (459)
T ss_dssp EEEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEE
T ss_pred EEEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCccccc
Confidence 344445889999999888887766543110 00124555
Q ss_pred ----eCCEEEEEe-cCCeEEEEECCCCCcCceeeecCCCceEEEEEcC--CCCEEEEEeC-------------------C
Q psy8285 260 ----NGNLLSCGT-IGGNILHYDVRTHSDYPTAITREGDVVCGLKWSP--NGRYLASGSN-------------------N 313 (507)
Q Consensus 260 ----~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~d-------------------~ 313 (507)
||++++... .+..|.+.|+++.+............+..+...+ +-.+++..+. +
T Consensus 94 dGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~ 173 (459)
T d1fwxa2 94 EGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN 173 (459)
T ss_dssp TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred CCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence 577777666 5678999999987622222223455667777655 4456665543 2
Q ss_pred cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC---------------------------------
Q psy8285 314 TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD--------------------------------- 360 (507)
Q Consensus 314 ~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d--------------------------------- 360 (507)
.+...|..+. +...... -.+....+.++|+|+++++++..++.
T Consensus 174 ~~t~ID~~tm---~V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ 249 (459)
T d1fwxa2 174 VFTAVDADKW---EVAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ 249 (459)
T ss_dssp EEEEEETTTT---EEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSE
T ss_pred EEEEEecCCc---eEEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcE
Confidence 2566777765 3333332 23456689999999888887743221
Q ss_pred --CeEEEEeCCCC---CeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccE------------EEEeecc
Q psy8285 361 --QTVRLWNSMNG---KEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHL------------IEELKIH 423 (507)
Q Consensus 361 --~~i~i~d~~~~---~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~------------~~~~~~~ 423 (507)
+.+.+.|.+.. ..+..+........+..+|||++++++ |..+..+.|+|++.... ..+.. .
T Consensus 250 eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~Va-GKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-l 327 (459)
T d1fwxa2 250 ELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVA-GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-L 327 (459)
T ss_dssp EETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEE-CTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-C
T ss_pred EeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEe-CCcCCcEEEEEehhhhhhhcccCCccccEEeecc-c
Confidence 12234443321 223334444556788999999999998 78899999999864221 11111 1
Q ss_pred ccceeEEEECCCCCEEEEEeCCCcEEEEecCC
Q psy8285 424 QERILSAVLSPDQTCVAAASADETISIWNCFP 455 (507)
Q Consensus 424 ~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~ 455 (507)
.-.-..-+|+.+|.-..|.--|..|.-|++..
T Consensus 328 glgPLht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CcCccccccCCCceEEEEeeccceEEEEecch
Confidence 12234568888886555666899999999863
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=0.0045 Score=52.01 Aligned_cols=231 Identities=13% Similarity=-0.005 Sum_probs=143.6
Q ss_pred eEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEee--CCEEEEEe-cCCeEEEEECCCCC---cCceeeecCCCce
Q psy8285 222 DLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWN--GNLLSCGT-IGGNILHYDVRTHS---DYPTAITREGDVV 295 (507)
Q Consensus 222 ~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~-~dg~i~i~d~~~~~---~~~~~~~~~~~~v 295 (507)
+|+.+ ....|+-.++.+.+....+. ....+.+++|| .+.|.... ..+.|...+++... ............+
T Consensus 3 fLl~s--~~~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p 79 (266)
T d1ijqa1 3 YLFFT--NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 79 (266)
T ss_dssp EEEEE--CBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred EEEEE--CCCeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCc
Confidence 45555 34568888988765444433 45567788884 55555554 55667777765422 1122233333456
Q ss_pred EEEEEcCCCCEEEEEe-C-CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe
Q psy8285 296 CGLKWSPNGRYLASGS-N-NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE 373 (507)
Q Consensus 296 ~~~~~~~~~~~l~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 373 (507)
..+++.+.++.|..+. . +.|.+.++... ...............++.+|....++.+..+ ..+.|.-.++.....
T Consensus 80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~---~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~-~~~~I~r~~~dGs~~ 155 (266)
T d1ijqa1 80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDI 155 (266)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTSS---SEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCE
T ss_pred ceEEEeeccceEEEEecCCCEEEeEecCCc---eEEEEEcCCCCCcceEEEEcccCeEEEeccC-CCcceeEeccCCCce
Confidence 7899988777777766 4 89999998865 3333344455678899999977778777642 245777777765544
Q ss_pred eeeeecC-CCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeec--cccceeEEEECCCCCEEEEEeCCCcEEE
Q psy8285 374 KCHVKTD-SQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKI--HQERILSAVLSPDQTCVAAASADETISI 450 (507)
Q Consensus 374 ~~~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~s~~~dg~i~i 450 (507)
....... .....+++.+.++.|+.+ -...+.|...++........... ......++++. ++....+-..++.|..
T Consensus 156 ~~l~~~~~~~p~gl~iD~~~~~lYw~-d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~ 233 (266)
T d1ijqa1 156 YSLVTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFS 233 (266)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred ecccccccceeeEEEeeccccEEEEe-cCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEE
Confidence 4433333 568899999998888875 45678999999865443332222 22334567765 2333444446678888
Q ss_pred EecCCCCcccc
Q psy8285 451 WNCFPRDKKRK 461 (507)
Q Consensus 451 w~~~~~~~~~~ 461 (507)
.+..+++....
T Consensus 234 ~~~~~g~~~~~ 244 (266)
T d1ijqa1 234 ANRLTGSDVNL 244 (266)
T ss_dssp EETTTCCCCEE
T ss_pred EECCCCcceEE
Confidence 77777665543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.79 E-value=0.0012 Score=55.97 Aligned_cols=106 Identities=10% Similarity=0.049 Sum_probs=69.1
Q ss_pred CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe--CC-----cEEEEEcCCCCCCCCeeeec
Q psy8285 261 GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS--NN-----TVKIWDFRQLDAKRPQVNNQ 333 (507)
Q Consensus 261 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--d~-----~i~i~d~~~~~~~~~~~~~~ 333 (507)
|+.++..+ ++.|.+.|+.+++ ...+..+.......+|||||+.||... ++ .|.+++...+ ....+.
T Consensus 12 G~~v~f~~-~~dl~~~d~~~g~--~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g----~~~~lt 84 (281)
T d1k32a2 12 GDRIIFVC-CDDLWEHDLKSGS--TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG----EIKRIT 84 (281)
T ss_dssp TTEEEEEE-TTEEEEEETTTCC--EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT----EEEECC
T ss_pred CCEEEEEe-CCcEEEEECCCCC--EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC----ceEEee
Confidence 88887765 5689999999876 456677778889999999999998764 22 3677777665 222221
Q ss_pred C-------CCCCeeEEEEccCCCcEEEEEccCC---CCeEEEEeCCCCCe
Q psy8285 334 C-------HLSAVKAIAWCPWEPTLLATGGGIC---DQTVRLWNSMNGKE 373 (507)
Q Consensus 334 ~-------~~~~v~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~ 373 (507)
. .........|+|+++.++.+..... ...+...+...+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (281)
T d1k32a2 85 YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF 134 (281)
T ss_dssp CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE
T ss_pred ecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee
Confidence 1 2234567899999987776544211 22345555544443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.69 E-value=0.0057 Score=57.73 Aligned_cols=281 Identities=11% Similarity=0.019 Sum_probs=153.1
Q ss_pred EEEEEc-CCeEEEEECC-CCceeEEEecCCCCCC--------ceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE
Q psy8285 178 TLAVAL-DTSVYTWNTK-TNKTQLLVEYPTYDNA--------YISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 178 ~~~~~~-~~~i~iw~~~-~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~ 247 (507)
++.++. ++.|.-.|.. +|+.+-.++.+..... .-..+++. +..++.+ +.+|.+.-.|.++++.+...
T Consensus 65 vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~-~~~g~l~alda~tG~~~w~~ 141 (571)
T d2ad6a1 65 MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKK-QANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEE-CTTSEEEEEETTTCCEEEEE
T ss_pred EEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEE-eCCCcEEeeehhhhhhhccc
Confidence 334443 6788888874 6887665543210000 00123333 3467777 89999999999999987765
Q ss_pred eecC----ccEE--EEEeeCCEEEEEe------cCCeEEEEECCCCCcCceeeec-------------------------
Q psy8285 248 RTHM----HQVI--AMCWNGNLLSCGT------IGGNILHYDVRTHSDYPTAITR------------------------- 290 (507)
Q Consensus 248 ~~~~----~~v~--~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~------------------------- 290 (507)
.... ..++ -+-++ ..++.+. .+|.|+-+|+++++..-.....
T Consensus 142 ~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (571)
T d2ad6a1 142 EVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG 220 (571)
T ss_dssp ECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred cccccccccceeecCeEeC-CeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccccc
Confidence 4211 1111 11223 4444444 3678999999988733221100
Q ss_pred -----------CCCce-EEEEEcCCCCEEEEEeC-----------------CcEEEEEcCCCCCCCCeeeecCCCC----
Q psy8285 291 -----------EGDVV-CGLKWSPNGRYLASGSN-----------------NTVKIWDFRQLDAKRPQVNNQCHLS---- 337 (507)
Q Consensus 291 -----------~~~~v-~~~~~~~~~~~l~~~~d-----------------~~i~i~d~~~~~~~~~~~~~~~~~~---- 337 (507)
....+ ...++.++..++..+.. ..+.-.|.+++ +..-.++....
T Consensus 221 ~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG---~~~W~~q~~~~D~Wd 297 (571)
T d2ad6a1 221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG---MAKWGYQKTPHDEWD 297 (571)
T ss_dssp HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC---CEEEEEESSTTCSSC
T ss_pred ccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccch---hheecccccCccccc
Confidence 00111 22455566555554331 23556677766 44333332111
Q ss_pred -----CeeEEEEccCCCc--EEEEEccCCCCeEEEEeCCCCCeeeeeecC------------------------------
Q psy8285 338 -----AVKAIAWCPWEPT--LLATGGGICDQTVRLWNSMNGKEKCHVKTD------------------------------ 380 (507)
Q Consensus 338 -----~v~~~~~~~~~~~--~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------------------------------ 380 (507)
.........++.. .++.... +|.+.++|..+++.+...+..
T Consensus 298 ~D~~~~~~l~~~~~~g~~~~~v~~~~k--~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g 375 (571)
T d2ad6a1 298 FAGVNQMVLTDQPVNGKMTPLLSHIDR--NGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKG 375 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECT--TSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCE
T ss_pred cccccccceeeeeccCccccceeeccc--cceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCc
Confidence 1112222234432 3444443 899999999999876432110
Q ss_pred ----------CCeEEEEECCCCCeEEEEec-----------------------------------cCCCeEEEEeCCCcc
Q psy8285 381 ----------SQVTSILWSEQYRELVTSHG-----------------------------------KQDCSLKMWEYPRLH 415 (507)
Q Consensus 381 ----------~~i~~~~~s~~~~~l~~~~g-----------------------------------~~d~~i~v~d~~~~~ 415 (507)
..-...+++|+...+++... ...|.|.-+|+.+++
T Consensus 376 ~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~ 455 (571)
T d2ad6a1 376 TNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGK 455 (571)
T ss_dssp EEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCC
T ss_pred eEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCc
Confidence 00012566777666654210 012467778888888
Q ss_pred EEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecCCC
Q psy8285 416 LIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGSG 468 (507)
Q Consensus 416 ~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 468 (507)
.+.+.... .+..+-..+-.+.++++++.||.++.+|.++++.+-+.......
T Consensus 456 ~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~ 507 (571)
T d2ad6a1 456 AKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG 507 (571)
T ss_dssp EEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred eeeEcCCC-CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCc
Confidence 77765422 11111112224667888999999999999999999877655443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.63 E-value=0.0091 Score=56.18 Aligned_cols=281 Identities=12% Similarity=0.009 Sum_probs=157.6
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCC-------C-CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTY-------D-NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT 249 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~-------~-~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~ 249 (507)
++.++.++.|+-.|.++|+.+-.+..... . ...-..++.. +..++.+ ..++.+.-.|..+++.+.....
T Consensus 69 vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~-~~~g~l~Alda~tG~~~w~~~~ 145 (560)
T d1kv9a2 69 IYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALW--GDKVYVG-TLDGRLIALDAKTGKAIWSQQT 145 (560)
T ss_dssp EEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEE--BTEEEEE-CTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCccee--CCeEEEE-eCCCEEEEEECCCCcEEeccCc
Confidence 66677889999999999988766532110 0 0000112221 3467777 8899999999999998887753
Q ss_pred cCc--c--EE-EEEeeCCEEEEEec------CCeEEEEECCCCCcCceeeecC---------------------------
Q psy8285 250 HMH--Q--VI-AMCWNGNLLSCGTI------GGNILHYDVRTHSDYPTAITRE--------------------------- 291 (507)
Q Consensus 250 ~~~--~--v~-~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~--------------------------- 291 (507)
... . +. .....+..++.+.. .|.|.-+|.++++..-+.....
T Consensus 146 ~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (560)
T d1kv9a2 146 TDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKL 225 (560)
T ss_dssp SCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHH
T ss_pred cCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccc
Confidence 221 1 10 01112334444432 3678999998887322211100
Q ss_pred --CCce-EEEEEcCCCCEEEEEeC--------------------CcEEEEEcCCCCCCCCeeeecCCCC---------Ce
Q psy8285 292 --GDVV-CGLKWSPNGRYLASGSN--------------------NTVKIWDFRQLDAKRPQVNNQCHLS---------AV 339 (507)
Q Consensus 292 --~~~v-~~~~~~~~~~~l~~~~d--------------------~~i~i~d~~~~~~~~~~~~~~~~~~---------~v 339 (507)
...+ ..+++.+...++..+.. ..|.-.|++++ +....++.... ..
T Consensus 226 ~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG---~~~W~~Q~~~~D~wd~d~~~~~ 302 (560)
T d1kv9a2 226 GGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG---KLAWHYQVTPGDSWDFTATQQI 302 (560)
T ss_dssp CEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC---CEEEEEESSTTCCSCCCCCSCE
T ss_pred cCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCcc---ceeEEEecccccccccccccee
Confidence 0011 12455666665543221 23455566665 33322221111 11
Q ss_pred eEEEEccCCC--cEEEEEccCCCCeEEEEeCCCCCeeeeeecCC------------------------------------
Q psy8285 340 KAIAWCPWEP--TLLATGGGICDQTVRLWNSMNGKEKCHVKTDS------------------------------------ 381 (507)
Q Consensus 340 ~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~------------------------------------ 381 (507)
.-+....+++ .+++.... +|.+.++|..+++++.......
T Consensus 303 ~l~~~~~~g~~~~~v~~~~k--~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg 380 (560)
T d1kv9a2 303 TLAELNIDGKPRKVLMQAPK--NGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGA 380 (560)
T ss_dssp EEEEEEETTEEEEEEEECCT--TSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCS
T ss_pred eeeeeecCCceeeeeeecCc--cceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccc
Confidence 1122222332 34444443 8999999999998775432210
Q ss_pred -CeEEEEECCCCCeEEEEe----------------------------------ccCCCeEEEEeCCCccEEEEeeccccc
Q psy8285 382 -QVTSILWSEQYRELVTSH----------------------------------GKQDCSLKMWEYPRLHLIEELKIHQER 426 (507)
Q Consensus 382 -~i~~~~~s~~~~~l~~~~----------------------------------g~~d~~i~v~d~~~~~~~~~~~~~~~~ 426 (507)
.-...+++|+...+++-. +...|.|.-+|+.+++.+.+... ..+
T Consensus 381 ~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~-~~~ 459 (560)
T d1kv9a2 381 HNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY-PTH 459 (560)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE-SSS
T ss_pred cccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccC-CCC
Confidence 011345667766665521 01135688899999988877653 222
Q ss_pred eeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecCC
Q psy8285 427 ILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGS 467 (507)
Q Consensus 427 i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 467 (507)
..+-...-.+.+++.++.||.++.+|..+++.+-..+....
T Consensus 460 ~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~ 500 (560)
T d1kv9a2 460 WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSG 500 (560)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred CCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCC
Confidence 22222334567888899999999999999999987765543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.59 E-value=0.014 Score=55.04 Aligned_cols=81 Identities=11% Similarity=-0.042 Sum_probs=52.8
Q ss_pred CeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccc-eeEEEECCCCC-E
Q psy8285 361 QTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQER-ILSAVLSPDQT-C 438 (507)
Q Consensus 361 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~-i~~~~~s~~~~-~ 438 (507)
|.|.-+|+.+++.+..........+-..+-.+..+++ |+.||.++-+|.++|+.+.++.-.... -.-+.|..||+ |
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~--G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqY 521 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWY--ATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY 521 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEE--ECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEE
Confidence 4688889999988877665432221112224667777 889999999999999999888643221 11245566776 5
Q ss_pred EEEEe
Q psy8285 439 VAAAS 443 (507)
Q Consensus 439 l~s~~ 443 (507)
+++..
T Consensus 522 i~v~~ 526 (571)
T d2ad6a1 522 IGSMY 526 (571)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 54433
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.55 E-value=0.031 Score=52.56 Aligned_cols=280 Identities=11% Similarity=-0.004 Sum_probs=151.7
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCC-------CCCce-EEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEee
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTY-------DNAYI-SCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRT 249 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~-------~~~~v-~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~ 249 (507)
++.++.++.|.-+|.++|+.+-.++.... ....+ ..+... +..++.+ +.++.+.-.|..+++.+.....
T Consensus 80 vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~-t~~g~l~alda~tG~~~W~~~~ 156 (573)
T d1kb0a2 80 MYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVG-AWDGRLIALDAATGKEVWHQNT 156 (573)
T ss_dssp EEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEE-CTTSEEEEEETTTCCEEEEEET
T ss_pred EEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEE-ecccceeeeccccccceecccC
Confidence 55666788999999999998766543210 00011 122222 3356666 7899999999999998876553
Q ss_pred cCcc---EE----EEEeeCCEEEEEec------CCeEEEEECCCCCcCceeeecC-------------------------
Q psy8285 250 HMHQ---VI----AMCWNGNLLSCGTI------GGNILHYDVRTHSDYPTAITRE------------------------- 291 (507)
Q Consensus 250 ~~~~---v~----~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~------------------------- 291 (507)
.... +. .+. -+..++.++. .|.|+.+|.++++..-......
T Consensus 157 ~~~~~~~~~~~~~p~v-~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~ 235 (573)
T d1kb0a2 157 FEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKW 235 (573)
T ss_dssp TTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCH
T ss_pred ccCCcceEEeecceEE-EeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCCce
Confidence 2111 11 111 2444445432 4679999999887322111100
Q ss_pred -----CCce-EEEEEcCCCCEEEEEeC--------------------CcEEEEEcCCCCCCCCeeeecC--C-------C
Q psy8285 292 -----GDVV-CGLKWSPNGRYLASGSN--------------------NTVKIWDFRQLDAKRPQVNNQC--H-------L 336 (507)
Q Consensus 292 -----~~~v-~~~~~~~~~~~l~~~~d--------------------~~i~i~d~~~~~~~~~~~~~~~--~-------~ 336 (507)
...+ ...++.++...++.... ..|.-.|.+++ +.....+. | .
T Consensus 236 ~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG---~~~W~~q~~~~d~wd~d~~ 312 (573)
T d1kb0a2 236 WEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG---KYKWHYQETPGDNWDYTST 312 (573)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC---CEEEEEESSTTCCSCCCCC
T ss_pred eecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccch---heeecccccCccccccccc
Confidence 0011 12344555444432210 12344444444 22221111 1 1
Q ss_pred CCeeEEEEccCCC--cEEEEEccCCCCeEEEEeCCCCCeeeeeecC----------------------------------
Q psy8285 337 SAVKAIAWCPWEP--TLLATGGGICDQTVRLWNSMNGKEKCHVKTD---------------------------------- 380 (507)
Q Consensus 337 ~~v~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---------------------------------- 380 (507)
.+........++. .+++.+. .+|.+.++|..+++.+......
T Consensus 313 ~~~~l~~~~~~g~~~~~v~~~~--k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~ 390 (573)
T d1kb0a2 313 QPMILADIKIAGKPRKVILHAP--KNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPY 390 (573)
T ss_dssp SCCEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTT
T ss_pred ceeeecceecCCCceeeeeecc--ccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeeccc
Confidence 1122222223332 2334433 4899999999999876544311
Q ss_pred --CCeEEEEECCCCCeEEEEecc-----------------------------------------CCCeEEEEeCCCccEE
Q psy8285 381 --SQVTSILWSEQYRELVTSHGK-----------------------------------------QDCSLKMWEYPRLHLI 417 (507)
Q Consensus 381 --~~i~~~~~s~~~~~l~~~~g~-----------------------------------------~d~~i~v~d~~~~~~~ 417 (507)
..-..++++|+...+++-... .-|.+.-||+.+++.+
T Consensus 391 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~ 470 (573)
T d1kb0a2 391 GAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAA 470 (573)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEE
T ss_pred CCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceE
Confidence 001124667776666542100 0135777888888888
Q ss_pred EEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecCC
Q psy8285 418 EELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGS 467 (507)
Q Consensus 418 ~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 467 (507)
.+.+... +...-..+-.+.++++++.||.++.+|..+++.+-+.+....
T Consensus 471 W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~ 519 (573)
T d1kb0a2 471 WSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG 519 (573)
T ss_dssp EEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred eeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCC
Confidence 7765322 222222333677888899999999999999999987765543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.49 E-value=0.033 Score=50.31 Aligned_cols=250 Identities=10% Similarity=0.030 Sum_probs=136.3
Q ss_pred CCceEEEEEccCCCeEEEEeCCC----CcEEEEeCCCceeEEEEeecCccEEEEEe--eCCEEEEEecC-----------
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCT----EYIDLWHEQEERLIQKLRTHMHQVIAMCW--NGNLLSCGTIG----------- 270 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d----------- 270 (507)
.-.+...+++|++++++.+-+.+ -.++++|+.+++.+...-. ......+.| |++.|+....+
T Consensus 124 ~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~ 202 (430)
T d1qfma1 124 TVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (430)
T ss_dssp CEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred cceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCccccccc
Confidence 33455678899999999763333 3799999999987653221 111245677 66666554322
Q ss_pred -----CeEEEEECCCCCcCce-eeecC--CCceEEEEEcCCCCEEEEEe----CCc--EEEEEcCCCCCC-----CCeee
Q psy8285 271 -----GNILHYDVRTHSDYPT-AITRE--GDVVCGLKWSPNGRYLASGS----NNT--VKIWDFRQLDAK-----RPQVN 331 (507)
Q Consensus 271 -----g~i~i~d~~~~~~~~~-~~~~~--~~~v~~~~~~~~~~~l~~~~----d~~--i~i~d~~~~~~~-----~~~~~ 331 (507)
..|..+.+.+....-. .+... ...+..+..++++++++... ... +.+.|+...... .....
T Consensus 203 ~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 282 (430)
T d1qfma1 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL 282 (430)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred ccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEe
Confidence 2577888877643222 22222 23466778899999876432 233 444555442110 01112
Q ss_pred ecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCee--e-eeecC-CCeEEEEECCCCCeEEEEeccCCC--e
Q psy8285 332 NQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEK--C-HVKTD-SQVTSILWSEQYRELVTSHGKQDC--S 405 (507)
Q Consensus 332 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~-~~~~~-~~i~~~~~s~~~~~l~~~~g~~d~--~ 405 (507)
.........-+. +.++..++.+.....++.|...++...... . .+..+ ..+..-.+...+.+|+.. ...++ .
T Consensus 283 ~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~-~~~~~~~~ 360 (430)
T d1qfma1 283 IDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC-YLHDVKNT 360 (430)
T ss_dssp ECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE-EEETTEEE
T ss_pred ecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEE-EEcCCEeE
Confidence 222222333322 223323334433223577888887765421 2 23323 334443444445566653 33444 6
Q ss_pred EEEEeCCCccEEEEeeccccceeEEEECCCCCEEE-EEe---CCCcEEEEecCCCCccc
Q psy8285 406 LKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVA-AAS---ADETISIWNCFPRDKKR 460 (507)
Q Consensus 406 i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-s~~---~dg~i~iw~~~~~~~~~ 460 (507)
|++++..+++.........+.+..+...++...+. +-+ .-.++.-+|+.+++...
T Consensus 361 l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~~ 419 (430)
T d1qfma1 361 LQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEP 419 (430)
T ss_dssp EEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCC
T ss_pred EEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcce
Confidence 89999988876655544455666666556555433 222 23779999998876543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.43 E-value=0.022 Score=53.76 Aligned_cols=276 Identities=12% Similarity=0.014 Sum_probs=150.4
Q ss_pred CCeEEEEEC-CCCceeEEEecCCC--------CCCceEEEEEccC----CCeEEEEeCCCCcEEEEeCCCceeEEEEeec
Q psy8285 184 DTSVYTWNT-KTNKTQLLVEYPTY--------DNAYISCVAWKPR----TTDLAVTNTCTEYIDLWHEQEERLIQKLRTH 250 (507)
Q Consensus 184 ~~~i~iw~~-~~~~~~~~~~~~~~--------~~~~v~~~~~~~~----~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~ 250 (507)
++.+...|. ++|+.+-.++.... ....-+.+++.++ ..+++.+ +.|+.|.-.|..+++.+..+...
T Consensus 72 ~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~-t~dg~l~Alda~tG~~~w~~~~~ 150 (596)
T d1w6sa_ 72 PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKT-QLDGNVAALNAETGETVWKVENS 150 (596)
T ss_dssp TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEE-CTTSEEEEEETTTCCEEEEEECC
T ss_pred CCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEE-eCCCCeEeeccccCceecccccc
Confidence 466776775 46776555432210 0001133444433 2357777 89999999999999998877532
Q ss_pred Cc----cEE-EEEeeCCEEEEEec------CCeEEEEECCCCCcCceeeec-----------------------------
Q psy8285 251 MH----QVI-AMCWNGNLLSCGTI------GGNILHYDVRTHSDYPTAITR----------------------------- 290 (507)
Q Consensus 251 ~~----~v~-~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~----------------------------- 290 (507)
.. .++ .-..-+..++.+.. .|.|+-+|.++++..-+....
T Consensus 151 d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw 230 (596)
T d1w6sa_ 151 DIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTW 230 (596)
T ss_dssp CGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTS
T ss_pred ccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccC
Confidence 11 111 11113555555543 488999999998743221110
Q ss_pred --------CCCceEEEEEcCCCCEEEEEe-C----------------CcEEEEEcCCCCCCCCeeeecC--CC-------
Q psy8285 291 --------EGDVVCGLKWSPNGRYLASGS-N----------------NTVKIWDFRQLDAKRPQVNNQC--HL------- 336 (507)
Q Consensus 291 --------~~~~v~~~~~~~~~~~l~~~~-d----------------~~i~i~d~~~~~~~~~~~~~~~--~~------- 336 (507)
....-..+++.+...++..+. + ..|.-.|++++ +..-.++. |.
T Consensus 231 ~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG---~~~W~~Q~~~~D~Wd~d~~ 307 (596)
T d1w6sa_ 231 EGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG---EAKFGYQKTPHDEWDYAGV 307 (596)
T ss_dssp STTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC---CEEEEEESSTTCSSCCCCC
T ss_pred CCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccc---cccccccceeccccCCccc
Confidence 000112345566666655543 1 23556677776 44333322 11
Q ss_pred CCeeEEEE-ccCCC--cEEEEEccCCCCeEEEEeCCCCCeeeeeecCC--------------------------------
Q psy8285 337 SAVKAIAW-CPWEP--TLLATGGGICDQTVRLWNSMNGKEKCHVKTDS-------------------------------- 381 (507)
Q Consensus 337 ~~v~~~~~-~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-------------------------------- 381 (507)
....-+.. ..+++ .+++.... +|.+.++|-.+++.+...+...
T Consensus 308 ~~~~l~d~~~~~G~~~~~v~~~~k--~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i 385 (596)
T d1w6sa_ 308 NVMMLSEQKDKDGKARKLLTHPDR--NGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDI 385 (596)
T ss_dssp CCCEEEEEECTTSCEEEEEEEECT--TSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEE
T ss_pred cceeeeeccccccccccceecccc--ccceeeecCCCCceeeeccccccccccccccccccccccCccccccCCccceeE
Confidence 11111111 12333 34444443 8899999999988765332100
Q ss_pred --------CeEEEEECCCCCeEEEEec-------------------------------------cCCCeEEEEeCCCccE
Q psy8285 382 --------QVTSILWSEQYRELVTSHG-------------------------------------KQDCSLKMWEYPRLHL 416 (507)
Q Consensus 382 --------~i~~~~~s~~~~~l~~~~g-------------------------------------~~d~~i~v~d~~~~~~ 416 (507)
.-...+++|+...+++... ..-|.|.-||..+++.
T Consensus 386 ~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~ 465 (596)
T d1w6sa_ 386 CPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDY 465 (596)
T ss_dssp SSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCE
T ss_pred ecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccccCcccCcccCCCcceEEEEeCCCCce
Confidence 0012355555555443100 0015677888888887
Q ss_pred EEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecC
Q psy8285 417 IEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVG 466 (507)
Q Consensus 417 ~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 466 (507)
+..... ..+..+-..+-.+.+++.|+.||.++.+|..+++.+-+.+...
T Consensus 466 ~W~~~~-~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~ 514 (596)
T d1w6sa_ 466 KWEKME-RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS 514 (596)
T ss_dssp EEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ecccCC-CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCC
Confidence 766542 2222222233457788889999999999999999998776543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.38 E-value=0.0074 Score=53.86 Aligned_cols=256 Identities=11% Similarity=0.039 Sum_probs=126.4
Q ss_pred eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe--ecCccEEEEEe-eCC
Q psy8285 186 SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR--THMHQVIAMCW-NGN 262 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~-~~~ 262 (507)
.+.+||+.++...........+.......++.+++..++.++.....+.+||..+..-...-. ........... |++
T Consensus 53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~ 132 (387)
T d1k3ia3 53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 132 (387)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCc
Confidence 377999998876543332211344455678889998888874455789999998765433211 11112223333 788
Q ss_pred EEEEEecC------CeEEEEECCCCCcCc--------eeeecCC-----CceEEEEEcCCCCEEEEEe-CCcEEEEEcCC
Q psy8285 263 LLSCGTIG------GNILHYDVRTHSDYP--------TAITREG-----DVVCGLKWSPNGRYLASGS-NNTVKIWDFRQ 322 (507)
Q Consensus 263 ~l~~~~~d------g~i~i~d~~~~~~~~--------~~~~~~~-----~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~ 322 (507)
+++.++.+ ..+.+||..+.+-.. .....+. ..-..+...++++.+..+. .+.+.+++...
T Consensus 133 v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~ 212 (387)
T d1k3ia3 133 VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS 212 (387)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTT
T ss_pred eeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCccc
Confidence 88888753 358899988753100 0000000 0011123345677666665 36666666655
Q ss_pred CCCCCCeeeec-C---CCC--CeeEEEEccCCCcEEEEEccCC------CCeEEEEeCCCCC---eeeee----ecCCCe
Q psy8285 323 LDAKRPQVNNQ-C---HLS--AVKAIAWCPWEPTLLATGGGIC------DQTVRLWNSMNGK---EKCHV----KTDSQV 383 (507)
Q Consensus 323 ~~~~~~~~~~~-~---~~~--~v~~~~~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~---~~~~~----~~~~~i 383 (507)
.... ...... . +.. .-.++.+......+++.++... .....+.++.... ..... .....-
T Consensus 213 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~ 291 (387)
T d1k3ia3 213 GDVK-SAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTF 291 (387)
T ss_dssp CEEE-EEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBS
T ss_pred CcEe-eccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecccccccccc
Confidence 3100 000000 0 111 1122333333335666654211 1123333332211 11111 111223
Q ss_pred EEEEECCCCCeEEEEeccCC-----------CeEEEEeCCCcc--EEEEeeccccceeEEEECCCCCEEEEEeC
Q psy8285 384 TSILWSEQYRELVTSHGKQD-----------CSLKMWEYPRLH--LIEELKIHQERILSAVLSPDQTCVAAASA 444 (507)
Q Consensus 384 ~~~~~s~~~~~l~~~~g~~d-----------~~i~v~d~~~~~--~~~~~~~~~~~i~~~~~s~~~~~l~s~~~ 444 (507)
.+....++++.+++ |+.+ ..+.+||..+.+ .+..+......=......+||+.++.|+.
T Consensus 292 ~~~~~~~dg~i~v~--GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 292 HTSVVLPDGSTFIT--GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CEEEECTTSCEEEE--CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ceeeeccCCeEEEE--CCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 35566689998887 4432 147889976543 22222111100012335789999988874
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.37 E-value=0.06 Score=50.39 Aligned_cols=81 Identities=9% Similarity=0.094 Sum_probs=54.8
Q ss_pred CeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccce-eEEEECCCCC-E
Q psy8285 361 QTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERI-LSAVLSPDQT-C 438 (507)
Q Consensus 361 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i-~~~~~s~~~~-~ 438 (507)
+.+.-+|+.+++.+...........-.++-.+..+++ |+.||.++.+|..+|+.+.+++...... .-+.|..+|+ +
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~--G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy 515 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ--GTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEE--ECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 5788899999998887766543332223335667777 8899999999999999999887432211 1144556775 5
Q ss_pred EEEEe
Q psy8285 439 VAAAS 443 (507)
Q Consensus 439 l~s~~ 443 (507)
|+..+
T Consensus 516 v~v~a 520 (560)
T d1kv9a2 516 VAIMA 520 (560)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.20 E-value=0.073 Score=47.96 Aligned_cols=245 Identities=11% Similarity=0.007 Sum_probs=130.3
Q ss_pred cceeeeeeCCCC-EEEEE--cCC----eEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCC--------
Q psy8285 166 FYTSGLDWGYHD-TLAVA--LDT----SVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCT-------- 230 (507)
Q Consensus 166 ~~i~~~~~s~~~-~~~~~--~~~----~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~d-------- 230 (507)
+.+..+++||++ .++.+ .+| .|+++|+.+++..... ++ ......++|.++++.|+.. ..+
T Consensus 125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-i~---~~~~~~~~W~~D~~~~~Y~-~~~~~~~~~~~ 199 (430)
T d1qfma1 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-LE---RVKFSCMAWTHDGKGMFYN-AYPQQDGKSDG 199 (430)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-EE---EECSCCEEECTTSSEEEEE-ECCCCSSCCSS
T ss_pred ceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-cc---cccccceEEcCCCCEEEEE-EeccccCcccc
Confidence 445668889998 55544 333 7999999999875432 21 1223578999999988765 322
Q ss_pred --------CcEEEEeCCCcee--EEEEeecCc--cEEEEEe--eCCEEEEEec---CCe--EEEEECCCCCcC------c
Q psy8285 231 --------EYIDLWHEQEERL--IQKLRTHMH--QVIAMCW--NGNLLSCGTI---GGN--ILHYDVRTHSDY------P 285 (507)
Q Consensus 231 --------g~i~iwd~~~~~~--~~~~~~~~~--~v~~~~~--~~~~l~~~~~---dg~--i~i~d~~~~~~~------~ 285 (507)
..|..+.+.+... ...+..... .+..+.. ++++++.... +.. +.+.|+...... .
T Consensus 200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 279 (430)
T d1qfma1 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (430)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccce
Confidence 2577777766432 233333322 2434444 6777654432 223 444555432211 1
Q ss_pred ee-eecCCCceEEEEEcCCCCEEEEEe----CCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCC
Q psy8285 286 TA-ITREGDVVCGLKWSPNGRYLASGS----NNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICD 360 (507)
Q Consensus 286 ~~-~~~~~~~v~~~~~~~~~~~l~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d 360 (507)
.. ......... ..-+.++.+++... ++.|...++...........+..+...+..-.+...+.++++......-
T Consensus 280 ~~~~~~~~~~~~-~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~ 358 (430)
T d1qfma1 280 VKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVK 358 (430)
T ss_dssp EEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTE
T ss_pred eEeecccccceE-EEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCE
Confidence 11 122222222 22233334444443 2667677776542211122233344445444444445466665543113
Q ss_pred CeEEEEeCCCCCeeeeeecC-CCeEEEEECCCCCeEEEE--eccCCCeEEEEeCCCccE
Q psy8285 361 QTVRLWNSMNGKEKCHVKTD-SQVTSILWSEQYRELVTS--HGKQDCSLKMWEYPRLHL 416 (507)
Q Consensus 361 ~~i~i~d~~~~~~~~~~~~~-~~i~~~~~s~~~~~l~~~--~g~~d~~i~v~d~~~~~~ 416 (507)
..|++++..+++........ +.+..+...++...+... +-..-.+++-+|+.+++.
T Consensus 359 ~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 359 NTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred eEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 57899999888765544333 456666666666555442 122346889999988753
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.15 E-value=0.033 Score=52.59 Aligned_cols=80 Identities=18% Similarity=0.080 Sum_probs=54.1
Q ss_pred CCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccc-eeEEEECCCCC-
Q psy8285 360 DQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQER-ILSAVLSPDQT- 437 (507)
Q Consensus 360 d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~-i~~~~~s~~~~- 437 (507)
-|.|.-||+.+++.+..........+-.++-.+..+++ |+.||.++.+|.++|+.+.++...... -.-+.|..+|+
T Consensus 452 ~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~--G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQ 529 (596)
T d1w6sa_ 452 LGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFY--GTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ 529 (596)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cceEEEEeCCCCceecccCCCCCCccceeEecCCEEEE--ECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEE
Confidence 36899999999998877655433322223335777777 889999999999999999988643221 11134555776
Q ss_pred EEEE
Q psy8285 438 CVAA 441 (507)
Q Consensus 438 ~l~s 441 (507)
|++.
T Consensus 530 Yvav 533 (596)
T d1w6sa_ 530 YVAI 533 (596)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.09 E-value=0.12 Score=48.45 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=52.8
Q ss_pred CeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeecccccee-EEEECCCCC-E
Q psy8285 361 QTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERIL-SAVLSPDQT-C 438 (507)
Q Consensus 361 ~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~-~~~~s~~~~-~ 438 (507)
|.+.-||+.+++.+.......+...-..+-.+..+++ |+.||.++.||.++|+.+.++........ -+.|..+|+ |
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~--G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY 534 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQ--GTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY 534 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEE--ECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 4677888888888877766543222223335777887 88999999999999999998864322111 144556776 4
Q ss_pred EEE
Q psy8285 439 VAA 441 (507)
Q Consensus 439 l~s 441 (507)
++.
T Consensus 535 v~v 537 (573)
T d1kb0a2 535 VSV 537 (573)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.00 E-value=0.069 Score=44.18 Aligned_cols=195 Identities=11% Similarity=0.133 Sum_probs=122.0
Q ss_pred CCCC-EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCc-eeEEEEeecC
Q psy8285 174 GYHD-TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEE-RLIQKLRTHM 251 (507)
Q Consensus 174 s~~~-~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~-~~~~~~~~~~ 251 (507)
+|.. ++|.-....++++|+++.+..+...+ ..+|.-=.|-.+. .|+.. .+..|+-|++... .+.+.+..|.
T Consensus 71 hP~~~IiALrag~~LQiFnletK~klks~~~----~e~VvfWkWis~~-~L~lV--T~taVYHW~~~g~s~P~k~fdR~~ 143 (327)
T d1utca2 71 NPASKVIALKAGKTLQIFNIEMKSKMKAHTM----TDDVTFWKWISLN-TVALV--TDNAVYHWSMEGESQPVKMFDRHS 143 (327)
T ss_dssp CSSSSEEEEEETTEEEEEETTTTEEEEEEEC----SSCCCEEEESSSS-EEEEE--CSSEEEEEESSSSCCCEEEEECCG
T ss_pred CCCCcEEEEecCCeEEEEehhHhhhhceEEc----CCCcEEEEecCCC-EEEEE--cCCceEEEcccCCCCchhhhhhcc
Confidence 4544 77776788999999999998888885 4467777887554 55555 4778999999543 4555555443
Q ss_pred c----cEEEEEe--eCCEEEEEe---c----CCeEEEEECCCCCcCceeeecCCCceEEEEEcCCC---CEEEEEe---C
Q psy8285 252 H----QVIAMCW--NGNLLSCGT---I----GGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNG---RYLASGS---N 312 (507)
Q Consensus 252 ~----~v~~~~~--~~~~l~~~~---~----dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~---d 312 (507)
. .|..... +.++++..+ . .|.+.+|..+... .+.+.+|......+.+.-+. ++++.+. .
T Consensus 144 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~--sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 221 (327)
T d1utca2 144 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 221 (327)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE--EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred cccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc--CccccceeeeeEEEEcCCCCCCceEEEEEECCCC
Confidence 2 3333333 455554432 1 3678899988643 66777776555444443221 3444444 2
Q ss_pred -CcEEEEEcCCCCC-CCCe----eee----cCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecC
Q psy8285 313 -NTVKIWDFRQLDA-KRPQ----VNN----QCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTD 380 (507)
Q Consensus 313 -~~i~i~d~~~~~~-~~~~----~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~ 380 (507)
+.+++.++..... ..+. ..+ ....+-..++..++.-..+++... -|.+++||+.++.++..-+-.
T Consensus 222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK---~G~i~lyDleTgt~i~~nRIs 296 (327)
T d1utca2 222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK---YGYIHLYDLETGTCIYMNRIS 296 (327)
T ss_dssp EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET---TSEEEEEETTTCCEEEEEECC
T ss_pred CcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec---CcEEEEEEcccccEEEEeecC
Confidence 6899999876421 1111 111 111233457777776655666554 899999999999998766544
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.83 E-value=0.2 Score=46.91 Aligned_cols=63 Identities=16% Similarity=0.119 Sum_probs=47.0
Q ss_pred CeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCCcEEEEecCCCCcccceeecCC
Q psy8285 404 CSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADETISIWNCFPRDKKRKARQVGS 467 (507)
Q Consensus 404 ~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 467 (507)
|.|.-+|+.+++.+.+...+. ++..-..+-.+.++++++.||.++.+|..+++.+-..+....
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~ 528 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG 528 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred CeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCC
Confidence 568888888988888776432 233222344677888899999999999999999987765443
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.36 E-value=0.18 Score=43.48 Aligned_cols=171 Identities=12% Similarity=0.046 Sum_probs=92.9
Q ss_pred CCeEEEEECCCCCcCceeeecCC-------CceEEEEE--cCCCCE-EEEEe----CCcEEEEEcCCCCCC-CCeeeec-
Q psy8285 270 GGNILHYDVRTHSDYPTAITREG-------DVVCGLKW--SPNGRY-LASGS----NNTVKIWDFRQLDAK-RPQVNNQ- 333 (507)
Q Consensus 270 dg~i~i~d~~~~~~~~~~~~~~~-------~~v~~~~~--~~~~~~-l~~~~----d~~i~i~d~~~~~~~-~~~~~~~- 333 (507)
.|.|.++|+.+.......+.... -....+.+ .++++. |++.. ..+|.+|++...... .-+....
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~ 146 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 146 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence 48899999887543222221111 12344443 446653 44433 267889988754210 1111111
Q ss_pred CCCCCeeEEEEccCCCcEEEEEccCC-------------CCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEec
Q psy8285 334 CHLSAVKAIAWCPWEPTLLATGGGIC-------------DQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHG 400 (507)
Q Consensus 334 ~~~~~v~~~~~~~~~~~~~~~~~~~~-------------d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g 400 (507)
......+.+.+..++ .++++-.... -....+|....++.......-...+.++++||+++|+++ .
T Consensus 147 ~~~~~pNDv~~~~~g-~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa-~ 224 (340)
T d1v04a_ 147 KLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIA-E 224 (340)
T ss_dssp TTCSSEEEEEEEETT-EEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEE-E
T ss_pred ccccCccceEEecCC-CEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEE-e
Confidence 122457888888888 4555531000 123334443344443333434678999999999999886 5
Q ss_pred cCCCeEEEEeCCCccEEEEee--ccccceeEEEECCC-CCEEEEE
Q psy8285 401 KQDCSLKMWEYPRLHLIEELK--IHQERILSAVLSPD-QTCVAAA 442 (507)
Q Consensus 401 ~~d~~i~v~d~~~~~~~~~~~--~~~~~i~~~~~s~~-~~~l~s~ 442 (507)
+..+.|++|++.....+.... .-....-.+.+.++ |.+.+.+
T Consensus 225 t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 225 LLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred CCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 678899999987543222211 12344566788764 4444443
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.21 E-value=0.31 Score=45.57 Aligned_cols=237 Identities=8% Similarity=-0.037 Sum_probs=118.3
Q ss_pred eEEEEECCCCceeEEEecCCCCCCc---------eEEEEEccCC--CeEEEEeCCCCcEEEEeCCCceeEEEEeecCccE
Q psy8285 186 SVYTWNTKTNKTQLLVEYPTYDNAY---------ISCVAWKPRT--TDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQV 254 (507)
Q Consensus 186 ~i~iw~~~~~~~~~~~~~~~~~~~~---------v~~~~~~~~~--~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 254 (507)
.+.-.|..+++..-.++... |.-. +..+...+.. ..++.. +.++.+.++|..+++.+..........
T Consensus 292 SvvAld~~tG~~~W~~q~~~-~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~-~k~g~~~vldr~tG~~i~~~~~~~~~~ 369 (582)
T d1flga_ 292 GQVGVDPSSGEVKWFYQHTP-NDAWDFSGNNELVLFDYKAKDGKIVKATAHA-DRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp EEEEECTTTCCEEEEEESST-TCCSCCCCCCCCEEEEEECSSSCEEEEEEEE-CTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred eeEEecccchhhhhcccccc-cccccccccccccccccccccccccceeEee-cccccEEeecccCCcccccccccCccc
Confidence 46667777787766665543 3211 1222222221 234445 899999999999999887665544433
Q ss_pred EEEEeeCCEEEEEecCCeEEEEECCCCCc-Cc-eeeecC--CCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCe
Q psy8285 255 IAMCWNGNLLSCGTIGGNILHYDVRTHSD-YP-TAITRE--GDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQ 329 (507)
Q Consensus 255 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~-~~~~~~--~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~ 329 (507)
.....+.........++............ .. ...... ...-...+++|+..++.... +....++..... .
T Consensus 370 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~---~-- 444 (582)
T d1flga_ 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVS---Y-- 444 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCC---C--
T ss_pred cccccccccccceeccccccccccccccccceEEECCCccCCcccccceecCCCCceeeecccccccccccccc---c--
Confidence 33332211000001111100000000000 00 011110 11123456777766555544 433333322211 0
Q ss_pred eeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEE
Q psy8285 330 VNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMW 409 (507)
Q Consensus 330 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~ 409 (507)
..+...........| ......|.|.-+|+.+++.+.......++..-..+..+..+++ |+.||.++.+
T Consensus 445 --~~g~~~~~~~~~~~~--------~~~~~~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~--Gt~dg~l~A~ 512 (582)
T d1flga_ 445 --TKGSAYLGMGFRIKR--------MYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFT--GTGDGYFKAF 512 (582)
T ss_dssp --CTTSCCCCEEEEEEE--------SCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEE--ECTTSEEEEE
T ss_pred --cccccccccCccccc--------cccCCCCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEE--eCCCCeEEEE
Confidence 000000001111111 1111257899999999999888776654433233446777777 8899999999
Q ss_pred eCCCccEEEEeeccccce-eEEEECCCCC-EEEE
Q psy8285 410 EYPRLHLIEELKIHQERI-LSAVLSPDQT-CVAA 441 (507)
Q Consensus 410 d~~~~~~~~~~~~~~~~i-~~~~~s~~~~-~l~s 441 (507)
|..+|+.+.+++...... .-+.|..+|+ |++.
T Consensus 513 Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i 546 (582)
T d1flga_ 513 DAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGV 546 (582)
T ss_dssp ETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred ECCCCcEeEEEECCCCccccCEEEEECCEEEEEE
Confidence 999999999887432211 1155667885 4544
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.48 E-value=0.64 Score=39.76 Aligned_cols=195 Identities=12% Similarity=0.168 Sum_probs=108.7
Q ss_pred cCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEe------eC--CEEEEEe-cC---CeEEEEECCCCCcCc
Q psy8285 218 PRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCW------NG--NLLSCGT-IG---GNILHYDVRTHSDYP 285 (507)
Q Consensus 218 ~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~------~~--~~l~~~~-~d---g~i~i~d~~~~~~~~ 285 (507)
|+...++.+ ..++-|++||++ |+.++.+. .+++..+.. ++ .-+++++ ++ ..|.+|.+.......
T Consensus 38 p~~SlI~gT-dK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l 113 (353)
T d1h6la_ 38 PQNSKLITT-NKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (353)
T ss_dssp GGGCEEEEE-ETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEE
T ss_pred cCccEEEEE-cCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccc
Confidence 344566655 777779999985 77777664 234444433 22 2344444 22 357788775432111
Q ss_pred eeee-------cCCCceEEEEE--cCC-CCEEEEEe--CCcEEEEEcCCCCCC----CCeeeecCCCCCeeEEEEccCCC
Q psy8285 286 TAIT-------REGDVVCGLKW--SPN-GRYLASGS--NNTVKIWDFRQLDAK----RPQVNNQCHLSAVKAIAWCPWEP 349 (507)
Q Consensus 286 ~~~~-------~~~~~v~~~~~--~~~-~~~l~~~~--d~~i~i~d~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~ 349 (507)
..+. .....++.+++ ++. +.+.+... +|.+..|.+...... +.+..+. -...+..+.+.+...
T Consensus 114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~ 192 (353)
T d1h6la_ 114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYG 192 (353)
T ss_dssp EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTT
T ss_pred ccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCC
Confidence 1111 11224666766 554 55544444 399988877543211 2233333 456788999998887
Q ss_pred cEEEEEccCCCCeEEEEeCCCC--C---eeeeeec---CCCeEEEEEC--CCCC-eEEEEeccCCCeEEEEeCCCc-cEE
Q psy8285 350 TLLATGGGICDQTVRLWNSMNG--K---EKCHVKT---DSQVTSILWS--EQYR-ELVTSHGKQDCSLKMWEYPRL-HLI 417 (507)
Q Consensus 350 ~~~~~~~~~~d~~i~i~d~~~~--~---~~~~~~~---~~~i~~~~~s--~~~~-~l~~~~g~~d~~i~v~d~~~~-~~~ 417 (507)
.|+++-. +.-+..++.... . .+..... ...+..+++- .++. ||+++ ...+++..|||.... +.+
T Consensus 193 ~LyisEE---~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivS-sQG~n~f~vydr~~~~~~~ 268 (353)
T d1h6la_ 193 SLYIAEE---DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLAS-SQGNSSYAIYERQGQNKYV 268 (353)
T ss_dssp EEEEEET---TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEE-EGGGTEEEEEESSTTCCEE
T ss_pred cEEEecC---ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEE-cCCCCeEEEEecCCCcccc
Confidence 7777543 666666665422 2 2212212 1456666654 3333 66665 345789999998763 556
Q ss_pred EEee
Q psy8285 418 EELK 421 (507)
Q Consensus 418 ~~~~ 421 (507)
..+.
T Consensus 269 g~F~ 272 (353)
T d1h6la_ 269 ADFQ 272 (353)
T ss_dssp EEEE
T ss_pred ceEE
Confidence 5553
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.15 E-value=0.82 Score=39.06 Aligned_cols=192 Identities=13% Similarity=0.117 Sum_probs=109.5
Q ss_pred CCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEc------CCCCEEEEEeC-----CcEEEEEcCCCCCCCCe
Q psy8285 261 GNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWS------PNGRYLASGSN-----NTVKIWDFRQLDAKRPQ 329 (507)
Q Consensus 261 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~l~~~~d-----~~i~i~d~~~~~~~~~~ 329 (507)
..+++.....+-|++||+.... ...+. .+.++.+..- .....++++++ ..|.+|.+.... ..+
T Consensus 40 ~SlI~gTdK~~Gl~vYdL~G~~--l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~--~~l 113 (353)
T d1h6la_ 40 NSKLITTNKKSGLAVYSLEGKM--LHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--GTL 113 (353)
T ss_dssp GCEEEEEETTSCCEEEETTCCE--EEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTT--TEE
T ss_pred ccEEEEEcCcCCEEEEcCCCcE--EEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcc--ccc
Confidence 3466666667779999997432 33332 3455554433 22334566652 257788775321 122
Q ss_pred eeecC-------CCCCeeEEEE--ccCCCc-EEEEEccCCCCeEEEEeCC---CC----CeeeeeecCCCeEEEEECCCC
Q psy8285 330 VNNQC-------HLSAVKAIAW--CPWEPT-LLATGGGICDQTVRLWNSM---NG----KEKCHVKTDSQVTSILWSEQY 392 (507)
Q Consensus 330 ~~~~~-------~~~~v~~~~~--~~~~~~-~~~~~~~~~d~~i~i~d~~---~~----~~~~~~~~~~~i~~~~~s~~~ 392 (507)
..+.. ....++.+++ +|.... .+++... +|.+..|.+. .+ +.++.+....++..|.+.+..
T Consensus 114 ~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k--~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~ 191 (353)
T d1h6la_ 114 QSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGK--EGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEY 191 (353)
T ss_dssp EECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECS--SSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTT
T ss_pred ccccccccccccccCcceEEEEEecCCCCeEEEEEEcC--CceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCC
Confidence 22211 1224666776 665443 3344433 8888888663 33 345566777889999999999
Q ss_pred CeEEEEeccCCCeEEEEeCCC-----ccEEEEeec--cccceeEEEEC--CCCC-EEEEE-eCCCcEEEEecCCC-Cccc
Q psy8285 393 RELVTSHGKQDCSLKMWEYPR-----LHLIEELKI--HQERILSAVLS--PDQT-CVAAA-SADETISIWNCFPR-DKKR 460 (507)
Q Consensus 393 ~~l~~~~g~~d~~i~v~d~~~-----~~~~~~~~~--~~~~i~~~~~s--~~~~-~l~s~-~~dg~i~iw~~~~~-~~~~ 460 (507)
..|++ +-++.-|..++..- ...+....+ ....+-.|+.- .++. +|+++ -.+.+..+|+..+. +.+.
T Consensus 192 ~~Lyi--sEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g 269 (353)
T d1h6la_ 192 GSLYI--AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVA 269 (353)
T ss_dssp TEEEE--EETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred CcEEE--ecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccc
Confidence 99999 77777776666541 222222222 23456666643 3333 55444 45788999998764 4443
Q ss_pred ce
Q psy8285 461 KA 462 (507)
Q Consensus 461 ~~ 462 (507)
.+
T Consensus 270 ~F 271 (353)
T d1h6la_ 270 DF 271 (353)
T ss_dssp EE
T ss_pred eE
Confidence 33
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.94 E-value=1 Score=38.97 Aligned_cols=169 Identities=10% Similarity=-0.023 Sum_probs=103.7
Q ss_pred eeeeeeCCC-CEEEEEcCCeEEEEECCC-----------CceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEE
Q psy8285 168 TSGLDWGYH-DTLAVALDTSVYTWNTKT-----------NKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDL 235 (507)
Q Consensus 168 i~~~~~s~~-~~~~~~~~~~i~iw~~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~i 235 (507)
.+.++.++. |+++++....+.|...+. ......... ..|..++|+.+ .|++. .++.+..
T Consensus 39 ~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~i-----p~v~~vafs~d--~l~v~--~~~~l~~ 109 (381)
T d1xipa_ 39 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEI-----PDVIFVCFHGD--QVLVS--TRNALYS 109 (381)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEEC-----TTEEEEEEETT--EEEEE--ESSEEEE
T ss_pred cceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCC-----CCeEEEEeeCC--EEEEE--eCCCEEE
Confidence 456888875 477666666788877422 112222222 35899999744 55555 4667888
Q ss_pred EeCCCceeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCcee----eecCCCceEEEEEcCCCCEEEEEe
Q psy8285 236 WHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTA----ITREGDVVCGLKWSPNGRYLASGS 311 (507)
Q Consensus 236 wd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~ 311 (507)
++...-........-..++..+.++...++....++.+.++++......... ...-...+.+++|++.|+.++++.
T Consensus 110 ~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 110 LDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred EEeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence 8877655555555566778889998888888999999999999876521110 011235678888888888887765
Q ss_pred CCcEEEE-EcCCCCCCCCeeeecCCCCCeeEEEEccCC
Q psy8285 312 NNTVKIW-DFRQLDAKRPQVNNQCHLSAVKAIAWCPWE 348 (507)
Q Consensus 312 d~~i~i~-d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 348 (507)
.+...+- ++... ..+.........|.++.|-.+.
T Consensus 190 g~~~q~k~~i~~~---~~~~~p~~~~~~v~sI~WL~~~ 224 (381)
T d1xipa_ 190 NGEMEKQFEFSLP---SELEELPVEEYSPLSVTILSPQ 224 (381)
T ss_dssp TTEEEEEEEECCC---HHHHTSCTTTSEEEEEEESSSS
T ss_pred CCceeeccCCCCc---cccCCCcCCCcceeEEEEecCc
Confidence 3322221 22211 1111111234568899998654
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.36 E-value=1.4 Score=38.04 Aligned_cols=136 Identities=13% Similarity=0.067 Sum_probs=83.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCCCCe
Q psy8285 294 VVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMNGKE 373 (507)
Q Consensus 294 ~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~ 373 (507)
.|..++|+.| .++...++.+..++.... ........-..++..+.++|. .+++... ++.+.++++.+++.
T Consensus 88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l---~~~~~~~~~~~~~~~~~~~p~--~~~l~~~---~~~~~~~~l~~~~~ 157 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVSTRNALYSLDLEEL---SEFRTVTSFEKPVFQLKNVNN--TLVILNS---VNDLSALDLRTKST 157 (381)
T ss_dssp TEEEEEEETT--EEEEEESSEEEEEESSST---TCEEEEEECSSCEEEEEECSS--EEEEEET---TSEEEEEETTTCCE
T ss_pred CeEEEEeeCC--EEEEEeCCCEEEEEeecc---ccccccccccccccceecCCc--eeEEEec---CCCEEEEEeccCcc
Confidence 5888999755 566666678888888765 444444445567889998885 3555554 89999999988864
Q ss_pred eeee------ecCCCeEEEEECCCCCeEEEEeccCCCeEEEE-eCCCccEEEEeeccccceeEEEECCCCCEEEEE
Q psy8285 374 KCHV------KTDSQVTSILWSEQYRELVTSHGKQDCSLKMW-EYPRLHLIEELKIHQERILSAVLSPDQTCVAAA 442 (507)
Q Consensus 374 ~~~~------~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~-d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~ 442 (507)
.... .-.....+++|++.|+.+++ +.. +...+- ++.....+.........+.++.|-.+..++++-
T Consensus 158 ~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~--~~g-~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 158 KQLAQNVTSFDVTNSQLAVLLKDRSFQSFA--WRN-GEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEEESEEEEEECSSEEEEEETTSCEEEEE--EET-TEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred ccccCCcceEEecCCceEEEEeCCcEEEEE--eCC-CceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 3322 22356788888888888877 421 112111 111111111111133467889998777766654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=94.31 E-value=0.66 Score=40.38 Aligned_cols=158 Identities=13% Similarity=0.012 Sum_probs=89.5
Q ss_pred EEEEEcCCCCEEEEEe-C-----C------cEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeE
Q psy8285 296 CGLKWSPNGRYLASGS-N-----N------TVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTV 363 (507)
Q Consensus 296 ~~~~~~~~~~~l~~~~-d-----~------~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i 363 (507)
.......+|++++.|+ + + .+.+||..++...........+........+.+++ .+++.++. ....+
T Consensus 23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g-~i~v~Gg~-~~~~~ 100 (387)
T d1k3ia3 23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNG-QIVVTGGN-DAKKT 100 (387)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTS-CEEEECSS-STTCE
T ss_pred EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCC-cEEEeecC-CCcce
Confidence 3344556788877766 1 1 37799998864322222223333344566788888 56666542 24689
Q ss_pred EEEeCCCCCeeee--eecCCCeEEEEECCCCCeEEEEeccCC------CeEEEEeCCCccEEEE--eec-------ccc-
Q psy8285 364 RLWNSMNGKEKCH--VKTDSQVTSILWSEQYRELVTSHGKQD------CSLKMWEYPRLHLIEE--LKI-------HQE- 425 (507)
Q Consensus 364 ~i~d~~~~~~~~~--~~~~~~i~~~~~s~~~~~l~~~~g~~d------~~i~v~d~~~~~~~~~--~~~-------~~~- 425 (507)
.+||..+..-... +.....-..++..+||+.++. |+.+ ..+.+||..+.+-... ... +..
T Consensus 101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~--GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~ 178 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTI--GGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGL 178 (387)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEE--CCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGG
T ss_pred eEecCccCcccccccccccccccceeeecCCceeee--ccccccccccceeeeecCCCCceeecCCCcccccccccccce
Confidence 9999887654322 222233456777889998888 4322 3689999877542211 100 000
Q ss_pred ----ceeEEEECCCCCEEEEEeCCCcEEEEecCCCC
Q psy8285 426 ----RILSAVLSPDQTCVAAASADETISIWNCFPRD 457 (507)
Q Consensus 426 ----~i~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 457 (507)
.-..+...++|+.++.+..++.+.+++..+..
T Consensus 179 ~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~ 214 (387)
T d1k3ia3 179 YRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD 214 (387)
T ss_dssp GTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred eeccceeEEEEeCCCCEEEecCcCCcEEecCcccCc
Confidence 01112234567777777766667776666543
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.02 E-value=1.3 Score=36.41 Aligned_cols=215 Identities=11% Similarity=0.074 Sum_probs=93.2
Q ss_pred cEEEEeCCCceeEEE--EeecCccEEEEEeeCCEEEEEecC---------CeEEEEECCCCCcCc-eeeecCCCceEEEE
Q psy8285 232 YIDLWHEQEERLIQK--LRTHMHQVIAMCWNGNLLSCGTIG---------GNILHYDVRTHSDYP-TAITREGDVVCGLK 299 (507)
Q Consensus 232 ~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~-~~~~~~~~~v~~~~ 299 (507)
.+.+||+.+++-... +......-..+..++.+++.|+.. ..+.+||..+..... ..+........++.
T Consensus 20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~ 99 (288)
T d1zgka1 20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV 99 (288)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE
T ss_pred eEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceeccc
Confidence 578999988754332 222222223334466666666531 357788887643111 01111111111222
Q ss_pred EcCCCCEEEEEe-C-----CcEEEEEcCCCCCCCCeeeecCCCCC--eeEEEEccCCCcEEEEEccC---CCCeEEEEeC
Q psy8285 300 WSPNGRYLASGS-N-----NTVKIWDFRQLDAKRPQVNNQCHLSA--VKAIAWCPWEPTLLATGGGI---CDQTVRLWNS 368 (507)
Q Consensus 300 ~~~~~~~l~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~---~d~~i~i~d~ 368 (507)
.++++++.++ + .....+|..+. ........... -..+... ...+++.++.. ....+..||.
T Consensus 100 --~~~~i~~~gg~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~r~~~~~~~~--~~~~~~~GG~~~~~~~~~~~~~d~ 171 (288)
T d1zgka1 100 --IDGHIYAVGGSHGCIHHNSVERYEPERD----EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYP 171 (288)
T ss_dssp --ETTEEEEECCEETTEECCCEEEEETTTT----EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEET
T ss_pred --cceeeEEecceecccccceeeeeccccC----ccccccccccccccceeeee--eecceEecCcccccccceEEEeec
Confidence 2566666554 2 33455666543 11111111111 1112222 22455555421 1245788887
Q ss_pred CCCCeeeeeecC--CCeEEEEECCCCCeEEEEeccCC-----CeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEE
Q psy8285 369 MNGKEKCHVKTD--SQVTSILWSEQYRELVTSHGKQD-----CSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAA 441 (507)
Q Consensus 369 ~~~~~~~~~~~~--~~i~~~~~s~~~~~l~~~~g~~d-----~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s 441 (507)
.+.+....-... ....+.... .++.++. |+.+ .....+|..+.+....-.....+...-+...+++.++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~--GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~ 248 (288)
T d1zgka1 172 ERNEWRMITAMNTIRSGAGVCVL-HNCIYAA--GGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVL 248 (288)
T ss_dssp TTTEEEECCCCSSCCBSCEEEEE-TTEEEEE--CCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEE
T ss_pred cccccccccccccccccccccce-eeeEEEe--cCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEE
Confidence 765433221111 111122222 2344444 3323 35677887665443321111111111122236777777
Q ss_pred EeCCC-----cEEEEecCCCC
Q psy8285 442 ASADE-----TISIWNCFPRD 457 (507)
Q Consensus 442 ~~~dg-----~i~iw~~~~~~ 457 (507)
|+.++ .+.+||+.+.+
T Consensus 249 GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 249 GGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp CCBCSSCBCCEEEEEETTTTE
T ss_pred ecCCCCeecceEEEEECCCCE
Confidence 76543 36777777643
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.71 E-value=1.8 Score=36.89 Aligned_cols=162 Identities=8% Similarity=-0.040 Sum_probs=93.5
Q ss_pred CCcEEEEeCCCceeEE-EE--eec-----CccEEEEEe----eCC-EEEEEe---cCCeEEEEECCCCCcCceee----e
Q psy8285 230 TEYIDLWHEQEERLIQ-KL--RTH-----MHQVIAMCW----NGN-LLSCGT---IGGNILHYDVRTHSDYPTAI----T 289 (507)
Q Consensus 230 dg~i~iwd~~~~~~~~-~~--~~~-----~~~v~~~~~----~~~-~l~~~~---~dg~i~i~d~~~~~~~~~~~----~ 289 (507)
.|.|.++|+.+.+... .+ .+. .-....++. ++. +|++.. ...+|.+|++.......... .
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~ 146 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 146 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence 4889999987653221 11 111 112345554 344 444443 34678888876543211111 1
Q ss_pred cCCCceEEEEEcCCCCEEEEEe----C------------CcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEE
Q psy8285 290 REGDVVCGLKWSPNGRYLASGS----N------------NTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLA 353 (507)
Q Consensus 290 ~~~~~v~~~~~~~~~~~l~~~~----d------------~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 353 (507)
......+.+.+..++.++++-. + ....+|..... ........-...+.++++|+++.+++
T Consensus 147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~----~~~~~~~~l~~pNGI~~s~d~~~lyV 222 (340)
T d1v04a_ 147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN----DVRVVAEGFDFANGINISPDGKYVYI 222 (340)
T ss_dssp TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS----CEEEEEEEESSEEEEEECTTSSEEEE
T ss_pred ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC----ceEEEcCCCCccceeEECCCCCEEEE
Confidence 2234578899988998888731 0 13344444443 22232223456789999999988888
Q ss_pred EEccCCCCeEEEEeCCCCCeee---eeecCCCeEEEEECCC-CCeEEE
Q psy8285 354 TGGGICDQTVRLWNSMNGKEKC---HVKTDSQVTSILWSEQ-YRELVT 397 (507)
Q Consensus 354 ~~~~~~d~~i~i~d~~~~~~~~---~~~~~~~i~~~~~s~~-~~~l~~ 397 (507)
+... .++|+.|++.....+. .+.....+-.+.+.++ |.+.++
T Consensus 223 a~t~--~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva 268 (340)
T d1v04a_ 223 AELL--AHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG 268 (340)
T ss_dssp EEGG--GTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred EeCC--CCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence 7765 8999999987554322 2333456778888765 444444
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.40 E-value=1.4 Score=36.31 Aligned_cols=216 Identities=12% Similarity=0.055 Sum_probs=98.2
Q ss_pred CeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCC---------CCcEEEEeCCCceeEEEE--eecCcc
Q psy8285 185 TSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTC---------TEYIDLWHEQEERLIQKL--RTHMHQ 253 (507)
Q Consensus 185 ~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~---------dg~i~iwd~~~~~~~~~~--~~~~~~ 253 (507)
..+.+||+.+++..++..++. ....-..+.. ++..++.+ +. -..+.+||..+.+....- ......
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~-~R~~~~~~~~--~~~iyv~G-G~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~ 94 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQV-PRSGLAGCVV--GGLLYAVG-GRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNR 94 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEEC-CEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBT
T ss_pred ceEEEEECCCCeEEECCCCCC-ccceeEEEEE--CCEEEEEe-CcccCCCCccccchhhhcccccccccccccccceecc
Confidence 368899999988777655543 2222233332 45455555 32 236778888765443321 111122
Q ss_pred EEEEEeeCCEEEEEecCCe-----EEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe-C-----CcEEEEEcCC
Q psy8285 254 VIAMCWNGNLLSCGTIGGN-----ILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS-N-----NTVKIWDFRQ 322 (507)
Q Consensus 254 v~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-d-----~~i~i~d~~~ 322 (507)
..++..+++.++.++.++. ...++..+..............-.++... ++++++.|+ + ..+..||...
T Consensus 95 ~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~ 173 (288)
T d1zgka1 95 IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPER 173 (288)
T ss_dssp CEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred eeccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeeccc
Confidence 2334446766666654443 44466655331110000011111112222 344555544 2 4578888765
Q ss_pred CCCCCCeeeecCC--CCCeeEEEEccCCCcEEEEEccCC---CCeEEEEeCCCCCeeeeeecC-CCe-EEEEECCCCCeE
Q psy8285 323 LDAKRPQVNNQCH--LSAVKAIAWCPWEPTLLATGGGIC---DQTVRLWNSMNGKEKCHVKTD-SQV-TSILWSEQYREL 395 (507)
Q Consensus 323 ~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~-~~i-~~~~~s~~~~~l 395 (507)
. ........ .....+.... +..+++.++... -.....+|..+.+....-... ... .+++. .+++.+
T Consensus 174 ~----~~~~~~~~~~~~~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~ 246 (288)
T d1zgka1 174 N----EWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIY 246 (288)
T ss_dssp T----EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEE
T ss_pred c----ccccccccccccccccccce--eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-ECCEEE
Confidence 4 11111111 1111122222 235666554211 135677887765543321111 111 12222 256666
Q ss_pred EEEeccCCC-----eEEEEeCCCc
Q psy8285 396 VTSHGKQDC-----SLKMWEYPRL 414 (507)
Q Consensus 396 ~~~~g~~d~-----~i~v~d~~~~ 414 (507)
+. |+.++ .+.+||+.+.
T Consensus 247 v~--GG~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 247 VL--GGYDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp EE--CCBCSSCBCCEEEEEETTTT
T ss_pred EE--ecCCCCeecceEEEEECCCC
Confidence 66 44333 4788888764
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=91.68 E-value=2.8 Score=34.14 Aligned_cols=222 Identities=9% Similarity=-0.020 Sum_probs=109.2
Q ss_pred CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEeecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCcee
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLRTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTA 287 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 287 (507)
...|..++-- ....++. . ||.|..|-.+....+..-......+..++......+.- .|+.+..|..........
T Consensus 25 ~~~i~~va~G--~~h~~al-~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~al-~dg~v~~wG~~~~gq~~~- 98 (273)
T d1jtdb_ 25 QSGVDAIAGG--YFHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTV- 98 (273)
T ss_dssp SSSEEEEEEC--SSEEEEE-E-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEEE-ETTEEEEEECCTTSTTCC-
T ss_pred CCCcEEEEcc--CCEEEEE-E-CCEEEEEeCCCCCceeeeecccccceEEecCCCceeee-eeeeeeccCCCcceeecc-
Confidence 4457777663 2334434 4 89999997655433222222334556666633333333 489999998765332111
Q ss_pred eecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEe
Q psy8285 288 ITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWN 367 (507)
Q Consensus 288 ~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d 367 (507)
.......+..++.... ..+...|+.+..|..... ............|..+.-.. +.++... ++.++.|-
T Consensus 99 ~~~~~~~~~~i~~~~~--~~~~~~dg~v~~~g~~~~---~~~~~~~~~~~~v~~~~~~~---~~~~~~~---~g~~~~~G 167 (273)
T d1jtdb_ 99 PAEARSGVDAIAAGAW--ASYALKDGKVIAWGDDSD---GQTTVPAEAQSGVTALDGGV---YTALAVK---NGGVIAWG 167 (273)
T ss_dssp CGGGGSSCCEEEEETT--EEEEEETTEEEEEECCTT---STTSCCGGGGSSEEEEEECS---SEEEEEE---TTEEEEEE
T ss_pred ccccccceeEEeeecc--cccccccccceecccCCC---CceeeeccCCceEEEEeccc---eeeeeec---ccceeEee
Confidence 1111223333443322 233334788888875443 11111111223454444322 2333333 78888886
Q ss_pred CCCCCe-eeeeecCCCeEEEEECCCCCeEEEEeccCCCeEEEEeCCCccEEEEeeccccceeEEEECCCCCEEEEEeCCC
Q psy8285 368 SMNGKE-KCHVKTDSQVTSILWSEQYRELVTSHGKQDCSLKMWEYPRLHLIEELKIHQERILSAVLSPDQTCVAAASADE 446 (507)
Q Consensus 368 ~~~~~~-~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i~v~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~s~~~dg 446 (507)
...... .........|..++... .+.++. .||.|+-|=....-++.........|..|+-.... .++. .||
T Consensus 168 ~~~~g~~~~~~~~~~~v~~Is~G~--~h~~~l---~dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~~-~~~l--~~g 239 (273)
T d1jtdb_ 168 DNYFGQTTVPAEAQSGVDDVAGGI--FHSLAL---KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL--KNG 239 (273)
T ss_dssp CCTTSTTSCCGGGSSSEEEEEECS--SEEEEE---ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE--ETT
T ss_pred cccCCcccccccccCCccceeccc--eeeEEE---ecCcEEEcCCCCCCccCCCccCCCCcEEEEeCcce-EEEE--ECC
Confidence 543322 22223335677776542 233321 37899999653322211111223456777654332 3333 389
Q ss_pred cEEEEecC
Q psy8285 447 TISIWNCF 454 (507)
Q Consensus 447 ~i~iw~~~ 454 (507)
.|..|=-.
T Consensus 240 ~v~~WG~~ 247 (273)
T d1jtdb_ 240 KVIAWGSS 247 (273)
T ss_dssp EEEEESTT
T ss_pred EEEEECCC
Confidence 99999644
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.23 E-value=3.8 Score=31.58 Aligned_cols=224 Identities=10% Similarity=0.014 Sum_probs=120.1
Q ss_pred EEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCC--CeEEEE-----eCCCCcEEEEeCCCceeEEEEeec
Q psy8285 178 TLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRT--TDLAVT-----NTCTEYIDLWHEQEERLIQKLRTH 250 (507)
Q Consensus 178 ~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~-----~~~dg~i~iwd~~~~~~~~~~~~~ 250 (507)
++.+...|.+.++-+..++..++.. .+|.... .|.. .++..+ |..-..+.+-++........+...
T Consensus 29 l~~~~seG~vni~~l~g~~~vkLtk------ePI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp 101 (313)
T d2hu7a1 29 LVVGFSEGSVNAYLYDGGETVKLNR------EPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV 101 (313)
T ss_dssp EEEEEETTEEEEEEESSSSCEECCS------SCCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred EEEEeccceEEEEEEeCCEEEEEec------ccccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence 4444589999999988887655432 3332221 1211 222222 011223444444422222223222
Q ss_pred -CccEEEEEe-eCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEe----C-CcEEEEEcCCC
Q psy8285 251 -MHQVIAMCW-NGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGS----N-NTVKIWDFRQL 323 (507)
Q Consensus 251 -~~~v~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----d-~~i~i~d~~~~ 323 (507)
.-+|.++++ +.+..++|+......+|-++.++.........-+-|+.+ .+++++..+ . ....+-|+.++
T Consensus 102 k~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI----~~d~I~G~g~~~g~~~sfF~adl~SG 177 (313)
T d2hu7a1 102 KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDI----RGDLIAGLGFFGGGRVSLFTSNLSSG 177 (313)
T ss_dssp CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEE----ETTEEEEEEEEETTEEEEEEEETTTE
T ss_pred ceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEec----cCCeEEEEeeecCCcceEEEEecccC
Confidence 256778888 466777888888888888887752111111122223332 244444322 1 23444455443
Q ss_pred CCCCCeeeecCCCCCeeEEEEccCCCcEEEEEccC-CCCeEEEEeCCCCCeeee-eec-------CCCeEEEEECCCCCe
Q psy8285 324 DAKRPQVNNQCHLSAVKAIAWCPWEPTLLATGGGI-CDQTVRLWNSMNGKEKCH-VKT-------DSQVTSILWSEQYRE 394 (507)
Q Consensus 324 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~-~~~-------~~~i~~~~~s~~~~~ 394 (507)
.+..+....+.++.....+.. .+ +++-++ .+....-+|+++++-... +.. ...|+-+-+.|+++.
T Consensus 178 ----~lri~tpkeGS~~~ay~~~gn-KV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L 251 (313)
T d2hu7a1 178 ----GLRVFDSGEGSFSSASISPGM-KV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRL 251 (313)
T ss_dssp ----EEEEECCSSEEEEEEEECTTS-CE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCE
T ss_pred ----CEEEecCCCCcccceeEccCc-ee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcE
Confidence 445555566677777788755 44 333210 023334568887764332 221 134667779999999
Q ss_pred EEEEeccCCCeEEEEeCCCccEEEEeec
Q psy8285 395 LVTSHGKQDCSLKMWEYPRLHLIEELKI 422 (507)
Q Consensus 395 l~~~~g~~d~~i~v~d~~~~~~~~~~~~ 422 (507)
++. +-.||.-++|. +++.+...++
T Consensus 252 ~ii--akrdG~s~lF~--nGk~in~p~G 275 (313)
T d2hu7a1 252 AVV--ARREGRSAVFI--DGERVEAPQG 275 (313)
T ss_dssp EEE--EEETTEEEEEE--TTEEECCCSS
T ss_pred EEE--EecCCchheee--cceEecCCCC
Confidence 777 67899999987 5666655443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=87.91 E-value=8.4 Score=33.98 Aligned_cols=106 Identities=10% Similarity=0.120 Sum_probs=60.2
Q ss_pred CCceEEEEEcCCCCEEEEEe-CCcEEEEEcCCCCCCCCeeee------cCCCCCeeEEEEccC---CCcEEEEEccC---
Q psy8285 292 GDVVCGLKWSPNGRYLASGS-NNTVKIWDFRQLDAKRPQVNN------QCHLSAVKAIAWCPW---EPTLLATGGGI--- 358 (507)
Q Consensus 292 ~~~v~~~~~~~~~~~l~~~~-d~~i~i~d~~~~~~~~~~~~~------~~~~~~v~~~~~~~~---~~~~~~~~~~~--- 358 (507)
-...++++|.||++++++-- .|.|++++..++.. +.+..+ ..-+.....|+++|+ ..+++++....
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~-~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~ 104 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcE-eecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCC
Confidence 35667999999999998885 59999998776521 111111 122356788999985 33454432100
Q ss_pred -----CCC--eEEEEeCCCCCe--------eeeeec--CCCeEEEEECCCCCeEEEE
Q psy8285 359 -----CDQ--TVRLWNSMNGKE--------KCHVKT--DSQVTSILWSEQYRELVTS 398 (507)
Q Consensus 359 -----~d~--~i~i~d~~~~~~--------~~~~~~--~~~i~~~~~s~~~~~l~~~ 398 (507)
... .+..+....... +..+.. ......+.|.|||.+.++.
T Consensus 105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~ 161 (450)
T d1crua_ 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI 161 (450)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE
T ss_pred CcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEe
Confidence 001 233333322211 011111 1356789999999876664
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=83.82 E-value=13 Score=32.56 Aligned_cols=51 Identities=8% Similarity=0.099 Sum_probs=36.0
Q ss_pred CCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEEe--------ecCccEEEEEe
Q psy8285 208 NAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKLR--------THMHQVIAMCW 259 (507)
Q Consensus 208 ~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~ 259 (507)
-...++|+|.|+++.+++- -..|.|++++..+++...... ..+.....|++
T Consensus 26 L~~P~~la~~pdg~llVte-r~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~ 84 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTE-RATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAF 84 (450)
T ss_dssp CSSEEEEEECTTSCEEEEE-TTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEE
T ss_pred CCCceEEEEeCCCeEEEEE-ecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEe
Confidence 3567899999999888776 457999999987765433221 12356778888
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=82.36 E-value=11 Score=30.39 Aligned_cols=219 Identities=15% Similarity=0.109 Sum_probs=105.5
Q ss_pred eeeeeeCCCCEEEEEcCCeEEEEECCCCceeEEEecCCCCCCceEEEEEccCCCeEEEEeCCCCcEEEEeCCCceeEEEE
Q psy8285 168 TSGLDWGYHDTLAVALDTSVYTWNTKTNKTQLLVEYPTYDNAYISCVAWKPRTTDLAVTNTCTEYIDLWHEQEERLIQKL 247 (507)
Q Consensus 168 i~~~~~s~~~~~~~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~dg~i~iwd~~~~~~~~~~ 247 (507)
|..++-.....++.. ||.|+.|-.......-.... ....+..++-- ....++- .||.+..|...........
T Consensus 28 i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~~---~~~~v~~v~~G--~~~~~al--~dg~v~~wG~~~~gq~~~~ 99 (273)
T d1jtdb_ 28 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAA---TQSGVDAIAAG--NYHSLAL--KDGEVIAWGGNEDGQTTVP 99 (273)
T ss_dssp EEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGG---GGSCCCEEEEC--SSEEEEE--ETTEEEEEECCTTSTTCCC
T ss_pred cEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeeec---ccccceEEecC--CCceeee--eeeeeeccCCCcceeeccc
Confidence 444555444556655 89999997654322111111 23345555432 2222223 4788999975432211111
Q ss_pred eecCccEEEEEeeCCEEEEEecCCeEEEEECCCCCcCceeeecCCCceEEEEEcCCCCEEEEEeCCcEEEEEcCCCCCCC
Q psy8285 248 RTHMHQVIAMCWNGNLLSCGTIGGNILHYDVRTHSDYPTAITREGDVVCGLKWSPNGRYLASGSNNTVKIWDFRQLDAKR 327 (507)
Q Consensus 248 ~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~d~~~~~~~~ 327 (507)
......+..++......+.. .|+.+..|......... ........|..++- ....++...++.++.|-.... .
T Consensus 100 ~~~~~~~~~i~~~~~~~~~~-~dg~v~~~g~~~~~~~~-~~~~~~~~v~~~~~--~~~~~~~~~~g~~~~~G~~~~---g 172 (273)
T d1jtdb_ 100 AEARSGVDAIAAGAWASYAL-KDGKVIAWGDDSDGQTT-VPAEAQSGVTALDG--GVYTALAVKNGGVIAWGDNYF---G 172 (273)
T ss_dssp GGGGSSCCEEEEETTEEEEE-ETTEEEEEECCTTSTTS-CCGGGGSSEEEEEE--CSSEEEEEETTEEEEEECCTT---S
T ss_pred cccccceeEEeeeccccccc-ccccceecccCCCCcee-eeccCCceEEEEec--cceeeeeecccceeEeecccC---C
Confidence 11222344444444444333 48899999755433211 11122234444433 223344444688888876543 1
Q ss_pred CeeeecCCCCCeeEEEEccCCCcEEEEEccCCCCeEEEEeCCC-CCeeeeeecCCCeEEEEECCCCCeEEEEeccCCCeE
Q psy8285 328 PQVNNQCHLSAVKAIAWCPWEPTLLATGGGICDQTVRLWNSMN-GKEKCHVKTDSQVTSILWSEQYRELVTSHGKQDCSL 406 (507)
Q Consensus 328 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~g~~d~~i 406 (507)
...........|..++.... +.++. . |+.|+.|=... ++.-........|..++-... ..++. .||.|
T Consensus 173 ~~~~~~~~~~~v~~Is~G~~--h~~~l-~---dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~-~~~~l----~~g~v 241 (273)
T d1jtdb_ 173 QTTVPAEAQSGVDDVAGGIF--HSLAL-K---DGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW-YSLAL----KNGKV 241 (273)
T ss_dssp TTSCCGGGSSSEEEEEECSS--EEEEE-E---TTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS-CEEEE----ETTEE
T ss_pred cccccccccCCccceeccce--eeEEE-e---cCcEEEcCCCCCCccCCCccCCCCcEEEEeCcc-eEEEE----ECCEE
Confidence 22222224456777766432 33332 2 78999995432 222211122234556554322 22222 37899
Q ss_pred EEEeCC
Q psy8285 407 KMWEYP 412 (507)
Q Consensus 407 ~v~d~~ 412 (507)
..|-..
T Consensus 242 ~~WG~~ 247 (273)
T d1jtdb_ 242 IAWGSS 247 (273)
T ss_dssp EEESTT
T ss_pred EEECCC
Confidence 999543
|